Query 048398
Match_columns 280
No_of_seqs 328 out of 2525
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.8 6.1E-18 1.3E-22 145.5 11.0 116 156-275 20-139 (238)
2 PF01209 Ubie_methyltran: ubiE 99.7 2.1E-17 4.6E-22 142.9 10.5 88 185-274 47-135 (233)
3 COG2227 UbiG 2-polyprenyl-3-me 99.7 4.8E-17 1E-21 138.1 5.7 121 146-273 20-142 (243)
4 smart00138 MeTrc Methyltransfe 99.7 5.8E-16 1.3E-20 136.6 11.9 187 56-279 4-227 (264)
5 PLN02233 ubiquinone biosynthes 99.6 2.4E-15 5.1E-20 132.6 13.8 90 185-274 73-164 (261)
6 TIGR03587 Pse_Me-ase pseudamin 99.6 2.6E-15 5.7E-20 127.5 12.3 85 185-277 43-127 (204)
7 PF12847 Methyltransf_18: Meth 99.6 2.2E-15 4.8E-20 115.2 10.5 84 185-270 1-86 (112)
8 PF13847 Methyltransf_31: Meth 99.6 2.6E-15 5.7E-20 121.5 11.3 86 185-273 3-91 (152)
9 PF06325 PrmA: Ribosomal prote 99.6 1E-15 2.3E-20 136.1 9.2 148 93-266 86-236 (295)
10 PLN02396 hexaprenyldihydroxybe 99.6 4E-15 8.6E-20 134.3 12.5 87 185-274 131-217 (322)
11 PRK05785 hypothetical protein; 99.6 3.9E-15 8.5E-20 128.4 11.6 79 185-274 51-129 (226)
12 PF13649 Methyltransf_25: Meth 99.6 1.1E-15 2.3E-20 115.3 7.0 88 189-279 1-92 (101)
13 PF08241 Methyltransf_11: Meth 99.6 6.4E-15 1.4E-19 108.6 9.9 78 190-273 1-78 (95)
14 PRK15451 tRNA cmo(5)U34 methyl 99.6 1.4E-14 3E-19 126.7 13.2 91 185-278 56-148 (247)
15 PLN02244 tocopherol O-methyltr 99.6 2.1E-14 4.6E-19 131.1 13.8 88 185-274 118-205 (340)
16 TIGR02752 MenG_heptapren 2-hep 99.6 2.7E-14 5.8E-19 123.4 13.4 88 185-274 45-133 (231)
17 COG2264 PrmA Ribosomal protein 99.6 6.8E-15 1.5E-19 130.0 9.0 105 153-264 134-238 (300)
18 PRK14103 trans-aconitate 2-met 99.6 1.5E-14 3.3E-19 126.9 10.4 80 185-274 29-108 (255)
19 TIGR00740 methyltransferase, p 99.6 3.8E-14 8.3E-19 123.2 12.0 91 185-278 53-145 (239)
20 PRK06202 hypothetical protein; 99.6 2E-14 4.4E-19 124.4 10.1 88 185-277 60-151 (232)
21 KOG1540 Ubiquinone biosynthesi 99.5 5.7E-14 1.2E-18 119.7 11.7 118 157-275 70-197 (296)
22 PRK11207 tellurite resistance 99.5 4.1E-14 9E-19 119.6 10.6 88 185-277 30-117 (197)
23 PRK11036 putative S-adenosyl-L 99.5 5E-14 1.1E-18 123.7 11.4 86 185-273 44-130 (255)
24 COG4106 Tam Trans-aconitate me 99.5 1.2E-14 2.7E-19 120.9 7.0 82 185-274 30-111 (257)
25 KOG1270 Methyltransferases [Co 99.5 5.7E-14 1.2E-18 120.3 7.9 84 186-274 90-177 (282)
26 PTZ00098 phosphoethanolamine N 99.5 1.9E-13 4E-18 120.7 11.4 88 185-277 52-139 (263)
27 TIGR02021 BchM-ChlM magnesium 99.5 4.5E-13 9.9E-18 114.9 12.6 83 185-273 55-137 (219)
28 PRK10258 biotin biosynthesis p 99.5 2.6E-13 5.7E-18 118.7 11.1 81 185-274 42-122 (251)
29 TIGR02072 BioC biotin biosynth 99.5 5.8E-13 1.2E-17 114.9 12.9 84 185-274 34-117 (240)
30 TIGR00477 tehB tellurite resis 99.5 2.8E-13 6.2E-18 114.3 10.1 86 185-276 30-115 (195)
31 PRK01683 trans-aconitate 2-met 99.5 3.5E-13 7.7E-18 118.4 11.1 81 185-273 31-111 (258)
32 PRK00517 prmA ribosomal protei 99.5 1.9E-13 4.1E-18 119.7 8.7 145 93-267 45-191 (250)
33 TIGR00406 prmA ribosomal prote 99.5 6E-13 1.3E-17 118.9 11.7 108 153-268 131-238 (288)
34 PRK07580 Mg-protoporphyrin IX 99.5 6.8E-13 1.5E-17 114.3 11.5 87 185-277 63-149 (230)
35 smart00828 PKS_MT Methyltransf 99.4 5.1E-13 1.1E-17 114.8 10.4 85 187-273 1-85 (224)
36 PF08242 Methyltransf_12: Meth 99.4 2.4E-14 5.1E-19 107.4 1.3 82 190-273 1-84 (99)
37 TIGR02716 C20_methyl_CrtF C-20 99.4 1.2E-12 2.5E-17 118.1 11.9 91 185-279 149-239 (306)
38 PRK12335 tellurite resistance 99.4 6.6E-13 1.4E-17 118.6 9.9 88 185-278 120-207 (287)
39 PLN02490 MPBQ/MSBQ methyltrans 99.4 1.1E-12 2.4E-17 119.0 11.5 84 185-273 113-196 (340)
40 PRK13944 protein-L-isoaspartat 99.4 4.8E-12 1E-16 107.6 14.7 85 185-270 72-157 (205)
41 TIGR00138 gidB 16S rRNA methyl 99.4 1.2E-12 2.5E-17 109.2 10.7 82 185-270 42-123 (181)
42 PLN02585 magnesium protoporphy 99.4 1E-12 2.3E-17 118.3 11.0 84 185-273 144-230 (315)
43 PRK00107 gidB 16S rRNA methylt 99.4 1.7E-12 3.7E-17 108.7 11.3 76 185-263 45-120 (187)
44 PRK11873 arsM arsenite S-adeno 99.4 1.5E-12 3.3E-17 115.3 11.2 87 185-273 77-164 (272)
45 PLN02336 phosphoethanolamine N 99.4 1.1E-12 2.4E-17 125.1 10.9 86 185-274 266-351 (475)
46 PF03848 TehB: Tellurite resis 99.4 1.9E-12 4.2E-17 108.1 10.9 88 185-278 30-117 (192)
47 PRK08317 hypothetical protein; 99.4 3.1E-12 6.6E-17 110.2 12.6 87 185-274 19-106 (241)
48 PRK15068 tRNA mo(5)U34 methylt 99.4 1.3E-12 2.8E-17 118.4 10.7 87 185-274 122-208 (322)
49 PF05401 NodS: Nodulation prot 99.4 3.3E-12 7E-17 106.0 11.8 82 185-273 43-124 (201)
50 PLN03075 nicotianamine synthas 99.4 3.2E-12 7E-17 113.3 12.3 93 185-278 123-217 (296)
51 PF00891 Methyltransf_2: O-met 99.4 2.2E-12 4.7E-17 112.3 10.9 107 160-280 76-183 (241)
52 PF02353 CMAS: Mycolic acid cy 99.4 1.9E-12 4E-17 114.6 10.0 85 185-274 62-146 (273)
53 PF05175 MTS: Methyltransferas 99.4 5.6E-12 1.2E-16 104.1 11.8 82 185-269 31-112 (170)
54 COG2230 Cfa Cyclopropane fatty 99.4 4.7E-12 1E-16 111.2 11.4 84 185-273 72-155 (283)
55 PRK06922 hypothetical protein; 99.4 2.5E-12 5.5E-17 123.9 10.1 82 185-269 418-501 (677)
56 PRK11088 rrmA 23S rRNA methylt 99.4 7.9E-12 1.7E-16 110.8 12.2 73 185-264 85-160 (272)
57 PRK00216 ubiE ubiquinone/menaq 99.4 9.5E-12 2.1E-16 107.4 12.2 89 185-274 51-140 (239)
58 KOG4300 Predicted methyltransf 99.3 7.7E-12 1.7E-16 103.6 10.1 87 185-274 76-164 (252)
59 TIGR02081 metW methionine bios 99.3 6E-12 1.3E-16 106.0 9.8 80 185-274 13-94 (194)
60 PRK00121 trmB tRNA (guanine-N( 99.3 2.3E-12 5.1E-17 109.3 7.3 80 185-266 40-122 (202)
61 TIGR00080 pimt protein-L-isoas 99.3 2E-11 4.3E-16 104.6 13.0 84 185-270 77-161 (215)
62 PF07021 MetW: Methionine bios 99.3 4.4E-12 9.6E-17 104.9 8.2 81 185-275 13-95 (193)
63 PF13489 Methyltransf_23: Meth 99.3 4.4E-12 9.6E-17 102.7 7.5 75 185-273 22-96 (161)
64 TIGR00452 methyltransferase, p 99.3 1.9E-11 4.1E-16 110.1 12.2 86 185-273 121-206 (314)
65 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 2.8E-11 6E-16 103.4 12.2 85 185-273 39-124 (223)
66 COG1352 CheR Methylase of chem 99.3 1.7E-11 3.6E-16 107.6 10.5 168 72-279 22-226 (268)
67 PRK05134 bifunctional 3-demeth 99.3 4.3E-11 9.4E-16 103.5 12.9 119 148-274 14-133 (233)
68 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.7E-11 3.6E-16 104.8 9.9 91 185-277 34-135 (213)
69 PRK13942 protein-L-isoaspartat 99.3 3.3E-11 7.2E-16 103.0 11.6 84 185-270 76-160 (212)
70 TIGR03533 L3_gln_methyl protei 99.3 1.5E-11 3.2E-16 109.7 9.7 76 185-262 121-196 (284)
71 PRK15001 SAM-dependent 23S rib 99.3 2.3E-11 4.9E-16 112.0 10.9 81 186-267 229-310 (378)
72 PLN02336 phosphoethanolamine N 99.3 1.3E-11 2.9E-16 117.7 9.2 85 185-275 37-123 (475)
73 TIGR02469 CbiT precorrin-6Y C5 99.3 5.7E-11 1.2E-15 92.0 11.0 81 185-267 19-100 (124)
74 PF13659 Methyltransf_26: Meth 99.3 1.3E-11 2.8E-16 95.0 6.5 79 187-267 2-82 (117)
75 TIGR01983 UbiG ubiquinone bios 99.3 1.5E-10 3.2E-15 99.4 13.8 122 148-274 7-131 (224)
76 PRK11805 N5-glutamine S-adenos 99.2 2.3E-11 4.9E-16 109.6 9.0 74 187-262 135-208 (307)
77 PRK10611 chemotaxis methyltran 99.2 7.5E-11 1.6E-15 104.7 12.1 180 56-279 27-247 (287)
78 PRK00312 pcm protein-L-isoaspa 99.2 1.4E-10 3E-15 99.0 13.4 82 185-270 78-159 (212)
79 PRK08287 cobalt-precorrin-6Y C 99.2 2.7E-11 5.9E-16 101.4 8.4 80 185-268 31-110 (187)
80 TIGR00536 hemK_fam HemK family 99.2 6.8E-11 1.5E-15 105.5 11.3 74 187-262 116-189 (284)
81 PRK14966 unknown domain/N5-glu 99.2 5.3E-11 1.1E-15 110.0 10.8 76 185-263 251-327 (423)
82 TIGR00091 tRNA (guanine-N(7)-) 99.2 2.1E-11 4.6E-16 102.7 7.6 81 185-267 16-99 (194)
83 COG4123 Predicted O-methyltran 99.2 2.4E-11 5.1E-16 105.0 7.6 81 185-266 44-126 (248)
84 PRK11705 cyclopropane fatty ac 99.2 6.2E-11 1.3E-15 109.9 10.8 79 185-272 167-245 (383)
85 COG2890 HemK Methylase of poly 99.2 3.9E-11 8.4E-16 106.7 9.0 71 188-262 113-183 (280)
86 TIGR03534 RF_mod_PrmC protein- 99.2 1.3E-10 2.8E-15 101.3 11.3 77 185-264 87-163 (251)
87 TIGR00537 hemK_rel_arch HemK-r 99.2 1.2E-10 2.6E-15 96.8 10.3 80 185-271 19-98 (179)
88 PRK13255 thiopurine S-methyltr 99.2 1.3E-10 2.8E-15 99.7 10.5 92 185-278 37-139 (218)
89 COG2263 Predicted RNA methylas 99.2 1.3E-10 2.9E-15 95.4 9.6 71 185-262 45-115 (198)
90 TIGR03438 probable methyltrans 99.2 3.4E-10 7.4E-15 101.8 12.9 94 185-279 63-162 (301)
91 PRK03522 rumB 23S rRNA methylu 99.2 1.1E-10 2.5E-15 105.6 9.5 100 157-262 147-247 (315)
92 KOG1541 Predicted protein carb 99.1 1.1E-10 2.4E-15 97.7 7.7 75 185-268 50-125 (270)
93 PRK09489 rsmC 16S ribosomal RN 99.1 2.7E-10 5.8E-15 104.0 10.6 79 185-268 196-274 (342)
94 PRK01544 bifunctional N5-gluta 99.1 1.5E-10 3.2E-15 111.1 9.0 75 186-262 139-213 (506)
95 smart00650 rADc Ribosomal RNA 99.1 3.2E-10 6.9E-15 93.4 9.3 76 185-266 13-88 (169)
96 TIGR03704 PrmC_rel_meth putati 99.1 5.7E-10 1.2E-14 97.8 11.1 73 186-263 87-161 (251)
97 PHA03411 putative methyltransf 99.1 3E-10 6.6E-15 99.5 9.2 82 185-274 64-145 (279)
98 PRK13168 rumA 23S rRNA m(5)U19 99.1 3.4E-10 7.3E-15 107.1 10.2 99 158-262 272-374 (443)
99 PF01135 PCMT: Protein-L-isoas 99.1 5E-10 1.1E-14 95.3 9.8 84 185-270 72-156 (209)
100 PRK14121 tRNA (guanine-N(7)-)- 99.1 3.4E-10 7.3E-15 104.1 9.3 81 185-267 122-204 (390)
101 PRK09328 N5-glutamine S-adenos 99.1 8.9E-10 1.9E-14 97.5 11.4 75 185-262 108-182 (275)
102 PRK13943 protein-L-isoaspartat 99.1 5.2E-10 1.1E-14 101.2 9.2 84 185-270 80-164 (322)
103 PRK04457 spermidine synthase; 99.0 6.9E-10 1.5E-14 97.9 8.8 78 185-263 66-144 (262)
104 COG2518 Pcm Protein-L-isoaspar 99.0 1.3E-09 2.8E-14 91.6 9.6 82 185-270 72-153 (209)
105 COG2813 RsmC 16S RNA G1207 met 99.0 1.4E-09 3.1E-14 95.9 10.1 78 186-267 159-236 (300)
106 PF08003 Methyltransf_9: Prote 99.0 1.2E-09 2.5E-14 96.5 9.3 95 174-273 106-200 (315)
107 cd02440 AdoMet_MTases S-adenos 99.0 1.4E-09 3E-14 80.0 8.4 78 188-268 1-79 (107)
108 PRK11727 23S rRNA mA1618 methy 99.0 3.3E-09 7.2E-14 95.6 12.1 84 185-268 114-202 (321)
109 PRK14967 putative methyltransf 99.0 1.6E-09 3.4E-14 93.3 9.7 74 185-263 36-109 (223)
110 PLN02781 Probable caffeoyl-CoA 99.0 1.5E-09 3.3E-14 94.2 9.6 78 185-263 68-152 (234)
111 PF01739 CheR: CheR methyltran 99.0 5.8E-10 1.2E-14 93.9 6.7 95 185-279 31-160 (196)
112 PRK00377 cbiT cobalt-precorrin 99.0 2.6E-09 5.6E-14 90.3 10.4 78 185-263 40-119 (198)
113 KOG1271 Methyltransferases [Ge 99.0 2.9E-09 6.2E-14 86.9 9.9 80 185-265 67-146 (227)
114 PRK10909 rsmD 16S rRNA m(2)G96 99.0 2.2E-09 4.7E-14 90.7 9.5 77 185-264 53-130 (199)
115 TIGR02085 meth_trns_rumB 23S r 99.0 1.5E-09 3.3E-14 100.4 9.3 101 156-262 206-307 (374)
116 PRK13256 thiopurine S-methyltr 99.0 2.8E-09 6E-14 91.5 9.7 90 185-276 43-145 (226)
117 PRK07402 precorrin-6B methylas 99.0 4.2E-09 9.2E-14 88.8 10.6 75 185-261 40-115 (196)
118 PRK14968 putative methyltransf 99.0 3.3E-09 7.1E-14 88.3 9.9 78 185-266 23-101 (188)
119 KOG2904 Predicted methyltransf 99.0 4.6E-09 1E-13 90.8 10.7 78 185-263 148-230 (328)
120 TIGR01177 conserved hypothetic 99.0 3.2E-09 7E-14 96.7 9.8 74 185-262 182-255 (329)
121 PRK14896 ksgA 16S ribosomal RN 99.0 4.7E-09 1E-13 92.4 10.4 73 185-265 29-101 (258)
122 PF01596 Methyltransf_3: O-met 98.9 2.9E-09 6.3E-14 90.4 8.2 78 185-263 45-129 (205)
123 PLN02672 methionine S-methyltr 98.9 2.7E-09 5.8E-14 109.0 9.1 77 185-262 118-210 (1082)
124 COG2242 CobL Precorrin-6B meth 98.9 9E-09 2E-13 84.8 10.4 77 185-264 34-111 (187)
125 PHA03412 putative methyltransf 98.9 2.7E-09 5.9E-14 91.6 7.5 74 185-266 49-125 (241)
126 TIGR00479 rumA 23S rRNA (uraci 98.9 4.4E-09 9.4E-14 99.3 9.4 100 157-262 266-369 (431)
127 PRK00274 ksgA 16S ribosomal RN 98.9 5E-09 1.1E-13 92.9 9.0 73 185-264 42-114 (272)
128 KOG1499 Protein arginine N-met 98.9 4.9E-09 1.1E-13 93.8 8.8 77 185-264 60-136 (346)
129 COG4976 Predicted methyltransf 98.9 1.6E-10 3.5E-15 97.4 -0.6 82 185-275 125-208 (287)
130 PTZ00338 dimethyladenosine tra 98.9 7.9E-09 1.7E-13 92.5 9.7 75 185-264 36-110 (294)
131 KOG3420 Predicted RNA methylas 98.9 4.5E-09 9.7E-14 82.6 7.0 92 168-265 33-124 (185)
132 PRK11188 rrmJ 23S rRNA methylt 98.9 6.5E-09 1.4E-13 88.7 8.5 73 185-270 51-132 (209)
133 KOG3010 Methyltransferase [Gen 98.9 4E-09 8.6E-14 89.7 6.1 86 185-273 33-118 (261)
134 PRK04266 fibrillarin; Provisio 98.9 1.4E-08 3E-13 87.6 9.2 73 185-262 72-148 (226)
135 KOG3178 Hydroxyindole-O-methyl 98.8 1.3E-08 2.9E-13 91.2 9.3 109 160-280 153-261 (342)
136 PRK00811 spermidine synthase; 98.8 1.1E-08 2.4E-13 91.3 8.5 80 185-264 76-159 (283)
137 COG4122 Predicted O-methyltran 98.8 1.5E-08 3.2E-13 86.4 8.6 78 185-263 59-140 (219)
138 PLN02476 O-methyltransferase 98.8 1.6E-08 3.5E-13 89.3 9.2 78 185-263 118-202 (278)
139 PRK05031 tRNA (uracil-5-)-meth 98.8 1.4E-08 3.1E-13 93.6 8.7 86 156-248 180-265 (362)
140 PRK10901 16S rRNA methyltransf 98.8 2.3E-08 5E-13 94.2 9.9 75 185-262 244-320 (427)
141 PF02390 Methyltransf_4: Putat 98.8 3.3E-08 7.2E-13 83.4 8.9 81 186-268 18-101 (195)
142 PRK15128 23S rRNA m(5)C1962 me 98.8 2.7E-08 5.8E-13 92.6 9.0 76 185-262 220-300 (396)
143 TIGR02143 trmA_only tRNA (urac 98.8 2.6E-08 5.6E-13 91.5 8.6 87 156-249 171-257 (353)
144 TIGR00755 ksgA dimethyladenosi 98.8 4.8E-08 1E-12 85.7 9.6 72 185-264 29-103 (253)
145 PRK14902 16S rRNA methyltransf 98.7 4.3E-08 9.4E-13 92.8 9.5 75 185-262 250-327 (444)
146 PRK11783 rlmL 23S rRNA m(2)G24 98.7 3E-08 6.5E-13 98.8 8.5 76 185-262 538-615 (702)
147 PLN02589 caffeoyl-CoA O-methyl 98.7 4.1E-08 8.9E-13 85.6 8.2 77 185-262 79-163 (247)
148 KOG1500 Protein arginine N-met 98.7 4.8E-08 1E-12 86.7 8.6 87 170-262 164-250 (517)
149 PRK14904 16S rRNA methyltransf 98.7 7.3E-08 1.6E-12 91.3 10.5 74 185-261 250-324 (445)
150 TIGR00438 rrmJ cell division p 98.7 4.1E-08 8.9E-13 82.2 7.9 67 185-264 32-107 (188)
151 TIGR00446 nop2p NOL1/NOP2/sun 98.7 6.7E-08 1.5E-12 85.4 9.3 76 185-262 71-147 (264)
152 TIGR00095 RNA methyltransferas 98.7 1.1E-07 2.3E-12 79.9 10.0 90 166-262 35-128 (189)
153 KOG2361 Predicted methyltransf 98.7 2.5E-08 5.5E-13 84.9 5.8 91 186-279 72-168 (264)
154 PF09445 Methyltransf_15: RNA 98.7 1.5E-08 3.3E-13 82.4 4.3 72 188-262 2-76 (163)
155 PRK01581 speE spermidine synth 98.7 5.5E-08 1.2E-12 88.6 8.3 79 185-263 150-234 (374)
156 PF10294 Methyltransf_16: Puta 98.7 4.1E-08 8.9E-13 81.3 6.9 82 185-267 45-131 (173)
157 PLN02366 spermidine synthase 98.7 7.5E-08 1.6E-12 86.7 9.1 81 185-265 91-175 (308)
158 PRK14903 16S rRNA methyltransf 98.7 8.7E-08 1.9E-12 90.3 9.9 76 185-262 237-314 (431)
159 COG2265 TrmA SAM-dependent met 98.7 6.6E-08 1.4E-12 90.7 8.9 100 156-261 266-368 (432)
160 TIGR00563 rsmB ribosomal RNA s 98.7 8.9E-08 1.9E-12 90.3 9.1 85 185-270 238-330 (426)
161 PF05958 tRNA_U5-meth_tr: tRNA 98.7 1.1E-07 2.4E-12 87.3 9.4 87 156-249 170-256 (352)
162 PRK14901 16S rRNA methyltransf 98.7 9.9E-08 2.2E-12 90.1 9.3 84 185-270 252-346 (434)
163 PF01170 UPF0020: Putative RNA 98.7 9.1E-08 2E-12 79.6 8.0 80 185-265 28-116 (179)
164 PF02475 Met_10: Met-10+ like- 98.6 1.4E-07 3.1E-12 79.6 8.7 78 185-264 101-178 (200)
165 PRK00050 16S rRNA m(4)C1402 me 98.6 8.6E-08 1.9E-12 85.5 7.6 85 185-273 19-110 (296)
166 PF09243 Rsm22: Mitochondrial 98.6 1.2E-07 2.7E-12 84.1 8.6 91 185-278 33-125 (274)
167 PRK04148 hypothetical protein; 98.6 2.2E-07 4.9E-12 73.1 9.0 74 185-269 16-91 (134)
168 PF05724 TPMT: Thiopurine S-me 98.6 1.3E-07 2.7E-12 81.2 8.1 88 185-274 37-135 (218)
169 PF03291 Pox_MCEL: mRNA cappin 98.6 1.5E-07 3.2E-12 85.5 8.7 85 185-270 62-160 (331)
170 PTZ00146 fibrillarin; Provisio 98.6 2.9E-07 6.2E-12 81.7 10.1 76 185-264 132-211 (293)
171 KOG3191 Predicted N6-DNA-methy 98.6 2.7E-07 6E-12 75.4 9.1 75 185-263 43-118 (209)
172 PF05891 Methyltransf_PK: AdoM 98.6 7.9E-08 1.7E-12 81.3 6.0 93 185-280 55-147 (218)
173 TIGR00417 speE spermidine synt 98.6 2.3E-07 5.1E-12 82.2 8.8 80 185-264 72-154 (270)
174 PF05185 PRMT5: PRMT5 arginine 98.6 5.9E-07 1.3E-11 84.8 11.5 75 186-262 187-265 (448)
175 PLN02232 ubiquinone biosynthes 98.5 1.9E-07 4E-12 76.3 6.8 61 213-273 1-62 (160)
176 PRK03612 spermidine synthase; 98.5 2E-07 4.3E-12 90.0 7.6 81 185-265 297-383 (521)
177 PRK04338 N(2),N(2)-dimethylgua 98.5 2.6E-07 5.7E-12 85.6 8.0 74 186-262 58-132 (382)
178 PF06080 DUF938: Protein of un 98.5 8.6E-07 1.9E-11 74.5 9.9 104 167-276 10-123 (204)
179 KOG0820 Ribosomal RNA adenine 98.5 4.8E-07 1E-11 78.4 8.3 75 185-264 58-132 (315)
180 KOG1975 mRNA cap methyltransfe 98.5 4.6E-07 1E-11 80.2 7.5 88 185-273 117-215 (389)
181 COG0030 KsgA Dimethyladenosine 98.4 1.3E-06 2.9E-11 76.2 9.3 73 185-263 30-103 (259)
182 PLN02823 spermine synthase 98.4 1.2E-06 2.6E-11 79.8 8.8 78 185-262 103-183 (336)
183 PF08704 GCD14: tRNA methyltra 98.4 1.9E-06 4E-11 75.1 9.4 77 185-262 40-120 (247)
184 KOG2940 Predicted methyltransf 98.4 5.9E-07 1.3E-11 76.1 6.0 82 185-271 72-153 (325)
185 COG0220 Predicted S-adenosylme 98.4 8.2E-07 1.8E-11 76.4 7.0 79 187-267 50-131 (227)
186 TIGR00478 tly hemolysin TlyA f 98.4 8.9E-07 1.9E-11 76.3 7.0 73 185-265 75-153 (228)
187 COG2519 GCD14 tRNA(1-methylade 98.4 1.5E-06 3.3E-11 74.9 8.4 76 185-262 94-170 (256)
188 TIGR01444 fkbM_fam methyltrans 98.3 2.7E-06 5.8E-11 67.6 7.9 59 188-248 1-59 (143)
189 PF12147 Methyltransf_20: Puta 98.3 1.6E-05 3.5E-10 69.9 12.9 89 185-274 135-228 (311)
190 PF03602 Cons_hypoth95: Conser 98.3 2.1E-06 4.5E-11 71.7 6.9 92 164-262 25-121 (183)
191 COG4076 Predicted RNA methylas 98.2 3.3E-06 7.2E-11 69.4 7.1 86 186-277 33-118 (252)
192 COG1092 Predicted SAM-dependen 98.2 3E-06 6.4E-11 78.4 7.5 75 185-261 217-296 (393)
193 COG0116 Predicted N6-adenine-s 98.2 6.9E-06 1.5E-10 75.1 9.4 77 185-262 191-306 (381)
194 PF02527 GidB: rRNA small subu 98.2 1.9E-05 4.1E-10 65.9 11.1 75 188-265 51-125 (184)
195 KOG1661 Protein-L-isoaspartate 98.2 7E-06 1.5E-10 68.7 8.4 98 169-270 70-177 (237)
196 PRK11783 rlmL 23S rRNA m(2)G24 98.2 9.3E-06 2E-10 81.2 10.7 77 185-262 190-310 (702)
197 KOG2899 Predicted methyltransf 98.2 3.7E-06 8.1E-11 71.8 6.5 46 185-230 58-103 (288)
198 PRK01544 bifunctional N5-gluta 98.2 3.5E-06 7.6E-11 81.0 6.9 81 185-267 347-429 (506)
199 PF03141 Methyltransf_29: Puta 98.2 1.1E-06 2.4E-11 82.4 3.0 94 170-272 100-198 (506)
200 PF13679 Methyltransf_32: Meth 98.2 9.8E-06 2.1E-10 64.7 8.0 85 185-270 25-114 (141)
201 KOG2187 tRNA uracil-5-methyltr 98.1 3.2E-06 6.9E-11 79.3 5.7 88 156-249 356-443 (534)
202 COG3897 Predicted methyltransf 98.1 5.5E-06 1.2E-10 68.6 5.9 78 185-269 79-156 (218)
203 TIGR00006 S-adenosyl-methyltra 98.1 1.4E-05 3E-10 71.7 8.9 86 185-273 20-112 (305)
204 COG3963 Phospholipid N-methylt 98.1 9.9E-06 2.2E-10 65.5 6.9 87 185-278 48-140 (194)
205 PF00398 RrnaAD: Ribosomal RNA 98.1 3.2E-05 6.9E-10 68.3 10.6 74 185-264 30-106 (262)
206 PF10672 Methyltrans_SAM: S-ad 98.1 1.3E-05 2.8E-10 71.3 7.9 76 185-262 123-202 (286)
207 KOG2730 Methylase [General fun 98.1 2.7E-06 5.8E-11 71.6 3.3 62 185-249 94-155 (263)
208 COG0421 SpeE Spermidine syntha 98.1 1.4E-05 3.1E-10 70.9 8.1 80 185-264 76-158 (282)
209 KOG1663 O-methyltransferase [S 98.1 3.9E-05 8.4E-10 65.3 10.1 77 185-262 73-156 (237)
210 PF04816 DUF633: Family of unk 98.1 1.3E-05 2.8E-10 68.0 7.4 73 189-263 1-74 (205)
211 PF05971 Methyltransf_10: Prot 98.0 5.4E-05 1.2E-09 67.5 11.0 104 167-271 81-193 (299)
212 PF05148 Methyltransf_8: Hypot 98.0 1.7E-05 3.6E-10 66.8 6.8 76 173-269 61-136 (219)
213 COG2520 Predicted methyltransf 98.0 1.5E-05 3.2E-10 72.4 7.0 79 185-265 188-266 (341)
214 COG0742 N6-adenine-specific me 98.0 3.7E-05 8E-10 63.9 8.6 95 164-264 26-123 (187)
215 COG1041 Predicted DNA modifica 98.0 2.8E-05 6.1E-10 70.2 8.3 74 185-262 197-271 (347)
216 PF01564 Spermine_synth: Sperm 97.9 2.7E-05 5.8E-10 68.1 7.1 80 185-264 76-159 (246)
217 COG0357 GidB Predicted S-adeno 97.9 6.8E-05 1.5E-09 63.9 9.2 76 186-264 68-144 (215)
218 PF02384 N6_Mtase: N-6 DNA Met 97.9 3E-05 6.6E-10 69.9 7.5 81 185-265 46-135 (311)
219 PF04672 Methyltransf_19: S-ad 97.9 7.4E-05 1.6E-09 65.4 9.0 87 185-273 68-168 (267)
220 TIGR00308 TRM1 tRNA(guanine-26 97.9 1.9E-05 4.1E-10 73.0 5.4 75 187-263 46-122 (374)
221 KOG1269 SAM-dependent methyltr 97.8 4.7E-05 1E-09 70.0 6.7 90 185-276 110-199 (364)
222 PF05219 DREV: DREV methyltran 97.8 7.1E-05 1.5E-09 65.0 7.2 77 185-274 94-170 (265)
223 PRK11760 putative 23S rRNA C24 97.8 7.2E-05 1.6E-09 67.6 7.5 69 185-264 211-279 (357)
224 PF08123 DOT1: Histone methyla 97.8 4.3E-05 9.3E-10 64.9 5.7 81 185-265 42-132 (205)
225 PF07091 FmrO: Ribosomal RNA m 97.8 0.00012 2.6E-09 63.4 8.2 85 185-273 105-189 (251)
226 TIGR02987 met_A_Alw26 type II 97.7 6.2E-05 1.3E-09 72.9 6.8 76 185-262 31-119 (524)
227 COG2384 Predicted SAM-dependen 97.7 0.00026 5.7E-09 59.9 8.9 78 185-263 16-93 (226)
228 TIGR03439 methyl_EasF probable 97.7 0.00039 8.4E-09 63.0 10.2 93 185-279 76-181 (319)
229 KOG3045 Predicted RNA methylas 97.6 0.00019 4.1E-09 62.1 7.1 72 173-267 169-240 (325)
230 KOG2915 tRNA(1-methyladenosine 97.6 0.00064 1.4E-08 59.3 10.2 79 185-264 105-186 (314)
231 COG0500 SmtA SAM-dependent met 97.6 0.00068 1.5E-08 52.4 9.4 78 189-269 52-133 (257)
232 KOG1331 Predicted methyltransf 97.5 4.6E-05 9.9E-10 66.8 2.4 77 185-273 45-121 (293)
233 PRK00536 speE spermidine synth 97.5 0.00044 9.6E-09 60.8 8.4 74 185-263 72-147 (262)
234 PF01795 Methyltransf_5: MraW 97.5 0.0002 4.3E-09 64.3 5.7 86 185-273 20-113 (310)
235 PF11968 DUF3321: Putative met 97.4 0.00019 4.1E-09 60.8 3.8 69 186-274 52-123 (219)
236 COG3129 Predicted SAM-dependen 97.3 0.0012 2.7E-08 56.3 7.9 85 185-270 78-168 (292)
237 COG0293 FtsJ 23S rRNA methylas 97.2 0.0013 2.9E-08 55.5 7.7 65 185-262 45-118 (205)
238 PRK11933 yebU rRNA (cytosine-C 97.2 0.0015 3.2E-08 62.3 8.8 75 185-261 113-189 (470)
239 KOG1501 Arginine N-methyltrans 97.2 0.00078 1.7E-08 62.4 6.5 63 185-249 66-128 (636)
240 PF03059 NAS: Nicotianamine sy 97.1 0.0018 3.9E-08 57.3 7.5 82 185-266 120-203 (276)
241 PRK10742 putative methyltransf 97.1 0.0021 4.5E-08 55.9 7.2 78 188-267 91-176 (250)
242 COG2521 Predicted archaeal met 97.1 0.00034 7.4E-09 59.7 2.3 74 185-260 134-210 (287)
243 KOG3115 Methyltransferase-like 96.9 0.0013 2.7E-08 55.1 4.5 65 185-249 60-129 (249)
244 COG0275 Predicted S-adenosylme 96.8 0.0075 1.6E-07 53.6 8.7 78 185-265 23-106 (314)
245 COG4262 Predicted spermidine s 96.7 0.0032 6.9E-08 57.2 5.3 78 185-263 289-373 (508)
246 KOG4058 Uncharacterized conser 96.6 0.0073 1.6E-07 48.2 6.5 76 185-262 72-147 (199)
247 PF01728 FtsJ: FtsJ-like methy 96.5 0.0021 4.6E-08 53.2 2.9 68 185-265 23-101 (181)
248 KOG2352 Predicted spermine/spe 96.5 0.023 5.1E-07 53.6 9.9 82 187-272 50-131 (482)
249 PHA01634 hypothetical protein 96.4 0.04 8.6E-07 42.9 9.3 47 185-232 28-74 (156)
250 PF13578 Methyltransf_24: Meth 96.4 0.00066 1.4E-08 51.0 -0.7 72 190-263 1-77 (106)
251 PF02636 Methyltransf_28: Puta 96.3 0.014 3.1E-07 51.0 7.4 80 186-270 19-110 (252)
252 KOG4589 Cell division protein 96.2 0.0095 2E-07 49.4 5.1 66 185-263 69-144 (232)
253 PF04445 SAM_MT: Putative SAM- 96.1 0.023 4.9E-07 49.1 7.2 79 187-267 77-163 (234)
254 PF07757 AdoMet_MTase: Predict 96.1 0.0042 9E-08 46.8 2.3 31 185-217 58-88 (112)
255 COG1189 Predicted rRNA methyla 96.0 0.019 4.2E-07 49.4 6.3 73 185-266 79-155 (245)
256 PF07942 N2227: N2227-like pro 96.0 0.12 2.6E-06 45.7 11.5 77 185-263 56-173 (270)
257 KOG2793 Putative N2,N2-dimethy 95.9 0.041 8.8E-07 48.0 7.8 87 185-273 86-180 (248)
258 COG0144 Sun tRNA and rRNA cyto 95.8 0.095 2.1E-06 48.3 10.6 76 185-262 156-236 (355)
259 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.8 0.037 8E-07 49.4 7.6 75 185-261 85-162 (283)
260 PF01555 N6_N4_Mtase: DNA meth 95.7 0.034 7.4E-07 47.0 6.8 52 174-227 180-231 (231)
261 PF02005 TRM: N2,N2-dimethylgu 95.7 0.041 9E-07 51.1 7.6 76 185-261 49-127 (377)
262 PF11599 AviRa: RRNA methyltra 95.6 0.026 5.6E-07 47.9 5.5 45 185-229 51-97 (246)
263 PRK11524 putative methyltransf 95.6 0.044 9.5E-07 48.9 7.5 56 174-231 197-252 (284)
264 KOG3987 Uncharacterized conser 95.6 0.003 6.6E-08 53.1 -0.1 77 185-274 112-188 (288)
265 PLN02668 indole-3-acetate carb 95.6 0.074 1.6E-06 49.4 8.8 86 185-270 63-177 (386)
266 cd00315 Cyt_C5_DNA_methylase C 95.5 0.032 6.9E-07 49.6 6.1 72 188-269 2-76 (275)
267 PRK13699 putative methylase; P 95.3 0.072 1.6E-06 46.0 7.5 46 185-232 163-208 (227)
268 COG0286 HsdM Type I restrictio 95.1 0.063 1.4E-06 51.7 7.2 80 185-265 186-274 (489)
269 PF04072 LCM: Leucine carboxyl 95.1 0.21 4.6E-06 41.4 9.3 94 185-279 78-181 (183)
270 PF01861 DUF43: Protein of unk 94.9 0.36 7.8E-06 41.8 10.3 73 185-262 44-119 (243)
271 KOG1227 Putative methyltransfe 94.8 0.021 4.7E-07 50.6 2.8 75 185-262 194-269 (351)
272 COG5459 Predicted rRNA methyla 94.8 0.077 1.7E-06 48.3 6.2 79 185-265 113-195 (484)
273 COG1867 TRM1 N2,N2-dimethylgua 94.8 0.067 1.5E-06 48.9 5.9 72 186-259 53-125 (380)
274 COG1565 Uncharacterized conser 94.8 0.18 3.8E-06 46.2 8.5 79 185-269 77-163 (370)
275 KOG1709 Guanidinoacetate methy 94.7 0.15 3.3E-06 43.4 7.4 75 185-263 101-177 (271)
276 PF03492 Methyltransf_7: SAM d 94.5 0.074 1.6E-06 48.6 5.5 86 185-270 16-122 (334)
277 PF04989 CmcI: Cephalosporin h 94.4 0.063 1.4E-06 45.5 4.6 62 185-249 32-97 (206)
278 PF06962 rRNA_methylase: Putat 94.3 0.091 2E-06 41.7 5.0 59 211-272 1-61 (140)
279 PF01269 Fibrillarin: Fibrilla 93.3 1.1 2.3E-05 38.5 9.9 75 185-263 73-151 (229)
280 KOG2651 rRNA adenine N-6-methy 93.2 0.27 5.8E-06 45.3 6.5 42 185-227 153-194 (476)
281 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.1 0.68 1.5E-05 40.7 8.7 84 185-269 56-172 (256)
282 KOG2912 Predicted DNA methylas 92.8 0.3 6.4E-06 43.9 6.1 97 169-266 83-189 (419)
283 KOG2078 tRNA modification enzy 92.8 0.07 1.5E-06 49.6 2.3 59 185-246 249-308 (495)
284 COG1889 NOP1 Fibrillarin-like 92.5 0.92 2E-05 38.3 8.3 73 185-261 76-151 (231)
285 KOG2671 Putative RNA methylase 92.5 0.18 3.9E-06 45.8 4.4 76 185-262 208-291 (421)
286 PF05050 Methyltransf_21: Meth 92.5 0.47 1E-05 37.8 6.6 55 191-246 1-61 (167)
287 KOG2539 Mitochondrial/chloropl 90.8 0.25 5.4E-06 46.6 3.6 86 185-272 200-291 (491)
288 KOG3201 Uncharacterized conser 90.8 0.1 2.2E-06 42.4 0.9 82 185-266 29-114 (201)
289 PF05206 TRM13: Methyltransfer 89.9 0.96 2.1E-05 39.8 6.3 64 185-250 18-86 (259)
290 KOG2920 Predicted methyltransf 89.5 0.31 6.8E-06 43.1 2.9 37 185-222 116-152 (282)
291 TIGR00027 mthyl_TIGR00027 meth 89.3 4.8 0.0001 35.4 10.4 93 185-279 81-182 (260)
292 TIGR00675 dcm DNA-methyltransf 88.5 0.79 1.7E-05 41.5 5.0 71 189-269 1-73 (315)
293 PF00145 DNA_methylase: C-5 cy 88.5 0.58 1.3E-05 41.9 4.1 71 188-269 2-75 (335)
294 KOG2782 Putative SAM dependent 88.3 0.23 5.1E-06 42.3 1.3 81 185-267 43-130 (303)
295 KOG1253 tRNA methyltransferase 87.5 0.23 5E-06 47.1 0.9 76 185-261 109-189 (525)
296 KOG1122 tRNA and rRNA cytosine 87.4 2.5 5.4E-05 39.6 7.4 76 185-263 241-320 (460)
297 PF11312 DUF3115: Protein of u 87.1 0.64 1.4E-05 41.8 3.4 85 186-270 87-215 (315)
298 KOG2352 Predicted spermine/spe 85.5 0.55 1.2E-05 44.6 2.2 75 185-261 295-376 (482)
299 COG1064 AdhP Zn-dependent alco 85.2 2.6 5.6E-05 38.6 6.3 70 185-264 166-238 (339)
300 KOG0822 Protein kinase inhibit 85.0 2.2 4.8E-05 41.1 5.9 74 186-261 368-445 (649)
301 KOG0024 Sorbitol dehydrogenase 84.1 2 4.4E-05 38.9 5.0 43 185-227 169-212 (354)
302 COG0270 Dcm Site-specific DNA 83.7 2.8 6E-05 38.2 6.0 75 186-269 3-81 (328)
303 KOG1099 SAM-dependent methyltr 83.3 2.5 5.4E-05 36.5 5.0 78 185-275 41-140 (294)
304 KOG1098 Putative SAM-dependent 83.1 2.6 5.7E-05 41.3 5.7 36 185-220 44-80 (780)
305 KOG3924 Putative protein methy 82.7 1.7 3.7E-05 40.2 4.1 82 185-266 192-283 (419)
306 KOG1562 Spermidine synthase [A 82.5 1.5 3.3E-05 39.2 3.5 77 185-262 121-202 (337)
307 COG4301 Uncharacterized conser 82.3 14 0.0003 32.4 9.2 92 185-277 78-176 (321)
308 TIGR00497 hsdM type I restrict 82.2 7.3 0.00016 37.7 8.5 79 185-263 217-301 (501)
309 PTZ00357 methyltransferase; Pr 82.1 3.8 8.2E-05 41.0 6.3 75 187-261 702-798 (1072)
310 COG1063 Tdh Threonine dehydrog 81.8 2.8 6.1E-05 38.5 5.3 45 185-229 168-213 (350)
311 COG2933 Predicted SAM-dependen 81.6 4.8 0.0001 35.5 6.2 69 185-264 211-279 (358)
312 PF03514 GRAS: GRAS domain fam 81.4 5.8 0.00012 36.9 7.2 86 185-270 110-215 (374)
313 PF02254 TrkA_N: TrkA-N domain 80.1 4.1 8.9E-05 30.5 4.9 61 194-263 4-70 (116)
314 PRK10458 DNA cytosine methylas 79.0 11 0.00024 36.2 8.4 79 186-269 88-183 (467)
315 PRK08339 short chain dehydroge 78.7 13 0.00028 32.3 8.3 77 185-265 7-95 (263)
316 COG4017 Uncharacterized protei 77.1 16 0.00034 30.8 7.6 70 185-270 44-114 (254)
317 KOG2811 Uncharacterized conser 76.8 8.5 0.00018 35.5 6.5 60 187-249 184-246 (420)
318 PRK09424 pntA NAD(P) transhydr 76.6 5 0.00011 38.9 5.4 43 185-228 164-207 (509)
319 PF07279 DUF1442: Protein of u 76.5 14 0.0003 31.6 7.3 76 185-261 41-121 (218)
320 cd08283 FDH_like_1 Glutathione 75.9 5.7 0.00012 36.7 5.5 44 185-228 184-228 (386)
321 PRK08703 short chain dehydroge 75.7 18 0.0004 30.5 8.3 78 185-265 5-97 (239)
322 PF12242 Eno-Rase_NADH_b: NAD( 75.3 10 0.00023 26.8 5.2 34 185-218 38-73 (78)
323 PRK07063 short chain dehydroge 75.2 18 0.00038 31.0 8.1 78 185-265 6-96 (260)
324 COG0863 DNA modification methy 75.2 12 0.00027 32.9 7.3 46 185-232 222-267 (302)
325 PRK06124 gluconate 5-dehydroge 75.2 18 0.00039 30.8 8.2 77 185-265 10-98 (256)
326 PF03686 UPF0146: Uncharacteri 74.9 6.2 0.00013 30.8 4.5 69 185-268 13-83 (127)
327 PF12692 Methyltransf_17: S-ad 74.8 13 0.00027 30.0 6.3 34 185-218 28-61 (160)
328 PRK05867 short chain dehydroge 74.7 17 0.00037 31.1 7.8 78 185-267 8-98 (253)
329 PRK06172 short chain dehydroge 74.6 19 0.00041 30.7 8.1 76 185-265 6-94 (253)
330 PRK07102 short chain dehydroge 73.6 16 0.00035 31.0 7.4 75 187-264 2-85 (243)
331 PRK07677 short chain dehydroge 73.6 20 0.00044 30.6 8.1 73 187-264 2-87 (252)
332 PRK07904 short chain dehydroge 73.5 16 0.00035 31.4 7.5 78 185-265 7-97 (253)
333 KOG0821 Predicted ribosomal RN 73.3 11 0.00023 32.6 5.8 61 185-249 50-110 (326)
334 PRK07890 short chain dehydroge 72.7 23 0.0005 30.1 8.2 76 185-265 4-92 (258)
335 PF03141 Methyltransf_29: Puta 72.6 4.7 0.0001 38.6 4.0 98 164-271 339-443 (506)
336 PRK07062 short chain dehydroge 72.2 22 0.00049 30.5 8.1 79 185-266 7-98 (265)
337 PRK06125 short chain dehydroge 71.7 25 0.00055 30.1 8.3 78 185-265 6-91 (259)
338 PRK09291 short chain dehydroge 71.5 21 0.00046 30.4 7.7 75 187-265 3-83 (257)
339 PRK09880 L-idonate 5-dehydroge 71.2 8.1 0.00018 35.0 5.2 42 185-227 169-212 (343)
340 COG3315 O-Methyltransferase in 71.2 23 0.0005 31.8 8.0 91 186-279 93-194 (297)
341 PF11899 DUF3419: Protein of u 70.5 14 0.00031 34.4 6.6 44 185-230 35-78 (380)
342 PRK06949 short chain dehydroge 69.9 29 0.00064 29.5 8.3 77 185-265 8-96 (258)
343 PRK05876 short chain dehydroge 69.7 26 0.00055 30.7 7.9 76 185-265 5-93 (275)
344 PRK05854 short chain dehydroge 69.7 29 0.00062 31.1 8.4 80 185-267 13-105 (313)
345 PRK08217 fabG 3-ketoacyl-(acyl 69.5 29 0.00063 29.3 8.1 76 185-264 4-91 (253)
346 COG5379 BtaA S-adenosylmethion 69.0 12 0.00026 33.6 5.5 44 185-230 63-106 (414)
347 PRK07035 short chain dehydroge 68.9 29 0.00062 29.5 8.0 75 185-264 7-94 (252)
348 PRK07454 short chain dehydroge 68.6 32 0.00069 29.0 8.1 78 185-266 5-94 (241)
349 PRK07666 fabG 3-ketoacyl-(acyl 68.6 30 0.00065 29.1 7.9 78 185-266 6-95 (239)
350 PRK07326 short chain dehydroge 68.5 28 0.00062 29.1 7.8 76 185-265 5-92 (237)
351 PRK08213 gluconate 5-dehydroge 68.3 31 0.00066 29.5 8.0 77 185-265 11-99 (259)
352 COG1255 Uncharacterized protei 68.0 19 0.00041 27.7 5.6 64 185-263 13-78 (129)
353 PRK07097 gluconate 5-dehydroge 68.0 31 0.00067 29.7 8.0 77 185-266 9-98 (265)
354 PRK05866 short chain dehydroge 67.3 31 0.00068 30.5 8.1 77 185-266 39-128 (293)
355 COG1086 Predicted nucleoside-d 66.8 40 0.00087 33.1 8.9 85 185-271 249-341 (588)
356 PRK07478 short chain dehydroge 66.7 37 0.00079 28.9 8.2 76 185-265 5-93 (254)
357 PRK06914 short chain dehydroge 66.7 35 0.00076 29.5 8.2 77 186-265 3-91 (280)
358 PRK08267 short chain dehydroge 66.2 26 0.00056 30.0 7.2 73 187-266 2-88 (260)
359 KOG1201 Hydroxysteroid 17-beta 66.0 32 0.00069 30.9 7.6 76 185-266 37-125 (300)
360 PRK06194 hypothetical protein; 65.3 33 0.00072 29.8 7.8 78 185-266 5-94 (287)
361 cd00401 AdoHcyase S-adenosyl-L 65.1 18 0.0004 34.1 6.2 42 185-227 201-243 (413)
362 PRK09072 short chain dehydroge 65.1 38 0.00081 29.1 8.0 76 185-266 4-91 (263)
363 KOG0022 Alcohol dehydrogenase, 64.5 14 0.00031 33.5 5.1 44 185-228 192-236 (375)
364 COG1748 LYS9 Saccharopine dehy 64.5 32 0.00068 32.2 7.6 71 187-264 2-77 (389)
365 PRK05650 short chain dehydroge 64.4 38 0.00083 29.2 7.9 74 188-266 2-88 (270)
366 PRK12826 3-ketoacyl-(acyl-carr 64.2 40 0.00087 28.3 7.9 78 185-266 5-94 (251)
367 PRK06113 7-alpha-hydroxysteroi 64.0 41 0.0009 28.6 8.0 76 185-265 10-98 (255)
368 PRK09242 tropinone reductase; 63.5 43 0.00093 28.6 8.0 78 185-265 8-98 (257)
369 PRK07814 short chain dehydroge 63.2 46 0.001 28.6 8.2 76 185-264 9-96 (263)
370 PRK05786 fabG 3-ketoacyl-(acyl 63.2 44 0.00095 28.0 7.9 75 185-264 4-90 (238)
371 PRK08862 short chain dehydroge 63.0 40 0.00087 28.5 7.6 75 185-264 4-92 (227)
372 PRK09186 flagellin modificatio 63.0 45 0.00097 28.3 8.0 77 185-263 3-91 (256)
373 TIGR03206 benzo_BadH 2-hydroxy 62.8 46 0.001 28.0 8.1 76 185-265 2-90 (250)
374 COG1062 AdhC Zn-dependent alco 62.8 18 0.00039 33.2 5.5 44 185-228 185-229 (366)
375 PLN02780 ketoreductase/ oxidor 62.8 33 0.00072 30.9 7.4 61 185-248 52-115 (320)
376 PRK12384 sorbitol-6-phosphate 62.6 43 0.00093 28.5 7.9 77 187-265 3-91 (259)
377 PRK09496 trkA potassium transp 62.5 60 0.0013 30.5 9.4 69 185-262 230-304 (453)
378 PRK08643 acetoin reductase; Va 62.4 45 0.00097 28.4 7.9 75 187-265 3-89 (256)
379 PRK07109 short chain dehydroge 61.4 46 0.001 30.1 8.2 76 185-265 7-95 (334)
380 PRK13394 3-hydroxybutyrate deh 61.3 46 0.001 28.3 7.8 78 185-266 6-95 (262)
381 PRK07523 gluconate 5-dehydroge 61.2 48 0.001 28.2 7.9 78 185-266 9-98 (255)
382 PRK08589 short chain dehydroge 61.2 47 0.001 28.8 7.9 76 185-266 5-93 (272)
383 COG0300 DltE Short-chain dehyd 61.0 59 0.0013 28.8 8.3 82 185-270 5-99 (265)
384 PF02086 MethyltransfD12: D12 60.8 14 0.00031 31.8 4.5 44 185-230 20-63 (260)
385 PRK08251 short chain dehydroge 60.7 51 0.0011 27.8 7.9 78 187-266 3-92 (248)
386 PRK08277 D-mannonate oxidoredu 60.4 49 0.0011 28.6 7.9 76 185-265 9-97 (278)
387 PRK12939 short chain dehydroge 60.2 56 0.0012 27.4 8.1 77 185-265 6-94 (250)
388 PRK08945 putative oxoacyl-(acy 60.1 49 0.0011 28.0 7.7 78 185-265 11-102 (247)
389 PRK07576 short chain dehydroge 60.0 53 0.0012 28.3 8.0 76 185-264 8-95 (264)
390 PRK06139 short chain dehydroge 59.9 47 0.001 30.1 7.9 76 185-265 6-94 (330)
391 COG1568 Predicted methyltransf 59.7 33 0.00071 30.7 6.3 73 185-261 152-227 (354)
392 PRK03659 glutathione-regulated 59.3 20 0.00042 35.6 5.6 60 194-262 406-471 (601)
393 PRK06197 short chain dehydroge 59.1 55 0.0012 28.9 8.1 80 185-266 15-106 (306)
394 KOG1209 1-Acyl dihydroxyaceton 58.7 47 0.001 28.7 6.9 34 185-218 6-41 (289)
395 cd08237 ribitol-5-phosphate_DH 57.9 20 0.00043 32.5 5.1 43 185-227 163-207 (341)
396 PRK08340 glucose-1-dehydrogena 57.8 49 0.0011 28.3 7.4 72 188-265 2-86 (259)
397 PF02719 Polysacc_synt_2: Poly 57.6 13 0.00028 33.3 3.7 76 194-270 5-92 (293)
398 TIGR01963 PHB_DH 3-hydroxybuty 57.4 57 0.0012 27.5 7.7 74 188-265 3-88 (255)
399 PRK06181 short chain dehydroge 57.4 59 0.0013 27.7 7.8 76 187-266 2-89 (263)
400 KOG2798 Putative trehalase [Ca 56.8 14 0.0003 33.5 3.6 40 185-226 150-189 (369)
401 PRK08303 short chain dehydroge 56.6 49 0.0011 29.5 7.4 74 185-263 7-103 (305)
402 PRK05875 short chain dehydroge 56.5 67 0.0015 27.7 8.1 78 185-264 6-95 (276)
403 PRK05599 hypothetical protein; 56.2 62 0.0013 27.6 7.7 75 188-265 2-87 (246)
404 PRK08085 gluconate 5-dehydroge 56.0 66 0.0014 27.3 7.9 76 185-265 8-96 (254)
405 PRK07024 short chain dehydroge 55.7 48 0.001 28.3 7.0 75 187-266 3-89 (257)
406 PRK12829 short chain dehydroge 55.6 78 0.0017 26.8 8.3 75 185-265 10-96 (264)
407 PRK06935 2-deoxy-D-gluconate 3 55.3 72 0.0016 27.2 8.0 75 185-265 14-101 (258)
408 PRK12481 2-deoxy-D-gluconate 3 55.0 62 0.0013 27.6 7.5 75 185-266 7-94 (251)
409 PRK07453 protochlorophyllide o 54.9 67 0.0015 28.6 8.0 76 185-265 5-93 (322)
410 PRK10669 putative cation:proto 54.6 26 0.00056 34.3 5.6 59 194-261 423-487 (558)
411 PF05711 TylF: Macrocin-O-meth 54.6 35 0.00077 29.8 5.8 65 185-249 74-169 (248)
412 PRK07231 fabG 3-ketoacyl-(acyl 54.4 71 0.0015 26.8 7.8 75 185-265 4-91 (251)
413 cd08230 glucose_DH Glucose deh 54.3 24 0.00052 32.0 5.0 42 185-227 172-217 (355)
414 PRK06200 2,3-dihydroxy-2,3-dih 54.2 61 0.0013 27.7 7.4 73 185-265 5-90 (263)
415 TIGR02415 23BDH acetoin reduct 54.0 72 0.0016 26.9 7.8 74 188-265 2-87 (254)
416 PRK07791 short chain dehydroge 53.8 63 0.0014 28.3 7.5 77 185-266 5-103 (286)
417 KOG1208 Dehydrogenases with di 53.8 98 0.0021 28.0 8.8 83 185-270 34-129 (314)
418 PRK07774 short chain dehydroge 53.5 83 0.0018 26.5 8.1 77 185-265 5-93 (250)
419 PF00107 ADH_zinc_N: Zinc-bind 53.5 17 0.00036 27.5 3.3 33 195-228 1-33 (130)
420 PRK08265 short chain dehydroge 53.3 68 0.0015 27.5 7.6 73 185-265 5-90 (261)
421 PRK12429 3-hydroxybutyrate deh 53.1 84 0.0018 26.5 8.1 78 185-266 3-92 (258)
422 cd01065 NAD_bind_Shikimate_DH 52.7 96 0.0021 24.1 7.8 42 185-228 18-62 (155)
423 PLN02253 xanthoxin dehydrogena 52.6 71 0.0015 27.6 7.6 76 185-265 17-104 (280)
424 PRK03562 glutathione-regulated 52.2 28 0.0006 34.7 5.4 65 187-262 401-471 (621)
425 PRK01438 murD UDP-N-acetylmura 51.9 97 0.0021 29.5 9.0 73 185-266 15-89 (480)
426 PRK06138 short chain dehydroge 51.8 82 0.0018 26.5 7.8 75 185-265 4-91 (252)
427 PRK07074 short chain dehydroge 51.8 75 0.0016 26.9 7.6 73 187-265 3-87 (257)
428 PRK06720 hypothetical protein; 50.8 1.2E+02 0.0025 24.6 8.1 78 185-267 15-105 (169)
429 COG3510 CmcI Cephalosporin hyd 50.7 43 0.00093 28.3 5.3 58 185-249 69-130 (237)
430 PRK12823 benD 1,6-dihydroxycyc 50.5 90 0.002 26.5 7.8 74 185-264 7-93 (260)
431 PRK08226 short chain dehydroge 50.3 85 0.0018 26.7 7.7 77 185-266 5-93 (263)
432 PRK07792 fabG 3-ketoacyl-(acyl 50.3 81 0.0017 28.0 7.7 76 185-265 11-99 (306)
433 cd05188 MDR Medium chain reduc 50.1 38 0.00083 28.6 5.4 42 185-227 134-176 (271)
434 cd08254 hydroxyacyl_CoA_DH 6-h 50.1 34 0.00073 30.3 5.3 42 185-227 165-207 (338)
435 KOG1205 Predicted dehydrogenas 50.1 66 0.0014 28.7 6.9 80 185-267 11-103 (282)
436 TIGR02622 CDP_4_6_dhtase CDP-g 50.0 40 0.00086 30.5 5.7 75 185-264 3-84 (349)
437 KOG2360 Proliferation-associat 50.0 30 0.00065 32.2 4.7 64 185-250 213-277 (413)
438 PLN02989 cinnamyl-alcohol dehy 49.5 57 0.0012 29.0 6.6 79 185-265 4-87 (325)
439 TIGR02356 adenyl_thiF thiazole 48.9 44 0.00096 28.0 5.4 33 185-218 20-54 (202)
440 PF06690 DUF1188: Protein of u 48.7 1.7E+02 0.0037 25.5 8.8 69 185-269 41-110 (252)
441 COG4627 Uncharacterized protei 48.2 7.1 0.00015 31.7 0.4 40 239-278 31-70 (185)
442 KOG1596 Fibrillarin and relate 48.1 45 0.00097 29.3 5.2 60 185-248 156-216 (317)
443 KOG1252 Cystathionine beta-syn 48.1 32 0.0007 31.5 4.6 38 185-222 211-252 (362)
444 PRK05653 fabG 3-ketoacyl-(acyl 47.9 1.1E+02 0.0024 25.4 7.9 77 185-265 4-92 (246)
445 PF00106 adh_short: short chai 47.6 71 0.0015 24.9 6.3 76 188-267 2-92 (167)
446 TIGR03201 dearomat_had 6-hydro 47.5 39 0.00085 30.5 5.3 42 185-227 166-208 (349)
447 KOG2198 tRNA cytosine-5-methyl 47.2 1E+02 0.0022 28.7 7.6 76 185-262 155-243 (375)
448 TIGR01500 sepiapter_red sepiap 47.0 1.1E+02 0.0023 26.1 7.8 61 188-249 2-67 (256)
449 COG0031 CysK Cysteine synthase 46.9 70 0.0015 28.8 6.6 34 186-219 169-206 (300)
450 PRK06180 short chain dehydroge 46.9 91 0.002 27.0 7.4 75 186-267 4-90 (277)
451 PRK09135 pteridine reductase; 46.9 1.2E+02 0.0025 25.4 7.9 78 185-265 5-95 (249)
452 PRK06198 short chain dehydroge 46.5 98 0.0021 26.2 7.5 77 185-265 5-94 (260)
453 COG0569 TrkA K+ transport syst 46.1 76 0.0017 27.1 6.6 66 188-262 2-73 (225)
454 PRK08416 7-alpha-hydroxysteroi 46.1 1.1E+02 0.0025 26.0 7.8 76 185-264 7-96 (260)
455 PRK07831 short chain dehydroge 45.9 1.2E+02 0.0027 25.8 8.0 78 185-265 16-107 (262)
456 TIGR01832 kduD 2-deoxy-D-gluco 45.7 1.1E+02 0.0023 25.8 7.5 76 185-266 4-91 (248)
457 PRK07775 short chain dehydroge 45.3 1.2E+02 0.0027 26.1 8.0 77 185-265 9-97 (274)
458 PRK05872 short chain dehydroge 45.0 1.1E+02 0.0023 26.9 7.6 76 185-266 8-96 (296)
459 PF07101 DUF1363: Protein of u 45.0 8.6 0.00019 28.3 0.4 19 188-206 5-23 (124)
460 TIGR00561 pntA NAD(P) transhyd 44.9 45 0.00098 32.4 5.4 42 185-227 163-205 (511)
461 TIGR03325 BphB_TodD cis-2,3-di 44.3 1.2E+02 0.0025 26.0 7.6 74 185-265 4-89 (262)
462 PRK09496 trkA potassium transp 43.8 61 0.0013 30.4 6.2 65 188-262 2-72 (453)
463 KOG1371 UDP-glucose 4-epimeras 43.8 18 0.0004 32.9 2.4 79 186-267 2-89 (343)
464 PRK05717 oxidoreductase; Valid 43.8 1.2E+02 0.0026 25.7 7.5 75 185-266 9-95 (255)
465 PRK08993 2-deoxy-D-gluconate 3 43.7 1.1E+02 0.0023 26.1 7.2 75 185-265 9-95 (253)
466 PRK05855 short chain dehydroge 43.7 1E+02 0.0023 29.6 7.9 79 185-267 314-404 (582)
467 TIGR02685 pter_reduc_Leis pter 43.6 1.8E+02 0.0039 24.9 8.7 75 188-265 3-94 (267)
468 PRK06701 short chain dehydroge 43.5 1.1E+02 0.0025 26.8 7.5 76 185-265 45-134 (290)
469 PRK12548 shikimate 5-dehydroge 43.2 1.5E+02 0.0032 26.3 8.2 80 185-269 125-213 (289)
470 KOG2918 Carboxymethyl transfer 43.2 90 0.0019 28.4 6.5 41 185-225 87-129 (335)
471 PRK07832 short chain dehydroge 43.0 1.3E+02 0.0027 26.0 7.6 75 188-265 2-88 (272)
472 PRK07067 sorbitol dehydrogenas 42.5 1.1E+02 0.0025 25.9 7.2 74 185-265 5-90 (257)
473 TIGR00936 ahcY adenosylhomocys 42.4 73 0.0016 30.1 6.2 37 185-222 194-231 (406)
474 PRK12824 acetoacetyl-CoA reduc 41.7 1.2E+02 0.0027 25.2 7.3 76 187-265 3-90 (245)
475 PRK07806 short chain dehydroge 41.7 1.6E+02 0.0034 24.7 7.9 77 185-265 5-94 (248)
476 PRK08278 short chain dehydroge 41.6 1.2E+02 0.0026 26.2 7.3 77 185-266 5-101 (273)
477 PRK07201 short chain dehydroge 41.1 1.2E+02 0.0026 30.0 8.0 77 185-265 370-458 (657)
478 PRK14106 murD UDP-N-acetylmura 41.1 1.2E+02 0.0026 28.6 7.6 72 185-265 4-78 (450)
479 TIGR01202 bchC 2-desacetyl-2-h 40.7 51 0.0011 29.3 4.8 42 185-226 144-186 (308)
480 PRK08762 molybdopterin biosynt 40.7 62 0.0013 30.0 5.5 33 185-218 134-168 (376)
481 TIGR00853 pts-lac PTS system, 40.5 45 0.00097 24.4 3.7 57 187-265 4-60 (95)
482 PRK08628 short chain dehydroge 40.5 1.4E+02 0.0029 25.4 7.4 76 185-265 6-93 (258)
483 PRK09273 hypothetical protein; 40.4 47 0.001 28.3 4.2 42 186-228 63-104 (211)
484 PLN02662 cinnamyl-alcohol dehy 40.3 84 0.0018 27.7 6.2 78 185-264 3-85 (322)
485 PRK06114 short chain dehydroge 40.2 1.6E+02 0.0034 25.0 7.8 78 185-266 7-97 (254)
486 PRK07533 enoyl-(acyl carrier p 39.9 1.4E+02 0.003 25.5 7.4 77 185-265 9-98 (258)
487 PRK06940 short chain dehydroge 39.8 1.8E+02 0.0038 25.2 8.1 74 188-266 4-87 (275)
488 PRK08644 thiamine biosynthesis 39.8 2.3E+02 0.005 23.9 8.5 33 185-218 27-61 (212)
489 PRK06953 short chain dehydroge 39.3 1.5E+02 0.0033 24.4 7.4 69 188-266 3-81 (222)
490 PLN03209 translocon at the inn 39.0 1.2E+02 0.0025 30.1 7.2 80 185-265 79-169 (576)
491 TIGR00518 alaDH alanine dehydr 39.0 65 0.0014 29.8 5.4 42 185-227 166-208 (370)
492 PF02737 3HCDH_N: 3-hydroxyacy 38.5 64 0.0014 26.5 4.8 41 189-231 2-44 (180)
493 TIGR01289 LPOR light-dependent 38.4 1.6E+02 0.0034 26.2 7.7 76 186-266 3-92 (314)
494 COG0771 MurD UDP-N-acetylmuram 38.2 68 0.0015 30.7 5.4 75 185-267 6-81 (448)
495 PRK05565 fabG 3-ketoacyl-(acyl 37.9 1.8E+02 0.0038 24.2 7.7 77 185-265 4-93 (247)
496 PRK00421 murC UDP-N-acetylmura 37.8 82 0.0018 29.9 6.0 70 185-267 6-78 (461)
497 PRK03369 murD UDP-N-acetylmura 37.6 1E+02 0.0022 29.6 6.7 70 185-266 11-81 (488)
498 PRK06841 short chain dehydroge 37.6 1.8E+02 0.004 24.4 7.8 74 185-266 14-100 (255)
499 TIGR02632 RhaD_aldol-ADH rhamn 37.5 1.5E+02 0.0033 29.9 8.1 80 185-266 413-504 (676)
500 PRK06035 3-hydroxyacyl-CoA deh 37.4 78 0.0017 28.0 5.5 41 187-229 4-46 (291)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=6.1e-18 Score=145.48 Aligned_cols=116 Identities=27% Similarity=0.371 Sum_probs=94.1
Q ss_pred CCcchhHHhHH----HHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 048398 156 YASSVDKANDV----MRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKK 231 (280)
Q Consensus 156 ~~~~~~~~~~~----l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~ 231 (280)
-+..|+..+.. +...|.+.+....... ++.+|||||||||.++..+++..+.++|+|+|+|+.|++.|+++..+
T Consensus 20 ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~--~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 20 VAKKYDLMNDLMSFGLHRLWRRALISLLGIK--PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred hHHHHHhhcccccCcchHHHHHHHHHhhCCC--CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc
Confidence 33445444432 3445555555554222 58899999999999999999998888999999999999999999987
Q ss_pred cCCCCCCeEEEEeCCCCCCCCCCceeeEEechhhhhCCChhhhh
Q 048398 232 GGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYVVCLLSNSEHLS 275 (280)
Q Consensus 232 ~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d~~~~~ 275 (280)
. ...+++|+++|++++|+++++||+|.+.+.|++++|.++..
T Consensus 98 ~--~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL 139 (238)
T COG2226 98 K--GVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKAL 139 (238)
T ss_pred c--CccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHH
Confidence 5 23349999999999999999999999999999999988754
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=2.1e-17 Score=142.92 Aligned_cols=88 Identities=34% Similarity=0.517 Sum_probs=66.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
++.+|||+|||||.++..+++.. |..+|+|+|+|+.|++.|+++.... ...+|+|+++|++++|+++++||+|++.+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~--~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE--GLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT--T--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh--CCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 67899999999999999998875 5689999999999999999999876 34599999999999999999999999999
Q ss_pred hhhhCCChhhh
Q 048398 264 VVCLLSNSEHL 274 (280)
Q Consensus 264 vlh~l~d~~~~ 274 (280)
.+++++|..+.
T Consensus 125 glrn~~d~~~~ 135 (233)
T PF01209_consen 125 GLRNFPDRERA 135 (233)
T ss_dssp -GGG-SSHHHH
T ss_pred hHHhhCCHHHH
Confidence 99999997763
No 3
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.67 E-value=4.8e-17 Score=138.06 Aligned_cols=121 Identities=23% Similarity=0.286 Sum_probs=93.1
Q ss_pred HHHHHHhcCCCCcchhHHhH--HHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHH
Q 048398 146 DLSMTRRAIPYASSVDKAND--VMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLA 223 (280)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~ 223 (280)
...++..||+....|...|. .++..|+.........+ .+.+|||||||.|.++..+++. +++|+|+|+++.+|+
T Consensus 20 F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l--~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~ 95 (243)
T COG2227 20 FEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDL--PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIE 95 (243)
T ss_pred HHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCC--CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHH
Confidence 34577778875555544433 24444443332221112 6889999999999999999999 799999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechhhhhCCChhh
Q 048398 224 VAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYVVCLLSNSEH 273 (280)
Q Consensus 224 ~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d~~~ 273 (280)
.|+.+..++ .-.+++.+...+++....++||+|+|..|++|+++++.
T Consensus 96 ~Ak~ha~e~---gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~ 142 (243)
T COG2227 96 VAKLHALES---GVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPES 142 (243)
T ss_pred HHHHhhhhc---cccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHH
Confidence 999998877 33577999999888555589999999999999999986
No 4
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.67 E-value=5.8e-16 Score=136.60 Aligned_cols=187 Identities=12% Similarity=0.114 Sum_probs=120.2
Q ss_pred HHHHHHHHhhhcch--HHHHHHhHHHHHHHhhhhCCCC-cHHhHHHhhhhhhhhhhhhhccCCCCCccccCCCCCcCCCC
Q 048398 56 LSRLVGALISFKPI--SAVLKFGARQVLISTAEKNDIP-WRAMTKEILESDVYKEMESIQNRSIVYPAYYLNPFHAYDDG 132 (280)
Q Consensus 56 ~~~~~~~~~~~~p~--~~~~~~~ar~~l~~~~~~~gi~-w~~~~~~l~~~~w~~~~~~v~~~~~~~~~~~~~~fh~~~~g 132 (280)
+.++.+.+....-+ ...-+......+.++.+..|++ ..+++..|....-..+++.+.+.......++.+.-+.
T Consensus 4 ~~~~~~~i~~~~Gi~~~~~k~~~l~~rl~~r~~~~~~~~~~~y~~~l~~~~~~~e~~~l~~~lti~~T~FfR~~~~---- 79 (264)
T smart00138 4 FRRFCDLIYSRTGIVLTDYKRTLLQSRLSRRLRVLGLKDFSEYLELLTSHRGEEELAELLDLMTTNETRFFRESKH---- 79 (264)
T ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCcHHHHHHHHHHhhcCCCcccCCcHH----
Confidence 34444444443322 2333444556777788888877 6777788865321245555555555555554442221
Q ss_pred cccccchhhhhhhHHHHHHhcCCCCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCCh----hHHHHHhhCC
Q 048398 133 NLSWLAAAEAEAADLSMTRRAIPYASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGV----STKCLADKFP 208 (280)
Q Consensus 133 ~~~w~~a~e~e~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~----~a~~l~~~~p 208 (280)
.+.+...++..+.... ... ++.+|||+|||+|. +++.+++.++
T Consensus 80 -------------------------------~~~l~~~vlp~l~~~~-~~~-~~~ri~d~GCgtGee~YslA~~l~e~~~ 126 (264)
T smart00138 80 -------------------------------FEALEEKVLPLLIASR-RHG-RRVRIWSAGCSTGEEPYSLAMLLAETLP 126 (264)
T ss_pred -------------------------------HHHHHHHHhHHHHHhc-CCC-CCEEEEeccccCChHHHHHHHHHHHHhh
Confidence 1123344444333221 111 56799999999996 6667777654
Q ss_pred -----CCeEEEEeCCHHHHHHHHHHHH------h------------cC-------CCCCCeEEEEeCCCCCCCCCCceee
Q 048398 209 -----SAKVTGLDLSPYFLAVAQLKEK------K------------GG-------PRKNPISWVHAIGEDSGLPSKSFDV 258 (280)
Q Consensus 209 -----~~~v~gvDisp~~l~~A~~~~~------~------------~~-------~~~~~v~~~~~d~~~~~~~~~sfDl 258 (280)
+.+|+|+|+|+.|++.|++..- . .+ ....+|+|.++|+.+.+++.++||+
T Consensus 127 ~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~ 206 (264)
T smart00138 127 KAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDL 206 (264)
T ss_pred hcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCE
Confidence 4789999999999999998531 0 00 0124799999999998777789999
Q ss_pred EEechhhhhCCChhhhhhhhc
Q 048398 259 VSLSYVVCLLSNSEHLSVERC 279 (280)
Q Consensus 259 Vi~~~vlh~l~d~~~~~~l~~ 279 (280)
|+|+++++|++++.+..++++
T Consensus 207 I~crnvl~yf~~~~~~~~l~~ 227 (264)
T smart00138 207 IFCRNVLIYFDEPTQRKLLNR 227 (264)
T ss_pred EEechhHHhCCHHHHHHHHHH
Confidence 999999999998877666553
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.65 E-value=2.4e-15 Score=132.57 Aligned_cols=90 Identities=24% Similarity=0.340 Sum_probs=77.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKG-GPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~-~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
++.+|||+|||+|.++..+++.+ |..+|+|+|+|+.|++.|+++.... .....+++++++|++++|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 57799999999999999998875 5679999999999999998875321 013458999999999999999999999999
Q ss_pred hhhhhCCChhhh
Q 048398 263 YVVCLLSNSEHL 274 (280)
Q Consensus 263 ~vlh~l~d~~~~ 274 (280)
+++||++++...
T Consensus 153 ~~l~~~~d~~~~ 164 (261)
T PLN02233 153 YGLRNVVDRLKA 164 (261)
T ss_pred cccccCCCHHHH
Confidence 999999987764
No 6
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.64 E-value=2.6e-15 Score=127.52 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=73.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||+|.++..+++..|+.+++|+|+|+.+++.|+++.. ++.+.++|+.+ ++++++||+|+++.+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 6778999999999999999998788999999999999999987642 46788999888 788889999999999
Q ss_pred hhhCCChhhhhhh
Q 048398 265 VCLLSNSEHLSVE 277 (280)
Q Consensus 265 lh~l~d~~~~~~l 277 (280)
++|+++.....++
T Consensus 115 L~hl~p~~~~~~l 127 (204)
T TIGR03587 115 LIHINPDNLPTAY 127 (204)
T ss_pred hhhCCHHHHHHHH
Confidence 9999865444443
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.63 E-value=2.2e-15 Score=115.20 Aligned_cols=84 Identities=30% Similarity=0.472 Sum_probs=71.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCC-CCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIG-EDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~sfDlVi~~~ 263 (280)
++.+|||||||+|.+++.+++.+|+++|+|+|+||.+++.|++++... +...+++|+++|+ ..... .++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-GLSDRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-TTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence 357899999999999999999888999999999999999999999555 4678999999999 44433 34699999999
Q ss_pred -hhhhCCC
Q 048398 264 -VVCLLSN 270 (280)
Q Consensus 264 -vlh~l~d 270 (280)
.++++.+
T Consensus 79 ~~~~~~~~ 86 (112)
T PF12847_consen 79 FTLHFLLP 86 (112)
T ss_dssp GSGGGCCH
T ss_pred Cccccccc
Confidence 5665544
No 8
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.63 E-value=2.6e-15 Score=121.53 Aligned_cols=86 Identities=28% Similarity=0.420 Sum_probs=76.1
Q ss_pred CCCcEEEECCCCChhHHHHH-hhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLA-DKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~-~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~sfDlVi~ 261 (280)
+..+|||+|||+|.++..++ +.+|+.+++|+|+|+.|++.|+.+++.. ...+++|+++|+++++ ++ ++||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~--~~~ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL--GLDNIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT--TSTTEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc--cccccceEEeehhccccccC-CCeeEEEE
Confidence 57899999999999999999 5678899999999999999999998877 3458999999999976 55 68999999
Q ss_pred chhhhhCCChhh
Q 048398 262 SYVVCLLSNSEH 273 (280)
Q Consensus 262 ~~vlh~l~d~~~ 273 (280)
..++||++++..
T Consensus 80 ~~~l~~~~~~~~ 91 (152)
T PF13847_consen 80 NGVLHHFPDPEK 91 (152)
T ss_dssp ESTGGGTSHHHH
T ss_pred cCchhhccCHHH
Confidence 999999998865
No 9
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.63 E-value=1e-15 Score=136.12 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=101.0
Q ss_pred HHhHHHhhhhhhhhhhhhhccCCCCCccccCC-CCCcCCC--CcccccchhhhhhhHHHHHHhcCCCCcchhHHhHHHHH
Q 048398 93 RAMTKEILESDVYKEMESIQNRSIVYPAYYLN-PFHAYDD--GNLSWLAAAEAEAADLSMTRRAIPYASSVDKANDVMRG 169 (280)
Q Consensus 93 ~~~~~~l~~~~w~~~~~~v~~~~~~~~~~~~~-~fh~~~~--g~~~w~~a~e~e~a~~~~~~~~~~~~~~~~~~~~~l~~ 169 (280)
.-.++.+.++||...|..-..|...-+..+-. +++.+.. +.... .+++...|++++|..++
T Consensus 86 ~~~~~~~~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I----------------~idPg~AFGTG~H~TT~ 149 (295)
T PF06325_consen 86 EIEIEEIEEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVI----------------EIDPGMAFGTGHHPTTR 149 (295)
T ss_dssp --EEEE--HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEE----------------EESTTSSS-SSHCHHHH
T ss_pred ceEEEEeccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEE----------------EECCCCcccCCCCHHHH
Confidence 33457888999999988776666555544444 4444432 21101 45688899999999999
Q ss_pred HHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC
Q 048398 170 NWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS 249 (280)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~ 249 (280)
.+++.|.+... ++++|||+|||+|.+++..++.+ ..+|+|+|++|.+++.|++|+..| +...++.+. ...+
T Consensus 150 lcl~~l~~~~~----~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N-~~~~~~~v~--~~~~- 220 (295)
T PF06325_consen 150 LCLELLEKYVK----PGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELN-GVEDRIEVS--LSED- 220 (295)
T ss_dssp HHHHHHHHHSS----TTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHT-T-TTCEEES--CTSC-
T ss_pred HHHHHHHHhcc----CCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHc-CCCeeEEEE--Eecc-
Confidence 99999988854 67899999999999999999984 348999999999999999999999 566666542 2222
Q ss_pred CCCCCceeeEEechhhh
Q 048398 250 GLPSKSFDVVSLSYVVC 266 (280)
Q Consensus 250 ~~~~~sfDlVi~~~vlh 266 (280)
...++||+|++|....
T Consensus 221 -~~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 221 -LVEGKFDLVVANILAD 236 (295)
T ss_dssp -TCCS-EEEEEEES-HH
T ss_pred -cccccCCEEEECCCHH
Confidence 3357899999986554
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=4e-15 Score=134.33 Aligned_cols=87 Identities=26% Similarity=0.370 Sum_probs=76.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||+|.++..+++. +++|+|+|+++.+++.|+.+.... +...+++++++|++++++++++||+|++..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~-~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMD-PVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc-CcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 4568999999999999999875 789999999999999999887654 2345899999999998877789999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
+||++++...
T Consensus 208 LeHv~d~~~~ 217 (322)
T PLN02396 208 IEHVANPAEF 217 (322)
T ss_pred HHhcCCHHHH
Confidence 9999997763
No 11
>PRK05785 hypothetical protein; Provisional
Probab=99.62 E-value=3.9e-15 Score=128.45 Aligned_cols=79 Identities=24% Similarity=0.257 Sum_probs=70.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
.+.+|||||||||.++..+++.+ +.+|+|+|+|+.|++.|+++ ..++++|++++|+++++||+|++.++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecCh
Confidence 56799999999999999999886 57999999999999998753 13678999999999999999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
+||++|+++.
T Consensus 120 l~~~~d~~~~ 129 (226)
T PRK05785 120 LHASDNIEKV 129 (226)
T ss_pred hhccCCHHHH
Confidence 9999997764
No 12
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.62 E-value=1.1e-15 Score=115.27 Aligned_cols=88 Identities=34% Similarity=0.531 Sum_probs=72.4
Q ss_pred EEEECCCCChhHHHHHhhC---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec-hh
Q 048398 189 ILDIGCSVGVSTKCLADKF---PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS-YV 264 (280)
Q Consensus 189 ILDiGcGtG~~a~~l~~~~---p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~-~v 264 (280)
|||+|||+|..+..+.+.+ |..+++|+|+|+.|++.++++.... ..+++|+++|+.+++..+++||+|++. .+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~---~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED---GPKVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT---TTTSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc---CCceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999999986 4589999999999999999998765 238999999999988778899999995 55
Q ss_pred hhhCCChhhhhhhhc
Q 048398 265 VCLLSNSEHLSVERC 279 (280)
Q Consensus 265 lh~l~d~~~~~~l~~ 279 (280)
++|+++++...+++.
T Consensus 78 ~~~~~~~~~~~ll~~ 92 (101)
T PF13649_consen 78 LHHLSPEELEALLRR 92 (101)
T ss_dssp GGGSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 999998888776654
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.60 E-value=6.4e-15 Score=108.61 Aligned_cols=78 Identities=37% Similarity=0.518 Sum_probs=67.3
Q ss_pred EEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechhhhhCC
Q 048398 190 LDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYVVCLLS 269 (280)
Q Consensus 190 LDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~ 269 (280)
||+|||+|..+..+++. ++.+++|+|+++.+++.++++.... ++.++++|++++|+++++||+|++..++||++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceeecc
Confidence 89999999999999998 7889999999999999999987654 56799999999999999999999999999996
Q ss_pred Chhh
Q 048398 270 NSEH 273 (280)
Q Consensus 270 d~~~ 273 (280)
+..+
T Consensus 75 ~~~~ 78 (95)
T PF08241_consen 75 DPEA 78 (95)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 6555
No 14
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=1.4e-14 Score=126.69 Aligned_cols=91 Identities=19% Similarity=0.313 Sum_probs=77.9
Q ss_pred CCCcEEEECCCCChhHHHHHhh--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADK--FPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~--~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
+..+|||||||+|..+..+++. .|+++++|+|+|+.|++.|++++... +...+++++++|+.+++++ .+|+|+++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-KAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 6679999999999999998874 57899999999999999999999876 3456899999999987664 48999999
Q ss_pred hhhhhCCChhhhhhhh
Q 048398 263 YVVCLLSNSEHLSVER 278 (280)
Q Consensus 263 ~vlh~l~d~~~~~~l~ 278 (280)
+++||+++.++..+++
T Consensus 133 ~~l~~l~~~~~~~~l~ 148 (247)
T PRK15451 133 FTLQFLEPSERQALLD 148 (247)
T ss_pred hHHHhCCHHHHHHHHH
Confidence 9999998776655544
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.59 E-value=2.1e-14 Score=131.14 Aligned_cols=88 Identities=25% Similarity=0.346 Sum_probs=79.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||+|.++..+++.+ +++|+|+|+|+.+++.|+++.... +..++++|+++|+.++++++++||+|++..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~-g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ-GLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 56799999999999999999987 789999999999999999998776 4556899999999999999999999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
+||+++..+.
T Consensus 196 ~~h~~d~~~~ 205 (340)
T PLN02244 196 GEHMPDKRKF 205 (340)
T ss_pred hhccCCHHHH
Confidence 9999987653
No 16
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.58 E-value=2.7e-14 Score=123.39 Aligned_cols=88 Identities=24% Similarity=0.360 Sum_probs=78.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
++.+|||+|||+|.++..+++.. |+.+|+|+|+++.+++.|++++... ..++++++++|+++.++++++||+|++.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA--GLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc--CCCceEEEEechhcCCCCCCCccEEEEec
Confidence 56799999999999999999875 6789999999999999999998765 34689999999999888888999999999
Q ss_pred hhhhCCChhhh
Q 048398 264 VVCLLSNSEHL 274 (280)
Q Consensus 264 vlh~l~d~~~~ 274 (280)
++|++++..++
T Consensus 123 ~l~~~~~~~~~ 133 (231)
T TIGR02752 123 GLRNVPDYMQV 133 (231)
T ss_pred ccccCCCHHHH
Confidence 99999987654
No 17
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=6.8e-15 Score=129.96 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=83.5
Q ss_pred cCCCCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 048398 153 AIPYASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKG 232 (280)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~ 232 (280)
.+++...|++++|..+..|++.+.+... ++++|||+|||+|.+++++++.+ ..+++|+|++|.+++.|++|+..|
T Consensus 134 ~lDPGlAFGTG~HpTT~lcL~~Le~~~~----~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N 208 (300)
T COG2264 134 ELDPGLAFGTGTHPTTSLCLEALEKLLK----KGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLN 208 (300)
T ss_pred EEccccccCCCCChhHHHHHHHHHHhhc----CCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHc
Confidence 3467788999999999999999998875 78999999999999999999984 347999999999999999999998
Q ss_pred CCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 233 GPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 233 ~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+....++....+.... ...++||+|++|-.
T Consensus 209 -~v~~~~~~~~~~~~~~-~~~~~~DvIVANIL 238 (300)
T COG2264 209 -GVELLVQAKGFLLLEV-PENGPFDVIVANIL 238 (300)
T ss_pred -CCchhhhcccccchhh-cccCcccEEEehhh
Confidence 3332232333333332 23468999999864
No 18
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=1.5e-14 Score=126.94 Aligned_cols=80 Identities=28% Similarity=0.405 Sum_probs=71.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.|+++ +++++++|+++++ ++++||+|+++.+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~~fD~v~~~~~ 98 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PKPDTDVVVSNAA 98 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CCCCceEEEEehh
Confidence 67899999999999999999999999999999999999998653 4789999998873 5678999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
+||++++..+
T Consensus 99 l~~~~d~~~~ 108 (255)
T PRK14103 99 LQWVPEHADL 108 (255)
T ss_pred hhhCCCHHHH
Confidence 9999987653
No 19
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.55 E-value=3.8e-14 Score=123.24 Aligned_cols=91 Identities=16% Similarity=0.282 Sum_probs=77.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
+..+|||+|||+|.++..+++.+ |+++++|+|+|+.|++.|++++... +...+++++++|+.+++++ .+|+|+++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-HSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 56789999999999999999864 7899999999999999999998765 3445799999999988765 48999999
Q ss_pred hhhhhCCChhhhhhhh
Q 048398 263 YVVCLLSNSEHLSVER 278 (280)
Q Consensus 263 ~vlh~l~d~~~~~~l~ 278 (280)
+++||+++.++..+++
T Consensus 130 ~~l~~~~~~~~~~~l~ 145 (239)
T TIGR00740 130 FTLQFLPPEDRIALLT 145 (239)
T ss_pred cchhhCCHHHHHHHHH
Confidence 9999998776655544
No 20
>PRK06202 hypothetical protein; Provisional
Probab=99.55 E-value=2e-14 Score=124.43 Aligned_cols=88 Identities=24% Similarity=0.310 Sum_probs=72.4
Q ss_pred CCCcEEEECCCCChhHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADK----FPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~----~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi 260 (280)
++.+|||||||+|.++..+++. +++.+|+|+|+|+.|++.|+++.... ++.+.+++...++.++++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCccEEE
Confidence 6679999999999999888754 45679999999999999998875433 57788888777766778999999
Q ss_pred echhhhhCCChhhhhhh
Q 048398 261 LSYVVCLLSNSEHLSVE 277 (280)
Q Consensus 261 ~~~vlh~l~d~~~~~~l 277 (280)
+++++||+++++...++
T Consensus 135 ~~~~lhh~~d~~~~~~l 151 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLL 151 (232)
T ss_pred ECCeeecCChHHHHHHH
Confidence 99999999987643443
No 21
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.54 E-value=5.7e-14 Score=119.68 Aligned_cols=118 Identities=25% Similarity=0.330 Sum_probs=92.9
Q ss_pred CcchhHHhHHHHHHHHHHHHHHhhhhcC--CCCcEEEECCCCChhHHHHHhhCCC------CeEEEEeCCHHHHHHHHHH
Q 048398 157 ASSVDKANDVMRGNWLQAIEKHHQQYAG--EIRDILDIGCSVGVSTKCLADKFPS------AKVTGLDLSPYFLAVAQLK 228 (280)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~--~~~~ILDiGcGtG~~a~~l~~~~p~------~~v~gvDisp~~l~~A~~~ 228 (280)
+..|+.+++.+.-..++...+....... +..++||++||||-.++.+.+..+. .+|+++|++|+|+++++++
T Consensus 70 A~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 70 AKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 3346666666554444333333322111 6689999999999999999998766 7999999999999999999
Q ss_pred HHhcCCCCC--CeEEEEeCCCCCCCCCCceeeEEechhhhhCCChhhhh
Q 048398 229 EKKGGPRKN--PISWVHAIGEDSGLPSKSFDVVSLSYVVCLLSNSEHLS 275 (280)
Q Consensus 229 ~~~~~~~~~--~v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d~~~~~ 275 (280)
..+. +... ++.|+++|++++||++++||.+.+.+.+.++++.++..
T Consensus 150 a~~~-~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l 197 (296)
T KOG1540|consen 150 AKKR-PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKAL 197 (296)
T ss_pred Hhhc-CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHH
Confidence 8665 3333 49999999999999999999999999999999998854
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=4.1e-14 Score=119.58 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=75.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++.... ...++++.++|+.+.+++ ++||+|+++.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~--~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~ 104 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAE--NLDNLHTAVVDLNNLTFD-GEYDFILSTVV 104 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHc--CCCcceEEecChhhCCcC-CCcCEEEEecc
Confidence 5689999999999999999987 679999999999999999988776 345689999999887664 57999999999
Q ss_pred hhhCCChhhhhhh
Q 048398 265 VCLLSNSEHLSVE 277 (280)
Q Consensus 265 lh~l~d~~~~~~l 277 (280)
+||+++.....++
T Consensus 105 ~~~~~~~~~~~~l 117 (197)
T PRK11207 105 LMFLEAKTIPGLI 117 (197)
T ss_pred hhhCCHHHHHHHH
Confidence 9999865554443
No 23
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=5e-14 Score=123.75 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=76.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-CCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-LPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~sfDlVi~~~ 263 (280)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.... +...+++++++|+.+++ +++++||+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~-g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAK-GVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhc-CCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 6789999999999999999987 689999999999999999998876 45578999999998764 4567899999999
Q ss_pred hhhhCCChhh
Q 048398 264 VVCLLSNSEH 273 (280)
Q Consensus 264 vlh~l~d~~~ 273 (280)
++||++++..
T Consensus 121 vl~~~~~~~~ 130 (255)
T PRK11036 121 VLEWVADPKS 130 (255)
T ss_pred HHHhhCCHHH
Confidence 9999998765
No 24
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=120.95 Aligned_cols=82 Identities=30% Similarity=0.434 Sum_probs=74.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
.+.+|.|+|||+|..+..|+++||++.|+|+|-|+.|++.|++++ .+++|..+|+... .|+.++|++++|.+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w-~p~~~~dllfaNAv 101 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTW-KPEQPTDLLFANAV 101 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhc-CCCCccchhhhhhh
Confidence 688999999999999999999999999999999999999997763 5789999999998 56778999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
||++||--.+
T Consensus 102 lqWlpdH~~l 111 (257)
T COG4106 102 LQWLPDHPEL 111 (257)
T ss_pred hhhccccHHH
Confidence 9999986553
No 25
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.50 E-value=5.7e-14 Score=120.33 Aligned_cols=84 Identities=27% Similarity=0.332 Sum_probs=71.1
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC----CCeEEEEeCCCCCCCCCCceeeEEe
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRK----NPISWVHAIGEDSGLPSKSFDVVSL 261 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~sfDlVi~ 261 (280)
+++|||+|||+|.++..|++. +++|+|+|+++.|++.|++....++... .++++.+.+++.. .+.||.|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeee
Confidence 477999999999999999999 8999999999999999999965543222 2578888888886 345999999
Q ss_pred chhhhhCCChhhh
Q 048398 262 SYVVCLLSNSEHL 274 (280)
Q Consensus 262 ~~vlh~l~d~~~~ 274 (280)
..|++|+.|++..
T Consensus 165 sevleHV~dp~~~ 177 (282)
T KOG1270|consen 165 SEVLEHVKDPQEF 177 (282)
T ss_pred HHHHHHHhCHHHH
Confidence 9999999887763
No 26
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=1.9e-13 Score=120.65 Aligned_cols=88 Identities=25% Similarity=0.420 Sum_probs=75.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..+|||||||+|..+..+++.+ +++|+|+|+|+.+++.|+++... ..++.|+++|+...++++++||+|++..+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~~~~~FD~V~s~~~ 126 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDFPENTFDMIYSRDA 126 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCCCCCCeEEEEEhhh
Confidence 67899999999999999998765 67999999999999999988643 35799999999988888889999999999
Q ss_pred hhhCCChhhhhhh
Q 048398 265 VCLLSNSEHLSVE 277 (280)
Q Consensus 265 lh~l~d~~~~~~l 277 (280)
++|++..++..++
T Consensus 127 l~h~~~~d~~~~l 139 (263)
T PTZ00098 127 ILHLSYADKKKLF 139 (263)
T ss_pred HHhCCHHHHHHHH
Confidence 9999754444443
No 27
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.48 E-value=4.5e-13 Score=114.93 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..+|||+|||+|.++..+++. +.+|+|+|+|+.++..|++++... +...++.|.++|+...+ ++||+|++..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGR-DVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 6789999999999999999986 679999999999999999998765 23358999999998874 68999999999
Q ss_pred hhhCCChhh
Q 048398 265 VCLLSNSEH 273 (280)
Q Consensus 265 lh~l~d~~~ 273 (280)
++|+++...
T Consensus 129 l~~~~~~~~ 137 (219)
T TIGR02021 129 LIHYPASDM 137 (219)
T ss_pred HHhCCHHHH
Confidence 999976544
No 28
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=2.6e-13 Score=118.74 Aligned_cols=81 Identities=27% Similarity=0.385 Sum_probs=71.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..+|||+|||+|.++..+++. +.+++|+|+|+.|++.|+++.. .+.++++|++.+++++++||+|+++.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~~~~~fD~V~s~~~ 112 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPLATATFDLAWSNLA 112 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcCCCCcEEEEEECch
Confidence 5678999999999999998875 6899999999999999987742 346899999999888889999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
+|++++...+
T Consensus 113 l~~~~d~~~~ 122 (251)
T PRK10258 113 VQWCGNLSTA 122 (251)
T ss_pred hhhcCCHHHH
Confidence 9999887653
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.48 E-value=5.8e-13 Score=114.92 Aligned_cols=84 Identities=27% Similarity=0.426 Sum_probs=75.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||+|||+|.++..+++.+|..+++|+|+++.+++.++.+.. .++.++.+|+++.++++++||+|+++++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~~~~ 107 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVSNLA 107 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence 5679999999999999999999988899999999999999887753 3689999999998888889999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
+||+++...+
T Consensus 108 l~~~~~~~~~ 117 (240)
T TIGR02072 108 LQWCDDLSQA 117 (240)
T ss_pred hhhccCHHHH
Confidence 9999887653
No 30
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.47 E-value=2.8e-13 Score=114.29 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=71.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++...+ +. ++++..+|+...+++ ++||+|+++.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~-~~--~v~~~~~d~~~~~~~-~~fD~I~~~~~ 103 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARE-NL--PLRTDAYDINAAALN-EDYDFIFSTVV 103 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHh-CC--CceeEeccchhcccc-CCCCEEEEecc
Confidence 5679999999999999999987 689999999999999999988765 22 478888888766654 57999999999
Q ss_pred hhhCCChhhhhh
Q 048398 265 VCLLSNSEHLSV 276 (280)
Q Consensus 265 lh~l~d~~~~~~ 276 (280)
+||+++.....+
T Consensus 104 ~~~~~~~~~~~~ 115 (195)
T TIGR00477 104 FMFLQAGRVPEI 115 (195)
T ss_pred cccCCHHHHHHH
Confidence 999976554433
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=3.5e-13 Score=118.37 Aligned_cols=81 Identities=28% Similarity=0.461 Sum_probs=71.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||+|.++..+++.+|+.+|+|+|+|+.|++.|+++. .++.|+.+|+.... +.++||+|+++.+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~-~~~~fD~v~~~~~ 102 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ-PPQALDLIFANAS 102 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-CCCCccEEEEccC
Confidence 678999999999999999999998899999999999999998773 35789999998763 4568999999999
Q ss_pred hhhCCChhh
Q 048398 265 VCLLSNSEH 273 (280)
Q Consensus 265 lh~l~d~~~ 273 (280)
+||+++...
T Consensus 103 l~~~~d~~~ 111 (258)
T PRK01683 103 LQWLPDHLE 111 (258)
T ss_pred hhhCCCHHH
Confidence 999998655
No 32
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.46 E-value=1.9e-13 Score=119.73 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=101.5
Q ss_pred HHhHHHhhhhhhhhhhhhhccCCCCCccccCC-CCCcCCC-CcccccchhhhhhhHHHHHHhcCCCCcchhHHhHHHHHH
Q 048398 93 RAMTKEILESDVYKEMESIQNRSIVYPAYYLN-PFHAYDD-GNLSWLAAAEAEAADLSMTRRAIPYASSVDKANDVMRGN 170 (280)
Q Consensus 93 ~~~~~~l~~~~w~~~~~~v~~~~~~~~~~~~~-~fh~~~~-g~~~w~~a~e~e~a~~~~~~~~~~~~~~~~~~~~~l~~~ 170 (280)
.-.++.+.+.||...|..-..+...-+..+.. .++.+.. +... -.+++...|..+++..+..
T Consensus 45 ~~~~~~~~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~----------------i~i~p~~afgtg~h~tt~~ 108 (250)
T PRK00517 45 TYTIEEVEDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEIN----------------IELDPGMAFGTGTHPTTRL 108 (250)
T ss_pred ceEEEEcCchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEE----------------EEECCCCccCCCCCHHHHH
Confidence 33456788899999888766665554444443 3444432 1111 1456777899999988888
Q ss_pred HHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC
Q 048398 171 WLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG 250 (280)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~ 250 (280)
++..+..... ++.+|||+|||+|.+++.+++.+ ..+|+|+|+||.+++.|++++..+ +...++.+..++
T Consensus 109 ~l~~l~~~~~----~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~~-~~~~~~~~~~~~----- 177 (250)
T PRK00517 109 CLEALEKLVL----PGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAELN-GVELNVYLPQGD----- 177 (250)
T ss_pred HHHHHHhhcC----CCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc-CCCceEEEccCC-----
Confidence 8877765532 67899999999999999888764 346999999999999999999887 333344443332
Q ss_pred CCCCceeeEEechhhhh
Q 048398 251 LPSKSFDVVSLSYVVCL 267 (280)
Q Consensus 251 ~~~~sfDlVi~~~vlh~ 267 (280)
.+||+|+++...+.
T Consensus 178 ---~~fD~Vvani~~~~ 191 (250)
T PRK00517 178 ---LKADVIVANILANP 191 (250)
T ss_pred ---CCcCEEEEcCcHHH
Confidence 27999999865443
No 33
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.45 E-value=6e-13 Score=118.94 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=85.7
Q ss_pred cCCCCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 048398 153 AIPYASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKG 232 (280)
Q Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~ 232 (280)
.+++...|+.+.+..+..+++.+..... ++.+|||+|||+|.+++.+++.+ ..+|+|+|+++.+++.|++++..+
T Consensus 131 ~ldpg~aFgtG~h~tt~l~l~~l~~~~~----~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n 205 (288)
T TIGR00406 131 MLDPGLAFGTGTHPTTSLCLEWLEDLDL----KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELN 205 (288)
T ss_pred EECCCCcccCCCCHHHHHHHHHHHhhcC----CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc
Confidence 4567788999999998888877766542 56899999999999999988763 458999999999999999999887
Q ss_pred CCCCCCeEEEEeCCCCCCCCCCceeeEEechhhhhC
Q 048398 233 GPRKNPISWVHAIGEDSGLPSKSFDVVSLSYVVCLL 268 (280)
Q Consensus 233 ~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l 268 (280)
+...++.+..++... ..+++||+|+++.+.+.+
T Consensus 206 -~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~~~l 238 (288)
T TIGR00406 206 -QVSDRLQVKLIYLEQ--PIEGKADVIVANILAEVI 238 (288)
T ss_pred -CCCcceEEEeccccc--ccCCCceEEEEecCHHHH
Confidence 455567777766333 335689999998766544
No 34
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.45 E-value=6.8e-13 Score=114.33 Aligned_cols=87 Identities=25% Similarity=0.258 Sum_probs=72.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.... +...+++|.++|+.. .+++||+|++..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEA-GLAGNITFEVGDLES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhc-CCccCcEEEEcCchh---ccCCcCEEEEcch
Confidence 5679999999999999999987 567999999999999999998765 333689999999543 3578999999999
Q ss_pred hhhCCChhhhhhh
Q 048398 265 VCLLSNSEHLSVE 277 (280)
Q Consensus 265 lh~l~d~~~~~~l 277 (280)
+||++++....++
T Consensus 137 l~~~~~~~~~~~l 149 (230)
T PRK07580 137 LIHYPQEDAARML 149 (230)
T ss_pred hhcCCHHHHHHHH
Confidence 9999877654443
No 35
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=5.1e-13 Score=114.81 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=75.5
Q ss_pred CcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechhhh
Q 048398 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYVVC 266 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vlh 266 (280)
++|||||||+|.++..+++.+|+++++|+|+|+.+++.|++++... +...+++++.+|+...+++ ++||+|++..++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-GLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-CCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 4799999999999999999988899999999999999999998876 4667899999999776665 5799999999999
Q ss_pred hCCChhh
Q 048398 267 LLSNSEH 273 (280)
Q Consensus 267 ~l~d~~~ 273 (280)
|+++...
T Consensus 79 ~~~~~~~ 85 (224)
T smart00828 79 HIKDKMD 85 (224)
T ss_pred hCCCHHH
Confidence 9988644
No 36
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.44 E-value=2.4e-14 Score=107.35 Aligned_cols=82 Identities=32% Similarity=0.425 Sum_probs=53.6
Q ss_pred EEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCceeeEEechhhhh
Q 048398 190 LDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKSFDVVSLSYVVCL 267 (280)
Q Consensus 190 LDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~sfDlVi~~~vlh~ 267 (280)
||||||+|.++..+.+.+|..+++|+|+|+.|++.|++++... ...+...+..+..+.. .+.++||+|++.+++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL--GNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC--T---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc--CCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 7999999999999999999999999999999999999988776 3334444444444332 12358999999999999
Q ss_pred CCChhh
Q 048398 268 LSNSEH 273 (280)
Q Consensus 268 l~d~~~ 273 (280)
+++...
T Consensus 79 l~~~~~ 84 (99)
T PF08242_consen 79 LEDIEA 84 (99)
T ss_dssp -S-HHH
T ss_pred hhhHHH
Confidence 966554
No 37
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.43 E-value=1.2e-12 Score=118.07 Aligned_cols=91 Identities=13% Similarity=0.199 Sum_probs=79.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..+|||||||+|.+++.+++.+|+.+++++|+ |.+++.+++++... +..++++++.+|+.+.+++. +|+|++.++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-GVADRMRGIAVDIYKESYPE--ADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC-CccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence 668999999999999999999999999999998 89999999999877 56678999999998766653 699999999
Q ss_pred hhhCCChhhhhhhhc
Q 048398 265 VCLLSNSEHLSVERC 279 (280)
Q Consensus 265 lh~l~d~~~~~~l~~ 279 (280)
+|++++.....++++
T Consensus 225 lh~~~~~~~~~il~~ 239 (306)
T TIGR02716 225 LYSANEQLSTIMCKK 239 (306)
T ss_pred hhcCChHHHHHHHHH
Confidence 999988776666553
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=6.6e-13 Score=118.64 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=74.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++..+ +. ++++...|+...++ +++||+|+++.+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-~l--~v~~~~~D~~~~~~-~~~fD~I~~~~v 193 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-NL--NIRTGLYDINSASI-QEEYDFILSTVV 193 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-CC--ceEEEEechhcccc-cCCccEEEEcch
Confidence 5679999999999999999987 689999999999999999998876 23 78999999887655 568999999999
Q ss_pred hhhCCChhhhhhhh
Q 048398 265 VCLLSNSEHLSVER 278 (280)
Q Consensus 265 lh~l~d~~~~~~l~ 278 (280)
+||+++.....+++
T Consensus 194 l~~l~~~~~~~~l~ 207 (287)
T PRK12335 194 LMFLNRERIPAIIK 207 (287)
T ss_pred hhhCCHHHHHHHHH
Confidence 99998655544443
No 39
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.43 E-value=1.1e-12 Score=118.97 Aligned_cols=84 Identities=23% Similarity=0.237 Sum_probs=75.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
...+|||||||+|.++..+++..++.+++++|+|+.|++.|+++... .+++++++|++++++++++||+|+++.+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs~~~ 187 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVSAGS 187 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEEcCh
Confidence 56799999999999999999888778999999999999999987542 3688999999999888889999999999
Q ss_pred hhhCCChhh
Q 048398 265 VCLLSNSEH 273 (280)
Q Consensus 265 lh~l~d~~~ 273 (280)
+||++++++
T Consensus 188 L~~~~d~~~ 196 (340)
T PLN02490 188 IEYWPDPQR 196 (340)
T ss_pred hhhCCCHHH
Confidence 999999765
No 40
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=4.8e-12 Score=107.61 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=72.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
+..+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++... +...+++++++|+.+...+.++||+|++..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL-GYWGVVEVYHGDGKRGLEKHAPFDAIIVTA 150 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence 567999999999999999988763 569999999999999999999877 344579999999987544457899999999
Q ss_pred hhhhCCC
Q 048398 264 VVCLLSN 270 (280)
Q Consensus 264 vlh~l~d 270 (280)
+++++++
T Consensus 151 ~~~~~~~ 157 (205)
T PRK13944 151 AASTIPS 157 (205)
T ss_pred CcchhhH
Confidence 9999875
No 41
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.42 E-value=1.2e-12 Score=109.21 Aligned_cols=82 Identities=23% Similarity=0.233 Sum_probs=70.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||+|||+|.++..++..+|..+|+|+|+|+.+++.++++.++. ...+++++++|++++. ..++||+|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~--~~~~i~~i~~d~~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL--GLNNVEIVNGRAEDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh--CCCCeEEEecchhhcc-ccCCccEEEehh-
Confidence 578999999999999999998888899999999999999999998877 3457999999998874 356899999987
Q ss_pred hhhCCC
Q 048398 265 VCLLSN 270 (280)
Q Consensus 265 lh~l~d 270 (280)
++++++
T Consensus 118 ~~~~~~ 123 (181)
T TIGR00138 118 LASLNV 123 (181)
T ss_pred hhCHHH
Confidence 666554
No 42
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.42 E-value=1e-12 Score=118.33 Aligned_cols=84 Identities=23% Similarity=0.200 Sum_probs=70.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCCeEEEEeCCCCCCCCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG---PRKNPISWVHAIGEDSGLPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~---~~~~~v~~~~~d~~~~~~~~~sfDlVi~ 261 (280)
++.+|||||||+|.+++.+++. +.+|+|+|+|+.|++.|+++..... ....+++|..+|++.. +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 5679999999999999999987 7899999999999999999976530 0134688999998764 468999999
Q ss_pred chhhhhCCChhh
Q 048398 262 SYVVCLLSNSEH 273 (280)
Q Consensus 262 ~~vlh~l~d~~~ 273 (280)
..+++|+++...
T Consensus 219 ~~vL~H~p~~~~ 230 (315)
T PLN02585 219 LDVLIHYPQDKA 230 (315)
T ss_pred cCEEEecCHHHH
Confidence 999999988654
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.42 E-value=1.7e-12 Score=108.65 Aligned_cols=76 Identities=26% Similarity=0.235 Sum_probs=68.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
++.+|||+|||+|..++.+++..|+++|+|+|+++.+++.|+++.+.+ ...+++++++|+.+.+. .++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~--~l~~i~~~~~d~~~~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL--GLKNVTVVHGRAEEFGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc--CCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence 578999999999999999999888999999999999999999999887 34569999999998766 67899999975
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.41 E-value=1.5e-12 Score=115.30 Aligned_cols=87 Identities=25% Similarity=0.357 Sum_probs=76.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
++.+|||+|||+|..++.+++.. +..+|+|+|+++.+++.|+++.... ...+++|+++|++++++++++||+|+++.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--GYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--CCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 67899999999999888777654 5568999999999999999998776 34689999999999888888999999999
Q ss_pred hhhhCCChhh
Q 048398 264 VVCLLSNSEH 273 (280)
Q Consensus 264 vlh~l~d~~~ 273 (280)
++|++++..+
T Consensus 155 v~~~~~d~~~ 164 (272)
T PRK11873 155 VINLSPDKER 164 (272)
T ss_pred cccCCCCHHH
Confidence 9999988655
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=1.1e-12 Score=125.11 Aligned_cols=86 Identities=26% Similarity=0.425 Sum_probs=76.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||+|..+..+++.+ +++|+|+|+|+.+++.|+++... ...+++|+++|+...++++++||+|++..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~---~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG---RKCSVEFEVADCTKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc---CCCceEEEEcCcccCCCCCCCEEEEEECCc
Confidence 56799999999999999999876 78999999999999999988753 345899999999998888889999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
++|++++.++
T Consensus 342 l~h~~d~~~~ 351 (475)
T PLN02336 342 ILHIQDKPAL 351 (475)
T ss_pred ccccCCHHHH
Confidence 9999987764
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.41 E-value=1.9e-12 Score=108.13 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=70.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.++||+|||.|..+..|++. |..|+++|+|+.+++.+++.+... .-.|+..+.|+++..++ +.||+|++..|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~---~l~i~~~~~Dl~~~~~~-~~yD~I~st~v 103 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEE---GLDIRTRVADLNDFDFP-EEYDFIVSTVV 103 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHT---T-TEEEEE-BGCCBS-T-TTEEEEEEESS
T ss_pred CCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhc---CceeEEEEecchhcccc-CCcCEEEEEEE
Confidence 6889999999999999999999 899999999999999998887766 23499999999988775 57999999999
Q ss_pred hhhCCChhhhhhhh
Q 048398 265 VCLLSNSEHLSVER 278 (280)
Q Consensus 265 lh~l~d~~~~~~l~ 278 (280)
++|++.+..-.++.
T Consensus 104 ~~fL~~~~~~~i~~ 117 (192)
T PF03848_consen 104 FMFLQRELRPQIIE 117 (192)
T ss_dssp GGGS-GGGHHHHHH
T ss_pred eccCCHHHHHHHHH
Confidence 99999876644443
No 47
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=3.1e-12 Score=110.25 Aligned_cols=87 Identities=26% Similarity=0.423 Sum_probs=76.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
++.+|||+|||+|.++..+++.+ |..+++|+|+++.+++.++++... ...++++..+|+...++++++||+|++..
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---LGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC---CCCceEEEecccccCCCCCCCceEEEEec
Confidence 67899999999999999999987 778999999999999999988432 35689999999998888888999999999
Q ss_pred hhhhCCChhhh
Q 048398 264 VVCLLSNSEHL 274 (280)
Q Consensus 264 vlh~l~d~~~~ 274 (280)
+++|++++..+
T Consensus 96 ~~~~~~~~~~~ 106 (241)
T PRK08317 96 VLQHLEDPARA 106 (241)
T ss_pred hhhccCCHHHH
Confidence 99999987653
No 48
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=1.3e-12 Score=118.43 Aligned_cols=87 Identities=22% Similarity=0.148 Sum_probs=71.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++++|||||||+|.++..+++.++ ..|+|+|+|+.++..++...... +...+++++.++++++++ +++||+|+|..+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~-~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL-GNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc-CCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 678999999999999999999864 36999999999987665443322 123579999999999887 678999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
+||+.++...
T Consensus 199 l~H~~dp~~~ 208 (322)
T PRK15068 199 LYHRRSPLDH 208 (322)
T ss_pred hhccCCHHHH
Confidence 9999987653
No 49
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.40 E-value=3.3e-12 Score=105.96 Aligned_cols=82 Identities=32% Similarity=0.522 Sum_probs=65.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
...++||+|||.|.++..|+.+ ..+++++|+|+.+++.|++++... .+|+|+++++-.. .|.++||+|+++.|
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred ccceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence 5678999999999999999998 569999999999999999998643 6899999999876 57789999999999
Q ss_pred hhhCCChhh
Q 048398 265 VCLLSNSEH 273 (280)
Q Consensus 265 lh~l~d~~~ 273 (280)
++++.+.+.
T Consensus 116 lYYL~~~~~ 124 (201)
T PF05401_consen 116 LYYLDDAED 124 (201)
T ss_dssp GGGSSSHHH
T ss_pred hHcCCCHHH
Confidence 999987543
No 50
>PLN03075 nicotianamine synthase; Provisional
Probab=99.40 E-value=3.2e-12 Score=113.33 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=73.7
Q ss_pred CCCcEEEECCCCChh--HHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVS--TKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~--a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
++++|+|||||.|-+ ...++..+|+.+++|+|+++.+++.|++.+....+..++++|..+|+.+.....+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999997733 333445679999999999999999999999642256778999999998863334679999999
Q ss_pred hhhhhCCChhhhhhhh
Q 048398 263 YVVCLLSNSEHLSVER 278 (280)
Q Consensus 263 ~vlh~l~d~~~~~~l~ 278 (280)
++|+++.+.+..+++
T Consensus 203 -ALi~~dk~~k~~vL~ 217 (296)
T PLN03075 203 -ALVGMDKEEKVKVIE 217 (296)
T ss_pred -cccccccccHHHHHH
Confidence 999997665555544
No 51
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.40 E-value=2.2e-12 Score=112.30 Aligned_cols=107 Identities=20% Similarity=0.243 Sum_probs=82.7
Q ss_pred hhHHhHHHHHHHH-HHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC
Q 048398 160 VDKANDVMRGNWL-QAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNP 238 (280)
Q Consensus 160 ~~~~~~~l~~~~~-~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~ 238 (280)
|..++........ ..+.... .+. +.++|+|||+|+|.++..+++.+|+.+++.+|+ |.+++.+++ . ++
T Consensus 76 f~~~m~~~~~~~~~~~~~~~~-d~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~-----~r 144 (241)
T PF00891_consen 76 FNAAMAEYSRLNAFDILLEAF-DFS-GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A-----DR 144 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-TTT-TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T-----TT
T ss_pred HHHHHHhhhhcchhhhhhccc-ccc-CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c-----cc
Confidence 4444444444443 3333332 333 677999999999999999999999999999999 999999888 2 48
Q ss_pred eEEEEeCCCCCCCCCCceeeEEechhhhhCCChhhhhhhhcC
Q 048398 239 ISWVHAIGEDSGLPSKSFDVVSLSYVVCLLSNSEHLSVERCL 280 (280)
Q Consensus 239 v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d~~~~~~l~~l 280 (280)
|+++.+|+. .++|. +|+|+++++||+++|++.+.+|+++
T Consensus 145 v~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~~ 183 (241)
T PF00891_consen 145 VEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRNA 183 (241)
T ss_dssp EEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHHH
T ss_pred cccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHHH
Confidence 999999999 56776 9999999999999999999998864
No 52
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.39 E-value=1.9e-12 Score=114.62 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=68.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||.|.+++.+++.+ +++|+|+.+|+.+.+.+++++... +..+++++..+|..+++. +||.|++..+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~-gl~~~v~v~~~D~~~~~~---~fD~IvSi~~ 136 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA-GLEDRVEVRLQDYRDLPG---KFDRIVSIEM 136 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS-TSSSTEEEEES-GGG------S-SEEEEESE
T ss_pred CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEEeeccccCC---CCCEEEEEec
Confidence 78899999999999999999998 899999999999999999999988 677899999999987633 8999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
++|+......
T Consensus 137 ~Ehvg~~~~~ 146 (273)
T PF02353_consen 137 FEHVGRKNYP 146 (273)
T ss_dssp GGGTCGGGHH
T ss_pred hhhcChhHHH
Confidence 9999765443
No 53
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.38 E-value=5.6e-12 Score=104.07 Aligned_cols=82 Identities=27% Similarity=0.383 Sum_probs=68.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
...+|||+|||+|.+++.+++.+|..+|+++|+++.+++.+++++..+ +. .+++++++|+.+. +++++||+|+++--
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n-~~-~~v~~~~~d~~~~-~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN-GL-ENVEVVQSDLFEA-LPDGKFDLIVSNPP 107 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT-TC-TTEEEEESSTTTT-CCTTCEEEEEE---
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-Cc-ccccccccccccc-ccccceeEEEEccc
Confidence 577999999999999999999999889999999999999999999998 33 3499999998775 55688999999976
Q ss_pred hhhCC
Q 048398 265 VCLLS 269 (280)
Q Consensus 265 lh~l~ 269 (280)
++.-.
T Consensus 108 ~~~~~ 112 (170)
T PF05175_consen 108 FHAGG 112 (170)
T ss_dssp SBTTS
T ss_pred hhccc
Confidence 55443
No 54
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=4.7e-12 Score=111.16 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=76.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||.|.+++.+++.+ +++|+|+++|+++.+.+++++... +...+++++..|..++. +.||-|++..+
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~-gl~~~v~v~l~d~rd~~---e~fDrIvSvgm 146 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR-GLEDNVEVRLQDYRDFE---EPFDRIVSVGM 146 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc-CCCcccEEEeccccccc---cccceeeehhh
Confidence 78999999999999999999999 899999999999999999999888 56679999999998863 34999999999
Q ss_pred hhhCCChhh
Q 048398 265 VCLLSNSEH 273 (280)
Q Consensus 265 lh~l~d~~~ 273 (280)
++|+-...-
T Consensus 147 fEhvg~~~~ 155 (283)
T COG2230 147 FEHVGKENY 155 (283)
T ss_pred HHHhCcccH
Confidence 999987443
No 55
>PRK06922 hypothetical protein; Provisional
Probab=99.36 E-value=2.5e-12 Score=123.90 Aligned_cols=82 Identities=16% Similarity=0.254 Sum_probs=73.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~sfDlVi~~ 262 (280)
++.+|||+|||+|..+..+++.+|+.+++|+|+|+.|++.|+++.... ..+++++++|+.+++ +++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~---g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE---GRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc---CCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 678999999999999999999899999999999999999999887544 347889999998877 778899999999
Q ss_pred hhhhhCC
Q 048398 263 YVVCLLS 269 (280)
Q Consensus 263 ~vlh~l~ 269 (280)
.++|++.
T Consensus 495 ~vLH~L~ 501 (677)
T PRK06922 495 SILHELF 501 (677)
T ss_pred hHHHhhh
Confidence 9999863
No 56
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.36 E-value=7.9e-12 Score=110.83 Aligned_cols=73 Identities=27% Similarity=0.452 Sum_probs=63.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC---CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS---AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~---~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~ 261 (280)
...+|||+|||+|.++..+++.+|. .+++|+|+|+.+++.|+++. .++.|.++|+.++|+++++||+|++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQSLDAIIR 157 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCCceeEEEE
Confidence 4578999999999999999987753 47999999999999997652 3688999999999998999999998
Q ss_pred chh
Q 048398 262 SYV 264 (280)
Q Consensus 262 ~~v 264 (280)
.+.
T Consensus 158 ~~~ 160 (272)
T PRK11088 158 IYA 160 (272)
T ss_pred ecC
Confidence 765
No 57
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.35 E-value=9.5e-12 Score=107.40 Aligned_cols=89 Identities=25% Similarity=0.376 Sum_probs=77.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
+..+|||+|||+|.++..+++.+| ..+++|+|+++.+++.+++++... +...++.++.+|+.+.+++.++||+|++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-GLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-ccccCeEEEecccccCCCCCCCccEEEEec
Confidence 467999999999999999999886 689999999999999999998654 234679999999998877778899999999
Q ss_pred hhhhCCChhhh
Q 048398 264 VVCLLSNSEHL 274 (280)
Q Consensus 264 vlh~l~d~~~~ 274 (280)
++|++++...+
T Consensus 130 ~l~~~~~~~~~ 140 (239)
T PRK00216 130 GLRNVPDIDKA 140 (239)
T ss_pred ccccCCCHHHH
Confidence 99999886653
No 58
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.34 E-value=7.7e-12 Score=103.65 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=73.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeE-EEEeCCCCCC-CCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPIS-WVHAIGEDSG-LPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~sfDlVi~~ 262 (280)
....||+||||||..-...- .-|..+|+++|.++.|-+.+.+.+.++ ...++. |+++++++++ ++++++|.|++.
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~--k~~~~~~fvva~ge~l~~l~d~s~DtVV~T 152 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEK--KPLQVERFVVADGENLPQLADGSYDTVVCT 152 (252)
T ss_pred CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhc--cCcceEEEEeechhcCcccccCCeeeEEEE
Confidence 44568999999998743322 226899999999999999999999887 556676 9999999998 789999999999
Q ss_pred hhhhhCCChhhh
Q 048398 263 YVVCLLSNSEHL 274 (280)
Q Consensus 263 ~vlh~l~d~~~~ 274 (280)
++|+...++.+.
T Consensus 153 lvLCSve~~~k~ 164 (252)
T KOG4300|consen 153 LVLCSVEDPVKQ 164 (252)
T ss_pred EEEeccCCHHHH
Confidence 999999988774
No 59
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.34 E-value=6e-12 Score=106.03 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=66.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC-C-CCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGED-S-GLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~sfDlVi~~ 262 (280)
+..+|||+|||+|.++..+++.. +.+++|+|+++.+++.++.+ +++++++|+.+ + ++++++||+|+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 56799999999999999887664 66899999999999887532 46889999876 3 3667889999999
Q ss_pred hhhhhCCChhhh
Q 048398 263 YVVCLLSNSEHL 274 (280)
Q Consensus 263 ~vlh~l~d~~~~ 274 (280)
.++||++++...
T Consensus 83 ~~l~~~~d~~~~ 94 (194)
T TIGR02081 83 QTLQATRNPEEI 94 (194)
T ss_pred hHhHcCcCHHHH
Confidence 999999987663
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.34 E-value=2.3e-12 Score=109.31 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=70.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCC-CCCC--CCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIG-EDSG--LPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~sfDlVi~ 261 (280)
+..+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|++++..+ ...++.++++|+ +.++ +++++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~--~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE--GLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc--CCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 567899999999999999999988899999999999999999998876 346899999999 6665 66788999999
Q ss_pred chhhh
Q 048398 262 SYVVC 266 (280)
Q Consensus 262 ~~vlh 266 (280)
++...
T Consensus 118 ~~~~p 122 (202)
T PRK00121 118 NFPDP 122 (202)
T ss_pred ECCCC
Confidence 87553
No 61
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.34 E-value=2e-11 Score=104.57 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.|++++... ..++++++++|+.+.....++||+|++..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--GLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC--CCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 678999999999999999998863 467999999999999999999887 34789999999987544456899999998
Q ss_pred hhhhCCC
Q 048398 264 VVCLLSN 270 (280)
Q Consensus 264 vlh~l~d 270 (280)
...++++
T Consensus 155 ~~~~~~~ 161 (215)
T TIGR00080 155 AGPKIPE 161 (215)
T ss_pred CcccccH
Confidence 8887764
No 62
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.33 E-value=4.4e-12 Score=104.92 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=70.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC--CCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS--GLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~sfDlVi~~ 262 (280)
++.+|||+|||.|.+...|.+.. +++++|+|+++..+..|.++ .+.++++|+++- .+++++||.||++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r---------Gv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR---------GVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc---------CCCEEECCHHHhHhhCCCCCccEEehH
Confidence 67899999999999999998863 89999999999988877655 467899999762 3789999999999
Q ss_pred hhhhhCCChhhhh
Q 048398 263 YVVCLLSNSEHLS 275 (280)
Q Consensus 263 ~vlh~l~d~~~~~ 275 (280)
.+|+++..++.+.
T Consensus 83 qtLQ~~~~P~~vL 95 (193)
T PF07021_consen 83 QTLQAVRRPDEVL 95 (193)
T ss_pred hHHHhHhHHHHHH
Confidence 9999999988854
No 63
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.32 E-value=4.4e-12 Score=102.65 Aligned_cols=75 Identities=29% Similarity=0.522 Sum_probs=61.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..+|||||||+|.++..+++. +.+++|+|+++.+++. . ++.....+....+.++++||+|+|+.+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~------~------~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK------R------NVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH------T------TSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh------h------hhhhhhhhhhhhhccccchhhHhhHHH
Confidence 7889999999999999999877 5599999999999987 1 234555544455466789999999999
Q ss_pred hhhCCChhh
Q 048398 265 VCLLSNSEH 273 (280)
Q Consensus 265 lh~l~d~~~ 273 (280)
|||++++..
T Consensus 88 l~~~~d~~~ 96 (161)
T PF13489_consen 88 LEHLPDPEE 96 (161)
T ss_dssp GGGSSHHHH
T ss_pred HhhcccHHH
Confidence 999998665
No 64
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.32 E-value=1.9e-11 Score=110.09 Aligned_cols=86 Identities=20% Similarity=0.120 Sum_probs=68.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++++|||||||+|.++..++..++ ..|+|+|+|+.|+..++...... ....++.+..+++++++.. .+||+|+|+.+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~-~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL-DNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh-ccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 678999999999999999988753 47999999999998754432221 1235788999999888654 47999999999
Q ss_pred hhhCCChhh
Q 048398 265 VCLLSNSEH 273 (280)
Q Consensus 265 lh~l~d~~~ 273 (280)
++|++++..
T Consensus 198 L~H~~dp~~ 206 (314)
T TIGR00452 198 LYHRKSPLE 206 (314)
T ss_pred hhccCCHHH
Confidence 999998855
No 65
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.31 E-value=2.8e-11 Score=103.41 Aligned_cols=85 Identities=28% Similarity=0.424 Sum_probs=75.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS-AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~-~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
++.+|||+|||+|.++..+++.+|. .+++|+|+++.+++.++++.. . ..+++++++|+.+.+++.++||+|++++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~---~~~i~~~~~d~~~~~~~~~~~D~i~~~~ 114 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L---PLNIEFIQADAEALPFEDNSFDAVTIAF 114 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c---CCCceEEecchhcCCCCCCcEEEEEEee
Confidence 5789999999999999999999876 799999999999999998865 2 3578999999999887777899999999
Q ss_pred hhhhCCChhh
Q 048398 264 VVCLLSNSEH 273 (280)
Q Consensus 264 vlh~l~d~~~ 273 (280)
++|++++...
T Consensus 115 ~~~~~~~~~~ 124 (223)
T TIGR01934 115 GLRNVTDIQK 124 (223)
T ss_pred eeCCcccHHH
Confidence 9999988654
No 66
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.30 E-value=1.7e-11 Score=107.60 Aligned_cols=168 Identities=13% Similarity=0.154 Sum_probs=119.2
Q ss_pred HHHHhHHHHHHHhhhhCCCC-cHHhHHHhhhhhhhhhhhhhccCCCCCccccCCCCCcCCCCcccccchhhhhhhHHHHH
Q 048398 72 VLKFGARQVLISTAEKNDIP-WRAMTKEILESDVYKEMESIQNRSIVYPAYYLNPFHAYDDGNLSWLAAAEAEAADLSMT 150 (280)
Q Consensus 72 ~~~~~ar~~l~~~~~~~gi~-w~~~~~~l~~~~w~~~~~~v~~~~~~~~~~~~~~fh~~~~g~~~w~~a~e~e~a~~~~~ 150 (280)
.-+...+..|.++.++.|+. ++++...|... ..+.+.+.+.......++.+.-|.+.
T Consensus 22 ~k~~~v~~Rl~~~~~~~~~~~~~~y~~~l~~~--~~e~~~~l~~ltin~T~FFR~~~~f~-------------------- 79 (268)
T COG1352 22 YKRTLVYRRLSRRLRKLGLKNFEEYLNLLESD--SEELQAFLDALTINVTEFFRDPEHFE-------------------- 79 (268)
T ss_pred hhHHHHHHHHHHHHHHhCcccHHHHHHHHhCC--HHHHHHHHHHhhhccchhccCcHHHH--------------------
Confidence 34455566788888999999 99999999876 56677766666665555555333221
Q ss_pred HhcCCCCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCCh----hHHHHHhhCC-----CCeEEEEeCCHHH
Q 048398 151 RRAIPYASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGV----STKCLADKFP-----SAKVTGLDLSPYF 221 (280)
Q Consensus 151 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~----~a~~l~~~~p-----~~~v~gvDisp~~ 221 (280)
.+.....+.+...... ++-+||.+||+||. +++.+.+.+| ..+|+|+|||..+
T Consensus 80 ---------------~l~~~v~p~l~~~~~~---~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~ 141 (268)
T COG1352 80 ---------------ELRDEVLPELVKRKKG---RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSV 141 (268)
T ss_pred ---------------HHHHHHHHHHHhhccC---CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHH
Confidence 3334334333322211 47899999999995 7777788775 4799999999999
Q ss_pred HHHHHHHH-------------------HhcC--------CCCCCeEEEEeCCCCCCCCCCceeeEEechhhhhCCChhhh
Q 048398 222 LAVAQLKE-------------------KKGG--------PRKNPISWVHAIGEDSGLPSKSFDVVSLSYVVCLLSNSEHL 274 (280)
Q Consensus 222 l~~A~~~~-------------------~~~~--------~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d~~~~ 274 (280)
++.|+.-. .+.+ .....|.|...|+...+...+.||+|+|.+||.+++.+.+.
T Consensus 142 L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~ 221 (268)
T COG1352 142 LEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQE 221 (268)
T ss_pred HHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHH
Confidence 99997611 0110 13457899999998776335679999999999999999998
Q ss_pred hhhhc
Q 048398 275 SVERC 279 (280)
Q Consensus 275 ~~l~~ 279 (280)
.++++
T Consensus 222 ~il~~ 226 (268)
T COG1352 222 RILRR 226 (268)
T ss_pred HHHHH
Confidence 88765
No 67
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.29 E-value=4.3e-11 Score=103.48 Aligned_cols=119 Identities=22% Similarity=0.267 Sum_probs=86.4
Q ss_pred HHHHhcCCCCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 048398 148 SMTRRAIPYASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~ 227 (280)
+++.++|+.... ...++.+....++.+....... +..+|||||||+|.++..+.+. +++++++|+++.+++.+++
T Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~ 88 (233)
T PRK05134 14 ALAARWWDPNGE-FKPLHRINPLRLNYIREHAGGL--FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARL 88 (233)
T ss_pred HHHHHHhccCCC-cHHHHHhhHHHHHHHHHhccCC--CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence 345556764433 3333444444344444443222 6789999999999999999886 6789999999999999999
Q ss_pred HHHhcCCCCCCeEEEEeCCCCCC-CCCCceeeEEechhhhhCCChhhh
Q 048398 228 KEKKGGPRKNPISWVHAIGEDSG-LPSKSFDVVSLSYVVCLLSNSEHL 274 (280)
Q Consensus 228 ~~~~~~~~~~~v~~~~~d~~~~~-~~~~sfDlVi~~~vlh~l~d~~~~ 274 (280)
++... ..++++..+++.+.+ ...++||+|++.++++|+++...+
T Consensus 89 ~~~~~---~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~ 133 (233)
T PRK05134 89 HALES---GLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASF 133 (233)
T ss_pred HHHHc---CCceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHH
Confidence 88765 236788888887764 245789999999999999987653
No 68
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.29 E-value=1.7e-11 Score=104.83 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=71.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC----------CCCCCeEEEEeCCCCCCCC-C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG----------PRKNPISWVHAIGEDSGLP-S 253 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~----------~~~~~v~~~~~d~~~~~~~-~ 253 (280)
+..+|||+|||.|..+..+++. +.+|+|+|+|+.+++.+........ ....+|+++++|+.+++.. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 5679999999999999999998 8999999999999998644221100 0134799999999987642 4
Q ss_pred CceeeEEechhhhhCCChhhhhhh
Q 048398 254 KSFDVVSLSYVVCLLSNSEHLSVE 277 (280)
Q Consensus 254 ~sfDlVi~~~vlh~l~d~~~~~~l 277 (280)
++||+|+-..+++|++...+...+
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~ 135 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYA 135 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHH
Confidence 579999999999999988765443
No 69
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=3.3e-11 Score=103.01 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
++.+|||||||+|.++..+++.. +..+|+++|+++.+++.|++++... ...+++++++|+.....+.++||+|++..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~--g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL--GYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 67899999999999999998875 4479999999999999999999876 34689999999987655667899999998
Q ss_pred hhhhCCC
Q 048398 264 VVCLLSN 270 (280)
Q Consensus 264 vlh~l~d 270 (280)
.+++++.
T Consensus 154 ~~~~~~~ 160 (212)
T PRK13942 154 AGPDIPK 160 (212)
T ss_pred CcccchH
Confidence 8887764
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.28 E-value=1.5e-11 Score=109.70 Aligned_cols=76 Identities=25% Similarity=0.424 Sum_probs=67.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
++.+|||+|||+|.++..+++.+|+++|+|+|+|+.+++.|++|+..+ +...+++++++|+.+. +++++||+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~-~~~~~i~~~~~D~~~~-~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH-GLEDRVTLIQSDLFAA-LPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEECchhhc-cCCCCccEEEEC
Confidence 457899999999999999999999999999999999999999999887 4556899999998653 455689999997
No 71
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.28 E-value=2.3e-11 Score=112.00 Aligned_cols=81 Identities=26% Similarity=0.308 Sum_probs=68.5
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGP-RKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
..+|||+|||+|.+++.+++.+|.++|+++|+|+.+++.|++|++.++. ...+++++.+|+... ++.++||+|+|+--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 4699999999999999999999999999999999999999999987721 124789999998654 45568999999866
Q ss_pred hhh
Q 048398 265 VCL 267 (280)
Q Consensus 265 lh~ 267 (280)
+|.
T Consensus 308 fh~ 310 (378)
T PRK15001 308 FHQ 310 (378)
T ss_pred ccc
Confidence 654
No 72
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.27 E-value=1.3e-11 Score=117.66 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=70.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCC--CCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGE--DSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~sfDlVi~~ 262 (280)
+..+|||||||+|.++..+++. ..+|+|+|+++.+++.++.... ...+++++++|+. .+++++++||+|+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~----~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESING----HYKNVKFMCADVTSPDLNISDGSVDLIFSN 110 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhc----cCCceEEEEecccccccCCCCCCEEEEehh
Confidence 4569999999999999999988 5699999999999988765321 3468999999996 456778899999999
Q ss_pred hhhhhCCChhhhh
Q 048398 263 YVVCLLSNSEHLS 275 (280)
Q Consensus 263 ~vlh~l~d~~~~~ 275 (280)
.++||+++.+...
T Consensus 111 ~~l~~l~~~~~~~ 123 (475)
T PLN02336 111 WLLMYLSDKEVEN 123 (475)
T ss_pred hhHHhCCHHHHHH
Confidence 9999999865433
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.27 E-value=5.7e-11 Score=91.96 Aligned_cols=81 Identities=19% Similarity=0.113 Sum_probs=67.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-CCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-GLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~sfDlVi~~~ 263 (280)
+..+|||+|||+|.++..+++.+|..+|+|+|+++.+++.+++++... ...+++++.+|+... +...++||+|++..
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF--GVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh--CCCceEEEeccccccChhhcCCCCEEEECC
Confidence 457999999999999999999988899999999999999999998876 345789999987753 22235899999987
Q ss_pred hhhh
Q 048398 264 VVCL 267 (280)
Q Consensus 264 vlh~ 267 (280)
..++
T Consensus 97 ~~~~ 100 (124)
T TIGR02469 97 SGGL 100 (124)
T ss_pred cchh
Confidence 6544
No 74
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.25 E-value=1.3e-11 Score=95.01 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=67.9
Q ss_pred CcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCceeeEEechh
Q 048398 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKSFDVVSLSYV 264 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~sfDlVi~~~v 264 (280)
.+|||+|||+|.++..+++.+ ..+++|+|++|..++.|+.++... +...+++++++|+.+.. +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN-GLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC-TTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc-cCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999999997 689999999999999999999887 55678999999998765 67889999999876
Q ss_pred hhh
Q 048398 265 VCL 267 (280)
Q Consensus 265 lh~ 267 (280)
+..
T Consensus 80 ~~~ 82 (117)
T PF13659_consen 80 YGP 82 (117)
T ss_dssp TTS
T ss_pred Ccc
Confidence 654
No 75
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.25 E-value=1.5e-10 Score=99.38 Aligned_cols=122 Identities=25% Similarity=0.255 Sum_probs=86.7
Q ss_pred HHHHhcCCCCcchhHHhHHHHHHHHHHHHHHhhhh--cCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHH
Q 048398 148 SMTRRAIPYASSVDKANDVMRGNWLQAIEKHHQQY--AGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVA 225 (280)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A 225 (280)
.++..+++....|..... +.....+.+.+.+... ..++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a 83 (224)
T TIGR01983 7 ALAHEWWDPNGKFKPLHK-MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVA 83 (224)
T ss_pred HHHHHhcCCCCcHHHHHH-hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHH
Confidence 455556665555544322 2222223333333211 115789999999999999999886 56799999999999999
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCCCCCC-CCceeeEEechhhhhCCChhhh
Q 048398 226 QLKEKKGGPRKNPISWVHAIGEDSGLP-SKSFDVVSLSYVVCLLSNSEHL 274 (280)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~sfDlVi~~~vlh~l~d~~~~ 274 (280)
+.++... ...++++..+|+.+.+.+ .++||+|++..+++|+.++..+
T Consensus 84 ~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~ 131 (224)
T TIGR01983 84 KLHAKKD--PLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAF 131 (224)
T ss_pred HHHHHHc--CCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHH
Confidence 9998765 223689999998877543 3789999999999999987653
No 76
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.25 E-value=2.3e-11 Score=109.59 Aligned_cols=74 Identities=26% Similarity=0.407 Sum_probs=66.1
Q ss_pred CcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
.+|||+|||+|.++..+++.+|.++|+|+|+|+.+++.|++|+..+ +...+++++++|+.+. ++.++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~-~l~~~i~~~~~D~~~~-l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH-GLEDRVTLIESDLFAA-LPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEECchhhh-CCCCCccEEEEC
Confidence 6899999999999999999999999999999999999999999887 4456799999998653 455689999997
No 77
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.25 E-value=7.5e-11 Score=104.72 Aligned_cols=180 Identities=12% Similarity=0.085 Sum_probs=119.3
Q ss_pred HHHHHHHHhhhcch--HHHHHHhHHHHHHHhhhhCCCC-cHHhHHHhhhhhhhhhhhhhccCCCCCccccCCCCCcCCCC
Q 048398 56 LSRLVGALISFKPI--SAVLKFGARQVLISTAEKNDIP-WRAMTKEILESDVYKEMESIQNRSIVYPAYYLNPFHAYDDG 132 (280)
Q Consensus 56 ~~~~~~~~~~~~p~--~~~~~~~ar~~l~~~~~~~gi~-w~~~~~~l~~~~w~~~~~~v~~~~~~~~~~~~~~fh~~~~g 132 (280)
+.++...+.....+ ...-+......+.++.+..|++ ..++++.|....-..+++.+.+.......|+.|.-+.+.
T Consensus 27 f~~i~~~i~~~~Gi~~~~~k~~~l~~rl~~r~~~~g~~s~~~y~~~L~~~~~~~e~~~li~~ltineT~FFRd~~~f~-- 104 (287)
T PRK10611 27 FRRICQLIYQRAGIVLADHKREMVYNRLVRRLRSLGLNDFGQYLALLESNQNSAEWQAFINALTTNLTAFFREAHHFP-- 104 (287)
T ss_pred HHHHHHHHHHHHCCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHhhCCCCCccCCcHHHH--
Confidence 55555544444432 2233444566788888899988 778888887542234566666766777777766433321
Q ss_pred cccccchhhhhhhHHHHHHhcCCCCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCCh----hHHHHHhhCC
Q 048398 133 NLSWLAAAEAEAADLSMTRRAIPYASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGV----STKCLADKFP 208 (280)
Q Consensus 133 ~~~w~~a~e~e~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~----~a~~l~~~~p 208 (280)
.+... +. ... +..+||..||+||. +++.+.+.++
T Consensus 105 ---------------------------------~L~~~----~~----~~~-~~irIWSAgCStGEEpYSlAmll~e~~~ 142 (287)
T PRK10611 105 ---------------------------------ILAEH----AR----RRS-GEYRVWSAAASTGEEPYSIAMTLADTLG 142 (287)
T ss_pred ---------------------------------HHHHH----HH----hcC-CCEEEEEccccCCHHHHHHHHHHHHhhc
Confidence 11111 11 111 45799999999996 5666666432
Q ss_pred ----CCeEEEEeCCHHHHHHHHHHH------------------Hh-----c------CCCCCCeEEEEeCCCCCCCC-CC
Q 048398 209 ----SAKVTGLDLSPYFLAVAQLKE------------------KK-----G------GPRKNPISWVHAIGEDSGLP-SK 254 (280)
Q Consensus 209 ----~~~v~gvDisp~~l~~A~~~~------------------~~-----~------~~~~~~v~~~~~d~~~~~~~-~~ 254 (280)
..+|+|+|+|+.+++.|++-. .. . +.....|+|.+.|+.+.+++ .+
T Consensus 143 ~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~ 222 (287)
T PRK10611 143 TAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPG 222 (287)
T ss_pred ccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCC
Confidence 368999999999999998731 10 0 01346789999999885543 57
Q ss_pred ceeeEEechhhhhCCChhhhhhhhc
Q 048398 255 SFDVVSLSYVVCLLSNSEHLSVERC 279 (280)
Q Consensus 255 sfDlVi~~~vlh~l~d~~~~~~l~~ 279 (280)
.||+|+|.+|+.|++++.+..++++
T Consensus 223 ~fD~I~cRNvliyF~~~~~~~vl~~ 247 (287)
T PRK10611 223 PFDAIFCRNVMIYFDKTTQERILRR 247 (287)
T ss_pred CcceeeHhhHHhcCCHHHHHHHHHH
Confidence 8999999999999999888777664
No 78
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.25 E-value=1.4e-10 Score=99.01 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=69.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..+|||+|||+|.++..+++.. .+++++|+++.+++.|++++... ...+++++++|+.+...+.++||+|++...
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL--GLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC--CCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 66899999999999999888874 58999999999999999999876 345799999998664233478999999998
Q ss_pred hhhCCC
Q 048398 265 VCLLSN 270 (280)
Q Consensus 265 lh~l~d 270 (280)
++++++
T Consensus 154 ~~~~~~ 159 (212)
T PRK00312 154 APEIPR 159 (212)
T ss_pred chhhhH
Confidence 888754
No 79
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.24 E-value=2.7e-11 Score=101.41 Aligned_cols=80 Identities=20% Similarity=0.242 Sum_probs=67.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..+|||+|||+|.+++.+++.+|..+|+++|+++.+++.|++++..+ ...+++++.+|... +++ ++||+|++...
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~--~~~~i~~~~~d~~~-~~~-~~~D~v~~~~~ 106 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF--GCGNIDIIPGEAPI-ELP-GKADAIFIGGS 106 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh--CCCCeEEEecCchh-hcC-cCCCEEEECCC
Confidence 677999999999999999999988899999999999999999998876 23579999998753 343 57999999876
Q ss_pred hhhC
Q 048398 265 VCLL 268 (280)
Q Consensus 265 lh~l 268 (280)
.+++
T Consensus 107 ~~~~ 110 (187)
T PRK08287 107 GGNL 110 (187)
T ss_pred ccCH
Confidence 5544
No 80
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.24 E-value=6.8e-11 Score=105.51 Aligned_cols=74 Identities=28% Similarity=0.453 Sum_probs=65.7
Q ss_pred CcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
.+|||+|||+|.+++.++..+|+.+|+|+|+|+.+++.|++|+..+ +...+++|+++|+.+. ++.++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~-~~~~~v~~~~~d~~~~-~~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN-QLEHRVEFIQSNLFEP-LAGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEECchhcc-CcCCCccEEEEC
Confidence 6899999999999999999998899999999999999999999877 3445699999998763 555579999997
No 81
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.24 E-value=5.3e-11 Score=110.04 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=65.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC-CCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP-SKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~sfDlVi~~~ 263 (280)
+..+|||+|||+|.+++.+++.+|+++|+|+|+|+.+++.|++|+..+ ..+++++++|+.+..++ .++||+|+++=
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~---g~rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL---GARVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CCcEEEEEcchhccccccCCCccEEEECC
Confidence 456899999999999999999888999999999999999999999876 24899999998764333 45799999975
No 82
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.23 E-value=2.1e-11 Score=102.74 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=69.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC---CCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG---LPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~sfDlVi~ 261 (280)
...+|||||||+|.++..+++.+|..+++|+|+++.+++.|+.++... ...+++++++|+.+++ ++++++|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~--~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL--GLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh--CCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 556899999999999999999999999999999999999999998776 3458999999997653 45668999999
Q ss_pred chhhhh
Q 048398 262 SYVVCL 267 (280)
Q Consensus 262 ~~vlh~ 267 (280)
++..++
T Consensus 94 ~~pdpw 99 (194)
T TIGR00091 94 NFPDPW 99 (194)
T ss_pred ECCCcC
Confidence 876544
No 83
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.23 E-value=2.4e-11 Score=104.96 Aligned_cols=81 Identities=23% Similarity=0.226 Sum_probs=71.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~sfDlVi~~ 262 (280)
..++|||+|||+|..++.++++.+.++++|||+++.+.+.|+++.+.+ +..++|+++++|+.+.. .+..+||+|+||
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-PLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-cchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 578999999999999999999988899999999999999999999988 68899999999998864 334579999998
Q ss_pred hhhh
Q 048398 263 YVVC 266 (280)
Q Consensus 263 ~vlh 266 (280)
=-+.
T Consensus 123 PPyf 126 (248)
T COG4123 123 PPYF 126 (248)
T ss_pred CCCC
Confidence 5433
No 84
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.23 E-value=6.2e-11 Score=109.89 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=68.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||+|.++..+++.+ +++|+|+|+|+.+++.|+++... ..+++..+|..++ +++||+|++..+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~-----l~v~~~~~D~~~l---~~~fD~Ivs~~~ 237 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG-----LPVEIRLQDYRDL---NGQFDRIVSVGM 237 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc-----CeEEEEECchhhc---CCCCCEEEEeCc
Confidence 66799999999999999999876 68999999999999999998742 2488888888765 468999999999
Q ss_pred hhhCCChh
Q 048398 265 VCLLSNSE 272 (280)
Q Consensus 265 lh~l~d~~ 272 (280)
++|+++..
T Consensus 238 ~ehvg~~~ 245 (383)
T PRK11705 238 FEHVGPKN 245 (383)
T ss_pred hhhCChHH
Confidence 99997643
No 85
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.9e-11 Score=106.65 Aligned_cols=71 Identities=28% Similarity=0.356 Sum_probs=62.6
Q ss_pred cEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 188 DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
+|||+|||+|..++.++...|.++|+|+|+||.+++.|++|+..+ +. .++.++++|+..- +. ++||+|++|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-~l-~~~~~~~~dlf~~-~~-~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-GL-VRVLVVQSDLFEP-LR-GKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-CC-ccEEEEeeecccc-cC-CceeEEEeC
Confidence 899999999999999999999999999999999999999999998 34 6777777776653 43 389999998
No 86
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.20 E-value=1.3e-10 Score=101.34 Aligned_cols=77 Identities=27% Similarity=0.380 Sum_probs=67.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
.+.+|||+|||+|.++..+++.+|..+++|+|+++.+++.|+.++... ...+++++++|+.+ ++++++||+|+++-.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~~d~~~-~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL--GLDNVTFLQSDWFE-PLPGGKFDLIVSNPP 163 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CCCeEEEEECchhc-cCcCCceeEEEECCC
Confidence 456899999999999999999998999999999999999999999876 33579999999977 366778999999643
No 87
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.20 E-value=1.2e-10 Score=96.79 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.+++++..+ ..+++++++|+.+.. .++||+|+++..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~d~~~~~--~~~fD~Vi~n~p 91 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN---NVGLDVVMTDLFKGV--RGKFDVILFNPP 91 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc---CCceEEEEccccccc--CCcccEEEECCC
Confidence 567899999999999999999854 9999999999999999999876 236899999987753 358999999998
Q ss_pred hhhCCCh
Q 048398 265 VCLLSNS 271 (280)
Q Consensus 265 lh~l~d~ 271 (280)
+++.++.
T Consensus 92 ~~~~~~~ 98 (179)
T TIGR00537 92 YLPLEDD 98 (179)
T ss_pred CCCCcch
Confidence 8877653
No 88
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=1.3e-10 Score=99.66 Aligned_cols=92 Identities=13% Similarity=0.000 Sum_probs=72.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC----------CCCCCeEEEEeCCCCCCCC-C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG----------PRKNPISWVHAIGEDSGLP-S 253 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~----------~~~~~v~~~~~d~~~~~~~-~ 253 (280)
+..+|||+|||.|..+..|++. +.+|+|+|+|+.+++.+........ ....+|++.++|+.+++.. .
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 5579999999999999999997 8999999999999998743211100 0135799999999987533 2
Q ss_pred CceeeEEechhhhhCCChhhhhhhh
Q 048398 254 KSFDVVSLSYVVCLLSNSEHLSVER 278 (280)
Q Consensus 254 ~sfDlVi~~~vlh~l~d~~~~~~l~ 278 (280)
+.||+|+-..+++|++...+...+.
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~ 139 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQ 139 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHH
Confidence 5799999999999999887755443
No 89
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.3e-10 Score=95.38 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=62.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
.+++|+|+|||||.+++.++-.+ ..+|+|+|++|.+++.+++|..+. ..++.|+.+|+.+. .+.||.++.|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l---~g~v~f~~~dv~~~---~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEEL---LGDVEFVVADVSDF---RGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhh---CCceEEEEcchhhc---CCccceEEEC
Confidence 77889999999999999999874 368999999999999999999875 67899999999987 4568888876
No 90
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.18 E-value=3.4e-10 Score=101.84 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=73.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC-CCCCCC----ceee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGED-SGLPSK----SFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~----sfDl 258 (280)
.+.+|||+|||+|..+..+++..+ +.+++|+|+|+.|++.|++++... ...-+|.++++|+.+ .+++.. ...+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-YPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-CCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 567899999999999999999876 579999999999999999998654 122457889999876 334332 3445
Q ss_pred EEechhhhhCCChhhhhhhhc
Q 048398 259 VSLSYVVCLLSNSEHLSVERC 279 (280)
Q Consensus 259 Vi~~~vlh~l~d~~~~~~l~~ 279 (280)
+++...++++++.+...++++
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~ 162 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRR 162 (301)
T ss_pred EEecccccCCCHHHHHHHHHH
Confidence 666678999998887666654
No 91
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.17 E-value=1.1e-10 Score=105.59 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=78.0
Q ss_pred CcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC
Q 048398 157 ASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRK 236 (280)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~ 236 (280)
...|.+.+......+.+.+.+.+... ++.+|||+|||+|.+++.+++. +.+|+|+|+++.+++.|+++++.+ + .
T Consensus 147 ~~sF~Q~n~~~~~~l~~~v~~~l~~~--~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~-~-l 220 (315)
T PRK03522 147 PQSFFQTNPAVAAQLYATARDWVREL--PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAEL-G-L 220 (315)
T ss_pred CCeeeecCHHHHHHHHHHHHHHHHhc--CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHc-C-C
Confidence 34456666666666666555554322 4689999999999999999986 679999999999999999999887 3 4
Q ss_pred CCeEEEEeCCCCCCC-CCCceeeEEec
Q 048398 237 NPISWVHAIGEDSGL-PSKSFDVVSLS 262 (280)
Q Consensus 237 ~~v~~~~~d~~~~~~-~~~sfDlVi~~ 262 (280)
.+++|+++|+.+... ..++||+|+++
T Consensus 221 ~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 221 TNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 689999999977532 23579999987
No 92
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.15 E-value=1.1e-10 Score=97.72 Aligned_cols=75 Identities=32% Similarity=0.396 Sum_probs=61.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCC-CCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIG-EDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~sfDlVi~~~ 263 (280)
.+.-|||||||+|..+..+.+. +...+|+||||.|+++|.+..-+. .++.+|. +.+||+.++||-+|+..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~eg-------dlil~DMG~GlpfrpGtFDg~ISIS 120 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEG-------DLILCDMGEGLPFRPGTFDGVISIS 120 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhc-------CeeeeecCCCCCCCCCccceEEEee
Confidence 5778999999999999999987 789999999999999999743221 3666664 66889999999999876
Q ss_pred hhhhC
Q 048398 264 VVCLL 268 (280)
Q Consensus 264 vlh~l 268 (280)
.++++
T Consensus 121 AvQWL 125 (270)
T KOG1541|consen 121 AVQWL 125 (270)
T ss_pred eeeee
Confidence 66554
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.14 E-value=2.7e-10 Score=104.04 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=67.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
...+|||+|||+|.++..+++.+|..+|+++|+|+.+++.|+++++.+ +. ..+++.+|+... . .++||+|+++-.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-~l--~~~~~~~D~~~~-~-~~~fDlIvsNPP 270 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-GL--EGEVFASNVFSD-I-KGRFDMIISNPP 270 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CC--CCEEEEcccccc-c-CCCccEEEECCC
Confidence 345899999999999999999999899999999999999999999887 22 356778887653 3 568999999999
Q ss_pred hhhC
Q 048398 265 VCLL 268 (280)
Q Consensus 265 lh~l 268 (280)
+|+.
T Consensus 271 FH~g 274 (342)
T PRK09489 271 FHDG 274 (342)
T ss_pred ccCC
Confidence 8864
No 94
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.14 E-value=1.5e-10 Score=111.05 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=65.9
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
+.+|||+|||+|.+++.++..+|+++|+|+|+|+.+++.|++|+..+ +..++++++++|+.+. ++.++||+|+++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-~l~~~v~~~~~D~~~~-~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-EVTDRIQIIHSNWFEN-IEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-CCccceeeeecchhhh-CcCCCccEEEEC
Confidence 46899999999999999999889999999999999999999999877 4556899999998653 455689999996
No 95
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.12 E-value=3.2e-10 Score=93.44 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.. ..+++++++|+.++++++.+||+|+++.-
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~----~~~v~ii~~D~~~~~~~~~~~d~vi~n~P 86 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA----ADNLTVIHGDALKFDLPKLQPYKVVGNLP 86 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc----CCCEEEEECchhcCCccccCCCEEEECCC
Confidence 5678999999999999999988 67999999999999999998753 24899999999998877767999998865
Q ss_pred hh
Q 048398 265 VC 266 (280)
Q Consensus 265 lh 266 (280)
++
T Consensus 87 y~ 88 (169)
T smart00650 87 YN 88 (169)
T ss_pred cc
Confidence 44
No 96
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.12 E-value=5.7e-10 Score=97.77 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=61.7
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC--CCCceeeEEech
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL--PSKSFDVVSLSY 263 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~sfDlVi~~~ 263 (280)
..+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.|++|+..+ +++++++|+.+... ..++||+|+++-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-----~~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-----GGTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-----CCEEEEeechhhcchhcCCCEeEEEECC
Confidence 45899999999999999999888889999999999999999999876 25789999876311 135799999984
No 97
>PHA03411 putative methyltransferase; Provisional
Probab=99.11 E-value=3e-10 Score=99.53 Aligned_cols=82 Identities=16% Similarity=0.285 Sum_probs=69.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
...+|||+|||+|.+++.+++..+..+|+|+|+++.+++.|+++. .+++|+++|+.+.. ..++||+|+++--
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~-~~~kFDlIIsNPP 135 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFE-SNEKFDVVISNPP 135 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhc-ccCCCcEEEEcCC
Confidence 456899999999999999988876789999999999999998763 25789999998874 3468999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
+++.+..++.
T Consensus 136 F~~l~~~d~~ 145 (279)
T PHA03411 136 FGKINTTDTK 145 (279)
T ss_pred ccccCchhhh
Confidence 9887765543
No 98
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.11 E-value=3.4e-10 Score=107.12 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=76.1
Q ss_pred cchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 048398 158 SSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKN 237 (280)
Q Consensus 158 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~ 237 (280)
..|.+.+......+.+.+.+.+.. . ++.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|+..+ ...
T Consensus 272 ~~F~q~n~~~~e~l~~~vl~~l~~-~-~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~--~~~ 345 (443)
T PRK13168 272 RDFIQVNAQVNQKMVARALEWLDP-Q-PGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRN--GLD 345 (443)
T ss_pred CCeEEcCHHHHHHHHHHHHHHhcC-C-CCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHc--CCC
Confidence 345555555555555555555421 1 5679999999999999999988 479999999999999999999877 346
Q ss_pred CeEEEEeCCCCC----CCCCCceeeEEec
Q 048398 238 PISWVHAIGEDS----GLPSKSFDVVSLS 262 (280)
Q Consensus 238 ~v~~~~~d~~~~----~~~~~sfDlVi~~ 262 (280)
+++|+++|+.+. ++++++||+|+++
T Consensus 346 ~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 346 NVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred ceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 799999998653 2345679999975
No 99
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.10 E-value=5e-10 Score=95.30 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=67.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
++.+|||||||+|.++..+++.. +...|+++|+++..++.|++++... ...+|.++++|+.....+.++||.|++..
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~--~~~nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL--GIDNVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH--TTHSEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh--ccCceeEEEcchhhccccCCCcCEEEEee
Confidence 77899999999999999999885 3457999999999999999999887 45699999999876533457899999999
Q ss_pred hhhhCCC
Q 048398 264 VVCLLSN 270 (280)
Q Consensus 264 vlh~l~d 270 (280)
....+|.
T Consensus 150 a~~~ip~ 156 (209)
T PF01135_consen 150 AVPEIPE 156 (209)
T ss_dssp BBSS--H
T ss_pred ccchHHH
Confidence 8887764
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.10 E-value=3.4e-10 Score=104.08 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=70.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC--CCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS--GLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~sfDlVi~~ 262 (280)
....+||||||+|.++..+++..|...++|+|+++.+++.|..++..+ ...++.++++|+..+ .++++++|.|+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~--gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL--NLKNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc--CCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 456899999999999999999999999999999999999999998876 457899999998654 4678899999987
Q ss_pred hhhhh
Q 048398 263 YVVCL 267 (280)
Q Consensus 263 ~vlh~ 267 (280)
+...+
T Consensus 200 FPdPW 204 (390)
T PRK14121 200 FPVPW 204 (390)
T ss_pred CCCCc
Confidence 65443
No 101
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.09 E-value=8.9e-10 Score=97.54 Aligned_cols=75 Identities=32% Similarity=0.466 Sum_probs=65.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
+..+|||+|||+|.++..++..+|..+++|+|+|+.+++.|++++... ...++.++++|+... ++.++||+|+++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~--~~~~i~~~~~d~~~~-~~~~~fD~Iv~n 182 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG--LGARVEFLQGDWFEP-LPGGRFDLIVSN 182 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC--CCCcEEEEEccccCc-CCCCceeEEEEC
Confidence 567899999999999999999998899999999999999999998722 456899999998653 445789999996
No 102
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=5.2e-10 Score=101.15 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=71.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS-AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~-~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
+..+|||||||+|.++..+++..+. .+|+++|+++.+++.|++++... ...++.++++|+.....+.++||+|++..
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~--g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL--GIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc--CCCcEEEEeCChhhcccccCCccEEEECC
Confidence 5679999999999999999988743 47999999999999999999877 34689999999877644456799999988
Q ss_pred hhhhCCC
Q 048398 264 VVCLLSN 270 (280)
Q Consensus 264 vlh~l~d 270 (280)
.++++++
T Consensus 158 g~~~ip~ 164 (322)
T PRK13943 158 GVDEVPE 164 (322)
T ss_pred chHHhHH
Confidence 8877764
No 103
>PRK04457 spermidine synthase; Provisional
Probab=99.05 E-value=6.9e-10 Score=97.87 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=65.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-CCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-GLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~sfDlVi~~~ 263 (280)
++++|||||||+|.++..+++.+|+.+++++|++|.+++.|++++... +..++++++++|+.+. .-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-ENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-CCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 678999999999999999999999999999999999999999998654 2346899999998653 11235799999863
No 104
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.3e-09 Score=91.60 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=73.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||+|..+..+++. ..+|+.+|+.+...+.|++|++.. +..||.++++|+..---+.++||.|++...
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~~l--g~~nV~v~~gDG~~G~~~~aPyD~I~Vtaa 147 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLETL--GYENVTVRHGDGSKGWPEEAPYDRIIVTAA 147 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHHHc--CCCceEEEECCcccCCCCCCCcCEEEEeec
Confidence 7889999999999999999999 559999999999999999999987 455799999999876344589999999999
Q ss_pred hhhCCC
Q 048398 265 VCLLSN 270 (280)
Q Consensus 265 lh~l~d 270 (280)
...+|+
T Consensus 148 a~~vP~ 153 (209)
T COG2518 148 APEVPE 153 (209)
T ss_pred cCCCCH
Confidence 999887
No 105
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.4e-09 Score=95.93 Aligned_cols=78 Identities=22% Similarity=0.221 Sum_probs=65.5
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechhh
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYVV 265 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vl 265 (280)
..+|||+|||.|.+++.+++.+|..+++.+|+|..+++.|++|+..| ...+..+...|..+- ..+ +||+|+||=-|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N--~~~~~~v~~s~~~~~-v~~-kfd~IisNPPf 234 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN--GVENTEVWASNLYEP-VEG-KFDLIISNPPF 234 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc--CCCccEEEEeccccc-ccc-cccEEEeCCCc
Confidence 44999999999999999999999999999999999999999999988 344445556665543 444 89999999877
Q ss_pred hh
Q 048398 266 CL 267 (280)
Q Consensus 266 h~ 267 (280)
|.
T Consensus 235 h~ 236 (300)
T COG2813 235 HA 236 (300)
T ss_pred cC
Confidence 74
No 106
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.03 E-value=1.2e-09 Score=96.49 Aligned_cols=95 Identities=21% Similarity=0.185 Sum_probs=69.3
Q ss_pred HHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCC
Q 048398 174 AIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPS 253 (280)
Q Consensus 174 ~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 253 (280)
.+..++..+ .+++|||||||.|..++.++..+ ...|+|+|.++..+...+....-. +...++.++...++++|. .
T Consensus 106 rl~p~l~~L--~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~l-g~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 106 RLLPHLPDL--KGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHFL-GQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHhhhCCc--CCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHHh-CCCccEEEcCcchhhccc-c
Confidence 344444433 88999999999999999999984 347999999988776644332222 112244455466788776 6
Q ss_pred CceeeEEechhhhhCCChhh
Q 048398 254 KSFDVVSLSYVVCLLSNSEH 273 (280)
Q Consensus 254 ~sfDlVi~~~vlh~l~d~~~ 273 (280)
+.||+|+|..||-|..++-.
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~ 200 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLD 200 (315)
T ss_pred CCcCEEEEeeehhccCCHHH
Confidence 78999999999999988765
No 107
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.03 E-value=1.4e-09 Score=80.00 Aligned_cols=78 Identities=29% Similarity=0.417 Sum_probs=65.1
Q ss_pred cEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC-CCCceeeEEechhhh
Q 048398 188 DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL-PSKSFDVVSLSYVVC 266 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~sfDlVi~~~vlh 266 (280)
+|+|+|||+|..+..+.+ .+..+++++|+++.++..+++..... ...+++++++|+.+... ..++||+|+++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc--cccceEEEEcChhhhccccCCceEEEEEcccee
Confidence 589999999999999988 55789999999999999998644433 45689999999988753 456799999999998
Q ss_pred hC
Q 048398 267 LL 268 (280)
Q Consensus 267 ~l 268 (280)
++
T Consensus 78 ~~ 79 (107)
T cd02440 78 HL 79 (107)
T ss_pred eh
Confidence 84
No 108
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.02 E-value=3.3e-09 Score=95.63 Aligned_cols=84 Identities=17% Similarity=0.047 Sum_probs=65.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEE-eCCCCCC----CCCCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVH-AIGEDSG----LPSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~-~d~~~~~----~~~~sfDlV 259 (280)
...+|||||||+|.....++...++++++|+|+++.+++.|++|++.+++...+|++++ .+..... .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 46789999999998888887777789999999999999999999998733566888864 3332221 245689999
Q ss_pred EechhhhhC
Q 048398 260 SLSYVVCLL 268 (280)
Q Consensus 260 i~~~vlh~l 268 (280)
+||=-++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999665543
No 109
>PRK14967 putative methyltransferase; Provisional
Probab=99.02 E-value=1.6e-09 Score=93.30 Aligned_cols=74 Identities=20% Similarity=0.155 Sum_probs=62.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
+..+|||+|||+|.++..+++.. ..+++|+|+++.+++.+++++..+ ..+++++++|+.+. +++++||+|+++-
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~---~~~~~~~~~d~~~~-~~~~~fD~Vi~np 109 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA---GVDVDVRRGDWARA-VEFRPFDVVVSNP 109 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh---CCeeEEEECchhhh-ccCCCeeEEEECC
Confidence 56799999999999999998863 359999999999999999998776 22688999998764 5667899999984
No 110
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.02 E-value=1.5e-09 Score=94.16 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=66.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-C-----CCCCcee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-G-----LPSKSFD 257 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~sfD 257 (280)
++++|||+|||+|..++.++...+ +.+|+++|+++.+++.|+++++.+ +..++++++.+|+.+. + .+.++||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-GVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 788999999999999999988764 579999999999999999999988 5667899999998764 1 1246899
Q ss_pred eEEech
Q 048398 258 VVSLSY 263 (280)
Q Consensus 258 lVi~~~ 263 (280)
+|++..
T Consensus 147 ~VfiDa 152 (234)
T PLN02781 147 FAFVDA 152 (234)
T ss_pred EEEECC
Confidence 999863
No 111
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.02 E-value=5.8e-10 Score=93.95 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=61.8
Q ss_pred CCCcEEEECCCCCh----hHHHHHhhC----C-CCeEEEEeCCHHHHHHHHHH------------------H-HhcC---
Q 048398 185 EIRDILDIGCSVGV----STKCLADKF----P-SAKVTGLDLSPYFLAVAQLK------------------E-KKGG--- 233 (280)
Q Consensus 185 ~~~~ILDiGcGtG~----~a~~l~~~~----p-~~~v~gvDisp~~l~~A~~~------------------~-~~~~--- 233 (280)
++.+|+.+||++|. +++.+.+.. + ..+|+|+|+|+.+++.|++- + ...+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56799999999996 556666622 1 36999999999999999871 1 0110
Q ss_pred ----CCCCCeEEEEeCCCCCCCCCCceeeEEechhhhhCCChhhhhhhhc
Q 048398 234 ----PRKNPISWVHAIGEDSGLPSKSFDVVSLSYVVCLLSNSEHLSVERC 279 (280)
Q Consensus 234 ----~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d~~~~~~l~~ 279 (280)
....+|+|.+.|+.+.+.+.+.||+|+|++||.|++++.+..++++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~ 160 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRR 160 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHH
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHH
Confidence 1345799999999984345678999999999999999988877664
No 112
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.01 E-value=2.6e-09 Score=90.31 Aligned_cols=78 Identities=21% Similarity=0.173 Sum_probs=64.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-CCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-GLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~sfDlVi~~ 262 (280)
+..+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++..+ +..+++.++.+|..+. +...++||+|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-GVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-CCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 67899999999999999998764 5679999999999999999999887 3457899999998764 2223579999985
Q ss_pred h
Q 048398 263 Y 263 (280)
Q Consensus 263 ~ 263 (280)
.
T Consensus 119 ~ 119 (198)
T PRK00377 119 G 119 (198)
T ss_pred C
Confidence 4
No 113
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.01 E-value=2.9e-09 Score=86.86 Aligned_cols=80 Identities=25% Similarity=0.217 Sum_probs=66.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
...+|||+|||.|.+.+.|++..-...++|+|.|+.+++.|+..++.+ +..+.|+|.+.|+.+..+-.++||+|+=...
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~-~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD-GFSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc-CCCcceeEEEeeccCCcccccceeEEeecCc
Confidence 344999999999999999998853446999999999999998888777 4555699999999986666778999986544
Q ss_pred h
Q 048398 265 V 265 (280)
Q Consensus 265 l 265 (280)
+
T Consensus 146 ~ 146 (227)
T KOG1271|consen 146 L 146 (227)
T ss_pred e
Confidence 4
No 114
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.00 E-value=2.2e-09 Score=90.73 Aligned_cols=77 Identities=13% Similarity=-0.003 Sum_probs=62.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-CCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-GLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~sfDlVi~~~ 263 (280)
...+|||+|||+|.+++.++... ..+|+++|+++.+++.+++|++.+ ...+++++++|+.+. +...++||+|+++=
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~--~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATL--KAGNARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHh--CCCcEEEEEchHHHHHhhcCCCceEEEECC
Confidence 56799999999999999755554 469999999999999999999887 245899999998763 11245699999874
Q ss_pred h
Q 048398 264 V 264 (280)
Q Consensus 264 v 264 (280)
-
T Consensus 130 P 130 (199)
T PRK10909 130 P 130 (199)
T ss_pred C
Confidence 4
No 115
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.00 E-value=1.5e-09 Score=100.43 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=79.4
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 048398 156 YASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPR 235 (280)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~ 235 (280)
....|.+.+......+...+.+.+... .+.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|++|++.+ .
T Consensus 206 ~~~~F~Q~n~~~~~~l~~~~~~~l~~~--~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~--~ 279 (374)
T TIGR02085 206 RPQSFFQTNPKVAAQLYATARQWVREI--PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQML--G 279 (374)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHhc--CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHc--C
Confidence 445577778888877777666554222 4579999999999999999965 679999999999999999999888 3
Q ss_pred CCCeEEEEeCCCCCCC-CCCceeeEEec
Q 048398 236 KNPISWVHAIGEDSGL-PSKSFDVVSLS 262 (280)
Q Consensus 236 ~~~v~~~~~d~~~~~~-~~~sfDlVi~~ 262 (280)
..+++|+++|+++... ..++||+|++.
T Consensus 280 ~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 280 LDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 4589999999976421 12469999886
No 116
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.98 E-value=2.8e-09 Score=91.52 Aligned_cols=90 Identities=16% Similarity=0.019 Sum_probs=72.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhc-------C---CCCCCeEEEEeCCCCCCCC--
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKG-------G---PRKNPISWVHAIGEDSGLP-- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~-------~---~~~~~v~~~~~d~~~~~~~-- 252 (280)
+..+||+.|||.|..+..|++. +.+|+|+|+|+.+++.+.+..... . ....+|++.++|+.+++.+
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4579999999999999999998 889999999999999986632100 0 1235799999999998632
Q ss_pred -CCceeeEEechhhhhCCChhhhhh
Q 048398 253 -SKSFDVVSLSYVVCLLSNSEHLSV 276 (280)
Q Consensus 253 -~~sfDlVi~~~vlh~l~d~~~~~~ 276 (280)
.++||+|+-...|+++|+..+...
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y 145 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNY 145 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHH
Confidence 257999999999999998877543
No 117
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.98 E-value=4.2e-09 Score=88.79 Aligned_cols=75 Identities=11% Similarity=0.101 Sum_probs=60.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-CCCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-GLPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~sfDlVi~ 261 (280)
+..+|||+|||+|.++..+++..|+.+|+++|++|.+++.+++++... ...+++++.+|+.+. +.....+|.+++
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~--~~~~v~~~~~d~~~~~~~~~~~~d~v~~ 115 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF--GVKNVEVIEGSAPECLAQLAPAPDRVCI 115 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--CCCCeEEEECchHHHHhhCCCCCCEEEE
Confidence 567999999999999999998888899999999999999999999876 336799999998652 111223576655
No 118
>PRK14968 putative methyltransferase; Provisional
Probab=98.98 E-value=3.3e-09 Score=88.28 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=65.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC-eEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNP-ISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
+.++|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++..+ +...+ +.++++|..+. +++++||+|+++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~ 98 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLN-NIRNNGVEVIRSDLFEP-FRGDKFDVILFNP 98 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEecccccc-ccccCceEEEECC
Confidence 6678999999999999999988 789999999999999999998876 23222 88999998764 5555899999876
Q ss_pred hhh
Q 048398 264 VVC 266 (280)
Q Consensus 264 vlh 266 (280)
.+.
T Consensus 99 p~~ 101 (188)
T PRK14968 99 PYL 101 (188)
T ss_pred CcC
Confidence 543
No 119
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.98 E-value=4.6e-09 Score=90.77 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=66.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC-----CCCCCCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGED-----SGLPSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~sfDlV 259 (280)
++..|||+|||+|..+..++...|.++++++|.|+.++..|.+|+... +..+++..++.+.+. .+.+.+++|++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~-~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL-KLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH-hhcCceEEEecccccccccccccccCceeEE
Confidence 566899999999999999999999999999999999999999999887 577788887665432 33557899999
Q ss_pred Eech
Q 048398 260 SLSY 263 (280)
Q Consensus 260 i~~~ 263 (280)
++|=
T Consensus 227 vsNP 230 (328)
T KOG2904|consen 227 VSNP 230 (328)
T ss_pred ecCC
Confidence 9983
No 120
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.96 E-value=3.2e-09 Score=96.67 Aligned_cols=74 Identities=22% Similarity=0.117 Sum_probs=65.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
++.+|||+|||+|.+++.++.. +.+++|+|+++.|++.|+.|+... + ..+++++++|+.++++++++||+|+++
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~-g-~~~i~~~~~D~~~l~~~~~~~D~Iv~d 255 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHY-G-IEDFFVKRGDATKLPLSSESVDAIATD 255 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHh-C-CCCCeEEecchhcCCcccCCCCEEEEC
Confidence 5678999999999999887765 789999999999999999999877 2 344899999999998877899999996
No 121
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.96 E-value=4.7e-09 Score=92.41 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=63.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||+|.++..+++. ..+++|+|+++.+++.+++++.. ..+++++++|+.+++++ .||.|+++.-
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCCch--hceEEEEcCC
Confidence 5689999999999999999998 56999999999999999988753 25899999999988765 4899998865
Q ss_pred h
Q 048398 265 V 265 (280)
Q Consensus 265 l 265 (280)
.
T Consensus 101 y 101 (258)
T PRK14896 101 Y 101 (258)
T ss_pred c
Confidence 4
No 122
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.95 E-value=2.9e-09 Score=90.37 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=65.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-C-----CCCCcee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-G-----LPSKSFD 257 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~sfD 257 (280)
++++||+|||++|..++.+++..| +.+|+.+|++|...+.|+++++.. +..++|+++.+|+.+. + .+.++||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-g~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-GLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-TGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-CCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 789999999999999999999876 589999999999999999999987 5667999999998653 1 1235799
Q ss_pred eEEech
Q 048398 258 VVSLSY 263 (280)
Q Consensus 258 lVi~~~ 263 (280)
+|++-.
T Consensus 124 ~VFiDa 129 (205)
T PF01596_consen 124 FVFIDA 129 (205)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 999854
No 123
>PLN02672 methionine S-methyltransferase
Probab=98.94 E-value=2.7e-09 Score=108.98 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=64.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC--------------CCCCCeEEEEeCCCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG--------------PRKNPISWVHAIGEDSG 250 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~--------------~~~~~v~~~~~d~~~~~ 250 (280)
++.+|||+|||+|..++.+++.+|..+|+|+|+|+.+++.|++|+..++ ...++++|+++|+.+.
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-
Confidence 3568999999999999999999988899999999999999999998751 0124799999998765
Q ss_pred CCC--CceeeEEec
Q 048398 251 LPS--KSFDVVSLS 262 (280)
Q Consensus 251 ~~~--~sfDlVi~~ 262 (280)
+++ .+||+|++|
T Consensus 197 ~~~~~~~fDlIVSN 210 (1082)
T PLN02672 197 CRDNNIELDRIVGC 210 (1082)
T ss_pred ccccCCceEEEEEC
Confidence 332 369999997
No 124
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.93 E-value=9e-09 Score=84.85 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=68.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCC-ceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSK-SFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-sfDlVi~~~ 263 (280)
+..+++|||||||..++.++..+|..+|+++|-++.+++..++|.+.. ..++++++.+++-+. +++- +||.|+...
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f--g~~n~~vv~g~Ap~~-L~~~~~~daiFIGG 110 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF--GVDNLEVVEGDAPEA-LPDLPSPDAIFIGG 110 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--CCCcEEEEeccchHh-hcCCCCCCEEEECC
Confidence 778999999999999999998899999999999999999999999998 489999999999775 3222 699999876
Q ss_pred h
Q 048398 264 V 264 (280)
Q Consensus 264 v 264 (280)
.
T Consensus 111 g 111 (187)
T COG2242 111 G 111 (187)
T ss_pred C
Confidence 5
No 125
>PHA03412 putative methyltransferase; Provisional
Probab=98.93 E-value=2.7e-09 Score=91.58 Aligned_cols=74 Identities=9% Similarity=0.204 Sum_probs=61.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhC---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF---PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~---p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~ 261 (280)
...+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|+++.. ++.|+++|+...++ +++||+|++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~~~~-~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALTTEF-DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhcccc-cCCccEEEE
Confidence 46799999999999999998864 35699999999999999997742 47899999987654 468999999
Q ss_pred chhhh
Q 048398 262 SYVVC 266 (280)
Q Consensus 262 ~~vlh 266 (280)
|=-++
T Consensus 121 NPPY~ 125 (241)
T PHA03412 121 NPPFG 125 (241)
T ss_pred CCCCC
Confidence 85444
No 126
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.92 E-value=4.4e-09 Score=99.27 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=75.3
Q ss_pred CcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC
Q 048398 157 ASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRK 236 (280)
Q Consensus 157 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~ 236 (280)
...|.+.+......+.+.+.+.+. .. +..+|||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+..+ ..
T Consensus 266 ~~~F~Q~N~~~~~~l~~~~~~~l~-~~-~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~--~~ 339 (431)
T TIGR00479 266 ARDFFQVNSGQNEKLVDRALEALE-LQ-GEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELN--GI 339 (431)
T ss_pred CCceeecCHHHHHHHHHHHHHHhc-cC-CCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHh--CC
Confidence 334555555555555555544432 11 5579999999999999999987 568999999999999999999887 35
Q ss_pred CCeEEEEeCCCCC----CCCCCceeeEEec
Q 048398 237 NPISWVHAIGEDS----GLPSKSFDVVSLS 262 (280)
Q Consensus 237 ~~v~~~~~d~~~~----~~~~~sfDlVi~~ 262 (280)
.+++|+++|+.+. +..+++||+|++.
T Consensus 340 ~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 340 ANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 6899999998653 1234579999963
No 127
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=5e-09 Score=92.93 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=60.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|||||||+|.++..+++.. .+|+|+|+++.|++.+++++.. .+++++++|+.++++++-.+|.|++|.-
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 56789999999999999999985 4999999999999999887632 4899999999998765322588877743
No 128
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.91 E-value=4.9e-09 Score=93.80 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=68.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+++.|||+|||+|.+++..++.+ ..+|+|+|-| .+.+.|++.+..| +..+.|+++++.+++.-+|..+.|+|++-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S-~ia~~a~~iv~~N-~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEAS-SIADFARKIVKDN-GLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEech-HHHHHHHHHHHhc-CccceEEEeecceEEEecCccceeEEeehhh
Confidence 88999999999999999999996 5689999997 5559999999988 6777899999999998888778999998653
No 129
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.91 E-value=1.6e-10 Score=97.35 Aligned_cols=82 Identities=29% Similarity=0.369 Sum_probs=63.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~sfDlVi~~ 262 (280)
..+++||+|||||..+..+... ..+++|+|||.+|+++|.++--- -++.++++..+- ....+||+|.+.
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~Y-------D~L~~Aea~~Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLY-------DTLYVAEAVLFLEDLTQERFDLIVAA 195 (287)
T ss_pred ccceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccch-------HHHHHHHHHHHhhhccCCcccchhhh
Confidence 4789999999999999999988 67899999999999999876221 134445543221 345689999999
Q ss_pred hhhhhCCChhhhh
Q 048398 263 YVVCLLSNSEHLS 275 (280)
Q Consensus 263 ~vlh~l~d~~~~~ 275 (280)
.|+.++-+.+.+.
T Consensus 196 DVl~YlG~Le~~~ 208 (287)
T COG4976 196 DVLPYLGALEGLF 208 (287)
T ss_pred hHHHhhcchhhHH
Confidence 9999998876653
No 130
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.90 E-value=7.9e-09 Score=92.46 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=64.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..+|||||||+|.++..+++. +.+|+|+|+++.+++.+++++... +..++++++++|+.+.+++ .||+|+++.-
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~-~~~~~v~ii~~Dal~~~~~--~~d~VvaNlP 110 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNS-PLASKLEVIEGDALKTEFP--YFDVCVANVP 110 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhc-CCCCcEEEEECCHhhhccc--ccCEEEecCC
Confidence 5679999999999999999987 578999999999999999998765 2356899999999887654 5899888643
No 131
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4.5e-09 Score=82.63 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCC
Q 048398 168 RGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGE 247 (280)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~ 247 (280)
...+...|...+.++ .++.++|+|||.|.+++...-. ....|+|+||+|.+++.++.|+... .-++.++++|+.
T Consensus 33 AasM~~~Ih~Tygdi--Egkkl~DLgcgcGmLs~a~sm~-~~e~vlGfDIdpeALEIf~rNaeEf---EvqidlLqcdil 106 (185)
T KOG3420|consen 33 AASMLYTIHNTYGDI--EGKKLKDLGCGCGMLSIAFSMP-KNESVLGFDIDPEALEIFTRNAEEF---EVQIDLLQCDIL 106 (185)
T ss_pred HHHHHHHHHhhhccc--cCcchhhhcCchhhhHHHhhcC-CCceEEeeecCHHHHHHHhhchHHh---hhhhheeeeecc
Confidence 334444555555444 7899999999999999665533 2346999999999999999999876 446799999999
Q ss_pred CCCCCCCceeeEEechhh
Q 048398 248 DSGLPSKSFDVVSLSYVV 265 (280)
Q Consensus 248 ~~~~~~~sfDlVi~~~vl 265 (280)
+.-+..+.||.++.+--|
T Consensus 107 dle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 107 DLELKGGIFDTAVINPPF 124 (185)
T ss_pred chhccCCeEeeEEecCCC
Confidence 886667889999987544
No 132
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.89 E-value=6.5e-09 Score=88.65 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=58.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------CCCCc
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------LPSKS 255 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~s 255 (280)
++.+|||||||+|.++..+++.. +..+|+|+|+++ + + ...+++++++|+.+.+ +++++
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~--~~~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------D--PIVGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------c--CCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 67799999999999999998886 457999999998 1 1 1246899999998853 56778
Q ss_pred eeeEEechhhhhCCC
Q 048398 256 FDVVSLSYVVCLLSN 270 (280)
Q Consensus 256 fDlVi~~~vlh~l~d 270 (280)
||+|+++...+...+
T Consensus 118 ~D~V~S~~~~~~~g~ 132 (209)
T PRK11188 118 VQVVMSDMAPNMSGT 132 (209)
T ss_pred CCEEecCCCCccCCC
Confidence 999999877665543
No 133
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.86 E-value=4e-09 Score=89.71 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=63.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
..+.++|+|||+|.-++.++..+ .+|+|+|+|+.||++|++..... .......+...+..++--.++|.|+|+|...
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~-y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVT-YCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcc-cccCCccccccccccccCCCcceeeehhhhh
Confidence 44589999999998888888884 58999999999999998765433 1122233443444444224789999999999
Q ss_pred hhhCCChhh
Q 048398 265 VCLLSNSEH 273 (280)
Q Consensus 265 lh~l~d~~~ 273 (280)
+|+++-+.-
T Consensus 110 ~HWFdle~f 118 (261)
T KOG3010|consen 110 VHWFDLERF 118 (261)
T ss_pred HHhhchHHH
Confidence 999987554
No 134
>PRK04266 fibrillarin; Provisional
Probab=98.85 E-value=1.4e-08 Score=87.59 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=59.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC----CCCCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS----GLPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~----~~~~~sfDlVi 260 (280)
++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.+++... .++.++.+|+... +++ .+||+|+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~-~~~D~i~ 146 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVV-EKVDVIY 146 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcc-ccCCEEE
Confidence 667999999999999999999876669999999999999888776532 5789999998752 233 4699998
Q ss_pred ec
Q 048398 261 LS 262 (280)
Q Consensus 261 ~~ 262 (280)
+.
T Consensus 147 ~d 148 (226)
T PRK04266 147 QD 148 (226)
T ss_pred EC
Confidence 54
No 135
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.85 E-value=1.3e-08 Score=91.19 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=81.8
Q ss_pred hhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCe
Q 048398 160 VDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPI 239 (280)
Q Consensus 160 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v 239 (280)
+...+..++..+...+.+....+. .....+|+|.|.|..+..+...||..+.+-.|+ |..++.| .+.. . .|
T Consensus 153 ~~~sm~~l~~~~~~~il~~~~Gf~-~v~~avDvGgGiG~v~k~ll~~fp~ik~infdl-p~v~~~a-~~~~-~-----gV 223 (342)
T KOG3178|consen 153 FNGSMSFLSTLVMKKILEVYTGFK-GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDL-PFVLAAA-PYLA-P-----GV 223 (342)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccc-cCceEEEcCCcHhHHHHHHHHhCCCCceeecCH-HHHHhhh-hhhc-C-----Cc
Confidence 555566666666655555554443 578999999999999999999988766665555 4444444 4432 2 38
Q ss_pred EEEEeCCCCCCCCCCceeeEEechhhhhCCChhhhhhhhcC
Q 048398 240 SWVHAIGEDSGLPSKSFDVVSLSYVVCLLSNSEHLSVERCL 280 (280)
Q Consensus 240 ~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d~~~~~~l~~l 280 (280)
+.+.+|.... .|.+ |+|++.+++|||.|++.+.+|+||
T Consensus 224 ~~v~gdmfq~-~P~~--daI~mkWiLhdwtDedcvkiLknC 261 (342)
T KOG3178|consen 224 EHVAGDMFQD-TPKG--DAIWMKWILHDWTDEDCVKILKNC 261 (342)
T ss_pred ceeccccccc-CCCc--CeEEEEeecccCChHHHHHHHHHH
Confidence 8899998887 7765 899999999999999999999875
No 136
>PRK00811 spermidine synthase; Provisional
Probab=98.84 E-value=1.1e-08 Score=91.25 Aligned_cols=80 Identities=16% Similarity=0.144 Sum_probs=64.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC-C--CCCCeEEEEeCCCCC-CCCCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG-P--RKNPISWVHAIGEDS-GLPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~-~--~~~~v~~~~~d~~~~-~~~~~sfDlVi 260 (280)
++++||+||||.|..+..+.+..+..+|+++|+++.+++.|++.+.... + ..++++++.+|+... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 6889999999999999999886556799999999999999999886421 1 246899999998764 12356899999
Q ss_pred echh
Q 048398 261 LSYV 264 (280)
Q Consensus 261 ~~~v 264 (280)
+...
T Consensus 156 ~D~~ 159 (283)
T PRK00811 156 VDST 159 (283)
T ss_pred ECCC
Confidence 8654
No 137
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.83 E-value=1.5e-08 Score=86.38 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=67.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEE-eCCCCCC--CCCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVH-AIGEDSG--LPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~-~d~~~~~--~~~~sfDlVi 260 (280)
++++||+||++.|..++.++...| ..+++.+|++|++.+.|++++++. +..++|.++. +|..+.- ...++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-g~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-GVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-CCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 889999999999999999999998 779999999999999999999998 6777799988 4765431 2358999999
Q ss_pred ech
Q 048398 261 LSY 263 (280)
Q Consensus 261 ~~~ 263 (280)
.-.
T Consensus 138 IDa 140 (219)
T COG4122 138 IDA 140 (219)
T ss_pred EeC
Confidence 754
No 138
>PLN02476 O-methyltransferase
Probab=98.83 E-value=1.6e-08 Score=89.34 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=66.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-C-C----CCCcee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-G-L----PSKSFD 257 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~-~----~~~sfD 257 (280)
++++|||||||+|..++.++...| +.+|+.+|.++...+.|+++++.. +..++|+++.+|+.+. + + ..++||
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-GVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 789999999999999999998764 568999999999999999999988 6778999999998653 1 1 135799
Q ss_pred eEEech
Q 048398 258 VVSLSY 263 (280)
Q Consensus 258 lVi~~~ 263 (280)
+|++-.
T Consensus 197 ~VFIDa 202 (278)
T PLN02476 197 FAFVDA 202 (278)
T ss_pred EEEECC
Confidence 999754
No 139
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.82 E-value=1.4e-08 Score=93.59 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=70.6
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 048398 156 YASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPR 235 (280)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~ 235 (280)
....|.+.+......+.+.+.+.+.. ...+|||++||+|.+++.+++. ..+|+|+|+++.+++.|++|+..+ .
T Consensus 180 ~~~sF~Q~N~~~~e~l~~~v~~~~~~---~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~--~ 252 (362)
T PRK05031 180 VENSFTQPNAAVNEKMLEWALDATKG---SKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAAN--G 252 (362)
T ss_pred CCCCeeccCHHHHHHHHHHHHHHhhc---CCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHh--C
Confidence 45568888888888877777665531 2357999999999999999987 458999999999999999999887 3
Q ss_pred CCCeEEEEeCCCC
Q 048398 236 KNPISWVHAIGED 248 (280)
Q Consensus 236 ~~~v~~~~~d~~~ 248 (280)
..+++|+.+|+.+
T Consensus 253 ~~~v~~~~~d~~~ 265 (362)
T PRK05031 253 IDNVQIIRMSAEE 265 (362)
T ss_pred CCcEEEEECCHHH
Confidence 4689999999866
No 140
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=2.3e-08 Score=94.21 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=64.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~sfDlVi~~ 262 (280)
++.+|||+|||+|..+..+++..++.+|+++|+++.+++.+++++... +. +++++++|+.+.+ ++.++||+|++.
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-GL--KATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-CC--CeEEEEcCcccchhhcccCCCCEEEEC
Confidence 677999999999999999999887689999999999999999999877 22 4789999998753 345689999953
No 141
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.77 E-value=3.3e-08 Score=83.38 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=64.6
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-C--CCCCceeeEEec
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-G--LPSKSFDVVSLS 262 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~sfDlVi~~ 262 (280)
...+||||||.|.++..+++.+|+..++|+|+....+..+..++... ...|+.++++|+... . ++++++|-|+.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~--~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR--GLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH--TTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh--cccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 33899999999999999999999999999999999999999998876 578999999999873 1 467899999987
Q ss_pred hhhhhC
Q 048398 263 YVVCLL 268 (280)
Q Consensus 263 ~vlh~l 268 (280)
+-=.+.
T Consensus 96 FPDPWp 101 (195)
T PF02390_consen 96 FPDPWP 101 (195)
T ss_dssp S-----
T ss_pred CCCCCc
Confidence 755443
No 142
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.77 E-value=2.7e-08 Score=92.62 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=62.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-CCeEEEEeCCCCCC--C--CCCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRK-NPISWVHAIGEDSG--L--PSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~-~~v~~~~~d~~~~~--~--~~~sfDlV 259 (280)
++++|||+|||+|.+++.++.. ...+|+++|+|+.+++.|++|+..+ +.. .+++++++|+.+.- + ..++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~N-gl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELN-KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc-CCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 6789999999999998877654 2459999999999999999999988 443 47999999987641 1 24579999
Q ss_pred Eec
Q 048398 260 SLS 262 (280)
Q Consensus 260 i~~ 262 (280)
+++
T Consensus 298 ilD 300 (396)
T PRK15128 298 VMD 300 (396)
T ss_pred EEC
Confidence 987
No 143
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.76 E-value=2.6e-08 Score=91.54 Aligned_cols=87 Identities=17% Similarity=0.209 Sum_probs=67.9
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 048398 156 YASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPR 235 (280)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~ 235 (280)
....|.+.+......+.+.+.+.... .+.+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|+..+ .
T Consensus 171 ~~~~F~Q~N~~~~~~l~~~v~~~~~~---~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~--~ 243 (353)
T TIGR02143 171 VENSFTQPNAAVNIKMLEWACEVTQG---SKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAAN--N 243 (353)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhc---CCCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc--C
Confidence 34456666666666666665555421 23479999999999999999884 58999999999999999999888 3
Q ss_pred CCCeEEEEeCCCCC
Q 048398 236 KNPISWVHAIGEDS 249 (280)
Q Consensus 236 ~~~v~~~~~d~~~~ 249 (280)
..+++|+.+|+++.
T Consensus 244 ~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 244 IDNVQIIRMSAEEF 257 (353)
T ss_pred CCcEEEEEcCHHHH
Confidence 46799999998763
No 144
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.75 E-value=4.8e-08 Score=85.74 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=60.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcee---eEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFD---VVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfD---lVi~ 261 (280)
++.+|||||||+|.++..+++.+ .+++++|+++.+++.++.++.. ..+++++++|+...+++ .|| +|++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~--~~d~~~~vvs 100 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP--DFPKQLKVVS 100 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh--HcCCcceEEE
Confidence 67799999999999999999985 4699999999999999987642 35799999999998765 466 6666
Q ss_pred chh
Q 048398 262 SYV 264 (280)
Q Consensus 262 ~~v 264 (280)
+.-
T Consensus 101 NlP 103 (253)
T TIGR00755 101 NLP 103 (253)
T ss_pred cCC
Confidence 654
No 145
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=4.3e-08 Score=92.84 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=64.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~sfDlVi~ 261 (280)
++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++... +..+++++++|+.+.. ++ ++||+|++
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--GLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 56789999999999999999876 5679999999999999999999887 3346999999998753 33 67999997
Q ss_pred c
Q 048398 262 S 262 (280)
Q Consensus 262 ~ 262 (280)
.
T Consensus 327 D 327 (444)
T PRK14902 327 D 327 (444)
T ss_pred c
Confidence 5
No 146
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.73 E-value=3e-08 Score=98.81 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=63.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC-CCeEEEEeCCCCCC-CCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRK-NPISWVHAIGEDSG-LPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~sfDlVi~~ 262 (280)
++++|||+|||+|.+++.+++.+ ..+|+++|+|+.+++.|++|+..+ +.. .+++++++|+.+.- -..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~n-g~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALN-GLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHh-CCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 67899999999999999999862 347999999999999999999988 443 58999999986631 114579999986
No 147
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.73 E-value=4.1e-08 Score=85.56 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=66.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-C-C-C----CCce
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-G-L-P----SKSF 256 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~-~-~----~~sf 256 (280)
++++||+||+++|..++.++... ++.+++.+|.++...+.|++++... +..++|++++|++.+. + + + .++|
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-g~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-GVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-CCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 78999999999999999999876 4679999999999999999999988 6778999999998664 1 1 1 2589
Q ss_pred eeEEec
Q 048398 257 DVVSLS 262 (280)
Q Consensus 257 DlVi~~ 262 (280)
|+|++-
T Consensus 158 D~iFiD 163 (247)
T PLN02589 158 DFIFVD 163 (247)
T ss_pred cEEEec
Confidence 999875
No 148
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.72 E-value=4.8e-08 Score=86.71 Aligned_cols=87 Identities=22% Similarity=0.269 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC
Q 048398 170 NWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS 249 (280)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~ 249 (280)
.|.+.+.+...++ +++.|||+|||+|++++..++.+ ..+|++++-| +|.+.|++..+.| ...++|.++.|.+++.
T Consensus 164 TY~~Ail~N~sDF--~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N-~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 164 TYQRAILENHSDF--QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASN-NLADRITVIPGKIEDI 238 (517)
T ss_pred HHHHHHHhccccc--CCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcC-CccceEEEccCccccc
Confidence 3455555555555 78999999999999999999985 4589999985 8999999998877 6889999999999999
Q ss_pred CCCCCceeeEEec
Q 048398 250 GLPSKSFDVVSLS 262 (280)
Q Consensus 250 ~~~~~sfDlVi~~ 262 (280)
.+|+ +.|+||+-
T Consensus 239 eLPE-k~DviISE 250 (517)
T KOG1500|consen 239 ELPE-KVDVIISE 250 (517)
T ss_pred cCch-hccEEEec
Confidence 8886 59999863
No 149
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.72 E-value=7.3e-08 Score=91.30 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=63.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~ 261 (280)
++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.+++++... +..+|+++++|+...+ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--GITIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--CCCeEEEEeCcccccc-cCCCCCEEEE
Confidence 567999999999999998887653 469999999999999999999887 3457999999998874 5568999996
No 150
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.72 E-value=4.1e-08 Score=82.20 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=53.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------CCCCc
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------LPSKS 255 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~s 255 (280)
++.+|||+|||+|.++..+++.+ +..+|+|+|+++.+ . ..+++++++|+.+.. ++.++
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P---IENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c---CCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 77899999999999999998876 45689999999854 1 135789999987643 35668
Q ss_pred eeeEEechh
Q 048398 256 FDVVSLSYV 264 (280)
Q Consensus 256 fDlVi~~~v 264 (280)
||+|++...
T Consensus 99 ~D~V~~~~~ 107 (188)
T TIGR00438 99 VDVVMSDAA 107 (188)
T ss_pred ccEEEcCCC
Confidence 999998653
No 151
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.71 E-value=6.7e-08 Score=85.35 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=64.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
++.+|||+|||+|..+..+++... ...|+++|+++.+++.++++++.. +..++.++++|+..++...++||+|++.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--g~~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--GVLNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--CCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence 567899999999999999988763 458999999999999999999887 3457999999988765445679999963
No 152
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.71 E-value=1.1e-07 Score=79.89 Aligned_cols=90 Identities=10% Similarity=-0.041 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeC
Q 048398 166 VMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAI 245 (280)
Q Consensus 166 ~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d 245 (280)
.++..+...+...+ .+.++||++||+|.+++.++.++ ...|+++|.++.+++.+++|++.+ +..++++++.+|
T Consensus 35 ~vrea~f~~l~~~~-----~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~-~~~~~~~~~~~D 107 (189)
T TIGR00095 35 VVRELFFNILRPEI-----QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALL-KSGEQAEVVRNS 107 (189)
T ss_pred HHHHHHHHHHHHhc-----CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHh-CCcccEEEEehh
Confidence 44555554443322 67899999999999999999985 348999999999999999999887 444578999999
Q ss_pred CCCC-C-C-CCC-ceeeEEec
Q 048398 246 GEDS-G-L-PSK-SFDVVSLS 262 (280)
Q Consensus 246 ~~~~-~-~-~~~-sfDlVi~~ 262 (280)
+... . + ... .||+|+..
T Consensus 108 ~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 108 ALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred HHHHHHHhhccCCCceEEEEC
Confidence 8543 1 1 122 37887763
No 153
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=2.5e-08 Score=84.86 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=73.7
Q ss_pred CCcEEEECCCCChhHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC----CCCCCCceeeE
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPS--AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGED----SGLPSKSFDVV 259 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~--~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~----~~~~~~sfDlV 259 (280)
..+||+||||.|.....+.+..|. ..|+++|.||.+++..+++...+ ..++.-.+.|+.. .++..+++|+|
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~---e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD---ESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc---hhhhcccceeccchhccCCCCcCccceE
Confidence 348999999999999999998877 89999999999999999887654 3455555556543 23567899999
Q ss_pred EechhhhhCCChhhhhhhhc
Q 048398 260 SLSYVVCLLSNSEHLSVERC 279 (280)
Q Consensus 260 i~~~vlh~l~d~~~~~~l~~ 279 (280)
++.+||..+++.....++.+
T Consensus 149 t~IFvLSAi~pek~~~a~~n 168 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKN 168 (264)
T ss_pred EEEEEEeccChHHHHHHHHH
Confidence 99999999998877666554
No 154
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.70 E-value=1.5e-08 Score=82.44 Aligned_cols=72 Identities=29% Similarity=0.301 Sum_probs=54.9
Q ss_pred cEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCc-eeeEEec
Q 048398 188 DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKS-FDVVSLS 262 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~s-fDlVi~~ 262 (280)
.|+|+.||.|..++.+++. ..+|+++|++|..++.|+.|++-. |..++|+|+++|+.+.. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vY-Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVY-GVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHT-T-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999998 468999999999999999999988 56789999999987652 22112 8999975
No 155
>PRK01581 speE spermidine synthase; Validated
Probab=98.70 E-value=5.5e-08 Score=88.55 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHH--HH---hcCCCCCCeEEEEeCCCCC-CCCCCceee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLK--EK---KGGPRKNPISWVHAIGEDS-GLPSKSFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~--~~---~~~~~~~~v~~~~~d~~~~-~~~~~sfDl 258 (280)
++++||+||||+|..+..+.+..+..+|+++|+++.+++.|+.. +. ..+-..++++++++|+.+. .-..++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 78899999999999999999865567999999999999999962 11 1101246899999998764 223567999
Q ss_pred EEech
Q 048398 259 VSLSY 263 (280)
Q Consensus 259 Vi~~~ 263 (280)
|++..
T Consensus 230 IIvDl 234 (374)
T PRK01581 230 IIIDF 234 (374)
T ss_pred EEEcC
Confidence 99884
No 156
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.69 E-value=4.1e-08 Score=81.26 Aligned_cols=82 Identities=23% Similarity=0.222 Sum_probs=55.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCCeEEEEeCCCCCC----CCCCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG-PRKNPISWVHAIGEDSG----LPSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~-~~~~~v~~~~~d~~~~~----~~~~sfDlV 259 (280)
++++|||+|||+|..++.++...+..+|+..|.++ .++..+.|++.|+ ....++.+...+..+.. +...+||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 78899999999999999999986678999999988 9999999998871 13567888888875521 234689999
Q ss_pred Eechhhhh
Q 048398 260 SLSYVVCL 267 (280)
Q Consensus 260 i~~~vlh~ 267 (280)
++..++..
T Consensus 124 lasDv~Y~ 131 (173)
T PF10294_consen 124 LASDVLYD 131 (173)
T ss_dssp EEES--S-
T ss_pred EEecccch
Confidence 99999875
No 157
>PLN02366 spermidine synthase
Probab=98.69 E-value=7.5e-08 Score=86.67 Aligned_cols=81 Identities=10% Similarity=0.106 Sum_probs=63.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC-C-CCCCeEEEEeCCCCC--CCCCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG-P-RKNPISWVHAIGEDS--GLPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~-~-~~~~v~~~~~d~~~~--~~~~~sfDlVi 260 (280)
++++||+||||.|..+..+++..+..+|+.+|+++.+++.|++.+...+ + ..++++++.+|+... ..++++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 7899999999999999999876444689999999999999999875421 1 245899999997543 12356899999
Q ss_pred echhh
Q 048398 261 LSYVV 265 (280)
Q Consensus 261 ~~~vl 265 (280)
+...-
T Consensus 171 ~D~~d 175 (308)
T PLN02366 171 VDSSD 175 (308)
T ss_pred EcCCC
Confidence 86533
No 158
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=8.7e-08 Score=90.35 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=64.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-CCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-LPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~sfDlVi~~ 262 (280)
++.+|||+|||+|..+..+++.. ++.+|+++|+++.+++.+++++... +..+++++++|+..++ ...++||.|++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--KLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--CCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 66799999999999999999875 4679999999999999999999887 3456899999998765 335689999973
No 159
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=6.6e-08 Score=90.69 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=82.2
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 048398 156 YASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPR 235 (280)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~ 235 (280)
....|.+.+......+.....+.+... +..++||+-||.|.+++.+++. ..+|+|+|+++.+++.|++|++.| .
T Consensus 266 ~~~sF~Q~N~~~~ekl~~~a~~~~~~~--~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n--~ 339 (432)
T COG2265 266 SPRSFFQVNPAVAEKLYETALEWLELA--GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAAN--G 339 (432)
T ss_pred CCCCceecCHHHHHHHHHHHHHHHhhc--CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHc--C
Confidence 444788888888888777777776432 5678999999999999999977 789999999999999999999999 5
Q ss_pred CCCeEEEEeCCCCCCCC---CCceeeEEe
Q 048398 236 KNPISWVHAIGEDSGLP---SKSFDVVSL 261 (280)
Q Consensus 236 ~~~v~~~~~d~~~~~~~---~~sfDlVi~ 261 (280)
..|++|+.++.++.... ...+|.|+.
T Consensus 340 i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 340 IDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred CCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 66799999999886432 246899886
No 160
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.66 E-value=8.9e-08 Score=90.26 Aligned_cols=85 Identities=20% Similarity=0.147 Sum_probs=66.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC--CCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL--PSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~sfDlVi~~ 262 (280)
++.+|||+|||+|..+..+++..+..+|+|+|+++.+++.++++++.. +...++.+..+|....+. +.++||.|++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-GLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEeccccccccccccccccCEEEEc
Confidence 668999999999999999999877789999999999999999999887 333234446677665433 45789999963
Q ss_pred ------hhhhhCCC
Q 048398 263 ------YVVCLLSN 270 (280)
Q Consensus 263 ------~vlh~l~d 270 (280)
.++++.|+
T Consensus 317 aPcSg~G~~~~~p~ 330 (426)
T TIGR00563 317 APCSATGVIRRHPD 330 (426)
T ss_pred CCCCCCcccccCcc
Confidence 45666554
No 161
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.66 E-value=1.1e-07 Score=87.34 Aligned_cols=87 Identities=21% Similarity=0.230 Sum_probs=65.0
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 048398 156 YASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPR 235 (280)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~ 235 (280)
....|.+.+......+.+.+.+.+.. ...+|||+-||+|.+++.+++. ..+|+|+|+++.+++.|++|+..| .
T Consensus 170 ~~~sFfQvN~~~~~~l~~~~~~~l~~---~~~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N--~ 242 (352)
T PF05958_consen 170 SPGSFFQVNPEQNEKLYEQALEWLDL---SKGDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLN--G 242 (352)
T ss_dssp ETTS---SBHHHHHHHHHHHHHHCTT----TTEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHT--T
T ss_pred CCCcCccCcHHHHHHHHHHHHHHhhc---CCCcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHc--C
Confidence 44568888888888888877777643 2338999999999999999988 679999999999999999999998 5
Q ss_pred CCCeEEEEeCCCCC
Q 048398 236 KNPISWVHAIGEDS 249 (280)
Q Consensus 236 ~~~v~~~~~d~~~~ 249 (280)
..+++|+.++.++.
T Consensus 243 i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 243 IDNVEFIRGDAEDF 256 (352)
T ss_dssp --SEEEEE--SHHC
T ss_pred CCcceEEEeeccch
Confidence 68999999887553
No 162
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.66 E-value=9.9e-08 Score=90.13 Aligned_cols=84 Identities=18% Similarity=0.063 Sum_probs=68.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----CCCCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----LPSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~sfDlV 259 (280)
++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++... +..+|+++++|+...+ ...++||.|
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--GLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--CCCeEEEEeCChhhcccccccccccCCEE
Confidence 56799999999999999999875 3469999999999999999999887 3457999999998765 335689999
Q ss_pred Eec------hhhhhCCC
Q 048398 260 SLS------YVVCLLSN 270 (280)
Q Consensus 260 i~~------~vlh~l~d 270 (280)
++. .++++-|+
T Consensus 330 l~DaPCSg~G~~~r~p~ 346 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPD 346 (434)
T ss_pred EEeCCCCcccccccCcc
Confidence 974 35555454
No 163
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.66 E-value=9.1e-08 Score=79.62 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=64.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCe---------EEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCc
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAK---------VTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKS 255 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~---------v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~s 255 (280)
+...|||--||+|.+.+..+...+... ++|+|+++.+++.|+.|+... +....+.+.++|+.++++.+++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-g~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-GVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-T-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-ccCCceEEEecchhhcccccCC
Confidence 567999999999999998877765555 999999999999999999887 5667899999999999877789
Q ss_pred eeeEEechhh
Q 048398 256 FDVVSLSYVV 265 (280)
Q Consensus 256 fDlVi~~~vl 265 (280)
+|+|+++--.
T Consensus 107 ~d~IvtnPPy 116 (179)
T PF01170_consen 107 VDAIVTNPPY 116 (179)
T ss_dssp SCEEEEE--S
T ss_pred CCEEEECcch
Confidence 9999998543
No 164
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.64 E-value=1.4e-07 Score=79.62 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=61.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.+|+|+.||.|.+++.+++..+..+|+++|++|++++..+++++.| +..+++..+++|+.++.. .+.||-|+++..
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN-kv~~~i~~~~~D~~~~~~-~~~~drvim~lp 178 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN-KVENRIEVINGDAREFLP-EGKFDRVIMNLP 178 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEES-GGG----TT-EEEEEE--T
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc-CCCCeEEEEcCCHHHhcC-ccccCEEEECCh
Confidence 678999999999999999999766889999999999999999999999 677889999999988743 778999998764
No 165
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.63 E-value=8.6e-08 Score=85.53 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=68.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCC--ceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSK--SFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~--sfDlV 259 (280)
++..++|.+||.|..+..+++.+| ..+|+|+|.+|.+++.|++++.. .++++++++|+.++. ++.+ ++|.|
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNFSNLKEVLAEGLGKVDGI 94 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence 567999999999999999999985 68999999999999999988753 358999999998753 2222 79999
Q ss_pred Eechhh--hhCCChhh
Q 048398 260 SLSYVV--CLLSNSEH 273 (280)
Q Consensus 260 i~~~vl--h~l~d~~~ 273 (280)
++...+ ++++++++
T Consensus 95 l~DLGvSs~Qld~~~R 110 (296)
T PRK00050 95 LLDLGVSSPQLDDAER 110 (296)
T ss_pred EECCCccccccCCCcC
Confidence 988665 45555544
No 166
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.63 E-value=1.2e-07 Score=84.08 Aligned_cols=91 Identities=26% Similarity=0.390 Sum_probs=65.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCC-CCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSA-KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGE-DSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~-~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~-~~~~~~~sfDlVi~~ 262 (280)
.+.+|||+|||.|..+.++.+.++.. +++++|.|+.|++.++..+... .......+...... ..++. +.|+|++.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-PNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-cccccchhhhhhhcccccCC--CCcEEEEe
Confidence 78899999999999999888888743 7999999999999999877654 11111112111111 12222 34999999
Q ss_pred hhhhhCCChhhhhhhh
Q 048398 263 YVVCLLSNSEHLSVER 278 (280)
Q Consensus 263 ~vlh~l~d~~~~~~l~ 278 (280)
++|.++++..+..+++
T Consensus 110 ~~L~EL~~~~r~~lv~ 125 (274)
T PF09243_consen 110 YVLNELPSAARAELVR 125 (274)
T ss_pred hhhhcCCchHHHHHHH
Confidence 9999999966655544
No 167
>PRK04148 hypothetical protein; Provisional
Probab=98.63 E-value=2.2e-07 Score=73.06 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=59.1
Q ss_pred CCCcEEEECCCCCh-hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC-CCceeeEEec
Q 048398 185 EIRDILDIGCSVGV-STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP-SKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~-~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~sfDlVi~~ 262 (280)
+..+|||||||+|. .+..|++. +.+|+++|++|..++.++++ .++++.+|+.+.++. -+.+|+|++.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIYKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHHhcCCEEEEe
Confidence 55789999999996 88888877 78999999999988887655 367899999886653 3458999987
Q ss_pred hhhhhCC
Q 048398 263 YVVCLLS 269 (280)
Q Consensus 263 ~vlh~l~ 269 (280)
.--.++.
T Consensus 85 rpp~el~ 91 (134)
T PRK04148 85 RPPRDLQ 91 (134)
T ss_pred CCCHHHH
Confidence 6544443
No 168
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.62 E-value=1.3e-07 Score=81.16 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=68.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC----------CCCCCeEEEEeCCCCCCCCC-
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG----------PRKNPISWVHAIGEDSGLPS- 253 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~----------~~~~~v~~~~~d~~~~~~~~- 253 (280)
...+||..|||.|.-+..|++. +.+|+|+|+|+.+++.+.+.....+ ...++|++.++|+.+++...
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 5669999999999999999998 7899999999999999854322100 02357899999999975432
Q ss_pred CceeeEEechhhhhCCChhhh
Q 048398 254 KSFDVVSLSYVVCLLSNSEHL 274 (280)
Q Consensus 254 ~sfDlVi~~~vlh~l~d~~~~ 274 (280)
++||+|+=...|+-+|+..+.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~ 135 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRE 135 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHH
T ss_pred CCceEEEEecccccCCHHHHH
Confidence 579999999999999987764
No 169
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.61 E-value=1.5e-07 Score=85.53 Aligned_cols=85 Identities=20% Similarity=0.202 Sum_probs=58.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC--------CCCCCeEEEEeCCCCCC----CC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG--------PRKNPISWVHAIGEDSG----LP 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~--------~~~~~v~~~~~d~~~~~----~~ 252 (280)
+..+|||+|||.|.-+....+.. -..++|+||+...|+.|+++..... ...-...|+.+|..... ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 56799999999999888877763 4689999999999999999883210 01124577888876432 33
Q ss_pred C--CceeeEEechhhhhCCC
Q 048398 253 S--KSFDVVSLSYVVCLLSN 270 (280)
Q Consensus 253 ~--~sfDlVi~~~vlh~l~d 270 (280)
+ .+||+|.|.+.|||.=.
T Consensus 141 ~~~~~FDvVScQFalHY~Fe 160 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFE 160 (331)
T ss_dssp STTS-EEEEEEES-GGGGGS
T ss_pred ccCCCcceeehHHHHHHhcC
Confidence 3 58999999999998654
No 170
>PTZ00146 fibrillarin; Provisional
Probab=98.61 E-value=2.9e-07 Score=81.72 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=58.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC---CCCCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS---GLPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~sfDlVi 260 (280)
+..+|||+|||+|.++..+++.. +..+|+++|+++.+++.....+.. ..+|.++.+|+... ..+..+||+|+
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~----r~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK----RPNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh----cCCCEEEECCccChhhhhcccCCCCEEE
Confidence 66799999999999999999986 346899999999866555444332 24789999998642 22345799999
Q ss_pred echh
Q 048398 261 LSYV 264 (280)
Q Consensus 261 ~~~v 264 (280)
+...
T Consensus 208 ~Dva 211 (293)
T PTZ00146 208 ADVA 211 (293)
T ss_pred EeCC
Confidence 9874
No 171
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.7e-07 Score=75.36 Aligned_cols=75 Identities=25% Similarity=0.298 Sum_probs=63.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
.+..++|||||+|..+..+++.. |.+-..++|++|.+++..++.+..| ..+++.+++|+..- +..++.|+++.+=
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n---~~~~~~V~tdl~~~-l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN---RVHIDVVRTDLLSG-LRNESVDVLVFNP 118 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc---CCccceeehhHHhh-hccCCccEEEECC
Confidence 57889999999999888887664 7788999999999999999999887 44688899998775 5458899999874
No 172
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.60 E-value=7.9e-08 Score=81.27 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=66.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
...+.||.|+|.|..+..+.-.. -.+|-.+|..+.+++.|++.+... .....++.+..++++..+.++||+|.+.++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~--~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD--NPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG--GCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc--CCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 56799999999999998776443 458999999999999999887553 223457777888877444578999999999
Q ss_pred hhhCCChhhhhhhhcC
Q 048398 265 VCLLSNSEHLSVERCL 280 (280)
Q Consensus 265 lh~l~d~~~~~~l~~l 280 (280)
+.|+.|.+-+..|++|
T Consensus 132 lghLTD~dlv~fL~RC 147 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRC 147 (218)
T ss_dssp GGGS-HHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHH
Confidence 9999999988877653
No 173
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.58 E-value=2.3e-07 Score=82.18 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=62.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCCeEEEEeCCCCC-CCCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGP--RKNPISWVHAIGEDS-GLPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~--~~~~v~~~~~d~~~~-~~~~~sfDlVi~ 261 (280)
++++||+||||+|..+..+.+..+..+++++|+++.+++.|++++....+ ...+++++.+|+... .-..++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 67799999999999999998876567999999999999999998754311 135788998887552 112468999998
Q ss_pred chh
Q 048398 262 SYV 264 (280)
Q Consensus 262 ~~v 264 (280)
...
T Consensus 152 D~~ 154 (270)
T TIGR00417 152 DST 154 (270)
T ss_pred eCC
Confidence 754
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.56 E-value=5.9e-07 Score=84.84 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=58.7
Q ss_pred CCcEEEECCCCChhHHHHHhhC----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEe
Q 048398 186 IRDILDIGCSVGVSTKCLADKF----PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSL 261 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~----p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~ 261 (280)
.+.|+|||||+|.++...++.. ...+|++++-+|.++...++.+..+ +..++|+++++|.++...|. ++|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-GWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-TTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-CCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 5789999999999988776653 2369999999999888877776666 56789999999999997765 7999997
Q ss_pred c
Q 048398 262 S 262 (280)
Q Consensus 262 ~ 262 (280)
=
T Consensus 265 E 265 (448)
T PF05185_consen 265 E 265 (448)
T ss_dssp -
T ss_pred e
Confidence 4
No 175
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.55 E-value=1.9e-07 Score=76.32 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=51.4
Q ss_pred EEEeCCHHHHHHHHHHHHhcC-CCCCCeEEEEeCCCCCCCCCCceeeEEechhhhhCCChhh
Q 048398 213 TGLDLSPYFLAVAQLKEKKGG-PRKNPISWVHAIGEDSGLPSKSFDVVSLSYVVCLLSNSEH 273 (280)
Q Consensus 213 ~gvDisp~~l~~A~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d~~~ 273 (280)
+|+|+|+.|++.|+++..... +...+++|+++|++++|+++++||+|++.+++|+++|...
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~ 62 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLR 62 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHH
Confidence 589999999999987765320 1235799999999999999999999999999999988765
No 176
>PRK03612 spermidine synthase; Provisional
Probab=98.53 E-value=2e-07 Score=89.98 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=62.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHH--Hh-cC--CCCCCeEEEEeCCCCC-CCCCCceee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKE--KK-GG--PRKNPISWVHAIGEDS-GLPSKSFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~--~~-~~--~~~~~v~~~~~d~~~~-~~~~~sfDl 258 (280)
++++|||||||+|..+..+.+..+..+++++|++|.+++.|+++. .. +. -..++++++++|+.+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 678999999999999999987532379999999999999999842 21 10 0135899999998763 122468999
Q ss_pred EEechhh
Q 048398 259 VSLSYVV 265 (280)
Q Consensus 259 Vi~~~vl 265 (280)
|++...-
T Consensus 377 Ii~D~~~ 383 (521)
T PRK03612 377 IIVDLPD 383 (521)
T ss_pred EEEeCCC
Confidence 9998543
No 177
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.53 E-value=2.6e-07 Score=85.60 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=62.3
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC-CCceeeEEec
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP-SKSFDVVSLS 262 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~sfDlVi~~ 262 (280)
..+|||++||+|..++.++...+..+|+++|+++.+++.+++|++.| ...++++.++|+..+ +. .++||+|++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N--~~~~~~v~~~Da~~~-l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN--GLENEKVFNKDANAL-LHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--CCCceEEEhhhHHHH-HhhcCCCCEEEEC
Confidence 35899999999999999988765568999999999999999999988 345678999998764 22 4569999986
No 178
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.51 E-value=8.6e-07 Score=74.55 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCC-cEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCe-EEEEe
Q 048398 167 MRGNWLQAIEKHHQQYAGEIR-DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPI-SWVHA 244 (280)
Q Consensus 167 l~~~~~~~l~~~~~~~~~~~~-~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v-~~~~~ 244 (280)
-+..+++.|.+.+. ... +|||||||||..+..+++.+|..+..-.|+++..+...+...... ...|+ .-+..
T Consensus 10 Nk~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~--~~~Nv~~P~~l 83 (204)
T PF06080_consen 10 NKDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA--GLPNVRPPLAL 83 (204)
T ss_pred CHhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc--CCcccCCCeEe
Confidence 34455555555543 344 599999999999999999999999999999999876666665554 12222 23445
Q ss_pred CCCCCC--C------CCCceeeEEechhhhhCCChhhhhh
Q 048398 245 IGEDSG--L------PSKSFDVVSLSYVVCLLSNSEHLSV 276 (280)
Q Consensus 245 d~~~~~--~------~~~sfDlVi~~~vlh~l~d~~~~~~ 276 (280)
|+...+ . ..++||.|+|.+++|-.+-......
T Consensus 84 Dv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~l 123 (204)
T PF06080_consen 84 DVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGL 123 (204)
T ss_pred ecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHH
Confidence 554432 2 2458999999999988876555433
No 179
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.50 E-value=4.8e-07 Score=78.39 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=66.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+...||+||.|||.++..+.+. +++|++++++|.|++...++...- ....+.++++||+..+++| -||+++++.-
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gt-p~~~kLqV~~gD~lK~d~P--~fd~cVsNlP 132 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGT-PKSGKLQVLHGDFLKTDLP--RFDGCVSNLP 132 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCC-CccceeeEEecccccCCCc--ccceeeccCC
Confidence 6789999999999999999999 899999999999999999988654 3457899999999998876 4899998643
No 180
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.47 E-value=4.6e-07 Score=80.23 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=66.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCC----CeEEEEeCCCCC------CCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKN----PISWVHAIGEDS------GLPSK 254 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~----~v~~~~~d~~~~------~~~~~ 254 (280)
+...++|+|||.|.-++..-+.. -..++|+||+...|+.|+++..+...... .+.|+.||.... ++++-
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 67889999999999888877763 35899999999999999998765421222 368999997542 23344
Q ss_pred ceeeEEechhhhhC-CChhh
Q 048398 255 SFDVVSLSYVVCLL-SNSEH 273 (280)
Q Consensus 255 sfDlVi~~~vlh~l-~d~~~ 273 (280)
+||+|.|.+++|+- ...++
T Consensus 196 ~fDivScQF~~HYaFetee~ 215 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEES 215 (389)
T ss_pred CcceeeeeeeEeeeeccHHH
Confidence 49999999999974 34444
No 181
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.3e-06 Score=76.17 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=63.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCC-ceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSK-SFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-sfDlVi~~~ 263 (280)
+..+|||||+|.|.+|..|++. +.+|+++++++.+++..++.+.. .++++++++|+...+++.- .++.|++|.
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi~~DaLk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP----YDNLTVINGDALKFDFPSLAQPYKVVANL 103 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc----ccceEEEeCchhcCcchhhcCCCEEEEcC
Confidence 5689999999999999999999 78899999999999999988752 4689999999999988752 478888764
No 182
>PLN02823 spermine synthase
Probab=98.40 E-value=1.2e-06 Score=79.76 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=64.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCCeEEEEeCCCCC-CCCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGP--RKNPISWVHAIGEDS-GLPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~--~~~~v~~~~~d~~~~-~~~~~sfDlVi~ 261 (280)
++++||.||+|.|..+..+.+..+..+|+.+|+++.+++.|++.+..+++ ..++++++.+|+... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 67899999999999999998876667999999999999999998864311 246899999998764 223568999998
Q ss_pred c
Q 048398 262 S 262 (280)
Q Consensus 262 ~ 262 (280)
-
T Consensus 183 D 183 (336)
T PLN02823 183 D 183 (336)
T ss_pred c
Confidence 6
No 183
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.39 E-value=1.9e-06 Score=75.12 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=62.4
Q ss_pred CCCcEEEECCCCChhHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC---CCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADK-FPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP---SKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~-~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~sfDlVi 260 (280)
++.+|||.|+|+|.++..|++. .|..+|+.+|+.+...+.|+++++.. +..++|++.+.|+.+..++ ++.||.|+
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-gl~~~v~~~~~Dv~~~g~~~~~~~~~Davf 118 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-GLDDNVTVHHRDVCEEGFDEELESDFDAVF 118 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-TCCTTEEEEES-GGCG--STT-TTSEEEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-CCCCCceeEecceecccccccccCcccEEE
Confidence 7899999999999999999975 47889999999999999999999998 6778999999999654453 35799998
Q ss_pred ec
Q 048398 261 LS 262 (280)
Q Consensus 261 ~~ 262 (280)
+-
T Consensus 119 LD 120 (247)
T PF08704_consen 119 LD 120 (247)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 184
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=5.9e-07 Score=76.07 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=68.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
....++|||||.|.....+.... -.+++-+|.|-.|++.++..-. + .-.+....+|-+.+++.+++||+|+++..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qd-p---~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQD-P---SIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCC-C---ceEEEEEecchhcccccccchhhhhhhhh
Confidence 45689999999999999998874 4589999999999999876532 1 22456788999999999999999999999
Q ss_pred hhhCCCh
Q 048398 265 VCLLSNS 271 (280)
Q Consensus 265 lh~l~d~ 271 (280)
+|++.|.
T Consensus 147 lHW~NdL 153 (325)
T KOG2940|consen 147 LHWTNDL 153 (325)
T ss_pred hhhhccC
Confidence 9998874
No 185
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.39 E-value=8.2e-07 Score=76.41 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=67.5
Q ss_pred CcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC---CCCCCceeeEEech
Q 048398 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS---GLPSKSFDVVSLSY 263 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~sfDlVi~~~ 263 (280)
..+||||||.|.+...+++..|...++|+|+....+..|...+.+. ...|+.++++|+..+ -+++++.|-|+.++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~--~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL--GLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 5899999999999999999999999999999999999999999877 334999999998653 14566999999887
Q ss_pred hhhh
Q 048398 264 VVCL 267 (280)
Q Consensus 264 vlh~ 267 (280)
-=.+
T Consensus 128 PDPW 131 (227)
T COG0220 128 PDPW 131 (227)
T ss_pred CCCC
Confidence 5433
No 186
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.38 E-value=8.9e-07 Score=76.31 Aligned_cols=73 Identities=25% Similarity=0.253 Sum_probs=49.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCe-EEEEeCCC-----CCCCCCCceee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPI-SWVHAIGE-----DSGLPSKSFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v-~~~~~d~~-----~~~~~~~sfDl 258 (280)
+.++|||+|||+|.++..+++.+ ..+|+|+|+++.|+... +..+ .++ .+...|+. +.+..-..+|+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~---l~~~----~~v~~~~~~ni~~~~~~~~~~d~~~~Dv 146 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEK---LRQD----ERVKVLERTNIRYVTPADIFPDFATFDV 146 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHH---HhcC----CCeeEeecCCcccCCHhHcCCCceeeeE
Confidence 67799999999999999999973 46899999999888752 2221 121 12222332 23222247999
Q ss_pred EEechhh
Q 048398 259 VSLSYVV 265 (280)
Q Consensus 259 Vi~~~vl 265 (280)
++++..+
T Consensus 147 sfiS~~~ 153 (228)
T TIGR00478 147 SFISLIS 153 (228)
T ss_pred EEeehHh
Confidence 9988665
No 187
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.5e-06 Score=74.87 Aligned_cols=76 Identities=18% Similarity=0.122 Sum_probs=67.0
Q ss_pred CCCcEEEECCCCChhHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADK-FPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~-~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
++.+|+|.|+|+|.++..|+.. .|..+|+.+|+-+...+.|++|+... +..+++++..+|+.+.-.++ .||.|++-
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~l~d~v~~~~~Dv~~~~~~~-~vDav~LD 170 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-GLGDRVTLKLGDVREGIDEE-DVDAVFLD 170 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-ccccceEEEecccccccccc-ccCEEEEc
Confidence 7889999999999999999975 46789999999999999999999987 56677999999998875555 79999874
No 188
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.31 E-value=2.7e-06 Score=67.62 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=51.3
Q ss_pred cEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC
Q 048398 188 DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGED 248 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~ 248 (280)
+|||+|||.|.++..+++.+|..+++++|++|.+.+.+++++..+ ...++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n--~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN--NLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc--CCCcEEEEEeeeeC
Confidence 489999999999999999988889999999999999999999877 23468887776654
No 189
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.29 E-value=1.6e-05 Score=69.93 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=75.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-CC--CCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS--AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-LP--SKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~--~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~sfDlV 259 (280)
.+-+||||.||.|...+.+...+|. ..|...|.||..++..++.+++. +..+-++|.++|+.+.. +. +-..+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~-gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER-GLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc-CCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 7889999999999999999999887 68999999999999999999988 55555699999998742 11 2246999
Q ss_pred EechhhhhCCChhhh
Q 048398 260 SLSYVVCLLSNSEHL 274 (280)
Q Consensus 260 i~~~vlh~l~d~~~~ 274 (280)
+.+.+++.++|.+-+
T Consensus 214 iVsGL~ElF~Dn~lv 228 (311)
T PF12147_consen 214 IVSGLYELFPDNDLV 228 (311)
T ss_pred EEecchhhCCcHHHH
Confidence 999999999997654
No 190
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.28 E-value=2.1e-06 Score=71.69 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHH-hhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEE
Q 048398 164 NDVMRGNWLQAIEKH-HQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWV 242 (280)
Q Consensus 164 ~~~l~~~~~~~l~~~-~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~ 242 (280)
.+.++......|... + .+.++||+-||+|.+++.+..++ ..+|+.+|.++..++..++|++.. +...+++.+
T Consensus 25 ~drvrealFniL~~~~~-----~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l-~~~~~~~v~ 97 (183)
T PF03602_consen 25 TDRVREALFNILQPRNL-----EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKL-GLEDKIRVI 97 (183)
T ss_dssp SHHHHHHHHHHHHCH-H-----TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH-T-GGGEEEE
T ss_pred cHHHHHHHHHHhccccc-----CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHh-CCCcceeee
Confidence 345666666665544 2 78899999999999999998884 458999999999999999999876 344568899
Q ss_pred EeCCCCCC----CCCCceeeEEec
Q 048398 243 HAIGEDSG----LPSKSFDVVSLS 262 (280)
Q Consensus 243 ~~d~~~~~----~~~~sfDlVi~~ 262 (280)
.+|....- ....+||+|++-
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred ccCHHHHHHhhcccCCCceEEEEC
Confidence 99864321 135789999975
No 191
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.24 E-value=3.3e-06 Score=69.45 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=69.8
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechhh
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYVV 265 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vl 265 (280)
...+.|+|+|+|.++...+++ .-+|++++.+|.-...|.+|+.-+ +..++..+.+|+.+..+. ..|+|+|-..=
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~--g~~n~evv~gDA~~y~fe--~ADvvicEmlD 106 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVP--GDVNWEVVVGDARDYDFE--NADVVICEMLD 106 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCC--CCcceEEEeccccccccc--ccceeHHHHhh
Confidence 468999999999999999987 779999999999999999998666 567999999999998883 47999986654
Q ss_pred hhCCChhhhhhh
Q 048398 266 CLLSNSEHLSVE 277 (280)
Q Consensus 266 h~l~d~~~~~~l 277 (280)
-.+-++.++.++
T Consensus 107 TaLi~E~qVpV~ 118 (252)
T COG4076 107 TALIEEKQVPVI 118 (252)
T ss_pred HHhhcccccHHH
Confidence 444444444433
No 192
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.24 E-value=3e-06 Score=78.38 Aligned_cols=75 Identities=20% Similarity=0.115 Sum_probs=63.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----CCCCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSA-KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----LPSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~-~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~sfDlV 259 (280)
++++|||+-|-||.++..++.. ++ +||+||+|..+++.|++|++.|+-...++.|+++|+.+.- -...+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 6889999999999999999987 66 9999999999999999999999323467899999987751 123489999
Q ss_pred Ee
Q 048398 260 SL 261 (280)
Q Consensus 260 i~ 261 (280)
++
T Consensus 295 il 296 (393)
T COG1092 295 IL 296 (393)
T ss_pred EE
Confidence 96
No 193
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.22 E-value=6.9e-06 Score=75.10 Aligned_cols=77 Identities=21% Similarity=0.200 Sum_probs=66.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC--------------------------------C-------eEEEEeCCHHHHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS--------------------------------A-------KVTGLDLSPYFLAVA 225 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~--------------------------------~-------~v~gvDisp~~l~~A 225 (280)
+...++|-=||+|.+.+..+-..++ + .++|+|+++.+++.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 4568999999999999998877531 1 277999999999999
Q ss_pred HHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 226 QLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
+.|+... |..+.|+|.++|+..+.-+-..+|+||||
T Consensus 271 k~NA~~A-Gv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 271 KANARAA-GVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHHHhc-CCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 9999998 78899999999999885443679999998
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.21 E-value=1.9e-05 Score=65.94 Aligned_cols=75 Identities=24% Similarity=0.214 Sum_probs=61.9
Q ss_pred cEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechhh
Q 048398 188 DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYVV 265 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vl 265 (280)
+++|||+|-|.-++.++-.+|..+++.+|....=+...+...... ...|++++++.+++ +....+||+|+++.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L--~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL--GLSNVEVINGRAEE-PEYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH--T-SSEEEEES-HHH-TTTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh--CCCCEEEEEeeecc-cccCCCccEEEeehhc
Confidence 799999999999999999999999999999998887777776665 35689999999999 3446789999998764
No 195
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=7e-06 Score=68.73 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcC--------CCCCC
Q 048398 169 GNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGG--------PRKNP 238 (280)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~--------~~~~~ 238 (280)
...++.|..++. ++.+.||+|.|+|.++..++... ++...+|||.-|+.++.+++++...- -...+
T Consensus 70 a~~le~L~~~L~----pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 70 ATALEYLDDHLQ----PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHhhc----cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 333444444443 78899999999999998888664 34455999999999999999987541 02357
Q ss_pred eEEEEeCCCCCCCCCCceeeEEechhhhhCCC
Q 048398 239 ISWVHAIGEDSGLPSKSFDVVSLSYVVCLLSN 270 (280)
Q Consensus 239 v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d 270 (280)
+.++.+|.....-+..+||.|++-.....+|.
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~pq 177 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAASELPQ 177 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCccccHH
Confidence 88999999887666789999999866655543
No 196
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.20 E-value=9.3e-06 Score=81.18 Aligned_cols=77 Identities=21% Similarity=0.197 Sum_probs=64.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhC----C--------------------------------------CCeEEEEeCCHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF----P--------------------------------------SAKVTGLDLSPYFL 222 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~----p--------------------------------------~~~v~gvDisp~~l 222 (280)
+...++|-+||+|.+.+..+... | ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46789999999999998876531 1 13699999999999
Q ss_pred HHHHHHHHhcCCCCCCeEEEEeCCCCCCCC--CCceeeEEec
Q 048398 223 AVAQLKEKKGGPRKNPISWVHAIGEDSGLP--SKSFDVVSLS 262 (280)
Q Consensus 223 ~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~sfDlVi~~ 262 (280)
+.|+.|+..+ +..+.++|.++|+.+++.+ .++||+|++|
T Consensus 270 ~~A~~N~~~~-g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 270 QAARKNARRA-GVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred HHHHHHHHHc-CCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 9999999988 5667899999999887654 3579999998
No 197
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=3.7e-06 Score=71.81 Aligned_cols=46 Identities=30% Similarity=0.609 Sum_probs=42.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEK 230 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~ 230 (280)
.+..+|||||-.|.++..+++.|..-.|+|+||++..|..|+++++
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 7889999999999999999999966689999999999999999864
No 198
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.18 E-value=3.5e-06 Score=81.03 Aligned_cols=81 Identities=16% Similarity=0.087 Sum_probs=68.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC--CCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS--GLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~sfDlVi~~ 262 (280)
....+||||||.|.++..+++.+|...++|+|+....+..+....... ...|+.++.+|+..+ -++++++|.|+++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~--~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ--NITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 567899999999999999999999999999999999999988887665 467899888887432 2678899999987
Q ss_pred hhhhh
Q 048398 263 YVVCL 267 (280)
Q Consensus 263 ~vlh~ 267 (280)
+-=.+
T Consensus 425 FPDPW 429 (506)
T PRK01544 425 FPDPW 429 (506)
T ss_pred CCCCC
Confidence 75444
No 199
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.16 E-value=1.1e-06 Score=82.37 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhh--hcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEE---eCCHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 048398 170 NWLQAIEKHHQQ--YAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGL---DLSPYFLAVAQLKEKKGGPRKNPISWVHA 244 (280)
Q Consensus 170 ~~~~~l~~~~~~--~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gv---Disp~~l~~A~~~~~~~~~~~~~v~~~~~ 244 (280)
.|++.|.+.+.. ..+..+.+||+|||+|.++..|.++ +..+..+ |..+.+++.|.++ |.. ..+-..
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-----Gvp--a~~~~~ 170 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER-----GVP--AMIGVL 170 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc-----Ccc--hhhhhh
Confidence 345555555433 2226788999999999999999988 4333222 2233344444333 111 111122
Q ss_pred CCCCCCCCCCceeeEEechhhhhCCChh
Q 048398 245 IGEDSGLPSKSFDVVSLSYVVCLLSNSE 272 (280)
Q Consensus 245 d~~~~~~~~~sfDlVi~~~vlh~l~d~~ 272 (280)
.-..+|+|+++||+|+|..++..+....
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~~ 198 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLIPWHPND 198 (506)
T ss_pred ccccccCCccchhhhhcccccccchhcc
Confidence 2457899999999999998887666543
No 200
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.15 E-value=9.8e-06 Score=64.71 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=65.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhC----CCCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCeEEEEeCCCCCCCCCCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF----PSAKVTGLDLSPYFLAVAQLKEKKGGP-RKNPISWVHAIGEDSGLPSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~----p~~~v~gvDisp~~l~~A~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~sfDlV 259 (280)
+..+|+|+|||.|.+++.++..+ ++.+|+|+|.++..++.+..+.+.... ...++++..++...... ....+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 103 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDIL 103 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeEE
Confidence 78899999999999999999822 688999999999999999988876511 23567777777765532 4457888
Q ss_pred EechhhhhCCC
Q 048398 260 SLSYVVCLLSN 270 (280)
Q Consensus 260 i~~~vlh~l~d 270 (280)
+.-+....+.+
T Consensus 104 vgLHaCG~Ls~ 114 (141)
T PF13679_consen 104 VGLHACGDLSD 114 (141)
T ss_pred EEeecccchHH
Confidence 87776655544
No 201
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=3.2e-06 Score=79.28 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=72.7
Q ss_pred CCcchhHHhHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Q 048398 156 YASSVDKANDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPR 235 (280)
Q Consensus 156 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~ 235 (280)
.+..|.+.+......+...+.+... .+ ..+.+||+-||||.++..+++. ..+|+|++++|.+++-|+.|+..| +
T Consensus 356 Sp~AFFQ~Nt~~aevLys~i~e~~~-l~-~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~N--g 429 (534)
T KOG2187|consen 356 SPGAFFQTNTSAAEVLYSTIGEWAG-LP-ADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQIN--G 429 (534)
T ss_pred CCchhhccCcHHHHHHHHHHHHHhC-CC-CCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhc--C
Confidence 4556777777777766666666653 22 5689999999999999999987 679999999999999999999998 6
Q ss_pred CCCeEEEEeCCCCC
Q 048398 236 KNPISWVHAIGEDS 249 (280)
Q Consensus 236 ~~~v~~~~~d~~~~ 249 (280)
..|++|++|-+++.
T Consensus 430 isNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 430 ISNATFIVGQAEDL 443 (534)
T ss_pred ccceeeeecchhhc
Confidence 78999999976664
No 202
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=5.5e-06 Score=68.63 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=66.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
.+++|||+|+|+|..++..++.+ ...|+..|+.|..+...+.|.+.| +-.|.+.+.|.-. ++..||+|++..+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~an---gv~i~~~~~d~~g---~~~~~Dl~LagDl 151 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAAN---GVSILFTHADLIG---SPPAFDLLLAGDL 151 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhc---cceeEEeeccccC---CCcceeEEEeece
Confidence 78999999999999999999985 458999999999999999999988 3578888888766 3456999999988
Q ss_pred hhhCC
Q 048398 265 VCLLS 269 (280)
Q Consensus 265 lh~l~ 269 (280)
+..=+
T Consensus 152 fy~~~ 156 (218)
T COG3897 152 FYNHT 156 (218)
T ss_pred ecCch
Confidence 75433
No 203
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.11 E-value=1.4e-05 Score=71.65 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=71.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CCCCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LPSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~sfDlV 259 (280)
++..++|.-||.|..+..+++..|..+|+|+|.+|.+++.|++++... .++++++++++.++. ....++|.|
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~---~~R~~~i~~nF~~l~~~l~~~~~~~vDgI 96 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF---EGRVVLIHDNFANFFEHLDELLVTKIDGI 96 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc---CCcEEEEeCCHHHHHHHHHhcCCCcccEE
Confidence 567899999999999999999887789999999999999999998754 468999999987753 233579999
Q ss_pred Eechhh--hhCCChhh
Q 048398 260 SLSYVV--CLLSNSEH 273 (280)
Q Consensus 260 i~~~vl--h~l~d~~~ 273 (280)
++...+ ++++++++
T Consensus 97 l~DLGvSS~Qld~~~R 112 (305)
T TIGR00006 97 LVDLGVSSPQLDDPER 112 (305)
T ss_pred EEeccCCHhhcCCCCC
Confidence 988765 56666554
No 204
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.10 E-value=9.9e-06 Score=65.50 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=72.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CCCCceee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LPSKSFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~sfDl 258 (280)
.+.-||++|.|||.++.++.++. +...+++++.|+.++....+... .++++.||+.++. .++..||.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-------~~~ii~gda~~l~~~l~e~~gq~~D~ 120 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-------GVNIINGDAFDLRTTLGEHKGQFFDS 120 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-------CccccccchhhHHHHHhhcCCCeeee
Confidence 67789999999999999999875 45689999999999988877653 3468999988764 35677999
Q ss_pred EEechhhhhCCChhhhhhhh
Q 048398 259 VSLSYVVCLLSNSEHLSVER 278 (280)
Q Consensus 259 Vi~~~vlh~l~d~~~~~~l~ 278 (280)
|+|..-+-.+|-..++.++.
T Consensus 121 viS~lPll~~P~~~~iaile 140 (194)
T COG3963 121 VISGLPLLNFPMHRRIAILE 140 (194)
T ss_pred EEeccccccCcHHHHHHHHH
Confidence 99999999999888877654
No 205
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.09 E-value=3.2e-05 Score=68.25 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=61.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCC---CceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPS---KSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~---~sfDlVi~ 261 (280)
+...|||||+|.|.++..|.+. +.+++++|+++.+++..++.... .++++++++|+..+..+. +...+|++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~~----~~~~~vi~~D~l~~~~~~~~~~~~~~vv~ 103 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFAS----NPNVEVINGDFLKWDLYDLLKNQPLLVVG 103 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCTT----CSSEEEEES-TTTSCGGGHCSSSEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhhh----cccceeeecchhccccHHhhcCCceEEEE
Confidence 6789999999999999999999 48999999999999999887653 468999999999987654 34567776
Q ss_pred chh
Q 048398 262 SYV 264 (280)
Q Consensus 262 ~~v 264 (280)
+.-
T Consensus 104 NlP 106 (262)
T PF00398_consen 104 NLP 106 (262)
T ss_dssp EET
T ss_pred Eec
Confidence 643
No 206
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.08 E-value=1.3e-05 Score=71.35 Aligned_cols=76 Identities=16% Similarity=0.063 Sum_probs=58.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCCeEEEEeCCCCCC--C-CCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPR-KNPISWVHAIGEDSG--L-PSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~-~~~v~~~~~d~~~~~--~-~~~sfDlVi 260 (280)
++++|||+=|-||.++..++..+ ..+|+.||.|..+++.|++|+..| +. ..+++|+++|+.+.- + ..++||+||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 78899999999999999988762 348999999999999999999998 33 368999999987631 1 246899999
Q ss_pred ec
Q 048398 261 LS 262 (280)
Q Consensus 261 ~~ 262 (280)
+-
T Consensus 201 lD 202 (286)
T PF10672_consen 201 LD 202 (286)
T ss_dssp E-
T ss_pred EC
Confidence 73
No 207
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.08 E-value=2.7e-06 Score=71.65 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=56.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS 249 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~ 249 (280)
....|+|.-||.|..++..+.. ++.|+++|++|.-++.|++|++-- |..++|+|++||+.++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiY-GI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVY-GVPDRITFICGDFLDL 155 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceee-cCCceeEEEechHHHH
Confidence 5678999999999999999988 568999999999999999999988 6888999999998775
No 208
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.07 E-value=1.4e-05 Score=70.91 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=65.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCCeEEEEeCCCCCC-CCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG--PRKNPISWVHAIGEDSG-LPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~--~~~~~v~~~~~d~~~~~-~~~~sfDlVi~ 261 (280)
.+++||=||.|.|..++.+.+..+-.+++.+||+|..++.|++.+.... ...+|++.+.+|+.+.= -...+||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 5689999999999999999999877899999999999999999987652 11478999999987641 11237999997
Q ss_pred chh
Q 048398 262 SYV 264 (280)
Q Consensus 262 ~~v 264 (280)
--.
T Consensus 156 D~t 158 (282)
T COG0421 156 DST 158 (282)
T ss_pred cCC
Confidence 643
No 209
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=3.9e-05 Score=65.27 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=66.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC------CCCCCcee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS------GLPSKSFD 257 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~------~~~~~sfD 257 (280)
+++++||||.-||..++..+...| +.+|+++|+++...+.+....+.. +...+|+++++.+.+. ..+.++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-gv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-GVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-cccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 889999999999999999998886 469999999999999998888877 6888999999997553 13467899
Q ss_pred eEEec
Q 048398 258 VVSLS 262 (280)
Q Consensus 258 lVi~~ 262 (280)
+++.-
T Consensus 152 faFvD 156 (237)
T KOG1663|consen 152 FAFVD 156 (237)
T ss_pred EEEEc
Confidence 99963
No 210
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.06 E-value=1.3e-05 Score=68.03 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=57.4
Q ss_pred EEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCc-eeeEEech
Q 048398 189 ILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKS-FDVVSLSY 263 (280)
Q Consensus 189 ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~s-fDlVi~~~ 263 (280)
|+||||-.|.+.+.|.+.....+++++|+++.-++.|++++... +..++|++..+|+... ++.+. .|.|+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~-~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY-GLEDRIEVRLGDGLEV-LKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-T-TTTEEEEE-SGGGG---GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-CCcccEEEEECCcccc-cCCCCCCCEEEEec
Confidence 68999999999999999976668999999999999999999988 6788999999998764 44433 78887653
No 211
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.03 E-value=5.4e-05 Score=67.53 Aligned_cols=104 Identities=17% Similarity=0.115 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhhhcC---CCCcEEEECCCCC-hhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEE
Q 048398 167 MRGNWLQAIEKHHQQYAG---EIRDILDIGCSVG-VSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWV 242 (280)
Q Consensus 167 l~~~~~~~l~~~~~~~~~---~~~~ILDiGcGtG-~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~ 242 (280)
.+..|+..|.+.+..... ...++||||||.. +..+..++.+ +.+++|+|+++..++.|++++..|+.+.++|+++
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~ 159 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELR 159 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEE
Confidence 344555555555543221 2468999999977 4445555555 8999999999999999999999886678899987
Q ss_pred EeCCCC-----CCCCCCceeeEEechhhhhCCCh
Q 048398 243 HAIGED-----SGLPSKSFDVVSLSYVVCLLSNS 271 (280)
Q Consensus 243 ~~d~~~-----~~~~~~sfDlVi~~~vlh~l~d~ 271 (280)
...-.. +-.+...||+.+|+=-||.-.++
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e 193 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEE 193 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----SS---
T ss_pred EcCCccccchhhhcccceeeEEecCCccccChhh
Confidence 664221 11234579999999888766554
No 212
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.00 E-value=1.7e-05 Score=66.79 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=43.2
Q ss_pred HHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC
Q 048398 173 QAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP 252 (280)
Q Consensus 173 ~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~ 252 (280)
+.+.+.+...+ +...|.|+|||.+.++..+.. ..+|...|+-.. +-.++.+|+..+|++
T Consensus 61 d~iI~~l~~~~-~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-----------------n~~Vtacdia~vPL~ 119 (219)
T PF05148_consen 61 DVIIEWLKKRP-KSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-----------------NPRVTACDIANVPLE 119 (219)
T ss_dssp HHHHHHHCTS--TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------------STTEEES-TTS-S--
T ss_pred HHHHHHHHhcC-CCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----------------CCCEEEecCccCcCC
Confidence 34444444333 567999999999999866542 358999999521 234788999999999
Q ss_pred CCceeeEEechhhhhCC
Q 048398 253 SKSFDVVSLSYVVCLLS 269 (280)
Q Consensus 253 ~~sfDlVi~~~vlh~l~ 269 (280)
+++.|++++...|....
T Consensus 120 ~~svDv~VfcLSLMGTn 136 (219)
T PF05148_consen 120 DESVDVAVFCLSLMGTN 136 (219)
T ss_dssp TT-EEEEEEES---SS-
T ss_pred CCceeEEEEEhhhhCCC
Confidence 99999999999887544
No 213
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.00 E-value=1.5e-05 Score=72.35 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=68.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
.+.+|||+=+|.|.+++.+++.. ..+|+++|++|.+++..++|+..| +..+.+..++||........+.||-|++.+.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN-~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLN-KVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhc-CccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 68899999999999999999984 234999999999999999999999 5666799999999987544377999999876
Q ss_pred h
Q 048398 265 V 265 (280)
Q Consensus 265 l 265 (280)
-
T Consensus 266 ~ 266 (341)
T COG2520 266 K 266 (341)
T ss_pred C
Confidence 4
No 214
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.99 E-value=3.7e-05 Score=63.86 Aligned_cols=95 Identities=15% Similarity=0.070 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEE
Q 048398 164 NDVMRGNWLQAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVH 243 (280)
Q Consensus 164 ~~~l~~~~~~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~ 243 (280)
.+.++......|... .. .+.++||+-+|+|.+++.++.++ ..+++.+|.+...+...++|++.. +...+++++.
T Consensus 26 ~drVREalFNil~~~---~i-~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l-~~~~~~~~~~ 99 (187)
T COG0742 26 TDRVREALFNILAPD---EI-EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKAL-GLEGEARVLR 99 (187)
T ss_pred chHHHHHHHHhcccc---cc-CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHh-CCccceEEEe
Confidence 445566655555442 11 78899999999999999999985 568999999999999999998876 3457889999
Q ss_pred eCCCCC--CCCC-CceeeEEechh
Q 048398 244 AIGEDS--GLPS-KSFDVVSLSYV 264 (280)
Q Consensus 244 ~d~~~~--~~~~-~sfDlVi~~~v 264 (280)
.|+... .... ++||+|++-=-
T Consensus 100 ~da~~~L~~~~~~~~FDlVflDPP 123 (187)
T COG0742 100 NDALRALKQLGTREPFDLVFLDPP 123 (187)
T ss_pred ecHHHHHHhcCCCCcccEEEeCCC
Confidence 998743 1222 24999997533
No 215
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.98 E-value=2.8e-05 Score=70.23 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=64.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEe-CCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHA-IGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~sfDlVi~~ 262 (280)
++..|||==||||.+++.+.-. +++++|+|++..|+.-|+.|++.. ......+..+ |+.++|+++.+||.|++-
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y--~i~~~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYY--GIEDYPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhh--CcCceeEEEecccccCCCCCCccceEEec
Confidence 6679999999999999998876 899999999999999999999877 3445555555 999999998889999874
No 216
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.93 E-value=2.7e-05 Score=68.08 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=60.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCC--CCCCeEEEEeCCCCCC-CCCC-ceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGP--RKNPISWVHAIGEDSG-LPSK-SFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~--~~~~v~~~~~d~~~~~-~~~~-sfDlVi 260 (280)
++++||=||.|.|..+..+.+..+..+|+++|++|.+++.|++.+..... ..++++++.+|+...= -..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 78999999999999999999876567999999999999999998754211 2468999999985531 1123 799999
Q ss_pred echh
Q 048398 261 LSYV 264 (280)
Q Consensus 261 ~~~v 264 (280)
.-..
T Consensus 156 ~D~~ 159 (246)
T PF01564_consen 156 VDLT 159 (246)
T ss_dssp EESS
T ss_pred EeCC
Confidence 7543
No 217
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.92 E-value=6.8e-05 Score=63.85 Aligned_cols=76 Identities=32% Similarity=0.347 Sum_probs=64.0
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCc-eeeEEechh
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKS-FDVVSLSYV 264 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~s-fDlVi~~~v 264 (280)
+.+++|||+|.|.-++.++-.+|+.+++.+|....=+..-+....+- ...|++++++.+++.... .. ||+|.++.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL--~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL--GLENVEIVHGRAEEFGQE-KKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh--CCCCeEEehhhHhhcccc-cccCcEEEeehc
Confidence 68999999999999999998899999999999988777777666655 467899999999998532 23 999999865
No 218
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.92 E-value=3e-05 Score=69.93 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=56.0
Q ss_pred CCCcEEEECCCCChhHHHHHhh-------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC--CCc
Q 048398 185 EIRDILDIGCSVGVSTKCLADK-------FPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP--SKS 255 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~-------~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~s 255 (280)
...+|+|-+||+|.+...+.+. .+..+++|+|+++.++..|+.++...+.......+.++|....+.. ..+
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 5568999999999999888774 3578999999999999999988765411122346888887654432 468
Q ss_pred eeeEEechhh
Q 048398 256 FDVVSLSYVV 265 (280)
Q Consensus 256 fDlVi~~~vl 265 (280)
||+|+++=-+
T Consensus 126 ~D~ii~NPPf 135 (311)
T PF02384_consen 126 FDVIIGNPPF 135 (311)
T ss_dssp EEEEEEE--C
T ss_pred cccccCCCCc
Confidence 9999998444
No 219
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.89 E-value=7.4e-05 Score=65.44 Aligned_cols=87 Identities=24% Similarity=0.267 Sum_probs=51.4
Q ss_pred CCCcEEEECCCCC--hhHHHHH-hhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----------
Q 048398 185 EIRDILDIGCSVG--VSTKCLA-DKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----------- 250 (280)
Q Consensus 185 ~~~~ILDiGcGtG--~~a~~l~-~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----------- 250 (280)
.....||||||-- .....++ +..|+++|+-+|.+|..++.++..+..+ ..++..++++|+.+..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~--~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN--PRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC--CCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 5678999999943 2444444 4469999999999999999999998766 2235899999986631
Q ss_pred CCCCceeeEEechhhhhCCChhh
Q 048398 251 LPSKSFDVVSLSYVVCLLSNSEH 273 (280)
Q Consensus 251 ~~~~sfDlVi~~~vlh~l~d~~~ 273 (280)
+.-..-=.|++..+|||++|.+.
T Consensus 146 lD~~rPVavll~~vLh~v~D~~d 168 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDD 168 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCT
T ss_pred CCCCCCeeeeeeeeeccCCCccC
Confidence 11122336888899999998443
No 220
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.88 E-value=1.9e-05 Score=73.01 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=61.8
Q ss_pred CcEEEECCCCChhHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC-CCCceeeEEech
Q 048398 187 RDILDIGCSVGVSTKCLADKFPS-AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL-PSKSFDVVSLSY 263 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~p~-~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~sfDlVi~~~ 263 (280)
.+|||+.||+|..++.++...++ .+|+++|++|.+++.+++|++.+ ...+++++++|+...-. ...+||+|.+.=
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N--~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN--SVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 58999999999999999987544 58999999999999999999988 34578899999876521 135799998753
No 221
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.80 E-value=4.7e-05 Score=69.99 Aligned_cols=90 Identities=28% Similarity=0.266 Sum_probs=76.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+...++|+|||.|.....+.... .++++|+|.+++.+..+....... ....+..++.+|+...|++++.||.+.+..+
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~-~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA-YLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred ccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH-HhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 44579999999999999998753 789999999999999988766544 3445666799999999999999999999999
Q ss_pred hhhCCChhhhhh
Q 048398 265 VCLLSNSEHLSV 276 (280)
Q Consensus 265 lh~l~d~~~~~~ 276 (280)
.+|.++...+..
T Consensus 188 ~~~~~~~~~~y~ 199 (364)
T KOG1269|consen 188 VCHAPDLEKVYA 199 (364)
T ss_pred cccCCcHHHHHH
Confidence 999999887644
No 222
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.79 E-value=7.1e-05 Score=65.03 Aligned_cols=77 Identities=25% Similarity=0.185 Sum_probs=57.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
+..++||||.|.|..+..++..+ .+|++.|+|+.|....+++ ..+. .+..+..-.+.+||+|.|-++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k---------g~~v--l~~~~w~~~~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK---------GFTV--LDIDDWQQTDFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC---------CCeE--EehhhhhccCCceEEEeehhh
Confidence 56789999999999999999885 4799999999996654432 2222 233333223567999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
|-...+|..+
T Consensus 161 LDRc~~P~~L 170 (265)
T PF05219_consen 161 LDRCDRPLTL 170 (265)
T ss_pred hhccCCHHHH
Confidence 9887777654
No 223
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.79 E-value=7.2e-05 Score=67.63 Aligned_cols=69 Identities=22% Similarity=0.179 Sum_probs=53.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++.++|||||++|.|+..+.+. +++|++||..+-. ..+.. .++|....+|......+.+.+|+++|-.+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-----~~L~~----~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-----QSLMD----TGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-----HhhhC----CCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 7889999999999999999998 7799999975421 12222 35889999888776333678999999776
No 224
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.78 E-value=4.3e-05 Score=64.87 Aligned_cols=81 Identities=20% Similarity=0.181 Sum_probs=51.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHH-------hcCCCCCCeEEEEeCCCCCCCCC---C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEK-------KGGPRKNPISWVHAIGEDSGLPS---K 254 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~-------~~~~~~~~v~~~~~d~~~~~~~~---~ 254 (280)
+...++|||||.|...+.++-..+..+.+||++.+...+.|..... ..+....++++.++|+.+.++.. .
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 6789999999999998888876655569999999998888876432 22112457889999987654211 2
Q ss_pred ceeeEEechhh
Q 048398 255 SFDVVSLSYVV 265 (280)
Q Consensus 255 sfDlVi~~~vl 265 (280)
..|+|++++.+
T Consensus 122 ~AdvVf~Nn~~ 132 (205)
T PF08123_consen 122 DADVVFVNNTC 132 (205)
T ss_dssp C-SEEEE--TT
T ss_pred CCCEEEEeccc
Confidence 36999999875
No 225
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.77 E-value=0.00012 Score=63.39 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=66.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
.+.+|+|||||-==++.......|++.++|+||+..+++.....+... ..+.+..+.|.... .+....|+.++--+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l---~~~~~~~v~Dl~~~-~~~~~~DlaLllK~ 180 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL---GVPHDARVRDLLSD-PPKEPADLALLLKT 180 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT---T-CEEEEEE-TTTS-HTTSEESEEEEET-
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh---CCCcceeEeeeecc-CCCCCcchhhHHHH
Confidence 588999999999999998888878899999999999999999887765 45678888898876 34567999999999
Q ss_pred hhhCCChhh
Q 048398 265 VCLLSNSEH 273 (280)
Q Consensus 265 lh~l~d~~~ 273 (280)
++-+....+
T Consensus 181 lp~le~q~~ 189 (251)
T PF07091_consen 181 LPCLERQRR 189 (251)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHHhc
Confidence 988876554
No 226
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.74 E-value=6.2e-05 Score=72.91 Aligned_cols=76 Identities=18% Similarity=0.076 Sum_probs=55.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC--------CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP--------SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p--------~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~----- 251 (280)
...+|||.|||+|.+...+.+..+ ...++|+|+++.++..|+.++... + ...+...++|.....+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~-~-~~~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF-A-LLEINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc-C-CCCceeeeccccccccccccc
Confidence 356899999999999999887653 257899999999999999998765 1 1234555555432111
Q ss_pred CCCceeeEEec
Q 048398 252 PSKSFDVVSLS 262 (280)
Q Consensus 252 ~~~sfDlVi~~ 262 (280)
..+.||+|+.|
T Consensus 109 ~~~~fD~IIgN 119 (524)
T TIGR02987 109 YLDLFDIVITN 119 (524)
T ss_pred ccCcccEEEeC
Confidence 12479999998
No 227
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00026 Score=59.94 Aligned_cols=78 Identities=19% Similarity=0.101 Sum_probs=67.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
+..+++||||=.|.+...+.+..+...+++.|+++.-++.|..++..+ +..++++...+|+...=-+++.+|+|+...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-NLSERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-CCcceEEEeccCCccccCccCCcCEEEEeC
Confidence 555699999999999999999999899999999999999999999988 688899999999965322344789988653
No 228
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.66 E-value=0.00039 Score=62.98 Aligned_cols=93 Identities=13% Similarity=0.054 Sum_probs=66.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhC----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEE--EEeCCCCC----CCC--
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF----PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISW--VHAIGEDS----GLP-- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~----p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~--~~~d~~~~----~~~-- 252 (280)
.+..|+|+|||.|.=+..|.+.. ...+++++|+|..+++.+..++... .-+.+++ +++|+.+. +-+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~--~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG--NFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc--cCCCeEEEEEEecHHHHHhhcccccc
Confidence 55689999999999777666554 2468999999999999999998722 1344555 88888552 111
Q ss_pred CCceeeEEe-chhhhhCCChhhhhhhhc
Q 048398 253 SKSFDVVSL-SYVVCLLSNSEHLSVERC 279 (280)
Q Consensus 253 ~~sfDlVi~-~~vlh~l~d~~~~~~l~~ 279 (280)
.....+++. -.+|.++++.+.+..+++
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~ 181 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAG 181 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHH
Confidence 123455554 569999999998877764
No 229
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.62 E-value=0.00019 Score=62.14 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=54.8
Q ss_pred HHHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC
Q 048398 173 QAIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP 252 (280)
Q Consensus 173 ~~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~ 252 (280)
+.|.+.+...+ ....|.|+|||.+.++. .. ..+|+.+|+-+ .+-+++.+|+.++|++
T Consensus 169 d~ii~~ik~r~-~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a-----------------~~~~V~~cDm~~vPl~ 225 (325)
T KOG3045|consen 169 DVIIRKIKRRP-KNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA-----------------VNERVIACDMRNVPLE 225 (325)
T ss_pred HHHHHHHHhCc-CceEEEecccchhhhhh---cc--ccceeeeeeec-----------------CCCceeeccccCCcCc
Confidence 44444544433 67789999999998765 22 35799999842 2446789999999999
Q ss_pred CCceeeEEechhhhh
Q 048398 253 SKSFDVVSLSYVVCL 267 (280)
Q Consensus 253 ~~sfDlVi~~~vlh~ 267 (280)
+++.|+++++..|.-
T Consensus 226 d~svDvaV~CLSLMg 240 (325)
T KOG3045|consen 226 DESVDVAVFCLSLMG 240 (325)
T ss_pred cCcccEEEeeHhhhc
Confidence 999999999988864
No 230
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00064 Score=59.29 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=69.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC--CCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP--SKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~sfDlVi~ 261 (280)
++.+||+-|+|+|.++.++++.. |..+++-+|+...-.+.|++.+++. +..+++++.+-|+....+. +..+|.|++
T Consensus 105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-gi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-GIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-CCCcceEEEEeecccCCccccccccceEEE
Confidence 78899999999999999999886 7789999999988899999999988 6889999999999877654 577999987
Q ss_pred chh
Q 048398 262 SYV 264 (280)
Q Consensus 262 ~~v 264 (280)
-.-
T Consensus 184 DlP 186 (314)
T KOG2915|consen 184 DLP 186 (314)
T ss_pred cCC
Confidence 643
No 231
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.57 E-value=0.00068 Score=52.36 Aligned_cols=78 Identities=35% Similarity=0.428 Sum_probs=53.1
Q ss_pred EEEECCCCChhHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC--CCCCC-CceeeEEechh
Q 048398 189 ILDIGCSVGVSTKCLADKFPS-AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGED--SGLPS-KSFDVVSLSYV 264 (280)
Q Consensus 189 ILDiGcGtG~~a~~l~~~~p~-~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~sfDlVi~~~v 264 (280)
++|+|||+|... .+....+. ..++|+|+++.++..++...... ....+.+..++... .++.. ..||++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA--GLGLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc--CCCceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999977 44443322 48999999999999855443211 11116888888876 66766 48999944444
Q ss_pred hhhCC
Q 048398 265 VCLLS 269 (280)
Q Consensus 265 lh~l~ 269 (280)
+++..
T Consensus 129 ~~~~~ 133 (257)
T COG0500 129 LHLLP 133 (257)
T ss_pred hhcCC
Confidence 44444
No 232
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.54 E-value=4.6e-05 Score=66.78 Aligned_cols=77 Identities=25% Similarity=0.193 Sum_probs=62.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
....++|+|||.|-.+.. .|.+-++|+|++...+..|+.. +......+|+.++|+++.+||.++...+
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccC--------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 577899999999975322 3788899999998888776533 1126788999999999999999999999
Q ss_pred hhhCCChhh
Q 048398 265 VCLLSNSEH 273 (280)
Q Consensus 265 lh~l~d~~~ 273 (280)
+||+....+
T Consensus 113 ihhlsT~~R 121 (293)
T KOG1331|consen 113 IHHLSTRER 121 (293)
T ss_pred hhhhhhHHH
Confidence 999987665
No 233
>PRK00536 speE spermidine synthase; Provisional
Probab=97.52 E-value=0.00044 Score=60.81 Aligned_cols=74 Identities=12% Similarity=-0.019 Sum_probs=56.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG--PRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
.+++||=||.|-|..++.+.+. | .+|+.+||++.+++.+++.+.... -..+|++++.. +.+ ...++||+||+-
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 8899999999999999999996 4 499999999999999999654321 12457777652 221 123679999987
Q ss_pred h
Q 048398 263 Y 263 (280)
Q Consensus 263 ~ 263 (280)
.
T Consensus 147 s 147 (262)
T PRK00536 147 Q 147 (262)
T ss_pred C
Confidence 4
No 234
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.48 E-value=0.0002 Score=64.27 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=63.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-CCCceee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-PSKSFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~sfDl 258 (280)
+...++|.--|.|..+..+++.+|.++++|+|.+|.+++.|++++... .+++.++++++.++. . .-.++|.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F~~l~~~l~~~~~~~~~dg 96 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNFSNLDEYLKELNGINKVDG 96 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-GGGHHHHHHHTTTTS-EEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccHHHHHHHHHHccCCCccCE
Confidence 677999999999999999999998899999999999999999888754 579999999987753 2 2357999
Q ss_pred EEechhh--hhCCChhh
Q 048398 259 VSLSYVV--CLLSNSEH 273 (280)
Q Consensus 259 Vi~~~vl--h~l~d~~~ 273 (280)
|++-..+ ++++++++
T Consensus 97 iL~DLGvSS~Qld~~~R 113 (310)
T PF01795_consen 97 ILFDLGVSSMQLDDPER 113 (310)
T ss_dssp EEEE-S--HHHHHTGGG
T ss_pred EEEccccCHHHhCCCCC
Confidence 9976554 56666554
No 235
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.35 E-value=0.00019 Score=60.79 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=53.5
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC---CCceeeEEec
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP---SKSFDVVSLS 262 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~sfDlVi~~ 262 (280)
..++|||||=+......-.. -..|+.||+++. .-.+.+.|+.+.|+| +++||+|+++
T Consensus 52 ~lrlLEVGals~~N~~s~~~---~fdvt~IDLns~-----------------~~~I~qqDFm~rplp~~~~e~FdvIs~S 111 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSG---WFDVTRIDLNSQ-----------------HPGILQQDFMERPLPKNESEKFDVISLS 111 (219)
T ss_pred cceEEeecccCCCCcccccC---ceeeEEeecCCC-----------------CCCceeeccccCCCCCCcccceeEEEEE
Confidence 46999999987766554333 346999999752 224688899988875 6789999999
Q ss_pred hhhhhCCChhhh
Q 048398 263 YVVCLLSNSEHL 274 (280)
Q Consensus 263 ~vlh~l~d~~~~ 274 (280)
.||.++|++...
T Consensus 112 LVLNfVP~p~~R 123 (219)
T PF11968_consen 112 LVLNFVPDPKQR 123 (219)
T ss_pred EEEeeCCCHHHH
Confidence 999999987763
No 236
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.29 E-value=0.0012 Score=56.28 Aligned_cols=85 Identities=13% Similarity=0.052 Sum_probs=58.4
Q ss_pred CCCcEEEECCCCChh-HHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC-----CCCCCCceee
Q 048398 185 EIRDILDIGCSVGVS-TKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGED-----SGLPSKSFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~-a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~sfDl 258 (280)
+..++||||.|.-.. -+.=.+.| +.+.+|.|+++..++.|+.++..|++....|++..-.-.+ +--..+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 566899999886532 11112223 7899999999999999999998886555666665433221 1112567999
Q ss_pred EEechhhhhCCC
Q 048398 259 VSLSYVVCLLSN 270 (280)
Q Consensus 259 Vi~~~vlh~l~d 270 (280)
++|+=-||.-.+
T Consensus 157 tlCNPPFh~s~~ 168 (292)
T COG3129 157 TLCNPPFHDSAA 168 (292)
T ss_pred EecCCCcchhHH
Confidence 999998886443
No 237
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0013 Score=55.46 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=51.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------CCCCc
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------LPSKS 255 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~s 255 (280)
+..+|+|+|+..|.|+..+++.. ++.+|+|+|+.|-- ...+|.++++|+..-+ +...+
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-------------PIPGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-------------cCCCceEEeeeccCccHHHHHHHHcCCCC
Confidence 77899999999999999998876 33469999998641 2346999999997643 34556
Q ss_pred eeeEEec
Q 048398 256 FDVVSLS 262 (280)
Q Consensus 256 fDlVi~~ 262 (280)
+|+|++-
T Consensus 112 ~DvV~sD 118 (205)
T COG0293 112 VDVVLSD 118 (205)
T ss_pred cceEEec
Confidence 7999964
No 238
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.23 E-value=0.0015 Score=62.29 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=62.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-CCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-LPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~sfDlVi~ 261 (280)
++.+|||++||.|.=+..++.... ...|+++|+++.-++..++|++.. +..++.+.+.|...+. ...+.||.|++
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~--G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC--GVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 678999999999999999988764 358999999999999999999987 4567888888887653 22356999993
No 239
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.23 E-value=0.00078 Score=62.36 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=52.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS 249 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~ 249 (280)
+..-|||||+|||.++..+.+.+ +-.|++++.-..|...|++...++ +..++|+++.---.+.
T Consensus 66 gkv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kn-g~SdkI~vInkrStev 128 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKN-GMSDKINVINKRSTEV 128 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcC-CCccceeeecccccee
Confidence 33469999999999999999986 447999999999999999999998 6788888876544443
No 240
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.12 E-value=0.0018 Score=57.34 Aligned_cols=82 Identities=23% Similarity=0.203 Sum_probs=48.6
Q ss_pred CCCcEEEECCCCC-hhHHHHHhh-CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVG-VSTKCLADK-FPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG-~~a~~l~~~-~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
.+.+|+=||||.= ..++.+++. .+++.++++|++|.+++.+++......+...++.|+.+|..+.+..-..||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 3579999999955 455555544 46789999999999999999887732245678999999998765444579999987
Q ss_pred hhhh
Q 048398 263 YVVC 266 (280)
Q Consensus 263 ~vlh 266 (280)
....
T Consensus 200 alVg 203 (276)
T PF03059_consen 200 ALVG 203 (276)
T ss_dssp TT-S
T ss_pred hhcc
Confidence 6554
No 241
>PRK10742 putative methyltransferase; Provisional
Probab=97.05 E-value=0.0021 Score=55.87 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=61.5
Q ss_pred cEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhc------CC-CCCCeEEEEeCCCCCC-CCCCceeeE
Q 048398 188 DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKG------GP-RKNPISWVHAIGEDSG-LPSKSFDVV 259 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~------~~-~~~~v~~~~~d~~~~~-~~~~sfDlV 259 (280)
+|||+-+|.|..++.++.. +++|+++|-+|......++++... +. ...+++++++|....- -...+||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999998 888999999999999998887652 01 1257899999976541 112379999
Q ss_pred Eechhhhh
Q 048398 260 SLSYVVCL 267 (280)
Q Consensus 260 i~~~vlh~ 267 (280)
++-=.+.|
T Consensus 169 YlDPMfp~ 176 (250)
T PRK10742 169 YLDPMFPH 176 (250)
T ss_pred EECCCCCC
Confidence 98766555
No 242
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.05 E-value=0.00034 Score=59.73 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=59.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC--CCCCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSA-KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS--GLPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~-~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~sfDlVi 260 (280)
++.+|||..+|-|..++...++ ++ .|+-++-+|+.++.|.-|-=..+-....|+++.||+.+. .+++.+||+|+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 6789999999999999999999 66 999999999999998766311101123689999998664 37788999997
No 243
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.92 E-value=0.0013 Score=55.14 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=51.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC-----CCCCCeEEEEeCCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG-----PRKNPISWVHAIGEDS 249 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~-----~~~~~v~~~~~d~~~~ 249 (280)
+.-.+.|||||-|.+++.|+..||+.-++|++|--..-+..++++.... +...++.+...+....
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 3457999999999999999999999999999998777888777765431 2345677777776654
No 244
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.80 E-value=0.0075 Score=53.62 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=65.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CCCCceee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSA-KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LPSKSFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~-~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~sfDl 258 (280)
+....+|.--|-|..+..+.+.+|.. +++|+|-+|.+++.|++.+... .++++++++++.++. ...+++|-
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~---~~r~~~v~~~F~~l~~~l~~~~i~~vDG 99 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF---DGRVTLVHGNFANLAEALKELGIGKVDG 99 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc---CCcEEEEeCcHHHHHHHHHhcCCCceeE
Confidence 56899999999999999999998754 6999999999999999999876 479999999987653 22457888
Q ss_pred EEechhh
Q 048398 259 VSLSYVV 265 (280)
Q Consensus 259 Vi~~~vl 265 (280)
|++-..+
T Consensus 100 iL~DLGV 106 (314)
T COG0275 100 ILLDLGV 106 (314)
T ss_pred EEEeccC
Confidence 8876655
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.65 E-value=0.0032 Score=57.23 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=59.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHH--H-hcC--CCCCCeEEEEeCCCCCC-CCCCcee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKE--K-KGG--PRKNPISWVHAIGEDSG-LPSKSFD 257 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~--~-~~~--~~~~~v~~~~~d~~~~~-~~~~sfD 257 (280)
...++|=+|.|.|.-++.+.+ +| ..+|+-+|++|.|++.++++. . .|. -...+++.+..|+.++- -..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 667899999999999999987 57 459999999999999999553 2 121 13468899999987751 1245799
Q ss_pred eEEech
Q 048398 258 VVSLSY 263 (280)
Q Consensus 258 lVi~~~ 263 (280)
+||...
T Consensus 368 ~vIVDl 373 (508)
T COG4262 368 VVIVDL 373 (508)
T ss_pred EEEEeC
Confidence 998643
No 246
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.0073 Score=48.15 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=60.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
+..+.+|+|.|.|......++.. -...+|++++|..+..++...-.. +..+.+.|..-|+.+..+.+-.+-+|+-.
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~-g~~k~trf~RkdlwK~dl~dy~~vviFga 147 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRA-GCAKSTRFRRKDLWKVDLRDYRNVVIFGA 147 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHH-hcccchhhhhhhhhhccccccceEEEeeh
Confidence 55799999999999999998874 347899999999999999887665 56778889888888877765445555433
No 247
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.47 E-value=0.0021 Score=53.18 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=46.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------CC--C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------LP--S 253 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~~--~ 253 (280)
+..+|||+||++|.|+..+.+.. +..+|+|+|+.+. . ....+.++++|+.+.. ++ .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~---~~~~~~~i~~d~~~~~~~~~i~~~~~~~~ 89 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------D---PLQNVSFIQGDITNPENIKDIRKLLPESG 89 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------G---S-TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------c---cccceeeeecccchhhHHHhhhhhccccc
Confidence 45899999999999999999986 5589999999866 1 1235666666653310 11 2
Q ss_pred CceeeEEechhh
Q 048398 254 KSFDVVSLSYVV 265 (280)
Q Consensus 254 ~sfDlVi~~~vl 265 (280)
.+||+|+|-...
T Consensus 90 ~~~dlv~~D~~~ 101 (181)
T PF01728_consen 90 EKFDLVLSDMAP 101 (181)
T ss_dssp CSESEEEE----
T ss_pred cCcceecccccc
Confidence 589999988743
No 248
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.023 Score=53.58 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=68.6
Q ss_pred CcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechhhh
Q 048398 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYVVC 266 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vlh 266 (280)
.++|-+|||.-.+...+.+.+ ...|+-+|+|+..++........ ...-..|...|...+.|++.+||+|+....++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~---~~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAK---ERPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhcccc---CCcceEEEEecchhccCCCcceeEEEecCccc
Confidence 389999999999888888764 45799999999999887766532 34578999999999999999999999999998
Q ss_pred hCCChh
Q 048398 267 LLSNSE 272 (280)
Q Consensus 267 ~l~d~~ 272 (280)
++-..+
T Consensus 126 al~~de 131 (482)
T KOG2352|consen 126 ALFEDE 131 (482)
T ss_pred cccCCc
Confidence 876543
No 249
>PHA01634 hypothetical protein
Probab=96.43 E-value=0.04 Score=42.89 Aligned_cols=47 Identities=13% Similarity=-0.071 Sum_probs=42.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKG 232 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~ 232 (280)
..++|+|||.+.|..++.++-.+ ...|++++.+|...+..+++.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhh
Confidence 78999999999999999998773 347999999999999999988765
No 250
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.38 E-value=0.00066 Score=51.05 Aligned_cols=72 Identities=26% Similarity=0.290 Sum_probs=24.7
Q ss_pred EEECCCCChhHHHHHhhCCCC---eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC--CCCCCceeeEEech
Q 048398 190 LDIGCSVGVSTKCLADKFPSA---KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS--GLPSKSFDVVSLSY 263 (280)
Q Consensus 190 LDiGcGtG~~a~~l~~~~p~~---~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~sfDlVi~~~ 263 (280)
|||||..|..+..+++..+.. +++++|..+. .+.+++.+++. +...+++++.++..+. .++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------G-GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 689999999999988766433 7999999985 33344444332 2456899999998654 12346899999764
No 251
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.31 E-value=0.014 Score=51.02 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=55.4
Q ss_pred CCcEEEECCCCChhHHHHHhhCC--------CCeEEEEeCCHHHHHHHHHHHHhc----CCCCCCeEEEEeCCCCCCCCC
Q 048398 186 IRDILDIGCSVGVSTKCLADKFP--------SAKVTGLDLSPYFLAVAQLKEKKG----GPRKNPISWVHAIGEDSGLPS 253 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p--------~~~v~gvDisp~~l~~A~~~~~~~----~~~~~~v~~~~~d~~~~~~~~ 253 (280)
+.+|+|+|.|+|.++..+.+... ..+++.+|+||.+.+.-++++... .....+|.| ..++.+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 57999999999999999887642 358999999999988888887542 013456777 33554443
Q ss_pred CceeeEEechhhhhCCC
Q 048398 254 KSFDVVSLSYVVCLLSN 270 (280)
Q Consensus 254 ~sfDlVi~~~vlh~l~d 270 (280)
..-+|+++.+|-.+|-
T Consensus 95 -~~~~iiaNE~~DAlP~ 110 (252)
T PF02636_consen 95 -FPGFIIANELFDALPV 110 (252)
T ss_dssp -CCEEEEEESSGGGS--
T ss_pred -CCEEEEEeeehhcCce
Confidence 3578888888877764
No 252
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.21 E-value=0.0095 Score=49.40 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=48.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEe-CCCCC--------CCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHA-IGEDS--------GLPSK 254 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~-d~~~~--------~~~~~ 254 (280)
+..+|||+||..|.|+....++. |...|.|+|+-+.. -...++++++ |+.+. .+|+-
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-------------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-------------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 78899999999999999998886 88999999995321 1234556666 55442 14667
Q ss_pred ceeeEEech
Q 048398 255 SFDVVSLSY 263 (280)
Q Consensus 255 sfDlVi~~~ 263 (280)
+.|+|++-.
T Consensus 136 ~VdvVlSDM 144 (232)
T KOG4589|consen 136 PVDVVLSDM 144 (232)
T ss_pred cccEEEecc
Confidence 789888754
No 253
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.08 E-value=0.023 Score=49.11 Aligned_cols=79 Identities=27% Similarity=0.327 Sum_probs=48.3
Q ss_pred CcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH---HHHhcCCC----CCCeEEEEeCCCCC-CCCCCceee
Q 048398 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQL---KEKKGGPR----KNPISWVHAIGEDS-GLPSKSFDV 258 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~---~~~~~~~~----~~~v~~~~~d~~~~-~~~~~sfDl 258 (280)
.+|||.-+|-|.-++.++.. +++|++++-||.+....+. +....... ..+++++++|..+. ..++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 48999999999999999976 7899999999987665554 33332111 14789999998774 345789999
Q ss_pred EEechhhhh
Q 048398 259 VSLSYVVCL 267 (280)
Q Consensus 259 Vi~~~vlh~ 267 (280)
|++-=+|.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 999877765
No 254
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.08 E-value=0.0042 Score=46.77 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=27.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDL 217 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDi 217 (280)
+....+|||||.|.+...|... +....|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 5678999999999999999988 778899997
No 255
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.019 Score=49.37 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=49.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCe-EEEEeCCCCCC---CCCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPI-SWVHAIGEDSG---LPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v-~~~~~d~~~~~---~~~~sfDlVi 260 (280)
+++.+||||.+||.++-.+.+.+ ..+|+|+|..-.++..- ++.+ ++| .+...|+..+. +. +..|+++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~k---LR~d----~rV~~~E~tN~r~l~~~~~~-~~~d~~v 149 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWK---LRND----PRVIVLERTNVRYLTPEDFT-EKPDLIV 149 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHh---HhcC----CcEEEEecCChhhCCHHHcc-cCCCeEE
Confidence 88999999999999999999984 45899999987665542 2222 233 34444554432 22 2567777
Q ss_pred echhhh
Q 048398 261 LSYVVC 266 (280)
Q Consensus 261 ~~~vlh 266 (280)
|--+|.
T Consensus 150 ~DvSFI 155 (245)
T COG1189 150 IDVSFI 155 (245)
T ss_pred EEeehh
Confidence 765543
No 256
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.99 E-value=0.12 Score=45.68 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=58.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHh----c--------------------------C-
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKK----G--------------------------G- 233 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~----~--------------------------~- 233 (280)
...+||-=|||.|.++..++.. +..+.|.|.|-.|+-..+-.+.. + +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4678999999999999999999 78999999999997665542210 0 0
Q ss_pred -------CCCCCeEEEEeCCCCCCCCC---CceeeEEech
Q 048398 234 -------PRKNPISWVHAIGEDSGLPS---KSFDVVSLSY 263 (280)
Q Consensus 234 -------~~~~~v~~~~~d~~~~~~~~---~sfDlVi~~~ 263 (280)
....++....||+.+...++ ++||+|+..+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F 173 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF 173 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE
Confidence 12346778888888764444 6899998764
No 257
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.87 E-value=0.041 Score=47.95 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=54.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCCeEEEEeCCCCCC----CCCCce
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG----PRKNPISWVHAIGEDSG----LPSKSF 256 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~----~~~~~v~~~~~d~~~~~----~~~~sf 256 (280)
+..+||++|.|+|..++.++..+ .++|+..|+ |..+..-..+...+. ..+..+.....+....+ .+...|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 35679999999998777777754 789999998 566665555532221 12234444444433321 122229
Q ss_pred eeEEechhhhhCCChhh
Q 048398 257 DVVSLSYVVCLLSNSEH 273 (280)
Q Consensus 257 DlVi~~~vlh~l~d~~~ 273 (280)
|+|+++.++-+-...+.
T Consensus 164 DlilasDvvy~~~~~e~ 180 (248)
T KOG2793|consen 164 DLILASDVVYEEESFEG 180 (248)
T ss_pred cEEEEeeeeecCCcchh
Confidence 99999988866554443
No 258
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.83 E-value=0.095 Score=48.33 Aligned_cols=76 Identities=25% Similarity=0.265 Sum_probs=61.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CC-CCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS--AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LP-SKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~--~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~sfDlV 259 (280)
++.+|||+..+.|.=+..+++..++ ..|+++|+++.=+...++|+... +..++..++.|....+ .+ .++||.|
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl--G~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL--GVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc--CCCceEEEecccccccccccccCcCcEE
Confidence 6789999999999999998888754 56799999999999999999987 4556788888876543 22 2359999
Q ss_pred Eec
Q 048398 260 SLS 262 (280)
Q Consensus 260 i~~ 262 (280)
++-
T Consensus 234 LlD 236 (355)
T COG0144 234 LLD 236 (355)
T ss_pred EEC
Confidence 963
No 259
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.81 E-value=0.037 Score=49.42 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=61.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~sfDlVi~ 261 (280)
++.+|||+.++.|.=+..+++..+ ..++++.|+++.-+...+.++... +..++..+..|..... .....||.|++
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~--g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL--GVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT--T-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc--CCceEEEEeeccccccccccccccchhhc
Confidence 677899999999999999988875 579999999999999999999887 5667888877766541 22346999996
No 260
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.70 E-value=0.034 Score=47.02 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=39.0
Q ss_pred HHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 048398 174 AIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 174 ~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~ 227 (280)
.+.+.+.....++..|||.=||+|..+.++.+. +-+.+|+|+++..++.|++
T Consensus 180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 180 LIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhhhccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 333344344447889999999999999999988 7789999999999999874
No 261
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.67 E-value=0.041 Score=51.09 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=56.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCC-CeEEEEeCCCCCC-CCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS-AKVTGLDLSPYFLAVAQLKEKKGGPRKN-PISWVHAIGEDSG-LPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~-~~v~gvDisp~~l~~A~~~~~~~~~~~~-~v~~~~~d~~~~~-~~~~sfDlVi~ 261 (280)
++.+|||.=+|+|.=++..+...++ .+|+.-|+||.+++..++|++.| +... +++..+.|+..+- .....||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N-~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN-GLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC-T-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc-cccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 4568999999999988888877544 58999999999999999999988 5555 6888888887652 14567999853
No 262
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.65 E-value=0.026 Score=47.85 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC--CeEEEEeCCHHHHHHHHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS--AKVTGLDLSPYFLAVAQLKE 229 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~--~~v~gvDisp~~l~~A~~~~ 229 (280)
.+-+++|-.||.|.+.-.+.-.++. .+|+|.|+++.+++.|++|+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 6789999999999988777665533 37999999999999999975
No 263
>PRK11524 putative methyltransferase; Provisional
Probab=95.64 E-value=0.044 Score=48.90 Aligned_cols=56 Identities=7% Similarity=0.045 Sum_probs=45.9
Q ss_pred HHHHHhhhhcCCCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 048398 174 AIEKHHQQYAGEIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKK 231 (280)
Q Consensus 174 ~l~~~~~~~~~~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~ 231 (280)
.+...+.....++..|||-=||+|..+.++.+. +-+.+|+|++++.++.|++++..
T Consensus 197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 333444444447889999999999999998888 77899999999999999999754
No 264
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.61 E-value=0.003 Score=53.09 Aligned_cols=77 Identities=18% Similarity=0.119 Sum_probs=53.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
.+.++||+|.|.|..+..++-.+ .+|++.++|..|....++.- -+| .-..+..+. +-+||+|.|-++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~-------ynV-l~~~ew~~t---~~k~dli~clNl 178 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKN-------YNV-LTEIEWLQT---DVKLDLILCLNL 178 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcC-------Cce-eeehhhhhc---CceeehHHHHHH
Confidence 67899999999999999888764 46999999998887665431 111 111112222 446999999999
Q ss_pred hhhCCChhhh
Q 048398 265 VCLLSNSEHL 274 (280)
Q Consensus 265 lh~l~d~~~~ 274 (280)
+--..++-++
T Consensus 179 LDRc~~p~kL 188 (288)
T KOG3987|consen 179 LDRCFDPFKL 188 (288)
T ss_pred HHhhcChHHH
Confidence 8766665543
No 265
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.58 E-value=0.074 Score=49.39 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=50.5
Q ss_pred CCCcEEEECCCCChhHHHHHh--------h-------CCCCeEEEEeCCHHHHHHHHHHHHhc-------CC----CCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLAD--------K-------FPSAKVTGLDLSPYFLAVAQLKEKKG-------GP----RKNP 238 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~--------~-------~p~~~v~gvDisp~~l~~A~~~~~~~-------~~----~~~~ 238 (280)
+..+|+|+|||+|.+++.+.. . -|..+|+.-|+-.+=.+..=..+... .. ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 466899999999987755422 1 24578888888433222221111110 00 0111
Q ss_pred eEEE---EeCCCCCCCCCCceeeEEechhhhhCCC
Q 048398 239 ISWV---HAIGEDSGLPSKSFDVVSLSYVVCLLSN 270 (280)
Q Consensus 239 v~~~---~~d~~~~~~~~~sfDlVi~~~vlh~l~d 270 (280)
.-|+ .|++..-=+|.++.+++++.+.+|++..
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceeccc
Confidence 1232 2344333379999999999999999875
No 266
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.54 E-value=0.032 Score=49.56 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=54.6
Q ss_pred cEEEECCCCChhHHHHHhhCCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC--CCceeeEEechh
Q 048398 188 DILDIGCSVGVSTKCLADKFPSA-KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP--SKSFDVVSLSYV 264 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~p~~-~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~sfDlVi~~~v 264 (280)
+++|+-||.|.++..+.+. +. .+.++|+++.+++..+.|... ..+++|+.++... ...+|+++...-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~--------~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN--------KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC--------CCccCccccCchhhcCCCCCEEEeCCC
Confidence 6999999999999999887 45 478899999999888877532 1566777665422 246999998876
Q ss_pred hhhCC
Q 048398 265 VCLLS 269 (280)
Q Consensus 265 lh~l~ 269 (280)
+..+.
T Consensus 72 Cq~fS 76 (275)
T cd00315 72 CQPFS 76 (275)
T ss_pred Chhhh
Confidence 66554
No 267
>PRK13699 putative methylase; Provisional
Probab=95.35 E-value=0.072 Score=45.97 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=41.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKG 232 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~ 232 (280)
++..|||-=||+|..+.+..+. +-+.+|+|+++...+.|.+++...
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 6789999999999999998887 778999999999999999988654
No 268
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.15 E-value=0.063 Score=51.66 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=59.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC----CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC-----CCc
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP----SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP-----SKS 255 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p----~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~s 255 (280)
...+|+|-.||+|.+.....+... ...++|.|+++.....|+.|+-.+ +....+...++|-...|.. .+.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh-gi~~~~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH-GIEGDANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh-CCCccccccccccccCCcccccCCccc
Confidence 455899999999998777766542 267999999999999999999777 3322566777776555432 367
Q ss_pred eeeEEechhh
Q 048398 256 FDVVSLSYVV 265 (280)
Q Consensus 256 fDlVi~~~vl 265 (280)
||+|+++--+
T Consensus 265 ~D~viaNPPf 274 (489)
T COG0286 265 FDFVIANPPF 274 (489)
T ss_pred eeEEEeCCCC
Confidence 9999987443
No 269
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=95.06 E-value=0.21 Score=41.40 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=64.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCCeEEEEeCCCCC---------CCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG-PRKNPISWVHAIGEDS---------GLPSK 254 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~-~~~~~v~~~~~d~~~~---------~~~~~ 254 (280)
+...|+.+|||-=.....+....++.+++-+|+ |.+++.-++.+...+ ....+.+++.+|+.+. .+..+
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 455899999999998888888766789999998 888887777766541 0112467899998753 23345
Q ss_pred ceeeEEechhhhhCCChhhhhhhhc
Q 048398 255 SFDVVSLSYVVCLLSNSEHLSVERC 279 (280)
Q Consensus 255 sfDlVi~~~vlh~l~d~~~~~~l~~ 279 (280)
.--++++-.|+.|+++.+...+++.
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ 181 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRA 181 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHH
Confidence 5678889999999999887776654
No 270
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.89 E-value=0.36 Score=41.83 Aligned_cols=73 Identities=26% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC---CCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP---SKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~sfDlVi~ 261 (280)
.+++||-+|=.--. +++++-..+..+|+.+|+++..++.-++.+++. +-+|+..+.|+.+- +| .++||+++.
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~---gl~i~~~~~DlR~~-LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEE---GLPIEAVHYDLRDP-LPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH---T--EEEE---TTS----TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc---CCceEEEEeccccc-CCHHHhcCCCEEEe
Confidence 68899999966554 333444455789999999999999999998877 22499999999773 44 378999986
Q ss_pred c
Q 048398 262 S 262 (280)
Q Consensus 262 ~ 262 (280)
.
T Consensus 119 D 119 (243)
T PF01861_consen 119 D 119 (243)
T ss_dssp -
T ss_pred C
Confidence 4
No 271
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.83 E-value=0.021 Score=50.63 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=59.5
Q ss_pred CCCcEEEECCCCChhHH-HHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTK-CLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~-~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
....|+|+-.|.|++++ .+.... ...|+++|.+|+.++..+.+++.| +..+++..++||-... -++...|-|..-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N-~V~~r~~i~~gd~R~~-~~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEAN-NVMDRCRITEGDNRNP-KPRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhc-chHHHHHhhhcccccc-Cccccchheeec
Confidence 56899999999999999 666663 458999999999999999999888 5666777778877665 345566766643
No 272
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.81 E-value=0.077 Score=48.26 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=50.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC--CCCC-CCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSA-KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGED--SGLP-SKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~-~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~--~~~~-~~sfDlVi 260 (280)
.+++|||+|.|.|.-+.++...+|.. .++.++.||..-++.-.....- ......|...|+.. +++| ...|++++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv--~t~~td~r~s~vt~dRl~lp~ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV--STEKTDWRASDVTEDRLSLPAADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc--ccccCCCCCCccchhccCCCccceeehhh
Confidence 78899999999999999999999986 5788888877555544433322 33344555555533 3343 23455555
Q ss_pred echhh
Q 048398 261 LSYVV 265 (280)
Q Consensus 261 ~~~vl 265 (280)
..+-|
T Consensus 191 ~~~eL 195 (484)
T COG5459 191 VLDEL 195 (484)
T ss_pred hhhhh
Confidence 44433
No 273
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.78 E-value=0.067 Score=48.92 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=55.3
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC-CCceeeE
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP-SKSFDVV 259 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~sfDlV 259 (280)
+.+|||.=+|+|.=++.++...+..+++.-|+||.+++..+.|+..| ...+...+..|+..+-.. ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N--~~~~~~v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN--SGEDAEVINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc--CcccceeecchHHHHHHhcCCCccEE
Confidence 78999999999998888887776669999999999999999999988 334455555665443111 2456665
No 274
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=0.18 Score=46.18 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=53.2
Q ss_pred CCCcEEEECCCCChhHHHHHhh----CC----CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCce
Q 048398 185 EIRDILDIGCSVGVSTKCLADK----FP----SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSF 256 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~----~p----~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sf 256 (280)
.+..+++||.|+|.++..+++. +| .+++.-|++||+..+.-+++++.. ...++|. ...+ .+|.+-.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~---~~~~~~~--~~~e-~~p~~~~ 150 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT---EDLIRWV--EWVE-DLPKKFP 150 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc---ccchhHH--HHHH-hccccCc
Confidence 5678999999999988887665 34 579999999999988888887654 2233332 1111 1344324
Q ss_pred eeEEechhhhhCC
Q 048398 257 DVVSLSYVVCLLS 269 (280)
Q Consensus 257 DlVi~~~vlh~l~ 269 (280)
-+|++|.+|--+|
T Consensus 151 ~i~~~NElfDAlP 163 (370)
T COG1565 151 GIVVSNELFDALP 163 (370)
T ss_pred eEEEechhhcccc
Confidence 5566777766555
No 275
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=94.72 E-value=0.15 Score=43.35 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=59.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC--CCCCCceeeEEec
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS--GLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~sfDlVi~~ 262 (280)
++.+||.||-|-|+..-.+.++-|..+ +-++..|..++..+...-.. .++|..+.+-.++. .++++.||-|+.-
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~e---k~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWRE---KENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhccccc---ccceEEEecchHhhhccccccCcceeEee
Confidence 889999999999999999998876655 56788999998887765332 56888888887764 2678899999865
Q ss_pred h
Q 048398 263 Y 263 (280)
Q Consensus 263 ~ 263 (280)
-
T Consensus 177 T 177 (271)
T KOG1709|consen 177 T 177 (271)
T ss_pred c
Confidence 3
No 276
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.47 E-value=0.074 Score=48.63 Aligned_cols=86 Identities=22% Similarity=0.113 Sum_probs=44.9
Q ss_pred CCCcEEEECCCCChhHHHHHhh--------C--------CCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCCe--EEEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADK--------F--------PSAKVTGLDLSPYFLAVAQLKEKKGG---PRKNPI--SWVH 243 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~--------~--------p~~~v~gvDisp~~l~~A~~~~~~~~---~~~~~v--~~~~ 243 (280)
+.-+|+|+||++|..++.+... + |..+|+--|+=.+=....=..+.... ....++ .-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 6779999999999988766442 1 23588999983332222111111100 001122 3344
Q ss_pred eCCCCCCCCCCceeeEEechhhhhCCC
Q 048398 244 AIGEDSGLPSKSFDVVSLSYVVCLLSN 270 (280)
Q Consensus 244 ~d~~~~~~~~~sfDlVi~~~vlh~l~d 270 (280)
+.+..-=+|+++.|++++.+.+|++..
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~ 122 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQ 122 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SS
T ss_pred chhhhccCCCCceEEEEEechhhhccc
Confidence 566543389999999999999999975
No 277
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.43 E-value=0.063 Score=45.47 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=34.4
Q ss_pred CCCcEEEECCCCChhHHHHHhh---C-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADK---F-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS 249 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~---~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~ 249 (280)
+|..|+++|.-.|..+...+.. + +.++|+|+|++...... ...+.. ...++|++++||..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~h-p~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESH-PMSPRITFIQGDSIDP 97 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSST
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhc-cccCceEEEECCCCCH
Confidence 8999999999999888766543 3 67899999996433221 222222 3457999999998653
No 278
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.33 E-value=0.091 Score=41.74 Aligned_cols=59 Identities=12% Similarity=0.210 Sum_probs=41.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--CCCCceeeEEechhhhhCCChh
Q 048398 211 KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--LPSKSFDVVSLSYVVCLLSNSE 272 (280)
Q Consensus 211 ~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~sfDlVi~~~vlh~l~d~~ 272 (280)
+|+|+||-+.+++.+++++.+. +...++++++.+=+.+. ++.+++|+++.|.. ++|--+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggD 61 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGD 61 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-T-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-
T ss_pred CEEEEECHHHHHHHHHHHHHhc-CCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCC
Confidence 6899999999999999999988 56678999998866654 34458999999864 677544
No 279
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=93.27 E-value=1.1 Score=38.54 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=53.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC---CCCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG---LPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~sfDlVi 260 (280)
++.+||-+|.++|.....+++.. |...|++++.||......-...+. ..||--+.+|+.... .--+.+|+|+
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----R~NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----RPNIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----STTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----CCceeeeeccCCChHHhhcccccccEEE
Confidence 67799999999999999998875 477999999999776655544443 368888889986521 1124799998
Q ss_pred ech
Q 048398 261 LSY 263 (280)
Q Consensus 261 ~~~ 263 (280)
+--
T Consensus 149 ~DV 151 (229)
T PF01269_consen 149 QDV 151 (229)
T ss_dssp EE-
T ss_pred ecC
Confidence 764
No 280
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.18 E-value=0.27 Score=45.25 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=37.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~ 227 (280)
+...++|+|.|.|.++..+.-.+ +..|.+||-|....+.|+.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 67899999999999999998777 8899999999777777765
No 281
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.06 E-value=0.68 Score=40.69 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=49.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC---------------C-----------CCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG---------------P-----------RKNP 238 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~---------------~-----------~~~~ 238 (280)
++.++||||||.-..-..-+..+ -.+|+..|.++.-.+..++-++..+ + ....
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 66799999999866533333222 3479999999998887666443221 0 0111
Q ss_pred e-EEEEeCCCCCC-CCC-----CceeeEEechhhhhCC
Q 048398 239 I-SWVHAIGEDSG-LPS-----KSFDVVSLSYVVCLLS 269 (280)
Q Consensus 239 v-~~~~~d~~~~~-~~~-----~sfDlVi~~~vlh~l~ 269 (280)
| +++.+|....+ +.. .+||+|++.++++..-
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~ 172 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC 172 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc
Confidence 3 47788887643 322 2499999999998654
No 282
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=92.80 E-value=0.3 Score=43.95 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhhhcCCCCc---EEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeC
Q 048398 169 GNWLQAIEKHHQQYAGEIRD---ILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAI 245 (280)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~---ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d 245 (280)
..|+..|.+++........+ =+|||+|+-..--.+...--+...+++|++...+..|..+..++ +....+..++..
T Consensus 83 ~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn-~lss~ikvV~~~ 161 (419)
T KOG2912|consen 83 LNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQN-NLSSLIKVVKVE 161 (419)
T ss_pred hhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccc-ccccceeeEEec
Confidence 34444444444332222233 37888877654333322222578999999999999999999988 677788887775
Q ss_pred CCCCC-------CCCCceeeEEechhhh
Q 048398 246 GEDSG-------LPSKSFDVVSLSYVVC 266 (280)
Q Consensus 246 ~~~~~-------~~~~sfDlVi~~~vlh 266 (280)
..+.- -++..||++.|+=-|.
T Consensus 162 ~~ktll~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912|consen 162 PQKTLLMDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred chhhcchhhhccCccceeeEEecCCchh
Confidence 43321 1234599999986553
No 283
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.79 E-value=0.07 Score=49.60 Aligned_cols=59 Identities=19% Similarity=0.077 Sum_probs=49.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCC-eEEEEeCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNP-ISWVHAIG 246 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~-v~~~~~d~ 246 (280)
.+..|.|+-||.|-+++.+++. +++|++-|++|.+++..+.++..| ...+. +.....|+
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lN-kv~~~~iei~Nmda 308 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLN-KVDPSAIEIFNMDA 308 (495)
T ss_pred CcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcccc-ccchhheeeecccH
Confidence 6778999999999999999988 799999999999999999999877 33333 66666654
No 284
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.51 E-value=0.92 Score=38.33 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=55.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC---CCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG---LPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~sfDlVi~ 261 (280)
++.+||=+|..+|.....+++-.+...++|++.||......-..+.+ ..|+--+.+|+.... .--...|+|++
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~----R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK----RPNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh----CCCceeeecccCCcHHhhhhcccccEEEE
Confidence 78899999999999999999988777899999999987766655543 357777788876521 11234788765
No 285
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=92.48 E-value=0.18 Score=45.78 Aligned_cols=76 Identities=17% Similarity=0.063 Sum_probs=59.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHH-------HHHHHHhcCCCCCCeEEEEeCCCCCCCC-CCce
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAV-------AQLKEKKGGPRKNPISWVHAIGEDSGLP-SKSF 256 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~-------A~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~sf 256 (280)
+++.|.|==-|||.+....+.. ++-|+|.||+-.++.. .+.|+++.+....-+.++.+|..+.++- .-.|
T Consensus 208 pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred CCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 6788999999999999999887 8999999998777662 2456666622333567889999887753 5579
Q ss_pred eeEEec
Q 048398 257 DVVSLS 262 (280)
Q Consensus 257 DlVi~~ 262 (280)
|.|+|-
T Consensus 286 DaIvcD 291 (421)
T KOG2671|consen 286 DAIVCD 291 (421)
T ss_pred eEEEeC
Confidence 999984
No 286
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.48 E-value=0.47 Score=37.81 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=33.2
Q ss_pred EECCCCC--hhHHHHH--hhCCCCeEEEEeCCHHHHHHHHHH--HHhcCCCCCCeEEEEeCC
Q 048398 191 DIGCSVG--VSTKCLA--DKFPSAKVTGLDLSPYFLAVAQLK--EKKGGPRKNPISWVHAIG 246 (280)
Q Consensus 191 DiGcGtG--~~a~~l~--~~~p~~~v~gvDisp~~l~~A~~~--~~~~~~~~~~v~~~~~d~ 246 (280)
|||+..| .....+. ...|..+|+++|.+|..++..+.+ +..+ .....+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~-~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN-DKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT-TTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc-CCCceEEEEEeec
Confidence 8999999 4444443 456788999999999999999988 5544 2223466665443
No 287
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=90.85 E-value=0.25 Score=46.60 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=59.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEe-CCCC--CCCC-CCceee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSA--KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHA-IGED--SGLP-SKSFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~--~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~-d~~~--~~~~-~~sfDl 258 (280)
.+..+.|+|.|.|.-..++...+++. .++.||.+..|......++... ... .-.++.. -+.. +|.+ ...||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~-~~~-g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDG-SHI-GEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcCh-hhc-CchhccccchhcccCCCCcccceee
Confidence 67889999999888777777767653 6999999999999998887652 011 1112222 1111 2332 345999
Q ss_pred EEechhhhhCCChh
Q 048398 259 VSLSYVVCLLSNSE 272 (280)
Q Consensus 259 Vi~~~vlh~l~d~~ 272 (280)
|++.+.+|++....
T Consensus 278 vi~ah~l~~~~s~~ 291 (491)
T KOG2539|consen 278 VICAHKLHELGSKF 291 (491)
T ss_pred EEeeeeeeccCCch
Confidence 99999999998755
No 288
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.82 E-value=0.1 Score=42.44 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCCeEEEEeCCCC--CCCCCCceeeEE
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG-PRKNPISWVHAIGED--SGLPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~-~~~~~v~~~~~d~~~--~~~~~~sfDlVi 260 (280)
.+++||++|.| +|..++.++..-|...|...|-+...++..++..-.|- ....++..+.-+... .......||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 56789999999 67777777877788899999999999988887654430 011222111111111 112345899999
Q ss_pred echhhh
Q 048398 261 LSYVVC 266 (280)
Q Consensus 261 ~~~vlh 266 (280)
|...+.
T Consensus 109 aADClF 114 (201)
T KOG3201|consen 109 AADCLF 114 (201)
T ss_pred eccchh
Confidence 987653
No 289
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.85 E-value=0.96 Score=39.83 Aligned_cols=64 Identities=13% Similarity=0.100 Sum_probs=43.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-----CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-----PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG 250 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-----p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~ 250 (280)
+...++|+|||.|.++..+++.. +...++.||-...-. .+-..+... .....++-+..|+.++.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~-~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKD-ESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhcc-CCCCceEEEEEEeeccc
Confidence 66789999999999999999988 456899999865322 222233322 11135666677776654
No 290
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=89.49 E-value=0.31 Score=43.08 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=31.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFL 222 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l 222 (280)
..++|||+|||.|...+.+.... ...+...|.+...+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecchhhe
Confidence 78999999999999999988774 37888888887777
No 291
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=89.31 E-value=4.8 Score=35.40 Aligned_cols=93 Identities=14% Similarity=0.073 Sum_probs=64.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCCeEEEEeCCCCC--------CCCCCc
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGG-PRKNPISWVHAIGEDS--------GLPSKS 255 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~-~~~~~v~~~~~d~~~~--------~~~~~s 255 (280)
....|+.+|||-=.-...+... ++.+++=+|. |.+++.=++.+.+.+ ....+.+++.+|+... ++..+.
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 3567999999877766655321 2578888888 788887777776541 1246788999998621 122233
Q ss_pred eeeEEechhhhhCCChhhhhhhhc
Q 048398 256 FDVVSLSYVVCLLSNSEHLSVERC 279 (280)
Q Consensus 256 fDlVi~~~vlh~l~d~~~~~~l~~ 279 (280)
--++++-.++.|++..+...+++.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~ 182 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAF 182 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHH
Confidence 458888999999998877665543
No 292
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.50 E-value=0.79 Score=41.53 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=51.1
Q ss_pred EEEECCCCChhHHHHHhhCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC-CCceeeEEechhhh
Q 048398 189 ILDIGCSVGVSTKCLADKFPSAK-VTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP-SKSFDVVSLSYVVC 266 (280)
Q Consensus 189 ILDiGcGtG~~a~~l~~~~p~~~-v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~sfDlVi~~~vlh 266 (280)
|+|+-||.|.++..+.+. +.+ +.++|+++.+++.-+.|... .++++|+.++... -..+|+++...-+.
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~--------~~~~~Di~~~~~~~~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN--------KVPFGDITKISPSDIPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC--------CCCccChhhhhhhhCCCcCEEEecCCCc
Confidence 689999999999999887 566 56799999988887777531 3456777665321 12479998776665
Q ss_pred hCC
Q 048398 267 LLS 269 (280)
Q Consensus 267 ~l~ 269 (280)
.+.
T Consensus 71 ~fS 73 (315)
T TIGR00675 71 PFS 73 (315)
T ss_pred ccc
Confidence 554
No 293
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=88.47 E-value=0.58 Score=41.86 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=52.1
Q ss_pred cEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC---CCCCceeeEEechh
Q 048398 188 DILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG---LPSKSFDVVSLSYV 264 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~sfDlVi~~~v 264 (280)
+++|+-||.|.+...+.+.+ ---+.++|+++.+.+.-+.|.. ....+|+.++. ++. .+|+++...-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~---------~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP---------EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT---------EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc---------ccccccccccccccccc-cceEEEeccC
Confidence 68999999999999999984 2358999999998888777753 57788887764 443 4999998877
Q ss_pred hhhCC
Q 048398 265 VCLLS 269 (280)
Q Consensus 265 lh~l~ 269 (280)
+.-+.
T Consensus 71 CQ~fS 75 (335)
T PF00145_consen 71 CQGFS 75 (335)
T ss_dssp -TTTS
T ss_pred CceEe
Confidence 66554
No 294
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=88.32 E-value=0.23 Score=42.29 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=61.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCC-------CCCCCCCcee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGE-------DSGLPSKSFD 257 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~-------~~~~~~~sfD 257 (280)
+.+..+|+--|.|..+..+.+..|..+++++|.+|.+-+.|+....+. ..+.+.-+.+++. +..+.++++|
T Consensus 43 ~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el--~~~~l~a~Lg~Fs~~~~l~~~~gl~~~~vD 120 (303)
T KOG2782|consen 43 RGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL--MHPTLKAVLGNFSYIKSLIADTGLLDVGVD 120 (303)
T ss_pred CCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh--cchhHHHHHhhhHHHHHHHHHhCCCcCCcc
Confidence 788999999999999999999999999999999999999888776432 2333333344433 3345567888
Q ss_pred eEEechhhhh
Q 048398 258 VVSLSYVVCL 267 (280)
Q Consensus 258 lVi~~~vlh~ 267 (280)
-|++-+.+..
T Consensus 121 GiLmDlGcSS 130 (303)
T KOG2782|consen 121 GILMDLGCSS 130 (303)
T ss_pred eEEeecCccc
Confidence 8887776643
No 295
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.54 E-value=0.23 Score=47.12 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=62.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----CCCCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSA-KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----LPSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~-~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~sfDlV 259 (280)
++.+|||.=|++|.-++..++..|+. +|++.|+++..++..+.|.+.| +..+.++-.+.|+..+- .....||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N-~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN-GVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc-CchhhcccccchHHHHHHhccccccccceE
Confidence 67899999999999999999888876 7999999999999999999888 56667777888875532 234679988
Q ss_pred Ee
Q 048398 260 SL 261 (280)
Q Consensus 260 i~ 261 (280)
-+
T Consensus 188 DL 189 (525)
T KOG1253|consen 188 DL 189 (525)
T ss_pred ec
Confidence 54
No 296
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=87.44 E-value=2.5 Score=39.61 Aligned_cols=76 Identities=20% Similarity=0.130 Sum_probs=59.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC---CCCCceeeEE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG---LPSKSFDVVS 260 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~sfDlVi 260 (280)
++.+|||+.+..|.=+..++.... ...|++.|.+..-+...+.|+... +..+...+..|...+| ++. +||-|+
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl--Gv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL--GVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh--CCCceEEEccCcccccccccCc-ccceee
Confidence 678999999999987666665542 458999999999999999999887 4566777778876654 444 899998
Q ss_pred ech
Q 048398 261 LSY 263 (280)
Q Consensus 261 ~~~ 263 (280)
+-.
T Consensus 318 LDA 320 (460)
T KOG1122|consen 318 LDA 320 (460)
T ss_pred ecC
Confidence 644
No 297
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=87.13 E-value=0.64 Score=41.83 Aligned_cols=85 Identities=21% Similarity=0.238 Sum_probs=53.2
Q ss_pred CCcEEEECCCCChhHHHHHhhC--------------------CCCeEEEEeCCHHHHHHHH--HHHHhc-----------
Q 048398 186 IRDILDIGCSVGVSTKCLADKF--------------------PSAKVTGLDLSPYFLAVAQ--LKEKKG----------- 232 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~--------------------p~~~v~gvDisp~~l~~A~--~~~~~~----------- 232 (280)
..+||.||.|-|.=..+++..+ +...|+.+|+.+..--+.+ ..+...
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3799999999986444444433 1248999999987543332 222211
Q ss_pred ----CCCCCCeEEEEeCCCCCCCCC-------CceeeEEechhhhhCCC
Q 048398 233 ----GPRKNPISWVHAIGEDSGLPS-------KSFDVVSLSYVVCLLSN 270 (280)
Q Consensus 233 ----~~~~~~v~~~~~d~~~~~~~~-------~sfDlVi~~~vlh~l~d 270 (280)
....-+++|.+.|+..+..++ .+.|+|...+.++++-.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs 215 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFS 215 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 012235789999987764321 24688888888776543
No 298
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.47 E-value=0.55 Score=44.56 Aligned_cols=75 Identities=20% Similarity=0.107 Sum_probs=54.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-------CCCCCcee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-------GLPSKSFD 257 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~sfD 257 (280)
....+|-+|-|.|.+...+...+|..++++++++|.+++.|+.++.-. ...+......|+.+. .-.+..||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~--q~~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFM--QSDRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchh--hhhhhhhhHhhchHHHHHHhhccccccCCc
Confidence 567899999999999999999999999999999999999999987432 112334444444321 11345688
Q ss_pred eEEe
Q 048398 258 VVSL 261 (280)
Q Consensus 258 lVi~ 261 (280)
+++.
T Consensus 373 vl~~ 376 (482)
T KOG2352|consen 373 VLMV 376 (482)
T ss_pred EEEE
Confidence 8764
No 299
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=85.20 E-value=2.6 Score=38.57 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=47.6
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC--CCceeeEEe
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP--SKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~--~~sfDlVi~ 261 (280)
++.+|+=+|+| .|..+..+++.. +++|+++|.++.-.+.|++.-.. .++... .....+ .+.||+|+.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd--------~~i~~~-~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGAD--------HVINSS-DSDALEAVKEIADAIID 235 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCc--------EEEEcC-CchhhHHhHhhCcEEEE
Confidence 67788888877 445777888866 69999999999988888876322 234433 111121 223999987
Q ss_pred chh
Q 048398 262 SYV 264 (280)
Q Consensus 262 ~~v 264 (280)
.-.
T Consensus 236 tv~ 238 (339)
T COG1064 236 TVG 238 (339)
T ss_pred CCC
Confidence 766
No 300
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=85.02 E-value=2.2 Score=41.09 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=55.0
Q ss_pred CCcEEEECCCCChhHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEe
Q 048398 186 IRDILDIGCSVGVSTKCLADK----FPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSL 261 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~----~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~ 261 (280)
...|+-+|.|-|-+.....+. ....++++++-+|.++-..+..--+ .-.++|+++..|...++-|..+.|++++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~--~W~~~Vtii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE--CWDNRVTIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh--hhcCeeEEEeccccccCCchhhccchHH
Confidence 557899999999766554433 2346899999999988766553222 2467899999999998766577998875
No 301
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.12 E-value=2 Score=38.90 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=39.7
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~ 227 (280)
.+.+||=+|+| .|..+...++.+...+|+.+|+++.-++.|++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 67899999999 68999999999977799999999999999998
No 302
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.67 E-value=2.8 Score=38.18 Aligned_cols=75 Identities=11% Similarity=-0.016 Sum_probs=55.0
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC---CCCceeeEEe
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSA-KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL---PSKSFDVVSL 261 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~-~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~sfDlVi~ 261 (280)
..+++|+-||.|.+...+... +. -+.++|++|.+++.-+.|... ..++..|+..... +...+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-------~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-------GDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-------CceeechHhhcChhhccccCCCEEEe
Confidence 458999999999999999888 44 478999999998888777542 3456666665432 1116899998
Q ss_pred chhhhhCC
Q 048398 262 SYVVCLLS 269 (280)
Q Consensus 262 ~~vlh~l~ 269 (280)
..-++.+.
T Consensus 74 GpPCQ~FS 81 (328)
T COG0270 74 GPPCQDFS 81 (328)
T ss_pred CCCCcchh
Confidence 77666554
No 303
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.33 E-value=2.5 Score=36.52 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=56.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhC----C-C-C---eEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF----P-S-A---KVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----- 250 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~----p-~-~---~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----- 250 (280)
..++++|+....|.|+..+.++. + . . .|+++|+-|. . -.+.|.-+++|+....
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-a------------PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-A------------PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-C------------ccCceEEeecccCCHhHHHHH
Confidence 67899999999999999998764 2 1 2 3999999643 1 1346778889987642
Q ss_pred ---CCCCceeeEEec-----hhhhhCCChhhhh
Q 048398 251 ---LPSKSFDVVSLS-----YVVCLLSNSEHLS 275 (280)
Q Consensus 251 ---~~~~sfDlVi~~-----~vlh~l~d~~~~~ 275 (280)
|...+.|+|+|- -.+|.++...+.+
T Consensus 108 i~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~q 140 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQ 140 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccccccHHHHHHHH
Confidence 445688999995 4578887765543
No 304
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=83.10 E-value=2.6 Score=41.30 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=31.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC-CeEEEEeCCHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS-AKVTGLDLSPY 220 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~-~~v~gvDisp~ 220 (280)
+...|||+||..|.|...+.+..|. .-|+|+||-|.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 7889999999999999999998875 46999999774
No 305
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.74 E-value=1.7 Score=40.25 Aligned_cols=82 Identities=20% Similarity=0.180 Sum_probs=56.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHH-------hcCCCCCCeEEEEeCCCCCCC---CCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEK-------KGGPRKNPISWVHAIGEDSGL---PSK 254 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~-------~~~~~~~~v~~~~~d~~~~~~---~~~ 254 (280)
+.....|+|.|.|.+...++.......-+|+++....-+.|..+.. ..|.....+..+++++.+-.. -..
T Consensus 192 ~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~ 271 (419)
T KOG3924|consen 192 PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQT 271 (419)
T ss_pred CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhh
Confidence 6778999999999999998887644567888887665555544322 121124567888888866431 133
Q ss_pred ceeeEEechhhh
Q 048398 255 SFDVVSLSYVVC 266 (280)
Q Consensus 255 sfDlVi~~~vlh 266 (280)
..++|+++++.-
T Consensus 272 eatvi~vNN~~F 283 (419)
T KOG3924|consen 272 EATVIFVNNVAF 283 (419)
T ss_pred cceEEEEecccC
Confidence 579999998753
No 306
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=82.51 E-value=1.5 Score=39.17 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=60.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCC-eEEEEeCCHHHHHHHHHHHHhc--CCCCCCeEEEEeCCCCC--CCCCCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSA-KVTGLDLSPYFLAVAQLKEKKG--GPRKNPISWVHAIGEDS--GLPSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~-~v~gvDisp~~l~~A~~~~~~~--~~~~~~v~~~~~d~~~~--~~~~~sfDlV 259 (280)
.++++|=||.|-|...+...+. +.. ++.-+|++...++..++.+... +-...+|....||+..+ ..+.++||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 7899999999999998888876 443 7999999999999998876532 12456899999997654 1346789999
Q ss_pred Eec
Q 048398 260 SLS 262 (280)
Q Consensus 260 i~~ 262 (280)
+.-
T Consensus 200 i~d 202 (337)
T KOG1562|consen 200 ITD 202 (337)
T ss_pred EEe
Confidence 864
No 307
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=82.32 E-value=14 Score=32.43 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=59.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC----CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC--CCCC-Ccee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS----AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS--GLPS-KSFD 257 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~----~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~--~~~~-~sfD 257 (280)
.+.+.+|+|.|+..-++.+.+.+.. .+++.+|+|...+....+.+... ...-.+.-+++|.+.. .+|. +.==
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~-y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE-YPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh-CCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 6889999999999988888777633 68999999998887655554333 1223455566665431 1222 2223
Q ss_pred eEEechhhhhCCChhhhhhh
Q 048398 258 VVSLSYVVCLLSNSEHLSVE 277 (280)
Q Consensus 258 lVi~~~vlh~l~d~~~~~~l 277 (280)
+++.-..+..+.+.++...+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl 176 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFL 176 (321)
T ss_pred EEEecccccCCChHHHHHHH
Confidence 44555667777777665544
No 308
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=82.18 E-value=7.3 Score=37.65 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=51.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC----CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC-CC-CCCceee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP----SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS-GL-PSKSFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p----~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~-~~-~~~sfDl 258 (280)
+...|.|.-||+|.+.....+... ...++|-+..+.+...|+.++..++...+......+|-... .+ ...+||+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 346899999999998876544321 24699999999999999998755411122333334443332 12 2456898
Q ss_pred EEech
Q 048398 259 VSLSY 263 (280)
Q Consensus 259 Vi~~~ 263 (280)
|+++-
T Consensus 297 v~~Np 301 (501)
T TIGR00497 297 VVSNP 301 (501)
T ss_pred EeecC
Confidence 88764
No 309
>PTZ00357 methyltransferase; Provisional
Probab=82.07 E-value=3.8 Score=40.96 Aligned_cols=75 Identities=9% Similarity=0.103 Sum_probs=50.5
Q ss_pred CcEEEECCCCChhHHHHHhhC----CCCeEEEEeCCHHHHHHHHHHHHhcCCC-------CCCeEEEEeCCCCCCCCC--
Q 048398 187 RDILDIGCSVGVSTKCLADKF----PSAKVTGLDLSPYFLAVAQLKEKKGGPR-------KNPISWVHAIGEDSGLPS-- 253 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~----p~~~v~gvDisp~~l~~A~~~~~~~~~~-------~~~v~~~~~d~~~~~~~~-- 253 (280)
..|+=+|+|-|-+.....+.. -..+|++|+-+|..+...+.+......- +++|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 468999999998665554442 2358999999977655555543221111 356999999998874331
Q ss_pred ---------CceeeEEe
Q 048398 254 ---------KSFDVVSL 261 (280)
Q Consensus 254 ---------~sfDlVi~ 261 (280)
+++|+||+
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 36999986
No 310
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=81.81 E-value=2.8 Score=38.46 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=39.1
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKE 229 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~ 229 (280)
...+|+=+||| .|.++..+++.+...+|+++|+++.-++.|++..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence 34489999999 6888899999987789999999999999998853
No 311
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.60 E-value=4.8 Score=35.54 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=52.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechh
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYV 264 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~v 264 (280)
++...+|+|...|.++..|.++ +..|+++|--+- .+ .+.. .+.|+....|+........+.|-.+|..|
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~m-a~----sL~d----tg~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPM-AQ----SLMD----TGQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred CCceeeecccCCCccchhhhhc--ceEEEEeccchh-hh----hhhc----ccceeeeeccCcccccCCCCCceEEeehh
Confidence 6788999999999999999998 899999997543 22 2222 35788888888887433566888888765
No 312
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=81.37 E-value=5.8 Score=36.89 Aligned_cols=86 Identities=22% Similarity=0.205 Sum_probs=54.0
Q ss_pred CCCcEEEECCCCCh----hHHHHHhhC---CCCeEEEEeC----CHHHHHHHHHHHHhcC-CCCCCeEEEE---eCCCCC
Q 048398 185 EIRDILDIGCSVGV----STKCLADKF---PSAKVTGLDL----SPYFLAVAQLKEKKGG-PRKNPISWVH---AIGEDS 249 (280)
Q Consensus 185 ~~~~ILDiGcGtG~----~a~~l~~~~---p~~~v~gvDi----sp~~l~~A~~~~~~~~-~~~~~v~~~~---~d~~~~ 249 (280)
+.-.|+|+|.|.|. +...|+.+- |..+|||++. +...++.+.+++.+.. ..+-..+|.. .+.+++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 56689999999997 333344332 5569999999 7888888888764331 0122334433 233333
Q ss_pred -----CCCCCceeeEEechhhhhCCC
Q 048398 250 -----GLPSKSFDVVSLSYVVCLLSN 270 (280)
Q Consensus 250 -----~~~~~sfDlVi~~~vlh~l~d 270 (280)
.+.++.+=+|.|.+.+||+.+
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~ 215 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLD 215 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhcc
Confidence 123444556667888899974
No 313
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.14 E-value=4.1 Score=30.48 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=39.8
Q ss_pred CCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----CCCCceeeEEech
Q 048398 194 CSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----LPSKSFDVVSLSY 263 (280)
Q Consensus 194 cGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~sfDlVi~~~ 263 (280)
||.|..+..+++.. .+.+|+.+|.++..++.++.. .+.++.||..+.. ..-.+.|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 56677777776554 245899999999887766543 2679999987643 1224577777653
No 314
>PRK10458 DNA cytosine methylase; Provisional
Probab=79.01 E-value=11 Score=36.15 Aligned_cols=79 Identities=10% Similarity=-0.036 Sum_probs=51.8
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC-------------
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP------------- 252 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~------------- 252 (280)
..+++|+-||.|.+...+...+ .--|.++|+++.+.+.-+.|.... .....+.+|+.++...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~~~~----p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANWYCD----PATHRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHcCCC----CccceeccChhhCccccccccchhhhhhh
Confidence 5689999999999999998873 235789999998887777765211 1233445565544210
Q ss_pred ----CCceeeEEechhhhhCC
Q 048398 253 ----SKSFDVVSLSYVVCLLS 269 (280)
Q Consensus 253 ----~~sfDlVi~~~vlh~l~ 269 (280)
-..+|+++...-+.-+.
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS 183 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFS 183 (467)
T ss_pred hhccCCCCCEEEEcCCCCccc
Confidence 11478888766555443
No 315
>PRK08339 short chain dehydrogenase; Provisional
Probab=78.73 E-value=13 Score=32.25 Aligned_cols=77 Identities=19% Similarity=0.069 Sum_probs=51.7
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C----C
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----~ 252 (280)
+.+++|=.|++.|. .+..+++. +++|+.+|.++..++...+.+... ...++.++.+|+.+.. + .
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARA--GADVILLSRNEENLKKAREKIKSE--SNVDVSYIVADLTKREDLERTVKELKN 82 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCCCHHHHHHHHHHHHh
Confidence 56788888887765 44444444 789999999988776666655432 2346888999987642 1 1
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-+..|+++.+...
T Consensus 83 ~g~iD~lv~nag~ 95 (263)
T PRK08339 83 IGEPDIFFFSTGG 95 (263)
T ss_pred hCCCcEEEECCCC
Confidence 1468988877654
No 316
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=77.08 E-value=16 Score=30.83 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=49.6
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
.+++||=+|.- +|.....+... .++|+.+|+.|.+-.. ..++|.|..+ ..++.+.+|+|+=--
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~----------lp~~v~Fr~~----~~~~~G~~DlivDlT 107 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGF----------LPNNVKFRNL----LKFIRGEVDLIVDLT 107 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhc----------CCCCccHhhh----cCCCCCceeEEEecc
Confidence 78899999965 78877777766 7899999999876442 3445666554 334567789988766
Q ss_pred hhhhCCC
Q 048398 264 VVCLLSN 270 (280)
Q Consensus 264 vlh~l~d 270 (280)
.+.-+.+
T Consensus 108 GlGG~~P 114 (254)
T COG4017 108 GLGGIEP 114 (254)
T ss_pred ccCCCCH
Confidence 6655543
No 317
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.77 E-value=8.5 Score=35.50 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=39.6
Q ss_pred CcEEEECCCCChhHHHHHhhCCCCeEEE---EeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC
Q 048398 187 RDILDIGCSVGVSTKCLADKFPSAKVTG---LDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS 249 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~p~~~v~g---vDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~ 249 (280)
..++++|||-|.++..++...+...++- +|-...-+..-+.....+ ...+.=+..|++++
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~---~~vi~R~riDI~dL 246 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKN---SLVIKRIRIDIEDL 246 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccC---cchhheeEeeHHhc
Confidence 6899999999999999999988877776 776655444433333322 12333444555444
No 318
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.62 E-value=5 Score=38.88 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=36.6
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLK 228 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~ 228 (280)
.+.+|+=+||| .|..++..++.. +++|+++|.++.-++.++..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc
Confidence 68899999999 577888888877 67999999999988887763
No 319
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=76.47 E-value=14 Score=31.57 Aligned_cols=76 Identities=13% Similarity=0.045 Sum_probs=49.8
Q ss_pred CCCcEEEECCCCC----hhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCC-CCCCCCCCceeeE
Q 048398 185 EIRDILDIGCSVG----VSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIG-EDSGLPSKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG----~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~sfDlV 259 (280)
+.+.|+++.|+-| .+++.++.+.-+.++++|-.++..+...++.+... +..+.++|+.++. ++.-..-...|++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~-~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA-GLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc-cccccceEEecCCHHHHHhhccCCCEE
Confidence 6788999976644 23444455555789999999988888888887765 3455679988874 3321111236766
Q ss_pred Ee
Q 048398 260 SL 261 (280)
Q Consensus 260 i~ 261 (280)
+.
T Consensus 120 vV 121 (218)
T PF07279_consen 120 VV 121 (218)
T ss_pred EE
Confidence 64
No 320
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=75.88 E-value=5.7 Score=36.73 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=36.7
Q ss_pred CCCcEEEECCCC-ChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 048398 185 EIRDILDIGCSV-GVSTKCLADKFPSAKVTGLDLSPYFLAVAQLK 228 (280)
Q Consensus 185 ~~~~ILDiGcGt-G~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~ 228 (280)
+..+||.+|||. |..+..+++.....+++++|.++..++.+++.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 567899999988 88889999887434699999999988887764
No 321
>PRK08703 short chain dehydrogenase; Provisional
Probab=75.66 E-value=18 Score=30.49 Aligned_cols=78 Identities=13% Similarity=-0.018 Sum_probs=47.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC---C--------
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG---L-------- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~---~-------- 251 (280)
++++||=.||+.|. +..+++.+ .+.+|++++.++..++.....+... ....+.++..|+.+.. +
T Consensus 5 ~~k~vlItG~sggi-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 5 SDKTILVTGASQGL-GEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA--GHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc--CCCCcceEEeeecccchHHHHHHHHHHH
Confidence 46789999975553 44433332 3679999999987666655555433 1234566777764321 0
Q ss_pred --CCCceeeEEechhh
Q 048398 252 --PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 --~~~sfDlVi~~~vl 265 (280)
-.+..|+|+.+...
T Consensus 82 ~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 82 EATQGKLDGIVHCAGY 97 (239)
T ss_pred HHhCCCCCEEEEeccc
Confidence 01457988877654
No 322
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=75.27 E-value=10 Score=26.76 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred CCCcEEEECCCCCh-hHHHHHhhC-CCCeEEEEeCC
Q 048398 185 EIRDILDIGCSVGV-STKCLADKF-PSAKVTGLDLS 218 (280)
Q Consensus 185 ~~~~ILDiGcGtG~-~a~~l~~~~-p~~~v~gvDis 218 (280)
.+++||=|||++|. ++..++..| -++..+|+-+.
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 67899999999997 443444443 46788888764
No 323
>PRK07063 short chain dehydrogenase; Provisional
Probab=75.21 E-value=18 Score=31.05 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=51.7
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.+++|=.|++.|. ++..+++. +++|+.+|.++..++...+.+... ....++.++.+|+.+.. +
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~--G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFARE--GAAVALADLDAALAERAAAAIARD-VAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc-cCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 56789988987664 33334444 789999999888777666665442 12346888899986632 1
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+..|+++.+...
T Consensus 83 ~~g~id~li~~ag~ 96 (260)
T PRK07063 83 AFGPLDVLVNNAGI 96 (260)
T ss_pred HhCCCcEEEECCCc
Confidence 11468998887654
No 324
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=75.20 E-value=12 Score=32.92 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=41.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhc
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKG 232 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~ 232 (280)
....|||-=+|+|....+.... +-..+|+|++++.++.+.+++...
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 7789999999999999998887 778999999999999999998754
No 325
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=75.19 E-value=18 Score=30.85 Aligned_cols=77 Identities=13% Similarity=-0.003 Sum_probs=50.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
++++||=.|++.|. +..+++.+ .+++|++++.++..++.....+... ..++.++.+|+.+.. + .
T Consensus 10 ~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA---GGAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 67889988865554 44443332 3789999999987766655555443 346889999986532 0 1
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-++.|.++.+...
T Consensus 86 ~~~id~vi~~ag~ 98 (256)
T PRK06124 86 HGRLDILVNNVGA 98 (256)
T ss_pred cCCCCEEEECCCC
Confidence 1457888877654
No 326
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=74.93 E-value=6.2 Score=30.76 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCCcEEEECCCCCh-hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC-CCceeeEEec
Q 048398 185 EIRDILDIGCSVGV-STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP-SKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~-~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~sfDlVi~~ 262 (280)
...+|++||-|.=. .+..|++. +..|+++|+.+. +. ...+.++..|+.+-.+. -...|+|++.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a------~~g~~~v~DDif~P~l~iY~~a~lIYSi 77 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KA------PEGVNFVVDDIFNPNLEIYEGADLIYSI 77 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S-----------------STTEE---SSS--HHHHTTEEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------cc------ccCcceeeecccCCCHHHhcCCcEEEEe
Confidence 56699999998765 55666666 689999999877 11 13578999999875432 1247999887
Q ss_pred hhhhhC
Q 048398 263 YVVCLL 268 (280)
Q Consensus 263 ~vlh~l 268 (280)
.--.++
T Consensus 78 RPP~El 83 (127)
T PF03686_consen 78 RPPPEL 83 (127)
T ss_dssp S--TTS
T ss_pred CCChHH
Confidence 654443
No 327
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=74.83 E-value=13 Score=29.96 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=24.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLS 218 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDis 218 (280)
-..-|||+|=|.|..=-.+.+.+|+-+|+.+|-.
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 4578999999999999999999999999999974
No 328
>PRK05867 short chain dehydrogenase; Provisional
Probab=74.69 E-value=17 Score=31.08 Aligned_cols=78 Identities=13% Similarity=-0.005 Sum_probs=52.6
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.+++|=.|++.|. .+..+++. +.+|++++.++..++.....+... ..++.++.+|+.+.. +
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEA--GAQVAIAARHLDALEKLADEIGTS---GGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhc---CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 56789999987665 34444444 789999999987777666555543 246788888886532 0
Q ss_pred CCCceeeEEechhhhh
Q 048398 252 PSKSFDVVSLSYVVCL 267 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh~ 267 (280)
.-++.|+++.+.....
T Consensus 83 ~~g~id~lv~~ag~~~ 98 (253)
T PRK05867 83 ELGGIDIAVCNAGIIT 98 (253)
T ss_pred HhCCCCEEEECCCCCC
Confidence 0146899998766543
No 329
>PRK06172 short chain dehydrogenase; Provisional
Probab=74.58 E-value=19 Score=30.66 Aligned_cols=76 Identities=13% Similarity=0.011 Sum_probs=50.7
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.++||=.|++.|. ++..+++. +++|+.++.++..++...+.+... ..++.++.+|+.+.. +
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFARE--GAKVVVADRDAAGGEETVALIREA---GGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 56789999976554 33334444 679999999988776666655443 346888999987532 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+++|+|+.+...
T Consensus 81 ~~g~id~li~~ag~ 94 (253)
T PRK06172 81 AYGRLDYAFNNAGI 94 (253)
T ss_pred HhCCCCEEEECCCC
Confidence 01357999987654
No 330
>PRK07102 short chain dehydrogenase; Provisional
Probab=73.64 E-value=16 Score=30.96 Aligned_cols=75 Identities=15% Similarity=0.019 Sum_probs=46.0
Q ss_pred CcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC-----C--CCcee
Q 048398 187 RDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL-----P--SKSFD 257 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~sfD 257 (280)
++|+=.|++. .++..+++.+ .+.+|+++|.++.-.+...+.+... ...++.++.+|+.+..- . ...+|
T Consensus 2 ~~vlItGas~-giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIGATS-DIARACARRYAAAGARLYLAARDVERLERLADDLRAR--GAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEcCCc-HHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh--cCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 3678777554 4444443333 2679999999887665544444333 23578999999876420 0 12479
Q ss_pred eEEechh
Q 048398 258 VVSLSYV 264 (280)
Q Consensus 258 lVi~~~v 264 (280)
+++.+..
T Consensus 79 ~vv~~ag 85 (243)
T PRK07102 79 IVLIAVG 85 (243)
T ss_pred EEEECCc
Confidence 8887643
No 331
>PRK07677 short chain dehydrogenase; Provisional
Probab=73.58 E-value=20 Score=30.56 Aligned_cols=73 Identities=16% Similarity=0.087 Sum_probs=47.2
Q ss_pred CcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------CC
Q 048398 187 RDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L---------PS 253 (280)
Q Consensus 187 ~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~ 253 (280)
+++|=.|++.|. ++..+++. +++|++++.++..++...+.+... ..++.++.+|+.+.. + .-
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEE--GANVVITGRTKEKLEEAKLEIEQF---PGQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 568878886664 33334443 679999999887766665555443 346888999986531 0 11
Q ss_pred CceeeEEechh
Q 048398 254 KSFDVVSLSYV 264 (280)
Q Consensus 254 ~sfDlVi~~~v 264 (280)
++.|+|+.+..
T Consensus 77 ~~id~lI~~ag 87 (252)
T PRK07677 77 GRIDALINNAA 87 (252)
T ss_pred CCccEEEECCC
Confidence 45799887654
No 332
>PRK07904 short chain dehydrogenase; Provisional
Probab=73.48 E-value=16 Score=31.43 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=49.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC---CCCeEEEEeCCHHH-HHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF---PSAKVTGLDLSPYF-LAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L---- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~---p~~~v~gvDisp~~-l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 251 (280)
.+++||=.||+.|. +..+++.+ .+.+|+.++.++.- ++...+.+... ...+++++.+|+.+.. +
T Consensus 7 ~~~~vlItGas~gi-G~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~--~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSEI-GLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA--GASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcHH-HHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc--CCCceEEEEecCCChHHHHHHHHHHH
Confidence 67789999987665 33333322 24799999988764 55555555443 2347899999986532 1
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
..+..|+++.+...
T Consensus 84 ~~g~id~li~~ag~ 97 (253)
T PRK07904 84 AGGDVDVAIVAFGL 97 (253)
T ss_pred hcCCCCEEEEeeec
Confidence 12468988866544
No 333
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=73.27 E-value=11 Score=32.59 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=46.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS 249 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~ 249 (280)
...-|.+||.|.|..++.+.... ..++..+++++.++.-.+...+.. ..+....++|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ~L~EAa---~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQMLSEAA---PGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHHHHhhcC---CcceEEecccccee
Confidence 45679999999999999999874 458899999988887776655543 34666777776443
No 334
>PRK07890 short chain dehydrogenase; Provisional
Probab=72.72 E-value=23 Score=30.12 Aligned_cols=76 Identities=12% Similarity=-0.086 Sum_probs=49.8
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L--------- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~--------- 251 (280)
..++||=.|++.|. ++..+++. +++|+++|.++.-++.....+... ..++.++.+|+.+.. +
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARA--GADVVLAARTAERLDEVAAEIDDL---GRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHh---CCceEEEecCCCCHHHHHHHHHHHHH
Confidence 56788878876554 33344444 789999999987766655555433 346888999986531 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+..|+|+.+...
T Consensus 79 ~~g~~d~vi~~ag~ 92 (258)
T PRK07890 79 RFGRVDALVNNAFR 92 (258)
T ss_pred HcCCccEEEECCcc
Confidence 01457999887654
No 335
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=72.58 E-value=4.7 Score=38.63 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHhhhhc-----CCCCcEEEECCCCChhHHHHHhhCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCC
Q 048398 164 NDVMRGNWLQAIEKHHQQYA-----GEIRDILDIGCSVGVSTKCLADKFPSA--KVTGLDLSPYFLAVAQLKEKKGGPRK 236 (280)
Q Consensus 164 ~~~l~~~~~~~l~~~~~~~~-----~~~~~ILDiGcGtG~~a~~l~~~~p~~--~v~gvDisp~~l~~A~~~~~~~~~~~ 236 (280)
...-...|...+..+..-.. ...++|+|+..|.|.++.+|.+. |-. +|+-++ .+..+.+--++ |
T Consensus 339 F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~-~~ntL~vIydR-----G-- 409 (506)
T PF03141_consen 339 FKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDD-PVWVMNVVPVS-GPNTLPVIYDR-----G-- 409 (506)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccC-CceEEEecccC-CCCcchhhhhc-----c--
Confidence 33444555555555542211 16789999999999999999875 221 333331 22222222111 1
Q ss_pred CCeEEEEeCCCCCCCCCCceeeEEechhhhhCCCh
Q 048398 237 NPISWVHAIGEDSGLPSKSFDVVSLSYVVCLLSNS 271 (280)
Q Consensus 237 ~~v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d~ 271 (280)
-|-..|.=.+.++.=+.+||+|++..+|..+.+.
T Consensus 410 -LIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~r 443 (506)
T PF03141_consen 410 -LIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDR 443 (506)
T ss_pred -cchhccchhhccCCCCcchhheehhhhhhhhccc
Confidence 1222232234444335689999999999887653
No 336
>PRK07062 short chain dehydrogenase; Provisional
Probab=72.21 E-value=22 Score=30.49 Aligned_cols=79 Identities=16% Similarity=0.021 Sum_probs=51.7
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L--------- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~--------- 251 (280)
..+++|=.|++.|. ++..+++. +++|++++.++.-++.+.+.+... ....++.++.+|+.+.. +
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEA--GASVAICGRDEERLASAEARLREK-FPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHhh-CCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 56789989987665 33334443 789999999987777666555433 12246778888886642 0
Q ss_pred CCCceeeEEechhhh
Q 048398 252 PSKSFDVVSLSYVVC 266 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh 266 (280)
.-+..|+++.+..+.
T Consensus 84 ~~g~id~li~~Ag~~ 98 (265)
T PRK07062 84 RFGGVDMLVNNAGQG 98 (265)
T ss_pred hcCCCCEEEECCCCC
Confidence 124689988876543
No 337
>PRK06125 short chain dehydrogenase; Provisional
Probab=71.69 E-value=25 Score=30.06 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=50.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-CCCce
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-PSKSF 256 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~sf 256 (280)
..+++|=.|++.|. +..+++.+ .+++|++++.++..++.....+... ...++.++.+|+.+.. + .-++.
T Consensus 6 ~~k~vlItG~~~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 6 AGKRVLITGASKGI-GAAAAEAFAAEGCHLHLVARDADALEALAADLRAA--HGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 45788888876553 33333222 2779999999988777666655543 2346788888886531 1 12468
Q ss_pred eeEEechhh
Q 048398 257 DVVSLSYVV 265 (280)
Q Consensus 257 DlVi~~~vl 265 (280)
|+++.+...
T Consensus 83 d~lv~~ag~ 91 (259)
T PRK06125 83 DILVNNAGA 91 (259)
T ss_pred CEEEECCCC
Confidence 998877654
No 338
>PRK09291 short chain dehydrogenase; Provisional
Probab=71.52 E-value=21 Score=30.37 Aligned_cols=75 Identities=12% Similarity=0.005 Sum_probs=46.6
Q ss_pred CcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----CCCCceeeEE
Q 048398 187 RDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----LPSKSFDVVS 260 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~sfDlVi 260 (280)
++||=.|++.|. +..+++.+ .+++|++++.++...+......... ..++.++.+|+.+.. .-....|+|+
T Consensus 3 ~~vlVtGasg~i-G~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSGF-GREVALRLARKGHNVIAGVQIAPQVTALRAEAARR---GLALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 468878875544 44443332 3789999998877665555444433 346888899987632 1123689998
Q ss_pred echhh
Q 048398 261 LSYVV 265 (280)
Q Consensus 261 ~~~vl 265 (280)
.+...
T Consensus 79 ~~ag~ 83 (257)
T PRK09291 79 NNAGI 83 (257)
T ss_pred ECCCc
Confidence 87543
No 339
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=71.24 E-value=8.1 Score=34.96 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=32.0
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCC-eEEEEeCCHHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSA-KVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~-~v~gvDisp~~l~~A~~ 227 (280)
++.+||=+||| .|..+..+++.. ++ +|+++|.++.-++.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH
Confidence 46688888875 456777777776 55 79999999988887765
No 340
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.23 E-value=23 Score=31.83 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=64.4
Q ss_pred CCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCC-CCCCeEEEEeCCCCCC---------CCCC
Q 048398 186 IRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGP-RKNPISWVHAIGEDSG---------LPSK 254 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~-~~~~v~~~~~d~~~~~---------~~~~ 254 (280)
...|+-+|||-=. +...-.+| +.+|+-+|+ |+.++.=++.+.+.++ ...+++++..|+.+.. +..+
T Consensus 93 ~~qvViLgaGLDT--RayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLDT--RAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEecccccc--ceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 5789999997544 33332344 578999998 8988887777776522 2237899999998432 2233
Q ss_pred ceeeEEechhhhhCCChhhhhhhhc
Q 048398 255 SFDVVSLSYVVCLLSNSEHLSVERC 279 (280)
Q Consensus 255 sfDlVi~~~vlh~l~d~~~~~~l~~ 279 (280)
.-=++++-.++.+++.++....+.+
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~ 194 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSR 194 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHH
Confidence 4568899999999999888776654
No 341
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=70.51 E-value=14 Score=34.42 Aligned_cols=44 Identities=20% Similarity=0.167 Sum_probs=32.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEK 230 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~ 230 (280)
+..+||-|..|-....-.+.+ . -.+|++||+||.++...+-+..
T Consensus 35 ~~d~vl~ItSaG~N~L~yL~~-~-P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALDYLLA-G-PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCeEEEEccCCchHHHHHhc-C-CceEEEEeCCHHHHHHHHHHHH
Confidence 677899998665554444443 3 4799999999999888776554
No 342
>PRK06949 short chain dehydrogenase; Provisional
Probab=69.91 E-value=29 Score=29.46 Aligned_cols=77 Identities=17% Similarity=0.006 Sum_probs=49.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L---------P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 252 (280)
..++||=.|++ |..+..+++.+ .+++|++++.++..++.....+... ..++.++.+|+.+.. + .
T Consensus 8 ~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 8 EGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE---GGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 56788888844 44444444433 3679999999988776666555433 346788889886531 0 1
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
.+..|+|+.+...
T Consensus 84 ~~~~d~li~~ag~ 96 (258)
T PRK06949 84 AGTIDILVNNSGV 96 (258)
T ss_pred cCCCCEEEECCCC
Confidence 1357988887654
No 343
>PRK05876 short chain dehydrogenase; Provisional
Probab=69.72 E-value=26 Score=30.66 Aligned_cols=76 Identities=17% Similarity=0.016 Sum_probs=49.9
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L--------- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~--------- 251 (280)
..+++|=.|++.|. ++..+++. +++|+.+|.++..++...+.+... ..++.++.+|+.+.. +
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~--G~~Vv~~~r~~~~l~~~~~~l~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARR--GARVVLGDVDKPGLRQAVNHLRAE---GFDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 56778888877664 33344444 679999999887776665555433 346788889986632 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+..|+++.+..+
T Consensus 80 ~~g~id~li~nAg~ 93 (275)
T PRK05876 80 LLGHVDVVFSNAGI 93 (275)
T ss_pred HcCCCCEEEECCCc
Confidence 11357998887665
No 344
>PRK05854 short chain dehydrogenase; Provisional
Probab=69.72 E-value=29 Score=31.06 Aligned_cols=80 Identities=14% Similarity=-0.030 Sum_probs=53.0
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------C--
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------L-- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~-- 251 (280)
.++++|=.|++.|+ .+..|++. +++|+.++.++.-.+.+.+.+... ....++.++.+|+.+.. +
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~-~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAA--GAEVILPVRNRAKGEAAVAAIRTA-VPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56788888887665 33444444 789999999887666666555433 12346889999987642 0
Q ss_pred CCCceeeEEechhhhh
Q 048398 252 PSKSFDVVSLSYVVCL 267 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh~ 267 (280)
..+..|+++.+.....
T Consensus 90 ~~~~iD~li~nAG~~~ 105 (313)
T PRK05854 90 EGRPIHLLINNAGVMT 105 (313)
T ss_pred hCCCccEEEECCcccc
Confidence 1246899998876543
No 345
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.46 E-value=29 Score=29.28 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=48.1
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
+.+++|=.|++.|. +..+++.+ .+.+|+++|.++.-++.+.+.+... ..++.++++|+.+.. +.
T Consensus 4 ~~~~~lItG~~g~i-G~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 4 KDKVIVITGGAQGL-GRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL---GTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789988875554 33333222 2679999999987666665555433 346788888876531 00
Q ss_pred CCceeeEEechh
Q 048398 253 SKSFDVVSLSYV 264 (280)
Q Consensus 253 ~~sfDlVi~~~v 264 (280)
-+.+|+|+.+..
T Consensus 80 ~~~id~vi~~ag 91 (253)
T PRK08217 80 FGQLNGLINNAG 91 (253)
T ss_pred cCCCCEEEECCC
Confidence 145899987755
No 346
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=69.00 E-value=12 Score=33.60 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=36.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEK 230 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~ 230 (280)
.+.+|+-||.|-......+.+. -++|.++|++|..|+.-+-++.
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~--Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRA--PARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcC--CceeEEEeCCHHHHHHHHHHHH
Confidence 6778999999977777777766 5799999999999988776654
No 347
>PRK07035 short chain dehydrogenase; Provisional
Probab=68.88 E-value=29 Score=29.49 Aligned_cols=75 Identities=13% Similarity=-0.025 Sum_probs=49.2
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.++||=.|++.|. ++..+++. +.+|++++.++..++...+.+... ..++.++.+|+.+.. +
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQ--GAHVIVSSRKLDGCQAVADAIVAA---GGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56788888888775 33334444 679999999887766655555433 345778888876532 0
Q ss_pred CCCceeeEEechh
Q 048398 252 PSKSFDVVSLSYV 264 (280)
Q Consensus 252 ~~~sfDlVi~~~v 264 (280)
.-++.|+++.+..
T Consensus 82 ~~~~id~li~~ag 94 (252)
T PRK07035 82 RHGRLDILVNNAA 94 (252)
T ss_pred HcCCCCEEEECCC
Confidence 0135899887664
No 348
>PRK07454 short chain dehydrogenase; Provisional
Probab=68.61 E-value=32 Score=29.01 Aligned_cols=78 Identities=12% Similarity=-0.066 Sum_probs=49.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
+.+++|=.|+ +|.++..+++.+ .+.+|++++.++.-.......+... ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST---GVKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567888885 455444444433 2679999999887665554444432 357889999987642 11
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
-++.|+++.+....
T Consensus 81 ~~~id~lv~~ag~~ 94 (241)
T PRK07454 81 FGCPDVLINNAGMA 94 (241)
T ss_pred cCCCCEEEECCCcc
Confidence 13579998776553
No 349
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.56 E-value=30 Score=29.12 Aligned_cols=78 Identities=13% Similarity=-0.021 Sum_probs=49.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
..+++|=.|+ +|.++..+++.+ .+.+|++++.++...+.....+... ..++.++.+|+.+.. +.
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY---GVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567888885 555555554443 3779999999887665544444332 347888899986532 00
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
.+..|+|+.+....
T Consensus 82 ~~~id~vi~~ag~~ 95 (239)
T PRK07666 82 LGSIDILINNAGIS 95 (239)
T ss_pred cCCccEEEEcCccc
Confidence 13579999876543
No 350
>PRK07326 short chain dehydrogenase; Provisional
Probab=68.53 E-value=28 Score=29.12 Aligned_cols=76 Identities=16% Similarity=-0.019 Sum_probs=47.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
..++||=+|+ +|.++..+++.+ .+.+|++++.++.........+... .++.++.+|+.+.. +.
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK----GNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc----CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3567888885 555555554433 3678999999887665554444321 46888999986531 10
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-+.+|+|+.+...
T Consensus 80 ~~~~d~vi~~ag~ 92 (237)
T PRK07326 80 FGGLDVLIANAGV 92 (237)
T ss_pred cCCCCEEEECCCC
Confidence 1357888876543
No 351
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=68.32 E-value=31 Score=29.52 Aligned_cols=77 Identities=16% Similarity=0.013 Sum_probs=50.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L---------P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~---------~ 252 (280)
+.+++|=.|++ |..+..+++.+ .+++|+.++.++..++.....+... ..++.++.+|+.+.. + .
T Consensus 11 ~~k~ilItGa~-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~---~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 11 SGKTALVTGGS-RGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL---GIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56788888854 44455544443 2679999999887776666555433 346788999987632 1 0
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
.++.|.|+.+...
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 1358998877654
No 352
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.03 E-value=19 Score=27.68 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=44.6
Q ss_pred CCCcEEEECCCCCh-hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC-CCceeeEEec
Q 048398 185 EIRDILDIGCSVGV-STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP-SKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcGtG~-~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~sfDlVi~~ 262 (280)
..++|+++|-|-=. .+..|+++ ++.++++|+.+. + ....++++..|+.+-.+. -...|+|.+.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~-------~------a~~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK-------T------APEGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc-------c------CcccceEEEccCCCccHHHhhCccceeec
Confidence 56699999987654 45556666 689999999865 1 124688999999885432 1236887764
Q ss_pred h
Q 048398 263 Y 263 (280)
Q Consensus 263 ~ 263 (280)
-
T Consensus 78 R 78 (129)
T COG1255 78 R 78 (129)
T ss_pred C
Confidence 3
No 353
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=68.00 E-value=31 Score=29.69 Aligned_cols=77 Identities=13% Similarity=0.022 Sum_probs=52.5
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
..+++|=.|++.|. ++..+++. +++|+.++.++..++.....+... ..++.++.+|+.+.. +
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~--G~~vv~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKA--GATIVFNDINQELVDKGLAAYREL---GIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 56789988987765 33344444 789999999988777666666543 346888999986532 0
Q ss_pred CCCceeeEEechhhh
Q 048398 252 PSKSFDVVSLSYVVC 266 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh 266 (280)
.-++.|+++.+....
T Consensus 84 ~~~~id~li~~ag~~ 98 (265)
T PRK07097 84 EVGVIDILVNNAGII 98 (265)
T ss_pred hCCCCCEEEECCCCC
Confidence 114689999877653
No 354
>PRK05866 short chain dehydrogenase; Provisional
Probab=67.28 E-value=31 Score=30.46 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=50.2
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
..++||=.|++.|. ++..+++. +++|++++.++..++...+.+... ..++.++.+|+.+.. +
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~--G~~Vi~~~R~~~~l~~~~~~l~~~---~~~~~~~~~Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARR--GATVVAVARREDLLDAVADRITRA---GGDAMAVPCDLSDLDAVDALVADVEK 113 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45778888876654 33334443 689999999987776665555433 246788899987632 0
Q ss_pred CCCceeeEEechhhh
Q 048398 252 PSKSFDVVSLSYVVC 266 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh 266 (280)
.-+..|+++.+....
T Consensus 114 ~~g~id~li~~AG~~ 128 (293)
T PRK05866 114 RIGGVDILINNAGRS 128 (293)
T ss_pred HcCCCCEEEECCCCC
Confidence 123689999876543
No 355
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=66.80 E-value=40 Score=33.07 Aligned_cols=85 Identities=11% Similarity=0.086 Sum_probs=62.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhC---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CCCCce
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF---PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LPSKSF 256 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~---p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~sf 256 (280)
.+++||=-| |+|..+..+.+.. .-.+++.+|.++..+-.-...+... -...++.+..||..+.. +..-+.
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~-~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK-FPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh-CCCcceEEEecccccHHHHHHHHhcCCC
Confidence 677787665 6677666665543 2358999999999888877777653 12467899999998753 445578
Q ss_pred eeEEechhhhhCCCh
Q 048398 257 DVVSLSYVVCLLSNS 271 (280)
Q Consensus 257 DlVi~~~vlh~l~d~ 271 (280)
|+|+-...+-|+|--
T Consensus 327 d~VfHAAA~KHVPl~ 341 (588)
T COG1086 327 DIVFHAAALKHVPLV 341 (588)
T ss_pred ceEEEhhhhccCcch
Confidence 999999999999853
No 356
>PRK07478 short chain dehydrogenase; Provisional
Probab=66.69 E-value=37 Score=28.93 Aligned_cols=76 Identities=14% Similarity=0.011 Sum_probs=49.9
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.+++|=.|++.|. ++..+++. +++|+.++.++.-++...+.+... ..++.++.+|+.+.. +
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFARE--GAKVVVGARRQAELDQLVAEIRAE---GGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45678877776554 33334443 679999999888777666655543 346888889986632 1
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+..|+++.+...
T Consensus 80 ~~~~id~li~~ag~ 93 (254)
T PRK07478 80 RFGGLDIAFNNAGT 93 (254)
T ss_pred hcCCCCEEEECCCC
Confidence 12368999877654
No 357
>PRK06914 short chain dehydrogenase; Provisional
Probab=66.66 E-value=35 Score=29.54 Aligned_cols=77 Identities=16% Similarity=-0.002 Sum_probs=47.3
Q ss_pred CCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----C-----CC
Q 048398 186 IRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----L-----PS 253 (280)
Q Consensus 186 ~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~-----~~ 253 (280)
.+++|=.|++.|. ++..+++. +.+|++++-++..++......... +...++.++.+|+.+.. + .-
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 79 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKK--GYLVIATMRNPEKQENLLSQATQL-NLQQNIKVQQLDVTDQNSIHNFQLVLKEI 79 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHHHHhc-CCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence 4568888865554 22333443 789999998887666554444332 12357889999987632 0 01
Q ss_pred CceeeEEechhh
Q 048398 254 KSFDVVSLSYVV 265 (280)
Q Consensus 254 ~sfDlVi~~~vl 265 (280)
++.|.|+.+...
T Consensus 80 ~~id~vv~~ag~ 91 (280)
T PRK06914 80 GRIDLLVNNAGY 91 (280)
T ss_pred CCeeEEEECCcc
Confidence 457888876543
No 358
>PRK08267 short chain dehydrogenase; Provisional
Probab=66.23 E-value=26 Score=30.00 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=47.1
Q ss_pred CcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC------
Q 048398 187 RDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP------ 252 (280)
Q Consensus 187 ~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~------ 252 (280)
+++|=.|++.|. ++..+++. +.+|++++.++..++....... ..++.++++|+.+.. +.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 74 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE--GWRVGAYDINEAGLAALAAELG-----AGNAWTGALDVTDRAAWDAALADFAAAT 74 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 357778876543 33334444 6899999998876665544332 246889999987632 10
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
.+++|+|+.+....
T Consensus 75 ~~~id~vi~~ag~~ 88 (260)
T PRK08267 75 GGRLDVLFNNAGIL 88 (260)
T ss_pred CCCCCEEEECCCCC
Confidence 35689998876654
No 359
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.01 E-value=32 Score=30.91 Aligned_cols=76 Identities=13% Similarity=-0.021 Sum_probs=58.8
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----------C
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----------L 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----------~ 251 (280)
.+..||==|.|.|. .+..++++ +++++..|+++.......+..++. +++....+|+.+.. -
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~----g~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKI----GEAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhc----CceeEEEecCCCHHHHHHHHHHHHH
Confidence 67789988999885 66777777 779999999999888888888765 27888889986632 1
Q ss_pred CCCceeeEEechhhh
Q 048398 252 PSKSFDVVSLSYVVC 266 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh 266 (280)
.-+..|+++.+..+-
T Consensus 111 e~G~V~ILVNNAGI~ 125 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIV 125 (300)
T ss_pred hcCCceEEEeccccc
Confidence 245789999886654
No 360
>PRK06194 hypothetical protein; Provisional
Probab=65.25 E-value=33 Score=29.79 Aligned_cols=78 Identities=13% Similarity=-0.045 Sum_probs=48.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C----C-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L----P----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~----~----- 252 (280)
+.++||=.|++.| .+..+++.+ .+++|+.+|.++..++.....+... ..++.++.+|+.+.. + .
T Consensus 5 ~~k~vlVtGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~ 80 (287)
T PRK06194 5 AGKVAVITGAASG-FGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ---GAEVLGVRTDVSDAAQVEALADAALER 80 (287)
T ss_pred CCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567887775544 344433322 2789999999877666555544432 346788999986631 1 0
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
.+..|+|+.+..+.
T Consensus 81 ~g~id~vi~~Ag~~ 94 (287)
T PRK06194 81 FGAVHLLFNNAGVG 94 (287)
T ss_pred cCCCCEEEECCCCC
Confidence 13579999877653
No 361
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=65.07 E-value=18 Score=34.09 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=32.6
Q ss_pred CCCcEEEECCCC-ChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 048398 185 EIRDILDIGCSV-GVSTKCLADKFPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcGt-G~~a~~l~~~~p~~~v~gvDisp~~l~~A~~ 227 (280)
.+++|+=+|||. |.....+++.+ +++|+.+|.+|.-...|+.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh
Confidence 688999999995 55555566655 7799999999887766654
No 362
>PRK09072 short chain dehydrogenase; Provisional
Probab=65.06 E-value=38 Score=29.07 Aligned_cols=76 Identities=17% Similarity=0.082 Sum_probs=49.6
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC---------C
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL---------P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~---------~ 252 (280)
+.+++|=.|++.|. ++..+++. +.+|++++.++..+......+ .. ..++.++.+|+.+..- .
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~---~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAA--GARLLLVGRNAEKLEALAARL-PY---PGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH-hc---CCceEEEEccCCCHHHHHHHHHHHHh
Confidence 45678888877654 33344444 789999999987766655544 22 3478899999876420 0
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
.+..|+++.+....
T Consensus 78 ~~~id~lv~~ag~~ 91 (263)
T PRK09072 78 MGGINVLINNAGVN 91 (263)
T ss_pred cCCCCEEEECCCCC
Confidence 14579998876543
No 363
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.49 E-value=14 Score=33.50 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=33.8
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLK 228 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~ 228 (280)
++.++.=+|+| .|.....-++.....+++|+|+++.-.+.|++.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 56778888876 466666666666567999999999999888764
No 364
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=64.48 E-value=32 Score=32.23 Aligned_cols=71 Identities=27% Similarity=0.156 Sum_probs=46.2
Q ss_pred CcEEEECCC-CChhHHH-HHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C-C-CCceeeEEe
Q 048398 187 RDILDIGCS-VGVSTKC-LADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L-P-SKSFDVVSL 261 (280)
Q Consensus 187 ~~ILDiGcG-tG~~a~~-l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~-~-~~sfDlVi~ 261 (280)
.+||=|||| .|..... |++.. ..+|+..|.++..++.+.... ..+++..+.|+.+.+ + . -..+|+|+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~------~~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELI------GGKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhc------cccceeEEecccChHHHHHHHhcCCEEEE
Confidence 478999995 3433322 34442 379999999988777665552 347899999998763 1 0 123588886
Q ss_pred chh
Q 048398 262 SYV 264 (280)
Q Consensus 262 ~~v 264 (280)
..-
T Consensus 75 ~~p 77 (389)
T COG1748 75 AAP 77 (389)
T ss_pred eCC
Confidence 543
No 365
>PRK05650 short chain dehydrogenase; Provisional
Probab=64.40 E-value=38 Score=29.19 Aligned_cols=74 Identities=11% Similarity=-0.031 Sum_probs=46.9
Q ss_pred cEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----CCC
Q 048398 188 DILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----PSK 254 (280)
Q Consensus 188 ~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 254 (280)
+||=.|++.|. ++..+++. +.+|+.++.++.-++.....+... ..++.++.+|+.+.. + .-+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWARE--GWRLALADVNEEGGEETLKLLREA---GGDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57777765554 33334443 779999999887666655555433 346788899986532 0 013
Q ss_pred ceeeEEechhhh
Q 048398 255 SFDVVSLSYVVC 266 (280)
Q Consensus 255 sfDlVi~~~vlh 266 (280)
.+|+++.+....
T Consensus 77 ~id~lI~~ag~~ 88 (270)
T PRK05650 77 GIDVIVNNAGVA 88 (270)
T ss_pred CCCEEEECCCCC
Confidence 689998876543
No 366
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=64.19 E-value=40 Score=28.34 Aligned_cols=78 Identities=14% Similarity=0.033 Sum_probs=48.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
..++||=.|++ |.++..+++.+ .+.+|++++-++..+......+... ..++.++.+|+.+.. + .
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA---GGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45688877764 44444443332 2679999999877666555555433 345888999987631 0 0
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
-+++|+|+.+....
T Consensus 81 ~~~~d~vi~~ag~~ 94 (251)
T PRK12826 81 FGRLDILVANAGIF 94 (251)
T ss_pred hCCCCEEEECCCCC
Confidence 13578888776543
No 367
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=63.97 E-value=41 Score=28.64 Aligned_cols=76 Identities=9% Similarity=-0.073 Sum_probs=49.5
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------C--
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------L-- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~-- 251 (280)
..++||=.|++.|. ++..+++. +++++.++.++..++.....+... ..++.++.+|+.+.. .
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~--G~~vv~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQL---GGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 56899999977664 33334444 678999998877666655554433 246778888887542 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+++|+++.+..+
T Consensus 85 ~~~~~d~li~~ag~ 98 (255)
T PRK06113 85 KLGKVDILVNNAGG 98 (255)
T ss_pred HcCCCCEEEECCCC
Confidence 11457988877654
No 368
>PRK09242 tropinone reductase; Provisional
Probab=63.52 E-value=43 Score=28.55 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=49.9
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------C--
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------L-- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~-- 251 (280)
..+++|=.|++.|. ++..+++. +++|+.++.++..++.....+... ....++.++.+|+.+.. .
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGL--GADVLIVARDADALAQARDELAEE-FPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhh-CCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56789999986654 33333433 679999999887766655554432 11346888899986531 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-++.|+|+.+...
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 12468998877654
No 369
>PRK07814 short chain dehydrogenase; Provisional
Probab=63.23 E-value=46 Score=28.59 Aligned_cols=76 Identities=13% Similarity=-0.051 Sum_probs=48.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL-----P----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~-----~----- 252 (280)
+.+++|=.|++ |..+..+++.+ .+++|++++.++..++...+.+... ..++.++.+|+.+..- .
T Consensus 9 ~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA---GRRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 56788888864 44444444332 3789999999987766555554432 3468888898866420 0
Q ss_pred CCceeeEEechh
Q 048398 253 SKSFDVVSLSYV 264 (280)
Q Consensus 253 ~~sfDlVi~~~v 264 (280)
-+.+|+|+.+..
T Consensus 85 ~~~id~vi~~Ag 96 (263)
T PRK07814 85 FGRLDIVVNNVG 96 (263)
T ss_pred cCCCCEEEECCC
Confidence 135899887654
No 370
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.19 E-value=44 Score=27.97 Aligned_cols=75 Identities=16% Similarity=0.039 Sum_probs=46.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
+.++||=.|++.|. +..+++.+ .+.+|++++.++.-.....+..... .++.++.+|+.+.. +.
T Consensus 4 ~~~~vlItGa~g~i-G~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVSEGL-GYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999986443 33333332 3779999999887665544443322 36788899987632 00
Q ss_pred CCceeeEEechh
Q 048398 253 SKSFDVVSLSYV 264 (280)
Q Consensus 253 ~~sfDlVi~~~v 264 (280)
-+..|.++.+..
T Consensus 79 ~~~id~ii~~ag 90 (238)
T PRK05786 79 LNAIDGLVVTVG 90 (238)
T ss_pred hCCCCEEEEcCC
Confidence 134687776654
No 371
>PRK08862 short chain dehydrogenase; Provisional
Probab=63.00 E-value=40 Score=28.53 Aligned_cols=75 Identities=11% Similarity=-0.065 Sum_probs=50.6
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C----C
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----~ 252 (280)
..+++|=.|++.|. .+..+++. +++|+.++.++..++...+.+... ...+.....|..+.. + .
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~~i~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARL--GATLILCDQDQSALKDTYEQCSAL---TDNVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhc---CCCeEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999886 44445554 789999999988887776665544 234666677765431 1 1
Q ss_pred -CC-ceeeEEechh
Q 048398 253 -SK-SFDVVSLSYV 264 (280)
Q Consensus 253 -~~-sfDlVi~~~v 264 (280)
-+ ..|+++.+..
T Consensus 79 ~~g~~iD~li~nag 92 (227)
T PRK08862 79 QFNRAPDVLVNNWT 92 (227)
T ss_pred HhCCCCCEEEECCc
Confidence 13 6899988863
No 372
>PRK09186 flagellin modification protein A; Provisional
Probab=62.96 E-value=45 Score=28.29 Aligned_cols=77 Identities=17% Similarity=0.019 Sum_probs=47.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
..++||=.|++.| .+..+++.+ .+.+|++++.++..++.....+... .....+.++.+|+.+.. +.
T Consensus 3 ~~k~vlItGas~g-iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KGKTILITGAGGL-IGSALVKAILEAGGIVIAADIDKEALNELLESLGKE-FKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhh-cCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 4567888887544 333333332 3679999999887776665555332 12335678889987632 11
Q ss_pred CCceeeEEech
Q 048398 253 SKSFDVVSLSY 263 (280)
Q Consensus 253 ~~sfDlVi~~~ 263 (280)
-+..|+|+.+.
T Consensus 81 ~~~id~vi~~A 91 (256)
T PRK09186 81 YGKIDGAVNCA 91 (256)
T ss_pred cCCccEEEECC
Confidence 13479988775
No 373
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.82 E-value=46 Score=28.02 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=47.2
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP---- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 252 (280)
+.+++|=.|++.|. ++..+++. +.+|++++.++.........+... ..++.++.+|+.+.. +.
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~ 76 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEE--GAKVAVFDLNREAAEKVAADIRAK---GGNAQAFACDITDRDSVDTAVAAAEQ 76 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhc---CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35678888865443 33333443 679999999887666555554433 346889999986532 00
Q ss_pred -CCceeeEEechhh
Q 048398 253 -SKSFDVVSLSYVV 265 (280)
Q Consensus 253 -~~sfDlVi~~~vl 265 (280)
.++.|+|+.+...
T Consensus 77 ~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 77 ALGPVDVLVNNAGW 90 (250)
T ss_pred HcCCCCEEEECCCC
Confidence 1357988776643
No 374
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=62.82 E-value=18 Score=33.16 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=36.2
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLK 228 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~ 228 (280)
...+|.=+||| .|..++.-++.....+|+++|+++.-++.|++.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 56788888887 677777777777566999999999999988875
No 375
>PLN02780 ketoreductase/ oxidoreductase
Probab=62.78 E-value=33 Score=30.87 Aligned_cols=61 Identities=18% Similarity=-0.063 Sum_probs=41.7
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGED 248 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~ 248 (280)
.++.+|=.|++.|. ++..+++. +++|+.++.++..++...+.+... ....++..+.+|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~--G~~Vil~~R~~~~l~~~~~~l~~~-~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARK--GLNLVLVARNPDKLKDVSDSIQSK-YSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHH-CCCcEEEEEEEECCC
Confidence 35688888887765 44455554 789999999998887766665543 112356777788763
No 376
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=62.63 E-value=43 Score=28.53 Aligned_cols=77 Identities=10% Similarity=-0.053 Sum_probs=46.6
Q ss_pred CcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----CCC
Q 048398 187 RDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----PSK 254 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 254 (280)
++||=.|++ |..+..+++.+ .+++|+.+|.++..++.....+... ....++.++.+|+.+.. + .-+
T Consensus 3 k~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAE-YGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-cCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 468888865 44444443333 3789999999887665554444332 11246889999987531 0 114
Q ss_pred ceeeEEechhh
Q 048398 255 SFDVVSLSYVV 265 (280)
Q Consensus 255 sfDlVi~~~vl 265 (280)
..|+|+.+...
T Consensus 81 ~id~vv~~ag~ 91 (259)
T PRK12384 81 RVDLLVYNAGI 91 (259)
T ss_pred CCCEEEECCCc
Confidence 57888877643
No 377
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=62.54 E-value=60 Score=30.50 Aligned_cols=69 Identities=14% Similarity=0.070 Sum_probs=45.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----CCCCceee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----LPSKSFDV 258 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~sfDl 258 (280)
...+|+=+|| |..+..+++.. -+..++.+|.++..++..++.. ..+.++.||..+.. ..-..+|.
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 4577888887 55555555443 2578999999999877665542 24578888886532 12235787
Q ss_pred EEec
Q 048398 259 VSLS 262 (280)
Q Consensus 259 Vi~~ 262 (280)
|++.
T Consensus 301 vi~~ 304 (453)
T PRK09496 301 FIAL 304 (453)
T ss_pred EEEC
Confidence 7754
No 378
>PRK08643 acetoin reductase; Validated
Probab=62.36 E-value=45 Score=28.37 Aligned_cols=75 Identities=21% Similarity=0.093 Sum_probs=47.4
Q ss_pred CcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----CCC
Q 048398 187 RDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----PSK 254 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 254 (280)
+++|=.|++.| .+..+++.+ .+.+|+++|.++..++.....+... ..++.++.+|+.+.. + ..+
T Consensus 3 k~~lItGas~g-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQG-IGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD---GGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46776776555 334333332 3779999999887776666655443 346788889987642 1 124
Q ss_pred ceeeEEechhh
Q 048398 255 SFDVVSLSYVV 265 (280)
Q Consensus 255 sfDlVi~~~vl 265 (280)
+.|+++.+...
T Consensus 79 ~id~vi~~ag~ 89 (256)
T PRK08643 79 DLNVVVNNAGV 89 (256)
T ss_pred CCCEEEECCCC
Confidence 57998877644
No 379
>PRK07109 short chain dehydrogenase; Provisional
Probab=61.45 E-value=46 Score=30.08 Aligned_cols=76 Identities=20% Similarity=0.107 Sum_probs=50.4
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L--------- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~--------- 251 (280)
..++||=.|++.|. ++..+++. +++|+.++.++..++...+.+... ..++.++.+|+.+.. +
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~~~---g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARR--GAKVVLLARGEEGLEALAAEIRAA---GGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc---CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 45678888876654 23334444 789999999988777666665543 347888999986632 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-++.|+++.+...
T Consensus 82 ~~g~iD~lInnAg~ 95 (334)
T PRK07109 82 ELGPIDTWVNNAMV 95 (334)
T ss_pred HCCCCCEEEECCCc
Confidence 02468998877654
No 380
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=61.30 E-value=46 Score=28.25 Aligned_cols=78 Identities=14% Similarity=-0.016 Sum_probs=48.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
+.+++|=.|+. |..+..+++.+ .+.+|++++.++...+...+.+... ..++.++.+|+.+.. + .
T Consensus 6 ~~~~vlItGas-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 6 NGKTAVVTGAA-SGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA---GGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc---CceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45678866654 44344433332 2678999999987776666665443 346788999987642 0 0
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
.++.|+|+.+....
T Consensus 82 ~~~~d~vi~~ag~~ 95 (262)
T PRK13394 82 FGSVDILVSNAGIQ 95 (262)
T ss_pred cCCCCEEEECCccC
Confidence 13579888776553
No 381
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=61.22 E-value=48 Score=28.19 Aligned_cols=78 Identities=18% Similarity=0.001 Sum_probs=50.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
..++||=.|+ +|..+..+++.+ .+.+|++++.++..++.....+... ..++.++.+|+.+.. + .
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ---GLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 5678888885 454455554433 3779999999987776665555443 246788888987632 1 1
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
-+..|+|+.+....
T Consensus 85 ~~~~d~li~~ag~~ 98 (255)
T PRK07523 85 IGPIDILVNNAGMQ 98 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 23578888776543
No 382
>PRK08589 short chain dehydrogenase; Validated
Probab=61.16 E-value=47 Score=28.78 Aligned_cols=76 Identities=22% Similarity=0.109 Sum_probs=47.7
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.+++|=.|++.|. ++..+++. +++|++++.+ ..++...+.+... ..++.++.+|+.+.. +
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~--G~~vi~~~r~-~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQE--GAYVLAVDIA-EAVSETVDKIKSN---GGKAKAYHVDISDEQQVKDFASEIKE 78 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCc-HHHHHHHHHHHhc---CCeEEEEEeecCCHHHHHHHHHHHHH
Confidence 46688888877665 33334444 7899999998 4444444444333 346788889986532 0
Q ss_pred CCCceeeEEechhhh
Q 048398 252 PSKSFDVVSLSYVVC 266 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh 266 (280)
.-+..|+++.+..+.
T Consensus 79 ~~g~id~li~~Ag~~ 93 (272)
T PRK08589 79 QFGRVDVLFNNAGVD 93 (272)
T ss_pred HcCCcCEEEECCCCC
Confidence 124589998876553
No 383
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=61.02 E-value=59 Score=28.77 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=63.3
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------CC-
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------LP- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~~- 252 (280)
..+++|=-|...|+ ++..++++ +.+++.+--+..-+....+.++.. ....+.++..|+.+.. +.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~--g~~liLvaR~~~kL~~la~~l~~~--~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR--GYNLILVARREDKLEALAKELEDK--TGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCcHHHHHHHHHHHHHh--hCceEEEEECcCCChhHHHHHHHHHHh
Confidence 56788888988886 66666666 789999999999888888888766 3557889999987753 11
Q ss_pred -CCceeeEEechhhhhCCC
Q 048398 253 -SKSFDVVSLSYVVCLLSN 270 (280)
Q Consensus 253 -~~sfDlVi~~~vlh~l~d 270 (280)
....|+.+-+..+.+..+
T Consensus 81 ~~~~IdvLVNNAG~g~~g~ 99 (265)
T COG0300 81 RGGPIDVLVNNAGFGTFGP 99 (265)
T ss_pred cCCcccEEEECCCcCCccc
Confidence 137999999988877664
No 384
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=60.79 E-value=14 Score=31.84 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=33.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEK 230 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~ 230 (280)
...+++|.=||+|..+..+... +.+++.-|+++..+...+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~--~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP--GKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc--ccceeeeechHHHHHHHHHHHh
Confidence 5789999999999999888763 7899999999998888875544
No 385
>PRK08251 short chain dehydrogenase; Provisional
Probab=60.67 E-value=51 Score=27.80 Aligned_cols=78 Identities=13% Similarity=-0.015 Sum_probs=48.6
Q ss_pred CcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------CCC
Q 048398 187 RDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L---------PSK 254 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 254 (280)
+++|=.|++ |.++..+++.+ .+.+|+.++.++..++.....+... ....++.++.+|+.+.. + .-+
T Consensus 3 k~vlItGas-~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGAS-SGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLAR-YPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-CCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467877754 44444444433 2578999999887776665554432 12346888999987642 0 123
Q ss_pred ceeeEEechhhh
Q 048398 255 SFDVVSLSYVVC 266 (280)
Q Consensus 255 sfDlVi~~~vlh 266 (280)
..|+|+.+..+.
T Consensus 81 ~id~vi~~ag~~ 92 (248)
T PRK08251 81 GLDRVIVNAGIG 92 (248)
T ss_pred CCCEEEECCCcC
Confidence 578888876543
No 386
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=60.37 E-value=49 Score=28.62 Aligned_cols=76 Identities=18% Similarity=-0.060 Sum_probs=48.8
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP---- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 252 (280)
+.+++|=.|++.|. ++..+++. +++|+.+|.++...+...+.+... ..++.++.+|+.+.. +.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARA--GAKVAILDRNQEKAEAVVAEIKAA---GGEALAVKADVLDKESLEQARQQILE 83 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56778888876654 33333333 779999999877665555554433 346788899986642 00
Q ss_pred -CCceeeEEechhh
Q 048398 253 -SKSFDVVSLSYVV 265 (280)
Q Consensus 253 -~~sfDlVi~~~vl 265 (280)
-+..|+++.+...
T Consensus 84 ~~g~id~li~~ag~ 97 (278)
T PRK08277 84 DFGPCDILINGAGG 97 (278)
T ss_pred HcCCCCEEEECCCC
Confidence 1468999887653
No 387
>PRK12939 short chain dehydrogenase; Provisional
Probab=60.23 E-value=56 Score=27.43 Aligned_cols=77 Identities=12% Similarity=-0.065 Sum_probs=48.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
+.+++|=.|++ |..+..+++.+ .+.++++++.++..+....+.+... ..++.++.+|+.+.. +.
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA---GGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45778877754 44444444332 2678999999887666655555432 347889999987632 10
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-++.|+|+.+...
T Consensus 82 ~~~id~vi~~ag~ 94 (250)
T PRK12939 82 LGGLDGLVNNAGI 94 (250)
T ss_pred cCCCCEEEECCCC
Confidence 1468988876544
No 388
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=60.08 E-value=49 Score=28.00 Aligned_cols=78 Identities=15% Similarity=-0.038 Sum_probs=48.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----------C-
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----------L- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----------~- 251 (280)
+.++||=.|++.| ++..+++.+ .+++|+++|.++..++.....+... ...++.++.+|+.... +
T Consensus 11 ~~k~vlItG~~g~-iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 11 KDRIILVTGAGDG-IGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA--GGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc--CCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 6778998886544 444443332 2679999999987666655555443 2346778888875321 1
Q ss_pred -CCCceeeEEechhh
Q 048398 252 -PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 -~~~sfDlVi~~~vl 265 (280)
..++.|.|+.+...
T Consensus 88 ~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 88 EQFGRLDGVLHNAGL 102 (247)
T ss_pred HHhCCCCEEEECCcc
Confidence 11368998877543
No 389
>PRK07576 short chain dehydrogenase; Provisional
Probab=59.99 E-value=53 Score=28.27 Aligned_cols=76 Identities=16% Similarity=0.042 Sum_probs=47.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
+.++||=.|.+. ..+..+++.+ .+++|+++|.++..++.....+... ..++.++.+|+.+.. + .
T Consensus 8 ~~k~ilItGasg-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGGTS-GINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA---GPEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 567888888644 4344433332 3789999999887766554444433 235678888886532 1 1
Q ss_pred CCceeeEEechh
Q 048398 253 SKSFDVVSLSYV 264 (280)
Q Consensus 253 ~~sfDlVi~~~v 264 (280)
.+..|+++.+..
T Consensus 84 ~~~iD~vi~~ag 95 (264)
T PRK07576 84 FGPIDVLVSGAA 95 (264)
T ss_pred cCCCCEEEECCC
Confidence 235799987653
No 390
>PRK06139 short chain dehydrogenase; Provisional
Probab=59.89 E-value=47 Score=30.07 Aligned_cols=76 Identities=14% Similarity=0.035 Sum_probs=51.4
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
..++||=.|++.|. ++..+++. +++|+.++.++..++...+.+... ..++.++.+|+.+.. +
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~--G~~Vvl~~R~~~~l~~~~~~~~~~---g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARR--GARLVLAARDEEALQAVAEECRAL---GAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 56788888876654 33334444 789999999988877766666544 346778888886531 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
..+.+|+++.+..+
T Consensus 81 ~~g~iD~lVnnAG~ 94 (330)
T PRK06139 81 FGGRIDVWVNNVGV 94 (330)
T ss_pred hcCCCCEEEECCCc
Confidence 01568999988664
No 391
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=59.68 E-value=33 Score=30.69 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=53.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC---CCceeeEEe
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLP---SKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~---~~sfDlVi~ 261 (280)
.++.|+=+| ---..+++++-..-..+|..+||++..++.-.+.+++. +.+++..+.-|+.+. +| ..+||+.+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~--g~~~ie~~~~Dlr~p-lpe~~~~kFDvfiT 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL--GYNNIEAFVFDLRNP-LPEDLKRKFDVFIT 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh--Cccchhheeehhccc-ChHHHHhhCCeeec
Confidence 677899999 44445555554432458999999999999988888776 456788888888773 55 357998764
No 392
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=59.32 E-value=20 Score=35.61 Aligned_cols=60 Identities=5% Similarity=0.006 Sum_probs=39.2
Q ss_pred CCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----CCCCceeeEEec
Q 048398 194 CSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----LPSKSFDVVSLS 262 (280)
Q Consensus 194 cGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~sfDlVi~~ 262 (280)
||-|..+..+++.. .+.+++.+|.+|..++.+++. ....+.||..+.. ..-+..|++++.
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~---------g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY---------GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC---------CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 55566666555432 267899999999988877542 2468899987643 122346776654
No 393
>PRK06197 short chain dehydrogenase; Provisional
Probab=59.13 E-value=55 Score=28.88 Aligned_cols=80 Identities=13% Similarity=-0.058 Sum_probs=49.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------C--C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------L--P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~--~ 252 (280)
..++||=.|+..|. +..+++.+ .+.+|++++.++...+.+.+.+... ....++.++.+|+.+.. + .
T Consensus 15 ~~k~vlItGas~gI-G~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANTGL-GYETAAALAAKGAHVVLAVRNLDKGKAAAARITAA-TPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 56788877765443 44443322 2679999998877666555554432 12346888999987642 0 1
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
.+..|+++.+..+.
T Consensus 93 ~~~iD~li~nAg~~ 106 (306)
T PRK06197 93 YPRIDLLINNAGVM 106 (306)
T ss_pred CCCCCEEEECCccc
Confidence 23589999887654
No 394
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.68 E-value=47 Score=28.66 Aligned_cols=34 Identities=26% Similarity=0.309 Sum_probs=27.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLS 218 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDis 218 (280)
.++.||=.||+.|..+.++++.+ .+++|+++--+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccc
Confidence 67899999999999888888776 46788887544
No 395
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=57.87 E-value=20 Score=32.48 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=31.5
Q ss_pred CCCcEEEECCC-CChhHHHHHhh-CCCCeEEEEeCCHHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADK-FPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~-~p~~~v~gvDisp~~l~~A~~ 227 (280)
...+||=+||| .|.++..+++. ..+.+|+++|.++.-++.++.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 56789999976 44555666664 445789999999887777754
No 396
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=57.83 E-value=49 Score=28.27 Aligned_cols=72 Identities=19% Similarity=0.066 Sum_probs=47.0
Q ss_pred cEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----CCC
Q 048398 188 DILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----PSK 254 (280)
Q Consensus 188 ~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 254 (280)
++|=.|++.|. ++..+++. +++|+.++.++..++.+.+.+... .++.++.+|+.+.. + .-+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKK--GARVVISSRNEENLEKALKELKEY----GEVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 56777876554 33334444 689999999988777666665433 25788889886531 0 124
Q ss_pred ceeeEEechhh
Q 048398 255 SFDVVSLSYVV 265 (280)
Q Consensus 255 sfDlVi~~~vl 265 (280)
..|+++.+...
T Consensus 76 ~id~li~naG~ 86 (259)
T PRK08340 76 GIDALVWNAGN 86 (259)
T ss_pred CCCEEEECCCC
Confidence 68999887654
No 397
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=57.64 E-value=13 Score=33.33 Aligned_cols=76 Identities=12% Similarity=-0.011 Sum_probs=43.8
Q ss_pred CCCChhHHHHHhhC---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEE----EEeCCCCCC-----CCCCceeeEEe
Q 048398 194 CSVGVSTKCLADKF---PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISW----VHAIGEDSG-----LPSKSFDVVSL 261 (280)
Q Consensus 194 cGtG~~a~~l~~~~---p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~----~~~d~~~~~-----~~~~sfDlVi~ 261 (280)
.|+|..+..|.+.. .-.+++.+|.++..+-..+..+... ....++.+ +.+|+.+.. +.....|+|+-
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~-~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSR-FPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHH-C--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhc-ccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 57788777776653 1268999999999888888877533 11234554 478876532 44457899999
Q ss_pred chhhhhCCC
Q 048398 262 SYVVCLLSN 270 (280)
Q Consensus 262 ~~vlh~l~d 270 (280)
...+-|+|-
T Consensus 84 aAA~KhVpl 92 (293)
T PF02719_consen 84 AAALKHVPL 92 (293)
T ss_dssp ------HHH
T ss_pred ChhcCCCCh
Confidence 998888874
No 398
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=57.45 E-value=57 Score=27.50 Aligned_cols=74 Identities=14% Similarity=0.026 Sum_probs=46.4
Q ss_pred cEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------C--CCCc
Q 048398 188 DILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------L--PSKS 255 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~~s 255 (280)
+||=.| |+|.++..+++.+ .+.+|++++.++...+.....+... ..++.++.+|+.+.. . ..++
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA---GGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 466666 4455555555443 3679999999887666555544433 347888999987642 1 1235
Q ss_pred eeeEEechhh
Q 048398 256 FDVVSLSYVV 265 (280)
Q Consensus 256 fDlVi~~~vl 265 (280)
.|+|+.+...
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 7888876543
No 399
>PRK06181 short chain dehydrogenase; Provisional
Probab=57.39 E-value=59 Score=27.72 Aligned_cols=76 Identities=13% Similarity=0.026 Sum_probs=46.2
Q ss_pred CcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----CCC
Q 048398 187 RDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----PSK 254 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 254 (280)
++||=.|++ |.++..+++.+ .+.+|++++.++...+...+.+... ..++.++.+|+.+.. + .-+
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH---GGEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 357766654 44444443332 3679999999987666555554433 346888888886632 0 013
Q ss_pred ceeeEEechhhh
Q 048398 255 SFDVVSLSYVVC 266 (280)
Q Consensus 255 sfDlVi~~~vlh 266 (280)
..|+|+.+....
T Consensus 78 ~id~vi~~ag~~ 89 (263)
T PRK06181 78 GIDILVNNAGIT 89 (263)
T ss_pred CCCEEEECCCcc
Confidence 578888776543
No 400
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=56.76 E-value=14 Score=33.53 Aligned_cols=40 Identities=25% Similarity=0.157 Sum_probs=31.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQ 226 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~ 226 (280)
..-+||-=|||.|.++..|+..++ ++-|-++|-.|+-...
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSS 189 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHH
Confidence 356899999999999999999955 4556688877765443
No 401
>PRK08303 short chain dehydrogenase; Provisional
Probab=56.61 E-value=49 Score=29.50 Aligned_cols=74 Identities=12% Similarity=-0.057 Sum_probs=45.9
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCH----------HHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSP----------YFLAVAQLKEKKGGPRKNPISWVHAIGEDSG- 250 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp----------~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~- 250 (280)
+.+++|-.|++.|. .+..+++. +++|+.++.+. .-++...+.+... ..++.++++|+.+..
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~--G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv~~~~~ 81 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAA--GATVYVTGRSTRARRSEYDRPETIEETAELVTAA---GGRGIAVQVDHLVPEQ 81 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEecccccccccccccchHHHHHHHHHhc---CCceEEEEcCCCCHHH
Confidence 56789999988775 33334443 78999988763 2333333344333 345778888886532
Q ss_pred -------C--CCCceeeEEech
Q 048398 251 -------L--PSKSFDVVSLSY 263 (280)
Q Consensus 251 -------~--~~~sfDlVi~~~ 263 (280)
. .-+..|+++.+.
T Consensus 82 v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 82 VRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHcCCccEEEECC
Confidence 0 124689988875
No 402
>PRK05875 short chain dehydrogenase; Provisional
Probab=56.54 E-value=67 Score=27.66 Aligned_cols=78 Identities=19% Similarity=0.074 Sum_probs=47.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
+.+++|=.|++.| .+..+++.+ .+.+|++++.++...+.....+... ....++.++.+|+.+.. +.
T Consensus 6 ~~k~vlItGasg~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGGSG-IGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEAL-KGAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-cCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4678998886544 344443332 2679999999877655544444332 11347888899986632 11
Q ss_pred CCceeeEEechh
Q 048398 253 SKSFDVVSLSYV 264 (280)
Q Consensus 253 ~~sfDlVi~~~v 264 (280)
.+..|+++.+..
T Consensus 84 ~~~~d~li~~ag 95 (276)
T PRK05875 84 HGRLHGVVHCAG 95 (276)
T ss_pred cCCCCEEEECCC
Confidence 135798887654
No 403
>PRK05599 hypothetical protein; Provisional
Probab=56.23 E-value=62 Score=27.56 Aligned_cols=75 Identities=9% Similarity=0.067 Sum_probs=47.8
Q ss_pred cEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------C--CCCce
Q 048398 188 DILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------L--PSKSF 256 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~~sf 256 (280)
++|=.|++.|. +..+++.+ .+.+|+.++.++.-++...+.+... ....+.++.+|+.+.. . ..+..
T Consensus 2 ~vlItGas~GI-G~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 2 SILILGGTSDI-AGEIATLLCHGEDVVLAARRPEAAQGLASDLRQR--GATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred eEEEEeCccHH-HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc--cCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 46777887765 33333222 3678999998888777666666544 2335778888876632 0 12468
Q ss_pred eeEEechhh
Q 048398 257 DVVSLSYVV 265 (280)
Q Consensus 257 DlVi~~~vl 265 (280)
|+++.+...
T Consensus 79 d~lv~nag~ 87 (246)
T PRK05599 79 SLAVVAFGI 87 (246)
T ss_pred CEEEEecCc
Confidence 999877654
No 404
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=56.02 E-value=66 Score=27.32 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=49.0
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
..+++|=.|++.|. .+..+++. +++|+.+|.++..+......+... ..++.++.+|+.+.. +
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~--G~~vvl~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEY--GAEIIINDITAERAELAVAKLRQE---GIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHHHHhc---CCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 56788888866554 33334443 689999999887666655555433 245777888876532 1
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
..+.+|+|+.+...
T Consensus 83 ~~~~id~vi~~ag~ 96 (254)
T PRK08085 83 DIGPIDVLINNAGI 96 (254)
T ss_pred hcCCCCEEEECCCc
Confidence 12458999987654
No 405
>PRK07024 short chain dehydrogenase; Provisional
Probab=55.74 E-value=48 Score=28.30 Aligned_cols=75 Identities=20% Similarity=0.144 Sum_probs=46.2
Q ss_pred CcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------CCC
Q 048398 187 RDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L---------PSK 254 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 254 (280)
++||=.|++.|. +..+++.+ .+++|+.+|.++..++...+.+... .++.++.+|+.+.. + ..+
T Consensus 3 ~~vlItGas~gI-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 3 LKVFITGASSGI-GQALAREYARQGATLGLVARRTDALQAFAARLPKA----ARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CEEEEEcCCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC----CeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 467777765543 33333332 2679999999887665544433222 27889999987632 0 123
Q ss_pred ceeeEEechhhh
Q 048398 255 SFDVVSLSYVVC 266 (280)
Q Consensus 255 sfDlVi~~~vlh 266 (280)
..|+++.+....
T Consensus 78 ~id~lv~~ag~~ 89 (257)
T PRK07024 78 LPDVVIANAGIS 89 (257)
T ss_pred CCCEEEECCCcC
Confidence 579999876653
No 406
>PRK12829 short chain dehydrogenase; Provisional
Probab=55.61 E-value=78 Score=26.85 Aligned_cols=75 Identities=20% Similarity=0.181 Sum_probs=46.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
+.+++|=.|++.| ++..+++.+ .+.+|++++.++..++...+... ..++.++.+|+.+.. +.
T Consensus 10 ~~~~vlItGa~g~-iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 10 DGLRVLVTGGASG-IGRAIAEAFAEAGARVHVCDVSEAALAATAARLP-----GAKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred CCCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-----cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 6788998887644 344433332 26789999998775554333321 115788888887632 10
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-+++|+|+.+...
T Consensus 84 ~~~~d~vi~~ag~ 96 (264)
T PRK12829 84 FGGLDVLVNNAGI 96 (264)
T ss_pred hCCCCEEEECCCC
Confidence 1358998876543
No 407
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=55.30 E-value=72 Score=27.19 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=46.7
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
..++||=.|++.|. ++..+++. +++|+.++.+ ...+.+.+.+... ..++.++.+|+.+.. +
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKA--GADIIITTHG-TNWDETRRLIEKE---GRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCC-cHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 56789988887665 33333443 7889999887 3344444444433 346888999987632 1
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+..|+++.+...
T Consensus 88 ~~g~id~li~~ag~ 101 (258)
T PRK06935 88 EFGKIDILVNNAGT 101 (258)
T ss_pred HcCCCCEEEECCCC
Confidence 01357998877544
No 408
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=55.01 E-value=62 Score=27.61 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
..+++|-.|++.|. .+..+++. +++|++++.++. +...+..... ..++.++.+|+.+.. +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~--G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKA--GADIVGVGVAEA--PETQAQVEAL---GRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEecCchH--HHHHHHHHHc---CCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 56789999987775 33444444 789998887542 2222333322 346888899986642 1
Q ss_pred CCCceeeEEechhhh
Q 048398 252 PSKSFDVVSLSYVVC 266 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh 266 (280)
.-++.|+++.+..+.
T Consensus 80 ~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 80 VMGHIDILINNAGII 94 (251)
T ss_pred HcCCCCEEEECCCcC
Confidence 124689998876543
No 409
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=54.86 E-value=67 Score=28.62 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=48.2
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP---- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 252 (280)
..++||=.|++.|+ .+..+++. +++|++++.++.-.+.+.+.+... ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKR--GWHVIMACRNLKKAEAAAQELGIP---PDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhcc---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 45678888876554 33334443 689999998877655554444322 346888999986642 11
Q ss_pred -CCceeeEEechhh
Q 048398 253 -SKSFDVVSLSYVV 265 (280)
Q Consensus 253 -~~sfDlVi~~~vl 265 (280)
.+..|+++.+..+
T Consensus 80 ~~~~iD~li~nAg~ 93 (322)
T PRK07453 80 LGKPLDALVCNAAV 93 (322)
T ss_pred hCCCccEEEECCcc
Confidence 1358999988764
No 410
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=54.64 E-value=26 Score=34.32 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=38.1
Q ss_pred CCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----CCCCceeeEEe
Q 048398 194 CSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----LPSKSFDVVSL 261 (280)
Q Consensus 194 cGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~sfDlVi~ 261 (280)
||.|..+..+++.. .+.+++.+|.++..++.+++. ....++||..+.. ..-++.|.+++
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~---------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER---------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC---------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 45555555565543 257899999999888777532 3578899987642 12235776554
No 411
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=54.55 E-value=35 Score=29.81 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=36.2
Q ss_pred CCCcEEEECCCCChhHHHHHh---hC--CCCeEEEEeCCH--------------------------HHHHHHHHHHHhcC
Q 048398 185 EIRDILDIGCSVGVSTKCLAD---KF--PSAKVTGLDLSP--------------------------YFLAVAQLKEKKGG 233 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~---~~--p~~~v~gvDisp--------------------------~~l~~A~~~~~~~~ 233 (280)
-+..|+|+||-.|..++.++. .+ +.-+++++|--. ..++..++++...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 578999999999987665533 22 344688888422 12333444444431
Q ss_pred CCCCCeEEEEeCCCCC
Q 048398 234 PRKNPISWVHAIGEDS 249 (280)
Q Consensus 234 ~~~~~v~~~~~d~~~~ 249 (280)
-..++++++.|.+.++
T Consensus 154 l~~~~v~~vkG~F~dT 169 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDT 169 (248)
T ss_dssp TSSTTEEEEES-HHHH
T ss_pred CCcccEEEECCcchhh
Confidence 1346899999998765
No 412
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.40 E-value=71 Score=26.83 Aligned_cols=75 Identities=17% Similarity=0.046 Sum_probs=47.1
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L--------- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~--------- 251 (280)
+.++||=.|++.|. ++..+++. +.+|++++.++..++.....+.. ..++.++.+|+.+.. +
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAE--GARVVVTDRNEEAAERVAAEILA----GGRAIAVAADVSDEADVEAAVAAALE 77 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHhc----CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45678878765443 33334444 67899999998766555444332 235888999987642 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
..+.+|+|+.+...
T Consensus 78 ~~~~~d~vi~~ag~ 91 (251)
T PRK07231 78 RFGSVDILVNNAGT 91 (251)
T ss_pred HhCCCCEEEECCCC
Confidence 11357999887654
No 413
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=54.26 E-value=24 Score=32.00 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=30.4
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeC---CHHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDL---SPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDi---sp~~l~~A~~ 227 (280)
.+.+||=+||| .|.++..+++.. +++|++++. ++.-++.+++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH
Confidence 56788888886 466777777776 678999986 5666665543
No 414
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=54.24 E-value=61 Score=27.71 Aligned_cols=73 Identities=15% Similarity=0.041 Sum_probs=47.0
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.+++|=.|++.|. .+..+++. +++|++++.++..++...... ..++.++.+|+.+.. +
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAE--GARVAVLERSAEKLASLRQRF------GDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh------CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 56788989977665 33334443 789999999877655443322 235778888886532 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
..+..|+++.+..+
T Consensus 77 ~~g~id~li~~ag~ 90 (263)
T PRK06200 77 AFGKLDCFVGNAGI 90 (263)
T ss_pred hcCCCCEEEECCCC
Confidence 12468998877665
No 415
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=53.99 E-value=72 Score=26.93 Aligned_cols=74 Identities=18% Similarity=0.070 Sum_probs=43.9
Q ss_pred cEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----CCCc
Q 048398 188 DILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----PSKS 255 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~s 255 (280)
++|=.|++.| .+..+++.+ .+++|+.++.++..+....+.+... ..++.++.+|+.+.. + ..++
T Consensus 2 ~~lItG~sg~-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQG-IGKGIAERLAKDGFAVAVADLNEETAKETAKEINQA---GGKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4666776444 344333322 2779999998876665554444433 346888899986532 0 1135
Q ss_pred eeeEEechhh
Q 048398 256 FDVVSLSYVV 265 (280)
Q Consensus 256 fDlVi~~~vl 265 (280)
.|+++.+...
T Consensus 78 id~vi~~ag~ 87 (254)
T TIGR02415 78 FDVMVNNAGV 87 (254)
T ss_pred CCEEEECCCc
Confidence 6888876644
No 416
>PRK07791 short chain dehydrogenase; Provisional
Probab=53.81 E-value=63 Score=28.32 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=48.1
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCH---------HHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSP---------YFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-- 250 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp---------~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-- 250 (280)
+.+++|=.|++.|+ .+..+++. +++|+.+|.+. ..++...+.+... ..++.++.+|+.+..
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~--G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv~~~~~v 79 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAE--GARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA---GGEAVANGDDIADWDGA 79 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEeeCCccccccccchhHHHHHHHHHHhc---CCceEEEeCCCCCHHHH
Confidence 56789999988775 33344444 78898888764 4444444444332 346778888886531
Q ss_pred ---C-----CCCceeeEEechhhh
Q 048398 251 ---L-----PSKSFDVVSLSYVVC 266 (280)
Q Consensus 251 ---~-----~~~sfDlVi~~~vlh 266 (280)
+ .-+..|+++.+..+.
T Consensus 80 ~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 80 ANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCC
Confidence 0 125689998876653
No 417
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.79 E-value=98 Score=28.04 Aligned_cols=83 Identities=17% Similarity=0.017 Sum_probs=60.5
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----------C
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----------L 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----------~ 251 (280)
.+++++=-|+-.|+ .+..|+.+ +++|+-..-+....+.+.+.+... ....++.+.+.|+.++. -
T Consensus 34 ~~~~~vVTGansGIG~eta~~La~~--Ga~Vv~~~R~~~~~~~~~~~i~~~-~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 34 SGKVALVTGATSGIGFETARELALR--GAHVVLACRNEERGEEAKEQIQKG-KANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred CCcEEEEECCCCchHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 55677878876665 55556666 689999989887777777777653 35668899999987652 1
Q ss_pred CCCceeeEEechhhhhCCC
Q 048398 252 PSKSFDVVSLSYVVCLLSN 270 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh~l~d 270 (280)
...+.|+.|.+..+...+.
T Consensus 111 ~~~~ldvLInNAGV~~~~~ 129 (314)
T KOG1208|consen 111 KEGPLDVLINNAGVMAPPF 129 (314)
T ss_pred cCCCccEEEeCcccccCCc
Confidence 3567899999887766554
No 418
>PRK07774 short chain dehydrogenase; Provisional
Probab=53.48 E-value=83 Score=26.45 Aligned_cols=77 Identities=12% Similarity=0.016 Sum_probs=48.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC----------C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL----------P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 252 (280)
..+++|=.|++ |..+..+++.+ .+.+|++++.++.........+... ..++.++.+|+.+..- .
T Consensus 5 ~~k~vlItGas-g~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 5 DDKVAIVTGAA-GGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD---GGTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45678877754 44444444433 3679999999876665554444332 2357788888876420 0
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
.+..|+|+.+...
T Consensus 81 ~~~id~vi~~ag~ 93 (250)
T PRK07774 81 FGGIDYLVNNAAI 93 (250)
T ss_pred hCCCCEEEECCCC
Confidence 1358999987654
No 419
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=53.46 E-value=17 Score=27.54 Aligned_cols=33 Identities=33% Similarity=0.264 Sum_probs=27.9
Q ss_pred CCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 048398 195 SVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLK 228 (280)
Q Consensus 195 GtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~ 228 (280)
|.|..+..+++.. +++|+++|.++.-++.+++.
T Consensus 1 ~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-GAKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHc-CCEEEEEECCHHHHHHHHhh
Confidence 5688999999988 49999999999888877654
No 420
>PRK08265 short chain dehydrogenase; Provisional
Probab=53.34 E-value=68 Score=27.49 Aligned_cols=73 Identities=11% Similarity=0.043 Sum_probs=45.4
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP---- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 252 (280)
+.+++|=.|++.|. ++..+++. +++|+.+|.++.-++...+.. ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAA--GARVAIVDIDADNGAAVAASL------GERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh------CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 45788888866553 33334444 779999999876444333221 236788899987642 11
Q ss_pred -CCceeeEEechhh
Q 048398 253 -SKSFDVVSLSYVV 265 (280)
Q Consensus 253 -~~sfDlVi~~~vl 265 (280)
-+..|+++.+...
T Consensus 77 ~~g~id~lv~~ag~ 90 (261)
T PRK08265 77 RFGRVDILVNLACT 90 (261)
T ss_pred HhCCCCEEEECCCC
Confidence 1357988877553
No 421
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=53.07 E-value=84 Score=26.49 Aligned_cols=78 Identities=18% Similarity=-0.009 Sum_probs=49.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
..++||=.|+ +|.++..+++.+ .+.+|++++.++.........+... ..++.++.+|+.+.. + .
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA---GGKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3456776665 455566655543 3679999999988766655555433 357888999987532 0 0
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
.+..|+|+.+....
T Consensus 79 ~~~~d~vi~~a~~~ 92 (258)
T PRK12429 79 FGGVDILVNNAGIQ 92 (258)
T ss_pred cCCCCEEEECCCCC
Confidence 13579998766543
No 422
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=52.72 E-value=96 Score=24.09 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=26.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhC---CCCeEEEEeCCHHHHHHHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF---PSAKVTGLDLSPYFLAVAQLK 228 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~---p~~~v~gvDisp~~l~~A~~~ 228 (280)
+.++|+-+||| ..+..+++.+ ...+++.+|.++...+...+.
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 57889999986 3333333322 136899999987765554443
No 423
>PLN02253 xanthoxin dehydrogenase
Probab=52.58 E-value=71 Score=27.61 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=47.0
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
..+++|=.|++.| ++..+++.+ .+++|+++|.++...+.....+. ...++.++.+|+.+.. +.
T Consensus 17 ~~k~~lItGas~g-IG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 17 LGKVALVTGGATG-IGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG----GEPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc----CCCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 4667888886544 344444332 27899999998765544433331 1346889999987642 00
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-+..|+++.+..+
T Consensus 92 ~g~id~li~~Ag~ 104 (280)
T PLN02253 92 FGTLDIMVNNAGL 104 (280)
T ss_pred hCCCCEEEECCCc
Confidence 1358998877654
No 424
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=52.17 E-value=28 Score=34.70 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=41.0
Q ss_pred CcEEEECCCC-ChhH-HHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC----CCCceeeEE
Q 048398 187 RDILDIGCSV-GVST-KCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL----PSKSFDVVS 260 (280)
Q Consensus 187 ~~ILDiGcGt-G~~a-~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~----~~~sfDlVi 260 (280)
.+|+=+|||. |... ..+.+. +.+++.+|.++..++.+++. ....+.||..+... .-+..|+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~---------g~~v~~GDat~~~~L~~agi~~A~~vv 469 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKF---------GMKVFYGDATRMDLLESAGAAKAEVLI 469 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhc---------CCeEEEEeCCCHHHHHhcCCCcCCEEE
Confidence 5677677663 3322 223333 67899999999988877542 24688999877531 223567777
Q ss_pred ec
Q 048398 261 LS 262 (280)
Q Consensus 261 ~~ 262 (280)
+.
T Consensus 470 v~ 471 (621)
T PRK03562 470 NA 471 (621)
T ss_pred EE
Confidence 54
No 425
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.90 E-value=97 Score=29.50 Aligned_cols=73 Identities=14% Similarity=-0.065 Sum_probs=42.4
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHH-HHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEec
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYF-LAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLS 262 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~-l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~ 262 (280)
..++|+=+|+| +|..+..++... +.+|+++|.++.. .....+.++.. .+++..+..... ...+|+|+..
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~~~~~~~~~~~l~~~-----gv~~~~~~~~~~---~~~~D~Vv~s 85 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLEL-GARVTVVDDGDDERHRALAAILEAL-----GATVRLGPGPTL---PEDTDLVVTS 85 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhhHHHHHHHHHc-----CCEEEECCCccc---cCCCCEEEEC
Confidence 56789999988 554333333322 7799999976542 22223344443 466665543321 2348999877
Q ss_pred hhhh
Q 048398 263 YVVC 266 (280)
Q Consensus 263 ~vlh 266 (280)
-.+.
T Consensus 86 ~Gi~ 89 (480)
T PRK01438 86 PGWR 89 (480)
T ss_pred CCcC
Confidence 6654
No 426
>PRK06138 short chain dehydrogenase; Provisional
Probab=51.82 E-value=82 Score=26.50 Aligned_cols=75 Identities=13% Similarity=0.002 Sum_probs=46.9
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-C---------
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-L--------- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~--------- 251 (280)
+++++|=.||+.|. ++..+++. +++|++++-++........... . ..++.++.+|+.+.. +
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~-~---~~~~~~~~~D~~~~~~~~~~~~~i~~ 77 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFARE--GARVVVADRDAEAAERVAAAIA-A---GGRAFARQGDVGSAEAVEALVDFVAA 77 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHC--CCeEEEecCCHHHHHHHHHHHh-c---CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46788888886443 23334443 6899999988766555444433 1 346888999987642 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+.+|+|+.+...
T Consensus 78 ~~~~id~vi~~ag~ 91 (252)
T PRK06138 78 RWGRLDVLVNNAGF 91 (252)
T ss_pred HcCCCCEEEECCCC
Confidence 01368988876554
No 427
>PRK07074 short chain dehydrogenase; Provisional
Probab=51.77 E-value=75 Score=26.95 Aligned_cols=73 Identities=23% Similarity=0.216 Sum_probs=44.8
Q ss_pred CcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----CC
Q 048398 187 RDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP-----SK 254 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 254 (280)
+++|=.|++.|. +..+++.+ .+++|++++.++.-.+.....+. ..++.++.+|+.+.. +. .+
T Consensus 3 k~ilItGat~~i-G~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 3 RTALVTGAAGGI-GQALARRFLAAGDRVLALDIDAAALAAFADALG-----DARFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred CEEEEECCcchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467777776654 33333322 26799999998766554443331 236788899986642 11 13
Q ss_pred ceeeEEechhh
Q 048398 255 SFDVVSLSYVV 265 (280)
Q Consensus 255 sfDlVi~~~vl 265 (280)
.+|+|+.+...
T Consensus 77 ~~d~vi~~ag~ 87 (257)
T PRK07074 77 PVDVLVANAGA 87 (257)
T ss_pred CCCEEEECCCC
Confidence 58999887754
No 428
>PRK06720 hypothetical protein; Provisional
Probab=50.77 E-value=1.2e+02 Score=24.61 Aligned_cols=78 Identities=17% Similarity=0.073 Sum_probs=49.0
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC---------C-
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG---------L- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~---------~- 251 (280)
+++.+|-.|.+.|. .+..+++. +.+|+.+|.++..+..+.+.+... ...+.++..|..+.. .
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~--G~~V~l~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~v~~~~~ 89 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQ--GAKVIVTDIDQESGQATVEEITNL---GGEALFVSYDMEKQGDWQRVISITLN 89 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 56778888877665 33344444 689999999887666554554432 235667788875431 0
Q ss_pred CCCceeeEEechhhhh
Q 048398 252 PSKSFDVVSLSYVVCL 267 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh~ 267 (280)
.-+..|+++.+..+..
T Consensus 90 ~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 90 AFSRIDMLFQNAGLYK 105 (169)
T ss_pred HcCCCCEEEECCCcCC
Confidence 1245798888866544
No 429
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=50.74 E-value=43 Score=28.32 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=39.8
Q ss_pred CCCcEEEECCCCChhHHHHHhh----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADK----FPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS 249 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~----~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~ 249 (280)
++..|+++|.-.|..++..+.. +...+|+++|++-..++-+... ..+|.|+.++..+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~i~f~egss~dp 130 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPDILFIEGSSTDP 130 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCCeEEEeCCCCCH
Confidence 7899999999999877665543 2337899999985544332211 35788888886553
No 430
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=50.50 E-value=90 Score=26.52 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=45.6
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.+++|=.|++.|. ++..+++. +++|+.+|.++. .....+.+... ..++.++.+|+.+.. +
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~--G~~v~~~~r~~~-~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAE--GARVVLVDRSEL-VHEVAAELRAA---GGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCchH-HHHHHHHHHhc---CCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 56788888877664 33334444 789999999864 33333333322 346778888887631 0
Q ss_pred CCCceeeEEechh
Q 048398 252 PSKSFDVVSLSYV 264 (280)
Q Consensus 252 ~~~sfDlVi~~~v 264 (280)
.-+.+|+++.+..
T Consensus 81 ~~~~id~lv~nAg 93 (260)
T PRK12823 81 AFGRIDVLINNVG 93 (260)
T ss_pred HcCCCeEEEECCc
Confidence 0145899887764
No 431
>PRK08226 short chain dehydrogenase; Provisional
Probab=50.35 E-value=85 Score=26.72 Aligned_cols=77 Identities=22% Similarity=0.202 Sum_probs=46.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
..+++|=.|++.|. +..+++.+ .+++|++++.++...+.+.+. ... ..++.++.+|+.+.. + .
T Consensus 5 ~~~~~lItG~s~gi-G~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 5 TGKTALITGALQGI-GEGIARVFARHGANLILLDISPEIEKLADEL-CGR---GHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-HHh---CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46788888876554 33333332 278999999887543333322 222 246788889886631 0 0
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
.+..|+|+.+....
T Consensus 80 ~~~id~vi~~ag~~ 93 (263)
T PRK08226 80 EGRIDILVNNAGVC 93 (263)
T ss_pred cCCCCEEEECCCcC
Confidence 13579998877653
No 432
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.34 E-value=81 Score=27.99 Aligned_cols=76 Identities=13% Similarity=0.005 Sum_probs=47.8
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSP-YFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L---- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp-~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 251 (280)
+.+++|=.|++.|. ++..+++. +++|+.+|.+. ..++...+.+... ..++.++.+|+.+.. +
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~--Ga~Vv~~~~~~~~~~~~~~~~i~~~---g~~~~~~~~Dv~d~~~~~~~~~~~~ 85 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARL--GATVVVNDVASALDASDVLDEIRAA---GAKAVAVAGDISQRATADELVATAV 85 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEecCCchhHHHHHHHHHHhc---CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 67789988888775 44444554 78999998753 3343333444332 346788888886531 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+..|+++.+..+
T Consensus 86 ~~g~iD~li~nAG~ 99 (306)
T PRK07792 86 GLGGLDIVVNNAGI 99 (306)
T ss_pred HhCCCCEEEECCCC
Confidence 12468999887654
No 433
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=50.14 E-value=38 Score=28.60 Aligned_cols=42 Identities=26% Similarity=0.183 Sum_probs=33.0
Q ss_pred CCCcEEEECCCC-ChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 048398 185 EIRDILDIGCSV-GVSTKCLADKFPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcGt-G~~a~~l~~~~p~~~v~gvDisp~~l~~A~~ 227 (280)
++.+||-.|+|. |..+..+++.. +.+|++++.++...+.++.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH
Confidence 677999999985 66777777765 6899999999877666643
No 434
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=50.13 E-value=34 Score=30.31 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=33.5
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~ 227 (280)
...+||..||| .|..+..+++.. +.+|++++.++...+.+++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH
Confidence 56688888876 578888888876 6889999999988877754
No 435
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=50.07 E-value=66 Score=28.74 Aligned_cols=80 Identities=19% Similarity=0.081 Sum_probs=58.4
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----------C
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----------L 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----------~ 251 (280)
.++.||==||++|+ ++..+++. +++++-+-....-++...+.+.+.+ ...++..+++|..+.. .
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~--G~~l~lvar~~rrl~~v~~~l~~~~-~~~~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKR--GAKLVLVARRARRLERVAEELRKLG-SLEKVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhC--CCceEEeehhhhhHHHHHHHHHHhC-CcCccEEEeCccCCHHHHHHHHHHHHH
Confidence 68899999999997 66666666 7777777777777777766655551 2226999999987753 1
Q ss_pred CCCceeeEEechhhhh
Q 048398 252 PSKSFDVVSLSYVVCL 267 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh~ 267 (280)
.-+..|+.+.|..+..
T Consensus 88 ~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISL 103 (282)
T ss_pred hcCCCCEEEecCcccc
Confidence 2456899999987765
No 436
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=49.98 E-value=40 Score=30.50 Aligned_cols=75 Identities=16% Similarity=0.034 Sum_probs=42.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CCCCcee
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LPSKSFD 257 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~sfD 257 (280)
++++||=.| |+|..+..+++.+ .+.+|+++|.++........... ...++.++.+|+.+.. +....+|
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 77 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN----LAKKIEDHFGDIRDAAKLRKAIAEFKPE 77 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh----hcCCceEEEccCCCHHHHHHHHhhcCCC
Confidence 456788777 4555555554433 36789999987653322211111 1236778888886532 2222468
Q ss_pred eEEechh
Q 048398 258 VVSLSYV 264 (280)
Q Consensus 258 lVi~~~v 264 (280)
+|+....
T Consensus 78 ~vih~A~ 84 (349)
T TIGR02622 78 IVFHLAA 84 (349)
T ss_pred EEEECCc
Confidence 8775554
No 437
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.96 E-value=30 Score=32.24 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=53.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhCC-CCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFP-SAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG 250 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p-~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~ 250 (280)
.+.+|+|..|-.|.-+..++...+ ..+++|+|.++.-.+.-++.+... +...+..+++|+..++
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~a--g~~~~~~~~~df~~t~ 277 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIA--GVSIVESVEGDFLNTA 277 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHc--CCCccccccccccCCC
Confidence 678999999999999888887664 568999999999988888888776 4566777789988763
No 438
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=49.49 E-value=57 Score=28.96 Aligned_cols=79 Identities=10% Similarity=-0.018 Sum_probs=45.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-CC--CCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-LP--SKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~sfDlV 259 (280)
..++||=.| |+|..+..+++.+ .+.+|++++.++............. +...+++++.+|+.+.. +. -...|+|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALD-GAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhcc-CCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 456788777 5666666655543 3678888776655433332222211 12357899999987643 11 1247888
Q ss_pred Eechhh
Q 048398 260 SLSYVV 265 (280)
Q Consensus 260 i~~~vl 265 (280)
+.....
T Consensus 82 ih~A~~ 87 (325)
T PLN02989 82 FHTASP 87 (325)
T ss_pred EEeCCC
Confidence 876554
No 439
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=48.91 E-value=44 Score=27.98 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=23.2
Q ss_pred CCCcEEEECCC-CCh-hHHHHHhhCCCCeEEEEeCC
Q 048398 185 EIRDILDIGCS-VGV-STKCLADKFPSAKVTGLDLS 218 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~-~a~~l~~~~p~~~v~gvDis 218 (280)
...+||=+||| .|. .+..|+..+ -.+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCC
Confidence 67899999998 454 444455542 3489999987
No 440
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=48.65 E-value=1.7e+02 Score=25.50 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=44.0
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
..+++|=+|.- +|......... .++|+.+|+.|++.... ..+|.|... ... . ...+|+|+=.-
T Consensus 41 ~~k~~lI~G~YltG~~iA~~L~~--~~eV~lvDI~p~lk~ll----------~~~i~F~~~-~~~--~-~~~~DlIID~T 104 (252)
T PF06690_consen 41 EFKQALIFGAYLTGNFIASALSK--KCEVTLVDIHPHLKELL----------NENIKFMEF-RNG--L-EGNPDLIIDTT 104 (252)
T ss_pred ccceEEEEEEEeehHHHHHHhcc--CceEEEEeCcHHHHHHh----------cCCCceeec-cCC--C-CCCCCEEEECC
Confidence 45588988854 55554444444 34999999999876643 235677622 111 1 34689999777
Q ss_pred hhhhCC
Q 048398 264 VVCLLS 269 (280)
Q Consensus 264 vlh~l~ 269 (280)
.|.-+.
T Consensus 105 GlGGv~ 110 (252)
T PF06690_consen 105 GLGGVD 110 (252)
T ss_pred CCCCCC
Confidence 776664
No 441
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.18 E-value=7.1 Score=31.72 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=29.1
Q ss_pred eEEEEeCCCCCCCCCCceeeEEechhhhhCCChhhhhhhh
Q 048398 239 ISWVHAIGEDSGLPSKSFDVVSLSYVVCLLSNSEHLSVER 278 (280)
Q Consensus 239 v~~~~~d~~~~~~~~~sfDlVi~~~vlh~l~d~~~~~~l~ 278 (280)
+.+++-.-...+|.+++.|+|++.+|++|+.-.+-+.+++
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alk 70 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALK 70 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444568899999999999999998766655543
No 442
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=48.07 E-value=45 Score=29.26 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=40.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGED 248 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~ 248 (280)
+..+||-+|.++|.....+.+.. |..-|++++.|+..=..... +.+ ...||--+.-|+..
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~n-mAk---kRtNiiPIiEDArh 216 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLIN-MAK---KRTNIIPIIEDARH 216 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHH-Hhh---ccCCceeeeccCCC
Confidence 67899999999999888888764 77789999999764332221 111 13455555555543
No 443
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=48.06 E-value=32 Score=31.48 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=32.0
Q ss_pred CCCcEEEECCCCCh----hHHHHHhhCCCCeEEEEeCCHHHH
Q 048398 185 EIRDILDIGCSVGV----STKCLADKFPSAKVTGLDLSPYFL 222 (280)
Q Consensus 185 ~~~~ILDiGcGtG~----~a~~l~~~~p~~~v~gvDisp~~l 222 (280)
..-.++-.|.|||. .++.+.++.|..+|+++|.....+
T Consensus 211 g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~ 252 (362)
T KOG1252|consen 211 GKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIV 252 (362)
T ss_pred CCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCccee
Confidence 56678999999995 788999999999999999875544
No 444
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=47.87 E-value=1.1e+02 Score=25.38 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=46.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
..++||=.|+ +|.++..+++.+ -+.+|++++-++...+.....+... ..++.++.+|+.+.. +.
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA---GGEARVLVFDVSDEAAVRALIEAAVEA 79 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 3467887776 555555554433 2668999999887665544444432 346788889886532 10
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-++.|.|+.+...
T Consensus 80 ~~~id~vi~~ag~ 92 (246)
T PRK05653 80 FGALDILVNNAGI 92 (246)
T ss_pred hCCCCEEEECCCc
Confidence 1346888766543
No 445
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=47.59 E-value=71 Score=24.93 Aligned_cols=76 Identities=16% Similarity=0.061 Sum_probs=49.9
Q ss_pred cEEEECCCCCh---hHHHHHhhCCCCeEEEEeCC--HHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----------CC
Q 048398 188 DILDIGCSVGV---STKCLADKFPSAKVTGLDLS--PYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----------LP 252 (280)
Q Consensus 188 ~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDis--p~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 252 (280)
++|=.|++.|. ++..+++. .+.+|+.+..+ ....+.....+... ..++.++++|+.+.. ..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKAP---GAKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHT---TSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhc-CceEEEEeeeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 56777877664 44445554 24478888888 55555555555544 368999999986632 12
Q ss_pred CCceeeEEechhhhh
Q 048398 253 SKSFDVVSLSYVVCL 267 (280)
Q Consensus 253 ~~sfDlVi~~~vlh~ 267 (280)
.++.|+++.+.....
T Consensus 78 ~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 78 FGPLDILINNAGIFS 92 (167)
T ss_dssp HSSESEEEEECSCTT
T ss_pred ccccccccccccccc
Confidence 357999998877655
No 446
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=47.54 E-value=39 Score=30.53 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=33.4
Q ss_pred CCCcEEEECCCC-ChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 048398 185 EIRDILDIGCSV-GVSTKCLADKFPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcGt-G~~a~~l~~~~p~~~v~gvDisp~~l~~A~~ 227 (280)
.+.+||=+|||. |..+..+++.. +++|+++|.++.-++.+++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH
Confidence 577899999864 66777778776 6689999999988877754
No 447
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=47.18 E-value=1e+02 Score=28.68 Aligned_cols=76 Identities=17% Similarity=0.087 Sum_probs=51.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhCCC----CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC---------C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKFPS----AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG---------L 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~p~----~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~---------~ 251 (280)
++.+|||+....|.-+..+.+..-. ..|++-|.++.-+....+.+... -..++.+...++...| .
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l--~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL--PSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc--CCcceeeecccceeccccccccCchh
Confidence 7889999999999988888776422 27999999998887777776433 2234445544443322 1
Q ss_pred CCCceeeEEec
Q 048398 252 PSKSFDVVSLS 262 (280)
Q Consensus 252 ~~~sfDlVi~~ 262 (280)
....||-|+|-
T Consensus 233 ~~~~fDrVLvD 243 (375)
T KOG2198|consen 233 EQLKFDRVLVD 243 (375)
T ss_pred hhhhcceeEEe
Confidence 22358888874
No 448
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=47.03 E-value=1.1e+02 Score=26.12 Aligned_cols=61 Identities=15% Similarity=-0.031 Sum_probs=38.7
Q ss_pred cEEEECCCCCh---hHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCC
Q 048398 188 DILDIGCSVGV---STKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDS 249 (280)
Q Consensus 188 ~ILDiGcGtG~---~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~ 249 (280)
.+|-.|++.|. ++..+++.. .+++|+.++.++..++...+.+... ....++.++.+|+.+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~v~~~~~Dl~~~ 67 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAE-RSGLRVVRVSLDLGAE 67 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhc-CCCceEEEEEeccCCH
Confidence 46777877665 223333321 3778999999888777766666542 1134688889998653
No 449
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=46.94 E-value=70 Score=28.83 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=28.2
Q ss_pred CCcEEEECCCCCh----hHHHHHhhCCCCeEEEEeCCH
Q 048398 186 IRDILDIGCSVGV----STKCLADKFPSAKVTGLDLSP 219 (280)
Q Consensus 186 ~~~ILDiGcGtG~----~a~~l~~~~p~~~v~gvDisp 219 (280)
....+=.|+|||. .+..|.+.+|+.+++++|...
T Consensus 169 ~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~ 206 (300)
T COG0031 169 KVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEG 206 (300)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCC
Confidence 3678889999996 667778888999999999864
No 450
>PRK06180 short chain dehydrogenase; Provisional
Probab=46.92 E-value=91 Score=26.97 Aligned_cols=75 Identities=17% Similarity=0.009 Sum_probs=45.1
Q ss_pred CCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----C
Q 048398 186 IRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP-----S 253 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 253 (280)
.++||=.||+.|. +..+++.+ .+++|++++.++..++..... ...++.++.+|+.+.. +. -
T Consensus 4 ~~~vlVtGasggi-G~~la~~l~~~G~~V~~~~r~~~~~~~l~~~------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 76 (277)
T PRK06180 4 MKTWLITGVSSGF-GRALAQAALAAGHRVVGTVRSEAARADFEAL------HPDRALARLLDVTDFDAIDAVVADAEATF 76 (277)
T ss_pred CCEEEEecCCChH-HHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh------cCCCeeEEEccCCCHHHHHHHHHHHHHHh
Confidence 4578888876654 33333322 278999999987655432221 1346778888886532 00 1
Q ss_pred CceeeEEechhhhh
Q 048398 254 KSFDVVSLSYVVCL 267 (280)
Q Consensus 254 ~sfDlVi~~~vlh~ 267 (280)
+.+|+|+.+....+
T Consensus 77 ~~~d~vv~~ag~~~ 90 (277)
T PRK06180 77 GPIDVLVNNAGYGH 90 (277)
T ss_pred CCCCEEEECCCccC
Confidence 35788887765543
No 451
>PRK09135 pteridine reductase; Provisional
Probab=46.87 E-value=1.2e+02 Score=25.41 Aligned_cols=78 Identities=10% Similarity=-0.066 Sum_probs=45.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSP-YFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP---- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp-~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 252 (280)
..++||=.|++ |.++..+++.+ .+.+|++++.+. .-.......+... ....+.++.+|+.+.. +.
T Consensus 5 ~~~~vlItGa~-g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (249)
T PRK09135 5 SAKVALITGGA-RRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNAL--RPGSAAALQADLLDPDALPELVAACVA 81 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh--cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 45679999975 44444444433 378999999753 3233333333222 1346788999987642 11
Q ss_pred -CCceeeEEechhh
Q 048398 253 -SKSFDVVSLSYVV 265 (280)
Q Consensus 253 -~~sfDlVi~~~vl 265 (280)
-+..|+|+.+...
T Consensus 82 ~~~~~d~vi~~ag~ 95 (249)
T PRK09135 82 AFGRLDALVNNASS 95 (249)
T ss_pred HcCCCCEEEECCCC
Confidence 1347888877654
No 452
>PRK06198 short chain dehydrogenase; Provisional
Probab=46.52 E-value=98 Score=26.23 Aligned_cols=77 Identities=13% Similarity=-0.005 Sum_probs=46.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAK-VTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~-v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.++||=.|++.| ++..+++.+ .+++ |++++.++..+......+... ..++.++..|+.+.. +
T Consensus 5 ~~k~vlItGa~g~-iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 5 DGKVALVTGGTQG-LGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL---GAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc---CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 5678888886544 444444333 2567 999998876555444344322 346788888886532 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+..|+|+.+...
T Consensus 81 ~~g~id~li~~ag~ 94 (260)
T PRK06198 81 AFGRLDALVNAAGL 94 (260)
T ss_pred HhCCCCEEEECCCc
Confidence 01357888877654
No 453
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=46.11 E-value=76 Score=27.10 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=40.0
Q ss_pred cEEEECCCC-Ch-hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----CCCCceeeEEe
Q 048398 188 DILDIGCSV-GV-STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----LPSKSFDVVSL 261 (280)
Q Consensus 188 ~ILDiGcGt-G~-~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~sfDlVi~ 261 (280)
+++=+|||. |. ++..|.+. +..|+.+|.++..++..... ...++.+++|..+.. ..-..+|++++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~~-------~~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLAD-------ELDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhhh-------hcceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 455667762 22 33334444 67999999999876653321 124678889886642 12235888876
Q ss_pred c
Q 048398 262 S 262 (280)
Q Consensus 262 ~ 262 (280)
.
T Consensus 73 ~ 73 (225)
T COG0569 73 A 73 (225)
T ss_pred e
Confidence 4
No 454
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=46.06 E-value=1.1e+02 Score=26.01 Aligned_cols=76 Identities=5% Similarity=-0.129 Sum_probs=46.1
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEe-CCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------C-
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLD-LSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------L- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvD-isp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~- 251 (280)
++++||=.|++.|. ++..+++. +++|+.+. .++..++...+.+... ...++.++.+|+.+.. +
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQS--GVNIAFTYNSNVEEANKIAEDLEQK--YGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 56788888877665 44444544 77888775 3444444443333322 2347889999987632 0
Q ss_pred -CCCceeeEEechh
Q 048398 252 -PSKSFDVVSLSYV 264 (280)
Q Consensus 252 -~~~sfDlVi~~~v 264 (280)
.-+.+|+++.+..
T Consensus 83 ~~~g~id~lv~nAg 96 (260)
T PRK08416 83 EDFDRVDFFISNAI 96 (260)
T ss_pred HhcCCccEEEECcc
Confidence 1246899887764
No 455
>PRK07831 short chain dehydrogenase; Provisional
Probab=45.89 E-value=1.2e+02 Score=25.77 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=49.8
Q ss_pred CCCcEEEECCC-CCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C----
Q 048398 185 EIRDILDIGCS-VGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L---- 251 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 251 (280)
..+++|=.|++ .|. .+..+++. +++|+.+|.++..++...+.+... ....++.++.+|+.+.. +
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEE--GARVVISDIHERRLGETADELAAE-LGLGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 46788888863 343 33334444 678999999887777666665442 11246888899986531 0
Q ss_pred -CCCceeeEEechhh
Q 048398 252 -PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 -~~~sfDlVi~~~vl 265 (280)
.-++.|+++.+..+
T Consensus 93 ~~~g~id~li~~ag~ 107 (262)
T PRK07831 93 ERLGRLDVLVNNAGL 107 (262)
T ss_pred HHcCCCCEEEECCCC
Confidence 01468998887765
No 456
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=45.65 E-value=1.1e+02 Score=25.78 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=45.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
++++||=.|++.|. +..+++.+ .+.+|++++.++. ....+.+... ..++.++.+|+.+.. + .
T Consensus 4 ~~k~vlItGas~gI-G~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 4 EGKVALVTGANTGL-GQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL---GRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc---CCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789989987654 33333332 2679999997652 2333333332 346888899986532 0 1
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
.+..|+++.+....
T Consensus 78 ~~~~d~li~~ag~~ 91 (248)
T TIGR01832 78 FGHIDILVNNAGII 91 (248)
T ss_pred cCCCCEEEECCCCC
Confidence 13589998776543
No 457
>PRK07775 short chain dehydrogenase; Provisional
Probab=45.34 E-value=1.2e+02 Score=26.11 Aligned_cols=77 Identities=12% Similarity=-0.130 Sum_probs=46.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
+.+++|=.|++ |.++..+++.+ .+.+|++++.++.........+... ..++.++.+|+.+.. +.
T Consensus 9 ~~~~vlVtGa~-g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (274)
T PRK07775 9 DRRPALVAGAS-SGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD---GGEAVAFPLDVTDPDSVKSFVAQAEEA 84 (274)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 44678888865 44455544433 2678999888776555444444332 246788888887532 00
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-+..|.|+.+...
T Consensus 85 ~~~id~vi~~Ag~ 97 (274)
T PRK07775 85 LGEIEVLVSGAGD 97 (274)
T ss_pred cCCCCEEEECCCc
Confidence 1357888866543
No 458
>PRK05872 short chain dehydrogenase; Provisional
Probab=44.98 E-value=1.1e+02 Score=26.95 Aligned_cols=76 Identities=20% Similarity=0.126 Sum_probs=47.5
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.+++|=.|++.|. .+..+++. +++|+.++.++..++...+.+. ....+..+.+|+.+.. +
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~l~~~~~~l~----~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHAR--GAKLALVDLEEAELAALAAELG----GDDRVLTVVADVTDLAAMQAAAEEAVE 81 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc----CCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 56789988876664 33333433 7899999998876655444432 1234556668876531 0
Q ss_pred CCCceeeEEechhhh
Q 048398 252 PSKSFDVVSLSYVVC 266 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh 266 (280)
.-++.|+++.+..+.
T Consensus 82 ~~g~id~vI~nAG~~ 96 (296)
T PRK05872 82 RFGGIDVVVANAGIA 96 (296)
T ss_pred HcCCCCEEEECCCcC
Confidence 014689999887654
No 459
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=44.96 E-value=8.6 Score=28.29 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=13.7
Q ss_pred cEEEECCCCChhHHHHHhh
Q 048398 188 DILDIGCSVGVSTKCLADK 206 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~ 206 (280)
--+|||||.|...-+..+.
T Consensus 5 gNIDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 5 GNIDIGCGAGNTMDAAFRS 23 (124)
T ss_pred CccccccCCCcchhhhhhc
Confidence 3579999999866555444
No 460
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=44.89 E-value=45 Score=32.41 Aligned_cols=42 Identities=26% Similarity=0.312 Sum_probs=33.6
Q ss_pred CCCcEEEECCCC-ChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 048398 185 EIRDILDIGCSV-GVSTKCLADKFPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcGt-G~~a~~l~~~~p~~~v~gvDisp~~l~~A~~ 227 (280)
++.+++=+|||. |..+..+++.. ++.|+++|.++..++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 568999999995 57777777766 6789999999997776665
No 461
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=44.33 E-value=1.2e+02 Score=25.99 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=44.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
+.+++|=.|++.|. +..+++.+ .+++|+++|.++..++.... .. ..++.++.+|+.+.. +.
T Consensus 4 ~~k~vlItGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~l~~---~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 4 KGEVVLVTGGASGL-GRAIVDRFVAEGARVAVLDKSAAGLQELEA---AH---GDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred CCcEEEEECCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---hc---CCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 45678888876554 33333322 37899999998765544322 11 346788888886531 10
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-+..|+++.+..+
T Consensus 77 ~g~id~li~~Ag~ 89 (262)
T TIGR03325 77 FGKIDCLIPNAGI 89 (262)
T ss_pred hCCCCEEEECCCC
Confidence 1457988887653
No 462
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=43.80 E-value=61 Score=30.44 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=41.7
Q ss_pred cEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC----CCCCceeeEEe
Q 048398 188 DILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG----LPSKSFDVVSL 261 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~sfDlVi~ 261 (280)
+|+=+|| |..+..+++.. .+.+|+++|.++..++.+++. ..+.++.+|..+.. ..-..+|.|++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR--------LDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------cCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 4555666 77777776643 267899999999877665432 14678888876532 11235777776
Q ss_pred c
Q 048398 262 S 262 (280)
Q Consensus 262 ~ 262 (280)
.
T Consensus 72 ~ 72 (453)
T PRK09496 72 V 72 (453)
T ss_pred e
Confidence 4
No 463
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=43.80 E-value=18 Score=32.87 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=47.5
Q ss_pred CCcEEEECCCCCh----hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CCCCce
Q 048398 186 IRDILDIGCSVGV----STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LPSKSF 256 (280)
Q Consensus 186 ~~~ILDiGcGtG~----~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~sf 256 (280)
+.+||-.| |.|. .+..|.+. +-.|+++|---.....+-++.++.-+....|.|..+|+.+.+ |....|
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~~--gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~f 78 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLKR--GYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKF 78 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHhC--CCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCC
Confidence 34677666 3343 23344444 678999997655555555554443122478999999998754 344557
Q ss_pred eeEEechhhhh
Q 048398 257 DVVSLSYVVCL 267 (280)
Q Consensus 257 DlVi~~~vlh~ 267 (280)
|-|+-...+-.
T Consensus 79 d~V~Hfa~~~~ 89 (343)
T KOG1371|consen 79 DAVMHFAALAA 89 (343)
T ss_pred ceEEeehhhhc
Confidence 77765544433
No 464
>PRK05717 oxidoreductase; Validated
Probab=43.80 E-value=1.2e+02 Score=25.75 Aligned_cols=75 Identities=13% Similarity=-0.009 Sum_probs=45.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------C--C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------L--P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~--~ 252 (280)
..++||=.|++.| .+..+++.+ .+++|+.+|.++.-.....+ .. ..++.++.+|+.+.. . .
T Consensus 9 ~~k~vlItG~sg~-IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 9 NGRVALVTGAARG-IGLGIAAWLIAEGWQVVLADLDRERGSKVAK---AL---GENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CCCEEEEeCCcch-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---Hc---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 5678887776544 344433332 26799999988654333222 11 246788999987632 0 1
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
.+.+|+++.+....
T Consensus 82 ~g~id~li~~ag~~ 95 (255)
T PRK05717 82 FGRLDALVCNAAIA 95 (255)
T ss_pred hCCCCEEEECCCcc
Confidence 13589998877654
No 465
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=43.73 E-value=1.1e+02 Score=26.12 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=44.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
..+++|=.||+.|. +..+++.+ .+++|+++|.++. ....+.+... ..++.++.+|+.+.. + .
T Consensus 9 ~~k~~lItG~~~gI-G~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 9 EGKVAVVTGCDTGL-GQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL---GRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56788888876554 44443333 3789999987643 2222233322 346788888886531 1 1
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
.+..|+++.+...
T Consensus 83 ~~~~D~li~~Ag~ 95 (253)
T PRK08993 83 FGHIDILVNNAGL 95 (253)
T ss_pred hCCCCEEEECCCC
Confidence 1358998876654
No 466
>PRK05855 short chain dehydrogenase; Validated
Probab=43.71 E-value=1e+02 Score=29.58 Aligned_cols=79 Identities=13% Similarity=0.022 Sum_probs=50.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
+..++|=+|++.|. +..+++.+ .+.+|+.++.++..++.....+... ..++.++.+|+.+.. + .
T Consensus 314 ~~~~~lv~G~s~gi-G~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 314 SGKLVVVTGAGSGI-GRETALAFAREGAEVVASDIDEAAAERTAELIRAA---GAVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CCCEEEEECCcCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 45678877765543 44433332 3678999999987766655555443 346889999987642 0 1
Q ss_pred CCceeeEEechhhhh
Q 048398 253 SKSFDVVSLSYVVCL 267 (280)
Q Consensus 253 ~~sfDlVi~~~vlh~ 267 (280)
.+..|+++.+..+.+
T Consensus 390 ~g~id~lv~~Ag~~~ 404 (582)
T PRK05855 390 HGVPDIVVNNAGIGM 404 (582)
T ss_pred cCCCcEEEECCccCC
Confidence 245899998876543
No 467
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=43.58 E-value=1.8e+02 Score=24.91 Aligned_cols=75 Identities=13% Similarity=-0.016 Sum_probs=42.1
Q ss_pred cEEEECCCCChhHHHHHhhC--CCCeEEEEe-CCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC-------------
Q 048398 188 DILDIGCSVGVSTKCLADKF--PSAKVTGLD-LSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGL------------- 251 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~--p~~~v~gvD-isp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~------------- 251 (280)
.+|=.|++.|. +..+++.+ .+++|++++ .++..++...+.+... ...++.++.+|+.+..-
T Consensus 3 ~~lITGas~gI-G~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~ 79 (267)
T TIGR02685 3 AAVVTGAAKRI-GSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNAR--RPNSAVTCQADLSNSATLFSRCEAIIDACF 79 (267)
T ss_pred EEEEeCCCCcH-HHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhc--cCCceEEEEccCCCchhhHHHHHHHHHHHH
Confidence 56777877664 33333332 367888874 3444444443333322 12356677888876420
Q ss_pred -CCCceeeEEechhh
Q 048398 252 -PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 -~~~sfDlVi~~~vl 265 (280)
.-+..|+++.+...
T Consensus 80 ~~~g~iD~lv~nAG~ 94 (267)
T TIGR02685 80 RAFGRCDVLVNNASA 94 (267)
T ss_pred HccCCceEEEECCcc
Confidence 11468999987654
No 468
>PRK06701 short chain dehydrogenase; Provisional
Probab=43.47 E-value=1.1e+02 Score=26.76 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=45.1
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHH-HHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC---
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPY-FLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP--- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~-~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~--- 252 (280)
+.++||=.|++.|. ++..+++. +++|+.++.++. .++.....+... ..++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKE---GVKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhc---CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 46788888876554 33334443 788999887643 233333333322 346888999986532 11
Q ss_pred --CCceeeEEechhh
Q 048398 253 --SKSFDVVSLSYVV 265 (280)
Q Consensus 253 --~~sfDlVi~~~vl 265 (280)
-+..|+|+.+...
T Consensus 120 ~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 120 RELGRLDILVNNAAF 134 (290)
T ss_pred HHcCCCCEEEECCcc
Confidence 1357988876554
No 469
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=43.18 E-value=1.5e+02 Score=26.34 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=41.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCC-eEEEEeCCHHHHHHHHH---HHHhcCCCCCCeEEEEeCCCCCC-CC--CCc
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSA-KVTGLDLSPYFLAVAQL---KEKKGGPRKNPISWVHAIGEDSG-LP--SKS 255 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~-~v~gvDisp~~l~~A~~---~~~~~~~~~~~v~~~~~d~~~~~-~~--~~s 255 (280)
+.+++|=+|+| |. +..++..+ -++ +|+.++.++...+.+++ .+... ...+.+...|..+.. +. -..
T Consensus 125 ~~k~vlI~GAG-Ga-grAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~---~~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 125 KGKKLTVIGAG-GA-ATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE---VPECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred CCCEEEEECCc-HH-HHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc---CCCceeEEechhhhhHHHhhhcc
Confidence 56789999996 54 33333221 144 59999988632233332 22222 123344445554321 11 124
Q ss_pred eeeEEechhhhhCC
Q 048398 256 FDVVSLSYVVCLLS 269 (280)
Q Consensus 256 fDlVi~~~vlh~l~ 269 (280)
+|+|+.+-.+...+
T Consensus 200 ~DilINaTp~Gm~~ 213 (289)
T PRK12548 200 SDILVNATLVGMKP 213 (289)
T ss_pred CCEEEEeCCCCCCC
Confidence 69988877666544
No 470
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.17 E-value=90 Score=28.37 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=33.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHH
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVA 225 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A 225 (280)
....|+.+|||.-.+.+.+...+ +...++=+|.++......
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 67789999999999999998887 567888889876655444
No 471
>PRK07832 short chain dehydrogenase; Provisional
Probab=42.96 E-value=1.3e+02 Score=25.96 Aligned_cols=75 Identities=16% Similarity=0.006 Sum_probs=42.5
Q ss_pred cEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----CCCc
Q 048398 188 DILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----PSKS 255 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~s 255 (280)
++|=.|++.|. +..+++.+ .+++|+.++.++..++.....+... ....+.++.+|+.+.. + ..+.
T Consensus 2 ~vlItGas~gi-G~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 2 RCFVTGAASGI-GRATALRLAAQGAELFLTDRDADGLAQTVADARAL--GGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred EEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 45666765443 33333322 2678999998887666655554433 1223556677875421 0 1235
Q ss_pred eeeEEechhh
Q 048398 256 FDVVSLSYVV 265 (280)
Q Consensus 256 fDlVi~~~vl 265 (280)
.|+++.+...
T Consensus 79 id~lv~~ag~ 88 (272)
T PRK07832 79 MDVVMNIAGI 88 (272)
T ss_pred CCEEEECCCC
Confidence 7998877654
No 472
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=42.51 E-value=1.1e+02 Score=25.87 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=45.2
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
..+++|=.|++.| ++..+++.+ .+.+|+.+|.++..++...... ..++.++.+|+.+.. + .
T Consensus 5 ~~~~vlItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 5 QGKVALLTGAASG-IGEAVAERYLAEGARVVIADIKPARARLAALEI------GPAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh------CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567887775544 444444333 2789999999877655443332 235788888876532 0 0
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-+..|+++.+...
T Consensus 78 ~~~id~li~~ag~ 90 (257)
T PRK07067 78 FGGIDILFNNAAL 90 (257)
T ss_pred cCCCCEEEECCCc
Confidence 1357888876544
No 473
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=42.42 E-value=73 Score=30.06 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=28.6
Q ss_pred CCCcEEEECCCC-ChhHHHHHhhCCCCeEEEEeCCHHHH
Q 048398 185 EIRDILDIGCSV-GVSTKCLADKFPSAKVTGLDLSPYFL 222 (280)
Q Consensus 185 ~~~~ILDiGcGt-G~~a~~l~~~~p~~~v~gvDisp~~l 222 (280)
.+++|+=+|||. |......++.+ +++|+++|.+|.-.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRA 231 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhH
Confidence 688999999995 55555556655 78999999998643
No 474
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=41.74 E-value=1.2e+02 Score=25.17 Aligned_cols=76 Identities=13% Similarity=0.036 Sum_probs=43.0
Q ss_pred CcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----CCC
Q 048398 187 RDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----PSK 254 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 254 (280)
++||=.|+ +|.++..+++.+ .+.+|++++.++. +.+++..........++.++.+|+.+.. + ..+
T Consensus 3 k~vlItG~-s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 3 KIALVTGA-KRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46777775 444444444433 2679999998754 2222222211012346889999987632 1 023
Q ss_pred ceeeEEechhh
Q 048398 255 SFDVVSLSYVV 265 (280)
Q Consensus 255 sfDlVi~~~vl 265 (280)
.+|+++.+...
T Consensus 80 ~id~vi~~ag~ 90 (245)
T PRK12824 80 PVDILVNNAGI 90 (245)
T ss_pred CCCEEEECCCC
Confidence 58999877643
No 475
>PRK07806 short chain dehydrogenase; Provisional
Probab=41.73 E-value=1.6e+02 Score=24.75 Aligned_cols=77 Identities=17% Similarity=-0.041 Sum_probs=43.6
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSP-YFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP---- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp-~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 252 (280)
.++++|-.|++.| ++..+++.+ .+.+|++++.+. ...+.....+... ..++.++.+|+.+.. +.
T Consensus 5 ~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 5 PGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA---GGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678998887544 344443332 367898887754 2333333333322 346788889987632 00
Q ss_pred -CCceeeEEechhh
Q 048398 253 -SKSFDVVSLSYVV 265 (280)
Q Consensus 253 -~~sfDlVi~~~vl 265 (280)
-+..|+|+.+...
T Consensus 81 ~~~~~d~vi~~ag~ 94 (248)
T PRK07806 81 EFGGLDALVLNASG 94 (248)
T ss_pred hCCCCcEEEECCCC
Confidence 1357888766543
No 476
>PRK08278 short chain dehydrogenase; Provisional
Probab=41.62 E-value=1.2e+02 Score=26.20 Aligned_cols=77 Identities=10% Similarity=-0.012 Sum_probs=46.3
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHH-------HHHHHHHHHhcCCCCCCeEEEEeCCCCCC----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYF-------LAVAQLKEKKGGPRKNPISWVHAIGEDSG---- 250 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~-------l~~A~~~~~~~~~~~~~v~~~~~d~~~~~---- 250 (280)
+.+++|=.|++.|. ++..+++. +.+|+.++.+... +....+.+... ..++.++.+|+.+..
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~D~~~~~~i~~ 79 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARD--GANIVIAAKTAEPHPKLPGTIHTAAEEIEAA---GGQALPLVGDVRDEDQVAA 79 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEecccccccchhhHHHHHHHHHHhc---CCceEEEEecCCCHHHHHH
Confidence 45688888876654 33334444 6799999876431 22233333333 346888899986642
Q ss_pred -CC-----CCceeeEEechhhh
Q 048398 251 -LP-----SKSFDVVSLSYVVC 266 (280)
Q Consensus 251 -~~-----~~sfDlVi~~~vlh 266 (280)
+. -+.+|+++.+..+.
T Consensus 80 ~~~~~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 80 AVAKAVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHHHHHhCCCCEEEECCCCc
Confidence 11 13689999876653
No 477
>PRK07201 short chain dehydrogenase; Provisional
Probab=41.10 E-value=1.2e+02 Score=29.99 Aligned_cols=77 Identities=16% Similarity=-0.037 Sum_probs=49.3
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
..+++|=.|++.| ++..+++.+ .+++|++++.++..++.....+... ..++.++.+|+.+.. + .
T Consensus 370 ~~k~vlItGas~g-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 370 VGKVVLITGASSG-IGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK---GGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 3567777776554 344444332 2689999999988776665555433 346888999987632 1 0
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-+..|+++.+...
T Consensus 446 ~g~id~li~~Ag~ 458 (657)
T PRK07201 446 HGHVDYLVNNAGR 458 (657)
T ss_pred cCCCCEEEECCCC
Confidence 1358999987764
No 478
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.07 E-value=1.2e+02 Score=28.56 Aligned_cols=72 Identities=24% Similarity=0.105 Sum_probs=42.2
Q ss_pred CCCcEEEECCCCChh--HHHHHhhCCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEe
Q 048398 185 EIRDILDIGCSVGVS--TKCLADKFPSAKVTGLDLSP-YFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~--a~~l~~~~p~~~v~gvDisp-~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~ 261 (280)
+.++|+=+|+|.... +..+++. +++|+++|.++ ..+....+.+... .+++..++..+. . .+.+|+|+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~-~-~~~~d~vv~ 74 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQLKEALEELGEL-----GIELVLGEYPEE-F-LEGVDLVVV 74 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHHHHHhc-----CCEEEeCCcchh-H-hhcCCEEEE
Confidence 467889999876332 2223333 78999999975 2232222333332 356666666542 1 235898887
Q ss_pred chhh
Q 048398 262 SYVV 265 (280)
Q Consensus 262 ~~vl 265 (280)
+-.+
T Consensus 75 ~~g~ 78 (450)
T PRK14106 75 SPGV 78 (450)
T ss_pred CCCC
Confidence 7654
No 479
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=40.68 E-value=51 Score=29.29 Aligned_cols=42 Identities=14% Similarity=0.042 Sum_probs=30.2
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQ 226 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~ 226 (280)
+..++|=+||| .|.++..+++......|+++|.++..++.|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 45678888876 6778888888773335778899887766654
No 480
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=40.67 E-value=62 Score=29.97 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=22.8
Q ss_pred CCCcEEEECCC-CCh-hHHHHHhhCCCCeEEEEeCC
Q 048398 185 EIRDILDIGCS-VGV-STKCLADKFPSAKVTGLDLS 218 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~-~a~~l~~~~p~~~v~gvDis 218 (280)
...+|+=+||| .|. .+..|+..+ -.+++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 56789999998 455 344445543 3489999987
No 481
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=40.53 E-value=45 Score=24.42 Aligned_cols=57 Identities=26% Similarity=0.299 Sum_probs=32.5
Q ss_pred CcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEechhh
Q 048398 187 RDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSYVV 265 (280)
Q Consensus 187 ~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~vl 265 (280)
++|| +-||+|..+..++.. .++.++++ +-.+++.+.+..+..-....+|+|+..--+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k------------------~~~~~~~~---gi~~~v~a~~~~~~~~~~~~~Dvill~pqi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK------------------MNKAAEEY---GVPVKIAAGSYGAAGEKLDDADVVLLAPQV 60 (95)
T ss_pred cEEE-EECCCchhHHHHHHH------------------HHHHHHHC---CCcEEEEEecHHHHHhhcCCCCEEEECchH
Confidence 4566 789999876665543 12223333 224677777765542222358999987333
No 482
>PRK08628 short chain dehydrogenase; Provisional
Probab=40.47 E-value=1.4e+02 Score=25.36 Aligned_cols=76 Identities=12% Similarity=-0.022 Sum_probs=45.5
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP----- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~----- 252 (280)
+.+++|=.|++.| ++..+++.+ .+++++.++.++...+.. +.+... ..++.++.+|+.+.. +.
T Consensus 6 ~~~~ilItGasgg-iG~~la~~l~~~G~~v~~~~r~~~~~~~~-~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 6 KDKVVIVTGGASG-IGAAISLRLAEEGAIPVIFGRSAPDDEFA-EELRAL---QPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHcCCcEEEEcCChhhHHHH-HHHHhc---CCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 5667888886544 444443332 267888898887665332 333322 346888999986532 11
Q ss_pred CCceeeEEechhh
Q 048398 253 SKSFDVVSLSYVV 265 (280)
Q Consensus 253 ~~sfDlVi~~~vl 265 (280)
-+..|+|+.+...
T Consensus 81 ~~~id~vi~~ag~ 93 (258)
T PRK08628 81 FGRIDGLVNNAGV 93 (258)
T ss_pred cCCCCEEEECCcc
Confidence 1367988877653
No 483
>PRK09273 hypothetical protein; Provisional
Probab=40.38 E-value=47 Score=28.27 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=29.1
Q ss_pred CCcEEEECCCCChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHH
Q 048398 186 IRDILDIGCSVGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLK 228 (280)
Q Consensus 186 ~~~ILDiGcGtG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~ 228 (280)
....-=++||||.-....+.++|+.+- |+=.+|.....+++.
T Consensus 63 ~~d~GIliCGTGiG~siAANK~pGIra-alc~d~~sA~lar~h 104 (211)
T PRK09273 63 AVDFVVTGCGTGQGAMLALNSFPGVVC-GYCIDPTDAYLFAQI 104 (211)
T ss_pred CCCEEEEEcCcHHHHHHHHhcCCCeEE-EEeCCHHHHHHHHHh
Confidence 344555789999988888999998763 333456666666655
No 484
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=40.32 E-value=84 Score=27.73 Aligned_cols=78 Identities=13% Similarity=-0.001 Sum_probs=43.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-CC--CCceeeE
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-LP--SKSFDVV 259 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~sfDlV 259 (280)
+.++||=.|+ +|..+..+++.. .+.+|++++.++............. +...+++++.+|+.+.. +. -..+|.|
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALD-GAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhcc-CCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 4567877774 676666665543 2668888887654322222221111 12347899999987643 10 1247877
Q ss_pred Eechh
Q 048398 260 SLSYV 264 (280)
Q Consensus 260 i~~~v 264 (280)
+....
T Consensus 81 ih~A~ 85 (322)
T PLN02662 81 FHTAS 85 (322)
T ss_pred EEeCC
Confidence 75543
No 485
>PRK06114 short chain dehydrogenase; Provisional
Probab=40.17 E-value=1.6e+02 Score=24.98 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=46.9
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHH-HHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPY-FLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~-~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----- 251 (280)
+.+++|=.|++.| .+..+++.+ .+++|+.+|.++. .++...+.+... ..++.++.+|+.+.. +
T Consensus 7 ~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 7 DGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA---GRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 5678888886655 344444332 3679999998643 334444444332 346778888886532 0
Q ss_pred CCCceeeEEechhhh
Q 048398 252 PSKSFDVVSLSYVVC 266 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh 266 (280)
.-++.|+++.+....
T Consensus 83 ~~g~id~li~~ag~~ 97 (254)
T PRK06114 83 ELGALTLAVNAAGIA 97 (254)
T ss_pred HcCCCCEEEECCCCC
Confidence 124579998877654
No 486
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.88 E-value=1.4e+02 Score=25.53 Aligned_cols=77 Identities=12% Similarity=-0.007 Sum_probs=45.6
Q ss_pred CCCcEEEECCCCC-hhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------C--
Q 048398 185 EIRDILDIGCSVG-VSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------L-- 251 (280)
Q Consensus 185 ~~~~ILDiGcGtG-~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~-- 251 (280)
+++++|=.|+++| ..+..+++.+ -+++|+.+|.++...+...+...+. ..+.++.+|+.+.. .
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL----DAPIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh----ccceEEecCcCCHHHHHHHHHHHHH
Confidence 5678999998752 4444444433 2688998998765433333322221 23456778876532 0
Q ss_pred CCCceeeEEechhh
Q 048398 252 PSKSFDVVSLSYVV 265 (280)
Q Consensus 252 ~~~sfDlVi~~~vl 265 (280)
.-+..|+++.+..+
T Consensus 85 ~~g~ld~lv~nAg~ 98 (258)
T PRK07533 85 EWGRLDFLLHSIAF 98 (258)
T ss_pred HcCCCCEEEEcCcc
Confidence 12568999988765
No 487
>PRK06940 short chain dehydrogenase; Provisional
Probab=39.82 E-value=1.8e+02 Score=25.25 Aligned_cols=74 Identities=15% Similarity=0.026 Sum_probs=46.3
Q ss_pred cEEEECCCCChhHHHHHhhC-CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C----CCCcee
Q 048398 188 DILDIGCSVGVSTKCLADKF-PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L----PSKSFD 257 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~-p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~sfD 257 (280)
.+|=-|+ |.++..+++.+ .+.+|+++|.++..++...+.+... ..++.++.+|+.+.. + ..+..|
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA---GFDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 4554554 34555555544 3678999999887666555554433 346788888986532 1 124689
Q ss_pred eEEechhhh
Q 048398 258 VVSLSYVVC 266 (280)
Q Consensus 258 lVi~~~vlh 266 (280)
+++.+..+.
T Consensus 79 ~li~nAG~~ 87 (275)
T PRK06940 79 GLVHTAGVS 87 (275)
T ss_pred EEEECCCcC
Confidence 999877653
No 488
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=39.77 E-value=2.3e+02 Score=23.88 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=23.2
Q ss_pred CCCcEEEECCC-CCh-hHHHHHhhCCCCeEEEEeCC
Q 048398 185 EIRDILDIGCS-VGV-STKCLADKFPSAKVTGLDLS 218 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~-~a~~l~~~~p~~~v~gvDis 218 (280)
+..+|+=+||| .|. .+..|++.+ -.+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~G-vg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSG-VGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 67789999998 454 444455543 3479999987
No 489
>PRK06953 short chain dehydrogenase; Provisional
Probab=39.27 E-value=1.5e+02 Score=24.44 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=40.5
Q ss_pred cEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------CCCCcee
Q 048398 188 DILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------LPSKSFD 257 (280)
Q Consensus 188 ~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~sfD 257 (280)
++|=.||+ |.++..+++.+ .+++|++++.++..++..+ .. .++++.+|+.+.. +...++|
T Consensus 3 ~vlvtG~s-g~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~----~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 3 TVLIVGAS-RGIGREFVRQYRADGWRVIATARDAAALAALQ----AL-----GAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred eEEEEcCC-CchhHHHHHHHHhCCCEEEEEECCHHHHHHHH----hc-----cceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 56666665 44444443322 3789999999876543221 12 2457788876532 2234689
Q ss_pred eEEechhhh
Q 048398 258 VVSLSYVVC 266 (280)
Q Consensus 258 lVi~~~vlh 266 (280)
+|+.+....
T Consensus 73 ~vi~~ag~~ 81 (222)
T PRK06953 73 AAVYVAGVY 81 (222)
T ss_pred EEEECCCcc
Confidence 999876543
No 490
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=39.03 E-value=1.2e+02 Score=30.11 Aligned_cols=80 Identities=11% Similarity=-0.074 Sum_probs=47.7
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcC----C--CCCCeEEEEeCCCCCC-C--CC
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGG----P--RKNPISWVHAIGEDSG-L--PS 253 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~----~--~~~~v~~~~~d~~~~~-~--~~ 253 (280)
++++||=.|+ +|.++..+++.+ .+.+|++++.++..+......+.... + ...++.++.+|+.+.. + .-
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 4566777775 455555544433 36799999998776654443332210 0 1236889999997642 1 11
Q ss_pred CceeeEEechhh
Q 048398 254 KSFDVVSLSYVV 265 (280)
Q Consensus 254 ~sfDlVi~~~vl 265 (280)
+..|+||++...
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 357998887544
No 491
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=39.00 E-value=65 Score=29.84 Aligned_cols=42 Identities=31% Similarity=0.294 Sum_probs=31.3
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHH
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQL 227 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~ 227 (280)
.+.+|+=+|+| .|..+...++.. +++|+.+|.++.-++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHH
Confidence 46679999998 666777767666 6799999999876554433
No 492
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=38.48 E-value=64 Score=26.46 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=26.4
Q ss_pred EEEECCCCCh--hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHh
Q 048398 189 ILDIGCSVGV--STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKK 231 (280)
Q Consensus 189 ILDiGcGtG~--~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~ 231 (280)
|.=||+|+=. ++..++.. +.+|+.+|.++..++.+++.+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHH
Confidence 4556776432 33333433 88999999999999998876543
No 493
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=38.41 E-value=1.6e+02 Score=26.24 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=47.8
Q ss_pred CCcEEEECCCCCh---hHHHHHhhCCC-CeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC--------C--
Q 048398 186 IRDILDIGCSVGV---STKCLADKFPS-AKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG--------L-- 251 (280)
Q Consensus 186 ~~~ILDiGcGtG~---~a~~l~~~~p~-~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~--------~-- 251 (280)
.+++|=.|++.|. .+..+++. + .+|+.++.++...+.+.+.+... ..++.++.+|+.+.. +
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~--G~~~V~l~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~ 77 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAAT--GEWHVIMACRDFLKAEQAAKSLGMP---KDSYTIMHLDLGSLDSVRQFVQQFRE 77 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhcCC---CCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4578888877665 33334444 6 78999988877665554444322 346778888886542 1
Q ss_pred CCCceeeEEechhhh
Q 048398 252 PSKSFDVVSLSYVVC 266 (280)
Q Consensus 252 ~~~sfDlVi~~~vlh 266 (280)
..+..|+++.+..+.
T Consensus 78 ~~~~iD~lI~nAG~~ 92 (314)
T TIGR01289 78 SGRPLDALVCNAAVY 92 (314)
T ss_pred hCCCCCEEEECCCcc
Confidence 124689999887653
No 494
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=38.22 E-value=68 Score=30.67 Aligned_cols=75 Identities=21% Similarity=0.108 Sum_probs=45.7
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
..++|+=+|-| +|..+..+.... +++|+..|..+.......... ....+.+..+.-.. +....+|+|+.+=
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~-G~~v~v~D~~~~~~~~~~~~~-----~~~~i~~~~g~~~~--~~~~~~d~vV~SP 77 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKL-GAEVTVSDDRPAPEGLAAQPL-----LLEGIEVELGSHDD--EDLAEFDLVVKSP 77 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHC-CCeEEEEcCCCCccchhhhhh-----hccCceeecCccch--hccccCCEEEECC
Confidence 46788888866 565544444443 799999999887722222211 13456666665444 2234589999876
Q ss_pred hhhh
Q 048398 264 VVCL 267 (280)
Q Consensus 264 vlh~ 267 (280)
.+..
T Consensus 78 Gi~~ 81 (448)
T COG0771 78 GIPP 81 (448)
T ss_pred CCCC
Confidence 5543
No 495
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.91 E-value=1.8e+02 Score=24.20 Aligned_cols=77 Identities=14% Similarity=0.016 Sum_probs=47.8
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEE-eCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC----
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGL-DLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP---- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gv-Disp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 252 (280)
..++||=+|+ +|..+..+++.+ .+++++.+ +.++..++.....+... ..++.++.+|+.+.. +.
T Consensus 4 ~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 4 MGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE---GGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3457777775 455455444432 26788888 88877666555554432 346889999987642 10
Q ss_pred -CCceeeEEechhh
Q 048398 253 -SKSFDVVSLSYVV 265 (280)
Q Consensus 253 -~~sfDlVi~~~vl 265 (280)
-+.+|+|+.+...
T Consensus 80 ~~~~id~vi~~ag~ 93 (247)
T PRK05565 80 KFGKIDILVNNAGI 93 (247)
T ss_pred HhCCCCEEEECCCc
Confidence 1258999876654
No 496
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=37.81 E-value=82 Score=29.91 Aligned_cols=70 Identities=26% Similarity=0.251 Sum_probs=40.8
Q ss_pred CCCcEEEECCC-CChh--HHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEe
Q 048398 185 EIRDILDIGCS-VGVS--TKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSL 261 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~--a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~ 261 (280)
+.++|+=+|-| +|.. +..|.+. +.+|++.|..+.. ... .+.+. .+.+..+.-.. .+ ..+|+|+.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~~~--~~~-~l~~~-----gi~~~~~~~~~-~~--~~~d~vv~ 72 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKESA--VTQ-RLLEL-----GAIIFIGHDAE-NI--KDADVVVY 72 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCCCh--HHH-HHHHC-----CCEEeCCCCHH-HC--CCCCEEEE
Confidence 45678888854 7877 3445555 8899999987542 112 23332 34444322111 12 24899998
Q ss_pred chhhhh
Q 048398 262 SYVVCL 267 (280)
Q Consensus 262 ~~vlh~ 267 (280)
+-.+..
T Consensus 73 spgi~~ 78 (461)
T PRK00421 73 SSAIPD 78 (461)
T ss_pred CCCCCC
Confidence 876653
No 497
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.64 E-value=1e+02 Score=29.64 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=40.2
Q ss_pred CCCcEEEECCC-CChhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCceeeEEech
Q 048398 185 EIRDILDIGCS-VGVSTKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSGLPSKSFDVVSLSY 263 (280)
Q Consensus 185 ~~~~ILDiGcG-tG~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~~~~~sfDlVi~~~ 263 (280)
..++|+=+|.| +|..+..++... +++|+++|..+..++. +.+. .+.+..+.-....+ ..+|+|+.+-
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~-G~~v~~~D~~~~~~~~----l~~~-----g~~~~~~~~~~~~l--~~~D~VV~Sp 78 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRF-GARPTVCDDDPDALRP----HAER-----GVATVSTSDAVQQI--ADYALVVTSP 78 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHH----HHhC-----CCEEEcCcchHhHh--hcCCEEEECC
Confidence 56789999988 444444444433 7899999987654332 2222 23444332211112 2479998877
Q ss_pred hhh
Q 048398 264 VVC 266 (280)
Q Consensus 264 vlh 266 (280)
.+.
T Consensus 79 Gi~ 81 (488)
T PRK03369 79 GFR 81 (488)
T ss_pred CCC
Confidence 664
No 498
>PRK06841 short chain dehydrogenase; Provisional
Probab=37.61 E-value=1.8e+02 Score=24.41 Aligned_cols=74 Identities=22% Similarity=0.085 Sum_probs=45.4
Q ss_pred CCCcEEEECCCCCh---hHHHHHhhCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----CC----
Q 048398 185 EIRDILDIGCSVGV---STKCLADKFPSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----LP---- 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~---~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~~---- 252 (280)
+.++||=.|++.|. ++..+++. +++|++++.++...+.+.+. . ..++.++.+|+.+.. +.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~--G~~Vi~~~r~~~~~~~~~~~---~---~~~~~~~~~Dl~~~~~~~~~~~~~~~ 85 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAK--GARVALLDRSEDVAEVAAQL---L---GGNAKGLVCDVSDSQSVEAAVAAVIS 85 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHh---h---CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56788988876654 33334444 68999999987643333221 1 235678888886532 10
Q ss_pred -CCceeeEEechhhh
Q 048398 253 -SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 -~~sfDlVi~~~vlh 266 (280)
-+++|+|+.+....
T Consensus 86 ~~~~~d~vi~~ag~~ 100 (255)
T PRK06841 86 AFGRIDILVNSAGVA 100 (255)
T ss_pred HhCCCCEEEECCCCC
Confidence 13579888776553
No 499
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=37.47 E-value=1.5e+02 Score=29.86 Aligned_cols=80 Identities=14% Similarity=0.021 Sum_probs=49.4
Q ss_pred CCCcEEEECCCCChhHHHHHhhC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCCC-----C-----C
Q 048398 185 EIRDILDIGCSVGVSTKCLADKF--PSAKVTGLDLSPYFLAVAQLKEKKGGPRKNPISWVHAIGEDSG-----L-----P 252 (280)
Q Consensus 185 ~~~~ILDiGcGtG~~a~~l~~~~--p~~~v~gvDisp~~l~~A~~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 252 (280)
..++||=.|++.|. +..+++.+ .+++|+++|.++..++.....+... ....++.++.+|+.+.. + .
T Consensus 413 ~gkvvLVTGasggI-G~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~-~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 413 ARRVAFVTGGAGGI-GRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQ-FGAGRAVALKMDVTDEQAVKAAFADVALA 490 (676)
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhh-cCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 45778888876554 33333332 2789999999987766655554432 12235778888886532 1 1
Q ss_pred CCceeeEEechhhh
Q 048398 253 SKSFDVVSLSYVVC 266 (280)
Q Consensus 253 ~~sfDlVi~~~vlh 266 (280)
-+..|+|+.+..+.
T Consensus 491 ~g~iDilV~nAG~~ 504 (676)
T TIGR02632 491 YGGVDIVVNNAGIA 504 (676)
T ss_pred cCCCcEEEECCCCC
Confidence 13589988777653
No 500
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=37.42 E-value=78 Score=27.95 Aligned_cols=41 Identities=27% Similarity=0.177 Sum_probs=28.9
Q ss_pred CcEEEECCCC-C-hhHHHHHhhCCCCeEEEEeCCHHHHHHHHHHH
Q 048398 187 RDILDIGCSV-G-VSTKCLADKFPSAKVTGLDLSPYFLAVAQLKE 229 (280)
Q Consensus 187 ~~ILDiGcGt-G-~~a~~l~~~~p~~~v~gvDisp~~l~~A~~~~ 229 (280)
++|.=||||. | .++..++.. +.+|+++|.++..++.+++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i 46 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELI 46 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHH
Confidence 4677888883 3 244444444 679999999999998776543
Done!