Query 048399
Match_columns 109
No_of_seqs 114 out of 659
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02990 Probable pectinestera 99.9 1.8E-26 3.9E-31 187.1 11.0 98 3-105 114-211 (572)
2 PLN02313 Pectinesterase/pectin 99.9 1.9E-26 4.1E-31 187.5 11.0 100 3-105 121-221 (587)
3 PLN02713 Probable pectinestera 99.9 3.6E-26 7.9E-31 185.1 10.7 96 4-102 93-188 (566)
4 PLN02217 probable pectinestera 99.9 6.5E-26 1.4E-30 185.9 10.8 98 3-105 112-209 (670)
5 PLN02484 probable pectinestera 99.9 8.2E-26 1.8E-30 183.7 10.8 96 3-105 133-228 (587)
6 PLN02314 pectinesterase 99.9 1.4E-25 3.1E-30 182.4 11.1 100 3-105 130-235 (586)
7 PLN02745 Putative pectinestera 99.9 1.4E-25 3.1E-30 182.5 10.6 96 2-105 138-233 (596)
8 PLN02468 putative pectinestera 99.9 1.8E-25 3.8E-30 181.2 10.5 93 3-105 126-218 (565)
9 PLN03043 Probable pectinestera 99.9 2.3E-25 4.9E-30 179.7 10.5 94 3-102 63-156 (538)
10 PLN02197 pectinesterase 99.9 3E-25 6.4E-30 180.2 10.4 95 3-105 98-192 (588)
11 PLN02933 Probable pectinestera 99.9 1.2E-24 2.5E-29 174.9 10.8 95 3-105 83-183 (530)
12 PLN02506 putative pectinestera 99.9 3.2E-24 7E-29 172.9 10.7 99 3-105 95-193 (537)
13 PLN02698 Probable pectinestera 99.9 4.7E-24 1E-28 170.8 10.5 94 5-105 83-178 (497)
14 PLN02416 probable pectinestera 99.9 6.6E-24 1.4E-28 171.3 10.2 94 3-105 100-193 (541)
15 PLN02201 probable pectinestera 99.9 6.6E-24 1.4E-28 170.5 10.1 96 4-104 67-164 (520)
16 PLN02995 Probable pectinestera 99.9 6.2E-24 1.3E-28 171.4 10.0 97 4-105 96-192 (539)
17 PLN02301 pectinesterase/pectin 99.9 1.5E-23 3.2E-28 169.4 10.4 91 3-105 112-202 (548)
18 PLN02708 Probable pectinestera 99.9 1.2E-23 2.6E-28 170.2 9.8 86 8-104 111-196 (553)
19 PLN02170 probable pectinestera 99.9 5.8E-23 1.3E-27 165.0 9.8 88 9-105 99-186 (529)
20 smart00856 PMEI Plant invertas 99.9 1.3E-22 2.8E-27 138.0 10.1 85 3-99 64-148 (148)
21 PLN02916 pectinesterase family 99.9 1.2E-21 2.7E-26 156.7 9.3 82 8-105 61-142 (502)
22 PLN02488 probable pectinestera 99.9 2.6E-21 5.7E-26 154.6 9.3 92 5-104 65-160 (509)
23 TIGR01614 PME_inhib pectineste 99.8 1.2E-20 2.7E-25 132.2 9.8 87 5-103 91-177 (178)
24 PF04043 PMEI: Plant invertase 99.8 4.8E-19 1E-23 120.4 10.7 87 3-99 66-152 (152)
25 PF02953 zf-Tim10_DDP: Tim10/D 83.5 4 8.7E-05 23.9 4.7 30 3-32 36-65 (66)
26 KOG1733 Mitochondrial import i 66.2 14 0.0003 23.8 3.9 29 3-31 57-85 (97)
27 COG2205 KdpD Osmosensitive K+ 60.1 47 0.001 29.4 7.1 98 4-101 619-723 (890)
28 PF08287 DASH_Spc19: Spc19; I 41.0 87 0.0019 21.7 5.0 22 12-33 2-23 (153)
29 KOG4841 Dolichol-phosphate man 38.0 33 0.00071 21.9 2.2 25 10-34 65-89 (95)
30 PF03487 IL13: Interleukin-13; 34.7 50 0.0011 18.0 2.3 17 53-71 3-19 (43)
31 PF10360 DUF2433: Protein of u 32.2 46 0.001 22.7 2.4 50 48-106 14-66 (132)
32 PF12631 GTPase_Cys_C: Catalyt 32.1 1.1E+02 0.0024 18.1 3.8 23 5-27 11-33 (73)
33 PF08499 PDEase_I_N: 3'5'-cycl 30.8 88 0.0019 18.4 3.1 17 47-63 17-33 (59)
34 KOG3470 Beta-tubulin folding c 29.0 1.3E+02 0.0028 19.8 3.9 28 7-34 51-78 (107)
35 PF07647 SAM_2: SAM domain (St 27.4 63 0.0014 18.2 2.1 30 45-76 3-32 (66)
36 PRK11376 hlyE hemolysin E; Pro 27.2 1.2E+02 0.0025 22.9 3.9 22 45-66 59-80 (303)
37 PRK09634 nusB transcription an 27.0 2E+02 0.0044 21.0 5.1 54 13-71 43-96 (207)
38 PF02970 TBCA: Tubulin binding 25.2 1.8E+02 0.0039 18.1 4.7 26 8-33 46-71 (90)
39 PRK14740 kdbF potassium-transp 24.6 61 0.0013 16.3 1.4 10 51-60 3-12 (29)
40 PF08285 DPM3: Dolichol-phosph 23.9 69 0.0015 20.3 2.0 25 10-34 61-85 (91)
41 PF10157 DUF2365: Uncharacteri 23.9 1.1E+02 0.0025 21.1 3.2 21 11-31 85-105 (149)
42 PF11536 DUF3226: Protein of u 22.4 99 0.0022 23.2 2.8 25 47-71 184-208 (239)
43 COG3941 Mu-like prophage prote 22.1 2.5E+02 0.0054 24.0 5.3 67 2-70 229-297 (633)
44 PF00512 HisKA: His Kinase A ( 21.5 1.6E+02 0.0035 16.3 4.5 51 47-100 9-63 (68)
45 PF10516 SHNi-TPR: SHNi-TPR; 21.2 86 0.0019 16.5 1.7 18 16-33 14-31 (38)
46 COG5665 NOT5 CCR4-NOT transcri 20.4 1.7E+02 0.0037 23.9 3.9 53 47-107 47-107 (548)
No 1
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=1.8e-26 Score=187.09 Aligned_cols=98 Identities=20% Similarity=0.413 Sum_probs=85.0
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
+++|+++.||+||+|+|++++++|++++..| +..+...+...++|++||||||||||+||+|||.+.+ +++++.|
T Consensus 114 ~~~~r~k~Al~DC~ELlddAvdeL~~Sl~~l---~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~e~~--s~lk~~~ 188 (572)
T PLN02990 114 ANDPETKGALELCEKLMNDATDDLKKCLDNF---DGFSIDQIEDFVEDLRVWLSGSIAYQQTCMDTFEEIK--SNLSQDM 188 (572)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccccccchhHHHHHHHHHHhccHhhHHHhhhccc--hhHHHHH
Confidence 6899999999999999999999999999999 4322223345679999999999999999999998643 4689999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh
Q 048399 83 TAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
...+.++.+|+||||||++.+..
T Consensus 189 ~~~l~nv~~LtSNALAiv~~~~~ 211 (572)
T PLN02990 189 LKIFKTSRELTSNGLAMITNISN 211 (572)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999998664
No 2
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=99.94 E-value=1.9e-26 Score=187.45 Aligned_cols=100 Identities=31% Similarity=0.580 Sum_probs=85.7
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc-cchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKS-RDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDS 81 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~-~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~ 81 (109)
+++++++.||+||+|+|++++++|++++..| +..+. ..+.++.+|++||||||||||+||+|||++.+.++.+++.
T Consensus 121 ~l~~r~k~AL~DClELlddavD~L~~Sl~~l---~~~~~~~~~~~~~dDlqTWLSAALTnq~TClDGF~~~~~~~~vk~~ 197 (587)
T PLN02313 121 GLTPREVTALHDCLETIDETLDELHVAVEDL---HQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKA 197 (587)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccccccccchhHHHHHHHHHhcchhhHHHhhhccCccchhHHH
Confidence 5789999999999999999999999999999 43221 2334568999999999999999999999865444568889
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhh
Q 048399 82 VTAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 82 ~~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
|...+.++.+|+||||||++.+..
T Consensus 198 m~~~l~n~teLtSNALAIv~~~~~ 221 (587)
T PLN02313 198 LLKGQVHVEHMCSNALAMIKNMTE 221 (587)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999998664
No 3
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=3.6e-26 Score=185.14 Aligned_cols=96 Identities=29% Similarity=0.369 Sum_probs=83.8
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHHH
Q 048399 4 LKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVT 83 (109)
Q Consensus 4 ~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~~ 83 (109)
++++++.||+||+|+|++++++|++++.+| +..+...+.+..+|++||||||||||+||+|||.+.+.+++++..|.
T Consensus 93 ~~~r~k~AL~DC~ELlddavD~L~~Sl~~l---~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~~k~~v~ 169 (566)
T PLN02713 93 LSKSAIRALEDCQFLAGLNIDFLLSSFETV---NSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAWSVRNGLA 169 (566)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccccccccchhhHHHHHHHhhcchhhhhhhhhccccchhHHHHHH
Confidence 489999999999999999999999999999 43222234567899999999999999999999987655556788899
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 048399 84 AQVANVVQVTSNALGLFNQ 102 (109)
Q Consensus 84 ~~~~~~~~l~SnaLai~~~ 102 (109)
..+.++.+|+||+|||++.
T Consensus 170 ~~l~nvt~LtSNaLAlv~~ 188 (566)
T PLN02713 170 VPLSNDTKLYSVSLALFTK 188 (566)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999986
No 4
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=6.5e-26 Score=185.86 Aligned_cols=98 Identities=29% Similarity=0.570 Sum_probs=83.9
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
.++++++.||+||+|+|++++++|++++..| +..+...+....+|++||||||||||+||+|||.+.+ +.++..|
T Consensus 112 ~~~~r~k~AL~DClELlddAvDeL~~Sl~~L---~~~~~~~~~~~~dDvqTWLSAALTnQdTClDGF~~~~--~~vk~~m 186 (670)
T PLN02217 112 QKDPRTKMALDQCKELMDYAIGELSKSFEEL---GKFEFHKVDEALIKLRIWLSATISHEQTCLDGFQGTQ--GNAGETI 186 (670)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccccccccchhHHHHHHHHHHhchhHHHHhhhhhc--hHHHHHH
Confidence 4689999999999999999999999999999 4322223345679999999999999999999998543 4688899
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh
Q 048399 83 TAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
...+.++.+|+||+|||++.+..
T Consensus 187 ~~~l~nvseLtSNALAmv~~lss 209 (670)
T PLN02217 187 KKALKTAVQLTHNGLAMVSEMSN 209 (670)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999997654
No 5
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=8.2e-26 Score=183.69 Aligned_cols=96 Identities=35% Similarity=0.584 Sum_probs=84.0
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
+++|+++.||+||+|+|++++++|++++..| +... . .+.++|++||||||||||+||+|||++.+ +++++++|
T Consensus 133 ~~~~r~k~AL~DClELlddAid~L~~Sl~~l---~~~~--~-~~~~~DvkTWLSAALTnq~TClDGF~e~~-~~~vk~~m 205 (587)
T PLN02484 133 QMPPRVRSAYDSCLELLDDSVDALSRALSSV---VPSS--G-GGSPQDVVTWLSAALTNHDTCTEGFDGVN-GGEVKDQM 205 (587)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccc--c-ccchHHHHhHHHHHhccHhhHHHHhhccc-ccchHHHH
Confidence 5789999999999999999999999999999 4321 1 34679999999999999999999998642 23589999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh
Q 048399 83 TAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
...+.++.+|+||||||++.+..
T Consensus 206 ~~~l~~l~~LtSNALAIi~~~~~ 228 (587)
T PLN02484 206 TGALKDLSELVSNCLAIFSASNG 228 (587)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999998765
No 6
>PLN02314 pectinesterase
Probab=99.93 E-value=1.4e-25 Score=182.41 Aligned_cols=100 Identities=26% Similarity=0.473 Sum_probs=85.4
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccc--hhhchhhHHHHHHHHhhchhhhHhhhcCCCC----Ch
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRD--FLFHINNVQTWASTALTNGNTCLDGFADKSM----NG 76 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~--~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~----~~ 76 (109)
.++++++.||+||+|+|++|+++|++++..| +..+... ..+.++|++||||||||||+||+|||.+.+. ++
T Consensus 130 ~~~~~~k~AL~DC~EllddAid~L~~Sl~~l---~~~~~~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~~~~k~~~s 206 (586)
T PLN02314 130 TNDERLKSALRVCETLFDDAIDRLNDSISSM---QVGEGEKILSSSKIDDLKTWLSATITDQETCIDALQELSQNKYANS 206 (586)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccccccccccHHHHHhHHHHHhcCHhHHHHhhhccccccccch
Confidence 4789999999999999999999999999999 4322211 2567899999999999999999999986533 35
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhchhh
Q 048399 77 KVKDSVTAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 77 ~~~~~~~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
+++..|...+.++.+|+||+|||++.+..
T Consensus 207 ~vk~~~~~~l~n~~eLtSNaLAIi~~l~~ 235 (586)
T PLN02314 207 TLTNEVKTAMSNSTEFTSNSLAIVSKILG 235 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 68889999999999999999999998664
No 7
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=1.4e-25 Score=182.48 Aligned_cols=96 Identities=25% Similarity=0.517 Sum_probs=84.5
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHH
Q 048399 2 KNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDS 81 (109)
Q Consensus 2 ~~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~ 81 (109)
+..+|+.+.||+||+|+|++++++|++++.+| +. +...+.+.++|++||||||||||+||+|||.+. ++++.
T Consensus 138 ~~~~~r~k~Al~DC~ELlddAid~L~~Sl~~l---~~-~~~~~~~~~~Dv~TWLSAALT~q~TClDGF~e~----~l~s~ 209 (596)
T PLN02745 138 KFENPDEKDAIEDCKLLVEDAKEELKASISRI---ND-EVNKLAKNVPDLNNWLSAVMSYQETCIDGFPEG----KLKSE 209 (596)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh-cccccccchHHHHHHHHHHhccHhHHHhhhccc----chHHH
Confidence 35789999999999999999999999999999 43 222345678999999999999999999999862 48889
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhh
Q 048399 82 VTAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 82 ~~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
|...+.++.+|+||||||++.++.
T Consensus 210 m~~~l~~~~eLtSNALAiv~~lss 233 (596)
T PLN02745 210 MEKTFKSSQELTSNSLAMVSSLTS 233 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999998765
No 8
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=99.93 E-value=1.8e-25 Score=181.21 Aligned_cols=93 Identities=29% Similarity=0.475 Sum_probs=81.4
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
+++++++.||+||+|+|++++++|++++..| +... . .+..+|++||||||||||+||+|||++. .+++.|
T Consensus 126 ~~d~~~k~AL~DC~ELlddaid~L~~Sl~~l---~~~~--~-~~~~dDl~TWLSAAlTnq~TClDGF~e~----~vk~~~ 195 (565)
T PLN02468 126 VKDNMTNAALNACQELLDLAIDNLNNSLTSS---GGVS--V-LDNVDDLRTWLSSAGTYQETCIDGLAEP----NLKSFG 195 (565)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccc--c-ccchHHHHHHHHHHhcchhhhhhhhccc----CchHHH
Confidence 4689999999999999999999999999999 4221 1 4567999999999999999999999863 478889
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh
Q 048399 83 TAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
...+.++.+|+||+|||++.+..
T Consensus 196 ~~~l~n~~eLtSNaLAIi~~l~~ 218 (565)
T PLN02468 196 ENHLKNSTELTSNSLAIITWIGK 218 (565)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999998543
No 9
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=99.92 E-value=2.3e-25 Score=179.74 Aligned_cols=94 Identities=28% Similarity=0.389 Sum_probs=81.4
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
+++++++.||+||+|+|++++|+|++++.+| +... .......+|++||||||||||+||+|||.+.+ +.++..|
T Consensus 63 ~~~~r~~~AL~DC~ELlddSvD~L~~Sl~~L---~~~~-~~~~~~~~DvqTWLSAALTnqdTClDGF~~~~--~~~k~~i 136 (538)
T PLN03043 63 KMTHEEIGALADCGELSELNVDYLETISSEL---KSAE-LMTDALVERVTSLLSGVVTNQQTCYDGLVDSK--SSFAAAL 136 (538)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccc-cccccchhhHHHhHHHhhcChhhhhchhhccc--hhHHHHH
Confidence 5789999999999999999999999999999 4321 11234579999999999999999999998643 4588889
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 048399 83 TAQVANVVQVTSNALGLFNQ 102 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~ 102 (109)
...+.++.+|+||+|||++.
T Consensus 137 ~~~l~nvt~LtSNaLAlv~~ 156 (538)
T PLN03043 137 GAPLGNLTRLYSVSLGLVSH 156 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999985
No 10
>PLN02197 pectinesterase
Probab=99.92 E-value=3e-25 Score=180.24 Aligned_cols=95 Identities=21% Similarity=0.453 Sum_probs=81.7
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
.++|+++.||+||+|+|++++|+|++++.++ +. .........+|++||||||||||+||+|||.+. .++..|
T Consensus 98 ~~~~r~k~Al~DC~eLl~davd~L~~Sl~~l---~~-~~~~~~~~~~DvqTWLSAALTnq~TClDGf~~~----~~k~~v 169 (588)
T PLN02197 98 SISPNNKAVLDYCKRVFMYALEDLSTIVEEM---GE-DLNQIGSKIDQLKQWLTGVYNYQTDCLDDIEED----DLRKTI 169 (588)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh-cccccccchhhHHHHHHHHHhChhhhhccccCc----chHHHH
Confidence 4689999999999999999999999999999 42 112233467999999999999999999999863 477788
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh
Q 048399 83 TAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
...+.++.+|+||||||++.++.
T Consensus 170 ~~~l~nv~~LtSNaLAiv~~ls~ 192 (588)
T PLN02197 170 GEGIANSKILTSNAIDIFHSVVS 192 (588)
T ss_pred HHHHHHHHHHHHHHHHHhhccch
Confidence 99999999999999999998654
No 11
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=99.92 E-value=1.2e-24 Score=174.91 Aligned_cols=95 Identities=28% Similarity=0.539 Sum_probs=82.6
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCC------CCh
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKS------MNG 76 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~------~~~ 76 (109)
+++|+++.||+||+|+|++++++|++++..| +.. ...++|++||||||||||+||+|||.+.+ .++
T Consensus 83 ~l~~r~~~Al~DC~El~~davd~L~~S~~~l---~~~-----~~~~~Dv~TWLSAALT~q~TC~DGF~~~~~~~~~~~~~ 154 (530)
T PLN02933 83 NLTHRERCAFEDCLGLLDDTISDLTTAISKL---RSS-----SPEFNDVSMLLSNAMTNQDTCLDGFSTSDNENNNDMTY 154 (530)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhc-----ccchhHHHHHHHHHhcchhhHhhhhhccCccccccchh
Confidence 5799999999999999999999999999999 431 12479999999999999999999998654 123
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhchhh
Q 048399 77 KVKDSVTAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 77 ~~~~~~~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
+++..|...+.++.+|+||||||++.++.
T Consensus 155 ~vk~~v~~~l~~v~~LtSNALAlv~~ls~ 183 (530)
T PLN02933 155 ELPENLKESILDISNHLSNSLAMLQNISG 183 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 57888999999999999999999997664
No 12
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=99.91 E-value=3.2e-24 Score=172.91 Aligned_cols=99 Identities=32% Similarity=0.539 Sum_probs=82.7
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
.++|+++.||+||+|+|++++++|++++.++...... .......+|++|||||||||++||+|||++.+ ++++..|
T Consensus 95 ~~~~r~~~Al~DC~EllddSvd~L~~Sl~el~~~~~~--~~~~~~~~Dv~TWLSAALT~q~TC~DGF~~~~--~~~k~~v 170 (537)
T PLN02506 95 SISYREQVAIEDCKELLDFSVSELAWSLLEMNKIRAG--HDNVAYEGNLKAWLSAALSNQDTCLEGFEGTD--RHLENFI 170 (537)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cccccchhhHHhHHHHHhccHhHHHHhhhhcc--hhHHHHH
Confidence 3689999999999999999999999999999422111 11122468999999999999999999998753 4688889
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh
Q 048399 83 TAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
...+.++.+|+||||||++.+..
T Consensus 171 ~~~l~nv~~LtSNALAiv~~l~~ 193 (537)
T PLN02506 171 KGSLKQVTQLISNVLAMYTQLHS 193 (537)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999997664
No 13
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=99.91 E-value=4.7e-24 Score=170.80 Aligned_cols=94 Identities=23% Similarity=0.364 Sum_probs=80.5
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCC--ChhhhHHH
Q 048399 5 KPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSM--NGKVKDSV 82 (109)
Q Consensus 5 ~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~--~~~~~~~~ 82 (109)
+++++.|++||+|+|++++++|++++..| +... .+.++|++||||||||||+||+|||.+... .+.+++.|
T Consensus 83 ~~r~~~Al~DC~Ell~dsvd~L~~Sl~~l---~~~~----~~~~~Dv~TWLSAALT~q~TClDGF~~~~~~~~~~v~~~i 155 (497)
T PLN02698 83 ATYTPSVSDSCERLMKMSLKRLRQSLLAL---KGSS----RKNKHDIQTWLSAALTFQQACKDSIVDSTGYSGTSAISQI 155 (497)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcc----ccchhHHHHHHHHhhcchhhHHHHHhhhcccccchHHHHH
Confidence 38889999999999999999999999999 4321 146899999999999999999999964221 23588899
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh
Q 048399 83 TAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
...+.++.+|+||||||++.+..
T Consensus 156 ~~~l~~~~~ltSNALAmv~~l~~ 178 (497)
T PLN02698 156 SQKMDHLSRLVSNSLALVNRITP 178 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999998765
No 14
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=99.90 E-value=6.6e-24 Score=171.33 Aligned_cols=94 Identities=29% Similarity=0.444 Sum_probs=82.2
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
+++|+++.||+||+|+|++|+++|++++.+| +..+ .+.++|++||||||||||+||+|||.+.+ +.+++.|
T Consensus 100 ~~~~~~k~AL~DC~El~~dAvD~L~~Sl~~L---~~~~----~~~~~DvqTWLSAALT~q~TC~DGF~~~~--~~~~~~i 170 (541)
T PLN02416 100 NIIEKQRGTIQDCKELHQITVSSLKRSVSRI---QAGD----SRKLADARAYLSAALTNKNTCLEGLDSAS--GPLKPKL 170 (541)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcc----ccchhhHHHHHHHHhcchhhHHhhhhhcC--cchhhHH
Confidence 4678999999999999999999999999999 4321 13689999999999999999999998653 4578889
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh
Q 048399 83 TAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
...+.++.+++||||||++.+..
T Consensus 171 ~~~~~~v~qltSNALAlv~~~~~ 193 (541)
T PLN02416 171 VNSFTSTYKHVSNSLSMLPKSRR 193 (541)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999998654
No 15
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=99.90 E-value=6.6e-24 Score=170.47 Aligned_cols=96 Identities=27% Similarity=0.418 Sum_probs=80.6
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcc--chhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHH
Q 048399 4 LKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSR--DFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDS 81 (109)
Q Consensus 4 ~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~--~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~ 81 (109)
.+++++.||+||+|++++++|+|++|+.+| +..... ......+|++||||||||||+||+|||.+.+ +.+++.
T Consensus 67 ~~~r~~~Al~DC~ELl~davD~L~~Sl~eL---~~~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~~~~--~~~k~~ 141 (520)
T PLN02201 67 GDSRLSNAISDCLDLLDFAAEELSWSISAS---QNPNGKDNSTGDVGSDLRTWLSAALSNQDTCIEGFDGTN--GIVKKL 141 (520)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccccccccccchhHHHHHHHhhhcchhhhhhhhhccc--cchhHH
Confidence 478999999999999999999999999999 322111 1134579999999999999999999998643 357778
Q ss_pred HHHHHHHHHHHHHHHHHHhhchh
Q 048399 82 VTAQVANVVQVTSNALGLFNQFA 104 (109)
Q Consensus 82 ~~~~~~~~~~l~SnaLai~~~l~ 104 (109)
+...+.++.+++||+|||++...
T Consensus 142 v~~~l~nvt~LtSNaLALv~~~~ 164 (520)
T PLN02201 142 VAGSLSQVGSTVRELLTMVHPPP 164 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 88999999999999999998743
No 16
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=99.90 E-value=6.2e-24 Score=171.41 Aligned_cols=97 Identities=26% Similarity=0.384 Sum_probs=75.9
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHHH
Q 048399 4 LKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVT 83 (109)
Q Consensus 4 ~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~~ 83 (109)
++++++.||+||+|+|+|++++|++++.+| +........+..+|++|||||||||++||+|||++.+..+.+++.+.
T Consensus 96 ~~~r~~~AL~DC~ELl~DAvD~L~~Sl~~l---~~~~~~~~~~~~~DvqTWLSAALT~q~TC~DGF~~~~~~~~v~~~v~ 172 (539)
T PLN02995 96 TDFKKQAVLADCIDLYGDTIMQLNRTLQGV---SPKAGAAKRCTDFDAQTWLSTALTNTETCRRGSSDLNVSDFITPIVS 172 (539)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccccccccchhhHHHHHHHHhcchhhhhhhhccccchhhhhhhhh
Confidence 688999999999999999999999999999 42211111235689999999999999999999987543322333232
Q ss_pred HHHHHHHHHHHHHHHHhhchhh
Q 048399 84 AQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 84 ~~~~~~~~l~SnaLai~~~l~~ 105 (109)
..++.+|+||||||++.+..
T Consensus 173 --~~~~~~ltSNaLAi~~~l~~ 192 (539)
T PLN02995 173 --NTKISHLISNCLAVNGALLT 192 (539)
T ss_pred --hhhHHHHHHHHHHHhhhhcc
Confidence 26799999999999998754
No 17
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=99.90 E-value=1.5e-23 Score=169.36 Aligned_cols=91 Identities=32% Similarity=0.550 Sum_probs=79.3
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
.++++.+.||+||+|+|++++++|++++.+| +... .+.++|++||||||||||+||+|||.+. .++.|
T Consensus 112 ~~~~~~~aAL~DC~ELl~davd~L~~Sl~~l---~~~~----~~~~~Dv~TWLSAALT~q~TC~DGF~~~-----~~~~~ 179 (548)
T PLN02301 112 INDPRDKAALADCVELMDLSKDRIKDSVEAL---GNVT----SKSHADAHTWLSSVLTNHVTCLDGINGP-----SRQSM 179 (548)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccc----ccchHHHHHHHHHHhcchhhHHhhhhhh-----hhhhH
Confidence 4789999999999999999999999999999 4221 1347999999999999999999999853 35678
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh
Q 048399 83 TAQVANVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~l~~ 105 (109)
...+.++.+|+||+|||++.+++
T Consensus 180 ~~~l~n~~qL~SNsLAiv~~l~~ 202 (548)
T PLN02301 180 KPGLKDLISRARTSLAILVSVSP 202 (548)
T ss_pred HHHHHHHHHHHHHHHHhhccccc
Confidence 89999999999999999998764
No 18
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=99.90 E-value=1.2e-23 Score=170.24 Aligned_cols=86 Identities=24% Similarity=0.453 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHHHHHHH
Q 048399 8 EYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTAQVA 87 (109)
Q Consensus 8 ~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~~~~~~ 87 (109)
.+.||+||+|+|++++++|++++..+ .. ..++|++||||||||||+||+|||.+.+..+.++..| ..+.
T Consensus 111 ~~~AL~DC~ELlddavd~L~~Sl~~L---~~-------~~~~DvqTWLSAALTnq~TClDGF~~~~~~~~v~~~~-~~L~ 179 (553)
T PLN02708 111 RTTAATNCLEVLSNSEHRISSTDIAL---PR-------GKIKDARAWMSAALLYQYDCWSALKYVNDTSQVNDTM-SFLD 179 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---hh-------cchHHHHHHHHHHhccHhHHHHHhhccCccchHHHHH-HHHH
Confidence 35899999999999999999999988 42 2689999999999999999999998653223466666 6889
Q ss_pred HHHHHHHHHHHHhhchh
Q 048399 88 NVVQVTSNALGLFNQFA 104 (109)
Q Consensus 88 ~~~~l~SnaLai~~~l~ 104 (109)
++.+|+||+|||++.++
T Consensus 180 nvs~LtSNSLAmv~~~~ 196 (553)
T PLN02708 180 SLIGLTSNALSMMASYD 196 (553)
T ss_pred HHHHHHHHHHHhhhccc
Confidence 99999999999999753
No 19
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=99.89 E-value=5.8e-23 Score=164.95 Aligned_cols=88 Identities=33% Similarity=0.482 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHHHHHHHH
Q 048399 9 YRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTAQVAN 88 (109)
Q Consensus 9 ~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~~~~~~~ 88 (109)
.+|++||+|+|++++++|++++... .. .+..+|++||||||||||+||+|||.+.+...+++..|...+.+
T Consensus 99 ~~Al~DC~ELlddavd~L~~S~~~~---~~------~~~~~DvqTWLSAALTnq~TClDGf~~~~~~~~~~~~~~~~l~n 169 (529)
T PLN02170 99 FDPVNDCLELLDDTLDMLSRIVVIK---HA------DHDEEDVHTWLSAALTNQETCEQSLQEKSSSYKHGLAMDFVARN 169 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh---cc------ccchhHHHHHHHHHHhchhhHhhhhhccCccchhHHHHHHHHHH
Confidence 5899999999999999999999554 22 24789999999999999999999998765444566678888999
Q ss_pred HHHHHHHHHHHhhchhh
Q 048399 89 VVQVTSNALGLFNQFAN 105 (109)
Q Consensus 89 ~~~l~SnaLai~~~l~~ 105 (109)
+.+|+||+|||++.+..
T Consensus 170 v~eLtSNALALv~~~~~ 186 (529)
T PLN02170 170 LTGLLTNSLDLFVSVKS 186 (529)
T ss_pred HHHHHHHHHHhhccccc
Confidence 99999999999998654
No 20
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor. This domain inhibits pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex PUBMED:8521860. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein PUBMED:8521860. It is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical PUBMED:10880981.
Probab=99.89 E-value=1.3e-22 Score=138.04 Aligned_cols=85 Identities=44% Similarity=0.727 Sum_probs=76.7
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
..+|+.+.||+||.++|++++++|++++..+ ..+ .++|+++|||+|+++++||+|||.+.. +.++++|
T Consensus 64 ~~~~~~~~al~~C~~~y~~a~~~L~~a~~~l---~~~-------~~~d~~~~lsaa~t~~~tC~d~f~~~~--~~~~~~l 131 (148)
T smart00856 64 TKDPRLKAALKDCLELYDDAVDSLEKALEEL---KSG-------DYDDVATWLSAALTDQDTCLDGFEEND--DKVKSPL 131 (148)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc-------chhHHHHHHHHHhcCcchHHhHhccCC--cchhHHH
Confidence 4689999999999999999999999999999 432 589999999999999999999998642 3578889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048399 83 TAQVANVVQVTSNALGL 99 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai 99 (109)
...+.++.+|+||+|+|
T Consensus 132 ~~~~~~~~~l~s~aLai 148 (148)
T smart00856 132 TKRNDNLEKLTSNALAI 148 (148)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999999986
No 21
>PLN02916 pectinesterase family protein
Probab=99.86 E-value=1.2e-21 Score=156.66 Aligned_cols=82 Identities=34% Similarity=0.508 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHHHHHHH
Q 048399 8 EYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTAQVA 87 (109)
Q Consensus 8 ~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~~~~~~ 87 (109)
-..|++||+|+|++++++|++++..+ ... ..+|++||||||||||+||+|||.+.+. .. ...+.
T Consensus 61 ~~~Al~DC~ELl~dSvd~L~~Sl~~~---~~~-------~~~DvqTWLSAALTnq~TClDGf~~~~~---~~---~~~v~ 124 (502)
T PLN02916 61 LGEALSDCEKLYDESEARLSKLLVSH---ENF-------TVEDARTWLSGVLANHHTCLDGLEQKGQ---GH---KPMAH 124 (502)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhh---ccC-------chHHHHHHHHHHHhCHhHHHHhhhhccc---cc---hHHHH
Confidence 45899999999999999999999887 432 4799999999999999999999986431 22 23467
Q ss_pred HHHHHHHHHHHHhhchhh
Q 048399 88 NVVQVTSNALGLFNQFAN 105 (109)
Q Consensus 88 ~~~~l~SnaLai~~~l~~ 105 (109)
++.+++||||||++.+..
T Consensus 125 nvt~ltSNaLAlv~~~~~ 142 (502)
T PLN02916 125 NVTFVLSEALALYKKSRG 142 (502)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 999999999999988653
No 22
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=99.85 E-value=2.6e-21 Score=154.57 Aligned_cols=92 Identities=27% Similarity=0.433 Sum_probs=78.3
Q ss_pred CHhHHHHHHHH----HHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhH
Q 048399 5 KPKEYRAIADC----LELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKD 80 (109)
Q Consensus 5 ~~~~~~al~dC----~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~ 80 (109)
+++++.|++|| +|||++++++|++++..+ ....... ....+|++||||||||||+||+|||.+ ++++.
T Consensus 65 ~~~~~~a~~dc~~~c~el~~~~~~~l~~s~~~~---~~~~~~~-~~~~~d~~twLSa~lt~q~TC~dg~~~----~~~~~ 136 (509)
T PLN02488 65 MENDMLGVKEDTNLFEEMMESAKDRMIRSVEEL---LGGESPN-LGSYENVHTWLSGVLTSYITCIDEIGE----GAYKR 136 (509)
T ss_pred chhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHh---hcccccc-cCcHHHHHHHHHHhHhchhhHhccccC----cchHH
Confidence 78999999999 999999999999999999 4321111 124589999999999999999999953 25788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchh
Q 048399 81 SVTAQVANVVQVTSNALGLFNQFA 104 (109)
Q Consensus 81 ~~~~~~~~~~~l~SnaLai~~~l~ 104 (109)
.|...+.++++++||+|||+..+.
T Consensus 137 ~~~~~l~~~~~~~sn~La~~~~~~ 160 (509)
T PLN02488 137 RVEPELEDLISRARVALAIFISIS 160 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Confidence 899999999999999999998765
No 23
>TIGR01614 PME_inhib pectinesterase inhibitor domain. This model describes a plant domain of about 200 amino acids, characterized by four conserved Cys residues, shown in a pectinesterase inhibitor from Kiwi to form two disulfide bonds: first to second and third to fourth. Roughly half the members of this family have the region described by this model followed immediately by a pectinesterase domain, pfam01095. This suggests that the pairing of the enzymatic domain and its inhibitor reflects a conserved regulatory mechanism for this enzyme family.
Probab=99.84 E-value=1.2e-20 Score=132.24 Aligned_cols=87 Identities=34% Similarity=0.630 Sum_probs=78.6
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHHHH
Q 048399 5 KPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTA 84 (109)
Q Consensus 5 ~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~~~ 84 (109)
+|..+.+|++|.++|+++++.|++++..+ +. +.++|+++|||+|+++++||.|||.+.+ ++.+++|..
T Consensus 91 ~~~~~~al~~C~~~y~~a~~~L~~a~~~l---~~-------~~~~d~~~~ls~a~~~~~tC~d~f~~~~--~~~~~~l~~ 158 (178)
T TIGR01614 91 DPRDKSALEDCVELYSDAVDALDKALASL---KS-------KDYSDAETWLSSALTDPSTCEDGFEELG--GIVKSPLTK 158 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-------cchhHHHHHHHHHHcccchHHHHhccCC--CCccchHHH
Confidence 78999999999999999999999999999 53 2689999999999999999999998653 246778999
Q ss_pred HHHHHHHHHHHHHHHhhch
Q 048399 85 QVANVVQVTSNALGLFNQF 103 (109)
Q Consensus 85 ~~~~~~~l~SnaLai~~~l 103 (109)
.+.++.+|++|+|+|++.+
T Consensus 159 ~~~~~~~l~s~alai~~~~ 177 (178)
T TIGR01614 159 RNNNVKKLSSITLAIIKML 177 (178)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999875
No 24
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues. This domain inhibits pectinesterase/pectin methylesterases (PMEs) and invertases through formation of a non-covalent 1:1 complex []. It has been implicated in the regulation of fruit development, carbohydrate metabolism and cell wall extension. It may also be involved in inhibiting microbial pathogen PMEs. It has been observed that it is often expressed as a large inactive preprotein []. This domain is also found at the N-termini of PMEs predicted from DNA sequences, suggesting that both PMEs and their inhibitors are expressed as a single polyprotein and subsequently processed. It has two disulphide bridges and is mainly alpha-helical in structure [].; GO: 0004857 enzyme inhibitor activity, 0030599 pectinesterase activity; PDB: 1X90_A 1X8Z_C 1X91_A 1XG2_B 1RJ4_D 2CJ4_B 2XQR_F 2CJ7_A 2CJ8_A 2CJ6_A ....
Probab=99.80 E-value=4.8e-19 Score=120.43 Aligned_cols=87 Identities=36% Similarity=0.608 Sum_probs=71.8
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
..+|..+.+|++|.++|++++++|++++..| + . ....+.|+++|||+|+++++||.|||.+.. ++.+++|
T Consensus 66 ~~~~~~~~~l~~C~~~y~~a~~~l~~a~~~l---~-~----~~~~~~~~~~~lsaa~~~~~tC~~~f~~~~--~~~~~~l 135 (152)
T PF04043_consen 66 SKDPNAKQALQDCQELYDDAVDSLQRALEAL---N-S----KNGDYDDARTWLSAALTNQDTCEDGFEEAG--SPVKSPL 135 (152)
T ss_dssp S-THHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHT-HHHHHHHHHHHHHHHHHHHHHC-TTS--SS--HHH
T ss_pred cCCHHhhHHHHHHHHHHHHHHHHHHHHHHhh---h-c----ccchhHHHHHHHHHHHHHHHHHHHHhcccC--CCccchH
Confidence 4589999999999999999999999999999 1 0 123689999999999999999999995221 3578889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048399 83 TAQVANVVQVTSNALGL 99 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai 99 (109)
.....++.+|+||+|+|
T Consensus 136 ~~~~~~~~~l~s~aLai 152 (152)
T PF04043_consen 136 VQRNDNVEKLSSNALAI 152 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999997
No 25
>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.
Probab=83.52 E-value=4 Score=23.87 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQE 32 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~ 32 (109)
.|++.+..++..|.+-|-++...+.+.+..
T Consensus 36 ~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~ 65 (66)
T PF02953_consen 36 SLSSKEESCIDNCVDKYIDTNQFVSKRFQQ 65 (66)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 589999999999999999999888776543
No 26
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.17 E-value=14 Score=23.77 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=25.7
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQ 31 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~ 31 (109)
.|++.++.|+.-|++-|-+|-.-+.++.-
T Consensus 57 sl~~~e~~Cis~CmdRyMdawniVSrty~ 85 (97)
T KOG1733|consen 57 SLDSSEKSCISRCMDRYMDAWNIVSRTYI 85 (97)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999888877764
No 27
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=60.14 E-value=47 Score=29.41 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=67.7
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc----cc-hhhchhhHHHHHHHHhhchhhhHhhhcCCCCC--h
Q 048399 4 LKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKS----RD-FLFHINNVQTWASTALTNGNTCLDGFADKSMN--G 76 (109)
Q Consensus 4 ~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~----~~-~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~--~ 76 (109)
++|+++..|..|......|+++..-+...-+..-.... .. +..-..|++|-|++.+-..+|=.+--...+.. .
T Consensus 619 l~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~a 698 (890)
T COG2205 619 LAPEQRRLLDAVLTQIALALERVTLAEEAEQARLAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRA 698 (890)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHH
Confidence 68999999999999999999987655443210000000 12 23456799999999999988877654433211 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 048399 77 KVKDSVTAQVANVVQVTSNALGLFN 101 (109)
Q Consensus 77 ~~~~~~~~~~~~~~~l~SnaLai~~ 101 (109)
++-..+.+....+..|+.|-|+|..
T Consensus 699 eLl~~I~ees~~L~rlV~NLLdmTR 723 (890)
T COG2205 699 ELLSSIREESERLTRLVTNLLDMTR 723 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2445567778889999999999964
No 28
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=41.03 E-value=87 Score=21.68 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048399 12 IADCLELMDDSVDRLSKSVQEM 33 (109)
Q Consensus 12 l~dC~el~~~a~~~L~~s~~~l 33 (109)
|++|+.-+..++..|+.++..|
T Consensus 2 L~~cV~SL~~S~~lL~~Si~~L 23 (153)
T PF08287_consen 2 LSNCVSSLRSSVQLLQSSIETL 23 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555
No 29
>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.00 E-value=33 Score=21.88 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 048399 10 RAIADCLELMDDSVDRLSKSVQEMK 34 (109)
Q Consensus 10 ~al~dC~el~~~a~~~L~~s~~~l~ 34 (109)
+-.+||-|-+-+-+.+++++-++++
T Consensus 65 ATfnDc~eA~veL~~~IkEAr~~L~ 89 (95)
T KOG4841|consen 65 ATFNDCEEAAVELQSQIKEARADLA 89 (95)
T ss_pred eccCCcHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999994
No 30
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=34.72 E-value=50 Score=17.99 Aligned_cols=17 Identities=35% Similarity=0.849 Sum_probs=0.0
Q ss_pred HHHHHHhhchhhhHhhhcC
Q 048399 53 TWASTALTNGNTCLDGFAD 71 (109)
Q Consensus 53 twLSAAlt~~~TC~Dgf~~ 71 (109)
-||.+++. -||..|+..
T Consensus 3 lwlt~via--ltClggLas 19 (43)
T PF03487_consen 3 LWLTVVIA--LTCLGGLAS 19 (43)
T ss_dssp -------------------
T ss_pred HHHHHHHH--HHHhcccCC
Confidence 37877775 589999974
No 31
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=32.20 E-value=46 Score=22.72 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHHHHHHHH---HHHHHHHHHHHhhchhhc
Q 048399 48 INNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVTAQVAN---VVQVTSNALGLFNQFANN 106 (109)
Q Consensus 48 ~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~~~~~~~---~~~l~SnaLai~~~l~~~ 106 (109)
.+.-+..|+++-. .|.+.. ..++.++...+.. .++|..+||.++.+++..
T Consensus 14 ~e~yR~Kl~~~k~-------~F~~vW--~~VK~~ve~~i~~~~~q~~LL~~AL~v~~kiP~~ 66 (132)
T PF10360_consen 14 FEHYRSKLSASKA-------SFGEVW--ETVKGQVEEAIDPNEAQRNLLENALSVFDKIPIS 66 (132)
T ss_pred HHHHHHHHHHHHH-------HHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCC
Confidence 4555566665543 333221 1234444433333 589999999999998754
No 32
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=32.07 E-value=1.1e+02 Score=18.11 Aligned_cols=23 Identities=17% Similarity=0.484 Sum_probs=18.9
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHH
Q 048399 5 KPKEYRAIADCLELMDDSVDRLS 27 (109)
Q Consensus 5 ~~~~~~al~dC~el~~~a~~~L~ 27 (109)
+.|.+.+|..|.+.+..++..++
T Consensus 11 ~~Rq~~~L~~a~~~l~~a~~~l~ 33 (73)
T PF12631_consen 11 NARQRQLLEQALEHLEDALEALE 33 (73)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999888888887765
No 33
>PF08499 PDEase_I_N: 3'5'-cyclic nucleotide phosphodiesterase N-terminal; InterPro: IPR013706 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This domain is found to the N terminus of the calcium/calmodulin-dependent 3'5'-cyclic nucleotide phosphodiesterase domain (IPR002073 from INTERPRO).; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity
Probab=30.82 E-value=88 Score=18.38 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHhhchh
Q 048399 47 HINNVQTWASTALTNGN 63 (109)
Q Consensus 47 ~~~d~~twLSAAlt~~~ 63 (109)
-.++++-||++.+|-+.
T Consensus 17 vp~eVr~WLasTFtrq~ 33 (59)
T PF08499_consen 17 VPDEVRDWLASTFTRQV 33 (59)
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 46789999999999888
No 34
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=29.02 E-value=1.3e+02 Score=19.82 Aligned_cols=28 Identities=21% Similarity=0.397 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048399 7 KEYRAIADCLELMDDSVDRLSKSVQEMK 34 (109)
Q Consensus 7 ~~~~al~dC~el~~~a~~~L~~s~~~l~ 34 (109)
.++..|..|..++-|+..+|+.+...|.
T Consensus 51 kQeeVl~et~~mlPD~~~RL~~a~~DLe 78 (107)
T KOG3470|consen 51 KQEEVLKETRMMLPDSQRRLRKAYEDLE 78 (107)
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 3567888899998888888888888873
No 35
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=27.37 E-value=63 Score=18.21 Aligned_cols=30 Identities=17% Similarity=0.457 Sum_probs=23.4
Q ss_pred hhchhhHHHHHHHHhhchhhhHhhhcCCCCCh
Q 048399 45 LFHINNVQTWASTALTNGNTCLDGFADKSMNG 76 (109)
Q Consensus 45 ~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~ 76 (109)
.|..+++..||.+. ....|.+.|.+.+.++
T Consensus 3 ~w~~~~v~~WL~~~--gl~~y~~~f~~~~i~g 32 (66)
T PF07647_consen 3 TWSPEDVAEWLKSL--GLEQYADNFRENGIDG 32 (66)
T ss_dssp GHCHHHHHHHHHHT--TCGGGHHHHHHTTCSH
T ss_pred CCCHHHHHHHHHHC--CcHHHHHHHHHcCCcH
Confidence 36789999999955 4489999998766554
No 36
>PRK11376 hlyE hemolysin E; Provisional
Probab=27.19 E-value=1.2e+02 Score=22.94 Aligned_cols=22 Identities=5% Similarity=-0.029 Sum_probs=17.5
Q ss_pred hhchhhHHHHHHHHhhchhhhH
Q 048399 45 LFHINNVQTWASTALTNGNTCL 66 (109)
Q Consensus 45 ~~~~~d~~twLSAAlt~~~TC~ 66 (109)
+...+++++.+|.|-....-|.
T Consensus 59 K~~Ld~IRsLnSdAr~kYqecV 80 (303)
T PRK11376 59 SVLVGDIKTLLMDSQDKYFEAT 80 (303)
T ss_pred HHhhhHHHHHHHHHHHHHHHhh
Confidence 3578999999999987766665
No 37
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=26.97 E-value=2e+02 Score=20.97 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcC
Q 048399 13 ADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFAD 71 (109)
Q Consensus 13 ~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~ 71 (109)
..|.|.++.+..+|+++-..| -.. .........+++.|..|++-.++-.+|...
T Consensus 43 ~~~~~~l~~~~~el~~~~~~l---~~s--~~~~~~~~~~r~~l~~~~~~~~~~~ng~s~ 96 (207)
T PRK09634 43 QEVRETLDTAAAELERAQQRL---LDS--EGDASDLESARTMLQEALTLAETAINRLSA 96 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---Hhh--hccccchHHHHHHHHHHHHHHHHHHccccH
Confidence 456666666667776666655 221 112346889999999999999999999864
No 38
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=25.25 E-value=1.8e+02 Score=18.14 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048399 8 EYRAIADCLELMDDSVDRLSKSVQEM 33 (109)
Q Consensus 8 ~~~al~dC~el~~~a~~~L~~s~~~l 33 (109)
+..+|..+..++-++...|..++..|
T Consensus 46 q~~vl~Et~~mipd~~~RL~~a~~~L 71 (90)
T PF02970_consen 46 QEEVLEETKMMIPDCQQRLEKAVEDL 71 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677777777777777777777666
No 39
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=24.61 E-value=61 Score=16.30 Aligned_cols=10 Identities=50% Similarity=0.757 Sum_probs=7.4
Q ss_pred HHHHHHHHhh
Q 048399 51 VQTWASTALT 60 (109)
Q Consensus 51 ~~twLSAAlt 60 (109)
...|||.|++
T Consensus 3 ~~~wls~a~a 12 (29)
T PRK14740 3 VLDWLSLALA 12 (29)
T ss_pred HHHHHHHHHH
Confidence 3578888876
No 40
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=23.90 E-value=69 Score=20.32 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 048399 10 RAIADCLELMDDSVDRLSKSVQEMK 34 (109)
Q Consensus 10 ~al~dC~el~~~a~~~L~~s~~~l~ 34 (109)
..++||-|-+..-..++++|-+.+.
T Consensus 61 ~tFnDcpeA~~eL~~eI~eAK~dLr 85 (91)
T PF08285_consen 61 ATFNDCPEAAKELQKEIKEAKADLR 85 (91)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999983
No 41
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=23.87 E-value=1.1e+02 Score=21.13 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048399 11 AIADCLELMDDSVDRLSKSVQ 31 (109)
Q Consensus 11 al~dC~el~~~a~~~L~~s~~ 31 (109)
.--+|.+.|.++++.+.+++.
T Consensus 85 ~Tv~~~~~y~~sv~~~cdsvD 105 (149)
T PF10157_consen 85 ITVEHMETYKDSVDKLCDSVD 105 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345788889999888888765
No 42
>PF11536 DUF3226: Protein of unknown function (DUF3226); InterPro: IPR024508 This family of proteins is functionally uncharacterised.; PDB: 2P62_B.
Probab=22.43 E-value=99 Score=23.19 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=20.6
Q ss_pred chhhHHHHHHHHhhchhhhHhhhcC
Q 048399 47 HINNVQTWASTALTNGNTCLDGFAD 71 (109)
Q Consensus 47 ~~~d~~twLSAAlt~~~TC~Dgf~~ 71 (109)
...|+.-.+++|-.|-..|+.||-+
T Consensus 184 kPKdvm~l~~~a~~~~G~~l~G~Ye 208 (239)
T PF11536_consen 184 KPKDVMHLLLIAYNYWGDSLSGFYE 208 (239)
T ss_dssp -HHHHHHHHHHHTT--SSBHHHHHH
T ss_pred CHHHHHHHHHHHhccCCchhhHHHH
Confidence 4679999999999999999999986
No 43
>COG3941 Mu-like prophage protein [General function prediction only]
Probab=22.15 E-value=2.5e+02 Score=24.04 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=44.9
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-cccCccchhhchhhHHHHHHHHhhchhhhHhhhc
Q 048399 2 KNLKPKEYRAIADCLELMDDSVDRLSKSVQEMKN-L-GRVKSRDFLFHINNVQTWASTALTNGNTCLDGFA 70 (109)
Q Consensus 2 ~~~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~-~-~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~ 70 (109)
+.|..+.+.|-.|=+..+.-.+..|++....+++ + ..+....+...+-|.-.||+++..... .|.|.
T Consensus 229 ~~l~~qa~gAaKd~MktW~G~va~lgd~w~~f~~~vm~sGaf~~Lk~~lrdf~~~lns~~~~g~--~~s~~ 297 (633)
T COG3941 229 AGLGIQAKGAAKDQMKTWLGLVANLGDDWDLFAERVMKSGAFDELKKRLRDFLSWLNSAKADGA--LDSLR 297 (633)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhccccch--HHHHH
Confidence 3445556677778888888888888888876643 1 122223556788999999999987443 44554
No 44
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=21.49 E-value=1.6e+02 Score=16.26 Aligned_cols=51 Identities=4% Similarity=-0.020 Sum_probs=31.9
Q ss_pred chhhHHHHHHHHhhchhhhHhhhcCCCCChh----hhHHHHHHHHHHHHHHHHHHHHh
Q 048399 47 HINNVQTWASTALTNGNTCLDGFADKSMNGK----VKDSVTAQVANVVQVTSNALGLF 100 (109)
Q Consensus 47 ~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~----~~~~~~~~~~~~~~l~SnaLai~ 100 (109)
-..|++|-|++...+-+.-.+ . ...+++ ....+......+.+++.+-|.+.
T Consensus 9 isHelr~PL~~i~~~~~~l~~-~--~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s 63 (68)
T PF00512_consen 9 ISHELRNPLTAIRGYLELLER-D--SDLDPEQLREYLDRIRSAADRLNELINDLLDFS 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-S--SCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH-c--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999988888777776 1 111122 23445666677777777766654
No 45
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=21.24 E-value=86 Score=16.49 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048399 16 LELMDDSVDRLSKSVQEM 33 (109)
Q Consensus 16 ~el~~~a~~~L~~s~~~l 33 (109)
.+.|+.|+.++++++.--
T Consensus 14 ~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 14 NENFEQAIEDYEKALEIQ 31 (38)
T ss_pred hccHHHHHHHHHHHHHHH
Confidence 367888899888888754
No 46
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=20.37 E-value=1.7e+02 Score=23.86 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=28.4
Q ss_pred chhhHHHHHHH--------HhhchhhhHhhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhhchhhcc
Q 048399 47 HINNVQTWAST--------ALTNGNTCLDGFADKSMNGKVKDSVTAQVANVVQVTSNALGLFNQFANNN 107 (109)
Q Consensus 47 ~~~d~~twLSA--------Alt~~~TC~Dgf~~~~~~~~~~~~~~~~~~~~~~l~SnaLai~~~l~~~~ 107 (109)
.-+.++||+|. -|+|----..|..+. +. ..+.....++.-.+|.+-..|.+++
T Consensus 47 ~rdqiktw~s~~dikdk~~l~~nrrlie~~me~f------k~--ve~~mk~k~fske~ls~~~~~dpke 107 (548)
T COG5665 47 HRDQIKTWLSKEDVKDKQVLMTNRRLIENGMERF------KS--VEKLMKTKQFSKEALTNPDIIDPKE 107 (548)
T ss_pred HHHHHHHhhcccccchHHHHHHhHHHHHhHHHHH------HH--HHHHHHHHHhhHhhccCcccCChhH
Confidence 46788999984 455544444444321 11 1223345556666666666555543
Done!