Query 048399
Match_columns 109
No_of_seqs 114 out of 659
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 15:52:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x91_A Invertase/pectin methyl 99.9 1.9E-25 6.5E-30 152.1 10.4 88 4-104 64-151 (153)
2 1xg2_B Pectinesterase inhibito 99.9 4.6E-25 1.6E-29 149.8 9.9 88 4-104 64-151 (153)
3 2cj4_A Invertase inhibitor; pr 99.9 3.5E-23 1.2E-27 140.6 8.2 84 4-103 65-149 (150)
4 3cjh_B Mitochondrial import in 70.6 10 0.00035 21.3 4.7 31 3-33 33-63 (64)
5 1r7c_A Genome polyprotein; mem 68.2 3.2 0.00011 20.6 1.8 13 47-59 15-27 (31)
6 2bsk_A Mitochondrial import in 64.6 19 0.00064 21.8 5.2 31 3-33 40-70 (89)
7 2bsk_B Mitochondrial import in 63.9 19 0.00066 21.7 5.2 31 3-33 42-72 (90)
8 3dxr_B Mitochondrial import in 63.2 15 0.00053 22.6 4.7 31 3-33 55-85 (95)
9 3dxr_A Mitochondrial import in 61.5 19 0.00067 21.7 4.9 31 3-33 49-79 (89)
10 3cjh_A Mitochondrial import in 44.4 20 0.0007 20.2 2.8 30 4-33 25-54 (64)
11 1di1_A Aristolochene synthase; 38.7 79 0.0027 22.1 5.8 54 8-64 242-298 (300)
12 3v1v_A 2-MIB synthase, 2-methy 33.0 1E+02 0.0035 23.7 6.0 55 9-65 369-424 (433)
13 2xz3_A Maltose ABC transporter 30.6 1.3E+02 0.0046 22.5 6.3 48 12-67 384-431 (463)
14 3bny_A Aristolochene synthase; 29.5 1.2E+02 0.0042 21.4 5.6 56 9-66 257-313 (320)
15 2rkl_A Vacuolar protein sortin 29.4 75 0.0026 17.4 4.9 30 4-33 2-31 (53)
16 3kb9_A EPI-isozizaene synthase 27.6 81 0.0028 23.4 4.5 59 8-66 290-358 (382)
17 3bq7_A Diacylglycerol kinase d 27.3 72 0.0025 18.3 3.4 31 44-76 8-38 (81)
18 2dhy_A CUE domain-containing p 24.7 50 0.0017 18.9 2.2 27 1-27 29-56 (67)
19 1ps1_A Pentalenene synthase; a 24.7 95 0.0033 22.2 4.3 59 8-66 248-313 (337)
20 3mq7_A Bone marrow stromal ant 24.5 49 0.0017 21.2 2.3 15 56-70 4-18 (121)
21 1pk1_B Sex COMB on midleg CG94 22.9 77 0.0026 18.9 2.9 35 43-77 14-48 (89)
22 3bs7_A Protein aveugle; sterIl 22.8 76 0.0026 17.9 2.9 32 45-76 5-36 (78)
23 1ji7_A ETS-related protein TEL 22.8 1.2E+02 0.0039 18.2 3.8 64 44-107 13-81 (89)
24 3u65_B TP33 protein; tetratric 21.1 2.4E+02 0.0081 20.3 7.9 68 1-71 237-309 (328)
No 1
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=99.93 E-value=1.9e-25 Score=152.09 Aligned_cols=88 Identities=19% Similarity=0.315 Sum_probs=79.8
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHHH
Q 048399 4 LKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVT 83 (109)
Q Consensus 4 ~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~~ 83 (109)
.+|+.+.||+||.++|++++++|++++..| ..+ .++|++||||+|+||++||+|||.+.+ +++++|.
T Consensus 64 ~~~~~~~al~dC~e~y~~a~~~L~~a~~~l---~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~ 130 (153)
T 1x91_A 64 VDPRSKLAYRSCVDEYESAIGNLEEAFEHL---ASG-------DGMGMNMKVSAALDGADTCLDDVKRLR---SVDSSVV 130 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTT-------CHHHHHHHHHHHHHHHHHHHHHHTTCS---SCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc-------CHHHHHHHHHHHHccHhHHHHHhccCC---CCcCHHH
Confidence 379999999999999999999999999999 532 589999999999999999999998753 4678899
Q ss_pred HHHHHHHHHHHHHHHHhhchh
Q 048399 84 AQVANVVQVTSNALGLFNQFA 104 (109)
Q Consensus 84 ~~~~~~~~l~SnaLai~~~l~ 104 (109)
..+.++.+|+||+|+|++.+.
T Consensus 131 ~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1x91_A 131 NNSKTIKNLCGIALVISNMLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999875
No 2
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=99.92 E-value=4.6e-25 Score=149.84 Aligned_cols=88 Identities=20% Similarity=0.300 Sum_probs=79.3
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHHH
Q 048399 4 LKPKEYRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSVT 83 (109)
Q Consensus 4 ~~~~~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~~ 83 (109)
.+|+.+.||+||.++|++++++|++++..| +.+ .++|++|||||||||++||+|||.+.+ +++++|.
T Consensus 64 ~~~~~~~al~dC~e~y~~a~~~L~~a~~~l---~~~-------~~~d~~t~lSaAlt~~~tC~dgf~~~~---~~~~~l~ 130 (153)
T 1xg2_B 64 TDPKLKGRYETCSENYADAIDSLGQAKQFL---TSG-------DYNSLNIYASAAFDGAGTCEDSFEGPP---NIPTQLH 130 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT-------CHHHHHHHHHHHHHHHHHHHHHCCSSS---CCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC-------CHHHHHHHHHHHhcccchHHHHhccCC---CCCcHHH
Confidence 479999999999999999999999999999 432 589999999999999999999998753 3667899
Q ss_pred HHHHHHHHHHHHHHHHhhchh
Q 048399 84 AQVANVVQVTSNALGLFNQFA 104 (109)
Q Consensus 84 ~~~~~~~~l~SnaLai~~~l~ 104 (109)
..+.++.+|+||+|+|++.+.
T Consensus 131 ~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 131 QADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999774
No 3
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=99.89 E-value=3.5e-23 Score=140.57 Aligned_cols=84 Identities=8% Similarity=0.109 Sum_probs=74.1
Q ss_pred CCHhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhhhHHH
Q 048399 4 LKPKEYRAIADCLELMDDSV-DRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFADKSMNGKVKDSV 82 (109)
Q Consensus 4 ~~~~~~~al~dC~el~~~a~-~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~~~~~ 82 (109)
-+|+.+.||+||.++|++++ ++|++++..+ +.+ .+.++++|||+|+|+++||+|||.+. +++|
T Consensus 65 ~~~~~~~al~dC~e~y~~a~~~~L~~a~~~l---~~~-------~~~~~~t~lsaAlt~~~tC~dgf~~~------~~pl 128 (150)
T 2cj4_A 65 PPAAWKGPLKNCAFSYKVILTASLPEAIEAL---TKG-------DPKFAEDGMVGSSGDAQECEEYFKGS------KSPF 128 (150)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHTHHHHHHHHH---HHS-------CHHHHHHHHHHHHHHHHHHHHTTTTS------CCTT
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC-------CHHHHHHHHHHHHHHHHHHHHhhCCC------CCcc
Confidence 36889999999999999999 7999999999 432 58899999999999999999999731 3347
Q ss_pred HHHHHHHHHHHHHHHHHhhch
Q 048399 83 TAQVANVVQVTSNALGLFNQF 103 (109)
Q Consensus 83 ~~~~~~~~~l~SnaLai~~~l 103 (109)
..++.++.+|+||+|+|++.+
T Consensus 129 ~~~~~~~~~l~s~aLaii~~l 149 (150)
T 2cj4_A 129 SALNIAVHELSDVGRAIVRNL 149 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 888999999999999999865
No 4
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=70.64 E-value=10 Score=21.35 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=26.6
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEM 33 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l 33 (109)
.|+..+..++.-|++-|-++-..+.+.+..+
T Consensus 33 ~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~ 63 (64)
T 3cjh_B 33 NLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63 (64)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999988887766543
No 5
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=68.23 E-value=3.2 Score=20.57 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=9.7
Q ss_pred chhhHHHHHHHHh
Q 048399 47 HINNVQTWASTAL 59 (109)
Q Consensus 47 ~~~d~~twLSAAl 59 (109)
...|.+|||+|-+
T Consensus 15 vLsDfktWlkaki 27 (31)
T 1r7c_A 15 VLSDFKTWLKAKL 27 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 3578888888865
No 6
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=64.57 E-value=19 Score=21.77 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=28.8
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEM 33 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l 33 (109)
.|+..+..|+.-|++-|-++-..+.+.+..+
T Consensus 40 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~ 70 (89)
T 2bsk_A 40 EVKPEETTCSEHCLQKYLKMTQRISMRFQEY 70 (89)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999988877
No 7
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=63.86 E-value=19 Score=21.66 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=28.5
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEM 33 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l 33 (109)
.|+..+..|+.-|++=|-++-..+.+.+..+
T Consensus 42 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~ 72 (90)
T 2bsk_B 42 ELSKGESVCLDRCVSKYLDIHERMGKKLTEL 72 (90)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999998888877
No 8
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=63.18 E-value=15 Score=22.56 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=28.5
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEM 33 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l 33 (109)
.|+..+..|+.-|++=|-++-..+.+.+..+
T Consensus 55 ~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~ 85 (95)
T 3dxr_B 55 ELNKNESSCLDRCVAKYFETNVQVGENMQKM 85 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999998888877
No 9
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=61.52 E-value=19 Score=21.66 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=28.7
Q ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048399 3 NLKPKEYRAIADCLELMDDSVDRLSKSVQEM 33 (109)
Q Consensus 3 ~~~~~~~~al~dC~el~~~a~~~L~~s~~~l 33 (109)
.|+..+..|+.-|++-|-++-..+.+.+..+
T Consensus 49 ~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~ 79 (89)
T 3dxr_A 49 KLTNKEQTCIMKCSEKFLKHSERVGQRFQEQ 79 (89)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999888877
No 10
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=44.39 E-value=20 Score=20.21 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048399 4 LKPKEYRAIADCLELMDDSVDRLSKSVQEM 33 (109)
Q Consensus 4 ~~~~~~~al~dC~el~~~a~~~L~~s~~~l 33 (109)
|+..+..++.-|++-|-++-..+.+.+..+
T Consensus 25 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~ 54 (64)
T 3cjh_A 25 YATRNDACIDQCLAKYMRSWNVISKAYISR 54 (64)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999998877765
No 11
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=38.66 E-value=79 Score=22.10 Aligned_cols=54 Identities=9% Similarity=-0.157 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC---ccchhhchhhHHHHHHHHhhchhh
Q 048399 8 EYRAIADCLELMDDSVDRLSKSVQEMKNLGRVK---SRDFLFHINNVQTWASTALTNGNT 64 (109)
Q Consensus 8 ~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~---~~~~~~~~~d~~twLSAAlt~~~T 64 (109)
...|++-+.++..++..++......+ .... ...+...+..++.|+++-+....+
T Consensus 242 ~eeA~~~~~~~i~~~~~~~~~~~~~l---~~~~~~~~~~l~~yv~~l~~~~~Gn~~Ws~~ 298 (300)
T 1di1_A 242 IPATKRVLWSMTREWETVHDEIVAEK---IASPDGCSEAAKAYMKGLEYQMSGNEQWSKT 298 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HSCTTCCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCccccHHHHHHHHHHHHHhhhhHHHhhc
Confidence 34788888899999988888877766 3221 123445688899999988776543
No 12
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=33.05 E-value=1e+02 Score=23.66 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhh-h
Q 048399 9 YRAIADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNT-C 65 (109)
Q Consensus 9 ~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~T-C 65 (109)
..|++-..++.++.+.+.....+.|... +....+...+..++.|+++-+....+ |
T Consensus 369 eeA~~~v~~~i~~~~~~F~~~~~~L~~~--~~~~~l~~Yv~gL~~~i~Gn~~Ws~~~t 424 (433)
T 3v1v_A 369 RDAYLKAVEVHNELQHSFEAAAADLAEA--CPLPPVLRFLRGVAAWVDGNHDWHRTNT 424 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHhhhhhhcCCC
Confidence 4577777778888777777777666221 11134455688999999999988876 5
No 13
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=30.58 E-value=1.3e+02 Score=22.47 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHh
Q 048399 12 IADCLELMDDSVDRLSKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLD 67 (109)
Q Consensus 12 l~dC~el~~~a~~~L~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~D 67 (109)
+.+=.+-...||..|++++..++.+. -+---..-||.+-.-+|.+|.-
T Consensus 384 ~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 431 (463)
T 2xz3_A 384 LEQDQQRLITAINQTHYNLLNVASVV--------AQNRRGLDWLYIRLGFQSLCPT 431 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhcchhhHHHHHhCcCccchh
Confidence 33334444444555555444443221 1223456789999999999984
No 14
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=29.51 E-value=1.2e+02 Score=21.38 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-ccchhhchhhHHHHHHHHhhchhhhH
Q 048399 9 YRAIADCLELMDDSVDRLSKSVQEMKNLGRVK-SRDFLFHINNVQTWASTALTNGNTCL 66 (109)
Q Consensus 9 ~~al~dC~el~~~a~~~L~~s~~~l~~~~~~~-~~~~~~~~~d~~twLSAAlt~~~TC~ 66 (109)
..|++-+.++......++.+....+. ..++ ...+...+..++.|+++-+....+|-
T Consensus 257 eeA~~~~~~~i~~~~~~~~~l~~~l~--~~~~~~~~l~~yv~~l~~~~~G~~~Ws~~t~ 313 (320)
T 3bny_A 257 EAAKRVLFVMCREWELRHQLLVARLS--AEGLETPGLAAYVEGLEYQMSGNELWSQTTL 313 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCCHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCHHHHHHHHHHHHHhhhhHHHhccCC
Confidence 36777777787777777776665441 1111 12334567889999999988876653
No 15
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=29.39 E-value=75 Score=17.44 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=17.1
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048399 4 LKPKEYRAIADCLELMDDSVDRLSKSVQEM 33 (109)
Q Consensus 4 ~~~~~~~al~dC~el~~~a~~~L~~s~~~l 33 (109)
++|.....+.+=.+.+.+|.-.-+.++.+|
T Consensus 2 ~t~~~~~~~~~~~~~i~~AqK~aK~AiSAL 31 (53)
T 2rkl_A 2 STKDELTKIMDRASKIEQIQKLAKYAISAL 31 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhcCCCHHHHHHHHHHHHHHHHHc
Confidence 445554555555555666666666666666
No 16
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=27.60 E-value=81 Score=23.41 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----------CccchhhchhhHHHHHHHHhhchhhhH
Q 048399 8 EYRAIADCLELMDDSVDRLSKSVQEMKNLGRV----------KSRDFLFHINNVQTWASTALTNGNTCL 66 (109)
Q Consensus 8 ~~~al~dC~el~~~a~~~L~~s~~~l~~~~~~----------~~~~~~~~~~d~~twLSAAlt~~~TC~ 66 (109)
...|++-..++.+++..++.+....|-..... ....+...+..++.|+++-+....+|.
T Consensus 290 ~eeA~~~v~~~i~~~~k~~~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~yv~~l~~~~~Gn~~Ws~~t~ 358 (382)
T 3kb9_A 290 LEEAIGEVRRRVEECITEFLAVERDALRFADELADGTVRGKELSGAVRANVGNMRNWFSSVYWFHHESG 358 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHHHHHhhhhhhhcccCC
Confidence 34788888888888888888777666221100 011334557889999999999998875
No 17
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=27.30 E-value=72 Score=18.28 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=21.5
Q ss_pred hhhchhhHHHHHHHHhhchhhhHhhhcCCCCCh
Q 048399 44 FLFHINNVQTWASTALTNGNTCLDGFADKSMNG 76 (109)
Q Consensus 44 ~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~ 76 (109)
..|..++|..||.+. .... ..+.|.+...++
T Consensus 8 ~~Ws~~~V~~WL~~l-gl~~-Y~~~F~~~~idg 38 (81)
T 3bq7_A 8 HLWGTEEVAAWLEHL-SLCE-YKDIFTRHDIRG 38 (81)
T ss_dssp GGCCHHHHHHHHHHT-TCGG-GHHHHHHTTCCH
T ss_pred hhCCHHHHHHHHHHC-CCHH-HHHHHHHcCCCH
Confidence 357899999999975 4333 667887654443
No 18
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.74 E-value=50 Score=18.90 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=19.8
Q ss_pred CCCCCHh-HHHHHHHHHHHHHHHHHHHH
Q 048399 1 FKNLKPK-EYRAIADCLELMDDSVDRLS 27 (109)
Q Consensus 1 ~~~~~~~-~~~al~dC~el~~~a~~~L~ 27 (109)
|-++++. .+.+|..|...++.|++.|-
T Consensus 29 FP~lD~~vI~~vL~a~~G~vd~aId~LL 56 (67)
T 2dhy_A 29 FPNMDYDIIECVLRANSGAVDATIDQLL 56 (67)
T ss_dssp CSSSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4456555 56788888888888888763
No 19
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=24.68 E-value=95 Score=22.17 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c--C---ccchhhc-hhhHHHHHHHHhhchhhhH
Q 048399 8 EYRAIADCLELMDDSVDRLSKSVQEMKNLGR-V--K---SRDFLFH-INNVQTWASTALTNGNTCL 66 (109)
Q Consensus 8 ~~~al~dC~el~~~a~~~L~~s~~~l~~~~~-~--~---~~~~~~~-~~d~~twLSAAlt~~~TC~ 66 (109)
...|++-..++.+++..++.+....+-+... . + ...+... +..++.|+++-+....+|.
T Consensus 248 ~eeA~~~v~~~i~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~v~~y~v~~l~~~~~G~~~W~~~s~ 313 (337)
T 1ps1_A 248 KSRSVSHMQNEVRARLEQYLLLESCLPKVGEIYQLDTAEREALERYRTDAVRTVIRGSYDWHRSSG 313 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCChhhHHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 3468888888888888888887766622111 0 0 1123345 7889999999999887653
No 20
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.54 E-value=49 Score=21.24 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=7.3
Q ss_pred HHHhhchhhhHhhhc
Q 048399 56 STALTNGNTCLDGFA 70 (109)
Q Consensus 56 SAAlt~~~TC~Dgf~ 70 (109)
.|+..|...|.|||.
T Consensus 4 favkANSeAC~dGLr 18 (121)
T 3mq7_A 4 SMDKANSEAARDGLR 18 (121)
T ss_dssp -------CHHHHHHH
T ss_pred hhhhhccHHHHHHHH
Confidence 467889999999995
No 21
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=22.88 E-value=77 Score=18.87 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=24.1
Q ss_pred chhhchhhHHHHHHHHhhchhhhHhhhcCCCCChh
Q 048399 43 DFLFHINNVQTWASTALTNGNTCLDGFADKSMNGK 77 (109)
Q Consensus 43 ~~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~ 77 (109)
...|.++||..||...---..-+.+-|.+...+|+
T Consensus 14 v~~WsvedV~~wl~~~~~g~~~y~~~F~~~eIDG~ 48 (89)
T 1pk1_B 14 PIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGK 48 (89)
T ss_dssp GGGCCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHH
T ss_pred chhCCHHHHHHHHHHHccchHHHHHHHHHcCcChH
Confidence 44789999999998874223346788876555543
No 22
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=22.84 E-value=76 Score=17.86 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=21.3
Q ss_pred hhchhhHHHHHHHHhhchhhhHhhhcCCCCCh
Q 048399 45 LFHINNVQTWASTALTNGNTCLDGFADKSMNG 76 (109)
Q Consensus 45 ~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~ 76 (109)
.|..++|-.||.+.-..-.-..+.|.+...++
T Consensus 5 ~Wt~~~V~~WL~~~~~gl~~y~~~F~~~~I~G 36 (78)
T 3bs7_A 5 LWTVSDVLKWYRRHCGEYTQYEQLFAQHDITG 36 (78)
T ss_dssp GCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCH
T ss_pred hCCHHHHHHHHHHHhcCHHHHHHHHHHCCCCH
Confidence 57899999999996222334567776554443
No 23
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=22.84 E-value=1.2e+02 Score=18.16 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=29.6
Q ss_pred hhhchhhHHHHHHHHhhchhhhHhhhcCCCCChhh-----hHHHHHHHHHHHHHHHHHHHHhhchhhcc
Q 048399 44 FLFHINNVQTWASTALTNGNTCLDGFADKSMNGKV-----KDSVTAQVANVVQVTSNALGLFNQFANNN 107 (109)
Q Consensus 44 ~~~~~~d~~twLSAAlt~~~TC~Dgf~~~~~~~~~-----~~~~~~~~~~~~~l~SnaLai~~~l~~~~ 107 (109)
..|..++|..||.=+.--..-+.-.|.....+|+. +..+..+.-....+.-+-|.+...-...+
T Consensus 13 ~~WS~~~V~~WL~w~~~ef~L~~~~~~~f~mdGk~Lc~Ls~edF~~~~p~~GdiL~~hL~~l~~~~~~~ 81 (89)
T 1ji7_A 13 IYWSRDDVAQWLKWAENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPHSGDELYELLQHILKQRDHH 81 (89)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCTTTHHHHHHHHHHHHHC----
T ss_pred hhCCHHHHHHHHHHHHHhcCCCCCchhcCCCCHHHHHcCCHHHHHhHcCCchHHHHHHHHHHHhCcccc
Confidence 46789999999998842222121112111233321 22333333333455555666666544443
No 24
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=21.08 E-value=2.4e+02 Score=20.33 Aligned_cols=68 Identities=4% Similarity=0.103 Sum_probs=41.3
Q ss_pred CCCCCHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhccccCccchhhchhhHHHHHHHHhhchhhhHhhhcC
Q 048399 1 FKNLKPKEYRAIADCLELMDDSVDRL-----SKSVQEMKNLGRVKSRDFLFHINNVQTWASTALTNGNTCLDGFAD 71 (109)
Q Consensus 1 ~~~~~~~~~~al~dC~el~~~a~~~L-----~~s~~~l~~~~~~~~~~~~~~~~d~~twLSAAlt~~~TC~Dgf~~ 71 (109)
|.+|++..+.++.++..-...-..++ .++++.+ ......-..-..++...|-.++....+...+.|..
T Consensus 237 w~~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~~~~~~l---~~~Gv~v~~~~~e~~~~~~~~~~~v~~~~~~~~~~ 309 (328)
T 3u65_B 237 WARIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNI---QKAGVSIVHLTPQEIQEWRTEFAADVKRIQARLPG 309 (328)
T ss_dssp HTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCEEECCCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCEEEeCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35789999999998866544333222 2334445 33222222234567888998888777777777753
Done!