BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048402
(677 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 184/665 (27%), Positives = 276/665 (41%), Gaps = 109/665 (16%)
Query: 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT-GPEGRIPRSMASLCN-LKSINLRG 61
L++L++ +N L L S+ LDLS N+ + ++ C LK + + G
Sbjct: 125 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 184
Query: 62 VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
+S ++ S CV++E LD+ S++ S + LG L +LD++ N + G
Sbjct: 185 NKISGDVD-----VSRCVNLEF--LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 236
Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF--- 178
+++ + L++L I +N+ G + + L L + + NK T E IP F
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGE-----IPDFLSG 288
Query: 179 ---QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
L L + P + S L+ L L ++ S P+ L LK LDL
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 236 LNQFHGQITD-LTKVT-QLLFLSVHSNNMSGP-LPLISSN----LVYLDLSNNSFSGSVS 288
N+F G++ + LT ++ LL L + SNN SGP LP + N L L L NN F+G +
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 289 ----------------HYLCYRINEPKSLIGL-KLKD-----NSLQGEIPDCWMSYQNLE 326
+YL I P SL L KL+D N L+GEIP M + LE
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 327 ILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLDVGENEFVGN 386
L L N TG++P+ NRL+G IP + L L + N F GN
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 387 IPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM 446
IP G D L LDL N GTIP + +G
Sbjct: 527 IPAELG-------------------------DCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 447 VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKET----------- 495
+AAN + ++Y+ + DG A + E + I +++ L
Sbjct: 562 IAANFI--AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 496 ---------------DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSL 540
D+S N L+ IP E+ ++ LN HN +G IP+ +G +R L
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 541 ESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQSFDASSFTGN-DLCG 599
+D S N+L G IPQ L+G IP Q ++F + F N LCG
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Query: 600 APLPK 604
PLP+
Sbjct: 740 YPLPR 744
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 184/665 (27%), Positives = 276/665 (41%), Gaps = 109/665 (16%)
Query: 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT-GPEGRIPRSMASLCN-LKSINLRG 61
L++L++ +N L L S+ LDLS N+ + ++ C LK + + G
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 62 VHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPI 121
+S ++ S CV++E LD+ S++ S + LG L +LD++ N + G
Sbjct: 188 NKISGDVD-----VSRCVNLEF--LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDF 239
Query: 122 PQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF--- 178
+++ + L++L I +N+ G + + L L + + NK T E IP F
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGE-----IPDFLSG 291
Query: 179 ---QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLG 235
L L + P + S L+ L L ++ S P+ L LK LDL
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 236 LNQFHGQITD-LTKVT-QLLFLSVHSNNMSGP-LPLISSN----LVYLDLSNNSFSGSVS 288
N+F G++ + LT ++ LL L + SNN SGP LP + N L L L NN F+G +
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 289 ----------------HYLCYRINEPKSLIGL-KLKD-----NSLQGEIPDCWMSYQNLE 326
+YL I P SL L KL+D N L+GEIP M + LE
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTI--PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 327 ILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLDVGENEFVGN 386
L L N TG++P+ NRL+G IP + L L + N F GN
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 387 IPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM 446
IP G D L LDL N GTIP + +G
Sbjct: 530 IPAELG-------------------------DCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 447 VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKET----------- 495
+AAN + ++Y+ + DG A + E + I +++ L
Sbjct: 565 IAANFI--AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 496 ---------------DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSL 540
D+S N L+ IP E+ ++ LN HN +G IP+ +G +R L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 541 ESIDFSVNQLSGEIPQXXXXXXXXXXXXXXXXKLTGKIPSSTQLQSFDASSFTGN-DLCG 599
+D S N+L G IPQ L+G IP Q ++F + F N LCG
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Query: 600 APLPK 604
PLP+
Sbjct: 743 YPLPR 747
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 16/240 (6%)
Query: 208 NLLNSGMSDLFPIRFLKSAFQLKFLDL----GLNQFHGQITD-LTKVTQLLFLSVHSNNM 262
NL SG++ P S L +L+ G+N G I + K+TQL +L + N+
Sbjct: 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113
Query: 263 SGPLPLISS---NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW 319
SG +P S LV LD S N+ SG++ I+ +L+G+ N + G IPD +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSY 169
Query: 320 MSYQNL-EILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLDV 378
S+ L + +S N+ TGK+P +N L G V + + + +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIP-PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 379 GENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPK 438
+N ++ + + L LR+N +G LP L L FL L+++ NNL G IP+
Sbjct: 229 AKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 101/289 (34%), Gaps = 94/289 (32%)
Query: 363 IPVSLKNCTALESLDVGE-NEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAF 421
IP SL N L L +G N VG IP + +++ L + N G +P L +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 422 LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGE 481
L LD + N L GT+P I+++ +V +T + +S
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVG---------------------ITFDGNRISGAI 165
Query: 482 AIEYDEILNLVKETDVSRNNLTKSIPLEMTNL-----------------------KATQS 518
Y L +SRN LT IP NL K TQ
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 519 LNFSHNSFT-----------------------GRIPESIGAMRSLESIDFSVNQLSGEIP 555
++ + NS G +P+ + ++ L S++ S N L GEIP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 556 QXXXXXXXXXXXXXXXXKLTGKIPSSTQLQSFDASSFTGND-LCGAPLP 603
Q LQ FD S++ N LCG+PLP
Sbjct: 286 Q------------------------GGNLQRFDVSAYANNKCLCGSPLP 310
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 73/187 (39%), Gaps = 44/187 (23%)
Query: 3 HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGV 62
L YL + + + G I + L + ++ LD S N G +P S++SL NL I G
Sbjct: 102 QLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGN 159
Query: 63 HLSQEISEILNIFSGCVS-------------------IELESLDLRSSSISG-------- 95
+S I + FS + + L +DL + + G
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219
Query: 96 -------HLTD--------QLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNK 140
HL ++G KNL+ LDL NN I G +PQ L L L L + N
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 141 LNGTLSE 147
L G + +
Sbjct: 280 LCGEIPQ 286
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 99/240 (41%), Gaps = 36/240 (15%)
Query: 42 GRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQL 101
G IP ++A L L + + ++S I + L+ L +LD +++SG L +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-----TLVTLDFSYNALSGTLPPSI 145
Query: 102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRV-LQIYNNKLNGTLSEIHFSNLTKLSWFR 160
NL + N I G IP S G S L + I N+L G + F+NL L++
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL-NLAFVD 203
Query: 161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPI 220
+ N L + V G + Q +H K+ +L G+S
Sbjct: 204 LSRNMLEGDAS---------VLFG------SDKNTQKIHLAKNSLAFDLGKVGLSK---- 244
Query: 221 RFLKSAFQLKFLDLGLNQFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLS 279
L LDL N+ +G + LT++ L L+V NN+ G +P NL D+S
Sbjct: 245 -------NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVS 296
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 53/314 (16%)
Query: 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
+L L+L NN++ D + L NLT+++RL+LS NT + +++ L +L+ +N
Sbjct: 106 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLNFS 159
Query: 61 GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
++ ++ + N+ + LE LD+ S+ +S L + NL++L NN I
Sbjct: 160 SNQVT-DLKPLANLTT------LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 210
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
P LG L+NL L + N+L GTL+ + S LTKL+ ++
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
G N+++ I P L L + + P + + K+L YL L + +SD+
Sbjct: 269 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 320
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
P+ L +L F N ++ L +T + +LS N +S PL + + + L
Sbjct: 321 SPVSSLTKLQRLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
Query: 277 DLSNNSFSGSVSHY 290
L++ +++ + +Y
Sbjct: 377 GLNDQAWTNAPVNY 390
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 96 HLTDQLGQFKNLDNLD---LANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIH-FS 151
LTD + KNL L + NN I P L +L+NL L ++NN+ +++I
Sbjct: 74 QLTD-ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ----ITDIDPLK 126
Query: 152 NLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLN 211
NLT L+ + N ++ + Q L F + V P L + L+ L++ +
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQ--QLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 212 SGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS- 270
+ +SD I L L+ L + N IT L +T L LS++ N + L S
Sbjct: 183 NKVSD---ISVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 238
Query: 271 SNLVYLDLSNNSFS 284
+NL LDL+NN S
Sbjct: 239 TNLTDLDLANNQIS 252
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 143/314 (45%), Gaps = 53/314 (16%)
Query: 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
+L L+L NN++ D + L NLT+++RL+LS NT + +++L L S+
Sbjct: 106 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTSLQ-- 154
Query: 61 GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
LS +++ ++ LE LD+ S+ +S L + NL++L NN I
Sbjct: 155 --QLSFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 210
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
P LG L+NL L + N+L GTL+ + S LTKL+ ++
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
G N+++ I P L L + + P + + K+L YL L + +SD+
Sbjct: 269 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 320
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
P+ L +L F N ++ L +T + +LS N +S PL + + + L
Sbjct: 321 SPVSSLTKLQRLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
Query: 277 DLSNNSFSGSVSHY 290
L++ +++ + +Y
Sbjct: 377 GLNDQAWTNAPVNY 390
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 96 HLTDQLGQFKNLDNLD---LANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIH-FS 151
LTD + KNL L + NN I P L +L+NL L ++NN+ +++I
Sbjct: 74 QLTD-ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ----ITDIDPLK 126
Query: 152 NLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLN 211
NLT L+ + N ++ + Q L F + V P L + L+ L++ +
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQ--QLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 212 SGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS- 270
+ +SD I L L+ L + N IT L +T L LS++ N + L S
Sbjct: 183 NKVSD---ISVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 238
Query: 271 SNLVYLDLSNNSFS 284
+NL LDL+NN S
Sbjct: 239 TNLTDLDLANNQIS 252
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 54/314 (17%)
Query: 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
+L L+L NN++ D + L NLT+++RL+LS NT + +++L L S L+
Sbjct: 106 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTS--LQ 154
Query: 61 GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
++ +++++ + + LE LD+ S+ +S L + NL++L NN I
Sbjct: 155 QLNFGNQVTDLKPLANLTT---LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 209
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
P LG L+NL L + N+L GTL+ + S LTKL+ ++
Sbjct: 210 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
G N+++ I P L L + + P + + K+L YL L + +SD+
Sbjct: 268 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 319
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
P+ L +L F N ++ L +T + +LS N +S PL + + + L
Sbjct: 320 SPVSSLTKLQRLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
Query: 277 DLSNNSFSGSVSHY 290
L++ +++ + +Y
Sbjct: 376 GLNDQAWTNAPVNY 389
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 54/314 (17%)
Query: 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
+L L+L NN++ D + L NLT+++RL+LS NT + +++L L S L+
Sbjct: 110 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTS--LQ 158
Query: 61 GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
+ +++++ + + LE LD+ S+ +S L + NL++L NN I
Sbjct: 159 QLSFGNQVTDLKPLANLTT---LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 213
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
P LG L+NL L + N+L GTL+ + S LTKL+ ++
Sbjct: 214 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 271
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
G N+++ I P L L + + P + + K+L YL L + +SD+
Sbjct: 272 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 323
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
P+ L +L F N ++ L +T + +LS N +S PL + + + L
Sbjct: 324 SPVSSLTKLQRLFF----ANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 379
Query: 277 DLSNNSFSGSVSHY 290
L++ +++ + +Y
Sbjct: 380 GLNDQAWTNAPVNY 393
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 54/314 (17%)
Query: 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
+L L+L NN++ D + L NLT+++RL+LS NT + +++L L S L+
Sbjct: 111 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTS--LQ 159
Query: 61 GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
+ +++++ + + LE LD+ S+ +S L + NL++L NN I
Sbjct: 160 QLSFGNQVTDLKPLANLTT---LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 214
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
P LG L+NL L + N+L GTL+ + S LTKL+ ++
Sbjct: 215 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 272
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
G N+++ I P L L + + P + + K+L YL L + +SD+
Sbjct: 273 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
P+ L +L F N ++ L +T + +LS N +S PL + + + L
Sbjct: 325 SPVSSLTKLQRLFF----YNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380
Query: 277 DLSNNSFSGSVSHY 290
L++ +++ + +Y
Sbjct: 381 GLNDQAWTNAPVNY 394
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 146/314 (46%), Gaps = 54/314 (17%)
Query: 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
+L L+L NN++ D + L NLT+++RL+LS NT + +++L L S L+
Sbjct: 106 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTS--LQ 154
Query: 61 GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
++ +++++ + + LE LD+ S+ +S L + NL++L NN I
Sbjct: 155 QLNFGNQVTDLKPLANLTT---LERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 209
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
P LG L+NL L + N+L GTL+ + S LTKL+ ++
Sbjct: 210 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 267
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
G N+++ I P L L + + P + + K+L YL L + +SD+
Sbjct: 268 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 319
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
P+ L +L F N ++ L +T + +LS N +S PL + + + L
Sbjct: 320 SPVSSLTKLQRLFF----SNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
Query: 277 DLSNNSFSGSVSHY 290
L++ +++ + +Y
Sbjct: 376 GLNDQAWTNAPVNY 389
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 143/314 (45%), Gaps = 53/314 (16%)
Query: 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLR 60
+L L+L NN++ D + L NLT+++RL+LS NT + +++L L S+
Sbjct: 106 LTNLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISD------ISALSGLTSLQ-- 154
Query: 61 GVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP 120
LS +++ ++ LE LD+ S+ +S L + NL++L NN I
Sbjct: 155 --QLSFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 210
Query: 121 IPQSLGHLSNLRVLQIYNNKLN--GTLSEIH-----------------FSNLTKLSWFRV 161
P LG L+NL L + N+L GTL+ + S LTKL+ ++
Sbjct: 211 TP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
Query: 162 GGNKLTLEVRHDWIPPF----QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDL 217
G N+++ I P L L + + P + + K+L YL L + +SD+
Sbjct: 269 GANQIS------NISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 320
Query: 218 FPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS-SNLVYL 276
P+ L +L F N ++ L +T + +LS N +S PL + + + L
Sbjct: 321 SPVSSLTKLQRLFF----SNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
Query: 277 DLSNNSFSGSVSHY 290
L++ +++ + +Y
Sbjct: 377 GLNDQAWTNAPVNY 390
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 96 HLTDQLGQFKNLDNLD---LANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIH-FS 151
LTD + KNL L + NN I P L +L+NL L ++NN+ +++I
Sbjct: 74 QLTD-ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ----ITDIDPLK 126
Query: 152 NLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLN 211
NLT L+ + N ++ + Q L F + V P L + L+ L++ +
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQ--QLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 212 SGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLIS- 270
+ +SD I L L+ L + N IT L +T L LS++ N + L S
Sbjct: 183 NKVSD---ISVLAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL 238
Query: 271 SNLVYLDLSNNSFS 284
+NL LDL+NN S
Sbjct: 239 TNLTDLDLANNQIS 252
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 25/187 (13%)
Query: 372 ALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNN 431
++ESL++ E+ F +I + T + F+++ L L + + G LP+ + L L+ L L+ N+
Sbjct: 252 SVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNH 309
Query: 432 LFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNL 491
+ + + AAN F + Y+ + +V + E L
Sbjct: 310 F--------DQLCQISAAN-FPSLTHLYI------------RGNVKKLHLGVGCLEKLGN 348
Query: 492 VKETDVSRNNLTKS--IPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQ 549
++ D+S N++ S L++ NL Q+LN SHN G ++ LE +D + +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 550 LSGEIPQ 556
L PQ
Sbjct: 409 LHINAPQ 415
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 33/162 (20%)
Query: 17 TIDSEALGNLTSISRLDLSLNTGPEGRIPRS------------MASLCNLKSINLRGVHL 64
T + L L + L+L N +G I ++ + S C L SI+ + H
Sbjct: 436 TSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHS 495
Query: 65 SQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQS 124
++S + DL +S++ D L K + L+LA NSI P+
Sbjct: 496 LGKMSHV---------------DLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRL 539
Query: 125 LGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKL 166
L LS + + +N L+ T S IHF L+W++ +KL
Sbjct: 540 LPILSQQSTINLSHNPLDCTCSNIHF-----LTWYKENLHKL 576
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 14/174 (8%)
Query: 74 IFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRV 133
+ G + +ESL+L+ S + F L LDL + G +P + L+ L+
Sbjct: 244 MLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKK 302
Query: 134 LQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN--KLTLEVRH-DWIPPFQLVALGFHNCYV 190
L + N + L +I +N L+ + GN KL L V + + Q + L ++
Sbjct: 303 LVLSVNHFD-QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEA 361
Query: 191 GSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAF----QLKFLDLGLNQFH 240
L + HLQ LNL ++ P+ AF QL+ LDL + H
Sbjct: 362 SDCCSLQLKNLSHLQTLNLSHNE-----PLGLQSQAFKECPQLELLDLAFTRLH 410
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 42/161 (26%)
Query: 7 LSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQ 66
L L++N++ D L NLT I+ L+LS G ++++++ L+SI
Sbjct: 74 LELKDNQIT---DLTPLKNLTKITELELS------GNPLKNVSAIAGLQSI--------- 115
Query: 67 EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLG 126
++LDL S+ I+ L NL L L N I P L
Sbjct: 116 -----------------KTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LA 154
Query: 127 HLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167
L+NL+ L I NN++N +NL+KL+ R NK++
Sbjct: 155 GLTNLQYLSIGNNQVNDL---TPLANLSKLTTLRADDNKIS 192
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 79 VSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYN 138
+ E LDL + I D+ F +L+ L+L N + P + +L NLR L + +
Sbjct: 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89
Query: 139 NKLN----GTLSEIHFSNLTKLSWFRVGGNKLTL 168
N+L G + + SNLTKL + NK+ +
Sbjct: 90 NRLKLIPLGVFTGL--SNLTKLD---ISENKIVI 118
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 18 IDSEALGN-LTSISRLDLSLNTGPEGRIPR--SMASLCNLKSINLRGVHLSQEISEILNI 74
I SE L + L ++ L+L N P+G I + S+ +L L+ + L LS
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498
Query: 75 FSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVL 134
++L L SSSI L K + L+LA+N I +P L LS R +
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEA-----LSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552
Query: 135 QIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKL 166
+ N L+ T S I+F L W++ KL
Sbjct: 553 NLRQNPLDCTCSNIYF-----LEWYKENMQKL 579
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 8/170 (4%)
Query: 74 IFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRV 133
+F G + +ES++L+ ++ F L LDL + +P L LS L+
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKK 305
Query: 134 LQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQ---LVALGFHNCYV 190
L + NK L +I SN L+ + GN LE+ + + + L +
Sbjct: 306 LVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364
Query: 191 GSRFPQWLHSQKHLQYLNL-LNSGMSDLFPIRFLKSAFQLKFLDLGLNQF 239
L + HLQ LNL N +S K QL+ LDL +
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLS--LKTEAFKECPQLELLDLAFTRL 412
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 108/456 (23%), Positives = 186/456 (40%), Gaps = 92/456 (20%)
Query: 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT-----GPEGRIPRSMASLCNLKSIN 58
L+ L++ +N +Q E NLT++ LDLS N + R+ M L ++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 59 LRGVHLSQ--EISEILNIFSGCVSIELESLDLRSSSISGHLTDQ-----LGQFKNLDNLD 111
L ++ Q EI + + +SL++ + I G + LG+F+N NL+
Sbjct: 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 112 LANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEI--HFSNLTKLSWFRVGGNKLTLE 169
+ S +L L NL + + L+ L +I F+ LT +S F + +T+E
Sbjct: 245 KFDKS-------ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS--VTIE 295
Query: 170 VRHDWIPPFQLVALGFHNCYVGSRFPQW-LHSQKH-------------------LQYLNL 209
D+ F L NC G +FP L S K L++L+L
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354
Query: 210 LNSGMSDLFPIRFLKSAF---QLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSG-- 264
+G+S F +S F LK+LDL N ++ + QL L +N+
Sbjct: 355 SRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 265 --PLPLISSNLVYLDLSNN----SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE-IPD 317
+ L NL+YLD+S+ +F+G N SL LK+ NS Q +PD
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGI--------FNGLSSLEVLKMAGNSFQENFLPD 464
Query: 318 CWMSYQNLEILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLD 377
+ +NL L+LS + +L P + + ++L+ L+
Sbjct: 465 IFTELRNLTFLDLS------------------------QCQLEQLSPTAFNSLSSLQVLN 500
Query: 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLP 413
+ N+ + ++P +R + + + L +N + P
Sbjct: 501 MASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 197 WLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN 237
+L HL LNL ++G D P+ K F+LK +DLGLN
Sbjct: 541 FLKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGLN 580
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 197 WLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN 237
+L HL LNL ++G ++ P+ K F+LK +DLGLN
Sbjct: 536 FLKGLSHLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLN 575
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 203 HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN 237
HL LNL ++G ++ P+ K F+LK +DLGLN
Sbjct: 537 HLHILNLESNGFDEI-PVEVFKDLFELKIIDLGLN 570
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 75 FSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVL 134
F G + +ES++L+ S + F + LDL + G +P + +++L+ L
Sbjct: 247 FEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKL 305
Query: 135 QIYNNKLNGTLSEIHFSNLTKLSWFRVGGN--KLTLEVRH-DWIPPFQLVALGFHNCYVG 191
+ N + L +I+ ++ L + GN KL L R + + Q + L +
Sbjct: 306 VLNANSFD-QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEAS 364
Query: 192 SRFPQWLHSQKHLQYLNLLNS---GMSDLFPIRFLKSAFQLKFLDLGLNQFH 240
L + +HLQYLNL + G+ D + K QL+ LD+ H
Sbjct: 365 DCCNLQLKNLRHLQYLNLSYNEPLGLED----QAFKECPQLELLDVAFTHLH 412
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 30/142 (21%)
Query: 48 MASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNL 107
+A L +L+ +NL+G N+ S+E+ L L S ++ +N+
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEI--LILSSCNLLSIDQQAFHGLRNV 501
Query: 108 DNLDLANNSIVGPIPQSLGHL---------SNLR--------------VLQIYNNKLNGT 144
++LDL++NS+ G +L HL +N+R ++ + +N L+ T
Sbjct: 502 NHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCT 561
Query: 145 LSEIHFSNLTKLSWFRVGGNKL 166
S IHF ++W++ +KL
Sbjct: 562 CSNIHF-----ITWYKENLHKL 578
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 37/276 (13%)
Query: 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIP--RSMASLCNLKSIN 58
+ L L + NK+ D AL NLT++ L L+ E I +A+L S+N
Sbjct: 87 LVKLTNLYIGTNKIT---DISALQNLTNLRELYLN-----EDNISDISPLANLTKXYSLN 138
Query: 59 LRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIV 118
L H ++S + N +G + + ++ + +LTD L +L L N I
Sbjct: 139 LGANHNLSDLSPLSN-XTGLNYLTVTESKVKDVTPIANLTD-------LYSLSLNYNQIE 190
Query: 119 GPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178
P L L++L Y N++ +N T+L+ ++G NK+T D P
Sbjct: 191 DISP--LASLTSLHYFTAYVNQITDI---TPVANXTRLNSLKIGNNKIT-----DLSPLA 240
Query: 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238
L L + +G+ +++ K L L LN G + + I L + QL L L NQ
Sbjct: 241 NLSQLTW--LEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQ 298
Query: 239 FHGQ----ITDLTKVTQLLFLSVHSNNMSGPLPLIS 270
+ I LT +T LFLS N+++ PL S
Sbjct: 299 LGNEDXEVIGGLTNLTT-LFLS--QNHITDIRPLAS 331
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 114/451 (25%), Positives = 178/451 (39%), Gaps = 67/451 (14%)
Query: 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT-----GPEGRIPRSMASLCNLKSIN 58
L+ L++ +N +Q E NLT++ LDLS N + R+ M L ++
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 59 LRGVHLSQ--EISEILNIFSGCVSIELESLDLRSSSISGHLTDQ-----LGQFKNLDNLD 111
L ++ Q EI + + +SL++ + I G + LG+F+N NL+
Sbjct: 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 112 LANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEI--HFSNLTKLSWFRVGGNKLTLE 169
+ S +L L NL + + L+ L +I F+ LT +S F + +T+E
Sbjct: 245 KFDKS-------ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS--VTIE 295
Query: 170 VRHDWIPPFQLVALGFHNCYVGSRFPQW-LHSQKH-------------------LQYLNL 209
D+ F L NC G +FP L S K L++L+L
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354
Query: 210 LNSGMSDLFPIRFLKSAF---QLKFLDLGLNQFHGQITDLTKVTQLLFLSV-HSN--NMS 263
+G+S F +S F LK+LDL N ++ + QL L HSN MS
Sbjct: 355 SRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 264 GPLPLIS-SNLVYLDLSNN----SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE-IPD 317
+S NL+YLD+S+ +F+G N SL LK+ NS Q +PD
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGI--------FNGLSSLEVLKMAGNSFQENFLPD 464
Query: 318 CWMSYQNLEILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLD 377
+ +NL L+LS + P N K +L+ LD
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524
Query: 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNF 408
N + + S + L L N+F
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQL 550
D+S+ L + P +L + Q LN SHN+F + SL+ +D+S+N +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 69 SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHL 128
+ I IFS E +L+ S++ +T + ++D + +ANNS + + Q + +L
Sbjct: 10 TPIKQIFSDDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQI-IANNSDIKSV-QGIQYL 65
Query: 129 SNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNC 188
NL L + NN++ + N+TKL + GNKLT D P L LG+
Sbjct: 66 PNLTSLNLSNNQITDISPIQYLPNVTKL---FLNGNKLT-----DIKPLANLKNLGW--L 115
Query: 189 YVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTK 248
++ + L S K L+ L L+ + + I L QL+ L LG N+ IT L++
Sbjct: 116 FLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI-TDITVLSR 174
Query: 249 VTQLLFLSVHSNNMSGPLPLIS-SNLVYLDLSNNSFS 284
+T+L LS+ N +S +PL + L L LS N S
Sbjct: 175 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 211
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 72/190 (37%), Gaps = 27/190 (14%)
Query: 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
L L L +N L G ID+ A LT + +LDLS N P + L +L +++L
Sbjct: 57 LTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 64 LSQEISEILNIFSGCVSIE----------------------LESLDLRSSSISGHLTDQL 101
L QE+ +F G +++ L L L + I
Sbjct: 116 L-QELGP--GLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAF 172
Query: 102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161
+LD L L N + P + L L L ++ N L+ +E+ L L + R+
Sbjct: 173 RGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV-LVPLRSLQYLRL 231
Query: 162 GGNKLTLEVR 171
N + R
Sbjct: 232 NDNPWVCDCR 241
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQL 550
D+S+ L + P +L + Q LN SHN+F + SL+ +D+S+N +
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 110/451 (24%), Positives = 175/451 (38%), Gaps = 67/451 (14%)
Query: 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNT-----GPEGRIPRSMASLCNLKSIN 58
L+ L++ +N +Q E NLT++ LDLS N + R+ M L ++
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209
Query: 59 LRGVHLSQ--EISEILNIFSGCVSIELESLDLRSSSISGHLTDQ-----LGQFKNLDNLD 111
L ++ Q EI + + +SL++ + I G + LG+F+N NL+
Sbjct: 210 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268
Query: 112 LANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEI--HFSNLTKLSWFRVGGNKLTLE 169
+ S +L L NL + + L+ L I F+ LT +S F + +T+E
Sbjct: 269 KFDKS-------ALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS--VTIE 319
Query: 170 VRHDWIPPFQLVALGFHNCYVGSRFPQW-LHSQKH-------------------LQYLNL 209
D+ F L NC G +FP L S K L++L+L
Sbjct: 320 RVKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 378
Query: 210 LNSGMSDLFPIRFLKSAF---QLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSG-- 264
+G+S F +S F LK+LDL N ++ + QL L +N+
Sbjct: 379 SRNGLS--FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436
Query: 265 --PLPLISSNLVYLDLSNN----SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE-IPD 317
+ L NL+YLD+S+ +F+G N SL LK+ NS Q +PD
Sbjct: 437 EFSVFLSLRNLIYLDISHTHTRVAFNGI--------FNGLSSLEVLKMAGNSFQENFLPD 488
Query: 318 CWMSYQNLEILELSNNKFTGKLPNXXXXXXXXXXXXXGKNRLSGTIPVSLKNCTALESLD 377
+ +NL L+LS + P N K +L+ LD
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548
Query: 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNF 408
N + + S + L L N+F
Sbjct: 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 32/154 (20%)
Query: 17 TIDSEALGNLTSISRL-----DLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEI 71
TID+ L L + L+L P +P S+ASL L+ +++R E++E+
Sbjct: 110 TIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC---PELTEL 166
Query: 72 LNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG--PIPQSLGHLS 129
+ TD G+ + L NL G +P S+ +L
Sbjct: 167 PEPLAS--------------------TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ 206
Query: 130 NLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163
NL+ L+I N+ L+ IH +L KL + G
Sbjct: 207 NLKSLKIRNSPLSALGPAIH--HLPKLEELDLRG 238
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQL 550
D+S+ L + P +L + Q LN SHN+F + SL+ +D+S+N +
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 371 TALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADN 430
++LE L + N F N + L L PT L+ LQ+L+++ N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 431 NLFG--TIP-KCINNI 443
N F T P KC+N++
Sbjct: 210 NFFSLDTFPYKCLNSL 225
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 27/190 (14%)
Query: 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
L L L +N L ID+ A L + +LDLS N P + L L +++L
Sbjct: 57 LTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 115
Query: 64 LSQEISEILNIFSGCVSIE----------------------LESLDLRSSSISGHLTDQL 101
L QE+ +F G +++ L L L + IS
Sbjct: 116 L-QELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 172
Query: 102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161
+LD L L N + P + L L L ++ N L+ +E + L L + R+
Sbjct: 173 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRL 231
Query: 162 GGNKLTLEVR 171
N + R
Sbjct: 232 NDNPWVCDCR 241
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161
G + + +LDL+NN I L NL+ L + +N +N T+ E FS+L L +
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 81
Query: 162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQ--KHLQYLNLLNSGMSDLFP 219
N L+ + W P L +L F N +G+ + + HL L +L G D F
Sbjct: 82 SYNYLS-NLSSSWFKP--LSSLTFLN-LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 137
Query: 220 IRFLKSAFQLKFLD 233
K L FL+
Sbjct: 138 KIQRKDFAGLTFLE 151
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 81 IELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNK 140
+ L++L L S+ I+ D +L++LDL+ N + LS+L L + N
Sbjct: 50 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 109
Query: 141 LNGTLSEIH-FSNLTKLSWFRVGG-NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWL 198
TL E FS+LTKL RVG + T R D+ L L + S P+ L
Sbjct: 110 YK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 168
Query: 199 HSQKHLQYLNL 209
S +++ +L L
Sbjct: 169 KSIQNVSHLIL 179
>pdb|1JGW|M Chain M, Photosynthetic Reaction Center Mutant With Thr M 21
Replaced With Leu
Length = 307
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 107 LDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLS----EIHFSNLTKLSWFRVG 162
L++++LAN S VGP LG N ++ IY L G LS + F + W++ G
Sbjct: 21 LEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSL-GVLSLFSGLMWFFTIGIWFWYQAG 79
Query: 163 GN 164
N
Sbjct: 80 WN 81
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 27/190 (14%)
Query: 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH 63
L L L +N L ID+ A L + +LDLS N P + L L +++L
Sbjct: 58 LTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 64 LSQEISEILNIFSGCVSIE----------------------LESLDLRSSSISGHLTDQL 101
L QE+ +F G +++ L L L + IS
Sbjct: 117 L-QELGP--GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173
Query: 102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161
+LD L L N + P + L L L ++ N L+ +E + L L + R+
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRL 232
Query: 162 GGNKLTLEVR 171
N + R
Sbjct: 233 NDNPWVCDCR 242
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 512 NLKATQSLNFSHNSFTG-RIPESIGAMRSLESIDFSVNQL 550
NLKA L+ S N + S G + SL+SIDFS NQ+
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 73 NIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLR 132
N F+G + LDL + + K+L L+LA N I ++ L NL+
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 133 VLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTL 168
VL + N L G L +F L K+++ + N + +
Sbjct: 318 VLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAI 352
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161
G + + +LDL+NN I L NL+ L + +N +N T+ E FS+L L +
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107
Query: 162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQ--KHLQYLNLLNSGMSDLFP 219
N L+ + W P L +L F N +G+ + + HL L +L G D F
Sbjct: 108 SYNYLS-NLSSSWFKP--LSSLTFLN-LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163
Query: 220 IRFLKSAFQLKFLD 233
K L FL+
Sbjct: 164 KIQRKDFAGLTFLE 177
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 81 IELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNK 140
+ L++L L S+ I+ D +L++LDL+ N + LS+L L + N
Sbjct: 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135
Query: 141 LNGTLSEIH-FSNLTKLSWFRVGG-NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWL 198
TL E FS+LTKL RVG + T R D+ L L + S P+ L
Sbjct: 136 YK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194
Query: 199 HSQKHLQYL 207
S +++ +L
Sbjct: 195 KSIQNVSHL 203
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 27/101 (26%)
Query: 100 QLGQFKNLDNLDLANNSIVG-------------------------PIPQSLGHLSNLRVL 134
+L +K+L +DL+NN I P P++ L +LR+L
Sbjct: 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL 107
Query: 135 QIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWI 175
++ N ++ + E F++L+ LS +G N L + W+
Sbjct: 108 SLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCNMQWL 147
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 203 HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM 262
+LQYL++ N+ +SDL P+ L LK D N+ I+ L + L+ + + +N +
Sbjct: 152 NLQYLSIGNAQVSDLTPLANLSKLTTLKADD---NKIS-DISPLASLPNLIEVHLKNNQI 207
Query: 263 SGPLPLI-SSNLVYLDLSNNSFSGSVSHY 290
S PL +SNL + L+N + + Y
Sbjct: 208 SDVSPLANTSNLFIVTLTNQTITNQPVFY 236
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Query: 3 HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLS---LNTGPEGRIPRSMASLCNLKSINL 59
++ YL+L NKL D AL LT+++ L L+ L + P G + L NLK + L
Sbjct: 64 NVRYLALGGNKLH---DISALKELTNLTYLILTGNQLQSLPNGVFDK----LTNLKELVL 116
Query: 60 RGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119
L + + + + L L+S + + D+L NL LDL+ N +
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKL---TNLTELDLSYNQLQS 171
Query: 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164
L+ L+ L++Y N+L + F LT L + + N
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWLHDN 215
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 69 SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHL 128
+ I IF E +L+ S++ +T + ++D + +ANNS + + Q + +L
Sbjct: 7 TPIKQIFPDDAFAETIKANLKKKSVTDAVTQ--NELNSIDQI-IANNSDIKSV-QGIQYL 62
Query: 129 SNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKL 166
N+R L + NKL+ + LT L++ + GN+L
Sbjct: 63 PNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQL 97
>pdb|3ZR5|A Chain A, Structure Of Galactocerebrosidase From Mouse
pdb|3ZR6|A Chain A, Structure Of Galactocerebrosidase From Mouse In Complex
With Galactose
Length = 656
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 126 GHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHD 173
G L ++ LQ++ KL +HF L L W G TLE+ D
Sbjct: 387 GSLREIQELQVWYTKLGTPQQRLHFKQLDTL-WLLDGSGSFTLELEED 433
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 69 SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHL 128
+ I IF E +L+ S++ +T + ++D + +ANNS + + Q + +L
Sbjct: 7 TPIKQIFPDDAFAETIKANLKKKSVTDAVTQ--NELNSIDQI-IANNSDIKSV-QGIQYL 62
Query: 129 SNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKL 166
N+R L + NKL+ + LT L++ + GN+L
Sbjct: 63 PNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQL 97
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 110 LDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164
LDL NN I+ IP+ + HL L+ L + +N+L + F LT L + + N
Sbjct: 455 LDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGV-FDRLTSLQYIWLHDN 507
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,728,795
Number of Sequences: 62578
Number of extensions: 667196
Number of successful extensions: 2027
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 217
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)