Query 048402
Match_columns 677
No_of_seqs 499 out of 4145
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 09:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-63 2.7E-68 582.1 40.7 537 2-601 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.6E-58 9.9E-63 535.3 41.3 512 26-599 68-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.5E-40 5.4E-45 326.4 6.4 394 54-546 54-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 8.4E-39 1.8E-43 315.7 6.8 362 5-406 81-449 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 7.9E-41 1.7E-45 316.0 -14.0 473 4-575 47-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.6E-39 5.5E-44 305.8 -12.6 475 83-598 47-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.7E-37 3.8E-42 322.7 -3.9 484 6-574 2-488 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1E-36 2.2E-41 317.0 -6.4 482 31-595 2-486 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.2E-33 2.6E-38 281.3 -3.0 366 51-551 6-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.1E-33 2.3E-38 281.6 -4.0 387 1-546 6-394 (1255)
11 KOG4237 Extracellular matrix p 99.9 5.4E-28 1.2E-32 229.1 -5.0 421 82-572 68-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 2.4E-22 5.3E-27 234.9 26.8 347 46-431 552-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 6.6E-22 1.4E-26 231.3 26.1 81 489-573 824-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 9.7E-25 2.1E-29 207.1 -4.3 300 299-599 67-383 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 1.9E-21 4.2E-26 210.5 17.1 261 229-580 203-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.1E-20 4.4E-25 202.6 17.7 168 251-445 303-470 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 5.4E-19 1.2E-23 193.1 13.1 244 253-575 181-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 7.7E-19 1.7E-23 191.9 11.9 13 228-240 200-212 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2E-19 4.4E-24 183.3 -1.1 162 272-433 24-206 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.7E-18 5.7E-23 175.1 3.1 210 6-241 2-235 (319)
21 KOG0617 Ras suppressor protein 99.7 7.7E-19 1.7E-23 148.0 -4.5 182 346-580 32-217 (264)
22 KOG0617 Ras suppressor protein 99.7 3.6E-18 7.9E-23 143.9 -3.6 182 298-556 32-217 (264)
23 PLN03150 hypothetical protein; 99.5 1.4E-14 3.1E-19 158.3 10.6 117 491-607 419-538 (623)
24 PLN03150 hypothetical protein; 99.3 9E-12 2E-16 136.4 11.4 114 421-580 419-533 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 2.2E-13 4.8E-18 136.5 -4.9 193 324-573 76-271 (722)
26 COG4886 Leucine-rich repeat (L 99.2 2.7E-11 5.8E-16 127.1 6.8 197 303-579 97-294 (394)
27 KOG1909 Ran GTPase-activating 99.2 2.6E-12 5.7E-17 121.7 -1.8 233 271-574 30-310 (382)
28 KOG1259 Nischarin, modulator o 99.1 9.9E-12 2.2E-16 114.9 1.2 132 395-578 283-415 (490)
29 COG4886 Leucine-rich repeat (L 99.1 5.8E-11 1.2E-15 124.6 6.9 149 274-433 96-245 (394)
30 KOG0532 Leucine-rich repeat (L 99.1 1.8E-12 3.8E-17 130.1 -4.3 190 303-549 79-271 (722)
31 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.3E-16 119.8 2.2 180 200-383 119-313 (505)
32 KOG1909 Ran GTPase-activating 99.1 1.5E-11 3.2E-16 116.7 -0.3 193 24-240 27-254 (382)
33 KOG3207 Beta-tubulin folding c 99.1 2.8E-11 6E-16 118.0 0.9 209 49-262 118-338 (505)
34 PF14580 LRR_9: Leucine-rich r 99.0 2.6E-10 5.5E-15 101.8 5.1 129 23-162 15-148 (175)
35 KOG1259 Nischarin, modulator o 99.0 6E-11 1.3E-15 109.8 0.3 201 21-265 208-414 (490)
36 PF14580 LRR_9: Leucine-rich r 99.0 6.4E-10 1.4E-14 99.3 6.6 125 82-234 20-147 (175)
37 PF13855 LRR_8: Leucine rich r 99.0 6.4E-10 1.4E-14 81.5 4.0 60 515-574 2-61 (61)
38 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.8E-14 79.8 4.5 61 490-550 1-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.9 2.3E-09 4.9E-14 120.1 6.9 150 4-162 525-676 (889)
40 KOG4658 Apoptotic ATPase [Sign 98.8 3.4E-09 7.3E-14 118.7 6.3 131 25-165 521-653 (889)
41 KOG0531 Protein phosphatase 1, 98.8 4.5E-10 9.8E-15 117.8 -2.7 223 101-340 91-322 (414)
42 KOG0531 Protein phosphatase 1, 98.8 1.4E-09 3.1E-14 114.1 -0.2 246 270-579 71-322 (414)
43 KOG1859 Leucine-rich repeat pr 98.6 1.3E-09 2.8E-14 112.8 -5.4 182 340-577 102-294 (1096)
44 KOG1859 Leucine-rich repeat pr 98.5 1.4E-09 3E-14 112.6 -7.1 183 45-241 102-293 (1096)
45 KOG2982 Uncharacterized conser 98.5 5.1E-08 1.1E-12 90.7 1.8 207 53-265 46-264 (418)
46 KOG2120 SCF ubiquitin ligase, 98.4 6.4E-09 1.4E-13 96.7 -6.3 180 324-572 186-373 (419)
47 KOG2120 SCF ubiquitin ligase, 98.3 1.2E-08 2.5E-13 95.0 -5.8 178 27-213 185-374 (419)
48 COG5238 RNA1 Ran GTPase-activa 98.2 1.1E-07 2.4E-12 87.4 -2.1 113 272-384 158-285 (388)
49 KOG2982 Uncharacterized conser 98.1 4.1E-07 8.8E-12 84.9 -0.8 111 101-212 41-156 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.1 8.9E-07 1.9E-11 81.6 1.4 93 48-141 26-132 (388)
51 KOG4579 Leucine-rich repeat (L 98.1 8.4E-08 1.8E-12 78.8 -5.0 57 493-551 80-136 (177)
52 PF12799 LRR_4: Leucine Rich r 98.0 6.4E-06 1.4E-10 54.9 3.0 36 515-551 2-37 (44)
53 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 53.7 2.9 38 538-576 1-38 (44)
54 PF13306 LRR_5: Leucine rich r 97.9 5.1E-05 1.1E-09 65.4 7.7 128 17-157 2-129 (129)
55 KOG3665 ZYG-1-like serine/thre 97.9 6.7E-06 1.5E-10 90.2 2.5 139 27-172 122-268 (699)
56 KOG4579 Leucine-rich repeat (L 97.8 7.9E-07 1.7E-11 73.2 -3.9 111 27-147 27-140 (177)
57 PRK15386 type III secretion pr 97.8 4.4E-05 9.6E-10 77.0 7.3 77 343-432 48-124 (426)
58 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.3E-10 87.5 3.0 136 52-194 122-266 (699)
59 KOG1644 U2-associated snRNP A' 97.7 7.3E-05 1.6E-09 66.3 5.5 108 82-214 43-152 (233)
60 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.3E-09 65.3 5.8 105 324-430 43-150 (233)
61 PRK15386 type III secretion pr 97.6 0.0002 4.4E-09 72.3 8.2 92 319-429 48-141 (426)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00027 5.8E-09 60.9 7.4 36 100-136 30-65 (129)
63 KOG4341 F-box protein containi 97.4 4E-06 8.6E-11 82.3 -6.4 149 250-401 294-457 (483)
64 KOG4341 F-box protein containi 97.2 1.9E-05 4.2E-10 77.6 -4.5 156 270-427 293-459 (483)
65 KOG2739 Leucine-rich acidic nu 96.8 0.001 2.2E-08 62.0 3.5 108 101-234 39-150 (260)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00062 1.4E-08 63.4 1.5 78 82-161 66-150 (260)
67 KOG2123 Uncharacterized conser 96.1 0.00028 6E-09 65.8 -4.5 56 4-65 21-76 (388)
68 KOG4308 LRR-containing protein 96.0 1.9E-05 4.2E-10 82.9 -14.4 113 29-142 89-217 (478)
69 KOG1947 Leucine rich repeat pr 96.0 0.001 2.3E-08 72.0 -1.9 131 25-161 186-328 (482)
70 KOG2123 Uncharacterized conser 96.0 0.00033 7.2E-09 65.3 -4.8 41 198-238 59-99 (388)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.0066 1.4E-07 33.4 1.2 12 516-527 2-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.5 0.0069 1.5E-07 33.4 1.0 21 539-560 1-21 (22)
73 KOG1947 Leucine rich repeat pr 95.4 0.0024 5.2E-08 69.1 -2.0 175 49-238 185-373 (482)
74 KOG4308 LRR-containing protein 94.3 0.00036 7.8E-09 73.5 -11.2 162 272-433 116-303 (478)
75 PF13504 LRR_7: Leucine rich r 91.9 0.09 1.9E-06 26.7 1.1 9 517-525 4-12 (17)
76 KOG0473 Leucine-rich repeat pr 91.7 0.0059 1.3E-07 55.7 -5.9 84 489-575 41-124 (326)
77 smart00370 LRR Leucine-rich re 90.4 0.21 4.5E-06 28.7 1.8 14 538-551 2-15 (26)
78 smart00369 LRR_TYP Leucine-ric 90.4 0.21 4.5E-06 28.7 1.8 14 538-551 2-15 (26)
79 smart00370 LRR Leucine-rich re 90.2 0.28 6.1E-06 28.1 2.2 21 129-150 2-22 (26)
80 smart00369 LRR_TYP Leucine-ric 90.2 0.28 6.1E-06 28.1 2.2 21 129-150 2-22 (26)
81 KOG0473 Leucine-rich repeat pr 89.9 0.013 2.8E-07 53.6 -5.5 88 47-142 37-124 (326)
82 KOG4242 Predicted myosin-I-bin 88.8 1.3 2.9E-05 45.3 7.0 61 106-166 215-280 (553)
83 PF13516 LRR_6: Leucine Rich r 86.7 0.19 4.1E-06 28.2 -0.1 14 538-551 2-15 (24)
84 PF13516 LRR_6: Leucine Rich r 85.6 0.34 7.3E-06 27.2 0.6 16 52-67 2-17 (24)
85 KOG3864 Uncharacterized conser 84.3 0.16 3.5E-06 45.8 -1.8 33 325-357 103-135 (221)
86 PF15102 TMEM154: TMEM154 prot 80.4 2.5 5.4E-05 36.0 3.9 20 639-658 70-89 (146)
87 KOG3864 Uncharacterized conser 76.8 0.58 1.3E-05 42.3 -0.8 82 28-114 102-185 (221)
88 smart00365 LRR_SD22 Leucine-ri 76.3 2.2 4.7E-05 24.5 1.7 14 538-551 2-15 (26)
89 KOG4242 Predicted myosin-I-bin 71.6 15 0.00032 38.1 7.3 63 272-335 215-280 (553)
90 smart00364 LRR_BAC Leucine-ric 70.3 3 6.4E-05 23.9 1.3 13 539-551 3-15 (26)
91 PF08693 SKG6: Transmembrane a 70.0 6.6 0.00014 25.2 2.9 23 627-649 11-33 (40)
92 TIGR00864 PCC polycystin catio 69.6 2.7 6E-05 52.9 2.2 37 544-580 1-37 (2740)
93 PF01102 Glycophorin_A: Glycop 69.3 1.1 2.4E-05 37.2 -0.8 27 629-655 65-91 (122)
94 PF04478 Mid2: Mid2 like cell 67.4 5.1 0.00011 34.4 2.7 10 629-638 50-59 (154)
95 smart00368 LRR_RI Leucine rich 64.6 5.6 0.00012 23.3 1.8 16 52-67 2-17 (28)
96 PTZ00382 Variant-specific surf 59.0 4.7 0.0001 32.1 1.0 21 629-649 67-87 (96)
97 KOG3763 mRNA export factor TAP 55.5 8.6 0.00019 40.6 2.4 38 200-237 216-254 (585)
98 PF08374 Protocadherin: Protoc 53.9 6.3 0.00014 35.9 1.1 26 626-651 36-61 (221)
99 KOG3763 mRNA export factor TAP 46.1 9.7 0.00021 40.2 1.1 15 298-312 217-231 (585)
100 PF01299 Lamp: Lysosome-associ 43.1 11 0.00023 37.9 0.9 22 630-651 272-293 (306)
101 smart00367 LRR_CC Leucine-rich 38.3 20 0.00044 20.3 1.2 8 28-35 3-10 (26)
102 PF08114 PMP1_2: ATPase proteo 35.1 21 0.00045 22.8 0.9 11 645-655 24-34 (43)
103 PF12191 stn_TNFRSF12A: Tumour 32.1 29 0.00064 28.7 1.6 22 634-655 85-106 (129)
104 PF02439 Adeno_E3_CR2: Adenovi 31.5 15 0.00032 23.2 -0.1 13 631-643 6-18 (38)
105 PF05454 DAG1: Dystroglycan (D 29.6 18 0.00038 35.4 0.0 19 644-662 162-180 (290)
106 PF10725 DUF2517: Protein of u 27.8 92 0.002 22.0 3.1 28 641-668 20-47 (63)
107 PF14575 EphA2_TM: Ephrin type 27.5 21 0.00045 26.9 0.1 17 635-651 8-24 (75)
108 PF15012 DUF4519: Domain of un 27.2 64 0.0014 22.5 2.3 23 630-652 30-52 (56)
109 PF04478 Mid2: Mid2 like cell 26.7 64 0.0014 28.0 2.8 21 625-645 50-70 (154)
110 PF01034 Syndecan: Syndecan do 25.2 24 0.00053 25.3 0.1 11 645-655 29-39 (64)
111 PF12606 RELT: Tumour necrosis 24.4 34 0.00074 23.4 0.6 21 644-664 15-35 (50)
112 PF07204 Orthoreo_P10: Orthore 24.3 32 0.00069 26.7 0.5 29 627-655 41-69 (98)
113 PF02009 Rifin_STEVOR: Rifin/s 22.5 27 0.00059 34.5 -0.2 35 629-663 258-292 (299)
114 TIGR01478 STEVOR variant surfa 21.8 27 0.00058 33.6 -0.4 12 648-659 280-291 (295)
115 TIGR00864 PCC polycystin catio 21.0 51 0.0011 42.5 1.6 33 496-528 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-63 Score=582.11 Aligned_cols=537 Identities=33% Similarity=0.524 Sum_probs=467.9
Q ss_pred CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhc-CCCCCCEEEccCCcCCcccchhhhhccccCc
Q 048402 2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMA-SLCNLKSINLRGVHLSQEISEILNIFSGCVS 80 (677)
Q Consensus 2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 80 (677)
.+++.|+|++|.+.|.+ +..|..+++|++|+|+ ++.+.+.+|..+. .+++|++|++++|.+++.+|. +.++
T Consensus 69 ~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls-~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~---- 140 (968)
T PLN00113 69 SRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLS-NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP---- 140 (968)
T ss_pred CcEEEEEecCCCccccC-ChHHhCCCCCCEEECC-CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC----
Confidence 36788999999988777 7788899999999999 7777878887665 889999999999998887775 3455
Q ss_pred CCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEE
Q 048402 81 IELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR 160 (677)
Q Consensus 81 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~ 160 (677)
+|++|++++|.+++.+|..++++++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|. .++++++|+.|+
T Consensus 141 -~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~ 218 (968)
T PLN00113 141 -NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIY 218 (968)
T ss_pred -CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEE
Confidence 899999999999888888899999999999999998888899999999999999999998877887 788999999999
Q ss_pred eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCc
Q 048402 161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240 (677)
Q Consensus 161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~ 240 (677)
+++|.+.+..+..+..+++|++|++++|.+.+..|..++++++|++|++++|.+++..|..+. .+++|++|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeec
Confidence 999999888888888899999999999999888899999999999999999998887776663 5788999999999888
Q ss_pred cccCC-ccccccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCC
Q 048402 241 GQITD-LTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP 316 (677)
Q Consensus 241 ~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 316 (677)
+.++. +..+++|+.|++++|.+.+..|.. +++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.+..|
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG----KHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh----CCCCCcEEECCCCeeEeeCC
Confidence 76665 455688999999999888877654 67889999999988887776554 37889999999999988888
Q ss_pred cccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccC
Q 048402 317 DCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFS 396 (677)
Q Consensus 317 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 396 (677)
..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..|..|..+++|+.|++++|.+.+.+|.... .++
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~ 452 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMP 452 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCC
Confidence 8888888999999999999888888888899999999999999888888888999999999999998887777655 688
Q ss_pred CceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeE
Q 048402 397 RMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASV 476 (677)
Q Consensus 397 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (677)
+|+.|++++|++.+.+|..+ ..++|+.|++++|++.+.+|..+.++++
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~------------------------------- 500 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE------------------------------- 500 (968)
T ss_pred CCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc-------------------------------
Confidence 89999999999888877765 4578999999999988887776655444
Q ss_pred eecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCcc
Q 048402 477 VSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQ 556 (677)
Q Consensus 477 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 556 (677)
|+.|++++|++.+.+|..+.++++|++|+|++|.+++.+|..|+++++|++|++++|++++.+|.
T Consensus 501 ---------------L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 501 ---------------LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ---------------cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCC-CCCCCC
Q 048402 557 SMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-DLCGAP 601 (677)
Q Consensus 557 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~ 601 (677)
.+..+++|++|++++|++.|.+|..+++.++...++.|| .+||.+
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999988888888889999 688754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.6e-58 Score=535.29 Aligned_cols=512 Identities=30% Similarity=0.503 Sum_probs=461.6
Q ss_pred CCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhh-hccccCcCCccEEEcccCcCccccccccCCC
Q 048402 26 LTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILN-IFSGCVSIELESLDLRSSSISGHLTDQLGQF 104 (677)
Q Consensus 26 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 104 (677)
..+++.|+|+ ++.+.+.++.++..+++|++|++++|++.+.+|..+. .+. +|++|++++|.+++.+|. +.+
T Consensus 68 ~~~v~~L~L~-~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~-----~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 68 SSRVVSIDLS-GKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS-----SLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred CCcEEEEEec-CCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCC-----CCCEEECcCCccccccCc--ccc
Confidence 4579999999 7788888899999999999999999999988887654 788 999999999999988775 568
Q ss_pred CCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEE
Q 048402 105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALG 184 (677)
Q Consensus 105 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 184 (677)
++|++|++++|.+++..|..++++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..+..+..+.+|+.|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 9999999999999989999999999999999999999888887 799999999999999999988899999999999999
Q ss_pred eecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccC-CccccccccEEEcccCCCC
Q 048402 185 FHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT-DLTKVTQLLFLSVHSNNMS 263 (677)
Q Consensus 185 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~l~~n~~~ 263 (677)
+++|.+.+.+|..++.+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 99999999999999999999999999999988877766 558899999999999987655 4556799999999999998
Q ss_pred CCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCC
Q 048402 264 GPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP 340 (677)
Q Consensus 264 ~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 340 (677)
+..|.. +++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+..|
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALT----SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHh----cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 887754 67899999999999888776654 48899999999999998999999999999999999999998899
Q ss_pred cCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCC
Q 048402 341 NSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLA 420 (677)
Q Consensus 341 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 420 (677)
..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+. .++.|+.|++++|.+++.++..+..++
T Consensus 374 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCC
Confidence 9999999999999999999999999999999999999999999988887765 799999999999999998888888999
Q ss_pred CCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccC
Q 048402 421 FLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500 (677)
Q Consensus 421 ~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 500 (677)
+|+.|++++|++.+.+|..+. .++|+.|++++|
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~~-----------------------------------------------~~~L~~L~ls~n 485 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSFG-----------------------------------------------SKRLENLDLSRN 485 (968)
T ss_pred CCcEEECcCceeeeecCcccc-----------------------------------------------cccceEEECcCC
Confidence 999999999999877775431 244699999999
Q ss_pred cccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402 501 NLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 501 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
++++.+|..+.++++|+.|++++|++.+.+|+.+.++++|++|++++|.+++.+|..+..+++|+.||+++|++.+.+|.
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-CCCCCcCcccccCCCCCC
Q 048402 581 S-TQLQSFDASSFTGNDLCG 599 (677)
Q Consensus 581 ~-~~~~~l~~~~~~~n~l~~ 599 (677)
. ..+..+..+++++|.+.|
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred hHhcCcccCEEeccCCccee
Confidence 5 556778888899887665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-40 Score=326.43 Aligned_cols=394 Identities=20% Similarity=0.197 Sum_probs=287.6
Q ss_pred CCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCE
Q 048402 54 LKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRV 133 (677)
Q Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 133 (677)
-+.||.+++.+...--..+. +..++.-+.|++++|.+..+.+..|.++++|+.+++.+|.++ .+|.......+|+.
T Consensus 54 ~~lldcs~~~lea~~~~~l~---g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLK---GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEK 129 (873)
T ss_pred ceeeecCccccccccccccC---CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeE
Confidence 45678888776643222222 222225677999999999888888999999999999999998 77887777788999
Q ss_pred EEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCC
Q 048402 134 LQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSG 213 (677)
Q Consensus 134 L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 213 (677)
|+|.+|.|+ ++....+..++.|+.|||+.|.++......|....++++|+|++|.|+..-...|..+.+|..|.|++|+
T Consensus 130 L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred Eeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 999999998 7777789999999999999999998888888877888888888888888777888888888888888888
Q ss_pred CCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhh
Q 048402 214 MSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCY 293 (677)
Q Consensus 214 i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 293 (677)
++.+.+. .++.+++|+.|+|..|+|.-. .. .
T Consensus 209 ittLp~r-~Fk~L~~L~~LdLnrN~iriv----------------------------------------------e~--l 239 (873)
T KOG4194|consen 209 ITTLPQR-SFKRLPKLESLDLNRNRIRIV----------------------------------------------EG--L 239 (873)
T ss_pred ccccCHH-Hhhhcchhhhhhccccceeee----------------------------------------------hh--h
Confidence 8877444 346677777777777766421 00 0
Q ss_pred ccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCC
Q 048402 294 RINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTAL 373 (677)
Q Consensus 294 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 373 (677)
.|.++++|+.|.+..|.++..-...|..+.++++|+|+.|++...-..++.++++|+.|+++.|.|..+-++++..+++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 23345666677777777666556667777778888888887777777777778888888888888877777777777888
Q ss_pred CEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccC
Q 048402 374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFT 453 (677)
Q Consensus 374 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 453 (677)
++|+|++|+++ .+++..+..+..|++|+|+.|++...-...|..+++|+.|||++|.+++.+-+.
T Consensus 320 ~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa-------------- 384 (873)
T KOG4194|consen 320 KELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA-------------- 384 (873)
T ss_pred eeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc--------------
Confidence 88888888876 666666667777788888888777666677777888888888888776433321
Q ss_pred cccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc
Q 048402 454 RSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES 533 (677)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 533 (677)
...+.++++|+.|++.+|++..+...+|.++.+|++|||.+|.|..+.|++
T Consensus 385 -----------------------------a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 385 -----------------------------AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred -----------------------------hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence 111223455566666666666555556666666666666666666666666
Q ss_pred cccCCCCcEEECC
Q 048402 534 IGAMRSLESIDFS 546 (677)
Q Consensus 534 ~~~l~~L~~L~Ls 546 (677)
|..+ .|++|-+.
T Consensus 436 Fe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 436 FEPM-ELKELVMN 447 (873)
T ss_pred cccc-hhhhhhhc
Confidence 6666 66666554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-39 Score=315.69 Aligned_cols=362 Identities=26% Similarity=0.297 Sum_probs=193.6
Q ss_pred cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402 5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84 (677)
Q Consensus 5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~ 84 (677)
+.||+++|.++ .++...|.++++|+.+++. +|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++ .|+
T Consensus 81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~-~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-----alr 152 (873)
T KOG4194|consen 81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLN-KNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-----ALR 152 (873)
T ss_pred eeeeccccccc-cCcHHHHhcCCcceeeeec-cchhh-hcccccccccceeEEeeeccccccccHHHHHhHh-----hhh
Confidence 34555555555 4444455555555555554 33333 3444444444455555555555555555555555 555
Q ss_pred EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402 85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164 (677)
Q Consensus 85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n 164 (677)
+||||.|.++.+....|..-.++++|+|++|.|+......|.++.+|..|.|+.|+++ .+|...|.++++|+.|+|..|
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccc
Confidence 5555555555444444555455555555555555554555555555555555555555 555555555555555555555
Q ss_pred ccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccC
Q 048402 165 KLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT 244 (677)
Q Consensus 165 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 244 (677)
.+......+ |..+++|+.|.+..|+|.......| ..+.++++|+|..|+++..-.
T Consensus 232 ~irive~lt------------------------FqgL~Sl~nlklqrN~I~kL~DG~F-y~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 232 RIRIVEGLT------------------------FQGLPSLQNLKLQRNDISKLDDGAF-YGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred ceeeehhhh------------------------hcCchhhhhhhhhhcCcccccCcce-eeecccceeecccchhhhhhc
Confidence 555443444 4455555555555555544433222 234555555555555544332
Q ss_pred -CccccccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc
Q 048402 245 -DLTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM 320 (677)
Q Consensus 245 -~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 320 (677)
.+++++.|+.|++++|.|...-+.. .++|++|+|++|+++...++.+.. +..|++|.+++|.+......+|.
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH----HHHhhhhcccccchHHHHhhHHH
Confidence 2233445555555554444322221 345555555555555444444333 56666677777766655556666
Q ss_pred cCCCCceecccCccccccCCc---CcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCC
Q 048402 321 SYQNLEILELSNNKFTGKLPN---SLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSR 397 (677)
Q Consensus 321 ~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 397 (677)
++++|++|||++|.+...+.+ .|.++++|+.|.+.+|++..+.-.+|.++++|+.|||.+|.+. ++....|+.+ .
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia-SIq~nAFe~m-~ 440 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA-SIQPNAFEPM-E 440 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce-eecccccccc-h
Confidence 677777777777766644333 3556666666666666666555566666666666666666665 4444444344 5
Q ss_pred ceEEEcCCC
Q 048402 398 MVVLILRSN 406 (677)
Q Consensus 398 L~~L~L~~n 406 (677)
|+.|.+..-
T Consensus 441 Lk~Lv~nSs 449 (873)
T KOG4194|consen 441 LKELVMNSS 449 (873)
T ss_pred hhhhhhccc
Confidence 665555543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.9e-41 Score=315.98 Aligned_cols=473 Identities=26% Similarity=0.364 Sum_probs=290.3
Q ss_pred ccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCc
Q 048402 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIEL 83 (677)
Q Consensus 4 L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L 83 (677)
+..+.+++|.+. .+ .+.+.++..|.+|+++ .+... ..|.+++.+..++.++.++|++. .+|+.+.... ++
T Consensus 47 l~~lils~N~l~-~l-~~dl~nL~~l~vl~~~-~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~-----~l 116 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VL-REDLKNLACLTVLNVH-DNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLI-----SL 116 (565)
T ss_pred hhhhhhccCchh-hc-cHhhhcccceeEEEec-cchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhh-----hh
Confidence 345566666665 33 4556666666666666 33332 45666666666666666666665 3444455555 56
Q ss_pred cEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeec
Q 048402 84 ESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGG 163 (677)
Q Consensus 84 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~ 163 (677)
+.++.++|.+. ..|++++.+..|+.|+..+|+++ ..|+++..+.+|..+++.+|++. .+|+..+. ++.|+++|...
T Consensus 117 ~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNS 192 (565)
T ss_pred hhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccch
Confidence 66666666666 45556666666666666666666 55666666666666666666665 55553443 66666666666
Q ss_pred cccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcccc
Q 048402 164 NKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI 243 (677)
Q Consensus 164 n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 243 (677)
|.+. ..|..++.+.+|+.|++..|++.. .| .|..+..|++++++.|.|... |.+..++++++..||+..|+++..+
T Consensus 193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLDLRdNklke~P 268 (565)
T KOG0472|consen 193 NLLE-TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLDLRDNKLKEVP 268 (565)
T ss_pred hhhh-cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhh-HHHHhcccccceeeeccccccccCc
Confidence 6554 233344444445555555544432 22 344444455555544444333 3333344444444444444444333
Q ss_pred CCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCC
Q 048402 244 TDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQ 323 (677)
Q Consensus 244 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 323 (677)
..+.. +.+|..||+++|.+++..+ .++++ .|+.|-+.+|.+..+- ..+-+..
T Consensus 269 de~cl---------------------LrsL~rLDlSNN~is~Lp~-----sLgnl-hL~~L~leGNPlrTiR-r~ii~~g 320 (565)
T KOG0472|consen 269 DEICL---------------------LRSLERLDLSNNDISSLPY-----SLGNL-HLKFLALEGNPLRTIR-REIISKG 320 (565)
T ss_pred hHHHH---------------------hhhhhhhcccCCccccCCc-----ccccc-eeeehhhcCCchHHHH-HHHHccc
Confidence 33333 3445555666665554322 45556 7888888888776321 1111111
Q ss_pred ---CCceec-------ccCcc---c-ccc-CCc---CcCCCCCccEEECcCCcccccCCccCcCCC---CCCEEecCCCc
Q 048402 324 ---NLEILE-------LSNNK---F-TGK-LPN---SLGSLTSLIWLLLGKNRLSGTIPVSLKNCT---ALESLDVGENE 382 (677)
Q Consensus 324 ---~L~~L~-------L~~n~---l-~~~-~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~---~L~~L~l~~n~ 382 (677)
-|++|. ++.-. - ... .+. ......+.+.|++++-+++ ..|+....-. -....+++.|+
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccch
Confidence 122221 11100 0 001 111 1233557788888888887 4443332222 36788899998
Q ss_pred ccccCChhhhhccCCceE-EEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCC
Q 048402 383 FVGNIPTWTGERFSRMVV-LILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLP 461 (677)
Q Consensus 383 l~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 461 (677)
+. ++|..+. .+..+.+ +.+++|.+. -+|..++.+++|..|++++|.+. .+|..++.
T Consensus 400 L~-elPk~L~-~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~------------------- 456 (565)
T KOG0472|consen 400 LC-ELPKRLV-ELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS------------------- 456 (565)
T ss_pred Hh-hhhhhhH-HHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhh-------------------
Confidence 87 7887665 3444443 555555554 77888888999999999888765 56655544
Q ss_pred CCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCc
Q 048402 462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLE 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 541 (677)
+..|+.||+|.|+|. .+|..+..+..++.+-.++|++....|+.+++|.+|.
T Consensus 457 ---------------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 457 ---------------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred ---------------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 344599999999998 7888888888888888888999866677799999999
Q ss_pred EEECCCCcccccCccccccCCCCCEEEcccCccc
Q 048402 542 SIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575 (677)
Q Consensus 542 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 575 (677)
+|||.+|.+. .+|..++++++|++|++++|+++
T Consensus 509 tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999998 88889999999999999999998
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-39 Score=305.80 Aligned_cols=475 Identities=24% Similarity=0.311 Sum_probs=323.9
Q ss_pred ccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEee
Q 048402 83 LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG 162 (677)
Q Consensus 83 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~ 162 (677)
++.+.+++|.+.. +-+.+.++..|.+|++.+|.+. ..|.+++.+..++.++.++|++. .+|+ .+..+.+++.++.+
T Consensus 47 l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhhhcc
Confidence 5555555555552 2334555555555555555555 45555555555555555555554 5555 45555555555555
Q ss_pred ccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccc
Q 048402 163 GNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ 242 (677)
Q Consensus 163 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 242 (677)
+|.+.. .++.+..+..++.++..+|++. ..|..+..+.++..+++.+|++....+... . ++.|+++|...|.+...
T Consensus 123 ~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~-m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 123 SNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-A-MKRLKHLDCNSNLLETL 198 (565)
T ss_pred ccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-H-HHHHHhcccchhhhhcC
Confidence 555542 3334445555555555555554 456677778888888888888888765544 3 67888999988888888
Q ss_pred cCCccccccccEEEcccCCCCCCCCC-CCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccccc
Q 048402 243 ITDLTKVTQLLFLSVHSNNMSGPLPL-ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321 (677)
Q Consensus 243 ~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 321 (677)
++.+..+.+|..|++..|++...+.. .++.|+++.+..|.+. ..|...+ ..++++..||+.+|++. ..|+.+.-
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~---~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHL---KHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred ChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHh---cccccceeeeccccccc-cCchHHHH
Confidence 88888888888889988888754422 2667888888888775 3333332 24788888888888887 77888888
Q ss_pred CCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcC-----CCCCCE----EecCCCc----ccccCC
Q 048402 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKN-----CTALES----LDVGENE----FVGNIP 388 (677)
Q Consensus 322 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~----L~l~~n~----l~~~~~ 388 (677)
+++|+.||+|+|.|+ ..|..++++ .|+.|-+.+|.+..+-.+.+.+ ++.|+. =.++... -.+..|
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 888888999988888 577788888 8888888888875321111100 011111 0000000 001111
Q ss_pred hhhh---hccCCceEEEcCCCcccccCCccccCCCC---CCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCC
Q 048402 389 TWTG---ERFSRMVVLILRSNNFHGPLPTRLCDLAF---LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPL 462 (677)
Q Consensus 389 ~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 462 (677)
.+.+ ....+.+.|++++-+++ .+|+....... ....+++.|++. ++|+.+..++.+.+.-..+....+
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is---- 425 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS---- 425 (565)
T ss_pred CCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc----
Confidence 1111 12456677888887777 44443332222 677888888886 677766666655433322222211
Q ss_pred CCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcE
Q 048402 463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLES 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 542 (677)
-.+.....+++|..|++++|.+. .+|..++.+..||.||+|.|+|. .+|.....+..++.
T Consensus 426 ------------------fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 426 ------------------FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLET 485 (565)
T ss_pred ------------------cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHH
Confidence 12334456888899999999988 78999999999999999999999 89999999999999
Q ss_pred EECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCCCC
Q 048402 543 IDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLC 598 (677)
Q Consensus 543 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~ 598 (677)
+-.++|++..+.|+.+.++..|.+||+.+|.+....|..+.+++++.+.+.||.+.
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 99999999988888899999999999999999988888899999999999888655
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-37 Score=322.66 Aligned_cols=484 Identities=23% Similarity=0.283 Sum_probs=382.7
Q ss_pred EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccE
Q 048402 6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELES 85 (677)
Q Consensus 6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~ 85 (677)
.+|++.+++. .| |..+..-..+..|++..|-.+... -+++.+.-+|+.||+++|++. ..|..+..+. +|+.
T Consensus 2 ~vd~s~~~l~-~i-p~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~-----~L~~ 72 (1081)
T KOG0618|consen 2 HVDASDEQLE-LI-PEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLS-----HLRQ 72 (1081)
T ss_pred CcccccccCc-cc-chhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHH-----HHhh
Confidence 4678888887 67 666666666999999844333333 344555666999999999877 5677777777 8999
Q ss_pred EEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccc
Q 048402 86 LDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165 (677)
Q Consensus 86 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~ 165 (677)
|+++.|.+. ..|.+..++.+|++|.|.+|.+. ..|.++..+++|++|+++.|.+. .+|. .+..++.+..+..++|.
T Consensus 73 ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl-~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 73 LNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPL-VIEVLTAEEELAASNNE 148 (1081)
T ss_pred cccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCch-hHHhhhHHHHHhhhcch
Confidence 999999998 56788999999999999999988 78999999999999999999996 8887 78899999999999992
Q ss_pred cceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCC
Q 048402 166 LTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITD 245 (677)
Q Consensus 166 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 245 (677)
....... ..++.+++..|.+.+.++..+..++. .|++.+|.+... -...+..|+.+....|++....
T Consensus 149 ~~~~lg~-----~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~----dls~~~~l~~l~c~rn~ls~l~-- 215 (1081)
T KOG0618|consen 149 KIQRLGQ-----TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL----DLSNLANLEVLHCERNQLSELE-- 215 (1081)
T ss_pred hhhhhcc-----ccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh----hhhhccchhhhhhhhcccceEE--
Confidence 2111111 12777788888888888877777766 799999988722 1234678888888888876421
Q ss_pred ccccccccEEEcccCCCCCCCCCC-CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCC
Q 048402 246 LTKVTQLLFLSVHSNNMSGPLPLI-SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN 324 (677)
Q Consensus 246 ~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 324 (677)
...++++.|+.++|.++...+.. ..+|+++++++|++++.. ++++. +.+|+.+...+|.++ .+|..+...++
T Consensus 216 -~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~----~~nle~l~~n~N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 216 -ISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGA----CANLEALNANHNRLV-ALPLRISRITS 288 (1081)
T ss_pred -ecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHh----cccceEecccchhHH-hhHHHHhhhhh
Confidence 22378999999999998655544 568999999999998654 76665 899999999999996 78888888999
Q ss_pred CceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCC-CCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402 325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTA-LESLDVGENEFVGNIPTWTGERFSRMVVLIL 403 (677)
Q Consensus 325 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 403 (677)
|+.|++..|.+. .+|....++++|++|+|..|++....+..|..... |+.|+.+.|++. ..|..-...++.|+.|++
T Consensus 289 L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 289 LVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYL 366 (1081)
T ss_pred HHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHH
Confidence 999999999998 67777888999999999999998433333444443 788888888886 666555556788999999
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCCcCCCCcCc-cccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCc
Q 048402 404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPK-CINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEA 482 (677)
Q Consensus 404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (677)
.+|.++...-+.+.+..+|+.|+|++|++. .+|. ++.++
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kl--------------------------------------- 406 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKL--------------------------------------- 406 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccc-cCCHHHHhch---------------------------------------
Confidence 999999877777888999999999999986 4443 44443
Q ss_pred hhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCC
Q 048402 483 IEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM 562 (677)
Q Consensus 483 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 562 (677)
..|++|+||+|.++ .+|..+..+..|++|..-+|++. ..| .+..++.|+.+|+|.|+++...-..-...+
T Consensus 407 -------e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 407 -------EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSP 476 (1081)
T ss_pred -------HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence 34589999999998 67789999999999999999998 777 788999999999999999865433333448
Q ss_pred CCCEEEcccCcc
Q 048402 563 SLNHLNLSNNKL 574 (677)
Q Consensus 563 ~L~~L~ls~N~l 574 (677)
+|++||+++|..
T Consensus 477 ~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 477 NLKYLDLSGNTR 488 (1081)
T ss_pred ccceeeccCCcc
Confidence 999999999984
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1e-36 Score=317.00 Aligned_cols=482 Identities=26% Similarity=0.329 Sum_probs=378.4
Q ss_pred EEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEE
Q 048402 31 RLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNL 110 (677)
Q Consensus 31 ~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 110 (677)
++|.+ .+.++ .+|..+-.-..+..|+++.|.+-..+-+...... +|+.||+++|++. ..|..+..+.+|+.|
T Consensus 2 ~vd~s-~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v-----~L~~l~lsnn~~~-~fp~~it~l~~L~~l 73 (1081)
T KOG0618|consen 2 HVDAS-DEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRV-----KLKSLDLSNNQIS-SFPIQITLLSHLRQL 73 (1081)
T ss_pred Ccccc-cccCc-ccchhhccHHHHHhhhccccccccCchHHhhhee-----eeEEeeccccccc-cCCchhhhHHHHhhc
Confidence 35566 44443 5666665555699999999988766666666666 7999999999998 678889999999999
Q ss_pred ECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccC
Q 048402 111 DLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYV 190 (677)
Q Consensus 111 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 190 (677)
+++.|.+. ..|.+..++.+|+++.|.+|.++ .+|. .+..+.+|+.|++++|.+.. .+..+..+..++.+..++|..
T Consensus 74 n~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~ 149 (1081)
T KOG0618|consen 74 NLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEK 149 (1081)
T ss_pred ccchhhHh-hCchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchh
Confidence 99999998 67889999999999999999997 8887 79999999999999999874 344455566677777777722
Q ss_pred CCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCcc-EEECCCccCccccCCccccccccEEEcccCCCCCCCCCC
Q 048402 191 GSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLK-FLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLI 269 (677)
Q Consensus 191 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 269 (677)
.... +... ++.+++..|.+.+.++.+. ..++ .++|++|.+. ..+...+.+|+.+....|++.... ..
T Consensus 150 ~~~l----g~~~-ik~~~l~~n~l~~~~~~~i----~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~-~~ 217 (1081)
T KOG0618|consen 150 IQRL----GQTS-IKKLDLRLNVLGGSFLIDI----YNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQLSELE-IS 217 (1081)
T ss_pred hhhh----cccc-chhhhhhhhhcccchhcch----hhhheeeecccchhh--hhhhhhccchhhhhhhhcccceEE-ec
Confidence 2222 2222 7788888887776655444 2333 5999999887 445566678888888888765321 22
Q ss_pred CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCc
Q 048402 270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL 349 (677)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 349 (677)
-++++.|+.++|.++...+... ..+|+.+++++|+++ .+|++.+.+.+|+.++..+|+++ .+|..+....+|
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p~------p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHPV------PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSL 289 (1081)
T ss_pred CcchheeeeccCcceeeccccc------cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhH
Confidence 4689999999999884433322 578999999999998 56699999999999999999997 788888889999
Q ss_pred cEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCC-ceEEEcCCCcccccCCccccCCCCCCEEeCC
Q 048402 350 IWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSR-MVVLILRSNNFHGPLPTRLCDLAFLQILDLA 428 (677)
Q Consensus 350 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 428 (677)
+.|.+..|.+. -+|....++++|++|++..|.+. .+|...+..... |+.|..+.|.+.......=...+.|+.|++.
T Consensus 290 ~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 290 VSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 99999999998 56667788999999999999997 778755543433 7788888888873322222345678999999
Q ss_pred CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCc
Q 048402 429 DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL 508 (677)
Q Consensus 429 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 508 (677)
+|.++...-+.+ .+...|+.|+|++|++......
T Consensus 368 nN~Ltd~c~p~l----------------------------------------------~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 368 NNHLTDSCFPVL----------------------------------------------VNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred cCcccccchhhh----------------------------------------------ccccceeeeeecccccccCCHH
Confidence 998875443333 3455669999999999966667
Q ss_pred ccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccccc-CCCCCCCCCc
Q 048402 509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGK-IPSSTQLQSF 587 (677)
Q Consensus 509 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~-~p~~~~~~~l 587 (677)
.+.++..|++|+||||+++ .+|+.+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+++.. +|.....+.|
T Consensus 402 ~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~L 478 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNL 478 (1081)
T ss_pred HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCccc
Confidence 7999999999999999999 88999999999999999999999 888 799999999999999999754 4544333788
Q ss_pred CcccccCC
Q 048402 588 DASSFTGN 595 (677)
Q Consensus 588 ~~~~~~~n 595 (677)
+.++++||
T Consensus 479 kyLdlSGN 486 (1081)
T KOG0618|consen 479 KYLDLSGN 486 (1081)
T ss_pred ceeeccCC
Confidence 89999988
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-33 Score=281.26 Aligned_cols=366 Identities=22% Similarity=0.365 Sum_probs=221.9
Q ss_pred CCCCCEEEccCCcCC-cccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCC
Q 048402 51 LCNLKSINLRGVHLS-QEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS 129 (677)
Q Consensus 51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 129 (677)
++..|-.|+++|.++ +..|.....++ .++-|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt-----~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMT-----QMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLP 78 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhh-----heeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccch
Confidence 445566677777776 34666666666 6666766666666 46667777777777777777766 4455666777
Q ss_pred CCCEEEccccccc-cccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEE
Q 048402 130 NLRVLQIYNNKLN-GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLN 208 (677)
Q Consensus 130 ~L~~L~L~~n~i~-~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 208 (677)
.|+.++++.|++. .-+|. .+..+..|..|||++|++. ..|..+..-+++-.|+
T Consensus 79 ~LRsv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~-------------------------EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLR-------------------------EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred hhHHHhhhccccccCCCCc-hhcccccceeeecchhhhh-------------------------hcchhhhhhcCcEEEE
Confidence 7777777777664 23444 4556777777777777665 4566666677777888
Q ss_pred ccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCC
Q 048402 209 LLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVS 288 (677)
Q Consensus 209 l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 288 (677)
+++|+|..+ |..++-+++.|-.||||+|++...+|....+..|+.|++++|.+.. -
T Consensus 133 LS~N~IetI-Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h---------------------f-- 188 (1255)
T KOG0444|consen 133 LSYNNIETI-PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH---------------------F-- 188 (1255)
T ss_pred cccCccccC-CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH---------------------H--
Confidence 888887766 5555566777888888888887766666555555555554443321 0
Q ss_pred hhHhhccCCCCCcCeEecCCCCCc-ccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccC
Q 048402 289 HYLCYRINEPKSLIGLKLKDNSLQ-GEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL 367 (677)
Q Consensus 289 ~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 367 (677)
--..+..+++|+.|.+++.+=+ ..+|.++..+.+|..+|+|.|.+. ..|+++..+++|+.|+|++|+++
T Consensus 189 --QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it------- 258 (1255)
T KOG0444|consen 189 --QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT------- 258 (1255)
T ss_pred --HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-------
Confidence 0011222455555666554321 245555566666666666666665 45555555555666655555555
Q ss_pred cCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC-CCcCccccccccC
Q 048402 368 KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF-GTIPKCINNITGM 446 (677)
Q Consensus 368 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~l 446 (677)
.+..... ...+|++|+++.|+++ .+|++++.++.|+.|.+.+|+++ .-+|..++.+..|
T Consensus 259 ------------------eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 259 ------------------ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred ------------------eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 2222222 3456777777777777 67788888888888888888774 1233333333322
Q ss_pred ccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcc
Q 048402 447 VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSF 526 (677)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 526 (677)
+.+..++|.+. ..|+.+..+..|+.|.|+.|++
T Consensus 319 ----------------------------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 319 ----------------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred ----------------------------------------------HHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 44444444444 5555666666666666666665
Q ss_pred eeecccccccCCCCcEEECCCCccc
Q 048402 527 TGRIPESIGAMRSLESIDFSVNQLS 551 (677)
Q Consensus 527 ~~~~p~~~~~l~~L~~L~Ls~N~l~ 551 (677)
- .+|+++.-++.|+.||+..|.-.
T Consensus 352 i-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 352 I-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred e-echhhhhhcCCcceeeccCCcCc
Confidence 5 55666666666666666666554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-33 Score=281.58 Aligned_cols=387 Identities=24% Similarity=0.363 Sum_probs=282.6
Q ss_pred CCcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCc
Q 048402 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVS 80 (677)
Q Consensus 1 ~~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 80 (677)
+|-++-.|+++|.++|.-+|.....++.++.|.|. ...+ ..+|..++.+.+|++|.+++|++. .+-..+..++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLn-rt~L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp---- 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLN-RTKL-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLP---- 78 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEec-hhhh-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccch----
Confidence 35677889999999876668888899999999996 4443 467899999999999999999876 3445566677
Q ss_pred CCccEEEcccCcCcc-ccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEE
Q 048402 81 IELESLDLRSSSISG-HLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWF 159 (677)
Q Consensus 81 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L 159 (677)
.|+.++++.|++.. -+|..+.++..|+.||||+|.++ ..|..+..-+++-+|+|++|+|. +||...|.+++.|-.|
T Consensus 79 -~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 79 -RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred -hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 89999999988853 36777888999999999999988 77888888899999999999997 8888888888888888
Q ss_pred EeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccC
Q 048402 160 RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQF 239 (677)
Q Consensus 160 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l 239 (677)
||++|++. ..|..+..+.+|++|++++|.+.-..-.. ...+++|+.|.+++.+-
T Consensus 156 DLS~NrLe-------------------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 156 DLSNNRLE-------------------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred ccccchhh-------------------------hcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhcccccc
Confidence 88888876 45666777777788888777653221100 01122333333332221
Q ss_pred ccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccc
Q 048402 240 HGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW 319 (677)
Q Consensus 240 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 319 (677)
+ ...+|. .+..+.+|..++++.|.+. .+|+++
T Consensus 210 T-------------------------------------------l~N~Pt----sld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 210 T-------------------------------------------LDNIPT----SLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred h-------------------------------------------hhcCCC----chhhhhhhhhccccccCCC-cchHHH
Confidence 1 011222 2333788899999999998 899999
Q ss_pred ccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccc-cCChhhhhccCCc
Q 048402 320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG-NIPTWTGERFSRM 398 (677)
Q Consensus 320 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L 398 (677)
-.+++|+.|+||+|+|+ .+....+.-.+|++|+++.|+++ .+|++++.+++|+.|.+.+|++.- -+|+.++ .+..|
T Consensus 242 y~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG-KL~~L 318 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG-KLIQL 318 (1255)
T ss_pred hhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh-hhhhh
Confidence 99999999999999999 45555667789999999999998 789999999999999999998752 3555555 45556
Q ss_pred eEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEee
Q 048402 399 VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS 478 (677)
Q Consensus 399 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (677)
+.+..++|.+. .+|+.++.|..|+.|.|++|+
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~Nr----------------------------------------------- 350 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNR----------------------------------------------- 350 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhcccccc-----------------------------------------------
Confidence 66665555554 555555555555555555554
Q ss_pred cCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECC
Q 048402 479 EGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFS 546 (677)
Q Consensus 479 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 546 (677)
+. .+|+.+.-++.|+.||+..|.=....|.--..-++|+.-++.
T Consensus 351 -----------------------Li-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 351 -----------------------LI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred -----------------------ee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 43 678888889999999999998653444322222455544443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=5.4e-28 Score=229.08 Aligned_cols=421 Identities=20% Similarity=0.209 Sum_probs=284.8
Q ss_pred CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccc-cccccccChhhhhCCCCCCEEE
Q 048402 82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYN-NKLNGTLSEIHFSNLTKLSWFR 160 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~l~~~~~~~l~~L~~L~ 160 (677)
.-.+++|..|+|+.+.+.+|+.+++|+.|||++|.|+.+.|++|.++++|..|-+.+ |+|+ .+|...|+++..++.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 678999999999999999999999999999999999999999999999998888877 8898 99999999999999999
Q ss_pred eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCc
Q 048402 161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240 (677)
Q Consensus 161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~ 240 (677)
+.-|++.....++|..++.+..|.+.+|.+.......|..+..++.+.+..|.+...- +++.+... +..+.+.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC------nL~wla~~-~a~~~ie 219 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC------NLPWLADD-LAMNPIE 219 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc------ccchhhhH-Hhhchhh
Confidence 9999999988899999999999999999988777778889999999998888743321 11111110 1111111
Q ss_pred cccCCccccccccEEEcccCCCCCCCCCC-CCCccEE---EccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCC
Q 048402 241 GQITDLTKVTQLLFLSVHSNNMSGPLPLI-SSNLVYL---DLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP 316 (677)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L---~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 316 (677)
..+........+.+.++....+.. ...++.+ ..+.+...+.-|.. .+..+++|++|++++|+++++-+
T Consensus 220 -----tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~---cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 220 -----TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAK---CFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred -----cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHH---HHhhcccceEeccCCCccchhhh
Confidence 001111111111122221111111 0011111 11222222233322 25668999999999999999889
Q ss_pred cccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccC-Chhhhhcc
Q 048402 317 DCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNI-PTWTGERF 395 (677)
Q Consensus 317 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l 395 (677)
.+|.+..++++|.|..|++.......|.++..|+.|+|++|+|+...|.+|..+.+|.+|++-.|++.-.- -.|+.+.+
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL 371 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH
Confidence 99999999999999999998877888999999999999999999999999999999999999988875322 13333222
Q ss_pred CCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC---CcCccccccccCccccccCcccCccCCCCCCCcccccc
Q 048402 396 SRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG---TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTE 472 (677)
Q Consensus 396 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (677)
+.+...+.. . -+.-..++.+++++..+.. .-|++.+-.++- +.+.
T Consensus 372 --------r~~~~~~~~-~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~--------------~cP~-------- 419 (498)
T KOG4237|consen 372 --------RKKSVVGNP-R-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSS--------------PCPP-------- 419 (498)
T ss_pred --------hhCCCCCCC-C-CCCCchhccccchhccccccccCCccccCCCCCC--------------CCCC--------
Confidence 122212111 1 1222345666666665421 112111110000 0000
Q ss_pred eeeEeecCCchhhhhhhccc-cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402 473 KASVVSEGEAIEYDEILNLV-KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551 (677)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 551 (677)
..+-+ ++...|+..++ .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+++|+++
T Consensus 420 ---------------~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 420 ---------------PCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred ---------------CcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence 00001 23344555454 3443332 34567899999998 77776 66788 8999999999
Q ss_pred ccCccccccCCCCCEEEcccC
Q 048402 552 GEIPQSMSNLMSLNHLNLSNN 572 (677)
Q Consensus 552 ~~~p~~l~~l~~L~~L~ls~N 572 (677)
.....+|.++++|.+|.+++|
T Consensus 478 ~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 478 SLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhhcccccchhhhheeEEecC
Confidence 777788999999999999987
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.4e-22 Score=234.91 Aligned_cols=347 Identities=19% Similarity=0.209 Sum_probs=194.2
Q ss_pred hhhcCCCCCCEEEccCCcC------CcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCcccc
Q 048402 46 RSMASLCNLKSINLRGVHL------SQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG 119 (677)
Q Consensus 46 ~~l~~l~~L~~L~l~~n~l------~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 119 (677)
.+|..+++|+.|.+..+.. ...+|..+..++. +|+.|.+.++.+. .+|..| ...+|++|++.+|.+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~----~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP----KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCc----ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence 4456666666666644321 1223444443331 5666666666665 344444 3466666666666665
Q ss_pred CCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhcc
Q 048402 120 PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLH 199 (677)
Q Consensus 120 ~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 199 (677)
.++..+..+++|+.|+++++...+.+|. +..+++|+.|++++|......+..+..+.+|+.|++++|..-..+|..+
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 4555666666666666665543335553 5556666666666654433444444555555555555554434444433
Q ss_pred CCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEcc
Q 048402 200 SQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLS 279 (677)
Q Consensus 200 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~ 279 (677)
++++|+.|++++|......|. ...+|+.|++++|.+... |....+++|+.|.+.++......
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~l-P~~~~l~~L~~L~l~~~~~~~l~------------- 763 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEF-PSNLRLENLDELILCEMKSEKLW------------- 763 (1153)
T ss_pred CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccc-cccccccccccccccccchhhcc-------------
Confidence 455666666666543322221 123555566655555432 22223344444443332110000
Q ss_pred CCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcc
Q 048402 280 NNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRL 359 (677)
Q Consensus 280 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 359 (677)
+.+....+. ....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|+.|++++|..
T Consensus 764 -~~~~~l~~~----~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 764 -ERVQPLTPL----MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR 837 (1153)
T ss_pred -ccccccchh----hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence 000000000 11124677777887777666777777788888888887775444566554 577788888887755
Q ss_pred cccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCc
Q 048402 360 SGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNN 431 (677)
Q Consensus 360 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 431 (677)
...+|.. .++|+.|++++|.+. .+|.++. .+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 838 L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 838 LRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 4444432 357778888888776 6777665 67788888888765544566667777788888887774
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=6.6e-22 Score=231.32 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=55.5
Q ss_pred hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402 489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN 568 (677)
Q Consensus 489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 568 (677)
+++|+.|++++|.....+|.. .++|++|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.++
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 455677777776554444432 356777778887777 6677777777888888877544345666677777777777
Q ss_pred cccCc
Q 048402 569 LSNNK 573 (677)
Q Consensus 569 ls~N~ 573 (677)
+++|.
T Consensus 900 l~~C~ 904 (1153)
T PLN03210 900 FSDCG 904 (1153)
T ss_pred cCCCc
Confidence 77774
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=9.7e-25 Score=207.14 Aligned_cols=300 Identities=18% Similarity=0.192 Sum_probs=181.6
Q ss_pred CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcC-CcccccCCccCcCCCCCCEEe
Q 048402 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGK-NRLSGTIPVSLKNCTALESLD 377 (677)
Q Consensus 299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~ 377 (677)
+.-.++++..|+|+.+.+.+|+.+++|+.||||+|.|+.+.|++|.++++|.+|.+.+ |+|+...-..|.++.+|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3445556666666655555666666666666666666666666666666655555554 566544445566666666666
Q ss_pred cCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC------------CcCcccccccc
Q 048402 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG------------TIPKCINNITG 445 (677)
Q Consensus 378 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------------~~p~~~~~l~~ 445 (677)
+.-|++. -++...+..++++..|.+.+|.+...-...|..+.+++.+.+..|++.. ..|..++...-
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 6666655 4455555556666666666666653333355666666666665555210 11111111111
Q ss_pred CccccccCcccCccCCCCCCCc-cccccee---eEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEec
Q 048402 446 MVAANSFTRSSQQYLPLPLDGD-VILTEKA---SVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNF 521 (677)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 521 (677)
.....+......+..+..+... .++.... ......-...-++.+++|+.|++++|.++++-+..|.++..+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1111111111111111110000 0000000 00001111233788999999999999999999999999999999999
Q ss_pred cCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCCCCC
Q 048402 522 SHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCG 599 (677)
Q Consensus 522 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~~ 599 (677)
..|++.......|.++..|++|+|.+|+|+...|.+|..+.+|.+|++-.|++.|.+.-.+.-.+++.....||.-|+
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq 383 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ 383 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence 999999777889999999999999999999999999999999999999999998776544333334333333443343
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.9e-21 Score=210.53 Aligned_cols=261 Identities=27% Similarity=0.321 Sum_probs=153.8
Q ss_pred ccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCC
Q 048402 229 LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD 308 (677)
Q Consensus 229 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 308 (677)
-..|+++.+.++..++.+. ++++.|++.+|+++. +|..+++|++|++++|.++.. |. .+++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsL-P~-------lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSL-PV-------LPPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcc-cC-------cccccceeeccC
Confidence 3445555555553333222 245555555555553 333455666666666666533 21 134566666666
Q ss_pred CCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCC
Q 048402 309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP 388 (677)
Q Consensus 309 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 388 (677)
|.+. .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.. ..+|+.|++++|.+. .+|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccc
Confidence 6665 23322 245666666666666 3343 23566677777776664 2321 234666667777665 455
Q ss_pred hhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcc
Q 048402 389 TWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDV 468 (677)
Q Consensus 389 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 468 (677)
.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+.+ +|..
T Consensus 339 ~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l----------------------------- 380 (788)
T PRK15387 339 TL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL----------------------------- 380 (788)
T ss_pred cc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-----------------------------
Confidence 31 2466777777777763 3432 2456667777776652 3321
Q ss_pred cccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCC
Q 048402 469 ILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVN 548 (677)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 548 (677)
+.+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|... .+|+.|++++|
T Consensus 381 --------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~N 432 (788)
T PRK15387 381 --------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRN 432 (788)
T ss_pred --------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccC
Confidence 1235777888888774 4433 256788888888887 466533 46777888888
Q ss_pred cccccCccccccCCCCCEEEcccCcccccCCC
Q 048402 549 QLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 549 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
+++ .+|..+..+++|+.|++++|++++..|.
T Consensus 433 qLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 433 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 887 6788888888888888888888876554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=2.1e-20 Score=202.59 Aligned_cols=168 Identities=30% Similarity=0.389 Sum_probs=108.2
Q ss_pred cccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecc
Q 048402 251 QLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILEL 330 (677)
Q Consensus 251 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 330 (677)
+|+.|++++|++++. |....+|+.|++++|.+++ +|. + ..+|+.|++++|++++ +|.. ..+|+.|++
T Consensus 303 ~L~~LdLS~N~L~~L-p~lp~~L~~L~Ls~N~L~~-LP~-l------p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~L 369 (788)
T PRK15387 303 GLQELSVSDNQLASL-PALPSELCKLWAYNNQLTS-LPT-L------PSGLQELSVSDNQLAS-LPTL---PSELYKLWA 369 (788)
T ss_pred ccceeECCCCccccC-CCCcccccccccccCcccc-ccc-c------ccccceEecCCCccCC-CCCC---Ccccceehh
Confidence 444444444444432 2233455666666666653 221 0 2457777777777763 3432 246677777
Q ss_pred cCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccc
Q 048402 331 SNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG 410 (677)
Q Consensus 331 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 410 (677)
++|++.. +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|+++
T Consensus 370 s~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt- 435 (788)
T PRK15387 370 YNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT- 435 (788)
T ss_pred hcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-
Confidence 7777773 5542 2467888888888874 4432 357888888888887 56653 346788888888887
Q ss_pred cCCccccCCCCCCEEeCCCCcCCCCcCcccccccc
Q 048402 411 PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITG 445 (677)
Q Consensus 411 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 445 (677)
.+|..+..+++|+.+++++|++++..|..+..+.+
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 470 (788)
T ss_pred ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence 67888888888999999999888877776644433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=5.4e-19 Score=193.06 Aligned_cols=244 Identities=26% Similarity=0.364 Sum_probs=127.2
Q ss_pred cEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccC
Q 048402 253 LFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSN 332 (677)
Q Consensus 253 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 332 (677)
..|++++++++..+....+.++.|++++|.++.. |..+ .++|+.|++++|.++ .+|..+. .+|+.|++++
T Consensus 181 ~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsL-P~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 181 TELRLKILGLTTIPACIPEQITTLILDNNELKSL-PENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred eEEEeCCCCcCcCCcccccCCcEEEecCCCCCcC-Chhh------ccCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 3344444444332222233455555555555432 2211 234555555555555 3333322 2455566666
Q ss_pred ccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccC
Q 048402 333 NKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPL 412 (677)
Q Consensus 333 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 412 (677)
|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|+++. +
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-C
Confidence 6555 3444332 35666666666655 3343332 35666666666665 3443322 355666666666653 3
Q ss_pred CccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccc
Q 048402 413 PTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLV 492 (677)
Q Consensus 413 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 492 (677)
|..+ .++|+.|++++|.+++ +|..+ +++|
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l------------------------------------------------~~sL 348 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASL------------------------------------------------PPEL 348 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhh------------------------------------------------cCcc
Confidence 3322 2456666666666542 33211 1345
Q ss_pred cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccc----cCCCCCEEE
Q 048402 493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMS----NLMSLNHLN 568 (677)
Q Consensus 493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~~L~~L~ 568 (677)
+.|++++|+++ .+|..+. ++|++|++++|+++ .+|+.+. .+|+.|++++|+++ .+|..+. .++.+..++
T Consensus 349 ~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 349 QVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred cEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence 66777777666 3444442 46777777777776 4555444 35777777777776 4454432 346677777
Q ss_pred cccCccc
Q 048402 569 LSNNKLT 575 (677)
Q Consensus 569 ls~N~l~ 575 (677)
+.+|+++
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 7777765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=7.7e-19 Score=191.86 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=6.1
Q ss_pred CccEEECCCccCc
Q 048402 228 QLKFLDLGLNQFH 240 (677)
Q Consensus 228 ~L~~L~Ls~n~l~ 240 (677)
.++.|++++|.++
T Consensus 200 ~L~~L~Ls~N~Lt 212 (754)
T PRK15370 200 QITTLILDNNELK 212 (754)
T ss_pred CCcEEEecCCCCC
Confidence 3444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=2e-19 Score=183.32 Aligned_cols=162 Identities=27% Similarity=0.222 Sum_probs=71.4
Q ss_pred CccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcc------cCCcccccCCCCceecccCccccccCCcCcCC
Q 048402 272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG------EIPDCWMSYQNLEILELSNNKFTGKLPNSLGS 345 (677)
Q Consensus 272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 345 (677)
+|++++++++.++......++..+...+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 345555555544432222333333344555555555554441 12223444555555555555554333333332
Q ss_pred CCC---ccEEECcCCcccc----cCCccCcCC-CCCCEEecCCCcccccCChhh---hhccCCceEEEcCCCccccc---
Q 048402 346 LTS---LIWLLLGKNRLSG----TIPVSLKNC-TALESLDVGENEFVGNIPTWT---GERFSRMVVLILRSNNFHGP--- 411 (677)
Q Consensus 346 l~~---L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~--- 411 (677)
+.. |+.|++++|++++ .+...+..+ ++|+.|++++|.+++.....+ +..++.|++|++++|.+++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 222 5555555555542 111223333 555555555555542211111 11234555555555555421
Q ss_pred -CCccccCCCCCCEEeCCCCcCC
Q 048402 412 -LPTRLCDLAFLQILDLADNNLF 433 (677)
Q Consensus 412 -~~~~~~~l~~L~~L~Ls~n~l~ 433 (677)
++..+..+++|++|++++|.+.
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccC
Confidence 1222333445555555555543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.7e-18 Score=175.10 Aligned_cols=210 Identities=22% Similarity=0.250 Sum_probs=121.0
Q ss_pred EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCc----cCchhhcCCCCCCEEEccCCcCCc------ccchhhhhc
Q 048402 6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEG----RIPRSMASLCNLKSINLRGVHLSQ------EISEILNIF 75 (677)
Q Consensus 6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~l 75 (677)
.|+|..+.+++.--...+..+++|+.|+++ ++.++. .++..+...+++++++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~-~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLE-GNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeec-CCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 467777777633214455667778888888 655532 245556677778888888877652 233445555
Q ss_pred cccCcCCccEEEcccCcCccccccccCCCCC---CCEEECcCCcccc----CCCcCCCCC-CCCCEEEccccccccccCh
Q 048402 76 SGCVSIELESLDLRSSSISGHLTDQLGQFKN---LDNLDLANNSIVG----PIPQSLGHL-SNLRVLQIYNNKLNGTLSE 147 (677)
Q Consensus 76 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~i~~~l~~ 147 (677)
. +|++|++++|.+....+..+..+.+ |++|++++|.++. .+...+..+ ++|+.|++++|.+++....
T Consensus 81 ~-----~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 81 C-----GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred C-----ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 5 7888888887776555554544444 7888887777652 222334555 7777777777777632111
Q ss_pred ---hhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHH--
Q 048402 148 ---IHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRF-- 222 (677)
Q Consensus 148 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-- 222 (677)
..+..+++|+.|++++|.+.+.... .++..+..+++|++|++++|.+++.....+
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIR--------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHH--------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 1345556677777776665531110 112223344566666666665554332222
Q ss_pred -HhccCCccEEECCCccCcc
Q 048402 223 -LKSAFQLKFLDLGLNQFHG 241 (677)
Q Consensus 223 -~~~~~~L~~L~Ls~n~l~~ 241 (677)
+..+++|++|++++|.+.+
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HhcccCCCCEEecCCCcCch
Confidence 2234556666666666553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=7.7e-19 Score=147.98 Aligned_cols=182 Identities=22% Similarity=0.427 Sum_probs=118.7
Q ss_pred CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEE
Q 048402 346 LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL 425 (677)
Q Consensus 346 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 425 (677)
+..++.|.+++|+++ ..|..++.+.+|+.|++++|++. .+|..+. .++.|+.|++.-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 334444444444444 33334444555555555555554 4444443 4555555555555554 567777777888888
Q ss_pred eCCCCcCCC-CcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccc
Q 048402 426 DLADNNLFG-TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTK 504 (677)
Q Consensus 426 ~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 504 (677)
|+++|++.. .+|..|.. +..|+.|++++|.+.
T Consensus 108 dltynnl~e~~lpgnff~----------------------------------------------m~tlralyl~dndfe- 140 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFY----------------------------------------------MTTLRALYLGDNDFE- 140 (264)
T ss_pred hccccccccccCCcchhH----------------------------------------------HHHHHHHHhcCCCcc-
Confidence 888887752 23333332 334477788888887
Q ss_pred cCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCC---CCCEEEcccCcccccCCC
Q 048402 505 SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM---SLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 505 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ls~N~l~~~~p~ 580 (677)
.+|..++.+++||.|.+.+|.+. ..|..++.++.|++|.+.+|+++ .+|..++++. +=+.+.+.+|++...|.+
T Consensus 141 ~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 141 ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 77888899999999999999988 78888999999999999999998 7777777653 234566777887654443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=3.6e-18 Score=143.94 Aligned_cols=182 Identities=31% Similarity=0.467 Sum_probs=134.6
Q ss_pred CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD 377 (677)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 377 (677)
+..++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..+..+++|+.|+++-|++. +.|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 567788888888888 66777888889999999999888 67888888899999999888887 7888888888899888
Q ss_pred cCCCcccc-cCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCccc
Q 048402 378 VGENEFVG-NIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS 456 (677)
Q Consensus 378 l~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~ 456 (677)
+..|.+.. .+|..+| .+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+.
T Consensus 109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll----------------------- 163 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL----------------------- 163 (264)
T ss_pred ccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-----------------------
Confidence 88887763 3555555 5677777777777776 66666777777777766666553
Q ss_pred CccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccccc
Q 048402 457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA 536 (677)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 536 (677)
.+|..++.++.|++|.+.+|+++ .+|..+++
T Consensus 164 ------------------------------------------------~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 164 ------------------------------------------------SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred ------------------------------------------------hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 56777788888888888888888 66666665
Q ss_pred CCC---CcEEECCCCcccccCcc
Q 048402 537 MRS---LESIDFSVNQLSGEIPQ 556 (677)
Q Consensus 537 l~~---L~~L~Ls~N~l~~~~p~ 556 (677)
+.- =+...+.+|.....+.+
T Consensus 195 l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 195 LDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hhhhhhHHHHhhhhCCCCChHHH
Confidence 422 23444556655433333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1.4e-14 Score=158.27 Aligned_cols=117 Identities=38% Similarity=0.670 Sum_probs=103.4
Q ss_pred cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402 491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570 (677)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 570 (677)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCC--CCCCcCcccccCC-CCCCCCCCCCCC
Q 048402 571 NNKLTGKIPSST--QLQSFDASSFTGN-DLCGAPLPKNCA 607 (677)
Q Consensus 571 ~N~l~~~~p~~~--~~~~l~~~~~~~n-~l~~~~~~~~c~ 607 (677)
+|++.|.+|... .+..+...++.+| .+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 2233445678888 788876555563
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.30 E-value=9e-12 Score=136.39 Aligned_cols=114 Identities=30% Similarity=0.542 Sum_probs=100.7
Q ss_pred CCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccC
Q 048402 421 FLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500 (677)
Q Consensus 421 ~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 500 (677)
.++.|+|++|.+.|.+|..+..+++| +.|+|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L----------------------------------------------~~L~Ls~N 452 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHL----------------------------------------------QSINLSGN 452 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCC----------------------------------------------CEEECCCC
Confidence 36788999999988888777665554 89999999
Q ss_pred cccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccC-CCCCEEEcccCcccccCC
Q 048402 501 NLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL-MSLNHLNLSNNKLTGKIP 579 (677)
Q Consensus 501 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p 579 (677)
.+.+.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+..+ .++..+++++|+..|..|
T Consensus 453 ~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 453 SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999988764 577899999999887666
Q ss_pred C
Q 048402 580 S 580 (677)
Q Consensus 580 ~ 580 (677)
.
T Consensus 533 ~ 533 (623)
T PLN03150 533 G 533 (623)
T ss_pred C
Confidence 4
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=2.2e-13 Score=136.47 Aligned_cols=193 Identities=27% Similarity=0.440 Sum_probs=138.3
Q ss_pred CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL 403 (677)
Q Consensus 324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 403 (677)
--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|.++.++..|..+|++.|+++ .+|..+. .--|+.|.+
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIV 150 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEE
Confidence 3345677777776 56666777777777777777776 66777777788888888888776 6776665 335788888
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCch
Q 048402 404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAI 483 (677)
Q Consensus 404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (677)
++|+++ .+|+.++....|..||.+.|.+. .+|..++.+.+
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s-------------------------------------- 190 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS-------------------------------------- 190 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH--------------------------------------
Confidence 888887 56777777788888888888775 44444444333
Q ss_pred hhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccc---c
Q 048402 484 EYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMS---N 560 (677)
Q Consensus 484 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~ 560 (677)
|+.|.+..|++. .+|+++..| .|..||+|.|+++ .+|-.|.+|+.|++|.|.+|.++ ..|..+. .
T Consensus 191 --------lr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk 258 (722)
T KOG0532|consen 191 --------LRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK 258 (722)
T ss_pred --------HHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc
Confidence 467777777777 566666644 4788888888888 78888888888888888888887 6666553 2
Q ss_pred CCCCCEEEcccCc
Q 048402 561 LMSLNHLNLSNNK 573 (677)
Q Consensus 561 l~~L~~L~ls~N~ 573 (677)
..=.++|+..-++
T Consensus 259 VHIFKyL~~qA~q 271 (722)
T KOG0532|consen 259 VHIFKYLSTQACQ 271 (722)
T ss_pred eeeeeeecchhcc
Confidence 3445677777664
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.7e-11 Score=127.09 Aligned_cols=197 Identities=34% Similarity=0.545 Sum_probs=100.0
Q ss_pred eEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCC-CccEEECcCCcccccCCccCcCCCCCCEEecCCC
Q 048402 303 GLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLT-SLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381 (677)
Q Consensus 303 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 381 (677)
.++...+.+.... ......+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3555555543211 22334455666666666666 3444444442 5666666666665 33334555666666666666
Q ss_pred cccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCC
Q 048402 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLP 461 (677)
Q Consensus 382 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 461 (677)
++. .+|.... ..+.|+.|++++|++. .+|........|+++.+++|
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N------------------------------- 219 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN------------------------------- 219 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC-------------------------------
Confidence 655 4443322 2445555555555554 33333233333444444444
Q ss_pred CCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCc
Q 048402 462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLE 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 541 (677)
.+. ..+..+..+..+..+.+++|++. ..+..++.+++++
T Consensus 220 ---------------------------------------~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~ 258 (394)
T COG4886 220 ---------------------------------------SII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258 (394)
T ss_pred ---------------------------------------cce-ecchhhhhcccccccccCCceee-eccchhccccccc
Confidence 322 23344555555555555555555 3345555556666
Q ss_pred EEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402 542 SIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP 579 (677)
Q Consensus 542 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 579 (677)
+|++++|+++. ++. +..+.+++.|++++|.+....|
T Consensus 259 ~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 259 TLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred eeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 66666666652 222 5555666666666665554443
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=2.6e-12 Score=121.67 Aligned_cols=233 Identities=23% Similarity=0.279 Sum_probs=127.7
Q ss_pred CCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCC---CcccCCc-------ccccCCCCceecccCccccccCC
Q 048402 271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNS---LQGEIPD-------CWMSYQNLEILELSNNKFTGKLP 340 (677)
Q Consensus 271 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~-------~~~~l~~L~~L~L~~n~l~~~~~ 340 (677)
..++++++++|.+...-...++..+...+.|+..++++-- ....+|+ ++..++.|++++||+|-+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4566666777766655555566666666666666666531 1112332 23455667777777776654333
Q ss_pred cC----cCCCCCccEEECcCCcccccCCc-------------cCcCCCCCCEEecCCCcccccCC----hhhhhccCCce
Q 048402 341 NS----LGSLTSLIWLLLGKNRLSGTIPV-------------SLKNCTALESLDVGENEFVGNIP----TWTGERFSRMV 399 (677)
Q Consensus 341 ~~----~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~ 399 (677)
.. +..+..|++|+|.+|.+...-.. ....-++|+++...+|++. ..+ ...++..+.|+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQSHPTLE 188 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHHhccccc
Confidence 32 23456666677766665421111 1223455666666666653 222 11222334444
Q ss_pred EEEcCCCccccc----CCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceee
Q 048402 400 VLILRSNNFHGP----LPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKAS 475 (677)
Q Consensus 400 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (677)
.+.++.|.+... +...+..+++|
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~L----------------------------------------------------- 215 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHL----------------------------------------------------- 215 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcc-----------------------------------------------------
Confidence 444444444311 11233444444
Q ss_pred EeecCCchhhhhhhccccEEEcccCcccc----cCCcccCCCCCCcEEeccCCcceeeccccc-----ccCCCCcEEECC
Q 048402 476 VVSEGEAIEYDEILNLVKETDVSRNNLTK----SIPLEMTNLKATQSLNFSHNSFTGRIPESI-----GAMRSLESIDFS 546 (677)
Q Consensus 476 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls 546 (677)
+.|||.+|-++. .+...+..+++|++|++++|.+...-..+| ...++|+.|.+.
T Consensus 216 -----------------evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~ 278 (382)
T KOG1909|consen 216 -----------------EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELA 278 (382)
T ss_pred -----------------eeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccC
Confidence 444444444432 233456677788888888887764322222 235788888888
Q ss_pred CCccccc----CccccccCCCCCEEEcccCcc
Q 048402 547 VNQLSGE----IPQSMSNLMSLNHLNLSNNKL 574 (677)
Q Consensus 547 ~N~l~~~----~p~~l~~l~~L~~L~ls~N~l 574 (677)
+|.|+.. +...++..+.|..|+|++|.+
T Consensus 279 gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 279 GNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8888642 223355678888999999988
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=9.9e-12 Score=114.92 Aligned_cols=132 Identities=23% Similarity=0.240 Sum_probs=96.0
Q ss_pred cCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCccccccee
Q 048402 395 FSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKA 474 (677)
Q Consensus 395 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (677)
.+.|+.++|++|.++ .+.++..-.|.++.|++++|.+.. +++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~n-------------------------------- 324 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQN-------------------------------- 324 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehh--------------------------------
Confidence 356788888888887 455667777888888888887741 111
Q ss_pred eEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccC
Q 048402 475 SVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEI 554 (677)
Q Consensus 475 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 554 (677)
...+++|+.||||+|.++ .+...-..+.+.+.|.|++|.+... ..++.+-+|..||+++|+|....
T Consensus 325 -----------La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 325 -----------LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred -----------hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHH
Confidence 123566688888888887 3444445567788899999988733 45778888999999999987543
Q ss_pred c-cccccCCCCCEEEcccCcccccC
Q 048402 555 P-QSMSNLMSLNHLNLSNNKLTGKI 578 (677)
Q Consensus 555 p-~~l~~l~~L~~L~ls~N~l~~~~ 578 (677)
. ..++++|.|+.+.+.+||+.+..
T Consensus 391 eV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred HhcccccccHHHHHhhcCCCccccc
Confidence 2 56888999999999999988653
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=5.8e-11 Score=124.56 Aligned_cols=149 Identities=33% Similarity=0.418 Sum_probs=116.5
Q ss_pred cEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCC-CCceecccCccccccCCcCcCCCCCccEE
Q 048402 274 VYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQ-NLEILELSNNKFTGKLPNSLGSLTSLIWL 352 (677)
Q Consensus 274 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 352 (677)
..++...+.+....... ...+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|
T Consensus 96 ~~l~~~~~~~~~~~~~~-----~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L 168 (394)
T COG4886 96 PSLDLNLNRLRSNISEL-----LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168 (394)
T ss_pred ceeeccccccccCchhh-----hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhcccccccc
Confidence 36788888774433322 22578999999999998 5666666664 9999999999999 566678999999999
Q ss_pred ECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 048402 353 LLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432 (677)
Q Consensus 353 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 432 (677)
++++|+++ .+|......+.|+.|++++|.+. .+|..+. ....|+++.+++|... ..+..+..+.++..+.+.+|++
T Consensus 169 ~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 169 DLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred ccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee
Confidence 99999999 55555558899999999999998 8887653 3566999999999654 4556677778888888887766
Q ss_pred C
Q 048402 433 F 433 (677)
Q Consensus 433 ~ 433 (677)
.
T Consensus 245 ~ 245 (394)
T COG4886 245 E 245 (394)
T ss_pred e
Confidence 4
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=1.8e-12 Score=130.14 Aligned_cols=190 Identities=25% Similarity=0.406 Sum_probs=122.0
Q ss_pred eEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCc
Q 048402 303 GLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE 382 (677)
Q Consensus 303 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 382 (677)
..+++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|+.++++.|+++ .+|..++.|+ |+.|-+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 4455555555 45555555555555555555555 45555555666666666666655 4444444432 5556666666
Q ss_pred ccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCC
Q 048402 383 FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPL 462 (677)
Q Consensus 383 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 462 (677)
++ .+|..++ ..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+++..++
T Consensus 155 l~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------------ 212 (722)
T KOG0532|consen 155 LT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------------ 212 (722)
T ss_pred cc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc------------------
Confidence 64 5665555 5566666666666665 55666677777777777777765 3444333221
Q ss_pred CCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccc---ccCCC
Q 048402 463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI---GAMRS 539 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~ 539 (677)
|..||+|+|++. .+|..|..++.|++|-|.+|.+. ..|..+ +...=
T Consensus 213 -----------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHI 261 (722)
T KOG0532|consen 213 -----------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHI 261 (722)
T ss_pred -----------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceee
Confidence 478888888888 79999999999999999999998 666654 33444
Q ss_pred CcEEECCCCc
Q 048402 540 LESIDFSVNQ 549 (677)
Q Consensus 540 L~~L~Ls~N~ 549 (677)
-++|+..-++
T Consensus 262 FKyL~~qA~q 271 (722)
T KOG0532|consen 262 FKYLSTQACQ 271 (722)
T ss_pred eeeecchhcc
Confidence 5678888775
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.5e-11 Score=119.81 Aligned_cols=180 Identities=25% Similarity=0.228 Sum_probs=90.3
Q ss_pred CCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCC---ccccccccEEEcccCCCCCCCC----CCCCC
Q 048402 200 SQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITD---LTKVTQLLFLSVHSNNMSGPLP----LISSN 272 (677)
Q Consensus 200 ~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~~~~L~~L~l~~n~~~~~~~----~~~~~ 272 (677)
++.+|+++.+.++.+...........++.++.|||+.|-+..+.+. ...+++|+.|+++.|++..... ..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3445555555555554433333445555666666666655543221 1223555555555554432211 12456
Q ss_pred ccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCC--cCcCCCCCcc
Q 048402 273 LVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP--NSLGSLTSLI 350 (677)
Q Consensus 273 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~ 350 (677)
|+.|.++.|.++. ..+...+..+|+++.|++..|.....-.....-+..|++|||++|.+.. .+ ...+.++.|+
T Consensus 199 lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 199 LKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN 274 (505)
T ss_pred hheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence 6666666666652 2222223336677777777764222323334455667777777776652 22 3345566666
Q ss_pred EEECcCCcccccCCcc------CcCCCCCCEEecCCCcc
Q 048402 351 WLLLGKNRLSGTIPVS------LKNCTALESLDVGENEF 383 (677)
Q Consensus 351 ~L~l~~n~~~~~~~~~------~~~l~~L~~L~l~~n~l 383 (677)
.|+++.+.+..+--.. ...+++|++|+++.|++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 6666666665331111 12344555555555554
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=1.5e-11 Score=116.69 Aligned_cols=193 Identities=24% Similarity=0.301 Sum_probs=99.1
Q ss_pred cCCCCCCEEecCCCCCCC----ccCchhhcCCCCCCEEEccCC---cCCcccchhhhh----ccccCcCCccEEEcccCc
Q 048402 24 GNLTSISRLDLSLNTGPE----GRIPRSMASLCNLKSINLRGV---HLSQEISEILNI----FSGCVSIELESLDLRSSS 92 (677)
Q Consensus 24 ~~l~~L~~L~Ls~~~~~~----~~~~~~l~~l~~L~~L~l~~n---~l~~~~~~~~~~----l~~~~~~~L~~L~L~~n~ 92 (677)
..+..++.++|| ++.+. ..+...+.+.++|+..+++.- .....+|+.+.. +.+++ +|++||||+|.
T Consensus 27 ~~~~s~~~l~ls-gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~--~L~~ldLSDNA 103 (382)
T KOG1909|consen 27 EPMDSLTKLDLS-GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP--KLQKLDLSDNA 103 (382)
T ss_pred cccCceEEEecc-CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC--ceeEeeccccc
Confidence 345556666666 44333 123344555556666666542 112223333221 11122 56666666666
Q ss_pred Ccccccc----ccCCCCCCCEEECcCCccccCC-------------CcCCCCCCCCCEEEccccccccccC----hhhhh
Q 048402 93 ISGHLTD----QLGQFKNLDNLDLANNSIVGPI-------------PQSLGHLSNLRVLQIYNNKLNGTLS----EIHFS 151 (677)
Q Consensus 93 l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~L~~n~i~~~l~----~~~~~ 151 (677)
+.-..+. -+..+..|++|.|.+|.+...- ......-++|+++....|++. .-+ ...|.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n~ga~~~A~~~~ 182 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-NGGATALAEAFQ 182 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-cccHHHHHHHHH
Confidence 5432222 2345666777777777654111 112344578888888888875 222 12566
Q ss_pred CCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHH---hccCC
Q 048402 152 NLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFL---KSAFQ 228 (677)
Q Consensus 152 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~~~~~ 228 (677)
..+.|+.+.+..|.|..... ......+..+++|+.||+.+|.++......+. ..++.
T Consensus 183 ~~~~leevr~~qN~I~~eG~--------------------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGV--------------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred hccccceEEEecccccCchh--------------------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 77888888888887653211 01223455666666666666666544333222 22334
Q ss_pred ccEEECCCccCc
Q 048402 229 LKFLDLGLNQFH 240 (677)
Q Consensus 229 L~~L~Ls~n~l~ 240 (677)
|+.+++++|.+.
T Consensus 243 L~El~l~dcll~ 254 (382)
T KOG1909|consen 243 LRELNLGDCLLE 254 (382)
T ss_pred heeecccccccc
Confidence 445555554443
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.8e-11 Score=118.01 Aligned_cols=209 Identities=19% Similarity=0.198 Sum_probs=113.7
Q ss_pred cCCCCCCEEEccCCcCCcccc-hhhhhccccCcCCccEEEcccCcCccc--cccccCCCCCCCEEECcCCccccCCCcC-
Q 048402 49 ASLCNLKSINLRGVHLSQEIS-EILNIFSGCVSIELESLDLRSSSISGH--LTDQLGQFKNLDNLDLANNSIVGPIPQS- 124 (677)
Q Consensus 49 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~- 124 (677)
.++++|+.+.|.++....... .....++ +++.|||+.|-+... +......+++|+.|+++.|.+..-....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~-----~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILP-----NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCC-----cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc
Confidence 355666666666665543222 3445555 667777776665543 2233456677777777777665222111
Q ss_pred CCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCC-ChhccCCCC
Q 048402 125 LGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRF-PQWLHSQKH 203 (677)
Q Consensus 125 ~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~ 203 (677)
-..+++|+.|.++.|.++..--......++.|+.|++.+|...........-+..|+.|+|++|.+.... -...+.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 1245677777777777752222224556677777777777533333333444556677777666654322 233566777
Q ss_pred CCEEEccCCCCCCccchHH-----HhccCCccEEECCCccCccc--cCCccccccccEEEcccCCC
Q 048402 204 LQYLNLLNSGMSDLFPIRF-----LKSAFQLKFLDLGLNQFHGQ--ITDLTKVTQLLFLSVHSNNM 262 (677)
Q Consensus 204 L~~L~l~~n~i~~~~~~~~-----~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~L~~L~l~~n~~ 262 (677)
|..|+++.+++.++.-... ...+++|++|+++.|++..+ ...+...++|+.|.+..|.+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 7777777777765422111 23456677777777766422 22233334444444444443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=2.6e-10 Score=101.82 Aligned_cols=129 Identities=24% Similarity=0.296 Sum_probs=45.6
Q ss_pred ccCCCCCCEEecCCCCCCCccCchhhc-CCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccccccc
Q 048402 23 LGNLTSISRLDLSLNTGPEGRIPRSMA-SLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQL 101 (677)
Q Consensus 23 ~~~l~~L~~L~Ls~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~ 101 (677)
+.+..+++.|+|+ ++.++.. +.++ .+.+|+.|++++|.|+.. +.+..++ +|++|++++|.++.. .+.+
T Consensus 15 ~~n~~~~~~L~L~-~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~-----~L~~L~L~~N~I~~i-~~~l 83 (175)
T PF14580_consen 15 YNNPVKLRELNLR-GNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLP-----RLKTLDLSNNRISSI-SEGL 83 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----T-----T--EEE--SS---S--CHHH
T ss_pred ccccccccccccc-ccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChh-----hhhhcccCCCCCCcc-ccch
Confidence 4456677888887 5555432 2344 467788888888887743 2355566 788888888888754 3333
Q ss_pred -CCCCCCCEEECcCCccccCC-CcCCCCCCCCCEEEccccccccccC--hhhhhCCCCCCEEEee
Q 048402 102 -GQFKNLDNLDLANNSIVGPI-PQSLGHLSNLRVLQIYNNKLNGTLS--EIHFSNLTKLSWFRVG 162 (677)
Q Consensus 102 -~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~l~--~~~~~~l~~L~~L~l~ 162 (677)
..+++|++|++++|.|.... -..+..+++|++|++.+|.+...-. ...+..+++|+.||-.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 35778888888888876321 2345677888888888888763211 1256778888888743
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=6e-11 Score=109.83 Aligned_cols=201 Identities=22% Similarity=0.311 Sum_probs=109.3
Q ss_pred ccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcc---cchhhhhccccCcCCccEEEccc-CcCccc
Q 048402 21 EALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQE---ISEILNIFSGCVSIELESLDLRS-SSISGH 96 (677)
Q Consensus 21 ~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~~~~~~L~~L~L~~-n~l~~~ 96 (677)
-.+.-+++|..+.+| .+.-. .+-+--..-+.|+++.+.+..++.. .|.. .+....-+. .-.+|.
T Consensus 208 f~l~~f~~l~~~~~s-~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~----------~~~D~~~~E~~t~~G~ 275 (490)
T KOG1259|consen 208 FNLNAFRNLKTLKFS-ALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPET----------ILADPSGSEPSTSNGS 275 (490)
T ss_pred cchHHhhhhheeeee-ccchh-heeceeecCchhheeeeecccccccccccchh----------hhcCccCCCCCccCCc
Confidence 345567888888888 43222 1111122336788888877655422 1211 111111111 111233
Q ss_pred cccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCC
Q 048402 97 LTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIP 176 (677)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 176 (677)
....+.....|+++||++|.|+ .+.++..-.++++.|+++.|.+. .+.. ++.+++|+.||+++|.++
T Consensus 276 ~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls--------- 342 (490)
T KOG1259|consen 276 ALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLA--------- 342 (490)
T ss_pred eEEecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh--hhhcccceEeecccchhH---------
Confidence 3334445566777777777776 45566666777777777777775 4443 666777777777777665
Q ss_pred CcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccc--cCCccccccccE
Q 048402 177 PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ--ITDLTKVTQLLF 254 (677)
Q Consensus 177 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~L~~ 254 (677)
.+..|-.++-+++.|.++.|.+.+... ...+.+|..||+++|+|... ...+..+|.|+.
T Consensus 343 ----------------~~~Gwh~KLGNIKtL~La~N~iE~LSG---L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 343 ----------------ECVGWHLKLGNIKTLKLAQNKIETLSG---LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET 403 (490)
T ss_pred ----------------hhhhhHhhhcCEeeeehhhhhHhhhhh---hHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence 222333445556666666665544322 12244566666666666532 334455566666
Q ss_pred EEcccCCCCCC
Q 048402 255 LSVHSNNMSGP 265 (677)
Q Consensus 255 L~l~~n~~~~~ 265 (677)
+.+.+|.+.+.
T Consensus 404 l~L~~NPl~~~ 414 (490)
T KOG1259|consen 404 LRLTGNPLAGS 414 (490)
T ss_pred HhhcCCCcccc
Confidence 66666666543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=6.4e-10 Score=99.27 Aligned_cols=125 Identities=30% Similarity=0.340 Sum_probs=41.2
Q ss_pred CccEEEcccCcCccccccccC-CCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEE
Q 048402 82 ELESLDLRSSSISGHLTDQLG-QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR 160 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~ 160 (677)
++++|+|++|.|+.+ +.++ .+.+|+.|++++|.|+.. +.+..+++|++|++++|.|+ .+++.....+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 467777777777632 2344 466777777777777643 35667777777777777776 56542234577777777
Q ss_pred eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCcc--chHHHhccCCccEEEC
Q 048402 161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLF--PIRFLKSAFQLKFLDL 234 (677)
Q Consensus 161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~L~~L~L 234 (677)
+++|.+.... .-..++.+++|++|++.+|.++... ...+...+|+|+.||-
T Consensus 95 L~~N~I~~l~-----------------------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLN-----------------------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCC-----------------------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChH-----------------------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777765321 1133455666666666666665432 1223445666666663
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=6.4e-10 Score=81.45 Aligned_cols=60 Identities=40% Similarity=0.574 Sum_probs=35.9
Q ss_pred CCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcc
Q 048402 515 ATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKL 574 (677)
Q Consensus 515 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 574 (677)
+|++|++++|+++...++.|.++++|++|++++|.++...|++|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666644445566666666666666666655555666666666666666653
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1.3e-09 Score=79.78 Aligned_cols=61 Identities=30% Similarity=0.452 Sum_probs=57.2
Q ss_pred ccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcc
Q 048402 490 NLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQL 550 (677)
Q Consensus 490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 550 (677)
|+|++|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999988888999999999999999999988888999999999999999986
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=2.3e-09 Score=120.07 Aligned_cols=150 Identities=27% Similarity=0.333 Sum_probs=91.4
Q ss_pred ccEEEccCCCCceecCCccccCCCCCCEEecCCCCC-CCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCC
Q 048402 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTG-PEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIE 82 (677)
Q Consensus 4 L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 82 (677)
.+...+.+|.+. .+ +.+ ..+++|++|-+..+.. +....+..|..++.|++|||++|.=-+.+|..++.+- +
T Consensus 525 ~rr~s~~~~~~~-~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-----~ 596 (889)
T KOG4658|consen 525 VRRMSLMNNKIE-HI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-----H 596 (889)
T ss_pred eeEEEEeccchh-hc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh-----h
Confidence 355555566554 33 222 2455677777763321 3333344567777888888877665566777777777 7
Q ss_pred ccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccc-cccChhhhhCCCCCCEEEe
Q 048402 83 LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN-GTLSEIHFSNLTKLSWFRV 161 (677)
Q Consensus 83 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~l~~~~~~~l~~L~~L~l 161 (677)
|++|++++..++ .+|..+.+++.|.+|++..+.....+|.....+++|++|.+...... +...-..+.++.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 788888777777 56777777777888887777655455666666777887777655421 1111123445555555554
Q ss_pred e
Q 048402 162 G 162 (677)
Q Consensus 162 ~ 162 (677)
.
T Consensus 676 ~ 676 (889)
T KOG4658|consen 676 T 676 (889)
T ss_pred e
Confidence 3
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=3.4e-09 Score=118.73 Aligned_cols=131 Identities=24% Similarity=0.333 Sum_probs=87.8
Q ss_pred CCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCc--CCcccchhhhhccccCcCCccEEEcccCcCccccccccC
Q 048402 25 NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH--LSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLG 102 (677)
Q Consensus 25 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~ 102 (677)
.....++..+- ++.+. .++.. ..+++|++|-+..|. +.....++|..++ .|++|||++|.--+.+|+.++
T Consensus 521 ~~~~~rr~s~~-~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~-----~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 521 SWNSVRRMSLM-NNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLP-----LLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred chhheeEEEEe-ccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCc-----ceEEEECCCCCccCcCChHHh
Confidence 44566666665 33322 22222 233468888777775 4545555677777 788888887766567788888
Q ss_pred CCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccc
Q 048402 103 QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165 (677)
Q Consensus 103 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~ 165 (677)
.+-+|++|+++.+.+. .+|..++++..|.+|++..+.-...++. ....+.+|++|.+....
T Consensus 593 ~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 8888888888888877 6788888888888888877765534433 55567788887776543
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=4.5e-10 Score=117.82 Aligned_cols=223 Identities=26% Similarity=0.223 Sum_probs=103.7
Q ss_pred cCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCc
Q 048402 101 LGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL 180 (677)
Q Consensus 101 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 180 (677)
+..+++|+.|++..|.|..+ ...+..+++|++|++++|.|+ .+.. +..++.|+.|++++|.+... ..+..+..|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc--hhhccchhhheeccCcchhc--cCCccchhh
Confidence 33444444444444444421 111344444444444444443 2221 33333444444444444322 112224444
Q ss_pred cEEEeecccCCCCCC-hhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccc--cccEEEc
Q 048402 181 VALGFHNCYVGSRFP-QWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVT--QLLFLSV 257 (677)
Q Consensus 181 ~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~--~L~~L~l 257 (677)
+.+++++|.+...-+ . ...+.+++.+.+.+|.+......... ..+..+++..|.++.. ....... +|+.+++
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~---~~l~~~~l~~n~i~~~-~~l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLL---KKLVLLSLLDNKISKL-EGLNELVMLHLRELYL 239 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHH---HHHHHhhcccccceec-cCcccchhHHHHHHhc
Confidence 444444444443322 1 34556666666666666554333222 2333335555555422 2222222 2666667
Q ss_pred ccCCCCCC--CCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCccc---CCcc-cccCCCCceeccc
Q 048402 258 HSNNMSGP--LPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE---IPDC-WMSYQNLEILELS 331 (677)
Q Consensus 258 ~~n~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~-~~~l~~L~~L~L~ 331 (677)
++|.+... ....+..+..+++.+|++..... +...+.+..+....+.+... .... ....+.++...+.
T Consensus 240 ~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (414)
T KOG0531|consen 240 SGNRISRSPEGLENLKNLPVLDLSSNRISNLEG------LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLE 313 (414)
T ss_pred ccCccccccccccccccccccchhhcccccccc------ccccchHHHhccCcchhcchhhhhccccccccccccccccc
Confidence 77666643 23335667777777776653321 11234444555555554421 1111 3456677778888
Q ss_pred CccccccCC
Q 048402 332 NNKFTGKLP 340 (677)
Q Consensus 332 ~n~l~~~~~ 340 (677)
.|.+....+
T Consensus 314 ~~~~~~~~~ 322 (414)
T KOG0531|consen 314 LNPIRKISS 322 (414)
T ss_pred cCccccccc
Confidence 777664443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.4e-09 Score=114.05 Aligned_cols=246 Identities=26% Similarity=0.246 Sum_probs=134.1
Q ss_pred CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCc
Q 048402 270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL 349 (677)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 349 (677)
+..++.+.+..|.+.. ....+..+++++.+++.+|.+... ...+..+++|++|++++|.|+...+ +..++.|
T Consensus 71 l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L 142 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLL 142 (414)
T ss_pred hHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccch
Confidence 3455555555555542 111233356666666666666532 2224556666666666666663322 4445556
Q ss_pred cEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCC
Q 048402 350 IWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLAD 429 (677)
Q Consensus 350 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 429 (677)
+.|++.+|.++.. ..+..++.|+.+++++|++. .+.......+.+++.+.+.+|.+... ..+..+..+..+++..
T Consensus 143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLD 217 (414)
T ss_pred hhheeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhccc
Confidence 6666666666532 23444566666666666655 22220012455555666666655422 2222233333345555
Q ss_pred CcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhc--cccEEEcccCcccccCC
Q 048402 430 NNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILN--LVKETDVSRNNLTKSIP 507 (677)
Q Consensus 430 n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~ 507 (677)
|.++..-+. ..+. .|+.+++++|++. ..+
T Consensus 218 n~i~~~~~l------------------------------------------------~~~~~~~L~~l~l~~n~i~-~~~ 248 (414)
T KOG0531|consen 218 NKISKLEGL------------------------------------------------NELVMLHLRELYLSGNRIS-RSP 248 (414)
T ss_pred ccceeccCc------------------------------------------------ccchhHHHHHHhcccCccc-ccc
Confidence 544311000 0011 3678888888887 343
Q ss_pred cccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccccc---Cccc-cccCCCCCEEEcccCcccccCC
Q 048402 508 LEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGE---IPQS-MSNLMSLNHLNLSNNKLTGKIP 579 (677)
Q Consensus 508 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~~~~p 579 (677)
..+..+..+..|++++|++... ..+.....+..+....|.+... .... ....+.++.+.+.+|+.....+
T Consensus 249 ~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 249 EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 5677788888888888887743 3455667777777777776522 1121 4456778888888888765443
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=1.3e-09 Score=112.79 Aligned_cols=182 Identities=27% Similarity=0.274 Sum_probs=121.8
Q ss_pred CcCcCCCCCccEEECcCCcccccCCccCcCC-CCCCEEecCCC--ccc-------ccCChhhhhccCCceEEEcCCCccc
Q 048402 340 PNSLGSLTSLIWLLLGKNRLSGTIPVSLKNC-TALESLDVGEN--EFV-------GNIPTWTGERFSRMVVLILRSNNFH 409 (677)
Q Consensus 340 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n--~l~-------~~~~~~~~~~l~~L~~L~L~~n~l~ 409 (677)
|-.+..+.+|+.|.+.++.+... ..+..+ .+|+.|...+- .+. |.+.... ....|.+.+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHH
Confidence 55567788999999999988631 111111 24444443321 010 1111110 1235667777888887
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhh
Q 048402 410 GPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEIL 489 (677)
Q Consensus 410 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 489 (677)
....++.-++.++.|+|++|++.. ......+
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~------------------------------------------------v~~Lr~l 208 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTK------------------------------------------------VDNLRRL 208 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhh------------------------------------------------hHHHHhc
Confidence 566778888899999999998751 1123346
Q ss_pred ccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCc-cccccCCCCCEEE
Q 048402 490 NLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIP-QSMSNLMSLNHLN 568 (677)
Q Consensus 490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ 568 (677)
+.|++|||++|.+.....-...++. |+.|++++|.++.. ..+.+|.+|+.||+++|-|++.-. .-+..|.+|+.|+
T Consensus 209 ~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 209 PKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred ccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence 7779999999999854444445555 99999999998843 457889999999999999875422 2245667899999
Q ss_pred cccCccccc
Q 048402 569 LSNNKLTGK 577 (677)
Q Consensus 569 ls~N~l~~~ 577 (677)
|.+||+.|.
T Consensus 286 LeGNPl~c~ 294 (1096)
T KOG1859|consen 286 LEGNPLCCA 294 (1096)
T ss_pred hcCCccccC
Confidence 999999764
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=1.4e-09 Score=112.59 Aligned_cols=183 Identities=23% Similarity=0.238 Sum_probs=115.5
Q ss_pred chhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCc---cccccc---cCC---CCCCCEEECcCC
Q 048402 45 PRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSIS---GHLTDQ---LGQ---FKNLDNLDLANN 115 (677)
Q Consensus 45 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~---~~~~~~---~~~---l~~L~~L~L~~n 115 (677)
|-.+..++.||+|.+.++.+.. ...+..+.. .|++|.-++ .++ ..+... +.+ ...|.+.+.++|
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~----qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN 174 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRH----QLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYN 174 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHH----hhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchh
Confidence 5677888899999999887753 111111110 344442221 111 001000 111 124667777777
Q ss_pred ccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCC
Q 048402 116 SIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFP 195 (677)
Q Consensus 116 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 195 (677)
.+. .+..++.-++.|+.|+|++|+++ ... .+..+++|++||+++|.+.....-....+. |..|.+.+|.+...
T Consensus 175 ~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-- 247 (1096)
T KOG1859|consen 175 RLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-- 247 (1096)
T ss_pred hHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--
Confidence 776 56667777778888888888876 333 567778888888888887765554445554 77888888776543
Q ss_pred hhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402 196 QWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG 241 (677)
Q Consensus 196 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 241 (677)
..+.++++|+.||+++|-+.+.....+...+..|+.|+|.+|.+..
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 3466788888888888877765444444556678888888887753
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=5.1e-08 Score=90.72 Aligned_cols=207 Identities=23% Similarity=0.233 Sum_probs=127.5
Q ss_pred CCCEEEccCCcCCcccc-hhhh-hccccCcCCccEEEcccCcCccc--cccccCCCCCCCEEECcCCccccCCCcCC-CC
Q 048402 53 NLKSINLRGVHLSQEIS-EILN-IFSGCVSIELESLDLRSSSISGH--LTDQLGQFKNLDNLDLANNSIVGPIPQSL-GH 127 (677)
Q Consensus 53 ~L~~L~l~~n~l~~~~~-~~~~-~l~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~ 127 (677)
-+..|-+.++.|..... ..++ .+. .++++||.+|.++.. +...+.++|.|++|+++.|.+...+ +.+ ..
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~-----~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p 119 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVT-----DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLP 119 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhh-----hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCccc
Confidence 34455555666543322 1222 344 788899999988743 4455678899999999999887332 233 45
Q ss_pred CCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCC--CCC-CCcCccEEEeecccCCC--CCChhccCCC
Q 048402 128 LSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRH--DWI-PPFQLVALGFHNCYVGS--RFPQWLHSQK 202 (677)
Q Consensus 128 l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~-~~~~L~~L~l~~n~~~~--~~~~~~~~l~ 202 (677)
+.+|++|.|.+..+.-.-....+..++.++.|+++.|.+.....+ ... ..+.+..+.+..|...- .....-.-++
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 678899998888776433344677888888999988855432211 111 12244555554443210 0011122356
Q ss_pred CCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccc--cCCccccccccEEEcccCCCCCC
Q 048402 203 HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ--ITDLTKVTQLLFLSVHSNNMSGP 265 (677)
Q Consensus 203 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~~L~~L~l~~n~~~~~ 265 (677)
++..+.+..|.+.......-+..++.+..|+|+.+++..+ +..+.++++|..|.++++.+...
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 7777888888777665555555567777888888887654 34566667777777777776543
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=6.4e-09 Score=96.65 Aligned_cols=180 Identities=19% Similarity=0.119 Sum_probs=106.4
Q ss_pred CCceecccCccccc-cCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCC-cccccCChhhhhccCCceEE
Q 048402 324 NLEILELSNNKFTG-KLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN-EFVGNIPTWTGERFSRMVVL 401 (677)
Q Consensus 324 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 401 (677)
.|+.+||++..|+. ..-..+..|.+|+.|.+.++++...+...++.-.+|+.|+++.+ .++..--.-++..+++|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57778887776662 22333556777888888888777666666777778888888776 34433334455567777777
Q ss_pred EcCCCcccccCCcc-cc-CCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeec
Q 048402 402 ILRSNNFHGPLPTR-LC-DLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSE 479 (677)
Q Consensus 402 ~L~~n~l~~~~~~~-~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (677)
+++.|.+....... +. --++|+.|+++++.-.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------------------------------- 299 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------------------------------- 299 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh----------------------------------------------
Confidence 77777665322111 11 1135566666655310
Q ss_pred CCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcc-eeecccccccCCCCcEEECCCCcccccCcccc
Q 048402 480 GEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSF-TGRIPESIGAMRSLESIDFSVNQLSGEIPQSM 558 (677)
Q Consensus 480 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 558 (677)
| ....+..-...+++|.+||||+|.. +...-..|.+++.|++|.++.|.. ++|..+
T Consensus 300 ---------------l------~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~ 356 (419)
T KOG2120|consen 300 ---------------L------QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETL 356 (419)
T ss_pred ---------------h------hhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHe
Confidence 0 0001111224456667777776543 222223456778888888888875 456554
Q ss_pred ---ccCCCCCEEEcccC
Q 048402 559 ---SNLMSLNHLNLSNN 572 (677)
Q Consensus 559 ---~~l~~L~~L~ls~N 572 (677)
...|+|.+||+-++
T Consensus 357 ~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccCcceEEEEeccc
Confidence 45578888888765
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.2e-08 Score=94.96 Aligned_cols=178 Identities=22% Similarity=0.306 Sum_probs=119.5
Q ss_pred CCCCEEecCCCCCCC-ccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccC-cCccc-cccccCC
Q 048402 27 TSISRLDLSLNTGPE-GRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSS-SISGH-LTDQLGQ 103 (677)
Q Consensus 27 ~~L~~L~Ls~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~ 103 (677)
+.|++|||| +..++ ..+...+..|.+|+.|.+.|+++.+.+...+..-. +|+.|+++.+ .++.. ..-.+.+
T Consensus 185 sRlq~lDLS-~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-----~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLS-NSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-----NLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhhHHhhcc-hhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccc-----cceeeccccccccchhHHHHHHHh
Confidence 358888888 66555 33444567788888888888888877777776666 7888888865 34422 1224567
Q ss_pred CCCCCEEECcCCccccCCCcC-CCC-CCCCCEEEccccccc---cccChhhhhCCCCCCEEEeeccc-cceecCCCCCCC
Q 048402 104 FKNLDNLDLANNSIVGPIPQS-LGH-LSNLRVLQIYNNKLN---GTLSEIHFSNLTKLSWFRVGGNK-LTLEVRHDWIPP 177 (677)
Q Consensus 104 l~~L~~L~L~~n~l~~~~~~~-~~~-l~~L~~L~L~~n~i~---~~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~ 177 (677)
|+.|..|+++-|.+....... +.+ -++|+.|+++++.-. ..+. .....+++|..|||+++. ++......|...
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhc
Confidence 888888888888765332221 111 157888888876521 1121 144678889999998764 555445567778
Q ss_pred cCccEEEeecccCCCCCChh---ccCCCCCCEEEccCCC
Q 048402 178 FQLVALGFHNCYVGSRFPQW---LHSQKHLQYLNLLNSG 213 (677)
Q Consensus 178 ~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~l~~n~ 213 (677)
+.|++|.++.|+. .+|.. +...|.|.+|++.++-
T Consensus 338 ~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 338 NYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred chheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 8899999988874 44544 4577889999998874
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=1.1e-07 Score=87.45 Aligned_cols=113 Identities=23% Similarity=0.175 Sum_probs=56.7
Q ss_pred CccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCC-----cccccCCCCceecccCcccccc----CCcC
Q 048402 272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIP-----DCWMSYQNLEILELSNNKFTGK----LPNS 342 (677)
Q Consensus 272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~~~~ 342 (677)
.|++.....|++..-........+..-..|+++.+.+|.|....- ..+..+.+|+.||++.|.++-. +...
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 455555555555433333333333333567777777776552211 1123456777777777766522 2223
Q ss_pred cCCCCCccEEECcCCcccccCCccC------cCCCCCCEEecCCCccc
Q 048402 343 LGSLTSLIWLLLGKNRLSGTIPVSL------KNCTALESLDVGENEFV 384 (677)
Q Consensus 343 ~~~l~~L~~L~l~~n~~~~~~~~~~------~~l~~L~~L~l~~n~l~ 384 (677)
+...+.|+.|.+..|-++..-..++ ...++|..|....|.+.
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 3444556677777666553222211 12455666666665543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=4.1e-07 Score=84.89 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=61.5
Q ss_pred cCCCCCCCEEECcCCccccCC-CcCCC-CCCCCCEEEcccccccc--ccChhhhhCCCCCCEEEeeccccceecCCCCCC
Q 048402 101 LGQFKNLDNLDLANNSIVGPI-PQSLG-HLSNLRVLQIYNNKLNG--TLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIP 176 (677)
Q Consensus 101 ~~~l~~L~~L~L~~n~l~~~~-~~~~~-~l~~L~~L~L~~n~i~~--~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 176 (677)
+.....++.|-+.++.|...- ...|+ .++.++.+||.+|.|+. ++.. .+.+++.|+.|+++.|++...+...-.+
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCccc
Confidence 333344556666666654221 11122 46788999999998872 2222 5678899999999998887554333245
Q ss_pred CcCccEEEeecccCCCC-CChhccCCCCCCEEEccCC
Q 048402 177 PFQLVALGFHNCYVGSR-FPQWLHSQKHLQYLNLLNS 212 (677)
Q Consensus 177 ~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n 212 (677)
..+|+.|-|.+.++.-. ....+..+|.+++|.++.|
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 55555555555444321 1122233444444444444
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=8.9e-07 Score=81.58 Aligned_cols=93 Identities=22% Similarity=0.309 Sum_probs=52.5
Q ss_pred hcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCc---Ccccc-------ccccCCCCCCCEEECcCCcc
Q 048402 48 MASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSS---ISGHL-------TDQLGQFKNLDNLDLANNSI 117 (677)
Q Consensus 48 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~---l~~~~-------~~~~~~l~~L~~L~L~~n~l 117 (677)
+..+..++.++||+|.|...-...+...-.... +|+..+++.-- ....+ -+++.+|++|+..+||.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~-~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVR-NLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhc-ceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 444667777777777766443333332211111 56666665421 11111 23456777888888888777
Q ss_pred ccCCCcC----CCCCCCCCEEEcccccc
Q 048402 118 VGPIPQS----LGHLSNLRVLQIYNNKL 141 (677)
Q Consensus 118 ~~~~~~~----~~~l~~L~~L~L~~n~i 141 (677)
....|.. +++-+.|.+|.+++|.+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCC
Confidence 6554443 45667777777777766
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=8.4e-08 Score=78.84 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=26.9
Q ss_pred cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402 493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551 (677)
Q Consensus 493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 551 (677)
+.+++++|.+. .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34444444444 34444444555555555555544 34444444444445555444444
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=6.4e-06 Score=54.87 Aligned_cols=36 Identities=28% Similarity=0.552 Sum_probs=17.1
Q ss_pred CCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402 515 ATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551 (677)
Q Consensus 515 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 551 (677)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 33444555555555555555554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.1e-05 Score=53.67 Aligned_cols=38 Identities=45% Similarity=0.755 Sum_probs=32.4
Q ss_pred CCCcEEECCCCcccccCccccccCCCCCEEEcccCcccc
Q 048402 538 RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG 576 (677)
Q Consensus 538 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 576 (677)
++|++|++++|+|+ .+|..++++++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 567679999999999999999873
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.86 E-value=5.1e-05 Score=65.41 Aligned_cols=128 Identities=23% Similarity=0.308 Sum_probs=71.2
Q ss_pred ecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccc
Q 048402 17 TIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGH 96 (677)
Q Consensus 17 ~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~ 96 (677)
.++..+|.++++|+.+.+. + .+...-..+|.++++|+.+.+.++ +.......|..+. +++.+.+.. .+...
T Consensus 2 ~i~~~~F~~~~~l~~i~~~-~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-----~l~~i~~~~-~~~~i 72 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFP-N-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-----SLESITFPN-NLKSI 72 (129)
T ss_dssp EE-TTTTTT-TT--EEEET-S-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-----T-EEEEETS-TT-EE
T ss_pred EECHHHHhCCCCCCEEEEC-C-CeeEeChhhccccccccccccccc-ccccceeeeeccc-----ccccccccc-ccccc
Confidence 3556788889999999987 4 344444567888888999998774 6655666677776 788888865 55445
Q ss_pred cccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCC
Q 048402 97 LTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLS 157 (677)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~ 157 (677)
....|..+++|+.+++..+ +.......|.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus 73 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 73 GDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp -TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred ccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 5667888888999888765 554566678787 888888876 444 66777888877764
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=6.7e-06 Score=90.22 Aligned_cols=139 Identities=25% Similarity=0.356 Sum_probs=76.7
Q ss_pred CCCCEEecCCCCCCCccCchhhcC-CCCCCEEEccCCcCCc-ccchhhhhccccCcCCccEEEcccCcCccccccccCCC
Q 048402 27 TSISRLDLSLNTGPEGRIPRSMAS-LCNLKSINLRGVHLSQ-EISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQF 104 (677)
Q Consensus 27 ~~L~~L~Ls~~~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~-~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 104 (677)
.+|++||+++...+....|..++. +|.|++|.+++-.+.. ........++ +|..||+|+.+++.. ..++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp-----NL~sLDIS~TnI~nl--~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP-----NLRSLDISGTNISNL--SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccC-----ccceeecCCCCccCc--HHHhcc
Confidence 566777776544444444444443 6677777776655432 2233334455 677777777766643 456667
Q ss_pred CCCCEEECcCCcccc-CCCcCCCCCCCCCEEEccccccccc--cCh---hhhhCCCCCCEEEeeccccceecCC
Q 048402 105 KNLDNLDLANNSIVG-PIPQSLGHLSNLRVLQIYNNKLNGT--LSE---IHFSNLTKLSWFRVGGNKLTLEVRH 172 (677)
Q Consensus 105 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~--l~~---~~~~~l~~L~~L~l~~n~l~~~~~~ 172 (677)
++|++|.+.+=.+.. ..-..+.+|++|+.||+|....... +.. ..-..+++|+.||.+++.+......
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 777777666554432 1112455677777777775543311 111 0123467777777777766554433
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=7.9e-07 Score=73.24 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=67.9
Q ss_pred CCCCEEecCCCCCCCccCch---hhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCC
Q 048402 27 TSISRLDLSLNTGPEGRIPR---SMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQ 103 (677)
Q Consensus 27 ~~L~~L~Ls~~~~~~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 103 (677)
..+-.+||+ ++.+. .+++ .+....+|+..++++|.+.+.++..-..++ .++.+++++|.++ .+|..+..
T Consensus 27 kE~h~ldLs-sc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~-----t~t~lNl~~neis-dvPeE~Aa 98 (177)
T KOG4579|consen 27 KELHFLDLS-SCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFP-----TATTLNLANNEIS-DVPEELAA 98 (177)
T ss_pred HHhhhcccc-cchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccc-----hhhhhhcchhhhh-hchHHHhh
Confidence 445566666 44332 2223 334445666667777777654444444444 5677777777776 45555777
Q ss_pred CCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccCh
Q 048402 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSE 147 (677)
Q Consensus 104 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~ 147 (677)
++.|+.|+++.|.+. ..|..+..+.++-.|+.-+|.+. .++.
T Consensus 99 m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcH
Confidence 777777777777776 56666666777777777766665 5554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=4.4e-05 Score=77.02 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=51.0
Q ss_pred cCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCC
Q 048402 343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFL 422 (677)
Q Consensus 343 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 422 (677)
+..+..++.|++++|.++ .+|. -..+|++|.+++|.-...+|..+ .++|+.|++++|.....+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence 334578889999999877 4451 23469999998865444677644 35788899988833324443 57
Q ss_pred CEEeCCCCcC
Q 048402 423 QILDLADNNL 432 (677)
Q Consensus 423 ~~L~Ls~n~l 432 (677)
+.|+++++..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 7777776544
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.5e-05 Score=87.47 Aligned_cols=136 Identities=20% Similarity=0.277 Sum_probs=88.7
Q ss_pred CCCCEEEccCCcCC-cccchhhh-hccccCcCCccEEEcccCcCccc-cccccCCCCCCCEEECcCCccccCCCcCCCCC
Q 048402 52 CNLKSINLRGVHLS-QEISEILN-IFSGCVSIELESLDLRSSSISGH-LTDQLGQFKNLDNLDLANNSIVGPIPQSLGHL 128 (677)
Q Consensus 52 ~~L~~L~l~~n~l~-~~~~~~~~-~l~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 128 (677)
.+|++||++|...- ..-+..++ .+| .|+.|.+++-.+... .-....++++|..||+|++.++.. ..++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LP-----sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLP-----SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCc-----ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcc
Confidence 57888888886532 22233333 345 888888888666432 234456788888888888888744 678888
Q ss_pred CCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceec------CCCCCCCcCccEEEeecccCCCCC
Q 048402 129 SNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEV------RHDWIPPFQLVALGFHNCYVGSRF 194 (677)
Q Consensus 129 ~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~l~~n~~~~~~ 194 (677)
++|++|.+.+=.+...-.-..+.++++|+.||+|........ .+.-..++.|+.|+.+++.+...+
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 888888887766652122224667888888888876543322 112244678888888877665543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=7.3e-05 Score=66.34 Aligned_cols=108 Identities=24% Similarity=0.316 Sum_probs=75.9
Q ss_pred CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccc--cccChhhhhCCCCCCEE
Q 048402 82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLN--GTLSEIHFSNLTKLSWF 159 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~l~~~~~~~l~~L~~L 159 (677)
....+||++|++.. -+.|..+++|.+|.+++|.|+.+.|.--..+++|+.|.|.+|+|. |.+. .+..+++|+.|
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD--PLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc--hhccCCcccee
Confidence 56788888888863 234788889999999999998776666666788999999999886 2333 36677888888
Q ss_pred EeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCC
Q 048402 160 RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGM 214 (677)
Q Consensus 160 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i 214 (677)
.+-+|.++....- =--.+..+++|+.||+..-.-
T Consensus 119 tll~Npv~~k~~Y---------------------R~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 119 TLLGNPVEHKKNY---------------------RLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eecCCchhcccCc---------------------eeEEEEecCcceEeehhhhhH
Confidence 8888776532210 011245677788887766543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=0.00011 Score=65.33 Aligned_cols=105 Identities=21% Similarity=0.175 Sum_probs=56.7
Q ss_pred CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL 403 (677)
Q Consensus 324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 403 (677)
....+||++|.+.. -+.|..++.|.+|.+++|+|+.+.|.--..+++|..|.+.+|.+..-..-.-...++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44556666665542 1235556666666666666665555444445566666666665541111000114666666666
Q ss_pred CCCcccccC---CccccCCCCCCEEeCCCC
Q 048402 404 RSNNFHGPL---PTRLCDLAFLQILDLADN 430 (677)
Q Consensus 404 ~~n~l~~~~---~~~~~~l~~L~~L~Ls~n 430 (677)
-+|..+..- -..+..+++|+.||.++=
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 666665221 123566777888877653
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.0002 Score=72.34 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=62.0
Q ss_pred cccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCc
Q 048402 319 WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM 398 (677)
Q Consensus 319 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 398 (677)
+..+.+++.|++++|.++ .+|. -.++|+.|.+++|.-...+|..+ .++|+.|++++|.....+| ++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------ccc
Confidence 445789999999999888 4562 23469999999875544666554 3689999999984322454 357
Q ss_pred eEEEcCCCcccc--cCCccccCCCCCCEEeCCC
Q 048402 399 VVLILRSNNFHG--PLPTRLCDLAFLQILDLAD 429 (677)
Q Consensus 399 ~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~ 429 (677)
+.|++..+.... .+| ++|+.|.+.+
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~ 141 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINS 141 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheeccc
Confidence 778887665431 222 2566776644
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.55 E-value=0.00027 Score=60.87 Aligned_cols=36 Identities=11% Similarity=0.288 Sum_probs=11.8
Q ss_pred ccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEc
Q 048402 100 QLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQI 136 (677)
Q Consensus 100 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 136 (677)
+|.++++|+.+++.++ +.......|.++++++.+.+
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred hccccccccccccccc-ccccceeeeecccccccccc
Confidence 3444444444444332 22222333444434444444
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.41 E-value=4e-06 Score=82.26 Aligned_cols=149 Identities=21% Similarity=0.132 Sum_probs=86.5
Q ss_pred ccccEEEcccCCCCCCC-----CCCCCCccEEEccCCcc-cccCChhHhhccCCCCCcCeEecCCCCCcc--cCCccccc
Q 048402 250 TQLLFLSVHSNNMSGPL-----PLISSNLVYLDLSNNSF-SGSVSHYLCYRINEPKSLIGLKLKDNSLQG--EIPDCWMS 321 (677)
Q Consensus 250 ~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~ 321 (677)
..|+.++.+++...+.. -...++|+.+.++.++- +..-...+ -.+++.|+.+++.++.... .+...-.+
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l---~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML---GRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh---hcCChhhhhhcccccceehhhhHhhhccC
Confidence 45566666555432211 12256777888777753 22111111 1346788888888876432 12223347
Q ss_pred CCCCceecccCccc-cccC----CcCcCCCCCccEEECcCCccc-ccCCccCcCCCCCCEEecCCCcccccCC-hhhhhc
Q 048402 322 YQNLEILELSNNKF-TGKL----PNSLGSLTSLIWLLLGKNRLS-GTIPVSLKNCTALESLDVGENEFVGNIP-TWTGER 394 (677)
Q Consensus 322 l~~L~~L~L~~n~l-~~~~----~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~ 394 (677)
++.|+++.++++.. ++.. ...-.....|+.+.+++++.+ ...-..+..+++|+.+++.++.-...-+ ..+...
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 88999999998854 3321 222345678999999998754 3334456778999999998885432222 222234
Q ss_pred cCCceEE
Q 048402 395 FSRMVVL 401 (677)
Q Consensus 395 l~~L~~L 401 (677)
+|++++.
T Consensus 451 lp~i~v~ 457 (483)
T KOG4341|consen 451 LPNIKVH 457 (483)
T ss_pred Cccceeh
Confidence 5555543
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.18 E-value=1.9e-05 Score=77.57 Aligned_cols=156 Identities=15% Similarity=0.027 Sum_probs=100.3
Q ss_pred CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCC-CcccCCcc-cccCCCCceecccCcccc--ccCCcCcCC
Q 048402 270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNS-LQGEIPDC-WMSYQNLEILELSNNKFT--GKLPNSLGS 345 (677)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~--~~~~~~~~~ 345 (677)
+..|+.++.+++...+. ..+..-...+.+|+.+.+..++ ++...-.. -.+++.|+.+++..+... +.+...-.+
T Consensus 293 c~~lq~l~~s~~t~~~d--~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITD--EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhHhhhhcccCCCCCch--HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 56789999988865322 2222233457899999999986 33221111 246789999999988543 223333357
Q ss_pred CCCccEEECcCCcccccC-----CccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccc--ccCCccccC
Q 048402 346 LTSLIWLLLGKNRLSGTI-----PVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH--GPLPTRLCD 418 (677)
Q Consensus 346 l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~ 418 (677)
++.|+.+.+++|...... ...-.++..|+.+.+++++....-.......+++|+.+++-+++-. ..+...-..
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 899999999988654222 2233567889999999998654433333446889999999888643 223333456
Q ss_pred CCCCCEEeC
Q 048402 419 LAFLQILDL 427 (677)
Q Consensus 419 l~~L~~L~L 427 (677)
++++++.-+
T Consensus 451 lp~i~v~a~ 459 (483)
T KOG4341|consen 451 LPNIKVHAY 459 (483)
T ss_pred Cccceehhh
Confidence 777766543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.82 E-value=0.001 Score=61.98 Aligned_cols=108 Identities=22% Similarity=0.319 Sum_probs=58.4
Q ss_pred cCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEcccc--ccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCc
Q 048402 101 LGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNN--KLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPF 178 (677)
Q Consensus 101 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 178 (677)
...+..|+.|++.+..++.. ..+-.+++|++|.++.| ++.+.++. ....+++|+++++++|++.. ...+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~--lstl---- 109 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKD--LSTL---- 109 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCcccc--cccc----
Confidence 33444555566655555422 34556667777777777 44444444 34455667777776666552 1111
Q ss_pred CccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCcc--chHHHhccCCccEEEC
Q 048402 179 QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLF--PIRFLKSAFQLKFLDL 234 (677)
Q Consensus 179 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~L~~L~L 234 (677)
..+..+.+|..|++.+|..+... ....+..+++|++|+-
T Consensus 110 -----------------~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 -----------------RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred -----------------chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 12344555666666666555422 2334455667766654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.00062 Score=63.35 Aligned_cols=78 Identities=28% Similarity=0.401 Sum_probs=41.6
Q ss_pred CccEEEcccC--cCccccccccCCCCCCCEEECcCCccccCCCcC---CCCCCCCCEEEccccccccc--cChhhhhCCC
Q 048402 82 ELESLDLRSS--SISGHLTDQLGQFKNLDNLDLANNSIVGPIPQS---LGHLSNLRVLQIYNNKLNGT--LSEIHFSNLT 154 (677)
Q Consensus 82 ~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~i~~~--l~~~~~~~l~ 154 (677)
+|++|.++.| ++++.++.-...+++|++|++++|.+.. ++. +..+.+|..|++.+|..+.. --...|.-++
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 5666666666 4444444344445666666666666541 222 33455566666666655421 1123455667
Q ss_pred CCCEEEe
Q 048402 155 KLSWFRV 161 (677)
Q Consensus 155 ~L~~L~l 161 (677)
+|++|+-
T Consensus 144 ~L~~LD~ 150 (260)
T KOG2739|consen 144 SLKYLDG 150 (260)
T ss_pred hhccccc
Confidence 7776653
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.00028 Score=65.84 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=25.2
Q ss_pred ccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCC
Q 048402 4 LEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLS 65 (677)
Q Consensus 4 L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 65 (677)
++.|+.++|.+. .| ..+..++.|++|.|| -|.++.. ..+..|++|+.|+|..|.|.
T Consensus 21 vkKLNcwg~~L~-DI--sic~kMp~lEVLsLS-vNkIssL--~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 21 VKKLNCWGCGLD-DI--SICEKMPLLEVLSLS-VNKISSL--APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred hhhhcccCCCcc-HH--HHHHhcccceeEEee-ccccccc--hhHHHHHHHHHHHHHhcccc
Confidence 444555555554 22 224445555555555 2322221 23444455555555555444
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.02 E-value=1.9e-05 Score=82.86 Aligned_cols=113 Identities=26% Similarity=0.357 Sum_probs=60.8
Q ss_pred CCEEecCCCCCCCcc----CchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccc----cccc
Q 048402 29 ISRLDLSLNTGPEGR----IPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGH----LTDQ 100 (677)
Q Consensus 29 L~~L~Ls~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~----~~~~ 100 (677)
+.+|+|. ++.+... +..++....+|..|++++|.+.+.....+...-..+...+++|++..|.+++. +.+.
T Consensus 89 l~~L~L~-~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLA-NNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhh-hCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 6667776 4444422 23345666777777777777764433333221111111566677777666543 3445
Q ss_pred cCCCCCCCEEECcCCcccc----CCCcCC----CCCCCCCEEEccccccc
Q 048402 101 LGQFKNLDNLDLANNSIVG----PIPQSL----GHLSNLRVLQIYNNKLN 142 (677)
Q Consensus 101 ~~~l~~L~~L~L~~n~l~~----~~~~~~----~~l~~L~~L~L~~n~i~ 142 (677)
+.....++.++++.|.+.. .++..+ ....++++|.+++|.++
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 5556667777777776531 111222 23556666666666654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.99 E-value=0.001 Score=71.97 Aligned_cols=131 Identities=22% Similarity=0.220 Sum_probs=70.5
Q ss_pred CCCCCCEEecCCCCCCCcc-CchhhcCCCCCCEEEccCC-cCCcccc----hhhhhccccCcCCccEEEcccCc-Ccccc
Q 048402 25 NLTSISRLDLSLNTGPEGR-IPRSMASLCNLKSINLRGV-HLSQEIS----EILNIFSGCVSIELESLDLRSSS-ISGHL 97 (677)
Q Consensus 25 ~l~~L~~L~Ls~~~~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~----~~~~~l~~~~~~~L~~L~L~~n~-l~~~~ 97 (677)
.++.|+.|.+.....+... +-.....+++|+.|+++++ ......+ .....+. +|+.|+++++. ++...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-----~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICR-----KLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcC-----CcCccchhhhhccCchh
Confidence 4677888877733232211 3344566778888888762 1111111 1223334 77888888776 54332
Q ss_pred ccccC-CCCCCCEEECcCCc-cccCC-CcCCCCCCCCCEEEcccccccc--ccChhhhhCCCCCCEEEe
Q 048402 98 TDQLG-QFKNLDNLDLANNS-IVGPI-PQSLGHLSNLRVLQIYNNKLNG--TLSEIHFSNLTKLSWFRV 161 (677)
Q Consensus 98 ~~~~~-~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~i~~--~l~~~~~~~l~~L~~L~l 161 (677)
-..+. .+++|++|.+.++. ++... ......+++|++|+++++.... .+.. ...++++++.+.+
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA-LLKNCPNLRELKL 328 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH-HHHhCcchhhhhh
Confidence 22332 37788888877666 33221 1223456778888888766431 1222 2445666666543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.00033 Score=65.31 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=21.0
Q ss_pred ccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCcc
Q 048402 198 LHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238 (677)
Q Consensus 198 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~ 238 (677)
+..|++|++|.|..|.|.++.......++++|+.|.|..|.
T Consensus 59 l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 59 LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 34455555555555555554444444455555555554444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0066 Score=33.42 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=5.0
Q ss_pred CcEEeccCCcce
Q 048402 516 TQSLNFSHNSFT 527 (677)
Q Consensus 516 L~~L~Ls~n~l~ 527 (677)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.47 E-value=0.0069 Score=33.37 Aligned_cols=21 Identities=52% Similarity=0.743 Sum_probs=14.4
Q ss_pred CCcEEECCCCcccccCcccccc
Q 048402 539 SLESIDFSVNQLSGEIPQSMSN 560 (677)
Q Consensus 539 ~L~~L~Ls~N~l~~~~p~~l~~ 560 (677)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 66665554
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.37 E-value=0.0024 Score=69.13 Aligned_cols=175 Identities=19% Similarity=0.113 Sum_probs=97.8
Q ss_pred cCCCCCCEEEccCCc-CCcc-cchhhhhccccCcCCccEEEcccC-cCcccc----ccccCCCCCCCEEECcCCc-cccC
Q 048402 49 ASLCNLKSINLRGVH-LSQE-ISEILNIFSGCVSIELESLDLRSS-SISGHL----TDQLGQFKNLDNLDLANNS-IVGP 120 (677)
Q Consensus 49 ~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~~~~~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~ 120 (677)
..++.|+.|.+.++. +... ........+ .|+.|+++++ ...... ......+.+|+.|+++++. ++..
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCP-----NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCc-----hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence 347889999888764 3321 234445555 8999999873 221111 2234566889999999887 5533
Q ss_pred CCcCCC-CCCCCCEEEccccc-cccccChhhhhCCCCCCEEEeecccccee--cCCCCCCCcCccEEEeecccCCCCCCh
Q 048402 121 IPQSLG-HLSNLRVLQIYNNK-LNGTLSEIHFSNLTKLSWFRVGGNKLTLE--VRHDWIPPFQLVALGFHNCYVGSRFPQ 196 (677)
Q Consensus 121 ~~~~~~-~l~~L~~L~L~~n~-i~~~l~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~ 196 (677)
.-..+. .+++|++|.+.++. ++..--......++.|++|+++++..... .......+++++.+.+....
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~------- 332 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN------- 332 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-------
Confidence 333333 37899999987776 44332233556788899999998764311 11112335555554443321
Q ss_pred hccCCCCCCEEEccCCCCCC--ccchHHHhccCCccEEECCCcc
Q 048402 197 WLHSQKHLQYLNLLNSGMSD--LFPIRFLKSAFQLKFLDLGLNQ 238 (677)
Q Consensus 197 ~~~~l~~L~~L~l~~n~i~~--~~~~~~~~~~~~L~~L~Ls~n~ 238 (677)
.++.++.+.+....... .........++.++.+.+..+.
T Consensus 333 ---~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 333 ---GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred ---CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 13344444444332211 1222333456666666666655
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.34 E-value=0.00036 Score=73.46 Aligned_cols=162 Identities=26% Similarity=0.254 Sum_probs=78.2
Q ss_pred CccEEEccCCcccccCChhHhhccCCC-CCcCeEecCCCCCccc----CCcccccCCCCceecccCccccc----cCCc-
Q 048402 272 NLVYLDLSNNSFSGSVSHYLCYRINEP-KSLIGLKLKDNSLQGE----IPDCWMSYQNLEILELSNNKFTG----KLPN- 341 (677)
Q Consensus 272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~- 341 (677)
.|+.|++++|.+.+.....++..+... ..++.|.+..|.++.. +...+.....++.++++.|.+.. .++.
T Consensus 116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~ 195 (478)
T KOG4308|consen 116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA 195 (478)
T ss_pred cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence 444444444444433333333333332 3344455555544432 22233344555555665555431 1111
Q ss_pred ---CcCCCCCccEEECcCCcccccC----CccCcCCCC-CCEEecCCCcccccCChhhhh---cc-CCceEEEcCCCccc
Q 048402 342 ---SLGSLTSLIWLLLGKNRLSGTI----PVSLKNCTA-LESLDVGENEFVGNIPTWTGE---RF-SRMVVLILRSNNFH 409 (677)
Q Consensus 342 ---~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~---~l-~~L~~L~L~~n~l~ 409 (677)
.+....++++|.+.+|.++... ...+...++ +..+++..|.+.+..-..... .+ ..++.++++.|.++
T Consensus 196 l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 196 LESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred hhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 2223556666666666655221 122333444 556777777665331111111 12 45567777777776
Q ss_pred cc----CCccccCCCCCCEEeCCCCcCC
Q 048402 410 GP----LPTRLCDLAFLQILDLADNNLF 433 (677)
Q Consensus 410 ~~----~~~~~~~l~~L~~L~Ls~n~l~ 433 (677)
.. +...+..++.++.+.+++|.+.
T Consensus 276 ~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 276 EKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred ccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 32 3344556667777888777764
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.93 E-value=0.09 Score=26.74 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=3.0
Q ss_pred cEEeccCCc
Q 048402 517 QSLNFSHNS 525 (677)
Q Consensus 517 ~~L~Ls~n~ 525 (677)
++|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.65 E-value=0.0059 Score=55.68 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=71.3
Q ss_pred hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402 489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN 568 (677)
Q Consensus 489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 568 (677)
....+.||++.|++. .....|+-++.|..|+++.|.+. ..|+.++++..++.+++.+|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 445678999999887 45567788888899999999988 78888999999999999988888 7888899999999999
Q ss_pred cccCccc
Q 048402 569 LSNNKLT 575 (677)
Q Consensus 569 ls~N~l~ 575 (677)
+.+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999874
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.39 E-value=0.21 Score=28.70 Aligned_cols=14 Identities=50% Similarity=0.638 Sum_probs=8.1
Q ss_pred CCCcEEECCCCccc
Q 048402 538 RSLESIDFSVNQLS 551 (677)
Q Consensus 538 ~~L~~L~Ls~N~l~ 551 (677)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555666666555
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.39 E-value=0.21 Score=28.70 Aligned_cols=14 Identities=50% Similarity=0.638 Sum_probs=8.1
Q ss_pred CCCcEEECCCCccc
Q 048402 538 RSLESIDFSVNQLS 551 (677)
Q Consensus 538 ~~L~~L~Ls~N~l~ 551 (677)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555666666555
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.17 E-value=0.28 Score=28.15 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=12.6
Q ss_pred CCCCEEEccccccccccChhhh
Q 048402 129 SNLRVLQIYNNKLNGTLSEIHF 150 (677)
Q Consensus 129 ~~L~~L~L~~n~i~~~l~~~~~ 150 (677)
++|++|+|++|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.17 E-value=0.28 Score=28.15 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=12.6
Q ss_pred CCCCEEEccccccccccChhhh
Q 048402 129 SNLRVLQIYNNKLNGTLSEIHF 150 (677)
Q Consensus 129 ~~L~~L~L~~n~i~~~l~~~~~ 150 (677)
++|++|+|++|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5555444
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.86 E-value=0.013 Score=53.59 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=69.0
Q ss_pred hhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCC
Q 048402 47 SMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLG 126 (677)
Q Consensus 47 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 126 (677)
.+......+.||++.|++.. .-..|..+. .++.++++.|.+. ..|+.++....++++++..|..+ ..|.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t-----~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILT-----RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHH-----HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 45667788888888887653 233455566 7888889888887 57888888888889998888887 7788999
Q ss_pred CCCCCCEEEccccccc
Q 048402 127 HLSNLRVLQIYNNKLN 142 (677)
Q Consensus 127 ~l~~L~~L~L~~n~i~ 142 (677)
..++++++++.+|.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999998888765
No 82
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=88.76 E-value=1.3 Score=45.32 Aligned_cols=61 Identities=25% Similarity=0.207 Sum_probs=32.3
Q ss_pred CCCEEECcCCccccCCCcCCCCC---CCCCEEEcccccccc--ccChhhhhCCCCCCEEEeecccc
Q 048402 106 NLDNLDLANNSIVGPIPQSLGHL---SNLRVLQIYNNKLNG--TLSEIHFSNLTKLSWFRVGGNKL 166 (677)
Q Consensus 106 ~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~~--~l~~~~~~~l~~L~~L~l~~n~l 166 (677)
.+.+++++.|.....+|..+..+ .-++.++.+...+.- ......++.-+.+...+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 46677777776665555443222 345666666555431 11222344456677777766654
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.68 E-value=0.19 Score=28.20 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=5.7
Q ss_pred CCCcEEECCCCccc
Q 048402 538 RSLESIDFSVNQLS 551 (677)
Q Consensus 538 ~~L~~L~Ls~N~l~ 551 (677)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34445555555444
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.58 E-value=0.34 Score=27.17 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=7.0
Q ss_pred CCCCEEEccCCcCCcc
Q 048402 52 CNLKSINLRGVHLSQE 67 (677)
Q Consensus 52 ~~L~~L~l~~n~l~~~ 67 (677)
++|++|++++|.|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4455555555554443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.27 E-value=0.16 Score=45.77 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=15.5
Q ss_pred CceecccCccccccCCcCcCCCCCccEEECcCC
Q 048402 325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357 (677)
Q Consensus 325 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 357 (677)
++.+|-++..|....-+.+.++++++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444444544444444444444444444444444
No 86
>PF15102 TMEM154: TMEM154 protein family
Probab=80.43 E-value=2.5 Score=36.00 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=11.7
Q ss_pred HHHHHHhhheeeeccchhhH
Q 048402 639 VGFGCFIGPLIFNRRWRYNY 658 (677)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~ 658 (677)
++++++++++.|+||||.+-
T Consensus 70 lLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHheeEEeecccCC
Confidence 33445555566777777643
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.84 E-value=0.58 Score=42.34 Aligned_cols=82 Identities=24% Similarity=0.225 Sum_probs=50.7
Q ss_pred CCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcC-CcccchhhhhccccCcCCccEEEcccC-cCccccccccCCCC
Q 048402 28 SISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHL-SQEISEILNIFSGCVSIELESLDLRSS-SISGHLTDQLGQFK 105 (677)
Q Consensus 28 ~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~ 105 (677)
.++.+|-+ +..+...--.-+.+++.++.|.+.++.- .+.--+.++. ..++|+.|++++| +|+..--..+..++
T Consensus 102 ~IeaVDAs-ds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDAS-DSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred eEEEEecC-CchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHHHHhh
Confidence 46777777 6655544445567777777777776642 2222222222 2238999999877 56654445567778
Q ss_pred CCCEEECcC
Q 048402 106 NLDNLDLAN 114 (677)
Q Consensus 106 ~L~~L~L~~ 114 (677)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 888887754
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.35 E-value=2.2 Score=24.52 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=9.1
Q ss_pred CCCcEEECCCCccc
Q 048402 538 RSLESIDFSVNQLS 551 (677)
Q Consensus 538 ~~L~~L~Ls~N~l~ 551 (677)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.57 E-value=15 Score=38.13 Aligned_cols=63 Identities=22% Similarity=0.123 Sum_probs=30.1
Q ss_pred CccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcc---cCCcccccCCCCceecccCccc
Q 048402 272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG---EIPDCWMSYQNLEILELSNNKF 335 (677)
Q Consensus 272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l 335 (677)
.+.+++++.|.....++....... ....++.++.+...+.- ..+-.++..++++..+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a-~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKA-GTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhh-hhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 356666776666666665443221 12334555555443321 1122233445566666655543
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.26 E-value=3 Score=23.91 Aligned_cols=13 Identities=46% Similarity=0.634 Sum_probs=6.8
Q ss_pred CCcEEECCCCccc
Q 048402 539 SLESIDFSVNQLS 551 (677)
Q Consensus 539 ~L~~L~Ls~N~l~ 551 (677)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 91
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=70.00 E-value=6.6 Score=25.18 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=9.9
Q ss_pred ceEeeeehhHHHHHHHHHhhhee
Q 048402 627 HWLYVSIALGFVVGFGCFIGPLI 649 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~ 649 (677)
..+.+++++.+++.+++++++++
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhh
Confidence 33444555554444433333333
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=69.58 E-value=2.7 Score=52.91 Aligned_cols=37 Identities=27% Similarity=0.271 Sum_probs=22.5
Q ss_pred ECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402 544 DFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 544 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
||++|+|+.+.+..|..+++|+.|+|++||+.|.|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 4566666655555566666666666666666666543
No 93
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=69.31 E-value=1.1 Score=37.19 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=17.5
Q ss_pred EeeeehhHHHHHHHHHhhheeeeccch
Q 048402 629 LYVSIALGFVVGFGCFIGPLIFNRRWR 655 (677)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (677)
.++++++|+++++++++++++|+.|++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777676666655443
No 94
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=67.35 E-value=5.1 Score=34.41 Aligned_cols=10 Identities=10% Similarity=0.454 Sum_probs=4.5
Q ss_pred EeeeehhHHH
Q 048402 629 LYVSIALGFV 638 (677)
Q Consensus 629 ~~~~~~~~~~ 638 (677)
+++++++|+.
T Consensus 50 IVIGvVVGVG 59 (154)
T PF04478_consen 50 IVIGVVVGVG 59 (154)
T ss_pred EEEEEEeccc
Confidence 4444444433
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.63 E-value=5.6 Score=23.26 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=9.3
Q ss_pred CCCCEEEccCCcCCcc
Q 048402 52 CNLKSINLRGVHLSQE 67 (677)
Q Consensus 52 ~~L~~L~l~~n~l~~~ 67 (677)
++|++|||++|.+...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 3566666666666543
No 96
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=58.96 E-value=4.7 Score=32.09 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=9.7
Q ss_pred EeeeehhHHHHHHHHHhhhee
Q 048402 629 LYVSIALGFVVGFGCFIGPLI 649 (677)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~ 649 (677)
.+.++++++++++.+++++++
T Consensus 67 aiagi~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 67 AIAGISVAVVAVVGGLVGFLC 87 (96)
T ss_pred cEEEEEeehhhHHHHHHHHHh
Confidence 445555554444434444443
No 97
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.54 E-value=8.6 Score=40.62 Aligned_cols=38 Identities=29% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCCCCCEEEccCCCCCCccc-hHHHhccCCccEEECCCc
Q 048402 200 SQKHLQYLNLLNSGMSDLFP-IRFLKSAFQLKFLDLGLN 237 (677)
Q Consensus 200 ~l~~L~~L~l~~n~i~~~~~-~~~~~~~~~L~~L~Ls~n 237 (677)
+.+.+..+++++|++..+.. ..+....|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 45566777777776655432 223344567777777777
No 98
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=53.95 E-value=6.3 Score=35.90 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=14.9
Q ss_pred cceEeeeehhHHHHHHHHHhhheeee
Q 048402 626 DHWLYVSIALGFVVGFGCFIGPLIFN 651 (677)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (677)
..+++++++.|+++++++++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHH
Confidence 35667777777666655444444443
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.10 E-value=9.7 Score=40.24 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=8.4
Q ss_pred CCCcCeEecCCCCCc
Q 048402 298 PKSLIGLKLKDNSLQ 312 (677)
Q Consensus 298 ~~~L~~L~l~~n~l~ 312 (677)
.+.+..+.+++|++.
T Consensus 217 ~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY 231 (585)
T ss_pred Ccceeeeecccchhh
Confidence 455555666666554
No 100
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=43.13 E-value=11 Score=37.85 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=10.4
Q ss_pred eeeehhHHHHHHHHHhhheeee
Q 048402 630 YVSIALGFVVGFGCFIGPLIFN 651 (677)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~ 651 (677)
++-+++|++++.++++++++|.
T Consensus 272 ~vPIaVG~~La~lvlivLiaYl 293 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAYL 293 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhhe
Confidence 3445555555444444444443
No 101
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=38.30 E-value=20 Score=20.31 Aligned_cols=8 Identities=50% Similarity=0.783 Sum_probs=3.1
Q ss_pred CCCEEecC
Q 048402 28 SISRLDLS 35 (677)
Q Consensus 28 ~L~~L~Ls 35 (677)
+|++|+++
T Consensus 3 ~L~~L~l~ 10 (26)
T smart00367 3 NLRELDLS 10 (26)
T ss_pred CCCEeCCC
Confidence 33333333
No 102
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=35.13 E-value=21 Score=22.77 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=5.0
Q ss_pred hhheeeeccch
Q 048402 645 IGPLIFNRRWR 655 (677)
Q Consensus 645 ~~~~~~~~~~~ 655 (677)
++..+.+++|.
T Consensus 24 iva~~iYRKw~ 34 (43)
T PF08114_consen 24 IVALFIYRKWQ 34 (43)
T ss_pred HHHHHHHHHHH
Confidence 33344445554
No 103
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=32.09 E-value=29 Score=28.68 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhheeeeccch
Q 048402 634 ALGFVVGFGCFIGPLIFNRRWR 655 (677)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~ 655 (677)
+.++++++.++.++++|++++|
T Consensus 85 al~v~lVl~llsg~lv~rrcrr 106 (129)
T PF12191_consen 85 ALSVVLVLALLSGFLVWRRCRR 106 (129)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 3333333333334444444333
No 104
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=31.51 E-value=15 Score=23.20 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=5.9
Q ss_pred eeehhHHHHHHHH
Q 048402 631 VSIALGFVVGFGC 643 (677)
Q Consensus 631 ~~~~~~~~~~~~~ 643 (677)
+++++++++++++
T Consensus 6 IaIIv~V~vg~~i 18 (38)
T PF02439_consen 6 IAIIVAVVVGMAI 18 (38)
T ss_pred hhHHHHHHHHHHH
Confidence 3444454444433
No 105
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=29.65 E-value=18 Score=35.43 Aligned_cols=19 Identities=11% Similarity=-0.351 Sum_probs=0.0
Q ss_pred HhhheeeeccchhhHHhHH
Q 048402 644 FIGPLIFNRRWRYNYYHFL 662 (677)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~ 662 (677)
+++++++++|||++.|..+
T Consensus 162 A~iIa~icyrrkR~GK~~~ 180 (290)
T PF05454_consen 162 AGIIACICYRRKRKGKMSL 180 (290)
T ss_dssp -------------------
T ss_pred HHHHHHHhhhhhhcccccc
Confidence 3444455566777777776
No 106
>PF10725 DUF2517: Protein of unknown function (DUF2517); InterPro: IPR019663 This entry represents proteins conserved in Proteobacteria and includes the predicted protein YbfA. The function is not known.
Probab=27.77 E-value=92 Score=22.00 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=19.3
Q ss_pred HHHHhhheeeeccchhhHHhHHHhhhee
Q 048402 641 FGCFIGPLIFNRRWRYNYYHFLNRLENI 668 (677)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (677)
++++...+...++-|-+++-++.+.|.+
T Consensus 20 ~GvlAlPvMLf~~dRArfYSyLhrvW~K 47 (63)
T PF10725_consen 20 AGVLALPVMLFRSDRARFYSYLHRVWSK 47 (63)
T ss_pred HHHhhhheeeeecchhHHHHHHHHHHHh
Confidence 3344555566667788888888888764
No 107
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=27.51 E-value=21 Score=26.92 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=6.0
Q ss_pred hHHHHHHHHHhhheeee
Q 048402 635 LGFVVGFGCFIGPLIFN 651 (677)
Q Consensus 635 ~~~~~~~~~~~~~~~~~ 651 (677)
+|+++++++++++++.+
T Consensus 8 ~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 8 VGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhheeEEEEE
Confidence 33333333333333333
No 108
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=27.18 E-value=64 Score=22.49 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=14.6
Q ss_pred eeeehhHHHHHHHHHhhheeeec
Q 048402 630 YVSIALGFVVGFGCFIGPLIFNR 652 (677)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~ 652 (677)
+..+++.+++++++++++++|..
T Consensus 30 v~tVVlP~l~~~~~~Ivv~vy~k 52 (56)
T PF15012_consen 30 VFTVVLPTLAAVFLFIVVFVYLK 52 (56)
T ss_pred heeEehhHHHHHHHHHhheeEEe
Confidence 34555666666666777777754
No 109
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=26.74 E-value=64 Score=27.96 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=14.1
Q ss_pred ccceEeeeehhHHHHHHHHHh
Q 048402 625 VDHWLYVSIALGFVVGFGCFI 645 (677)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~ 645 (677)
.-..+.+++++++++++++++
T Consensus 50 IVIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALV 70 (154)
T ss_pred EEEEEEecccHHHHHHHHHhh
Confidence 337778888888876654444
No 110
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=25.16 E-value=24 Score=25.31 Aligned_cols=11 Identities=36% Similarity=0.347 Sum_probs=0.4
Q ss_pred hhheeeeccch
Q 048402 645 IGPLIFNRRWR 655 (677)
Q Consensus 645 ~~~~~~~~~~~ 655 (677)
+.+++|+.|.|
T Consensus 29 Ilf~iyR~rkk 39 (64)
T PF01034_consen 29 ILFLIYRMRKK 39 (64)
T ss_dssp --------S--
T ss_pred HHHHHHHHHhc
Confidence 34444544443
No 111
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=24.38 E-value=34 Score=23.35 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=10.4
Q ss_pred HhhheeeeccchhhHHhHHHh
Q 048402 644 FIGPLIFNRRWRYNYYHFLNR 664 (677)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~ 664 (677)
++++.+...-+++.|++-...
T Consensus 15 lLg~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 15 LLGLSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHHHHhhccccccccCC
Confidence 333334444455666665544
No 112
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=24.32 E-value=32 Score=26.72 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=16.0
Q ss_pred ceEeeeehhHHHHHHHHHhhheeeeccch
Q 048402 627 HWLYVSIALGFVVGFGCFIGPLIFNRRWR 655 (677)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (677)
.|.+++.+.|+++.++++..++..+.||+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 56666666666655554444444445555
No 113
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.49 E-value=27 Score=34.46 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=0.0
Q ss_pred EeeeehhHHHHHHHHHhhheeeeccchhhHHhHHH
Q 048402 629 LYVSIALGFVVGFGCFIGPLIFNRRWRYNYYHFLN 663 (677)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (677)
++.++++.+++++++++..+++++|++.+-+..+.
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRKKKmkKKlQ 292 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRKKKMKKKLQ 292 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
No 114
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.77 E-value=27 Score=33.58 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=5.1
Q ss_pred eeeeccchhhHH
Q 048402 648 LIFNRRWRYNYY 659 (677)
Q Consensus 648 ~~~~~~~~~~~~ 659 (677)
++.+||++..||
T Consensus 280 iWlyrrRK~swk 291 (295)
T TIGR01478 280 IWLYRRRKKSWK 291 (295)
T ss_pred HHHHHhhccccc
Confidence 333444444444
No 115
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.02 E-value=51 Score=42.53 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=28.6
Q ss_pred EcccCcccccCCcccCCCCCCcEEeccCCccee
Q 048402 496 DVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTG 528 (677)
Q Consensus 496 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 528 (677)
||++|+|+.+.+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999998888889999999999999998753
Done!