Query 048402
Match_columns 677
No_of_seqs 499 out of 4145
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 15:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.6E-71 1.6E-75 627.4 41.7 593 1-610 99-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-65 6.8E-70 581.1 37.7 580 3-601 51-720 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-57 7.1E-62 511.3 44.7 569 2-579 25-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4E-56 1.4E-60 500.8 44.0 521 1-555 48-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.5E-55 5.3E-60 489.5 44.8 519 2-581 33-566 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1E-54 3.5E-59 482.9 40.2 507 6-581 15-564 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 4.9E-55 1.7E-59 501.0 36.4 554 6-609 8-591 (844)
8 3t6q_A CD180 antigen; protein- 100.0 2.7E-53 9.1E-58 471.5 41.8 529 5-607 15-564 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-52 8E-57 463.9 38.2 486 2-555 32-562 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-50 5E-55 463.9 35.8 523 30-607 7-564 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 8.8E-49 3E-53 432.3 38.4 509 5-584 10-540 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1E-48 3.5E-53 429.4 31.0 492 2-580 5-515 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 3E-47 1E-51 420.0 36.1 488 2-556 28-536 (570)
14 4g8a_A TOLL-like receptor 4; l 100.0 8.5E-46 2.9E-50 414.3 37.8 512 3-580 53-585 (635)
15 4eco_A Uncharacterized protein 100.0 6E-48 2.1E-52 427.6 19.2 443 27-577 81-602 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-47 2E-51 412.3 25.2 458 5-580 3-486 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-46 9.7E-51 410.0 30.5 491 27-607 5-514 (549)
18 4eco_A Uncharacterized protein 100.0 1E-45 3.4E-50 409.8 19.9 442 52-598 81-600 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 3.7E-43 1.3E-47 392.9 39.7 525 7-607 36-584 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 6.3E-45 2.2E-49 409.1 25.0 386 83-575 425-864 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-44 1.2E-48 390.2 28.4 442 2-555 21-485 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3E-44 1E-48 394.1 25.5 465 24-581 28-516 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 1.6E-42 5.5E-47 389.6 34.2 360 139-579 435-844 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-41 1.5E-45 369.0 30.5 456 3-555 32-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 1.1E-39 3.9E-44 348.8 29.3 371 105-581 30-414 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 4.6E-39 1.6E-43 344.1 32.0 386 5-438 13-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.5E-38 1.9E-42 332.4 27.8 399 25-576 9-410 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 2.3E-38 7.8E-43 335.3 24.7 409 2-535 11-437 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-35 7.2E-40 312.8 29.3 122 22-164 37-158 (457)
30 1o6v_A Internalin A; bacterial 100.0 1.1E-34 3.7E-39 310.3 33.3 345 26-434 45-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 4.6E-35 1.6E-39 313.2 30.2 342 2-384 46-388 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-35 1E-39 311.8 26.2 356 1-442 41-396 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 1.5E-35 5E-40 318.6 22.3 212 297-579 126-337 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 4.7E-34 1.6E-38 306.9 29.4 322 5-386 14-335 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-34 1.1E-38 289.1 19.6 258 299-606 50-312 (313)
36 3o6n_A APL1; leucine-rich repe 100.0 1.1E-32 3.6E-37 288.1 29.0 311 50-434 43-353 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 5.5E-33 1.9E-37 290.2 26.2 314 127-579 43-356 (390)
38 3oja_B Anopheles plasmodium-re 100.0 2.1E-32 7.2E-37 301.4 25.8 333 128-600 50-383 (597)
39 3oja_B Anopheles plasmodium-re 100.0 8.9E-32 3E-36 296.4 29.0 311 50-434 49-359 (597)
40 1ogq_A PGIP-2, polygalacturona 100.0 8E-33 2.7E-37 278.9 17.0 255 271-579 50-308 (313)
41 4fmz_A Internalin; leucine ric 100.0 3E-31 1E-35 272.6 27.2 306 24-409 41-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 9E-31 3.1E-35 269.1 29.2 304 1-360 43-346 (347)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-34 4E-39 310.5 -4.4 387 1-411 2-442 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 3E-33 1E-37 299.6 -0.4 161 272-433 143-326 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.3E-29 4.3E-34 258.5 24.2 244 271-573 78-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 2.4E-29 8E-34 256.3 26.0 247 271-575 52-306 (330)
47 1xku_A Decorin; proteoglycan, 100.0 3.1E-29 1.1E-33 255.4 26.6 285 228-572 32-329 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-29 8.9E-34 256.1 23.4 286 251-595 34-330 (332)
49 2z80_A TOLL-like receptor 2, v 100.0 4.6E-29 1.6E-33 256.6 15.7 278 252-580 33-319 (353)
50 2z66_A Variable lymphocyte rec 100.0 3.3E-28 1.1E-32 245.1 19.5 235 299-580 28-266 (306)
51 3zyi_A Leucine-rich repeat-con 100.0 1.3E-27 4.3E-32 254.5 24.7 233 299-580 75-308 (452)
52 3zyj_A Leucine-rich repeat-con 100.0 1.6E-27 5.6E-32 252.6 24.5 233 299-580 64-297 (440)
53 2z66_A Variable lymphocyte rec 100.0 4E-28 1.4E-32 244.5 17.3 275 254-580 11-292 (306)
54 4fcg_A Uncharacterized protein 100.0 1E-27 3.5E-32 243.0 18.4 227 298-575 80-314 (328)
55 1ozn_A Reticulon 4 receptor; N 100.0 8.9E-28 3E-32 239.2 17.1 229 303-581 15-244 (285)
56 3ogk_B Coronatine-insensitive 100.0 1.5E-29 5E-34 280.0 3.3 374 50-435 110-528 (592)
57 3ogk_B Coronatine-insensitive 99.9 1.5E-29 5E-34 280.0 2.5 314 198-575 188-526 (592)
58 3zyi_A Leucine-rich repeat-con 99.9 1.6E-26 5.6E-31 245.9 24.4 248 252-551 56-303 (452)
59 2z80_A TOLL-like receptor 2, v 99.9 4E-27 1.4E-31 242.2 19.0 286 25-362 29-316 (353)
60 1ozn_A Reticulon 4 receptor; N 99.9 3.9E-27 1.3E-31 234.5 18.1 236 298-581 31-267 (285)
61 3zyj_A Leucine-rich repeat-con 99.9 1.9E-26 6.4E-31 244.5 24.3 248 252-551 45-292 (440)
62 4fcg_A Uncharacterized protein 99.9 8.9E-27 3.1E-31 236.0 18.6 225 271-551 81-314 (328)
63 1wwl_A Monocyte differentiatio 99.9 1.7E-27 5.8E-32 240.1 5.6 226 301-576 65-310 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-26 1E-30 231.5 13.6 240 273-576 12-251 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-24 5.1E-29 236.2 27.5 261 229-580 42-302 (622)
66 2z62_A TOLL-like receptor 4, v 99.9 5.1E-25 1.7E-29 218.1 20.9 210 324-581 29-243 (276)
67 3g06_A SSPH2 (leucine-rich rep 99.9 2.6E-24 8.8E-29 234.3 27.1 270 82-446 41-310 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-26 1.1E-30 231.3 10.5 237 82-357 35-272 (317)
69 3oja_A Leucine-rich immune mol 99.9 2.3E-25 7.7E-30 238.1 17.5 228 289-576 24-251 (487)
70 1wwl_A Monocyte differentiatio 99.9 8.4E-27 2.9E-31 235.0 6.0 248 298-599 42-310 (312)
71 2p1m_B Transport inhibitor res 99.9 4.1E-28 1.4E-32 268.6 -4.2 414 6-433 47-519 (594)
72 2p1m_B Transport inhibitor res 99.9 7E-28 2.4E-32 266.6 -3.8 85 489-573 455-542 (594)
73 2o6q_A Variable lymphocyte rec 99.9 3.5E-24 1.2E-28 211.1 22.2 207 324-580 17-223 (270)
74 3oja_A Leucine-rich immune mol 99.9 1.3E-25 4.6E-30 239.9 11.4 236 270-570 33-270 (487)
75 1p9a_G Platelet glycoprotein I 99.9 1.1E-23 3.7E-28 209.2 19.7 207 319-579 6-212 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 5.3E-23 1.8E-27 203.6 19.9 227 6-245 11-242 (276)
77 2o6q_A Variable lymphocyte rec 99.9 2.1E-22 7.1E-27 198.3 21.7 183 53-242 38-220 (270)
78 3rfs_A Internalin B, repeat mo 99.9 2.9E-23 1E-27 204.6 13.5 221 301-581 21-241 (272)
79 3rfs_A Internalin B, repeat mo 99.9 5.7E-23 1.9E-27 202.5 14.5 208 298-563 40-247 (272)
80 1p9a_G Platelet glycoprotein I 99.9 3.2E-22 1.1E-26 198.6 19.5 202 297-552 8-209 (290)
81 3m19_A Variable lymphocyte rec 99.9 1.9E-22 6.5E-27 196.3 16.1 212 324-609 15-232 (251)
82 2ca6_A RAN GTPase-activating p 99.9 1.1E-24 3.7E-29 226.9 -0.5 236 298-579 31-320 (386)
83 3goz_A Leucine-rich repeat-con 99.9 6.1E-24 2.1E-28 218.9 3.5 130 255-384 3-151 (362)
84 4glp_A Monocyte differentiatio 99.9 7.6E-23 2.6E-27 205.9 10.7 234 272-575 65-307 (310)
85 2xwt_C Thyrotropin receptor; s 99.9 2.7E-22 9.4E-27 193.8 14.1 56 514-572 179-236 (239)
86 2ast_B S-phase kinase-associat 99.9 6.4E-23 2.2E-27 209.5 6.2 252 273-581 49-312 (336)
87 4glp_A Monocyte differentiatio 99.9 3.8E-22 1.3E-26 200.8 11.2 203 346-599 90-308 (310)
88 2xwt_C Thyrotropin receptor; s 99.9 2E-21 6.9E-26 187.6 14.6 197 27-237 31-236 (239)
89 1h6u_A Internalin H; cell adhe 99.9 4E-21 1.4E-25 192.7 16.7 194 320-576 38-231 (308)
90 2ca6_A RAN GTPase-activating p 99.9 1.5E-22 5.2E-27 210.6 6.5 242 20-267 25-320 (386)
91 3goz_A Leucine-rich repeat-con 99.9 1.8E-22 6.1E-27 207.9 6.1 265 6-291 2-304 (362)
92 2ast_B S-phase kinase-associat 99.8 1.2E-22 4.3E-27 207.3 3.1 234 271-560 70-315 (336)
93 3m19_A Variable lymphocyte rec 99.8 2.9E-20 1E-24 180.8 19.2 159 53-217 36-194 (251)
94 1h6u_A Internalin H; cell adhe 99.8 2.4E-20 8.2E-25 187.0 16.7 197 23-243 37-233 (308)
95 4ay9_X Follicle-stimulating ho 99.8 8.1E-20 2.8E-24 187.0 17.9 222 299-572 30-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 7.8E-19 2.7E-23 179.6 20.6 224 106-357 31-256 (350)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-19 5.2E-24 171.5 13.5 156 375-580 15-171 (220)
98 3cvr_A Invasion plasmid antige 99.8 1.6E-19 5.4E-24 194.1 14.6 187 300-561 60-253 (571)
99 2o6s_A Variable lymphocyte rec 99.8 3.2E-19 1.1E-23 168.2 15.0 181 5-203 10-190 (208)
100 2v9t_B SLIT homolog 2 protein 99.8 2.7E-19 9.2E-24 169.8 14.1 156 374-579 14-169 (220)
101 2o6s_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 167.8 14.9 64 493-563 127-190 (208)
102 3cvr_A Invasion plasmid antige 99.8 4.5E-19 1.6E-23 190.6 17.2 114 299-433 80-193 (571)
103 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.6E-23 166.1 15.3 157 373-580 21-177 (229)
104 1h6t_A Internalin B; cell adhe 99.8 9.9E-19 3.4E-23 173.6 12.3 82 489-576 133-214 (291)
105 2xot_A Amphoterin-induced prot 99.8 9.8E-19 3.4E-23 179.6 12.5 179 326-578 21-205 (361)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-17 3.5E-22 158.8 15.6 135 374-554 35-169 (220)
107 2v9t_B SLIT homolog 2 protein 99.8 1.1E-17 3.9E-22 158.5 15.6 152 5-167 14-165 (220)
108 1h6t_A Internalin B; cell adhe 99.8 3.2E-18 1.1E-22 169.9 12.3 172 320-552 43-214 (291)
109 1m9s_A Internalin B; cell inva 99.7 9.7E-18 3.3E-22 182.4 13.5 105 320-433 40-144 (605)
110 2xot_A Amphoterin-induced prot 99.7 1.3E-17 4.4E-22 171.3 13.5 177 253-433 21-202 (361)
111 3e6j_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 155.9 15.6 150 6-167 23-172 (229)
112 1m9s_A Internalin B; cell inva 99.7 3E-17 1E-21 178.5 15.8 125 299-434 43-167 (605)
113 1w8a_A SLIT protein; signaling 99.7 1.4E-17 4.7E-22 154.3 11.1 90 491-580 55-144 (192)
114 4ezg_A Putative uncharacterize 99.7 2.2E-17 7.5E-22 153.9 11.6 153 24-191 41-194 (197)
115 1xeu_A Internalin C; cellular 99.7 1.2E-17 4.2E-22 163.0 8.8 80 492-577 108-187 (263)
116 3sb4_A Hypothetical leucine ri 99.7 1.6E-17 5.6E-22 168.3 9.2 74 493-568 253-327 (329)
117 4ezg_A Putative uncharacterize 99.7 4.3E-17 1.5E-21 151.9 11.3 80 493-576 115-195 (197)
118 1dce_A Protein (RAB geranylger 99.7 3E-19 1E-23 193.2 -4.2 84 493-579 466-550 (567)
119 3sb4_A Hypothetical leucine ri 99.7 2.7E-17 9.4E-22 166.7 10.5 102 298-402 225-327 (329)
120 1xeu_A Internalin C; cellular 99.7 3.6E-17 1.2E-21 159.6 9.1 122 300-433 20-141 (263)
121 1w8a_A SLIT protein; signaling 99.7 1.2E-16 4.1E-21 148.0 11.7 155 374-580 11-167 (192)
122 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.3E-24 196.1 -11.5 197 24-233 346-566 (567)
123 4b8c_D Glucose-repressible alc 99.7 3.3E-17 1.1E-21 183.0 5.2 190 305-551 207-404 (727)
124 2wfh_A SLIT homolog 2 protein 99.6 8.5E-16 2.9E-20 142.1 13.1 90 491-580 55-144 (193)
125 4b8c_D Glucose-repressible alc 99.6 5.2E-17 1.8E-21 181.4 4.7 190 329-576 207-405 (727)
126 2ell_A Acidic leucine-rich nuc 99.6 7.5E-16 2.6E-20 139.5 11.2 132 27-167 24-160 (168)
127 2je0_A Acidic leucine-rich nuc 99.6 1.6E-15 5.4E-20 134.3 10.1 128 27-162 17-148 (149)
128 2ell_A Acidic leucine-rich nuc 99.6 1.6E-15 5.4E-20 137.3 9.5 84 492-575 73-160 (168)
129 2o6r_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 136.0 12.2 89 492-580 54-142 (177)
130 4fs7_A Uncharacterized protein 99.6 3.6E-14 1.2E-18 147.5 20.7 333 17-401 61-393 (394)
131 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.2E-20 134.4 8.6 129 395-571 16-149 (149)
132 4fdw_A Leucine rich hypothetic 99.6 9.8E-14 3.4E-18 143.3 23.5 273 23-383 109-382 (401)
133 4fdw_A Leucine rich hypothetic 99.6 6.3E-14 2.2E-18 144.8 19.6 219 300-574 158-382 (401)
134 2wfh_A SLIT homolog 2 protein 99.6 1.9E-14 6.6E-19 133.0 14.1 127 30-167 13-139 (193)
135 4fs7_A Uncharacterized protein 99.6 2.2E-13 7.6E-18 141.5 21.7 66 94-162 60-125 (394)
136 2o6r_A Variable lymphocyte rec 99.6 3.4E-14 1.2E-18 129.7 13.6 132 5-146 10-141 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 4E-14 1.4E-18 129.0 9.4 83 492-576 66-154 (176)
138 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 125.1 10.7 90 491-580 31-120 (170)
139 1a9n_A U2A', U2A'; complex (nu 99.5 6.1E-14 2.1E-18 127.8 8.5 135 21-167 13-153 (176)
140 1ds9_A Outer arm dynein; leuci 99.4 1.5E-15 5.3E-20 141.4 -4.3 83 489-575 92-185 (198)
141 2r9u_A Variable lymphocyte rec 99.4 3.3E-13 1.1E-17 122.2 10.7 90 491-580 34-123 (174)
142 4gt6_A Cell surface protein; l 99.4 4.3E-11 1.5E-15 124.2 25.0 130 295-432 261-390 (394)
143 1ds9_A Outer arm dynein; leuci 99.4 4.2E-15 1.4E-19 138.4 -5.7 162 319-552 14-186 (198)
144 4gt6_A Cell surface protein; l 99.4 2.8E-11 9.5E-16 125.6 20.9 127 300-432 243-369 (394)
145 3g39_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 114.1 11.4 108 29-145 11-118 (170)
146 2r9u_A Variable lymphocyte rec 99.3 8E-12 2.7E-16 113.1 11.5 106 29-143 14-119 (174)
147 3un9_A NLR family member X1; l 99.3 1.2E-13 4.2E-18 141.2 -2.0 172 347-560 72-261 (372)
148 2ifg_A High affinity nerve gro 99.2 2.1E-11 7.3E-16 124.3 10.2 85 493-578 34-119 (347)
149 3un9_A NLR family member X1; l 99.1 3.3E-12 1.1E-16 130.6 -0.3 170 51-241 71-253 (372)
150 2ifg_A High affinity nerve gro 99.1 1.1E-10 3.9E-15 118.9 10.8 101 493-595 11-113 (347)
151 4h09_A Hypothetical leucine ri 99.1 8.3E-09 2.8E-13 106.4 23.1 128 298-430 216-343 (379)
152 4h09_A Hypothetical leucine ri 99.1 2.3E-08 7.7E-13 103.1 25.6 111 314-428 208-318 (379)
153 2ra8_A Uncharacterized protein 98.7 7E-09 2.4E-13 104.9 4.5 65 177-241 251-321 (362)
154 2ra8_A Uncharacterized protein 98.6 9.3E-08 3.2E-12 96.7 9.6 144 99-265 166-322 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 6.2E-08 2.1E-12 88.3 3.5 85 82-167 66-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 6.1E-08 2.1E-12 88.3 1.8 113 271-383 36-163 (185)
157 3rw6_A Nuclear RNA export fact 98.3 4.5E-07 1.5E-11 86.7 5.2 65 488-554 168-236 (267)
158 3rw6_A Nuclear RNA export fact 98.2 1.1E-07 3.7E-12 90.9 -0.6 77 82-160 171-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 1.9E-06 6.6E-11 76.1 2.8 85 490-574 61-151 (176)
160 3e4g_A ATP synthase subunit S, 97.9 5.2E-06 1.8E-10 73.3 4.2 85 26-116 60-150 (176)
161 3rfe_A Platelet glycoprotein I 97.5 0.00011 3.9E-09 61.8 5.5 60 518-579 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 7.5E-05 2.6E-09 67.2 1.9 111 272-382 42-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00024 8.2E-09 64.0 5.0 120 22-142 36-170 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0028 9.5E-08 53.2 6.1 57 493-551 11-68 (130)
165 2lz0_A Uncharacterized protein 66.3 12 0.00042 28.9 5.8 46 311-357 8-53 (100)
166 2lz0_A Uncharacterized protein 56.2 13 0.00045 28.8 4.3 39 98-137 13-51 (100)
167 2jwa_A Receptor tyrosine-prote 52.6 1.7 5.6E-05 27.7 -1.1 24 632-655 16-39 (44)
168 2ks1_B Epidermal growth factor 52.5 2.3 7.8E-05 27.1 -0.5 7 648-654 32-38 (44)
169 2k1k_A Ephrin type-A receptor 48.5 2.9 9.9E-05 25.7 -0.5 17 630-646 13-29 (38)
170 2l2t_A Receptor tyrosine-prote 43.8 3.5 0.00012 26.2 -0.7 8 648-655 31-38 (44)
171 2l9u_A Receptor tyrosine-prote 37.2 8.8 0.0003 22.4 0.4 23 633-655 12-34 (40)
172 2klu_A T-cell surface glycopro 23.2 18 0.00062 25.0 0.1 18 633-650 12-29 (70)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.6e-71 Score=627.36 Aligned_cols=593 Identities=32% Similarity=0.470 Sum_probs=379.1
Q ss_pred CCcccEEEccCCCCceecCCc--cccCCCCCCEEecCCCCCCCccCchhh-cCCCCCCEEEccCCcCCcccchh---hhh
Q 048402 1 FIHLEYLSLRNNKLQGTIDSE--ALGNLTSISRLDLSLNTGPEGRIPRSM-ASLCNLKSINLRGVHLSQEISEI---LNI 74 (677)
Q Consensus 1 ~~~L~~L~Ls~n~~~~~i~~~--~~~~l~~L~~L~Ls~~~~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~---~~~ 74 (677)
+++|++|+|++|.+.|.+ +. .++++++|++|+++ ++.+.+..|..+ .++++|++|++++|.+++..+.. +..
T Consensus 99 l~~L~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~Ls-~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVS-SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CTTCCEEECCSSEEEEEG-GGGGGGGGCTTCCEEECC-SSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred CCCCCEEECCCCcCCCcC-CChHHHhCCCCCCEEECc-CCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 467888999999888777 55 78888888888888 666666666655 77888888888888888777665 444
Q ss_pred ccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCC
Q 048402 75 FSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLT 154 (677)
Q Consensus 75 l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~ 154 (677)
++ +|++|++++|.+++..+ +.++++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|. .+.+++
T Consensus 177 l~-----~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~ 247 (768)
T 3rgz_A 177 CG-----ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCT 247 (768)
T ss_dssp CT-----TCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCS
T ss_pred CC-----CCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCC
Confidence 44 55566555555554333 24555555555555555544444 55555555555555555544443 455555
Q ss_pred CCCEEEeeccccc----------------------eecCCCCCCC-cCccEEEeecccCCCCCChhccCCCCCCEEEccC
Q 048402 155 KLSWFRVGGNKLT----------------------LEVRHDWIPP-FQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLN 211 (677)
Q Consensus 155 ~L~~L~l~~n~l~----------------------~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 211 (677)
+|++|++++|.+. +..+..+... ++|++|++++|.+.+.+|..++.+++|++|++++
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 5555555555544 4444444332 5555555555555555555555555555555555
Q ss_pred CCCCCccchHHHhccCCccEEECCCccCccccCC-ccccc-cccEEEcccCCCCCCCCCC-----CCCccEEEccCCccc
Q 048402 212 SGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITD-LTKVT-QLLFLSVHSNNMSGPLPLI-----SSNLVYLDLSNNSFS 284 (677)
Q Consensus 212 n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~-----~~~L~~L~l~~n~l~ 284 (677)
|.+++..|...+..+++|++|++++|.+.+.++. +...+ +|+.|++++|.+.+..|.. +++|++|++++|.++
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 5555444444334455555555555555543332 22333 5555555555555444332 334566666666655
Q ss_pred ccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCC
Q 048402 285 GSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIP 364 (677)
Q Consensus 285 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 364 (677)
+.+|..+.. +++|+.|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++..|
T Consensus 408 ~~~p~~l~~----l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 408 GKIPPTLSN----CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp EECCGGGGG----CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccCHHHhc----CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 555544433 5566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccc
Q 048402 365 VSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNIT 444 (677)
Q Consensus 365 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 444 (677)
..+.++++|++|++++|++.+.+|.++. .+++|++|++++|++++.+|..+..+++|+.|++++|++.|.+|..+....
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 6666666666666666666656665554 466666666666666666666666666666666666666666666555544
Q ss_pred cCccccccCcccCccCCC-C-------------CCCcc-----cc-----cceeeEeecCCchhhhhhhccccEEEcccC
Q 048402 445 GMVAANSFTRSSQQYLPL-P-------------LDGDV-----IL-----TEKASVVSEGEAIEYDEILNLVKETDVSRN 500 (677)
Q Consensus 445 ~l~~~~~~~~~~~~~~~~-~-------------~~~~~-----~~-----~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 500 (677)
.+................ . +.+.. .. .........+..+..+..+++|+.||+++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 443322211000000000 0 00000 00 000001112333445566889999999999
Q ss_pred cccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402 501 NLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 501 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
+++|.+|..++++++|+.|+|++|+++|.+|+.++++++|++|||++|++++.+|..++.+++|++||+++|+++|.+|.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCcccccCC-CCCCCCCCCCCCCCC
Q 048402 581 STQLQSFDASSFTGN-DLCGAPLPKNCAENV 610 (677)
Q Consensus 581 ~~~~~~l~~~~~~~n-~l~~~~~~~~c~~~~ 610 (677)
..++.++...+|.|| .+||.|+. .|....
T Consensus 723 ~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 723 MGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred chhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 999999999999999 89999987 886443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-65 Score=581.12 Aligned_cols=580 Identities=27% Similarity=0.339 Sum_probs=316.5
Q ss_pred cccEEEccCCCCcee---cCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccch--hhhhccc
Q 048402 3 HLEYLSLRNNKLQGT---IDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISE--ILNIFSG 77 (677)
Q Consensus 3 ~L~~L~Ls~n~~~~~---i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~ 77 (677)
+++.|+|+++.+.|. + +.++.++++|+.++++ .+... .+|..++++++|++|+|++|.+++.+|. .++.++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l-~~~l~~L~~L~~l~~~-~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~- 126 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAV-SSSLLSLTGLESLFLS-NSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS- 126 (768)
T ss_dssp EEEEEECTTSCCCEEHHHH-HHHTTTCTTCCEEECT-TSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT-
T ss_pred cEEEEECCCCCcCCccCcc-ChhHhccCcccccCCc-CCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCC-
Confidence 466777777777766 5 4455556666666555 32221 2334555666666666666666555555 555555
Q ss_pred cCcCCccEEEcccCcCcccccccc-CCCCCCCEEECcCCccccCCCcC---CCCCCCCCEEEccccccccccChhhhhCC
Q 048402 78 CVSIELESLDLRSSSISGHLTDQL-GQFKNLDNLDLANNSIVGPIPQS---LGHLSNLRVLQIYNNKLNGTLSEIHFSNL 153 (677)
Q Consensus 78 ~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~i~~~l~~~~~~~l 153 (677)
+|++|++++|.+++..|..+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+ +.++
T Consensus 127 ----~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l 199 (768)
T 3rgz_A 127 ----GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRC 199 (768)
T ss_dssp ----TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTC
T ss_pred ----CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccC
Confidence 56666666665555544443 55555666666666555544444 4555555555555555553332 2455
Q ss_pred CCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEE
Q 048402 154 TKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLD 233 (677)
Q Consensus 154 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~ 233 (677)
++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|.. .+++|++|+
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~ 275 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLS 275 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEE
T ss_pred CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEE
Confidence 5555555555555544443 555555555555555555555555555555555555555554443332 344555555
Q ss_pred CCCccCccccCCc-ccc-ccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCC
Q 048402 234 LGLNQFHGQITDL-TKV-TQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD 308 (677)
Q Consensus 234 Ls~n~l~~~~~~~-~~~-~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 308 (677)
+++|.+.+.++.. ... ++|+.|++++|.+++..|.. +++|++|++++|.+++.+|... +..+++|++|++++
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~---l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSF 352 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH---HTTCTTCCEEECCS
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH---HhcCCCCCEEeCcC
Confidence 5555554333322 222 45555555555544444332 3444555555555444443321 12244444444444
Q ss_pred CCCcccCCcccccCC-CCceecccCccccccCCcCcCC--CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccc
Q 048402 309 NSLQGEIPDCWMSYQ-NLEILELSNNKFTGKLPNSLGS--LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG 385 (677)
Q Consensus 309 n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 385 (677)
|.+.+.+|..+..++ +|++|++++|.+++..|..+.. +++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 444444444444443 4444444444444444443333 3444444444444444444444444444444444444444
Q ss_pred cCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCC
Q 048402 386 NIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLD 465 (677)
Q Consensus 386 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 465 (677)
.+|..+. .+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++++|+.++...+...+..|..+.
T Consensus 433 ~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 433 TIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp CCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 4443332 344444444444444444444444444444444444444444444444444444444443333333222221
Q ss_pred Ccccccceee--EeecCCchhhhhhhccccEEEcccCccc----------------------------------------
Q 048402 466 GDVILTEKAS--VVSEGEAIEYDEILNLVKETDVSRNNLT---------------------------------------- 503 (677)
Q Consensus 466 ~~~~~~~~~~--~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---------------------------------------- 503 (677)
....+..... ....+..+..+..+++|+.|++++|+++
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence 1111000000 0001122233344455555555555554
Q ss_pred ------------------------------ccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccccc
Q 048402 504 ------------------------------KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGE 553 (677)
Q Consensus 504 ------------------------------~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 553 (677)
|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|++++.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence 44455566678999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCEEEcccCcccccCCCC-CCCCCcCcccccCCCCCCCC
Q 048402 554 IPQSMSNLMSLNHLNLSNNKLTGKIPSS-TQLQSFDASSFTGNDLCGAP 601 (677)
Q Consensus 554 ~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~ 601 (677)
+|+.++++++|++||+++|+++|.+|.. ..+..+..+++++|.+.|..
T Consensus 672 ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred CChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 9999999999999999999999999975 66778889999999887753
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-57 Score=511.32 Aligned_cols=569 Identities=20% Similarity=0.210 Sum_probs=304.7
Q ss_pred CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402 2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI 81 (677)
Q Consensus 2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~ 81 (677)
+++++|+|++|.++ .+++..|.++++|++|+++ ++.+.+..|.+++++++|++|++++|.+++..+..|+.++
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~----- 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT----- 97 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECC-SSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT-----
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECC-CCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC-----
Confidence 46778888888777 4546667778888888887 6667777777777888888888888877766666677777
Q ss_pred CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhh--CCCCCCEE
Q 048402 82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFS--NLTKLSWF 159 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~--~l~~L~~L 159 (677)
+|++|++++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.++ .++...+. .+++|+.|
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTCEESEE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccc-ccCHHHhhccccccccEE
Confidence 7888888888777666677778888888888888777777777777888888888888776 34433443 45778888
Q ss_pred EeeccccceecCCCCCCCcCccEEEeecccCCCCCChhcc---CCCCCCEEEccCCCCCCccchHHHhcc--CCccEEEC
Q 048402 160 RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLH---SQKHLQYLNLLNSGMSDLFPIRFLKSA--FQLKFLDL 234 (677)
Q Consensus 160 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L~L 234 (677)
++++|.+++..+..+..+.+|+.+++.++.+.......+. ..++|++|++++|.+++..+..+.. + ++|++|++
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~L 255 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDL 255 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEEC
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEEC
Confidence 8888877776666665555554444444333211111000 1244555555555555544433322 2 22555555
Q ss_pred CCccCccccCC-ccccccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccC-----ChhHhhccCCCCCcCeEe
Q 048402 235 GLNQFHGQITD-LTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSV-----SHYLCYRINEPKSLIGLK 305 (677)
Q Consensus 235 s~n~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~-----~~~~~~~~~~~~~L~~L~ 305 (677)
++|.+.+..+. +..+++|+.|++++|.+.+..+.. +++|+.|++++|...+.+ |..-...+..+++|++|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 55555544432 333455555555555555444332 345555555554333211 111111233455555555
Q ss_pred cCCCCCcccCCcccccCCCCceecccCcccc--ccCCcCcCCC--CCccEEECcCCcccccCCccCcCCCCCCEEecCCC
Q 048402 306 LKDNSLQGEIPDCWMSYQNLEILELSNNKFT--GKLPNSLGSL--TSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381 (677)
Q Consensus 306 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 381 (677)
+++|.+.+..+..|.++++|++|++++|.+. ......|..+ ++|+.|++++|++++..|.+|..+++|++|++++|
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 5555555555555555555555555555432 1112222222 34555555555555555555555555555555555
Q ss_pred cccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC--CCcCccccccccCccccccCcccCcc
Q 048402 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF--GTIPKCINNITGMVAANSFTRSSQQY 459 (677)
Q Consensus 382 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~l~~~~~~~~~~~~~ 459 (677)
.+.+.+|...+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+.++++|+.++...+.....
T Consensus 416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i 495 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495 (680)
T ss_dssp CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC
Confidence 5555555444445555555555555555555555555555555555555553 34455555555555555444433222
Q ss_pred CCCCCCCccccccee----------eEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceee
Q 048402 460 LPLPLDGDVILTEKA----------SVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR 529 (677)
Q Consensus 460 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 529 (677)
.+..+.....+.... .....+.....+..+++|+.|++++|+++...+..|.++++|++|++++|++++.
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence 111111000000000 0000000011233344555555555555533333455555555555555555543
Q ss_pred cccccccCCCCcEEECCCCcccccCccccc-cCCCCCEEEcccCcccccCC
Q 048402 530 IPESIGAMRSLESIDFSVNQLSGEIPQSMS-NLMSLNHLNLSNNKLTGKIP 579 (677)
Q Consensus 530 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p 579 (677)
.+..|.++++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++
T Consensus 576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 334445555555555555555544444444 44555555555555555544
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4e-56 Score=500.81 Aligned_cols=521 Identities=20% Similarity=0.224 Sum_probs=423.3
Q ss_pred CCcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCc
Q 048402 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVS 80 (677)
Q Consensus 1 ~~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 80 (677)
+++|++|+|++|.++ .+++.+|.++++|++|+++ ++.+.+..+.+|+++++|++|++++|.+++..+..++.++
T Consensus 48 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---- 121 (680)
T 1ziw_A 48 YSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQ-HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK---- 121 (680)
T ss_dssp GTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT----
T ss_pred CCcCcEEECCCCccC-ccCHHHHhcccCcCEEECC-CCccCccChhhhccCCCCCEEECCCCccCccChhHccccC----
Confidence 478999999999998 4448889999999999999 7777766556799999999999999999988888899999
Q ss_pred CCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCC--CCCCCCEEEccccccccccChhhhhCC-----
Q 048402 81 IELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLG--HLSNLRVLQIYNNKLNGTLSEIHFSNL----- 153 (677)
Q Consensus 81 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~l~~~~~~~l----- 153 (677)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+. .+..+
T Consensus 122 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~ 199 (680)
T 1ziw_A 122 -NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFG 199 (680)
T ss_dssp -TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECE
T ss_pred -CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhh
Confidence 999999999999988899999999999999999999877666554 568999999999999854443 55544
Q ss_pred ----------------------CCCCEEEeeccccceecCCCCCCCcC--ccEEEeecccCCCCCChhccCCCCCCEEEc
Q 048402 154 ----------------------TKLSWFRVGGNKLTLEVRHDWIPPFQ--LVALGFHNCYVGSRFPQWLHSQKHLQYLNL 209 (677)
Q Consensus 154 ----------------------~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 209 (677)
++|+.|++++|.+.+..+..+..+.. |+.|++++|.+.+..|.+++.+++|++|++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 56777888888888887777877654 999999999988888888889999999999
Q ss_pred cCCCCCCccchHHHhccCCccEEECCCccCccc-----cC-----CccccccccEEEcccCCCCCCCCCC---CCCccEE
Q 048402 210 LNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ-----IT-----DLTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYL 276 (677)
Q Consensus 210 ~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~-----~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L 276 (677)
++|.+++..+..+ ..+++|++|++++|...+. ++ .+..+++|+.|++++|.+.+..+.. +++|++|
T Consensus 280 ~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 358 (680)
T 1ziw_A 280 EYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358 (680)
T ss_dssp CSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred CCCccCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence 9998888766555 5578899999987755432 11 3455688999999999988876643 6788999
Q ss_pred EccCCcccccCC--hhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCC-cCcCCCCCccEEE
Q 048402 277 DLSNNSFSGSVS--HYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP-NSLGSLTSLIWLL 353 (677)
Q Consensus 277 ~l~~n~l~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 353 (677)
++++|.+..... ..+.. + ..++|+.|++++|.+.+..|.+|..+++|++|++++|.+.+.+| ..|.++++|+.|+
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~-~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVS-L-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436 (680)
T ss_dssp ECTTCBSCCCEECTTTTGG-G-TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEE
T ss_pred ECCCCchhhhhcchhhhcc-c-ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEe
Confidence 999887543221 11111 1 13678999999999988888889999999999999999887665 6788899999999
Q ss_pred CcCCcccccCCccCcCCCCCCEEecCCCccc--ccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCc
Q 048402 354 LGKNRLSGTIPVSLKNCTALESLDVGENEFV--GNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNN 431 (677)
Q Consensus 354 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 431 (677)
+++|++++..+..|..+++|+.|++++|.+. +.+|..+. .+++|++|++++|++++..+..+.++++|++|++++|+
T Consensus 437 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp CCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC
Confidence 9999998888888999999999999999876 45666554 78899999999999998777888899999999999998
Q ss_pred CCCCcC--------ccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCccc
Q 048402 432 LFGTIP--------KCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT 503 (677)
Q Consensus 432 l~~~~p--------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 503 (677)
+++..+ ..+.++++|+.++...+...... ...+..+++|+.|++++|+++
T Consensus 516 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~----------------------~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP----------------------VEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCC
T ss_pred ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC----------------------HHHcccccCcceeECCCCCCC
Confidence 875322 23677777877776665443221 223456889999999999999
Q ss_pred ccCCcccCCCCCCcEEeccCCcceeecccccc-cCCCCcEEECCCCcccccCc
Q 048402 504 KSIPLEMTNLKATQSLNFSHNSFTGRIPESIG-AMRSLESIDFSVNQLSGEIP 555 (677)
Q Consensus 504 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p 555 (677)
+..+..|.++++|+.|++++|++++..|..+. .+++|+.|++++|.+...-+
T Consensus 574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 88888899999999999999999988888887 79999999999999986543
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-55 Score=489.45 Aligned_cols=519 Identities=21% Similarity=0.175 Sum_probs=389.4
Q ss_pred CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402 2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI 81 (677)
Q Consensus 2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~ 81 (677)
+++++|+|++|.++ .+++.+|.++++|++|+++ ++.+.+..|.+|.++++|++|++++|.+++..|..++.++
T Consensus 33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----- 105 (606)
T 3t6q_A 33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLT-RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK----- 105 (606)
T ss_dssp TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT-----
T ss_pred CcCcEEEccCCccC-cCChhHhccCccceEEECC-CCccceeChhhccCccccCeeeCCCCcccccChhhhcccc-----
Confidence 35677777777777 4446677777777777777 6666666677777777777777777777777777777777
Q ss_pred CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCC--EE
Q 048402 82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLS--WF 159 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~--~L 159 (677)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.++ .++...++.+++|+ .|
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEE
Confidence 7777777777777666667777777777777777777544444555777777777777776 44444677777777 77
Q ss_pred EeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCC-----CccchHHHhccC--CccEE
Q 048402 160 RVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMS-----DLFPIRFLKSAF--QLKFL 232 (677)
Q Consensus 160 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~-----~~~~~~~~~~~~--~L~~L 232 (677)
++++|.+.+..+..+.. ..++.+++++|. ..+..+..+.+++...+....+. ...+. .+..+. +++.+
T Consensus 185 ~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~-~~~~l~~~~L~~L 259 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA-VFEGLCEMSVESI 259 (606)
T ss_dssp ECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG-GGGGGGGSEEEEE
T ss_pred ecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChh-HhchhhcCceeEE
Confidence 77777777766655544 467777777664 23344444444433333222211 11111 112222 68888
Q ss_pred ECCCccCccccCC-ccccccccEEEcccCCCCCCCCC--CCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCC
Q 048402 233 DLGLNQFHGQITD-LTKVTQLLFLSVHSNNMSGPLPL--ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDN 309 (677)
Q Consensus 233 ~Ls~n~l~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 309 (677)
++++|.+.+..+. +..+++|+.|++++|.++...+. .+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n 335 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS----NFPSLTHLSIKGN 335 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG----GCTTCSEEECCSC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhh----ccCcCCEEECCCC
Confidence 8888888877665 55568888888888888743332 257888899998888866555443 3788999999998
Q ss_pred CCcccCCc-ccccCCCCceecccCccccccC--CcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCccccc
Q 048402 310 SLQGEIPD-CWMSYQNLEILELSNNKFTGKL--PNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGN 386 (677)
Q Consensus 310 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 386 (677)
.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|+.|++++|++.+..|..|..+++|++|++++|++.+.
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 88765544 4888889999999998888665 67788888999999999988888888888889999999999988866
Q ss_pred CChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCC
Q 048402 387 IPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDG 466 (677)
Q Consensus 387 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 466 (677)
.+...+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------------- 468 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK--------------------------- 468 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS---------------------------
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc---------------------------
Confidence 66554557888999999999888888888888889999999998886421100
Q ss_pred cccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECC
Q 048402 467 DVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFS 546 (677)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 546 (677)
...+..+++|+.|++++|++++..|..|.++++|++|++++|++++..|+.+.++++| .|+++
T Consensus 469 ----------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 469 ----------------TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp ----------------SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred ----------------chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence 1122345667999999999999999999999999999999999999999999999999 99999
Q ss_pred CCcccccCccccccCCCCCEEEcccCcccccCCCC
Q 048402 547 VNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS 581 (677)
Q Consensus 547 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 581 (677)
+|++++..|+.+..+++|++|++++|++.|.++..
T Consensus 532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp SSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 99999988999999999999999999999988753
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-54 Score=482.87 Aligned_cols=507 Identities=18% Similarity=0.138 Sum_probs=326.9
Q ss_pred EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccE
Q 048402 6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELES 85 (677)
Q Consensus 6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~ 85 (677)
+++.+++.++ .+ |..+. ++|++|+++ ++.+.+..+.+|.++++|++|++++|.+++..|..|..++ +|++
T Consensus 15 ~~~c~~~~l~-~i-p~~~~--~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~-----~L~~ 84 (606)
T 3vq2_A 15 TYQCMDQKLS-KV-PDDIP--SSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH-----HLSN 84 (606)
T ss_dssp EEECTTSCCS-SC-CTTSC--TTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-----TCCE
T ss_pred ceEccCCCcc-cC-CCCCC--CCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchh-----hcCE
Confidence 4455555554 44 22221 455555555 4444444444555555555555555555555555555555 5555
Q ss_pred EEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEcccccccc-ccChhhhhCCCCCCEEEeecc
Q 048402 86 LDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG-TLSEIHFSNLTKLSWFRVGGN 164 (677)
Q Consensus 86 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~l~~~~~~~l~~L~~L~l~~n 164 (677)
|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|. .++++++|++|++++|
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYN 163 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSS
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCC
Confidence 5555555555445555555555555555555554444555555555555555555542 2343 4555555555555555
Q ss_pred ccceecCCCCCCCcCcc----EEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCcc----------
Q 048402 165 KLTLEVRHDWIPPFQLV----ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLK---------- 230 (677)
Q Consensus 165 ~l~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~---------- 230 (677)
.+++..+..+..+.+++ .+++++|.+.+..+..+... +|++|++++|.+++......+..++.++
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred cceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 55555444444444332 45555555554444333333 4555555555544322222223344444
Q ss_pred ----------------------EEEC-CCccCccccCCccccccccEEEcccCCCCCCCCC-CCCCccEEEccCCccccc
Q 048402 231 ----------------------FLDL-GLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPL-ISSNLVYLDLSNNSFSGS 286 (677)
Q Consensus 231 ----------------------~L~L-s~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~l~~~ 286 (677)
.+++ ..+.+.+..+.+..+++|+.+++++|.+...... .+++|++|++++|.+ +.
T Consensus 243 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp TSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SS
T ss_pred cCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cc
Confidence 4444 5566666666666667788888887777554311 156777888888877 44
Q ss_pred CChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCcccccc--CCcCcCCCCCccEEECcCCcccccCC
Q 048402 287 VSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK--LPNSLGSLTSLIWLLLGKNRLSGTIP 364 (677)
Q Consensus 287 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~ 364 (677)
+|.. .+++|++|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++ .|
T Consensus 322 lp~~------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~ 392 (606)
T 3vq2_A 322 FPTL------DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392 (606)
T ss_dssp CCCC------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC
T ss_pred cccC------CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch
Confidence 4421 3677888888877544333 456777888888888877754 36667777788888888887774 44
Q ss_pred ccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCC-cCcccccc
Q 048402 365 VSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGT-IPKCINNI 443 (677)
Q Consensus 365 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l 443 (677)
..+..+++|++|++++|++.+..|...+..+++|++|++++|.+++..|..+..+++|++|++++|++.+. +|..+..+
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 67777788888888888777655533444677888888888887777777777778888888888877653 45555544
Q ss_pred ccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccC
Q 048402 444 TGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSH 523 (677)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 523 (677)
++|++|++++|++++..|..+.++++|++|++++
T Consensus 473 ----------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 473 ----------------------------------------------TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp ----------------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ----------------------------------------------CCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 4459999999999998899999999999999999
Q ss_pred CcceeecccccccCCCCcEEECCCCcccccCccccccCC-CCCEEEcccCcccccCCCC
Q 048402 524 NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLM-SLNHLNLSNNKLTGKIPSS 581 (677)
Q Consensus 524 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~ 581 (677)
|++++..|..|.++++|++|++++|+++ .+|..+..++ +|++|++++|++.|.++..
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999888999999999999999999998 6777788887 5999999999999988764
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-55 Score=500.98 Aligned_cols=554 Identities=19% Similarity=0.151 Sum_probs=383.5
Q ss_pred EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCccc-chhhhhccccCcCCcc
Q 048402 6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEI-SEILNIFSGCVSIELE 84 (677)
Q Consensus 6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~~~L~ 84 (677)
..+.++++++ .+ |. -.++|++|+|+ ++.+.+..|..|.++++|++|++++|...+.+ |..|..++ +|+
T Consensus 8 ~~dcs~~~L~-~v-P~---lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-----~L~ 76 (844)
T 3j0a_A 8 IAFYRFCNLT-QV-PQ---VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-----NLR 76 (844)
T ss_dssp EEEESCCCSS-CC-CS---SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-----TCC
T ss_pred EEEccCCCCC-CC-CC---CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCC-----CCC
Confidence 5666777776 55 33 34677788887 66677666777777778888888777554444 66677777 778
Q ss_pred EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcC--CCCCCCCCEEEccccccccccChhhhhCCCCCCEEEee
Q 048402 85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQS--LGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG 162 (677)
Q Consensus 85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~ 162 (677)
+|+|++|.+++..|..|.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+...|+++++|+.|+++
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 8888877777777777777778888888877777655544 77777888888887777644443467777788888888
Q ss_pred ccccceecCCCCCCC--cCccEEEeecccCCCCCChhccCCCC------CCEEEccCCCCCCccchHHHhcc--CCccEE
Q 048402 163 GNKLTLEVRHDWIPP--FQLVALGFHNCYVGSRFPQWLHSQKH------LQYLNLLNSGMSDLFPIRFLKSA--FQLKFL 232 (677)
Q Consensus 163 ~n~l~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~l~~------L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L 232 (677)
+|.+++..+..+..+ ++|+.|++++|.+.+..|..+..+++ |++|++++|.+++..+..+.... .+++.+
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 777777666666655 67777778777777766666655554 77888888777666555554322 356667
Q ss_pred ECCCccCc---------ccc-CCccc--cccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCC
Q 048402 233 DLGLNQFH---------GQI-TDLTK--VTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINE 297 (677)
Q Consensus 233 ~Ls~n~l~---------~~~-~~~~~--~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 297 (677)
.++.+... ... ..+.. .++++.|++++|.+.+..+.. +++|+.|++++|.+++..+..+ ..
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~ 312 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF----YG 312 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT----TT
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh----cC
Confidence 66533221 111 11112 257788888888777665543 5677888888888876665543 34
Q ss_pred CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD 377 (677)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 377 (677)
+++|++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+++. ..+++|+.|+
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~ 387 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIF 387 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEE
T ss_pred CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhc
Confidence 77888888888888777777788888888888888888776677777888888888888877632 2367788888
Q ss_pred cCCCcccccCChhhhhccCCceEEEcCCCcccccC-CccccCCCCCCEEeCCCCcCCCCcCc-cccccccCccccccCcc
Q 048402 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPL-PTRLCDLAFLQILDLADNNLFGTIPK-CINNITGMVAANSFTRS 455 (677)
Q Consensus 378 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~l~~~~~~~~~ 455 (677)
+++|++. .+|.. ...++.|++++|++.+.. +..+..+++|+.|++++|++++..+. .+..+++|+.++...+.
T Consensus 388 l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 388 LSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp EESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred cCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCc
Confidence 8888776 55543 456777888888777532 22345777888888888877654332 34445566555554443
Q ss_pred cCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccc
Q 048402 456 SQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIG 535 (677)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 535 (677)
.....+ .+.....+..+++|+.|+|++|++++.+|..|.++++|++|+|++|++++..|..+.
T Consensus 463 l~~~~~-----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 463 LQLAWE-----------------TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp CSSSCC-----------------SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred cccccc-----------------cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 321111 011123345578889999999999998888899999999999999999977666666
Q ss_pred cCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCCCCCCCCCCCCCCC
Q 048402 536 AMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCAEN 609 (677)
Q Consensus 536 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~~~~c~~~ 609 (677)
++|+.|++++|++++..|+.| .+|+.+++++|++.|.|+......++. -....++|.|....|..+
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~~---~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWLN---HTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHHH---HTTTTTCCCGGGCCCSSC
T ss_pred --ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHHHH---hcCcccccccccCccCCc
Confidence 899999999999998888776 478899999999999887543222211 111256666666677544
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-53 Score=471.47 Aligned_cols=529 Identities=17% Similarity=0.168 Sum_probs=413.9
Q ss_pred cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402 5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84 (677)
Q Consensus 5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~ 84 (677)
++++.++..++ .+ |..+. +++++|+++ ++.+++..|.+|.++++|++|++++|.+++..|..|..++ +|+
T Consensus 15 ~~~~c~~~~l~-~i-P~~l~--~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----~L~ 84 (606)
T 3t6q_A 15 KTYNCENLGLN-EI-PGTLP--NSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH-----RLD 84 (606)
T ss_dssp TEEECTTSCCS-SC-CTTSC--TTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCT-----TCC
T ss_pred ceEECCCCCcc-cC-cCCCC--CcCcEEEcc-CCccCcCChhHhccCccceEEECCCCccceeChhhccCcc-----ccC
Confidence 46777777777 66 54443 478899998 7777777788888889999999998888888888888888 899
Q ss_pred EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402 85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164 (677)
Q Consensus 85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n 164 (677)
+|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ ++...+..+++|+.|++++|
T Consensus 85 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 85 TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp EEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSS
T ss_pred eeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccC
Confidence 99999998888888888888999999999998887667888888899999999888873 32224556888889998888
Q ss_pred ccceecCCCCCCCcCcc--EEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc-
Q 048402 165 KLTLEVRHDWIPPFQLV--ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG- 241 (677)
Q Consensus 165 ~l~~~~~~~~~~~~~L~--~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~- 241 (677)
.+++..+..+..+.+++ .|++++|.+.+..|..+.. .+|++|++++|.. .+. .+..+..+....+....+..
T Consensus 164 ~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTS
T ss_pred cccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHH-Hhhhccccchhheechhhccc
Confidence 88877777777788887 7888888888777766554 5788888888752 122 22333433333322221111
Q ss_pred ----ccC-Ccccc--ccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCC
Q 048402 242 ----QIT-DLTKV--TQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSL 311 (677)
Q Consensus 242 ----~~~-~~~~~--~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 311 (677)
..+ .+... .+++.+++++|.+.+..+.. +++|++|++++|.++. +|. .+..+++|++|++++|.+
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~----~l~~l~~L~~L~l~~n~l 313 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPS----GLVGLSTLKKLVLSANKF 313 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCS----SCCSCTTCCEEECTTCCC
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-CCh----hhcccccCCEEECccCCc
Confidence 001 11111 37889999999988876653 6789999999998873 343 345588999999999999
Q ss_pred cccCCcccccCCCCceecccCccccccCCc-CcCCCCCccEEECcCCcccccC--CccCcCCCCCCEEecCCCcccccCC
Q 048402 312 QGEIPDCWMSYQNLEILELSNNKFTGKLPN-SLGSLTSLIWLLLGKNRLSGTI--PVSLKNCTALESLDVGENEFVGNIP 388 (677)
Q Consensus 312 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~ 388 (677)
.+..|..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|++++.. +..+..+++|++|++++|++.+..|
T Consensus 314 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 888788889999999999999988865554 4888999999999999988765 6778899999999999999886656
Q ss_pred hhhhhccCCceEEEcCCCcccccCCc-cccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCc
Q 048402 389 TWTGERFSRMVVLILRSNNFHGPLPT-RLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGD 467 (677)
Q Consensus 389 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 467 (677)
..+. .+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++
T Consensus 394 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---------------------- 450 (606)
T 3t6q_A 394 EAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA---------------------- 450 (606)
T ss_dssp TTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT----------------------
T ss_pred HHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC----------------------
Confidence 5544 788999999999999876554 4888999999999999988777766655444
Q ss_pred ccccceeeEeecCCchhhhhhhccccEEEcccCccccc---CCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEE
Q 048402 468 VILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKS---IPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESID 544 (677)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 544 (677)
|++|++++|++++. .+..+..+++|++|++++|++++..|..|+++++|++|+
T Consensus 451 ------------------------L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 451 ------------------------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp ------------------------CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ------------------------CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 59999999999873 336799999999999999999988899999999999999
Q ss_pred CCCCcccccCccccccCCCCCEEEcccCcccccCCCC-CCCCCcCcccccCCCCCCCCCCCCCC
Q 048402 545 FSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS-TQLQSFDASSFTGNDLCGAPLPKNCA 607 (677)
Q Consensus 545 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~~~~~c~ 607 (677)
+++|++++..|+.+..++.| +|++++|++++..|.. ..+..++.+++.+ +|+.|+|.
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-----N~~~c~c~ 564 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ-----NPLDCTCS 564 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT-----CCEECSGG
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC-----CCccccCC
Confidence 99999999999999999999 9999999999877763 3445566666655 56667774
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-52 Score=463.88 Aligned_cols=486 Identities=18% Similarity=0.156 Sum_probs=421.9
Q ss_pred CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402 2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI 81 (677)
Q Consensus 2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~ 81 (677)
+++++|+|++|.++ .+++..|.++++|++|+++ ++.+.+..|.+|.++++|++|++++|.+++..|..++.++
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~----- 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT----- 104 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT-----
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCC-CCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc-----
Confidence 57999999999998 5557799999999999999 7788888888999999999999999999999899999999
Q ss_pred CccEEEcccCcCccccccccCCCCCCCEEECcCCcccc-CCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCC---
Q 048402 82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG-PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLS--- 157 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~--- 157 (677)
+|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+. .++.+.+|+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~~l 183 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN-DLQFLRENPQVN 183 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-TTHHHHHCTTCC
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-hhhhhhcccccc
Confidence 99999999999998887889999999999999999986 5699999999999999999999854443 676666554
Q ss_pred -EEEeeccccceecCCCCCCCcCccEEEeecccCC-CCCChhccCCCCCCEEEc--------------------------
Q 048402 158 -WFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVG-SRFPQWLHSQKHLQYLNL-------------------------- 209 (677)
Q Consensus 158 -~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l-------------------------- 209 (677)
.+++++|.++...+..+... +|+.|++++|.+. ...|.++.++++++.+++
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred ceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 89999999998877777666 8999999999876 456677777887777666
Q ss_pred -------cCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCC-CCCCccEEEccCC
Q 048402 210 -------LNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPL-ISSNLVYLDLSNN 281 (677)
Q Consensus 210 -------~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n 281 (677)
..+.+.+..+. +..+++|+.|++++|.+.... .+..+++|+.|++++|.+. .+|. .+++|++|++++|
T Consensus 263 l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n 338 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESC
T ss_pred Hhheeccccccccccccc--cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCc-ccccCCCCccceeeccCC
Confidence 44555555554 466789999999999997544 7777899999999999994 4443 5889999999999
Q ss_pred cccccCChhHhhccCCCCCcCeEecCCCCCccc--CCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcc
Q 048402 282 SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE--IPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRL 359 (677)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 359 (677)
...+.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++ .|..+..+++|+.|++++|++
T Consensus 339 ~~~~~~------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 339 KGSISF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp SSCEEC------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEE
T ss_pred cCccch------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCcc
Confidence 665443 345689999999999999866 48889999999999999999985 668899999999999999999
Q ss_pred cccCC-ccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccc-cCCccccCCCCCCEEeCCCCcCCCCcC
Q 048402 360 SGTIP-VSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG-PLPTRLCDLAFLQILDLADNNLFGTIP 437 (677)
Q Consensus 360 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p 437 (677)
.+..+ ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|
T Consensus 412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred CCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 98877 6899999999999999999977777665 79999999999999997 478899999999999999999998777
Q ss_pred ccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCc
Q 048402 438 KCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQ 517 (677)
Q Consensus 438 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 517 (677)
..+.++++| ++|++++|++++..|..+.++++|+
T Consensus 491 ~~~~~l~~L----------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 491 GVFDTLHRL----------------------------------------------QLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp TTTTTCTTC----------------------------------------------CEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred hhhcccccC----------------------------------------------CEEECCCCcCCCcCHHHccCCCcCC
Confidence 776665554 9999999999999999999999999
Q ss_pred EEeccCCcceeecccccccCC-CCcEEECCCCcccccCc
Q 048402 518 SLNFSHNSFTGRIPESIGAMR-SLESIDFSVNQLSGEIP 555 (677)
Q Consensus 518 ~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p 555 (677)
+|++++|+++ .+|..+..++ +|++|++++|.+....+
T Consensus 525 ~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 525 TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9999999999 6787799997 69999999999985443
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-50 Score=463.93 Aligned_cols=523 Identities=18% Similarity=0.179 Sum_probs=428.5
Q ss_pred CEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccc-ccccCCCCCCC
Q 048402 30 SRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHL-TDQLGQFKNLD 108 (677)
Q Consensus 30 ~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 108 (677)
+..+.+ ++.++ .+|. -.++|++|+|++|.+++..+..+..++ +|++|++++|...+.+ |.+|.++++|+
T Consensus 7 ~~~dcs-~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~-----~L~~LdLs~n~~~~~i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 7 RIAFYR-FCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLE-----QLQLLELGSQYTPLTIDKEAFRNLPNLR 76 (844)
T ss_dssp EEEEES-CCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCC-----SCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred eEEEcc-CCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccc-----cCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence 356676 55555 4554 457899999999999999899999999 9999999999665554 88999999999
Q ss_pred EEECcCCccccCCCcCCCCCCCCCEEEccccccccccCh-hhhhCCCCCCEEEeeccccceecC-CCCCCCcCccEEEee
Q 048402 109 NLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSE-IHFSNLTKLSWFRVGGNKLTLEVR-HDWIPPFQLVALGFH 186 (677)
Q Consensus 109 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~ 186 (677)
+|+|++|.+++..|.+|.++++|++|++++|.+++.++. ..|.++++|++|++++|.+++..+ ..|..+++|++|+++
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 999999999988899999999999999999999865554 348999999999999999988765 478999999999999
Q ss_pred cccCCCCCChhccCC--CCCCEEEccCCCCCCccchHHHhccC------CccEEECCCccCccccCCcc----ccccccE
Q 048402 187 NCYVGSRFPQWLHSQ--KHLQYLNLLNSGMSDLFPIRFLKSAF------QLKFLDLGLNQFHGQITDLT----KVTQLLF 254 (677)
Q Consensus 187 ~n~~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~~~~------~L~~L~Ls~n~l~~~~~~~~----~~~~L~~ 254 (677)
+|.+.+..+..+..+ ++|+.|++++|.+.+..+..+. .++ .|+.|++++|.+.+..+... ...+++.
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~ 235 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence 999999999998877 8999999999999886655432 122 49999999998876554332 2367888
Q ss_pred EEcccCCCC---------CCCCC-----CCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc
Q 048402 255 LSVHSNNMS---------GPLPL-----ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM 320 (677)
Q Consensus 255 L~l~~n~~~---------~~~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 320 (677)
+.+..+... +.... ..++|+.|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..|.
T Consensus 236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~~~~~~~~ 311 (844)
T 3j0a_A 236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV----FETLKDLKVLNLAYNKINKIADEAFY 311 (844)
T ss_dssp EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC----SSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh----hhcCCCCCEEECCCCcCCCCChHHhc
Confidence 887743322 11111 1368999999999998776654 44589999999999999999999999
Q ss_pred cCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceE
Q 048402 321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVV 400 (677)
Q Consensus 321 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 400 (677)
++++|++|++++|.+++..+..|..+++|+.|++++|++.+..+..|.++++|++|++++|.+. .++ .+++|+.
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~-----~~~~L~~ 385 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH-----FIPSIPD 385 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCS-----SCCSCSE
T ss_pred CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-ccc-----CCCCcch
Confidence 9999999999999999888999999999999999999999888889999999999999999997 444 2789999
Q ss_pred EEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcC-ccccccccCccccccCcccCccCCCCCCCcccccceeeEeec
Q 048402 401 LILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIP-KCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSE 479 (677)
Q Consensus 401 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (677)
|++++|+++ .+|.. ..+++.+++++|++.+.-. ..+.++++|+.++...+......+..
T Consensus 386 L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---------------- 445 (844)
T 3j0a_A 386 IFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ---------------- 445 (844)
T ss_dssp EEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS----------------
T ss_pred hccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc----------------
Confidence 999999998 44543 5689999999999986422 24557788877776666543221110
Q ss_pred CCchhhhhhhccccEEEcccCccc-----ccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccC
Q 048402 480 GEAIEYDEILNLVKETDVSRNNLT-----KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEI 554 (677)
Q Consensus 480 ~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 554 (677)
.+..+++|+.|++++|.++ +..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..
T Consensus 446 -----~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 446 -----TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp -----SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred -----ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccC
Confidence 1123678999999999997 445567899999999999999999888899999999999999999999777
Q ss_pred ccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCCCCCCCCCCCCC
Q 048402 555 PQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLCGAPLPKNCA 607 (677)
Q Consensus 555 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~~~~~~~~c~ 607 (677)
|..+. ++|+.||+++|++++.+|.. +..+..+++.+| |+.|+|.
T Consensus 521 ~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~N-----p~~C~c~ 564 (844)
T 3j0a_A 521 HNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHN-----KFICECE 564 (844)
T ss_dssp CCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEE-----CCCCSSS
T ss_pred hhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCC-----Ccccccc
Confidence 77666 89999999999999998874 556666666654 6666664
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-49 Score=432.27 Aligned_cols=509 Identities=19% Similarity=0.183 Sum_probs=380.7
Q ss_pred cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402 5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84 (677)
Q Consensus 5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~ 84 (677)
++++-++.+++ .+ |..+ .+++++|+++ ++.+++..+.+|.++++|++|++++|.+++..+..|..++ +|+
T Consensus 10 ~~~~c~~~~l~-~i-p~~l--~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-----~L~ 79 (570)
T 2z63_A 10 ITYQCMELNFY-KI-PDNL--PFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----HLS 79 (570)
T ss_dssp TEEECCSSCCS-SC-CSSS--CSSCCEEECC-SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCT-----TCC
T ss_pred cEEEeCCCCcc-cc-CCCc--cccccEEEcc-CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCch-----hCC
Confidence 45666666666 56 4333 2578888888 6677766677788888888888888888877777787777 888
Q ss_pred EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEcccccccc-ccChhhhhCCCCCCEEEeec
Q 048402 85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG-TLSEIHFSNLTKLSWFRVGG 163 (677)
Q Consensus 85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~l~~~~~~~l~~L~~L~l~~ 163 (677)
+|++++|.+++..|..|.++++|++|++++|.++...+..++++++|++|++++|.+.+ .+|. .|.++++|+.|++++
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSS 158 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTT
T ss_pred EEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChh-hhcccCCCCEEeCcC
Confidence 88888888887777788888888888888888876555568888888888888888764 3565 688888888888888
Q ss_pred cccceecCCCCCCCcCc----cEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccC
Q 048402 164 NKLTLEVRHDWIPPFQL----VALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQF 239 (677)
Q Consensus 164 n~l~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l 239 (677)
|.++...+..+..+.+| +.+++++|.+.+..|..+... +|++|++++|.............++.++...+....+
T Consensus 159 n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 88887777777777777 788888888877777777655 7888888887544332233344556666555433222
Q ss_pred cc------ccC-Ccccc--ccccEEEcccC-CCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeEec
Q 048402 240 HG------QIT-DLTKV--TQLLFLSVHSN-NMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKL 306 (677)
Q Consensus 240 ~~------~~~-~~~~~--~~L~~L~l~~n-~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l 306 (677)
.. ... .+..+ -.++.+++.++ .+.+..+.. +++|++|++++|.+.+ +|.. +..+ +|++|++
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~----~~~~-~L~~L~l 311 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDF----SYNF-GWQHLEL 311 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBC----CSCC-CCSEEEE
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhh----hccC-CccEEee
Confidence 11 100 11111 24566666666 444544443 5778888888888764 3332 3335 8888888
Q ss_pred CCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccC--CccCcCCCCCCEEecCCCccc
Q 048402 307 KDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTI--PVSLKNCTALESLDVGENEFV 384 (677)
Q Consensus 307 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~ 384 (677)
++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|++++.. +..+.++++|++|++++|.+.
T Consensus 312 ~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 386 (570)
T 2z63_A 312 VNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386 (570)
T ss_dssp ESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE
T ss_pred ccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc
Confidence 888887 4554 4778888888888887765554 67888888888888887554 566778888888888888887
Q ss_pred ccCChhhhhccCCceEEEcCCCcccccCC-ccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCC
Q 048402 385 GNIPTWTGERFSRMVVLILRSNNFHGPLP-TRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLP 463 (677)
Q Consensus 385 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~ 463 (677)
+ ++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..++
T Consensus 387 ~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------- 445 (570)
T 2z63_A 387 T-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS------------------- 445 (570)
T ss_dssp E-EEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-------------------
T ss_pred c-cccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC-------------------
Confidence 4 4433 3368888888888888886655 4678888888888888888766666555544
Q ss_pred CCCcccccceeeEeecCCchhhhhhhccccEEEcccCccc-ccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcE
Q 048402 464 LDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT-KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLES 542 (677)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 542 (677)
+|++|++++|.++ +.+|..+..+++|++|++++|++++..|..|.++++|++
T Consensus 446 ---------------------------~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 446 ---------------------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp ---------------------------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ---------------------------cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 4599999999998 578899999999999999999999888999999999999
Q ss_pred EECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCC
Q 048402 543 IDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQL 584 (677)
Q Consensus 543 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 584 (677)
|++++|++++..|..|..+++|+.|++++|++.|.+|....+
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999999888888999999999999999999999875443
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-48 Score=429.44 Aligned_cols=492 Identities=18% Similarity=0.212 Sum_probs=365.0
Q ss_pred CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402 2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI 81 (677)
Q Consensus 2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~ 81 (677)
+.....+.+++.++ .+ |..+ .++|++|+++ ++.+.+..|.+|.++++|++|++++|.+++..|..+..++
T Consensus 5 ~~~~~c~~~~~~l~-~i-p~~~--~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~----- 74 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SI-PSGL--TAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG----- 74 (549)
T ss_dssp CTTSEEECTTSCCS-SC-CSCC--CTTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-----
T ss_pred CCCceEECCCCccc-cc-cccC--CCCccEEECc-CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-----
Confidence 34455788888888 77 4444 3789999999 7778877788899999999999999999988888888888
Q ss_pred CccEEEcccCcCccccccccCCCCCCCEEECcCCccccC-CCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEE
Q 048402 82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP-IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR 160 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~ 160 (677)
+|++|++++|.+++..+..|+++++|++|++++|.+++. .|..++++++|++|++++|.+.+.++...|.++++|++|+
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 899999999999988887899999999999999998863 5678899999999999999855577766788999999999
Q ss_pred eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCcc--chHHHhccCCccEEECCCcc
Q 048402 161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLF--PIRFLKSAFQLKFLDLGLNQ 238 (677)
Q Consensus 161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~~~~~L~~L~Ls~n~ 238 (677)
+++|.+++..+..+..+++|+.|++++|.+.......+..+++|++|++++|.+++.. +..+...+++|+.|++++|.
T Consensus 155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred ccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 9999988888888888888888888887765433333356777888888888776642 22222345667777777776
Q ss_pred CccccC-----CccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcc
Q 048402 239 FHGQIT-----DLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQG 313 (677)
Q Consensus 239 l~~~~~-----~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 313 (677)
+.+..+ .....++++.+++++|.+.+.... +......+..+++++.|++.++.+..
T Consensus 235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-------------------~~~~~~~~~~l~~L~~L~l~~~~i~~ 295 (549)
T 2z81_A 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-------------------NPSESDVVSELGKVETVTIRRLHIPQ 295 (549)
T ss_dssp EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-------------------CCCTTTCCCCCTTCCEEEEESCBCSC
T ss_pred cchhHHHHHHHHhhhhccccccccccccccccccc-------------------cccchhhhhhhcccccccccccccch
Confidence 654321 112234555555555544332110 00001122335566666666665432
Q ss_pred c-----CCcccccCCCCceecccCccccccCCcCc-CCCCCccEEECcCCcccccCC---ccCcCCCCCCEEecCCCccc
Q 048402 314 E-----IPDCWMSYQNLEILELSNNKFTGKLPNSL-GSLTSLIWLLLGKNRLSGTIP---VSLKNCTALESLDVGENEFV 384 (677)
Q Consensus 314 ~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~ 384 (677)
. .+..+...++|+.|++++|.+. .+|..+ ..+++|+.|++++|++++..| ..+..+++|++|++++|++.
T Consensus 296 ~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 374 (549)
T 2z81_A 296 FYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374 (549)
T ss_dssp GGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred hhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence 1 1222344567888888888877 556555 467888888888888876553 33677888888888888886
Q ss_pred ccCCh--hhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCC
Q 048402 385 GNIPT--WTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPL 462 (677)
Q Consensus 385 ~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 462 (677)
+ ++. ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+ +|..+
T Consensus 375 ~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~---------------------- 429 (549)
T 2z81_A 375 S-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI---------------------- 429 (549)
T ss_dssp C-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS----------------------
T ss_pred c-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh----------------------
Confidence 3 332 23446888899999998888 577788888999999999998762 22211
Q ss_pred CCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcE
Q 048402 463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLES 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 542 (677)
+++|++|++++|++++.+ ..+++|++|++++|+++ .+|+ ...+++|++
T Consensus 430 --------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~ 477 (549)
T 2z81_A 430 --------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLV 477 (549)
T ss_dssp --------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCE
T ss_pred --------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCE
Confidence 235699999999998643 57899999999999999 6776 578999999
Q ss_pred EECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402 543 IDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 543 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
|++++|++++..|+.+..+++|++|++++|++.|.+|.
T Consensus 478 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred EecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 99999999998888999999999999999999999884
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-47 Score=420.04 Aligned_cols=488 Identities=19% Similarity=0.201 Sum_probs=405.1
Q ss_pred CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402 2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI 81 (677)
Q Consensus 2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~ 81 (677)
+++++|+|++|.++ .+++.+|.++++|++|+++ ++.+.+..+.+|.++++|++|++++|.+++..+..|..++
T Consensus 28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----- 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS----- 100 (570)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-----
T ss_pred ccccEEEccCCccC-ccChhHhhCCCCceEEECC-CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc-----
Confidence 47899999999998 5657899999999999999 7778887788899999999999999999998889999999
Q ss_pred CccEEEcccCcCccccccccCCCCCCCEEECcCCcccc-CCCcCCCCCCCCCEEEccccccccccChhhhhCCCCC----
Q 048402 82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG-PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL---- 156 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L---- 156 (677)
+|++|++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.++ .++...++.+++|
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhh
Confidence 99999999999997766679999999999999999986 36999999999999999999998 5555578888888
Q ss_pred CEEEeeccccceecCCCCCCCcCccEEEeecccCCC-CCChhccCCCCCCEEEccCCCCC------CccchHHHhccC--
Q 048402 157 SWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGS-RFPQWLHSQKHLQYLNLLNSGMS------DLFPIRFLKSAF-- 227 (677)
Q Consensus 157 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~------~~~~~~~~~~~~-- 227 (677)
+.+++++|.+....+..+... +|+.|++++|.... .++..+..+++++...+....+. .... ..+..+.
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~l~~l 257 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLCNL 257 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT-TTTGGGGGS
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch-hhhcccccc
Confidence 899999999999888887766 89999999986443 34566777888877665433221 1111 1112222
Q ss_pred CccEEECCCc-cCccccC-CccccccccEEEcccCCCCCCCCCC--CCCccEEEccCCcccccCChhHhhccCCCCCcCe
Q 048402 228 QLKFLDLGLN-QFHGQIT-DLTKVTQLLFLSVHSNNMSGPLPLI--SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIG 303 (677)
Q Consensus 228 ~L~~L~Ls~n-~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~ 303 (677)
.++.++++.+ .+.+..+ .+..+++|+.|++++|.+.+..... + +|++|++++|.+.. +|. ..+++|+.
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~-l~~------~~l~~L~~ 329 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ-FPT------LKLKSLKR 329 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS-CCB------CBCSSCCE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc-cCc------ccccccCE
Confidence 4567777766 5554443 3455689999999999887543322 4 89999999999873 332 23789999
Q ss_pred EecCCCCCcccCCcccccCCCCceecccCccccccC--CcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCC
Q 048402 304 LKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKL--PNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGEN 381 (677)
Q Consensus 304 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 381 (677)
|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+. +..+++|++|++++|
T Consensus 330 L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 330 LTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406 (570)
T ss_dssp EEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred EeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence 99999998866654 78899999999999998654 67788999999999999999866554 899999999999999
Q ss_pred cccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC-CCcCccccccccCccccccCcccCccC
Q 048402 382 EFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF-GTIPKCINNITGMVAANSFTRSSQQYL 460 (677)
Q Consensus 382 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~ 460 (677)
.+.+..+...+..+++|++|++++|.+.+..|..+.++++|++|++++|++. +.+|..+..+++
T Consensus 407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~--------------- 471 (570)
T 2z63_A 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN--------------- 471 (570)
T ss_dssp EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT---------------
T ss_pred ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC---------------
Confidence 9987666555558999999999999999989999999999999999999987 567766665554
Q ss_pred CCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCC
Q 048402 461 PLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSL 540 (677)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 540 (677)
|+.|++++|++++..|..+.++++|++|++++|++++..|..|.++++|
T Consensus 472 -------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 472 -------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp -------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred -------------------------------CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 4999999999999889999999999999999999998888889999999
Q ss_pred cEEECCCCcccccCcc
Q 048402 541 ESIDFSVNQLSGEIPQ 556 (677)
Q Consensus 541 ~~L~Ls~N~l~~~~p~ 556 (677)
+.|++++|++++..|.
T Consensus 521 ~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 521 QKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred cEEEecCCcccCCCcc
Confidence 9999999999977663
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.5e-46 Score=414.27 Aligned_cols=512 Identities=20% Similarity=0.229 Sum_probs=347.7
Q ss_pred cccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCC
Q 048402 3 HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIE 82 (677)
Q Consensus 3 ~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 82 (677)
++++|||++|.++ .+++.+|.++++|++|+|+ +|.+.+..+.+|.++++|++|+|++|++++..+..|..+. +
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~-----~ 125 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-----S 125 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT-----T
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC-----C
Confidence 5666777777666 5545666667777777776 5556655556666677777777777766666666666666 6
Q ss_pred ccEEEcccCcCccccccccCCCCCCCEEECcCCccccC-CCcCCCCCCCCCEEEccccccccccChhhhhCCCCC----C
Q 048402 83 LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP-IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL----S 157 (677)
Q Consensus 83 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L----~ 157 (677)
|++|++++|++++..+..|+++++|++|++++|.++.. .|..++.+++|++|++++|+++ .++...+..+.++ .
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCC
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc-ccccccccchhhhhhhhh
Confidence 77777777766665555666677777777777666542 4556666667777777776665 3333344443332 3
Q ss_pred EEEeeccccceecCCCCCCCcCccEEEeecccCCC-CCChhccCCCCCCEEEccCCCCC------CccchHHHhccCCcc
Q 048402 158 WFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGS-RFPQWLHSQKHLQYLNLLNSGMS------DLFPIRFLKSAFQLK 230 (677)
Q Consensus 158 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~i~------~~~~~~~~~~~~~L~ 230 (677)
.++++.|.+....+..+. ...++.+++.+|.... ..+..+..+..++...+..+... ...... +.....+.
T Consensus 205 ~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~l~ 282 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA-LEGLCNLT 282 (635)
T ss_dssp EEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT-TGGGGGSE
T ss_pred hhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc-cccccchh
Confidence 566666666554443332 2344556665554332 12333455555555444322211 111111 11222333
Q ss_pred EEECCCccC----ccccCCccccccccEEEcccCCCCCCCCCC-CCCccEEEccCCcccccCChhHhhccCCCCCcCeEe
Q 048402 231 FLDLGLNQF----HGQITDLTKVTQLLFLSVHSNNMSGPLPLI-SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLK 305 (677)
Q Consensus 231 ~L~Ls~n~l----~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~ 305 (677)
..++..+.. .+....+.....++.+.+.++.+....+.. ...++.|++.+|.+.+.... .++.++.++
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~l~~L~~l~ 355 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-------KLKSLKRLT 355 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC-------BCTTCCEEE
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc-------cchhhhhcc
Confidence 333332221 122223334466777777777665443322 56788888888877654332 256788888
Q ss_pred cCCCCCcccCCcccccCCCCceecccCcccc--ccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcc
Q 048402 306 LKDNSLQGEIPDCWMSYQNLEILELSNNKFT--GKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEF 383 (677)
Q Consensus 306 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 383 (677)
+..|...... .+..+++|+.+++++|.+. +..+..+..+.+|+.+++..|.... .+..+..+++|+.+++..+..
T Consensus 356 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~ 432 (635)
T 4g8a_A 356 FTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 432 (635)
T ss_dssp EESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEE
T ss_pred cccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccc
Confidence 8888765432 3457888999999988775 3445566678889999998888774 445677889999999998887
Q ss_pred cccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC-CcCccccccccCccccccCcccCccCCC
Q 048402 384 VGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG-TIPKCINNITGMVAANSFTRSSQQYLPL 462 (677)
Q Consensus 384 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 462 (677)
....+...+..+++++.++++.|.+.+..+..+..++.++.|++++|++.. ..|..+..
T Consensus 433 ~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~-------------------- 492 (635)
T 4g8a_A 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-------------------- 492 (635)
T ss_dssp ESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--------------------
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh--------------------
Confidence 766666666678889999999999988888888888999999999887532 34554444
Q ss_pred CCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcE
Q 048402 463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLES 542 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 542 (677)
+++|++|||++|++++..|..|.++++|++|+|++|++++..|..|+++++|++
T Consensus 493 --------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 493 --------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp --------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred --------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 445599999999999999999999999999999999999888889999999999
Q ss_pred EECCCCcccccCccccccC-CCCCEEEcccCcccccCCC
Q 048402 543 IDFSVNQLSGEIPQSMSNL-MSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 543 L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~ 580 (677)
|+|++|++++..|+.|..+ ++|++|++++|++.|.|..
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999999999999999988 6899999999999998864
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6e-48 Score=427.61 Aligned_cols=443 Identities=16% Similarity=0.217 Sum_probs=255.5
Q ss_pred CCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcC------Cc------ccchhhhhccccCcCCccEEEcccCcCc
Q 048402 27 TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHL------SQ------EISEILNIFSGCVSIELESLDLRSSSIS 94 (677)
Q Consensus 27 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l------~~------~~~~~~~~l~~~~~~~L~~L~L~~n~l~ 94 (677)
.+++.|+|+ ++.+.|.+|.+++++++|++|+|++|.+ .+ .+|... +. .|+ ++++++.+.
T Consensus 81 ~~V~~L~L~-~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~-----~l~-l~l~~~~l~ 151 (636)
T 4eco_A 81 GRVTGLSLE-GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQ-----KMR-MHYQKTFVD 151 (636)
T ss_dssp CCEEEEECT-TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HH-----HHH-THHHHHHTC
T ss_pred CCEEEEEec-CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HH-----HHH-hhHHHhhhc
Confidence 356666666 5556666666666666666666666644 11 222222 22 344 455555444
Q ss_pred cccccccCC-------------------CCCCCEEEC--cCCccccCCCcCCCCCCCCCEEEccccccccc---------
Q 048402 95 GHLTDQLGQ-------------------FKNLDNLDL--ANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGT--------- 144 (677)
Q Consensus 95 ~~~~~~~~~-------------------l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--------- 144 (677)
+.+|..+.. ...++.+.+ .+|.+++ +|..++++++|++|++++|.+++.
T Consensus 152 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp CCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred cCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 444433331 111222222 2456666 677777777777777777777653
Q ss_pred --------cChhhhh--CCCCCCEEEeeccccceecCCCCCCCcCccEEEeeccc-CCC-CCChhccCC------CCCCE
Q 048402 145 --------LSEIHFS--NLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCY-VGS-RFPQWLHSQ------KHLQY 206 (677)
Q Consensus 145 --------l~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~ 206 (677)
+|. .++ ++++|++|++++|.+.+..+..+..+++|+.|++++|. +.+ .+|..++.+ ++|++
T Consensus 231 ~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 231 NSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred ccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 665 555 77777777777777777777777777777777777776 666 677777665 88999
Q ss_pred EEccCCCCCCccch-HHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccc
Q 048402 207 LNLLNSGMSDLFPI-RFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSG 285 (677)
Q Consensus 207 L~l~~n~i~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~ 285 (677)
|++++|.++.+ |. ..+..+++|++|++++|.+.+.++.+..+++|+.|++++|.++
T Consensus 310 L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~---------------------- 366 (636)
T 4eco_A 310 IYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT---------------------- 366 (636)
T ss_dssp EECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE----------------------
T ss_pred EECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc----------------------
Confidence 99999988844 44 2446688899999999888866654444444444444333332
Q ss_pred cCChhHhhccCCCCC-cCeEecCCCCCcccCCcccccCC--CCceecccCccccccCCcCcC-------CCCCccEEECc
Q 048402 286 SVSHYLCYRINEPKS-LIGLKLKDNSLQGEIPDCWMSYQ--NLEILELSNNKFTGKLPNSLG-------SLTSLIWLLLG 355 (677)
Q Consensus 286 ~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~l~ 355 (677)
.+|.. +..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+.+..|..+. .+++|+.|+++
T Consensus 367 ~lp~~----l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 367 EIPAN----FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp ECCTT----SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred cccHh----hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 11111 111334 445555555444 3444443322 455555555555544444444 44445555555
Q ss_pred CCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCC
Q 048402 356 KNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGT 435 (677)
Q Consensus 356 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 435 (677)
+|+++...+..+..+++|++|++++|.+. .+|...+.... ..+.++++|++|++++|+++ .
T Consensus 442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 442 NNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp SSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-B
T ss_pred CCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------------ccccccCCccEEECcCCcCC-c
Confidence 55544322223334445555555555444 44433322111 00111225555555555555 3
Q ss_pred cCcccc--ccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCC
Q 048402 436 IPKCIN--NITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNL 513 (677)
Q Consensus 436 ~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 513 (677)
+|..+. . +++|+.|++++|++++ +|..+.++
T Consensus 503 lp~~~~~~~----------------------------------------------l~~L~~L~Ls~N~l~~-ip~~~~~l 535 (636)
T 4eco_A 503 LSDDFRATT----------------------------------------------LPYLVGIDLSYNSFSK-FPTQPLNS 535 (636)
T ss_dssp CCGGGSTTT----------------------------------------------CTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred cChhhhhcc----------------------------------------------CCCcCEEECCCCCCCC-cChhhhcC
Confidence 443332 2 2233556666666654 55566666
Q ss_pred CCCcEEec------cCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccccc
Q 048402 514 KATQSLNF------SHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGK 577 (677)
Q Consensus 514 ~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 577 (677)
++|++|++ ++|++.+.+|..+.++++|++|++++|++. .+|..+. ++|+.||+++|++.+.
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccc
Confidence 66666666 567788888888888888888888888884 7777665 7888889988888754
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-47 Score=412.34 Aligned_cols=458 Identities=18% Similarity=0.203 Sum_probs=313.5
Q ss_pred cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402 5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84 (677)
Q Consensus 5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~ 84 (677)
++||+++|.++ .+ |..+. ++|++|+++ ++.+.+..|.+|.++++|++|++++|.+++..|..+..++ +|+
T Consensus 3 ~~l~ls~n~l~-~i-p~~~~--~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~ 72 (520)
T 2z7x_B 3 FLVDRSKNGLI-HV-PKDLS--QKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-----ELE 72 (520)
T ss_dssp CEEECTTSCCS-SC-CCSCC--TTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-----TCC
T ss_pred ceEecCCCCcc-cc-ccccc--ccccEEECC-CCcccccChhhccccccccEEecCCCccCCcChHHhhccc-----CCC
Confidence 57888888888 67 44443 788888888 7777777777888888888888888888887788888888 888
Q ss_pred EEEcccCcCccccccccCCCCCCCEEECcCCcccc-CCCcCCCCCCCCCEEEccccccccccChhhhhCCCCC--CEEEe
Q 048402 85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVG-PIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL--SWFRV 161 (677)
Q Consensus 85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L--~~L~l 161 (677)
+|++++|+++. +|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+.+ ..+..+++| +.|++
T Consensus 73 ~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 73 YLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLL 145 (520)
T ss_dssp EEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEE
T ss_pred EEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEe
Confidence 88888888884 5544 78888888888888876 357788888888888888888763 246666666 77777
Q ss_pred ecccc--ceecCCCCCCCc-CccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCcc
Q 048402 162 GGNKL--TLEVRHDWIPPF-QLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ 238 (677)
Q Consensus 162 ~~n~l--~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~ 238 (677)
++|.+ .+..+..+..+. ... .+++++|.+.+..+...+..+++|+.+++++|.
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l------------------------~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESL------------------------HIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEE------------------------EEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred ecccccccccccccccccccceE------------------------EEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence 77776 444333333322 122 233444444333333223334445555554443
Q ss_pred -------CccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCC
Q 048402 239 -------FHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSL 311 (677)
Q Consensus 239 -------l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 311 (677)
+.+.++.+..+++|+.| ++++|.+++.....+.... ..++|++|++++|.+
T Consensus 202 ~~~~~~~~~~~~~~l~~l~~L~~L---------------------~l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l 259 (520)
T 2z7x_B 202 EDNKCSYFLSILAKLQTNPKLSNL---------------------TLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKL 259 (520)
T ss_dssp STTTTHHHHHHHHGGGGCTTCCEE---------------------EEEEEEEEHHHHHHHHHHH-HTSSCSEEEEEEEEE
T ss_pred cccccceeecchhhhccccchhhc---------------------cccccccCHHHHHHHHHHh-hhCcccEEEeecccc
Confidence 33333333333334443 3443333322222111111 134677777777777
Q ss_pred cccCCccc-----ccCCCCceecccCccccccCC-cCcCCC---CCccEEECcCCcccccCCccCcCCCCCCEEecCCCc
Q 048402 312 QGEIPDCW-----MSYQNLEILELSNNKFTGKLP-NSLGSL---TSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE 382 (677)
Q Consensus 312 ~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 382 (677)
.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.
T Consensus 260 ~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNL 335 (520)
T ss_dssp ESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC
T ss_pred cCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCc
Confidence 66666666 6777777777777776 344 333333 56777777777765322 12567778888888887
Q ss_pred ccccCChhhhhccCCceEEEcCCCcccc--cCCccccCCCCCCEEeCCCCcCCCCcCcc-ccccccCccccccCcccCcc
Q 048402 383 FVGNIPTWTGERFSRMVVLILRSNNFHG--PLPTRLCDLAFLQILDLADNNLFGTIPKC-INNITGMVAANSFTRSSQQY 459 (677)
Q Consensus 383 l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~ 459 (677)
+.+.+|..+. .+++|++|++++|++++ .+|..+..+++|++|++++|++.+.+|.. +..
T Consensus 336 l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~----------------- 397 (520)
T 2z7x_B 336 LTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW----------------- 397 (520)
T ss_dssp CCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC-----------------
T ss_pred cChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc-----------------
Confidence 7766666554 67788888888888775 45567788888888888888887655542 333
Q ss_pred CCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCC
Q 048402 460 LPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRS 539 (677)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 539 (677)
+++|+.|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++
T Consensus 398 -----------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~ 445 (520)
T 2z7x_B 398 -----------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEA 445 (520)
T ss_dssp -----------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred -----------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCC
Confidence 34458888999888877776665 78999999999999 78888889999
Q ss_pred CcEEECCCCcccccCccc-cccCCCCCEEEcccCcccccCCC
Q 048402 540 LESIDFSVNQLSGEIPQS-MSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 540 L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
|++|++++|+++ .+|.. +..+++|++|++++|++.|.++.
T Consensus 446 L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 446 LQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999999999999 55554 89999999999999999998764
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-46 Score=410.00 Aligned_cols=491 Identities=20% Similarity=0.225 Sum_probs=382.8
Q ss_pred CCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCC
Q 048402 27 TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKN 106 (677)
Q Consensus 27 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 106 (677)
+...+.|++ ++.++ .+|..+. ++|++|++++|.+++..|..+..++ +|++|++++|++++..|.+|.++++
T Consensus 5 ~~~~~c~~~-~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~~ 75 (549)
T 2z81_A 5 DASGVCDGR-SRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACA-----NLQVLILKSSRINTIEGDAFYSLGS 75 (549)
T ss_dssp CTTSEEECT-TSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCT-----TCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCceEECC-CCccc-cccccCC--CCccEEECcCCccCccChhhhhcCC-----cccEEECCCCCcCccChhhcccccc
Confidence 344455676 55555 4565544 6899999999999988888888888 9999999999999888889999999
Q ss_pred CCEEECcCCccccCCCcCCCCCCCCCEEEcccccccc-ccChhhhhCCCCCCEEEeeccc-cceecCCCCCCCcCccEEE
Q 048402 107 LDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG-TLSEIHFSNLTKLSWFRVGGNK-LTLEVRHDWIPPFQLVALG 184 (677)
Q Consensus 107 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ 184 (677)
|++|++++|.+++..|..|+++++|++|++++|.+++ ..+. .+.++++|++|++++|. +.......+..+++|++|+
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 9999999999997777779999999999999999874 2344 68899999999999998 4555557888899999999
Q ss_pred eecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCC
Q 048402 185 FHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSG 264 (677)
Q Consensus 185 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 264 (677)
+++|.+.+..|..+..+++|++|++++|.+... +..+...+++|++|++++|.+.+......
T Consensus 155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----------------- 216 (549)
T 2z81_A 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPL----------------- 216 (549)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCC-----------------
T ss_pred ccCCcccccChhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCcccccccccc-----------------
Confidence 999999988899999999999999999887654 55555667888888888887765321000
Q ss_pred CCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccC------CcccccCCCCceecccCcccccc
Q 048402 265 PLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEI------PDCWMSYQNLEILELSNNKFTGK 338 (677)
Q Consensus 265 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~ 338 (677)
.....+++|+.|++++|.+++..+..+...+..+++++.+++++|.+.+.. ...+..+++|+.|++.++.+...
T Consensus 217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~ 296 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296 (549)
T ss_dssp SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG
T ss_pred chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchh
Confidence 011225678888888888887766666666667889999999999876532 13356788999999999877632
Q ss_pred -----CCcCcCCCCCccEEECcCCcccccCCccC-cCCCCCCEEecCCCcccccCChh--hhhccCCceEEEcCCCcccc
Q 048402 339 -----LPNSLGSLTSLIWLLLGKNRLSGTIPVSL-KNCTALESLDVGENEFVGNIPTW--TGERFSRMVVLILRSNNFHG 410 (677)
Q Consensus 339 -----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~L~~n~l~~ 410 (677)
.+..+...++|+.|++++|++. .+|..+ ..+++|++|++++|.+.+.+|.. ....+++|++|++++|++++
T Consensus 297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 375 (549)
T 2z81_A 297 YLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375 (549)
T ss_dssp GGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC
T ss_pred hhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc
Confidence 1222334578999999999997 556555 57999999999999998766532 12368999999999999986
Q ss_pred cCC--ccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhh
Q 048402 411 PLP--TRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEI 488 (677)
Q Consensus 411 ~~~--~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (677)
..+ ..+..+++|++|++++|+++ .+|..+..+
T Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~--------------------------------------------- 409 (549)
T 2z81_A 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP--------------------------------------------- 409 (549)
T ss_dssp HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC---------------------------------------------
T ss_pred cccchhhhhcCCCCCEEECCCCCCc-cCChhhccc---------------------------------------------
Confidence 532 46888999999999999997 566655444
Q ss_pred hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402 489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN 568 (677)
Q Consensus 489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 568 (677)
++|++|++++|++++ +|..+. ++|++|++++|++++. +..+++|++|++++|+++ .+|+ ...+++|++|+
T Consensus 410 -~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~ 479 (549)
T 2z81_A 410 -EKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMK 479 (549)
T ss_dssp -TTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEE
T ss_pred -ccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEe
Confidence 445999999999984 444332 6899999999999864 257899999999999999 6776 56799999999
Q ss_pred cccCcccccCCCC-CCCCCcCcccccCCCCCCCCCCCCCC
Q 048402 569 LSNNKLTGKIPSS-TQLQSFDASSFTGNDLCGAPLPKNCA 607 (677)
Q Consensus 569 ls~N~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~~~~~c~ 607 (677)
+++|++++.+|.. ..+..++.+++++| |+.|.|+
T Consensus 480 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-----~~~~~~~ 514 (549)
T 2z81_A 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTN-----PWDCSCP 514 (549)
T ss_dssp CCSSCCCCCCTTGGGGCTTCCEEECCSS-----CBCCCHH
T ss_pred cCCCccCCcCHHHHhcCcccCEEEecCC-----CccCCCc
Confidence 9999999888763 56677777777665 5556663
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-45 Score=409.80 Aligned_cols=442 Identities=20% Similarity=0.245 Sum_probs=318.2
Q ss_pred CCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCc------c------ccccccCCCCCCCEEECcCCcccc
Q 048402 52 CNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSIS------G------HLTDQLGQFKNLDNLDLANNSIVG 119 (677)
Q Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~------~------~~~~~~~~l~~L~~L~L~~n~l~~ 119 (677)
.+++.|+|+++.+.|.+|..++.++ +|++|+|++|.+. + .+|... +.+|+ +++++|.+.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~-----~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~ 152 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLT-----ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDY 152 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCT-----TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCC
T ss_pred CCEEEEEecCcccCCcCChHHhcCc-----cceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhcc
Confidence 5899999999999999999999999 9999999999762 2 223322 44566 7788887776
Q ss_pred CCCcCCCC-------------------CCCCCEEEcc--ccccccccChhhhhCCCCCCEEEeecccccee---------
Q 048402 120 PIPQSLGH-------------------LSNLRVLQIY--NNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLE--------- 169 (677)
Q Consensus 120 ~~~~~~~~-------------------l~~L~~L~L~--~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~--------- 169 (677)
..|..+.. ...++.+.+. .|+++| +|. .++++++|++|++++|.+++.
T Consensus 153 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 153 DPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp CGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred CchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCcccccccccccccc
Confidence 66665541 1123333333 578887 888 799999999999999999985
Q ss_pred --------cCCCCC--CCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCC-CCC-ccchHHHh-----ccCCccEE
Q 048402 170 --------VRHDWI--PPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSG-MSD-LFPIRFLK-----SAFQLKFL 232 (677)
Q Consensus 170 --------~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~-----~~~~L~~L 232 (677)
.+..+. .+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ ..|..+.. .+++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 788888 99999999999999999999999999999999999998 887 66766643 23899999
Q ss_pred ECCCccCccccC--CccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCC
Q 048402 233 DLGLNQFHGQIT--DLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNS 310 (677)
Q Consensus 233 ~Ls~n~l~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (677)
++++|.++..+. .+.. +++|+.|++++|.
T Consensus 311 ~L~~n~l~~ip~~~~l~~-------------------------------------------------l~~L~~L~L~~N~ 341 (636)
T 4eco_A 311 YIGYNNLKTFPVETSLQK-------------------------------------------------MKKLGMLECLYNQ 341 (636)
T ss_dssp ECCSSCCSSCCCHHHHTT-------------------------------------------------CTTCCEEECCSCC
T ss_pred ECCCCcCCccCchhhhcc-------------------------------------------------CCCCCEEeCcCCc
Confidence 999998873222 1222 3444455555555
Q ss_pred CcccCCcccccCCCCceecccCccccccCCcCcCCCCC-ccEEECcCCcccccCCccCcCCC--CCCEEecCCCcccccC
Q 048402 311 LQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTS-LIWLLLGKNRLSGTIPVSLKNCT--ALESLDVGENEFVGNI 387 (677)
Q Consensus 311 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~ 387 (677)
+.|.+| .|..+++|++|++++|+++ .+|..+..+++ |+.|++++|+++ .+|..+..++ +|++|++++|.+.+.+
T Consensus 342 l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 342 LEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred Cccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcc
Confidence 544444 4555555555555555555 44555555555 555555555555 4444444433 5555555555555544
Q ss_pred Chhhhh------ccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCC
Q 048402 388 PTWTGE------RFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLP 461 (677)
Q Consensus 388 ~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 461 (677)
|..+.. .+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|........
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~---------------- 481 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN---------------- 481 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT----------------
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc----------------
Confidence 433320 3456667777777666443344555777777777777776 55543221100
Q ss_pred CCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccC--CCCCCcEEeccCCcceeecccccccCCC
Q 048402 462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMT--NLKATQSLNFSHNSFTGRIPESIGAMRS 539 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 539 (677)
.....+++|+.|++++|+++ .+|..+. .+++|++|+|++|++++ +|..+.++++
T Consensus 482 ----------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 482 ----------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp ----------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred ----------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence 00012456799999999999 6888887 99999999999999996 8999999999
Q ss_pred CcEEEC------CCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCCCC
Q 048402 540 LESIDF------SVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGNDLC 598 (677)
Q Consensus 540 L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~ 598 (677)
|++|++ ++|++.+.+|..+..+++|++|++++|++ +.+|.... ..++.+++++|.+.
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNI 600 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTC
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCc
Confidence 999999 56888889999999999999999999999 67887633 77888888887544
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.7e-43 Score=392.85 Aligned_cols=525 Identities=19% Similarity=0.158 Sum_probs=382.0
Q ss_pred EEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEE
Q 048402 7 LSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESL 86 (677)
Q Consensus 7 L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L 86 (677)
.+-++.+++ .| |..+- +++++|||+ +|.+++..+.+|.++++|++|+|++|+|++..+.+|..++ +|++|
T Consensus 36 ~~c~~~~l~-~v-P~~lp--~~~~~LdLs-~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~-----~L~~L 105 (635)
T 4g8a_A 36 YQCMELNFY-KI-PDNLP--FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----HLSTL 105 (635)
T ss_dssp EECTTSCCS-SC-CSSSC--TTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-----TCCEE
T ss_pred EECCCCCcC-cc-CCCCC--cCCCEEEee-CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCC-----CCCEE
Confidence 344444555 56 43331 478999999 7777777777899999999999999999888888888888 89999
Q ss_pred EcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccc-cChhhhhCCCCCCEEEeeccc
Q 048402 87 DLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGT-LSEIHFSNLTKLSWFRVGGNK 165 (677)
Q Consensus 87 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-l~~~~~~~l~~L~~L~l~~n~ 165 (677)
+|++|++++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++. +|. .+.++++|++|++++|.
T Consensus 106 ~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 106 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp ECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSC
T ss_pred EccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCcc
Confidence 9999999887778889999999999999999877777889999999999999988642 344 78888999999999999
Q ss_pred cceecCCCCCCCcC----ccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402 166 LTLEVRHDWIPPFQ----LVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG 241 (677)
Q Consensus 166 l~~~~~~~~~~~~~----L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 241 (677)
+++..+..+..+.+ ...++++.|.+....+..+. ...++.+++.+|..........+..+..++...+..+....
T Consensus 185 l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 185 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 88877777655443 34677788877765555443 34567788888766544444444556666666553332211
Q ss_pred ------c-cCCccccccccEEEcccCCCCCC------CCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCC
Q 048402 242 ------Q-ITDLTKVTQLLFLSVHSNNMSGP------LPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD 308 (677)
Q Consensus 242 ------~-~~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 308 (677)
. ...+.....+....+..+..... ......+++.+++.++.+....+ +.....++.|++.+
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~------~~~~~~L~~L~l~~ 337 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD------FSYNFGWQHLELVN 337 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG------GGSCCCCSEEEEES
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc------cccchhhhhhhccc
Confidence 1 11222334454444444332211 11125677888888877654332 12256788888888
Q ss_pred CCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccc--cCCccCcCCCCCCEEecCCCccccc
Q 048402 309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG--TIPVSLKNCTALESLDVGENEFVGN 386 (677)
Q Consensus 309 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~ 386 (677)
|.+....+ ..++.|+.+++..|.+... .....+++|+.|++++|.+.. ..+..+..+.+|+.+++..|....
T Consensus 338 ~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~- 411 (635)
T 4g8a_A 338 CKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT- 411 (635)
T ss_dssp CEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-
T ss_pred ccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-
Confidence 87764433 3456778888888876633 234567888888888887753 345556678888888888887763
Q ss_pred CChhhhhccCCceEEEcCCCcccccCC-ccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCC
Q 048402 387 IPTWTGERFSRMVVLILRSNNFHGPLP-TRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLD 465 (677)
Q Consensus 387 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 465 (677)
.+..+. .+++|+.+++..++.....+ ..+..+++++.+++++|.+.+..|..+..
T Consensus 412 ~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~----------------------- 467 (635)
T 4g8a_A 412 MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----------------------- 467 (635)
T ss_dssp ECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-----------------------
T ss_pred cccccc-ccccccchhhhhcccccccccccccccccccccccccccccccccccccc-----------------------
Confidence 333333 67888888888877765443 45778888888888888887666655444
Q ss_pred CcccccceeeEeecCCchhhhhhhccccEEEcccCccc-ccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEE
Q 048402 466 GDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT-KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESID 544 (677)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 544 (677)
++.++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|+++++|++|+
T Consensus 468 -----------------------~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 468 -----------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp -----------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred -----------------------chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 444599999999854 46788999999999999999999999999999999999999
Q ss_pred CCCCcccccCccccccCCCCCEEEcccCcccccCCCCC-CC-CCcCcccccCCCCCCCCCCCCCC
Q 048402 545 FSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSST-QL-QSFDASSFTGNDLCGAPLPKNCA 607 (677)
Q Consensus 545 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~l~~~~~~~n~l~~~~~~~~c~ 607 (677)
|++|++++..|..|..+++|++||+++|++++..|... .+ ..++.++++ ++|+.|+|.
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~-----~Np~~C~C~ 584 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT-----QNDFACTCE 584 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT-----TCCBCCSGG
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee-----CCCCcccCC
Confidence 99999999999999999999999999999999888752 22 456666554 568888885
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.3e-45 Score=409.07 Aligned_cols=386 Identities=17% Similarity=0.233 Sum_probs=225.7
Q ss_pred ccEEEccc--CcCccccccccCCCCCCCEEECcCCcccc-----------------CCCcCCC--CCCCCCEEEcccccc
Q 048402 83 LESLDLRS--SSISGHLTDQLGQFKNLDNLDLANNSIVG-----------------PIPQSLG--HLSNLRVLQIYNNKL 141 (677)
Q Consensus 83 L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~i 141 (677)
++.+.+.. |.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+
T Consensus 425 l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l 503 (876)
T 4ecn_A 425 LKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503 (876)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred hhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC
Confidence 44444443 67776 77788888888888888888886 2788877 888888888888888
Q ss_pred ccccChhhhhCCCCCCEEEeeccc-cce-ecCCCC-------CCCcCccEEEeecccCCCCCCh--hccCCCCCCEEEcc
Q 048402 142 NGTLSEIHFSNLTKLSWFRVGGNK-LTL-EVRHDW-------IPPFQLVALGFHNCYVGSRFPQ--WLHSQKHLQYLNLL 210 (677)
Q Consensus 142 ~~~l~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~-------~~~~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~ 210 (677)
.+.+|. .+.++++|+.|++++|. +++ ..+..+ ..+++|+.|++++|.+. .+|. .++++++|++|+++
T Consensus 504 ~~~iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 504 MTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp CCSCCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECT
T ss_pred CccChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECC
Confidence 878886 78888888888888887 776 455433 34458999999999988 7888 89999999999999
Q ss_pred CCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChh
Q 048402 211 NSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHY 290 (677)
Q Consensus 211 ~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 290 (677)
+|.++.+ | .+..+++|+.|++++|.+...+..+..+++
T Consensus 582 ~N~l~~l-p--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~--------------------------------------- 619 (876)
T 4ecn_A 582 HNKVRHL-E--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTD--------------------------------------- 619 (876)
T ss_dssp TSCCCBC-C--CCCTTSEESEEECCSSCCSCCCTTSCEECT---------------------------------------
T ss_pred CCCcccc-h--hhcCCCcceEEECcCCccccchHHHhhccc---------------------------------------
Confidence 9998843 4 234456666666666666532222222222
Q ss_pred HhhccCCCCCcCeEecCCCCCcccCCcccccCC--CCceecccCccccccCCcC---cC--CCCCccEEECcCCcccccC
Q 048402 291 LCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQ--NLEILELSNNKFTGKLPNS---LG--SLTSLIWLLLGKNRLSGTI 363 (677)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~l~~n~~~~~~ 363 (677)
+|+.|++++|.++ .+|..+..++ +|+.|++++|++.+.+|.. +. .+++|+.|++++|+++...
T Consensus 620 ---------~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp 689 (876)
T 4ecn_A 620 ---------QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689 (876)
T ss_dssp ---------TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC
T ss_pred ---------cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC
Confidence 0333333333333 2333333222 2444444444444332211 11 2235555555555555222
Q ss_pred CccCcCCCCCCEEecCCCcccccCChhhhhcc-------CCceEEEcCCCcccccCCcccc--CCCCCCEEeCCCCcCCC
Q 048402 364 PVSLKNCTALESLDVGENEFVGNIPTWTGERF-------SRMVVLILRSNNFHGPLPTRLC--DLAFLQILDLADNNLFG 434 (677)
Q Consensus 364 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~ 434 (677)
+..+..+++|+.|++++|.+. .+|...+... ++|+.|+|++|+++ .+|..+. .+++|+.|++++|++.+
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc
Confidence 222335555555555555555 4554443211 25555555555555 4444444 55555555555555554
Q ss_pred CcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEccc------CcccccCCc
Q 048402 435 TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSR------NNLTKSIPL 508 (677)
Q Consensus 435 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~ 508 (677)
+|..+.++++| +.|+|++ |++.+.+|.
T Consensus 768 -lp~~l~~L~~L----------------------------------------------~~L~Ls~N~~ls~N~l~~~ip~ 800 (876)
T 4ecn_A 768 -FPTQPLNSSQL----------------------------------------------KAFGIRHQRDAEGNRILRQWPT 800 (876)
T ss_dssp -CCCGGGGCTTC----------------------------------------------CEEECCCCBCTTCCBCCCCCCT
T ss_pred -cchhhhcCCCC----------------------------------------------CEEECCCCCCcccccccccChH
Confidence 44444333332 4454443 555555666
Q ss_pred ccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccc
Q 048402 509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575 (677)
Q Consensus 509 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 575 (677)
.+.++++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|++.
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 666666666666666666 35555544 46666666666665555555544444445555555443
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-44 Score=390.25 Aligned_cols=442 Identities=18% Similarity=0.168 Sum_probs=287.8
Q ss_pred CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402 2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI 81 (677)
Q Consensus 2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~ 81 (677)
++|++|+|++|.++ .+++..|.++++|++|+++ ++.+.+..|.+|.++++|++|++++|.+++ +|.. .++
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~----- 90 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTV----- 90 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCC-----
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecC-CCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccC-----
Confidence 57999999999998 5547889999999999999 788888889999999999999999999995 4544 667
Q ss_pred CccEEEcccCcCcc-ccccccCCCCCCCEEECcCCccccCCCcCCCCCCCC--CEEEcccccc--ccccChhhhhCCC-C
Q 048402 82 ELESLDLRSSSISG-HLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNL--RVLQIYNNKL--NGTLSEIHFSNLT-K 155 (677)
Q Consensus 82 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~i--~~~l~~~~~~~l~-~ 155 (677)
+|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|. .+..+. +
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~-~l~~l~~~ 166 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE-GLQDFNTE 166 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT-TTTTCCEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc-cccccccc
Confidence 99999999999997 478899999999999999999985 467778888 9999999999 666665 566655 2
Q ss_pred CCEEEeeccccceecC-CCCCCCcCccEEEeeccc-------CCCCCChhccCCCCCCEEEccCCCCCCccchHHHh--c
Q 048402 156 LSWFRVGGNKLTLEVR-HDWIPPFQLVALGFHNCY-------VGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLK--S 225 (677)
Q Consensus 156 L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~--~ 225 (677)
...+++++|.+.+..+ ..+..+++|+.+++++|. +.+.+| .+..+++|+.|++++|.+++.....+.. .
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhh
Confidence 3356677777665333 355667777888777775 333333 5666777777777776665433222211 1
Q ss_pred cCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEe
Q 048402 226 AFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLK 305 (677)
Q Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~ 305 (677)
.++|++|++++|.+.+.++...... ....+++|+.+++++|.+ .+|.
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~---------------~~~~l~~L~~l~l~~n~~--~~p~---------------- 292 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDY---------------SGTSLKALSIHQVVSDVF--GFPQ---------------- 292 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCC---------------CSCCCCEEEEEEEEECCC--CSCT----------------
T ss_pred hCcccEEEeecccccCccccchhhc---------------ccccCceeEeccccccce--ecch----------------
Confidence 2355555555555543332211000 001122333344444433 1221
Q ss_pred cCCCCCcccCCcccccC---CCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCc
Q 048402 306 LKDNSLQGEIPDCWMSY---QNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE 382 (677)
Q Consensus 306 l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 382 (677)
..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++..|..+..+++|++|++++|+
T Consensus 293 -----------~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 359 (520)
T 2z7x_B 293 -----------SYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359 (520)
T ss_dssp -----------HHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC
T ss_pred -----------hhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc
Confidence 122221 33444444444443211 11344455555555555554445555555555555555555
Q ss_pred ccc--cCChhhhhccCCceEEEcCCCcccccCCc-cccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCcc
Q 048402 383 FVG--NIPTWTGERFSRMVVLILRSNNFHGPLPT-RLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQY 459 (677)
Q Consensus 383 l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 459 (677)
+.+ .+|..+. .+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+.
T Consensus 360 l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~------------------ 420 (520)
T 2z7x_B 360 LKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP------------------ 420 (520)
T ss_dssp CCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC------------------
T ss_pred cCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc------------------
Confidence 542 2222222 455666666666666553333 356667777777777777655443221
Q ss_pred CCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc-cccCC
Q 048402 460 LPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES-IGAMR 538 (677)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~ 538 (677)
++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. |..++
T Consensus 421 ------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 468 (520)
T 2z7x_B 421 ------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLT 468 (520)
T ss_dssp ------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred ------------------------------ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCC
Confidence 24578888888887 67777778999999999999998 45554 88999
Q ss_pred CCcEEECCCCcccccCc
Q 048402 539 SLESIDFSVNQLSGEIP 555 (677)
Q Consensus 539 ~L~~L~Ls~N~l~~~~p 555 (677)
+|++|++++|++++..+
T Consensus 469 ~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 469 SLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred cccEEECcCCCCcccCC
Confidence 99999999999986543
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3e-44 Score=394.05 Aligned_cols=465 Identities=19% Similarity=0.219 Sum_probs=313.1
Q ss_pred cCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCC
Q 048402 24 GNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQ 103 (677)
Q Consensus 24 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 103 (677)
..+...++++++ ++.+++ +|..+. ++|++|++++|.+++..+..+..++ +|++|++++|.+++..|+.|.+
T Consensus 28 ~~~~~~~~l~ls-~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 28 FSNELESMVDYS-NRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLS-----ELRVLRLSHNRIRSLDFHVFLF 98 (562)
T ss_dssp -----CCEEECT-TSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCT-----TCCEEECCSCCCCEECTTTTTT
T ss_pred cccCCCcEEEcC-CCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCC-----CccEEECCCCCCCcCCHHHhCC
Confidence 345556788888 666664 565543 6788888888888877777788777 8888888888888777778888
Q ss_pred CCCCCEEECcCCccccCCCcCCCCCCCCCEEEcccccccc-ccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCc--
Q 048402 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG-TLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQL-- 180 (677)
Q Consensus 104 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L-- 180 (677)
+++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|. .|+++++|++|++++|.++. ..+..+.++
T Consensus 99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~-~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L 171 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHL 171 (562)
T ss_dssp CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCG-GGGGCTTCCEEEEECSBCCT---TTTGGGTTSCE
T ss_pred CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchH-hhcccCcccEEecCCCcccc---Cchhhhhhcee
Confidence 888888888888887 45555 78888888888888873 2233 68888888888888887764 234444444
Q ss_pred cEEEeecccC--CCCCChhccCCC-CCCEEEccCCCCCCccchHHHhccCCccEEECCCcc-----CccccCCccccccc
Q 048402 181 VALGFHNCYV--GSRFPQWLHSQK-HLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQ-----FHGQITDLTKVTQL 252 (677)
Q Consensus 181 ~~L~l~~n~~--~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~-----l~~~~~~~~~~~~L 252 (677)
+.|++++|.+ .+..|..+..+. ..-.+++++|.+.+..+......+++|+.+++++|. +.+.++.+...++
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~- 250 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT- 250 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS-
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc-
Confidence 7777777777 666666666543 111445666666554444334445566666666653 1222222333334
Q ss_pred cEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccc-----ccCCCCce
Q 048402 253 LFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW-----MSYQNLEI 327 (677)
Q Consensus 253 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~ 327 (677)
++.++++++.+.+.....+...+. .++|++|++++|.+.+.+|..+ ..++.|+.
T Consensus 251 --------------------L~~L~L~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~ 309 (562)
T 3a79_B 251 --------------------LLNVTLQHIETTWKCSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309 (562)
T ss_dssp --------------------CEEEEEEEEEECHHHHHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEE
T ss_pred --------------------ceEEEecCCcCcHHHHHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheeh
Confidence 444444444433221111111111 3467777777777776666665 55555555
Q ss_pred ecccCccccccCC-cCcCC---CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402 328 LELSNNKFTGKLP-NSLGS---LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL 403 (677)
Q Consensus 328 L~L~~n~l~~~~~-~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 403 (677)
++++.+.+ .+| ..+.. ..+|+.|++++|.+.... ....+++|++|++++|.+.+.+|..+. .+++|++|++
T Consensus 310 ~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L 384 (562)
T 3a79_B 310 EHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLIL 384 (562)
T ss_dssp EEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEEC
T ss_pred hhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEEC
Confidence 55555555 233 11111 246778888888775322 125677888888888888766666554 6788888888
Q ss_pred CCCccccc--CCccccCCCCCCEEeCCCCcCCCCcCcc-ccccccCccccccCcccCccCCCCCCCcccccceeeEeecC
Q 048402 404 RSNNFHGP--LPTRLCDLAFLQILDLADNNLFGTIPKC-INNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEG 480 (677)
Q Consensus 404 ~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (677)
++|++++. +|..+..+++|++|++++|++.+.+|.. +..
T Consensus 385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-------------------------------------- 426 (562)
T 3a79_B 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW-------------------------------------- 426 (562)
T ss_dssp CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC--------------------------------------
T ss_pred CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC--------------------------------------
Confidence 88888752 3456788888888888888887655542 333
Q ss_pred CchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccc-cc
Q 048402 481 EAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQS-MS 559 (677)
Q Consensus 481 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~ 559 (677)
+++|+.|++++|++++..|..+. ++|++|++++|+++ .+|..+.++++|++|++++|+++ .+|.. +.
T Consensus 427 --------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 494 (562)
T 3a79_B 427 --------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494 (562)
T ss_dssp --------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred --------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence 34458899999998877776654 78999999999999 78877779999999999999999 55655 89
Q ss_pred cCCCCCEEEcccCcccccCCCC
Q 048402 560 NLMSLNHLNLSNNKLTGKIPSS 581 (677)
Q Consensus 560 ~l~~L~~L~ls~N~l~~~~p~~ 581 (677)
.+++|+.|++++|++.|.+|..
T Consensus 495 ~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp TCTTCCCEECCSCCBCCCHHHH
T ss_pred cCCCCCEEEecCCCcCCCcchH
Confidence 9999999999999999988753
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-42 Score=389.56 Aligned_cols=360 Identities=20% Similarity=0.268 Sum_probs=270.2
Q ss_pred cccccccChhhhhCCCCCCEEEeecccccee-----------------cCCCCC--CCcCccEEEeecccCCCCCChhcc
Q 048402 139 NKLNGTLSEIHFSNLTKLSWFRVGGNKLTLE-----------------VRHDWI--PPFQLVALGFHNCYVGSRFPQWLH 199 (677)
Q Consensus 139 n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~ 199 (677)
|.+++ +|. .++++++|+.|++++|.+++. .+..+. .+++|+.|++++|.+.+.+|..++
T Consensus 435 N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 67775 776 688888888888888888772 455544 666666666666666666666666
Q ss_pred CCCCCCEEEccCCC-CCC-ccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCC-----CCCC
Q 048402 200 SQKHLQYLNLLNSG-MSD-LFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPL-----ISSN 272 (677)
Q Consensus 200 ~l~~L~~L~l~~n~-i~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----~~~~ 272 (677)
++++|++|++++|+ +++ ..|..+.. ++ ..+..+++|+.|++++|.+. .+|. .+++
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~----------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTR-LA----------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHH-HH----------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred CCCCCCEEECcCCCCcccccchHHHHh-hh----------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 66666777766665 655 44444322 11 01111234444444444444 3332 2456
Q ss_pred ccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCC-CceecccCccccccCCcCcCCCCC--c
Q 048402 273 LVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN-LEILELSNNKFTGKLPNSLGSLTS--L 349 (677)
Q Consensus 273 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L 349 (677)
|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++. |
T Consensus 575 L~~L~Ls~N~l~-~lp-----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp CCEEECTTSCCC-BCC-----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred CCEEECCCCCcc-cch-----hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 677777777766 444 3455889999999999998 88888999999 999999999999 78888877654 9
Q ss_pred cEEECcCCcccccCCccC---c--CCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccC------
Q 048402 350 IWLLLGKNRLSGTIPVSL---K--NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD------ 418 (677)
Q Consensus 350 ~~L~l~~n~~~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------ 418 (677)
+.|++++|++.+.+|... . .+++|+.|++++|.+. .+|..++..+++|+.|++++|+++ .+|..+..
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY 724 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCC
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccc
Confidence 999999999987665322 2 3458999999999998 889888878999999999999999 55554333
Q ss_pred --CCCCCEEeCCCCcCCCCcCcccc--ccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccE
Q 048402 419 --LAFLQILDLADNNLFGTIPKCIN--NITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKE 494 (677)
Q Consensus 419 --l~~L~~L~Ls~n~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 494 (677)
+++|+.|++++|+++ .+|..+. . +++|+.
T Consensus 725 ~nl~~L~~L~Ls~N~L~-~lp~~l~~~~----------------------------------------------l~~L~~ 757 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLT-SLSDDFRATT----------------------------------------------LPYLSN 757 (876)
T ss_dssp TTGGGCCEEECCSSCCC-CCCGGGSTTT----------------------------------------------CTTCCE
T ss_pred cccCCccEEECCCCCCc-cchHHhhhcc----------------------------------------------CCCcCE
Confidence 238999999999998 6666543 3 445699
Q ss_pred EEcccCcccccCCcccCCCCCCcEEeccC------CcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402 495 TDVSRNNLTKSIPLEMTNLKATQSLNFSH------NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN 568 (677)
Q Consensus 495 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 568 (677)
|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|.++++|+.|+|++|++ +.+|..+. ++|+.||
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~Ld 833 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILD 833 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEE
T ss_pred EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEE
Confidence 9999999997 788899999999999976 788889999999999999999999999 58888766 6999999
Q ss_pred cccCcccccCC
Q 048402 569 LSNNKLTGKIP 579 (677)
Q Consensus 569 ls~N~l~~~~p 579 (677)
+++|++...-+
T Consensus 834 Ls~N~l~~i~~ 844 (876)
T 4ecn_A 834 IADNPNISIDV 844 (876)
T ss_dssp CCSCTTCEEEC
T ss_pred CCCCCCCccCh
Confidence 99999875443
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.2e-41 Score=369.00 Aligned_cols=456 Identities=18% Similarity=0.205 Sum_probs=313.1
Q ss_pred cccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCC
Q 048402 3 HLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIE 82 (677)
Q Consensus 3 ~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 82 (677)
..+++++++|.++ .+ |..+. ++|++|+++ ++.+.+..+.+|.++++|++|++++|.+++..|..|..++ +
T Consensus 32 ~~~~l~ls~~~L~-~i-p~~~~--~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~ 101 (562)
T 3a79_B 32 LESMVDYSNRNLT-HV-PKDLP--PRTKALSLS-QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ-----D 101 (562)
T ss_dssp -CCEEECTTSCCC-SC-CTTSC--TTCCEEECC-SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT-----T
T ss_pred CCcEEEcCCCCCc-cC-CCCCC--CCcCEEECC-CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC-----C
Confidence 4478999999998 67 54443 899999999 7888888888999999999999999999998899999999 9
Q ss_pred ccEEEcccCcCccccccccCCCCCCCEEECcCCccccC-CCcCCCCCCCCCEEEccccccccccChhhhhCCCCC--CEE
Q 048402 83 LESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGP-IPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKL--SWF 159 (677)
Q Consensus 83 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L--~~L 159 (677)
|++|++++|.++. +|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+++ . .+..+++| +.|
T Consensus 102 L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L 174 (562)
T 3a79_B 102 LEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHLSCI 174 (562)
T ss_dssp CCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCEEEE
T ss_pred CCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhceeeEE
Confidence 9999999999994 5655 899999999999999863 46899999999999999999974 2 45566666 999
Q ss_pred Eeecccc--ceecCCCCCCCc-CccEEEeecccCCCCCCh-hccCCCCCCEEEccCCCCCCc-cc--hHHHhccCCccEE
Q 048402 160 RVGGNKL--TLEVRHDWIPPF-QLVALGFHNCYVGSRFPQ-WLHSQKHLQYLNLLNSGMSDL-FP--IRFLKSAFQLKFL 232 (677)
Q Consensus 160 ~l~~n~l--~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~i~~~-~~--~~~~~~~~~L~~L 232 (677)
++++|.+ ++..+..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|..... .+ ...+..+++++.+
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 9999998 766666665543 233567788887765554 356788999999999863210 01 1123557788888
Q ss_pred ECCCccCcccc----CCccccccccEEEcccCCCCCCCCCCC-----CCccEEEccCCcccccCChhHhhccCCCCCcCe
Q 048402 233 DLGLNQFHGQI----TDLTKVTQLLFLSVHSNNMSGPLPLIS-----SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIG 303 (677)
Q Consensus 233 ~Ls~n~l~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~ 303 (677)
+++.+.+.+.. +.....++|+.|++++|.+.+.+|... ++++.|.+.+
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~----------------------- 311 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH----------------------- 311 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE-----------------------
T ss_pred EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh-----------------------
Confidence 88877665421 111222467777777777766555443 3444333332
Q ss_pred EecCCCCCcccCC-ccccc---CCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecC
Q 048402 304 LKLKDNSLQGEIP-DCWMS---YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG 379 (677)
Q Consensus 304 L~l~~n~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 379 (677)
+..+.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|++++..|..+.++++|++|+++
T Consensus 312 --~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 385 (562)
T 3a79_B 312 --VKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385 (562)
T ss_dssp --EEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECC
T ss_pred --ccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECC
Confidence 222222 111 11111 134555555555543211 11445556666666666655555555566666666666
Q ss_pred CCcccccCCh--hhhhccCCceEEEcCCCcccccCC-ccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCccc
Q 048402 380 ENEFVGNIPT--WTGERFSRMVVLILRSNNFHGPLP-TRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS 456 (677)
Q Consensus 380 ~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~ 456 (677)
+|++.+ ++. ..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++.+|..+.
T Consensus 386 ~N~l~~-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--------------- 449 (562)
T 3a79_B 386 RNGLKN-FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--------------- 449 (562)
T ss_dssp SSCCCB-TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC---------------
T ss_pred CCCcCC-cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc---------------
Confidence 665552 221 112245666666666666665333 3466677777777777777655443221
Q ss_pred CccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc-cc
Q 048402 457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES-IG 535 (677)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~ 535 (677)
++|+.|++++|+++ .+|..+.++++|++|++++|+++ .+|.. +.
T Consensus 450 ---------------------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 494 (562)
T 3a79_B 450 ---------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494 (562)
T ss_dssp ---------------------------------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred ---------------------------------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence 24578888888887 56766779999999999999999 56655 89
Q ss_pred cCCCCcEEECCCCcccccCc
Q 048402 536 AMRSLESIDFSVNQLSGEIP 555 (677)
Q Consensus 536 ~l~~L~~L~Ls~N~l~~~~p 555 (677)
.+++|+.|++++|++.+..|
T Consensus 495 ~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCTTCCCEECCSCCBCCCHH
T ss_pred cCCCCCEEEecCCCcCCCcc
Confidence 99999999999999986544
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-39 Score=348.80 Aligned_cols=371 Identities=19% Similarity=0.207 Sum_probs=239.5
Q ss_pred CCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEE
Q 048402 105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALG 184 (677)
Q Consensus 105 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 184 (677)
++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...|.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45555555555555444555555555555555555554444444455555555555555555444444444444444444
Q ss_pred eecccCCCCCCh--hccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCC
Q 048402 185 FHNCYVGSRFPQ--WLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM 262 (677)
Q Consensus 185 l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~ 262 (677)
+++|.+.+..+. .+..+++|++|++++|.+++..|..++..+++|++|++++|.+.+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------ 171 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE------------------ 171 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT------------------
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh------------------
Confidence 444444332222 255566666666666666555454434444555555555544433221
Q ss_pred CCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcc--------cccCCCCceecccCcc
Q 048402 263 SGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDC--------WMSYQNLEILELSNNK 334 (677)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~L~~n~ 334 (677)
..+.. + ....++.|++++|.+.+..+.. +..+++|++|++++|.
T Consensus 172 --------------------------~~l~~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 172 --------------------------EDLLN-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp --------------------------TTSGG-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred --------------------------hhhhc-c-ccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 11110 0 0245667777777766544332 2244667777777777
Q ss_pred ccccCCcCcCCC---CCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhh-hhccCCceEEEcCCCcccc
Q 048402 335 FTGKLPNSLGSL---TSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWT-GERFSRMVVLILRSNNFHG 410 (677)
Q Consensus 335 l~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~L~~n~l~~ 410 (677)
+++..|..+... ++|+.|++++|...+... ..+.+.+..+..+ ....++|++|++++|.+.+
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccc
Confidence 766555544332 566677776665543211 0111111111111 1124789999999999998
Q ss_pred cCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhc
Q 048402 411 PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILN 490 (677)
Q Consensus 411 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 490 (677)
..|..+..+++|++|++++|++.+..|..+.++++
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--------------------------------------------- 324 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH--------------------------------------------- 324 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT---------------------------------------------
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCccc---------------------------------------------
Confidence 88999999999999999999998777766665544
Q ss_pred cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402 491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570 (677)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 570 (677)
|++|++++|.+++..|..+.++++|++|++++|++++..|..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 325 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 325 -LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp -CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 4999999999998889999999999999999999998889999999999999999999997777788999999999999
Q ss_pred cCcccccCCCC
Q 048402 571 NNKLTGKIPSS 581 (677)
Q Consensus 571 ~N~l~~~~p~~ 581 (677)
+|++.|.+|..
T Consensus 404 ~N~l~~~~~~~ 414 (455)
T 3v47_A 404 TNPWDCSCPRI 414 (455)
T ss_dssp SSCBCCCTTTT
T ss_pred CCCcccCCCcc
Confidence 99999999964
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.6e-39 Score=344.11 Aligned_cols=386 Identities=19% Similarity=0.191 Sum_probs=292.6
Q ss_pred cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCccc-chhhhhccccCcCCc
Q 048402 5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEI-SEILNIFSGCVSIEL 83 (677)
Q Consensus 5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~~~L 83 (677)
+.++.+++.++ .+ |. + .++|++|+|+ ++.+.+..|..|.++++|++|++++|.+.+.+ +..+..++ +|
T Consensus 13 ~~~~c~~~~l~-~l-p~-l--~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~-----~L 81 (455)
T 3v47_A 13 YNAICINRGLH-QV-PE-L--PAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS-----SL 81 (455)
T ss_dssp TEEECCSSCCS-SC-CC-C--CTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT-----TC
T ss_pred cccCcCCCCcc-cC-CC-C--CCccCEEEec-CCccCcCChhHhccCccccEEECcCCcccceECcccccccc-----cC
Confidence 45677777777 66 33 2 3789999998 77778777888999999999999999887554 56788888 89
Q ss_pred cEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcC--CCCCCCCCEEEccccccccccChhhhhCCCCCCEEEe
Q 048402 84 ESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQS--LGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161 (677)
Q Consensus 84 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l 161 (677)
++|++++|.+++..|..|.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|...+.++++|++|++
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 99999999998888888999999999999999888644444 8889999999999999886656645888899999999
Q ss_pred eccccceecCCCCCCC--cCccEEEeecccCCCCCChhc--------cCCCCCCEEEccCCCCCCccchHHHhc--cCCc
Q 048402 162 GGNKLTLEVRHDWIPP--FQLVALGFHNCYVGSRFPQWL--------HSQKHLQYLNLLNSGMSDLFPIRFLKS--AFQL 229 (677)
Q Consensus 162 ~~n~l~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~--------~~l~~L~~L~l~~n~i~~~~~~~~~~~--~~~L 229 (677)
++|.+.+..+..+... .+++.+++++|.+....+.++ ..+++|++|++++|.+++..+..+... .+++
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 9998887777766554 577888888877766554432 245667777777777766655555432 1456
Q ss_pred cEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCC
Q 048402 230 KFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDN 309 (677)
Q Consensus 230 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 309 (677)
+.|++++|...+... ..+.+.+..+..+.. ...++|+.|++++|
T Consensus 242 ~~L~l~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n 285 (455)
T 3v47_A 242 QSLILSNSYNMGSSF----------------------------------GHTNFKDPDNFTFKG--LEASGVKTCDLSKS 285 (455)
T ss_dssp EEEECTTCTTTSCCT----------------------------------TCCSSCCCCTTTTGG--GTTSCCCEEECCSS
T ss_pred eeEeecccccccccc----------------------------------chhhhccCccccccc--ccccCceEEEecCc
Confidence 666666554432111 011111111111110 11467888888888
Q ss_pred CCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCCh
Q 048402 310 SLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPT 389 (677)
Q Consensus 310 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 389 (677)
.+.+..|..|..+++|++|++++|.+.+..|..|..+++|+.|++++|++++..+..|.++++|++|++++|.+.+..|.
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence 88888888888899999999999999888888888999999999999999888888888999999999999998866666
Q ss_pred hhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCc
Q 048402 390 WTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPK 438 (677)
Q Consensus 390 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 438 (677)
.+. .+++|++|++++|++++..+..+..+++|++|++++|++.+..|.
T Consensus 366 ~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 366 SFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 554 689999999999999977777788999999999999999887773
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.5e-38 Score=332.36 Aligned_cols=399 Identities=23% Similarity=0.264 Sum_probs=188.1
Q ss_pred CCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCC
Q 048402 25 NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQF 104 (677)
Q Consensus 25 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 104 (677)
..++|++|+++ ++.+ +.+|.+++++++|++|++++|.+.+.+|..++.+. +|+.++++.|..
T Consensus 9 ~~~~L~~L~l~-~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~-----~L~~l~l~~c~~----------- 70 (454)
T 1jl5_A 9 SNTFLQEPLRH-SSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR-----EMAVSRLRDCLD----------- 70 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCH-----HHHHHHHHHHHH-----------
T ss_pred ccccchhhhcc-cCch-hhCChhHhcccchhhhhccCCcccccCCcccccch-----hcchhhhhhhhc-----------
Confidence 35778888887 5566 67788888888888888888887777777777666 554333333321
Q ss_pred CCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEE
Q 048402 105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALG 184 (677)
Q Consensus 105 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 184 (677)
.++++|++++|.+++ +|.. .++|++|++++|.+++ +|. ..++|+.|++++|.+++.... .++|++|+
T Consensus 71 ~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~ 137 (454)
T 1jl5_A 71 RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLG 137 (454)
T ss_dssp HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEE
T ss_pred cCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCC----CCCCCEEE
Confidence 234566666666553 2321 2456666666666653 443 135566666666655542211 14666666
Q ss_pred eecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCC
Q 048402 185 FHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSG 264 (677)
Q Consensus 185 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~ 264 (677)
+++|.+.+ +| .++.+++|++|++++|.+++. |. ..++|++|++++|.+++ ++.+..+++|+.|++++|.+++
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~----~~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD----LPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC----CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CC----CcccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc
Confidence 66666665 55 477778888888888877764 22 12477888888887776 3455566666666666666654
Q ss_pred CCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcC
Q 048402 265 PLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLG 344 (677)
Q Consensus 265 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 344 (677)
+|...++|++|++++|.++ .+| .++.+++|++|++++|++++ +|..
T Consensus 210 -l~~~~~~L~~L~l~~n~l~-----------------------------~lp-~~~~l~~L~~L~l~~N~l~~-l~~~-- 255 (454)
T 1jl5_A 210 -LPDLPLSLESIVAGNNILE-----------------------------ELP-ELQNLPFLTTIYADNNLLKT-LPDL-- 255 (454)
T ss_dssp -CCCCCTTCCEEECCSSCCS-----------------------------SCC-CCTTCTTCCEEECCSSCCSS-CCSC--
T ss_pred -CCCCcCcccEEECcCCcCC-----------------------------ccc-ccCCCCCCCEEECCCCcCCc-cccc--
Confidence 2323344555555555444 233 24444455555555554442 2221
Q ss_pred CCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCC-CCCC
Q 048402 345 SLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDL-AFLQ 423 (677)
Q Consensus 345 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~ 423 (677)
.++|+.|++++|++++ +|.. .++|++|++++|.+.+ +|. ..++|++|++++|++++. + .+ ++|+
T Consensus 256 -~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~ 320 (454)
T 1jl5_A 256 -PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLE 320 (454)
T ss_dssp -CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCC
T ss_pred -ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCC
Confidence 2445555555555543 2221 2455555555555542 221 124555555555555531 1 12 3566
Q ss_pred EEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCccc
Q 048402 424 ILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLT 503 (677)
Q Consensus 424 ~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 503 (677)
+|++++|++++ +|.. +++|+.|++++|+++
T Consensus 321 ~L~Ls~N~l~~-lp~~-------------------------------------------------~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 321 ELNVSNNKLIE-LPAL-------------------------------------------------PPRLERLIASFNHLA 350 (454)
T ss_dssp EEECCSSCCSC-CCCC-------------------------------------------------CTTCCEEECCSSCCS
T ss_pred EEECCCCcccc-cccc-------------------------------------------------CCcCCEEECCCCccc
Confidence 66666666553 3321 123466666666665
Q ss_pred ccCCcccCCCCCCcEEeccCCccee--ecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccc
Q 048402 504 KSIPLEMTNLKATQSLNFSHNSFTG--RIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG 576 (677)
Q Consensus 504 ~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 576 (677)
+ +|. .+++|++|++++|++++ .+|..++.+ +.|...+.+|.. +++|++||+++|++++
T Consensus 351 ~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 351 E-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLRE 410 (454)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC---------------------------
T ss_pred c-ccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCc
Confidence 3 443 35666666666666665 444444322 234444455442 3566666666666665
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-38 Score=335.33 Aligned_cols=409 Identities=21% Similarity=0.252 Sum_probs=216.4
Q ss_pred CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCC-------------CEEEccCCcCCccc
Q 048402 2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNL-------------KSINLRGVHLSQEI 68 (677)
Q Consensus 2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L-------------~~L~l~~n~l~~~~ 68 (677)
++|++|++++|.+ |.+ |.+++++++|++|+++ ++.+.+.+|.+++++++| ++|++++|.+++.+
T Consensus 11 ~~L~~L~l~~n~l-~~i-P~~i~~L~~L~~L~l~-~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEM-PVEAENVKSKTEYYNA-WSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHH-HHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccchhhhcccCch-hhC-ChhHhcccchhhhhcc-CCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 5789999999999 599 7889999999999999 778888999999998875 89999999888632
Q ss_pred chhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChh
Q 048402 69 SEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEI 148 (677)
Q Consensus 69 ~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~ 148 (677)
.. .+ +|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|.++ .+|
T Consensus 88 -~~---~~-----~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp-- 147 (454)
T 1jl5_A 88 -EL---PP-----HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLP-- 147 (454)
T ss_dssp -SC---CT-----TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCC--
T ss_pred -CC---cC-----CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCc--
Confidence 21 23 78999999999886 5543 3788999999998874 3321 168999999999887 477
Q ss_pred hhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCC
Q 048402 149 HFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQ 228 (677)
Q Consensus 149 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~ 228 (677)
.++++++|++|++++|.+++.. .. ..+|++|++++|.+.+ +| .++.+++|++|++++|.+++... ..++
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp-~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~-----~~~~ 216 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLP-DL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD-----LPLS 216 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCC-CC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC-----CCTT
T ss_pred ccCCCCCCCEEECCCCcCcccC-CC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC-----CcCc
Confidence 3888999999999998887632 22 2478888888888876 45 57888888888888888876422 1247
Q ss_pred ccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCC
Q 048402 229 LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD 308 (677)
Q Consensus 229 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 308 (677)
|++|++++|.+. .++.+..+++|+.|++++|.+++ +|..+++|++|++++|.+++. |.. +++|++|++++
T Consensus 217 L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l-~~~-------~~~L~~L~ls~ 286 (454)
T 1jl5_A 217 LESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDL-PEL-------PQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCC-CCC-------CTTCCEEECCS
T ss_pred ccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCccccc-Ccc-------cCcCCEEECcC
Confidence 888888888777 34456666677777777766664 233345555555555555431 110 23444555554
Q ss_pred CCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCC-CCCCEEecCCCcccccC
Q 048402 309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNC-TALESLDVGENEFVGNI 387 (677)
Q Consensus 309 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~ 387 (677)
|. +++. |.. .++|+.|++++|++++. + .+ ++|++|++++|++.+ +
T Consensus 287 N~------------------------l~~l-~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-l 332 (454)
T 1jl5_A 287 NI------------------------FSGL-SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-L 332 (454)
T ss_dssp SC------------------------CSEE-SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-C
T ss_pred Cc------------------------cCcc-cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-c
Confidence 44 4431 110 13455555555555431 1 11 355555665555552 4
Q ss_pred ChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC--CcCccccccccCccccccCcccCccCCCCCC
Q 048402 388 PTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG--TIPKCINNITGMVAANSFTRSSQQYLPLPLD 465 (677)
Q Consensus 388 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 465 (677)
|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+..+..- ..
T Consensus 333 p~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n--------~~--------- 387 (454)
T 1jl5_A 333 PAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMN--------SH--------- 387 (454)
T ss_dssp CCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECC--------C----------
T ss_pred ccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhc--------cc---------
Confidence 432 355666666666655 2333 34566666666666665 555554443210 00
Q ss_pred CcccccceeeEeecCCchhhhhhhccccEEEcccCcccc--cCCcccCCCCCCcEEeccCCcceeecccccc
Q 048402 466 GDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTK--SIPLEMTNLKATQSLNFSHNSFTGRIPESIG 535 (677)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 535 (677)
.......+++|+.||+++|++++ .+|. +++.|.+.+|.+.+..|.+..
T Consensus 388 ----------------~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 388 ----------------LAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ----------------ccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHH
Confidence 00011124678999999999987 5553 467788899988876665443
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-35 Score=312.85 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=59.0
Q ss_pred cccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccccccc
Q 048402 22 ALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQL 101 (677)
Q Consensus 22 ~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~ 101 (677)
.+.++++|++|+++ ++.+.+. | .+..+++|++|++++|.+++. + ++.++ +|++|++++|.+++. + +
T Consensus 37 ~~~~l~~L~~L~Ls-~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~-----~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCH-NSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNT-----NLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp EHHHHTTCCEEECC-SSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCT-----TCSEEECCSSCCSCC-C--C
T ss_pred ChhHcCCCCEEEcc-CCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCC-----CCCEEECcCCCCcee-e--c
Confidence 34445555555555 3444432 2 355555555555555555543 1 34444 555555555555542 2 4
Q ss_pred CCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402 102 GQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164 (677)
Q Consensus 102 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n 164 (677)
+++++|++|++++|.+++. | ++.+++|++|++++|.+++ ++ ++++++|+.|++++|
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTC
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCC
Confidence 5555555555555555432 2 4455555555555555542 21 344445555555444
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-34 Score=310.26 Aligned_cols=345 Identities=26% Similarity=0.312 Sum_probs=187.3
Q ss_pred CCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCC
Q 048402 26 LTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFK 105 (677)
Q Consensus 26 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 105 (677)
+++|++|+++ ++.+.. +| .+..+++|++|++++|.+++..+ +..++ +|++|++++|.+++..+ +.+++
T Consensus 45 l~~l~~L~l~-~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~~~~--~~~l~ 112 (466)
T 1o6v_A 45 LDQVTTLQAD-RLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLT-----KLVDILMNNNQIADITP--LANLT 112 (466)
T ss_dssp HHTCCEEECC-SSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEECCSSCCCCCGG--GTTCT
T ss_pred hccccEEecC-CCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccc-----cCCEEECCCCccccChh--hcCCC
Confidence 5667777776 444442 33 36667777777777777765544 66666 67777777777765444 67777
Q ss_pred CCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEe
Q 048402 106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGF 185 (677)
Q Consensus 106 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 185 (677)
+|++|++++|.+++..+ +.++++|++|++++|.+. .++ .+.++++|+.|+++ +.+.... .+..+++|+.|++
T Consensus 113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l 184 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDI 184 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccC-CCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEEC
Confidence 77777777777764422 667777777777777765 343 36677777777775 3333221 2455556666666
Q ss_pred ecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCC
Q 048402 186 HNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGP 265 (677)
Q Consensus 186 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~ 265 (677)
++|.+... ..+..+++|++|++++|.+++..+ ...+++|++|++++|.+.+. +.+..+++|+.|++++|.+.+.
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccc
Confidence 66555432 235556666666666666655544 23355666666666665532 2333444455555544444433
Q ss_pred CCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCC
Q 048402 266 LPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGS 345 (677)
Q Consensus 266 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 345 (677)
.+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++.+..+ +..
T Consensus 259 ~~---------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 259 AP---------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 307 (466)
T ss_dssp GG---------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred hh---------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC
Confidence 32 2224445555555554443222 4445555555555555543222 444
Q ss_pred CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEE
Q 048402 346 LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL 425 (677)
Q Consensus 346 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 425 (677)
+++|+.|++++|++++..| +..+++|++|++++|++.+. + .+ ..+++|+.|++++|++++..| +..+++|+.|
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S-SL-ANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G-GG-TTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h-hh-ccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 5555555555555544333 44455555555555554422 2 11 234555555555555554433 4455555555
Q ss_pred eCCCCcCCC
Q 048402 426 DLADNNLFG 434 (677)
Q Consensus 426 ~Ls~n~l~~ 434 (677)
++++|++++
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 555555543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.6e-35 Score=313.17 Aligned_cols=342 Identities=26% Similarity=0.328 Sum_probs=267.6
Q ss_pred CcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcC
Q 048402 2 IHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSI 81 (677)
Q Consensus 2 ~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~ 81 (677)
+++++|+++++.+. .+ + .+..+++|++|+++ ++.+.+..+ +.++++|++|++++|.+.+..+ +..++
T Consensus 46 ~~l~~L~l~~~~i~-~l-~-~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~----- 112 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SI-D-GVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT----- 112 (466)
T ss_dssp HTCCEEECCSSCCC-CC-T-TGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCT-----
T ss_pred ccccEEecCCCCCc-cC-c-chhhhcCCCEEECC-CCccCCchh--hhccccCCEEECCCCccccChh--hcCCC-----
Confidence 57899999999998 66 3 48899999999999 777775543 9999999999999999997765 88888
Q ss_pred CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEe
Q 048402 82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l 161 (677)
+|++|++++|.+++..+ +.++++|++|++++|.+.+. + .+..+++|++|+++ |.+. .++ .+.++++|+.|++
T Consensus 113 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~-~~~--~~~~l~~L~~L~l 184 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVT-DLK--PLANLTTLERLDI 184 (466)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCC-CCG--GGTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-Cccc-Cch--hhccCCCCCEEEC
Confidence 99999999999997544 99999999999999999853 3 58999999999996 4554 333 3889999999999
Q ss_pred eccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402 162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG 241 (677)
Q Consensus 162 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 241 (677)
++|.+... ..+..+++|+.|++++|.+.+..| ++.+++|++|++++|.+++.. .+..+++|++|++++|.+.+
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch---hhhcCCCCCEEECCCCcccc
Confidence 99998765 347888999999999999987665 778999999999999998862 24568999999999999987
Q ss_pred ccCCccccccccEEEcccCCCCCCCCC-CCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc
Q 048402 242 QITDLTKVTQLLFLSVHSNNMSGPLPL-ISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM 320 (677)
Q Consensus 242 ~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 320 (677)
..+ +..+++|+.|++++|.+.+..+. .+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..| +.
T Consensus 258 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 258 LAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred chh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh--hc
Confidence 665 66778888888888887765542 25677777777777665433 2336677777777777665444 56
Q ss_pred cCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCccc
Q 048402 321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFV 384 (677)
Q Consensus 321 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 384 (677)
.+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 667777777777766643 346666777777777777665554 566667777777777665
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-35 Score=311.75 Aligned_cols=356 Identities=18% Similarity=0.206 Sum_probs=270.2
Q ss_pred CCcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCc
Q 048402 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVS 80 (677)
Q Consensus 1 ~~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 80 (677)
+++|++|++++|.++ .+ | .+..+++|++|+++ ++.+++. | ++.+++|++|++++|.+++. + ++.++
T Consensus 41 l~~L~~L~Ls~n~l~-~~-~-~l~~l~~L~~L~Ls-~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~---- 106 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT-DM-T-GIEKLTGLTKLICT-SNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT---- 106 (457)
T ss_dssp HTTCCEEECCSSCCC-CC-T-TGGGCTTCSEEECC-SSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT----
T ss_pred cCCCCEEEccCCCcc-cC-h-hhcccCCCCEEEcc-CCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC----
Confidence 367899999999988 45 3 68889999999999 6677764 3 88899999999999998875 3 67777
Q ss_pred CCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEE
Q 048402 81 IELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR 160 (677)
Q Consensus 81 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~ 160 (677)
+|++|++++|.+++. + ++++++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|+.|+
T Consensus 107 -~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ 176 (457)
T 3bz5_A 107 -KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLD 176 (457)
T ss_dssp -TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEE
T ss_pred -cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc---ccccCCcCCEEE
Confidence 899999999999864 4 88899999999999998864 3888899999999999655555 367888999999
Q ss_pred eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCc
Q 048402 161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240 (677)
Q Consensus 161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~ 240 (677)
+++|.+++.. +..+++|+.|++++|.+.+. .++.+++|++|++++|+++++ | +..+++|+.|++++|+++
T Consensus 177 ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p---~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 177 CSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D---VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCS
T ss_pred CCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C---ccccCCCCEEEeeCCcCC
Confidence 9999888743 66777888888888877764 367777888888888887774 3 345677788888887777
Q ss_pred cccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc
Q 048402 241 GQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM 320 (677)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 320 (677)
+.. ...+++|+.|++++| +|+.|++++|.+.+.+| ...+++|+.|++++|...+.+|.
T Consensus 247 ~~~--~~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~~~~~------~~~l~~L~~L~Ls~n~~l~~l~~--- 304 (457)
T 3bz5_A 247 ELD--VSTLSKLTTLHCIQT-----------DLLEIDLTHNTQLIYFQ------AEGCRKIKELDVTHNTQLYLLDC--- 304 (457)
T ss_dssp CCC--CTTCTTCCEEECTTC-----------CCSCCCCTTCTTCCEEE------CTTCTTCCCCCCTTCTTCCEEEC---
T ss_pred CcC--HHHCCCCCEEeccCC-----------CCCEEECCCCccCCccc------ccccccCCEEECCCCcccceecc---
Confidence 653 334566777776654 35566777776665544 13467777777777776655553
Q ss_pred cCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceE
Q 048402 321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVV 400 (677)
Q Consensus 321 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 400 (677)
..++|+.|++++| ++|+.|++++|++++. + +..+++|+.|++++|++.+ ++.|..
T Consensus 305 ~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~ 359 (457)
T 3bz5_A 305 QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGK 359 (457)
T ss_dssp TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGG
T ss_pred CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---------cccccc
Confidence 3345555555443 7899999999999974 3 8899999999999999974 356677
Q ss_pred EEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccc
Q 048402 401 LILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINN 442 (677)
Q Consensus 401 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 442 (677)
|++++|.+.|. ..+..|+.+++++|+++|.+|..+..
T Consensus 360 L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 360 IPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp SSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 78899988865 34567888999999999999976543
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=318.60 Aligned_cols=212 Identities=19% Similarity=0.178 Sum_probs=140.1
Q ss_pred CCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEE
Q 048402 297 EPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESL 376 (677)
Q Consensus 297 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 376 (677)
.+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 36778888888888877777788888888888888888886666668888888888888888887777778888888888
Q ss_pred ecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCccc
Q 048402 377 DVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS 456 (677)
Q Consensus 377 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~ 456 (677)
++++|...+.+|...+ ...+|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 206 ~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----------------------- 261 (477)
T 2id5_A 206 EISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS----------------------- 261 (477)
T ss_dssp EEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-----------------------
T ss_pred eCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-----------------------
Confidence 8888877666666555 3446777777777666443345666666666666666554
Q ss_pred CccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccccc
Q 048402 457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA 536 (677)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 536 (677)
+..+..|.++++|++|+|++|++++..|..|.+
T Consensus 262 -----------------------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 262 -----------------------------------------------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp -----------------------------------------------EECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred -----------------------------------------------ccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 333444455555555555555555555555555
Q ss_pred CCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402 537 MRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP 579 (677)
Q Consensus 537 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 579 (677)
+++|+.|++++|++++..+..|..+++|++|++++|++.|.++
T Consensus 295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 5555555555555554444445555555555555555555443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=306.86 Aligned_cols=322 Identities=19% Similarity=0.173 Sum_probs=251.6
Q ss_pred cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402 5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84 (677)
Q Consensus 5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~ 84 (677)
+.++.+++.++ .+ |..+ .+++++|+|+ ++.+.+..+..|.++++|++|++++|.+++..|..|..++ +|+
T Consensus 14 ~~v~c~~~~l~-~i-p~~~--~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~ 83 (477)
T 2id5_A 14 RAVLCHRKRFV-AV-PEGI--PTETRLLDLG-KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-----NLR 83 (477)
T ss_dssp TEEECCSCCCS-SC-CSCC--CTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCC
T ss_pred CEEEeCCCCcC-cC-CCCC--CCCCcEEECC-CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-----cCC
Confidence 57788888887 67 4444 3689999999 7778877788899999999999999999988888888888 899
Q ss_pred EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402 85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164 (677)
Q Consensus 85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n 164 (677)
+|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...|.++++|+.|++++|
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESC
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCC
Confidence 9999999999777777899999999999999998888888999999999999999997 444447889999999999999
Q ss_pred ccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccC
Q 048402 165 KLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT 244 (677)
Q Consensus 165 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 244 (677)
.++......+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+..+...+. .
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~------------------ 223 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-G------------------ 223 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-T------------------
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-C------------------
Confidence 988877777888899999999999998888888999999999999998765543332211 1
Q ss_pred CccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCC
Q 048402 245 DLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQN 324 (677)
Q Consensus 245 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 324 (677)
.+|++|++++|.+++..+.. +..+++|+.|++++|.+++..+..|..+++
T Consensus 224 --------------------------~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 224 --------------------------LNLTSLSITHCNLTAVPYLA----VRHLVYLRFLNLSYNPISTIEGSMLHELLR 273 (477)
T ss_dssp --------------------------CCCSEEEEESSCCCSCCHHH----HTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred --------------------------ccccEEECcCCcccccCHHH----hcCccccCeeECCCCcCCccChhhcccccc
Confidence 13344444444444222222 233677777777777777666667777778
Q ss_pred CceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCccccc
Q 048402 325 LEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGN 386 (677)
Q Consensus 325 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 386 (677)
|++|++++|++++..|..|..+++|+.|++++|++++..+..|..+++|++|++++|++...
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 88888888888777777777788888888888887766666777777888888888877643
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.3e-34 Score=289.07 Aligned_cols=258 Identities=29% Similarity=0.527 Sum_probs=227.3
Q ss_pred CCcCeEecCCCCCcc--cCCcccccCCCCceecccC-ccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCE
Q 048402 299 KSLIGLKLKDNSLQG--EIPDCWMSYQNLEILELSN-NKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALES 375 (677)
Q Consensus 299 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 375 (677)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|++++..|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467788888888887 7888888888889999884 8888888888888889999999999888888888888999999
Q ss_pred EecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCC-CCCEEeCCCCcCCCCcCccccccccCccccccCc
Q 048402 376 LDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLA-FLQILDLADNNLFGTIPKCINNITGMVAANSFTR 454 (677)
Q Consensus 376 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~ 454 (677)
|++++|.+.+.+|..+. .+++|++|++++|.+++.+|..+..++ +|++|++++|++.+.+|..+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~---------- 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---------- 198 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC----------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc----------
Confidence 99999988878887765 688999999999999888888888888 899999999999888887665543
Q ss_pred ccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccc
Q 048402 455 SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI 534 (677)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 534 (677)
|+.|++++|.+++..|..+..+++|++|++++|++++.+|. +
T Consensus 199 -------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~ 240 (313)
T 1ogq_A 199 -------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V 240 (313)
T ss_dssp -------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C
T ss_pred -------------------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c
Confidence 48999999999999999999999999999999999976665 8
Q ss_pred ccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCC-CCCCCCCCCCC
Q 048402 535 GAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-DLCGAPLPKNC 606 (677)
Q Consensus 535 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~~c 606 (677)
..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|....++.++.+++.+| .+||.|.. .|
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 8999999999999999999999999999999999999999999999888899999999999 59998765 45
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-32 Score=288.08 Aligned_cols=311 Identities=21% Similarity=0.226 Sum_probs=216.4
Q ss_pred CCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCC
Q 048402 50 SLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS 129 (677)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 129 (677)
.++++++|+++++.++..++..+..++ +|++|++++|.+++..+..|..+++|++|++++|.+++..|..|++++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhHhcccc-----cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 467889999999888877777788888 899999999998877777888999999999999998877788888899
Q ss_pred CCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEc
Q 048402 130 NLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNL 209 (677)
Q Consensus 130 ~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 209 (677)
+|++|++++|.++ .+|...|.++++|++|++++|.+....+ ..+..+++|++|++
T Consensus 118 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED------------------------DTFQATTSLQNLQL 172 (390)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT------------------------TTTSSCTTCCEEEC
T ss_pred CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh------------------------hhccCCCCCCEEEC
Confidence 9999999999887 6776567888888888888877765443 34455555555555
Q ss_pred cCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCCh
Q 048402 210 LNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSH 289 (677)
Q Consensus 210 ~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 289 (677)
++|.+++... ..+++|+.+++++|.+.+.. ..++|+.|++++|.+.......
T Consensus 173 ~~n~l~~~~~----~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~~~~-------------------- 224 (390)
T 3o6n_A 173 SSNRLTHVDL----SLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPV-------------------- 224 (390)
T ss_dssp CSSCCSBCCG----GGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEECCC--------------------
T ss_pred CCCcCCcccc----ccccccceeecccccccccC----CCCcceEEECCCCeeeeccccc--------------------
Confidence 5555554421 23456666666666554321 1123333333333333221111
Q ss_pred hHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcC
Q 048402 290 YLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKN 369 (677)
Q Consensus 290 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 369 (677)
+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..|..+++|+.|++++|++++ +|..+..
T Consensus 225 --------~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 293 (390)
T 3o6n_A 225 --------NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP 293 (390)
T ss_dssp --------CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC
T ss_pred --------cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC
Confidence 34566666666666532 356677777777777777776667777777777777777777774 3445566
Q ss_pred CCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 048402 370 CTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG 434 (677)
Q Consensus 370 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 434 (677)
+++|++|++++|++. .+|..+. .+++|++|++++|+++.. + +..+++|+.|++++|++..
T Consensus 294 l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 778888888888776 5665554 578888888888887743 2 5677888888888887753
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.5e-33 Score=290.25 Aligned_cols=314 Identities=19% Similarity=0.206 Sum_probs=186.9
Q ss_pred CCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCE
Q 048402 127 HLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQY 206 (677)
Q Consensus 127 ~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 206 (677)
.+++++.|++++|.+. .+|...+.++++|++|++++|.++...+..|..+++|++|++++|.+.+..|..++.+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3567777777777776 666656777777777777777776655555555555555555555555555555555666666
Q ss_pred EEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCccccc
Q 048402 207 LNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGS 286 (677)
Q Consensus 207 L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~ 286 (677)
|++++|.++...+ ..+..+++|+
T Consensus 122 L~L~~n~l~~l~~-~~~~~l~~L~-------------------------------------------------------- 144 (390)
T 3o6n_A 122 LVLERNDLSSLPR-GIFHNTPKLT-------------------------------------------------------- 144 (390)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCC--------------------------------------------------------
T ss_pred EECCCCccCcCCH-HHhcCCCCCc--------------------------------------------------------
Confidence 6665555544322 1112222333
Q ss_pred CChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCcc
Q 048402 287 VSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVS 366 (677)
Q Consensus 287 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 366 (677)
+|++++|.+.+..+..|..+++|++|++++|.+++. .+..+++|+.|++++|.+++.
T Consensus 145 ----------------~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~---- 201 (390)
T 3o6n_A 145 ----------------TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL---- 201 (390)
T ss_dssp ----------------EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE----
T ss_pred ----------------EEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc----
Confidence 333333333323333333344444444444444321 123334444444444444321
Q ss_pred CcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccC
Q 048402 367 LKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM 446 (677)
Q Consensus 367 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l 446 (677)
...++|++|++++|.+. .+|.. ..++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++
T Consensus 202 -~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~- 273 (390)
T 3o6n_A 202 -AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR- 273 (390)
T ss_dssp -ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS-
T ss_pred -CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc-
Confidence 12234555555555554 22222 234566666666665532 34556666666666666666555544444333
Q ss_pred ccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcc
Q 048402 447 VAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSF 526 (677)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 526 (677)
|+.|++++|++++ +|..+..+++|++|++++|++
T Consensus 274 ---------------------------------------------L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 274 ---------------------------------------------LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp ---------------------------------------------CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred ---------------------------------------------CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc
Confidence 3667777777664 455667889999999999999
Q ss_pred eeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402 527 TGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP 579 (677)
Q Consensus 527 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 579 (677)
+ .+|..+..+++|++|++++|+++.. | +..+++|+.|++++|++.|...
T Consensus 308 ~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 308 L-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp C-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred e-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH
Confidence 8 6777788999999999999999854 3 7788999999999999988643
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-32 Score=301.42 Aligned_cols=333 Identities=19% Similarity=0.212 Sum_probs=203.4
Q ss_pred CCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEE
Q 048402 128 LSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYL 207 (677)
Q Consensus 128 l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 207 (677)
+.+++.+++++|.+. .+|...|.++++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567777888777776 6666667778888888887777776555555555555555555555555555555555555555
Q ss_pred EccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccC
Q 048402 208 NLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSV 287 (677)
Q Consensus 208 ~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~ 287 (677)
++++|.+++..+. .+..
T Consensus 129 ~L~~n~l~~l~~~-~~~~-------------------------------------------------------------- 145 (597)
T 3oja_B 129 VLERNDLSSLPRG-IFHN-------------------------------------------------------------- 145 (597)
T ss_dssp ECCSSCCCCCCTT-TTTT--------------------------------------------------------------
T ss_pred EeeCCCCCCCCHH-Hhcc--------------------------------------------------------------
Confidence 5555555443221 1122
Q ss_pred ChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccC
Q 048402 288 SHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSL 367 (677)
Q Consensus 288 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 367 (677)
+++|+.|++++|.+.+..|..|..+++|++|++++|.+++. + +..+++|+.|++++|.+++ +
T Consensus 146 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l 207 (597)
T 3oja_B 146 ----------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----L 207 (597)
T ss_dssp ----------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----E
T ss_pred ----------CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----c
Confidence 23333333333333333333444444444444444444432 1 3334455555555554442 1
Q ss_pred cCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCc
Q 048402 368 KNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMV 447 (677)
Q Consensus 368 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~ 447 (677)
...++|+.|++++|.+. .++... .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 208 ~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L- 280 (597)
T 3oja_B 208 AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL- 280 (597)
T ss_dssp ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-
T ss_pred cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-
Confidence 22345556666665554 222221 2456666666666664 2456666777777777777766656555544433
Q ss_pred cccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcce
Q 048402 448 AANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFT 527 (677)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 527 (677)
+.|++++|.+++ +|..+..+++|+.|+|++|.++
T Consensus 281 ---------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 281 ---------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp ---------------------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred ---------------------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence 677777777775 4566678899999999999999
Q ss_pred eecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCC-CCCCC
Q 048402 528 GRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGN-DLCGA 600 (677)
Q Consensus 528 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~ 600 (677)
.+|..+..+++|+.|++++|.+++. | +..+++|+.|++++|++.|.++.. .+..+....+.++ ..|+.
T Consensus 315 -~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 315 -HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCT
T ss_pred -ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCc
Confidence 6888889999999999999999854 3 677899999999999999875432 2334444444444 45554
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.9e-32 Score=296.44 Aligned_cols=311 Identities=21% Similarity=0.223 Sum_probs=215.9
Q ss_pred CCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCC
Q 048402 50 SLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS 129 (677)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 129 (677)
.+++++.+++++|.+...++..+..++ +|++|++++|.+++..|..|..+++|++|++++|.+++..|..|++++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCC-----CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 457888999998888877777788888 899999999988887777888899999999999988887777888889
Q ss_pred CCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEc
Q 048402 130 NLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNL 209 (677)
Q Consensus 130 ~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 209 (677)
+|++|++++|.++ .+|...|.++++|+.|++++|.+.+. .|..+..+++|++|++
T Consensus 124 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 124 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI------------------------EDDTFQATTSLQNLQL 178 (597)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBC------------------------CTTTTTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCC------------------------ChhhhhcCCcCcEEEC
Confidence 9999999988887 66665678888888888887776644 3444555666666666
Q ss_pred cCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCCh
Q 048402 210 LNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSH 289 (677)
Q Consensus 210 ~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 289 (677)
++|.+++... ..+++|+.|++++|.+.+.. ..+.|+.|++++|.+....+..
T Consensus 179 ~~N~l~~~~~----~~l~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~~~-------------------- 230 (597)
T 3oja_B 179 SSNRLTHVDL----SLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPV-------------------- 230 (597)
T ss_dssp TTSCCSBCCG----GGCTTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEECSC--------------------
T ss_pred cCCCCCCcCh----hhhhhhhhhhcccCcccccc----CCchhheeeccCCccccccccc--------------------
Confidence 6666655421 23456666666666655321 1123444444444333222222
Q ss_pred hHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcC
Q 048402 290 YLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKN 369 (677)
Q Consensus 290 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 369 (677)
.++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++ +|..+..
T Consensus 231 --------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 299 (597)
T 3oja_B 231 --------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP 299 (597)
T ss_dssp --------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC
T ss_pred --------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc
Confidence 2455566666665553 2456667777777777777776667777777777777777777765 3455566
Q ss_pred CCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 048402 370 CTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG 434 (677)
Q Consensus 370 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 434 (677)
+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+++. + +..+++|+.|++++|++.+
T Consensus 300 l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 300 IPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 777777777777776 5666554 577788888888877743 2 5667788888888887753
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8e-33 Score=278.93 Aligned_cols=255 Identities=26% Similarity=0.408 Sum_probs=227.9
Q ss_pred CCccEEEccCCcccc--cCChhHhhccCCCCCcCeEecCC-CCCcccCCcccccCCCCceecccCccccccCCcCcCCCC
Q 048402 271 SNLVYLDLSNNSFSG--SVSHYLCYRINEPKSLIGLKLKD-NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLT 347 (677)
Q Consensus 271 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 347 (677)
.+++.|++++|.+++ .+|..+.. +++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~----l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN----LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG----CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhC----CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 468888888888887 66665544 89999999995 999989999999999999999999999989999999999
Q ss_pred CccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccC-CceEEEcCCCcccccCCccccCCCCCCEEe
Q 048402 348 SLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFS-RMVVLILRSNNFHGPLPTRLCDLAFLQILD 426 (677)
Q Consensus 348 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 426 (677)
+|++|++++|.+++..|..+..+++|++|++++|++.+.+|..+. .++ .|++|++++|.+++.+|..+..++ |++|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 999999999999999999999999999999999999989998877 566 999999999999999999999887 99999
Q ss_pred CCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccC
Q 048402 427 LADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSI 506 (677)
Q Consensus 427 Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 506 (677)
+++|++.+..|..+..+++ |+.|++++|.+++.+
T Consensus 204 Ls~N~l~~~~~~~~~~l~~----------------------------------------------L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKN----------------------------------------------TQKIHLAKNSLAFDL 237 (313)
T ss_dssp CCSSEEEECCGGGCCTTSC----------------------------------------------CSEEECCSSEECCBG
T ss_pred CcCCcccCcCCHHHhcCCC----------------------------------------------CCEEECCCCceeeec
Confidence 9999998777776665544 499999999999766
Q ss_pred CcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402 507 PLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP 579 (677)
Q Consensus 507 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 579 (677)
|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+..|..|
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 65 888999999999999999999999999999999999999999999986 889999999999999655444
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3e-31 Score=272.63 Aligned_cols=306 Identities=22% Similarity=0.303 Sum_probs=156.7
Q ss_pred cCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCC
Q 048402 24 GNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQ 103 (677)
Q Consensus 24 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 103 (677)
..+++|++|+++ ++.+.. ++ .+..+++|++|++++|.+++..+ +..++ +|++|++++|.++.. + .+.+
T Consensus 41 ~~l~~L~~L~l~-~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~-----~L~~L~L~~n~i~~~-~-~~~~ 108 (347)
T 4fmz_A 41 EELESITKLVVA-GEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLV-----KLTNLYIGTNKITDI-S-ALQN 108 (347)
T ss_dssp HHHTTCSEEECC-SSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCT-----TCCEEECCSSCCCCC-G-GGTT
T ss_pred hhcccccEEEEe-CCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCC-----cCCEEEccCCcccCc-h-HHcC
Confidence 345556666665 333332 22 25555556666665555554333 44444 555555555555532 2 3555
Q ss_pred CCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEE
Q 048402 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVAL 183 (677)
Q Consensus 104 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 183 (677)
+++|++|++++|.+.+. +. +..+++|++|++++|.....++ .+.++++|+.|++++|.+....
T Consensus 109 l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~------------- 171 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVT------------- 171 (347)
T ss_dssp CTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCG-------------
T ss_pred CCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCch-------------
Confidence 55555555555555532 22 5555555555555554332222 2455555555555554443221
Q ss_pred EeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCC
Q 048402 184 GFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMS 263 (677)
Q Consensus 184 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~ 263 (677)
+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..
T Consensus 172 -----------~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~--------------- 219 (347)
T 4fmz_A 172 -----------P--IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP-VAN--------------- 219 (347)
T ss_dssp -----------G--GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-GGG---------------
T ss_pred -----------h--hccCCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCch-hhc---------------
Confidence 1 3444555555555555544322 2334455555555554443222 222
Q ss_pred CCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCc
Q 048402 264 GPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSL 343 (677)
Q Consensus 264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 343 (677)
+++|++|++++|.+++..+ +..+++|++|++++|.+++. +.+..+++|++|++++|.+++. ..+
T Consensus 220 ------~~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 220 ------MTRLNSLKIGNNKITDLSP------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp ------CTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred ------CCcCCEEEccCCccCCCcc------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence 3344444444444433221 23355666666666655532 3455666666666666666643 345
Q ss_pred CCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccc
Q 048402 344 GSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFH 409 (677)
Q Consensus 344 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 409 (677)
..+++|+.|++++|++++..+..+..+++|++|++++|++.+..| + ..+++|++|++++|.++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~-~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L-ASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G-GGCTTCSEESSSCC---
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h-hhhhccceeehhhhccc
Confidence 666666666666666666666666666666667776666664333 2 24666777777766654
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=9e-31 Score=269.09 Aligned_cols=304 Identities=22% Similarity=0.276 Sum_probs=225.9
Q ss_pred CCcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCc
Q 048402 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVS 80 (677)
Q Consensus 1 ~~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 80 (677)
+++|++|+++++.+. .+ +.+..+++|++|+++ ++.+.+. +. +..+++|++|++++|.+++. +.+..++
T Consensus 43 l~~L~~L~l~~~~i~-~~--~~~~~~~~L~~L~l~-~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~---- 110 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SI--QGIEYLTNLEYLNLN-GNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLT---- 110 (347)
T ss_dssp HTTCSEEECCSSCCC-CC--TTGGGCTTCCEEECC-SSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCT----
T ss_pred cccccEEEEeCCccc-cc--hhhhhcCCccEEEcc-CCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCC----
Confidence 368999999999997 66 348899999999999 6676654 43 89999999999999999864 3577888
Q ss_pred CCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEE
Q 048402 81 IELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFR 160 (677)
Q Consensus 81 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~ 160 (677)
+|++|++++|.+++..+ +..+++|++|++++|..... +..+..+++|++|++++|.+. .++. +.++++|+.|+
T Consensus 111 -~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 111 -NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYSLS 183 (347)
T ss_dssp -TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEE
T ss_pred -cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcC-Cchh--hccCCCCCEEE
Confidence 99999999999996544 89999999999999976544 445999999999999999987 4443 88999999999
Q ss_pred eeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCc
Q 048402 161 VGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240 (677)
Q Consensus 161 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~ 240 (677)
+++|.+..... +..+++|+.+++++|.+....+ +..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccC
Confidence 99998875443 5556666666666666554433 5556666666666666655433 334555666666655554
Q ss_pred cccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc
Q 048402 241 GQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM 320 (677)
Q Consensus 241 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 320 (677)
+. +.+.. +++|++|++++|.+++. + .+..+++|++|++++|.+.+..+..+.
T Consensus 257 ~~-~~~~~---------------------l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 257 DI-NAVKD---------------------LTKLKMLNVGSNQISDI-S-----VLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp CC-GGGTT---------------------CTTCCEEECCSSCCCCC-G-----GGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred CC-hhHhc---------------------CCCcCEEEccCCccCCC-h-----hhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 32 22222 45666677777766653 1 233478888888888888877778888
Q ss_pred cCCCCceecccCccccccCCcCcCCCCCccEEECcCCccc
Q 048402 321 SYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLS 360 (677)
Q Consensus 321 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 360 (677)
.+++|++|++++|++++..| +..+++|+.|++++|.++
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888888888888886555 778888888888888875
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.2e-34 Score=310.54 Aligned_cols=387 Identities=20% Similarity=0.185 Sum_probs=254.7
Q ss_pred CCcccEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCc----cCchhhcCCCCCCEEEccCCcCCcccchhhhh-c
Q 048402 1 FIHLEYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEG----RIPRSMASLCNLKSINLRGVHLSQEISEILNI-F 75 (677)
Q Consensus 1 ~~~L~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l 75 (677)
.++|++|+|++|.++.......+..+++|++|+++ ++.+.. .++..+..+++|++|++++|.+.+..+..+.. +
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLD-DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEE-SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEcc-CCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 36799999999998743312337789999999999 676663 45778889999999999999998765555443 3
Q ss_pred cccCcCCccEEEcccCcCcc----ccccccCCCCCCCEEECcCCccccCCCcC-----CCCCCCCCEEEccccccccc--
Q 048402 76 SGCVSIELESLDLRSSSISG----HLTDQLGQFKNLDNLDLANNSIVGPIPQS-----LGHLSNLRVLQIYNNKLNGT-- 144 (677)
Q Consensus 76 ~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~i~~~-- 144 (677)
... ..+|++|++++|.++. .++..+..+++|++|++++|.++...+.. ....++|++|++++|.+++.
T Consensus 81 ~~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTP-SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CST-TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhC-CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 311 1159999999999984 46888999999999999999987543433 23467899999999998743
Q ss_pred --cChhhhhCCCCCCEEEeeccccceecCCCCC-----CCcCccEEEeecccCCCC----CChhccCCCCCCEEEccCCC
Q 048402 145 --LSEIHFSNLTKLSWFRVGGNKLTLEVRHDWI-----PPFQLVALGFHNCYVGSR----FPQWLHSQKHLQYLNLLNSG 213 (677)
Q Consensus 145 --l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~ 213 (677)
++. .+..+++|+.|++++|.+.......+. ..++|+.|++++|.+... ++..+..+++|++|++++|.
T Consensus 160 ~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 160 EPLAS-VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHH-HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHH-HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 233 577889999999999988754333322 234667777777666553 35555566666677776666
Q ss_pred CCCccchHH----HhccCCccEEECCCccCccc-----cCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCccc
Q 048402 214 MSDLFPIRF----LKSAFQLKFLDLGLNQFHGQ-----ITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFS 284 (677)
Q Consensus 214 i~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~ 284 (677)
+++.....+ ...+++|++|++++|.++.. ...+.. +++|++|++++|.+.
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~---------------------~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA---------------------KESLKELSLAGNELG 297 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH---------------------CTTCCEEECTTCCCH
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh---------------------CCCcceEECCCCCCc
Confidence 654322221 12345666666666655542 111222 345666666666665
Q ss_pred ccCChhHhhccC-CCCCcCeEecCCCCCccc----CCcccccCCCCceecccCccccccCCcCcCC-----CCCccEEEC
Q 048402 285 GSVSHYLCYRIN-EPKSLIGLKLKDNSLQGE----IPDCWMSYQNLEILELSNNKFTGKLPNSLGS-----LTSLIWLLL 354 (677)
Q Consensus 285 ~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l 354 (677)
+..+..+...+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 444334433322 125677777777776654 3445566677777777777776544433322 567888888
Q ss_pred cCCcccc----cCCccCcCCCCCCEEecCCCcccccCChhhhh----ccCCceEEEcCCCccccc
Q 048402 355 GKNRLSG----TIPVSLKNCTALESLDVGENEFVGNIPTWTGE----RFSRMVVLILRSNNFHGP 411 (677)
Q Consensus 355 ~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~L~~n~l~~~ 411 (677)
++|++++ .++..+..+++|++|++++|++.+.....+.. ....|+.|.+.++.+...
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 8887775 55666777788888888888776432222221 234577777777766543
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3e-33 Score=299.60 Aligned_cols=161 Identities=22% Similarity=0.161 Sum_probs=71.9
Q ss_pred CccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc-----cCCCCceecccCcccccc----CCcC
Q 048402 272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM-----SYQNLEILELSNNKFTGK----LPNS 342 (677)
Q Consensus 272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~ 342 (677)
+|++|++++|.+++.....+...+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 4555555555554433333333333345555555555555433222222 133555555555555432 2334
Q ss_pred cCCCCCccEEECcCCcccccC-----CccCcCCCCCCEEecCCCccccc----CChhhhhccCCceEEEcCCCcccccCC
Q 048402 343 LGSLTSLIWLLLGKNRLSGTI-----PVSLKNCTALESLDVGENEFVGN----IPTWTGERFSRMVVLILRSNNFHGPLP 413 (677)
Q Consensus 343 ~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~ 413 (677)
+..+++|++|++++|+++... +..+..+++|++|++++|.+++. ++..+. .+++|++|++++|.+.+..+
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHH
Confidence 444555555555555544321 11122345555555555555422 222222 34555555555555542221
Q ss_pred cccc-----CCCCCCEEeCCCCcCC
Q 048402 414 TRLC-----DLAFLQILDLADNNLF 433 (677)
Q Consensus 414 ~~~~-----~l~~L~~L~Ls~n~l~ 433 (677)
..+. ..++|++|++++|.++
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHHhccCCccceeeEcCCCCCc
Confidence 1111 1245555555555543
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.3e-29 Score=258.47 Aligned_cols=244 Identities=20% Similarity=0.227 Sum_probs=128.7
Q ss_pred CCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCcc
Q 048402 271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI 350 (677)
Q Consensus 271 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 350 (677)
++|++|++++|.+++..+.. +..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..|..+++|+
T Consensus 78 ~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEKA----FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTCCEEECCSSCCCEECGGG----STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred CCCcEEECCCCccCccCHhH----hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence 34444444444444333332 223555555555555555 2333222 4555666666655544444455556666
Q ss_pred EEECcCCccc--ccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCC
Q 048402 351 WLLLGKNRLS--GTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLA 428 (677)
Q Consensus 351 ~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 428 (677)
.|++++|.++ +..+..+..+ +|++|++++|.+. .+|..++ ++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred EEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 6666666553 2444455555 5666666666555 3444332 455566666666655555555556666666666
Q ss_pred CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCc
Q 048402 429 DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL 508 (677)
Q Consensus 429 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 508 (677)
+|++.+..|..+..+ ++|+.|++++|+++ .+|.
T Consensus 226 ~N~l~~~~~~~~~~l----------------------------------------------~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 226 HNQIRMIENGSLSFL----------------------------------------------PTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp SSCCCCCCTTGGGGC----------------------------------------------TTCCEEECCSSCCC-BCCT
T ss_pred CCcCCcCChhHhhCC----------------------------------------------CCCCEEECCCCcCe-ecCh
Confidence 665554443333332 23366666666665 4555
Q ss_pred ccCCCCCCcEEeccCCcceeecccccccC------CCCcEEECCCCccc--ccCccccccCCCCCEEEcccCc
Q 048402 509 EMTNLKATQSLNFSHNSFTGRIPESIGAM------RSLESIDFSVNQLS--GEIPQSMSNLMSLNHLNLSNNK 573 (677)
Q Consensus 509 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 573 (677)
.+..+++|++|++++|++++..+..|... .+|+.|++++|.+. ...|.+|..+++|+.+++++|+
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 56666666666666666664444444432 45666666666655 4455556666666666666553
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.4e-29 Score=256.33 Aligned_cols=247 Identities=17% Similarity=0.241 Sum_probs=121.3
Q ss_pred CCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCcc
Q 048402 271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI 350 (677)
Q Consensus 271 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 350 (677)
++++.|++++|.+++..+.. +..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCC
T ss_pred CCCeEEECCCCcCCEeChhh----hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--cccc
Confidence 34444444444444433322 222455555555555555444555555555555555555555 2333322 4555
Q ss_pred EEECcCCcccccCCccCcCCCCCCEEecCCCcccc--cCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCC
Q 048402 351 WLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG--NIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLA 428 (677)
Q Consensus 351 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 428 (677)
+|++++|++++..+..|.++++|++|++++|.+.. ..+..+ ..+++|++|++++|.++. +|..+. ++|++|+++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLD 200 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECT
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc-cCCCCcCEEECCCCcccc-CCcccc--ccCCEEECC
Confidence 55555555554444445555555555555555531 222222 245555555555555552 333222 455555555
Q ss_pred CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCc
Q 048402 429 DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL 508 (677)
Q Consensus 429 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 508 (677)
+|++.+..|..+..+++ |+.|++++|.+++..+.
T Consensus 201 ~n~l~~~~~~~~~~l~~----------------------------------------------L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 201 GNKITKVDAASLKGLNN----------------------------------------------LAKLGLSFNSISAVDNG 234 (330)
T ss_dssp TSCCCEECTGGGTTCTT----------------------------------------------CCEEECCSSCCCEECTT
T ss_pred CCcCCccCHHHhcCCCC----------------------------------------------CCEEECCCCcCceeChh
Confidence 55554433433333222 25555555555554444
Q ss_pred ccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCcccccc------CCCCCEEEcccCccc
Q 048402 509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSN------LMSLNHLNLSNNKLT 575 (677)
Q Consensus 509 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~ls~N~l~ 575 (677)
.+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.++.+++++|++.
T Consensus 235 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 5555555555555555555 44555555555555555555555444444432 244555555555553
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.1e-29 Score=255.41 Aligned_cols=285 Identities=19% Similarity=0.195 Sum_probs=154.2
Q ss_pred CccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCCCcCeE
Q 048402 228 QLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGL 304 (677)
Q Consensus 228 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L 304 (677)
+++.++++++.++..+..+ .+.++.|++++|.+++..+.. +++|++|++++|.+++..|..+ ..+++|++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF----APLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT----TTCTTCCEE
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh----cCCCCCCEE
Confidence 4566666666555433322 145566666666665544422 4556666666666655444432 235566666
Q ss_pred ecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccc--cCCccCcCCCCCCEEecCCCc
Q 048402 305 KLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSG--TIPVSLKNCTALESLDVGENE 382 (677)
Q Consensus 305 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~ 382 (677)
++++|.++ .+|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.+.. ..+..+.++++|++|++++|.
T Consensus 106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 66666655 3333322 456666666666665555555666666666666665532 445555566666666666666
Q ss_pred ccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCC
Q 048402 383 FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPL 462 (677)
Q Consensus 383 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~ 462 (677)
+. .+|... .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+
T Consensus 183 l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------------------- 239 (330)
T 1xku_A 183 IT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT------------------- 239 (330)
T ss_dssp CC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS-------------------
T ss_pred cc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC-------------------
Confidence 55 444433 2556666666666665555556666666666666666554333333332
Q ss_pred CCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccccc------
Q 048402 463 PLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA------ 536 (677)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------ 536 (677)
++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 240 ---------------------------~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~ 291 (330)
T 1xku_A 240 ---------------------------PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291 (330)
T ss_dssp ---------------------------TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred ---------------------------CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccc
Confidence 23356666666665 45555566666666666666666444444432
Q ss_pred CCCCcEEECCCCcccc--cCccccccCCCCCEEEcccC
Q 048402 537 MRSLESIDFSVNQLSG--EIPQSMSNLMSLNHLNLSNN 572 (677)
Q Consensus 537 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N 572 (677)
.++|+.|++++|.+.. ..|..|..++.++.+++++|
T Consensus 292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2455666666666542 34455555666666666655
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.6e-29 Score=256.13 Aligned_cols=286 Identities=17% Similarity=0.237 Sum_probs=208.5
Q ss_pred cccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecc
Q 048402 251 QLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILEL 330 (677)
Q Consensus 251 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 330 (677)
+++.++++++.++.......++++.|++++|.+++..+..+ ..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF----KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHh----hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 45666666666654443345678888888888876655433 44788889999988888777888888889999999
Q ss_pred cCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccc--cCChhhhhccCCceEEEcCCCcc
Q 048402 331 SNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVG--NIPTWTGERFSRMVVLILRSNNF 408 (677)
Q Consensus 331 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l 408 (677)
++|.++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.+.. ..+..+. .+ +|++|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD-GL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC-SC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc-CC-ccCEEECcCCCC
Confidence 988888 4555444 788889999888887777778888888889988888852 3333332 44 888888888888
Q ss_pred cccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhh
Q 048402 409 HGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEI 488 (677)
Q Consensus 409 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (677)
++ +|..+. ++|++|++++|.+.+..|..+..+++
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~------------------------------------------- 218 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK------------------------------------------- 218 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTT-------------------------------------------
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCC-------------------------------------------
Confidence 85 454443 68888888888887666665555444
Q ss_pred hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccC------C
Q 048402 489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL------M 562 (677)
Q Consensus 489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~ 562 (677)
|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|... +
T Consensus 219 ---L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 219 ---LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp ---CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred ---CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 478888888888877778888888888888888888 778888888888888888888887766666543 5
Q ss_pred CCCEEEcccCccc--ccCCCC-CCCCCcCcccccCC
Q 048402 563 SLNHLNLSNNKLT--GKIPSS-TQLQSFDASSFTGN 595 (677)
Q Consensus 563 ~L~~L~ls~N~l~--~~~p~~-~~~~~l~~~~~~~n 595 (677)
+|+.|++++|++. +..|.. ..++.++..++.+|
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6888888888886 333321 33445555555443
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=256.64 Aligned_cols=278 Identities=19% Similarity=0.201 Sum_probs=218.1
Q ss_pred ccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceeccc
Q 048402 252 LLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELS 331 (677)
Q Consensus 252 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 331 (677)
....+.+++.++..+....++|++|++++|.+++..+.. +..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHH----hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 334566666666555445668888888888887655543 3458899999999999988888889999999999999
Q ss_pred CccccccCCcCcCCCCCccEEECcCCcccccCC-ccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccc
Q 048402 332 NNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIP-VSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG 410 (677)
Q Consensus 332 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 410 (677)
+|++++..+..|..+++|++|++++|++++..+ ..|..+++|++|++++|...+.++...+..+++|++|++++|.+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 999986555558889999999999999985544 4788899999999999853335544444478999999999999998
Q ss_pred cCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhc
Q 048402 411 PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILN 490 (677)
Q Consensus 411 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 490 (677)
..|..+..+++|++|++++|++. .+|. .....++
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~-~~~~---------------------------------------------~~~~~~~ 222 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHI-LLLE---------------------------------------------IFVDVTS 222 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCST-THHH---------------------------------------------HHHHHTT
T ss_pred cCHHHHhccccCCeecCCCCccc-cchh---------------------------------------------hhhhhcc
Confidence 88889999999999999999874 2222 1233466
Q ss_pred cccEEEcccCcccccCCcccC---CCCCCcEEeccCCccee----ecccccccCCCCcEEECCCCcccccCccc-cccCC
Q 048402 491 LVKETDVSRNNLTKSIPLEMT---NLKATQSLNFSHNSFTG----RIPESIGAMRSLESIDFSVNQLSGEIPQS-MSNLM 562 (677)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~ 562 (677)
+|+.|++++|.+++..+..+. ....++.++++++.+.+ .+|+.+.++++|++|++++|+++ .+|.. |..++
T Consensus 223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~ 301 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT 301 (353)
T ss_dssp TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC
Confidence 779999999999876555443 45678888888888775 47888999999999999999999 55555 68999
Q ss_pred CCCEEEcccCcccccCCC
Q 048402 563 SLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 563 ~L~~L~ls~N~l~~~~p~ 580 (677)
+|++|++++|++.|.+|.
T Consensus 302 ~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 302 SLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TCCEEECCSSCBCCCHHH
T ss_pred CCCEEEeeCCCccCcCCC
Confidence 999999999999998874
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.3e-28 Score=245.10 Aligned_cols=235 Identities=23% Similarity=0.256 Sum_probs=172.5
Q ss_pred CCcCeEecCCCCCcccCCcccccCCCCceecccCcccccc--CCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEE
Q 048402 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK--LPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESL 376 (677)
Q Consensus 299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 376 (677)
+++++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4566666666666644444466677777777777766532 2445556677777777777776 345556777777777
Q ss_pred ecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC-CcCccccccccCccccccCcc
Q 048402 377 DVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG-TIPKCINNITGMVAANSFTRS 455 (677)
Q Consensus 377 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~ 455 (677)
++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l------------ 174 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL------------ 174 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC------------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC------------
Confidence 7777777633332333467778888888887777777777888888888888887765 345544443
Q ss_pred cCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccc
Q 048402 456 SQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIG 535 (677)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 535 (677)
++|++|++++|++++..|..+..+++|++|++++|++++..+..+.
T Consensus 175 ----------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 175 ----------------------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp ----------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred ----------------------------------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 3448888888888887788888899999999999999877777888
Q ss_pred cCCCCcEEECCCCcccccCccccccCC-CCCEEEcccCcccccCCC
Q 048402 536 AMRSLESIDFSVNQLSGEIPQSMSNLM-SLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 536 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~ 580 (677)
.+++|+.|++++|++++..|..+..++ +|++|++++|++.|.++.
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 899999999999999988888888884 899999999999887653
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.3e-27 Score=254.45 Aligned_cols=233 Identities=21% Similarity=0.192 Sum_probs=182.3
Q ss_pred CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEec
Q 048402 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDV 378 (677)
Q Consensus 299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 378 (677)
++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|+.|++++|++++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56677777777777666777777777777777777777766677777777777777777777666666777777777777
Q ss_pred CCCcccccCChhhhhccCCceEEEcCCC-cccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccC
Q 048402 379 GENEFVGNIPTWTGERFSRMVVLILRSN-NFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ 457 (677)
Q Consensus 379 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 457 (677)
++|++. .++...+..+++|+.|++++| .+....+..|..+++|++|++++|++++. |. +.
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~---------------- 215 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN-LT---------------- 215 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC-CT----------------
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc-cc----------------
Confidence 777776 555555556777778888774 34433444677888888888888887632 31 22
Q ss_pred ccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccC
Q 048402 458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM 537 (677)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 537 (677)
.+++|+.|++++|.+++..|..|.++++|+.|++++|++++..|..|.++
T Consensus 216 ------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 216 ------------------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp ------------------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ------------------------------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 24556899999999998889999999999999999999998889999999
Q ss_pred CCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402 538 RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 538 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
++|+.|+|++|++++..++.|..+++|+.|++++|++.|.+..
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 9999999999999987778889999999999999999887753
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=252.61 Aligned_cols=233 Identities=23% Similarity=0.215 Sum_probs=175.6
Q ss_pred CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEec
Q 048402 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDV 378 (677)
Q Consensus 299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 378 (677)
++++.|++++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45666666666666666666667777777777777776666666777777777777777776555556777777777777
Q ss_pred CCCcccccCChhhhhccCCceEEEcCCCc-ccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccC
Q 048402 379 GENEFVGNIPTWTGERFSRMVVLILRSNN-FHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ 457 (677)
Q Consensus 379 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 457 (677)
++|.+. .++...+..+++|++|++++|+ +....+..|.++++|++|++++|+++ .+|. +.
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~---------------- 204 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LT---------------- 204 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CT----------------
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cC----------------
Confidence 777766 4444444467777777777643 33333446777888888888888776 2331 22
Q ss_pred ccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccC
Q 048402 458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM 537 (677)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 537 (677)
.+++|+.|++++|++++..|..|.++++|++|++++|++++..+..|.++
T Consensus 205 ------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 205 ------------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp ------------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred ------------------------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 24556899999999998889999999999999999999998889999999
Q ss_pred CCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402 538 RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 538 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
++|+.|+|++|++++..++.|..+++|+.|++++|++.|.+..
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 9999999999999988888889999999999999999987753
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4e-28 Score=244.46 Aligned_cols=275 Identities=19% Similarity=0.217 Sum_probs=204.2
Q ss_pred EEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCccc--CCcccccCCCCceeccc
Q 048402 254 FLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE--IPDCWMSYQNLEILELS 331 (677)
Q Consensus 254 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~ 331 (677)
.++.+++.++.......+++++|++++|.++...+.. +..+++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhH----hhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4555555555444444567777777777776443332 33477888888888887632 25666778888888888
Q ss_pred CccccccCCcCcCCCCCccEEECcCCcccccCC-ccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccc
Q 048402 332 NNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIP-VSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHG 410 (677)
Q Consensus 332 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 410 (677)
+|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCcccc
Confidence 88887 456667788888888888888876554 5678888888888888888755555443 67888888888888876
Q ss_pred -cCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhh
Q 048402 411 -PLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEIL 489 (677)
Q Consensus 411 -~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 489 (677)
..|..+..+++|++|++++|++.+..|..+..+++
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-------------------------------------------- 200 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS-------------------------------------------- 200 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT--------------------------------------------
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC--------------------------------------------
Confidence 57788888899999999999887666665555444
Q ss_pred ccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCC-CCcEEECCCCcccccCc--cccccCCCCCE
Q 048402 490 NLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMR-SLESIDFSVNQLSGEIP--QSMSNLMSLNH 566 (677)
Q Consensus 490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~ 566 (677)
|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|.+++..+ .....+...+.
T Consensus 201 --L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~ 278 (306)
T 2z66_A 201 --LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 278 (306)
T ss_dssp --CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGG
T ss_pred --CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhh
Confidence 48899999999887777889999999999999999988888898884 99999999999985422 11222344455
Q ss_pred EEcccCcccccCCC
Q 048402 567 LNLSNNKLTGKIPS 580 (677)
Q Consensus 567 L~ls~N~l~~~~p~ 580 (677)
+.+..+.+.|..|.
T Consensus 279 ~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 279 LLVEVERMECATPS 292 (306)
T ss_dssp GBSCGGGCBEEESG
T ss_pred hhccccccccCCch
Confidence 66677888887776
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1e-27 Score=242.97 Aligned_cols=227 Identities=17% Similarity=0.264 Sum_probs=192.7
Q ss_pred CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD 377 (677)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 377 (677)
.+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888887 66777778888888888888888 77888888888888888888888 6677888888888888
Q ss_pred cCCCcccccCChhhh--------hccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccc
Q 048402 378 VGENEFVGNIPTWTG--------ERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAA 449 (677)
Q Consensus 378 l~~n~l~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~ 449 (677)
+++|.+.+.+|..+. ..+++|++|++++|.++ .+|..+..+++|++|++++|++.+ +|..+..+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l------ 228 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL------ 228 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccC------
Confidence 888877778887653 24889999999999988 778888999999999999998874 55445444
Q ss_pred cccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceee
Q 048402 450 NSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR 529 (677)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 529 (677)
++|++|++++|++.+.+|..++++++|++|++++|++.+.
T Consensus 229 ----------------------------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 229 ----------------------------------------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp ----------------------------------------TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred ----------------------------------------CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence 4458999999999999999999999999999999999989
Q ss_pred cccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccc
Q 048402 530 IPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575 (677)
Q Consensus 530 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 575 (677)
+|..+.++++|++|++++|++.+.+|+.+.++++|+.+++..|.+.
T Consensus 269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999877654
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.9e-28 Score=239.20 Aligned_cols=229 Identities=19% Similarity=0.192 Sum_probs=144.5
Q ss_pred eEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCc
Q 048402 303 GLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENE 382 (677)
Q Consensus 303 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 382 (677)
.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 4444444444 233221 2455556666665555555555556666666666666655555556666666666666665
Q ss_pred -ccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCC
Q 048402 383 -FVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLP 461 (677)
Q Consensus 383 -l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~ 461 (677)
+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..++
T Consensus 92 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----------------- 153 (285)
T 1ozn_A 92 QLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG----------------- 153 (285)
T ss_dssp TCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------------
T ss_pred Ccc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-----------------
Confidence 43 33222223556666666666666655566666667777777777766544443333333
Q ss_pred CCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCc
Q 048402 462 LPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLE 541 (677)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 541 (677)
+|++|++++|++++..+..+..+++|++|++++|++++..|..|.++++|+
T Consensus 154 -----------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 154 -----------------------------NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp -----------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred -----------------------------CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 346777777777766666677788888888888888877777788888888
Q ss_pred EEECCCCcccccCccccccCCCCCEEEcccCcccccCCCC
Q 048402 542 SIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS 581 (677)
Q Consensus 542 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 581 (677)
.|++++|.+++..++.+..+++|++|++++|++.|.++..
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 8888888888666666777888888888888887766543
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.5e-29 Score=279.96 Aligned_cols=374 Identities=17% Similarity=0.103 Sum_probs=185.6
Q ss_pred CCCCCCEEEccCCcCCcccchhhhhc-cccCcCCccEEEcccCc-Ccc-ccccccCCCCCCCEEECcCCccccC----CC
Q 048402 50 SLCNLKSINLRGVHLSQEISEILNIF-SGCVSIELESLDLRSSS-ISG-HLTDQLGQFKNLDNLDLANNSIVGP----IP 122 (677)
Q Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l-~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~ 122 (677)
.+++|++|++++|.+++..+..+... +. +|++|++++|. ++. .++....++++|++|++++|.+++. ++
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~----~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~ 185 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARAD----DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH 185 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGG----GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccc----cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH
Confidence 45666666666665555444444432 20 36666666554 111 1122223556666666666655433 11
Q ss_pred cCCCCCCCCCEEEccccccc----cccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCC---CCCC
Q 048402 123 QSLGHLSNLRVLQIYNNKLN----GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVG---SRFP 195 (677)
Q Consensus 123 ~~~~~l~~L~~L~L~~n~i~----~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~ 195 (677)
..+..+++|++|++++|.++ +.++. .+.++++|+.|++++|.+.+. +..+..+++|++|+++.+... ...+
T Consensus 186 ~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHHH-HHHHhhhhHHHhhcccccccccchHHHH
Confidence 22334556666666666554 12222 344556666666666555442 233445555666665542221 1223
Q ss_pred hhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccC--CccccccccEEEcccCCCCC-CCC---CC
Q 048402 196 QWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQIT--DLTKVTQLLFLSVHSNNMSG-PLP---LI 269 (677)
Q Consensus 196 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~l~~n~~~~-~~~---~~ 269 (677)
..+..+++|+.|+++++..... + .++..+++|++|++++|.+++... .+..+++|+.|+++ +.+.. .++ ..
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l-~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEM-P-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQY 340 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTG-G-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHH
T ss_pred HHhhccccccccCccccchhHH-H-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHh
Confidence 3445555666666655422221 2 222345566666666655433211 12334566666665 22221 111 11
Q ss_pred CCCccEEEccC-----------CcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccccc-CCCCceeccc----Cc
Q 048402 270 SSNLVYLDLSN-----------NSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS-YQNLEILELS----NN 333 (677)
Q Consensus 270 ~~~L~~L~l~~-----------n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n 333 (677)
+++|++|++++ +.+++.....+ ...+++|++|++..+.+++..+..+.. +++|+.|+++ .|
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL---AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH---HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHH---HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 45666666662 33332211111 122566777777666666554444443 6667777775 44
Q ss_pred ccccc-----CCcCcCCCCCccEEECcCCc--ccccCCccCc-CCCCCCEEecCCCcccccCChhhhhccCCceEEEcCC
Q 048402 334 KFTGK-----LPNSLGSLTSLIWLLLGKNR--LSGTIPVSLK-NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRS 405 (677)
Q Consensus 334 ~l~~~-----~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~ 405 (677)
.+++. ++..+.++++|+.|+++.|. +++.....+. .+++|++|++++|++++.....+...+++|++|++++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 55532 22224456677777775433 4433322232 3666777777777665432222333567777777777
Q ss_pred Cccccc-CCccccCCCCCCEEeCCCCcCCCC
Q 048402 406 NNFHGP-LPTRLCDLAFLQILDLADNNLFGT 435 (677)
Q Consensus 406 n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~ 435 (677)
|.+++. ++.....+++|++|++++|++++.
T Consensus 498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 776532 233344566777777777776543
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.5e-29 Score=279.98 Aligned_cols=314 Identities=11% Similarity=0.026 Sum_probs=148.0
Q ss_pred ccCCCCCCEEEccCCCCCCccch---HHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCcc
Q 048402 198 LHSQKHLQYLNLLNSGMSDLFPI---RFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLV 274 (677)
Q Consensus 198 ~~~l~~L~~L~l~~n~i~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~ 274 (677)
+..+++|++|++++|.+++.... .+...+++|++|++++|.+.+....+...++|+.|+++........
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-------- 259 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM-------- 259 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC--------
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccch--------
Confidence 34566677777777766533222 2234566777777777766654444444466666666542111000
Q ss_pred EEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCC-cCcCCCCCccEEE
Q 048402 275 YLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP-NSLGSLTSLIWLL 353 (677)
Q Consensus 275 ~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 353 (677)
......+..+++|+.++++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|+.|+
T Consensus 260 --------------~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 260 --------------PEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp --------------TTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred --------------HHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 00011222344555555554322 2344445555566666666555443222 2234555666666
Q ss_pred CcCCcccccCCccCcCCCCCCEEecCC-----------CcccccCChhhhhccCCceEEEcCCCcccccCCccccC-CCC
Q 048402 354 LGKNRLSGTIPVSLKNCTALESLDVGE-----------NEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCD-LAF 421 (677)
Q Consensus 354 l~~n~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~ 421 (677)
++++-..+..+..+..+++|++|++++ +.+++.....+...+++|++|+++.|.+++..+..+.. +++
T Consensus 325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 404 (592)
T 3ogk_B 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404 (592)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence 652222222222234455666666662 33332222222234566666666555555443333333 556
Q ss_pred CCEEeCC----CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEc
Q 048402 422 LQILDLA----DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDV 497 (677)
Q Consensus 422 L~~L~Ls----~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 497 (677)
|+.|+++ .|.+++...+. ........+++|+.|++
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~-----------------------------------------~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDN-----------------------------------------GVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHH-----------------------------------------HHHHHHHHCTTCCEEEE
T ss_pred CcEEEEeecCCCccccCchHHH-----------------------------------------HHHHHHHhCCCCCEEEE
Confidence 6666664 33333210000 00111223444556666
Q ss_pred ccCc--ccccCCcccC-CCCCCcEEeccCCcceee-cccccccCCCCcEEECCCCccccc-CccccccCCCCCEEEcccC
Q 048402 498 SRNN--LTKSIPLEMT-NLKATQSLNFSHNSFTGR-IPESIGAMRSLESIDFSVNQLSGE-IPQSMSNLMSLNHLNLSNN 572 (677)
Q Consensus 498 s~n~--l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N 572 (677)
++|. +++..+..+. .+++|++|++++|++++. ++..+.++++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 5322 3333222222 255566666666665542 233445566666666666665433 2233345566666666666
Q ss_pred ccc
Q 048402 573 KLT 575 (677)
Q Consensus 573 ~l~ 575 (677)
+++
T Consensus 524 ~it 526 (592)
T 3ogk_B 524 RAS 526 (592)
T ss_dssp BCC
T ss_pred cCC
Confidence 654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.6e-26 Score=245.86 Aligned_cols=248 Identities=21% Similarity=0.205 Sum_probs=215.7
Q ss_pred ccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceeccc
Q 048402 252 LLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELS 331 (677)
Q Consensus 252 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 331 (677)
...++.++..++.......+++++|++++|.+++..+..+ ..+++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~----~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF----RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHc----CCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4456666666665544456789999999999987766644 458999999999999998888999999999999999
Q ss_pred CccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccccc
Q 048402 332 NNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP 411 (677)
Q Consensus 332 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 411 (677)
+|++++..+..|..+++|++|++++|+++...+..|..+++|++|++++|...+.++...+..+++|++|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99999877788999999999999999999888889999999999999997655678877677899999999999999854
Q ss_pred CCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhcc
Q 048402 412 LPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNL 491 (677)
Q Consensus 412 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 491 (677)
| .+..+++|+.|++++|++.+..|..+.++++
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---------------------------------------------- 243 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSS---------------------------------------------- 243 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTT----------------------------------------------
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccC----------------------------------------------
Confidence 4 5788999999999999998777776666554
Q ss_pred ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402 492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551 (677)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 551 (677)
|+.|++++|++++..+..|.++++|+.|+|++|++++..++.|..+++|+.|++++|.+.
T Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 499999999999999999999999999999999999777788999999999999999986
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=242.18 Aligned_cols=286 Identities=22% Similarity=0.188 Sum_probs=186.3
Q ss_pred CCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCC
Q 048402 25 NLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQF 104 (677)
Q Consensus 25 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 104 (677)
.|+...+.+++ ++.++ .+|..+. ++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..|.++
T Consensus 29 ~C~~~~~c~~~-~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 29 SCDRNGICKGS-SGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCV-----NLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp EECTTSEEECC-STTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCCeEeeCC-CCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCC-----CCCEEECCCCccCccCHhhcCCC
Confidence 45556667777 55544 4455443 4788888888887776666777777 78888888888777667777788
Q ss_pred CCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccCh-hhhhCCCCCCEEEeecc-ccceecCCCCCCCcCccE
Q 048402 105 KNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSE-IHFSNLTKLSWFRVGGN-KLTLEVRHDWIPPFQLVA 182 (677)
Q Consensus 105 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~ 182 (677)
++|++|++++|.+++..+..+.++++|++|++++|.++ .++. ..+.++++|+.|++++| .+....+..+..+++|++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 88888888888877554445777788888888888776 5554 46777788888888877 466666667777778888
Q ss_pred EEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCC
Q 048402 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM 262 (677)
Q Consensus 183 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~ 262 (677)
|++++|.+.+..|..+..+++|++|++++|.++.. +..+...+++|+.|++++|.+++........
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------- 244 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECLELRDTDLDTFHFSELST------------- 244 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH-HHHHHHHTTTEEEEEEESCBCTTCCCC-----------------
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccc-hhhhhhhcccccEEECCCCcccccccccccc-------------
Confidence 88888877777777888888888888888887554 4444455677777777777766432211000
Q ss_pred CCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcC
Q 048402 263 SGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNS 342 (677)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 342 (677)
....+.++.++++++.+.+..-. .+|..+..+++|++|++++|+++...+..
T Consensus 245 ----~~~~~~l~~l~L~~~~l~~~~l~------------------------~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~ 296 (353)
T 2z80_A 245 ----GETNSLIKKFTFRNVKITDESLF------------------------QVMKLLNQISGLLELEFSRNQLKSVPDGI 296 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHH------------------------HHHHHHHTCTTCCEEECCSSCCCCCCTTT
T ss_pred ----ccccchhhccccccccccCcchh------------------------hhHHHHhcccCCCEEECCCCCCCccCHHH
Confidence 00022334444444433321111 24455666677777777777776333333
Q ss_pred cCCCCCccEEECcCCccccc
Q 048402 343 LGSLTSLIWLLLGKNRLSGT 362 (677)
Q Consensus 343 ~~~l~~L~~L~l~~n~~~~~ 362 (677)
|..+++|++|++++|++.+.
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCC
T ss_pred HhcCCCCCEEEeeCCCccCc
Confidence 46677777777777776643
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.9e-27 Score=234.52 Aligned_cols=236 Identities=17% Similarity=0.197 Sum_probs=179.6
Q ss_pred CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCc-ccccCCccCcCCCCCCEE
Q 048402 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNR-LSGTIPVSLKNCTALESL 376 (677)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L 376 (677)
.+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+ +....+..|..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4567777777777776666677778888888888888877777778888888888888886 666667777888888888
Q ss_pred ecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCccc
Q 048402 377 DVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS 456 (677)
Q Consensus 377 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~ 456 (677)
++++|.+.+..|..+ ..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+
T Consensus 111 ~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------------- 176 (285)
T 1ozn_A 111 HLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL------------- 176 (285)
T ss_dssp ECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-------------
T ss_pred ECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc-------------
Confidence 888888774444433 367888888888888886666678888888888888888874444444443
Q ss_pred CccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccccc
Q 048402 457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA 536 (677)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 536 (677)
++|+.|++++|.+++..|..+.++++|++|++++|++++..++.+..
T Consensus 177 ---------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 177 ---------------------------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp ---------------------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred ---------------------------------cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence 44588899999998888889999999999999999999777778999
Q ss_pred CCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCC
Q 048402 537 MRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS 581 (677)
Q Consensus 537 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 581 (677)
+++|++|++++|.+....+. ..-...++.+..+.+.+.|..|..
T Consensus 224 l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGG
T ss_pred CcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchH
Confidence 99999999999999854332 111233455567888888888863
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.9e-26 Score=244.49 Aligned_cols=248 Identities=22% Similarity=0.223 Sum_probs=214.9
Q ss_pred ccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceeccc
Q 048402 252 LLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELS 331 (677)
Q Consensus 252 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 331 (677)
...++.++..++..+....++++.|++++|.+++..+.. +..+++|++|++++|.+.+..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 455666666666555555678999999999988776654 4458999999999999998888899999999999999
Q ss_pred CccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccccc
Q 048402 332 NNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP 411 (677)
Q Consensus 332 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 411 (677)
+|++++..+..|..+++|+.|++++|+++...+..|..+++|++|++++|...+.++...+..+++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999997777789999999999999999998888899999999999999976656788776778999999999999998 4
Q ss_pred CCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhcc
Q 048402 412 LPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNL 491 (677)
Q Consensus 412 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 491 (677)
+| .+..+++|+.|++++|++++..|..|.++++
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---------------------------------------------- 232 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMH---------------------------------------------- 232 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTT----------------------------------------------
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCcc----------------------------------------------
Confidence 45 4788999999999999998777776666554
Q ss_pred ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402 492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551 (677)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 551 (677)
|+.|++++|++++..+..|.++++|++|+|++|++++..++.|..+++|+.|+|++|.+.
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 499999999999999999999999999999999999777788999999999999999986
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=8.9e-27 Score=236.03 Aligned_cols=225 Identities=20% Similarity=0.255 Sum_probs=192.6
Q ss_pred CCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCcc
Q 048402 271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI 350 (677)
Q Consensus 271 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 350 (677)
+.++.|++++|.++ .+|..+. .+++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..+..+++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~----~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAF----RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGG----GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred cceeEEEccCCCch-hcChhhh----hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 46677777777776 3343333 3788888999888888 78888888999999999999888 6788888899999
Q ss_pred EEECcCCcccccCCccCcC---------CCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCC
Q 048402 351 WLLLGKNRLSGTIPVSLKN---------CTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAF 421 (677)
Q Consensus 351 ~L~l~~n~~~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 421 (677)
.|++++|++.+.+|..+.. +++|++|++++|.+. .+|..+. .+++|++|++++|.+++ +|..+..+++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~~-l~~~l~~l~~ 230 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHHLPK 230 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCCc-CchhhccCCC
Confidence 9999998888788876654 999999999999998 8888765 79999999999999995 6667899999
Q ss_pred CCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCc
Q 048402 422 LQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNN 501 (677)
Q Consensus 422 L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 501 (677)
|++|++++|++.+.+|..+..+++| +.|++++|+
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L----------------------------------------------~~L~L~~n~ 264 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPL----------------------------------------------KRLILKDCS 264 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCC----------------------------------------------CEEECTTCT
T ss_pred CCEEECcCCcchhhhHHHhcCCCCC----------------------------------------------CEEECCCCC
Confidence 9999999999998888877665554 999999999
Q ss_pred ccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402 502 LTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551 (677)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 551 (677)
+.+.+|..+.++++|++|+|++|++.+.+|+.++++++|+.+++..+.+.
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999988776
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.7e-27 Score=240.11 Aligned_cols=226 Identities=22% Similarity=0.258 Sum_probs=141.0
Q ss_pred cCeEecCCCCCc-ccCCcccc-------cCCCCceecccCccccccCCcCc--CCCCCccEEECcCCcccccCCccCcCC
Q 048402 301 LIGLKLKDNSLQ-GEIPDCWM-------SYQNLEILELSNNKFTGKLPNSL--GSLTSLIWLLLGKNRLSGTIPVSLKNC 370 (677)
Q Consensus 301 L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l 370 (677)
++.|++++|.+. ..+|..+. ++++|++|++++|++++..|..+ ..+++|++|++++|++++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 445555555542 23333332 45566666666666655555544 5556666666666666544 4444444
Q ss_pred -----CCCCEEecCCCcccccCChhhhhccCCceEEEcCCCccccc--CCccc--cCCCCCCEEeCCCCcCCCCcCcccc
Q 048402 371 -----TALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGP--LPTRL--CDLAFLQILDLADNNLFGTIPKCIN 441 (677)
Q Consensus 371 -----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~n~l~~~~p~~~~ 441 (677)
++|++|++++|++.+..|..+. .+++|++|++++|++.+. .+..+ ..+++|++|++++|++++. +.
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~--- 218 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SG--- 218 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HH---
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HH---
Confidence 5666666666666533333332 556666666666665443 12222 6677777777777776521 10
Q ss_pred ccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCC-cccCCCCCCcEEe
Q 048402 442 NITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIP-LEMTNLKATQSLN 520 (677)
Q Consensus 442 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ 520 (677)
.....+..+++|++|++++|++++..| ..+..+++|++|+
T Consensus 219 ---------------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 219 ---------------------------------------VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259 (312)
T ss_dssp ---------------------------------------HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred ---------------------------------------HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence 001122335667888888888887664 4566788899999
Q ss_pred ccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccc
Q 048402 521 FSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG 576 (677)
Q Consensus 521 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 576 (677)
+++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 260 Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 260 LSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9999988 7777766 7899999999999855 66 8888999999999998875
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.1e-26 Score=231.46 Aligned_cols=240 Identities=18% Similarity=0.148 Sum_probs=167.3
Q ss_pred ccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEE
Q 048402 273 LVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWL 352 (677)
Q Consensus 273 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 352 (677)
++..+++.+.+...... .+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|
T Consensus 12 l~i~~ls~~~l~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 12 YKIEKVTDSSLKQALAS----LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEESCCTTTHHHHHHH----HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred eeEeeccccchhhhHHH----HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 34445555555432222 22335678888888888877666778888888888888888875544 7778888888
Q ss_pred ECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 048402 353 LLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432 (677)
Q Consensus 353 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 432 (677)
++++|++++.. ..++|++|++++|.+.+..+. .+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus 86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 88888877432 337888888888887643332 357788888888888876677777788888888888877
Q ss_pred CCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCC
Q 048402 433 FGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTN 512 (677)
Q Consensus 433 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 512 (677)
.+..|..+. ..+++|++|++++|.+++.. ....
T Consensus 157 ~~~~~~~~~---------------------------------------------~~l~~L~~L~L~~N~l~~~~--~~~~ 189 (317)
T 3o53_A 157 DTVNFAELA---------------------------------------------ASSDTLEHLNLQYNFIYDVK--GQVV 189 (317)
T ss_dssp CEEEGGGGG---------------------------------------------GGTTTCCEEECTTSCCCEEE--CCCC
T ss_pred CcccHHHHh---------------------------------------------hccCcCCEEECCCCcCcccc--cccc
Confidence 654443321 12445578888888877552 2334
Q ss_pred CCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccc
Q 048402 513 LKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG 576 (677)
Q Consensus 513 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 576 (677)
+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.|
T Consensus 190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 7788888888888874 4445777888888888888887 567777778888888888888873
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.5e-24 Score=236.21 Aligned_cols=261 Identities=27% Similarity=0.306 Sum_probs=155.5
Q ss_pred ccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCC
Q 048402 229 LKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKD 308 (677)
Q Consensus 229 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 308 (677)
++.|++++|.++..+..+. ++|+.|++++|.++. +|..+++|++|++++|.+++... .+++|++|++++
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV--------LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCCC--------CCTTCCEEEECS
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCCC--------CCCCCCEEECcC
Confidence 4455555555443322222 455555555555543 22245566666666666553221 246666666666
Q ss_pred CCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCC
Q 048402 309 NSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIP 388 (677)
Q Consensus 309 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 388 (677)
|.+++ +|. .+++|+.|++++|++++ +|.. +++|+.|++++|++++ +|. .+++|+.|++++|.+. .+|
T Consensus 111 N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~ 177 (622)
T 3g06_A 111 NPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP 177 (622)
T ss_dssp CCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC
T ss_pred CcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc
Confidence 66653 232 45566666666666663 3432 3666777777776664 232 2356677777777665 455
Q ss_pred hhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcc
Q 048402 389 TWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDV 468 (677)
Q Consensus 389 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 468 (677)
..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|..
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~----------------------------- 219 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL----------------------------- 219 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC-----------------------------
T ss_pred ----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC-----------------------------
Confidence 135667777777777664 333 2356777777777665 22211
Q ss_pred cccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCC
Q 048402 469 ILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVN 548 (677)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 548 (677)
+++|+.|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|
T Consensus 220 --------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 220 --------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp --------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred --------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCC
Confidence 2345777777777774 44 44567777777777777 4554 4567777778777
Q ss_pred cccccCccccccCCCCCEEEcccCcccccCCC
Q 048402 549 QLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 549 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 272 ~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 272 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 777 6677777777777788877777766554
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.1e-25 Score=218.11 Aligned_cols=210 Identities=20% Similarity=0.182 Sum_probs=143.9
Q ss_pred CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL 403 (677)
Q Consensus 324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 403 (677)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.+.+..+..+ ..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh-cCCccccEEEC
Confidence 56666666666665555556666666666666666665555556666666666666666653333322 25666666666
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCCcCCCC-cCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCc
Q 048402 404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGT-IPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEA 482 (677)
Q Consensus 404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (677)
++|.+.+..+..+..+++|++|++++|++.+. +|..+.++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~------------------------------------- 150 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN------------------------------------- 150 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-------------------------------------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC-------------------------------------
Confidence 66666655555566777777777777776542 3554444333
Q ss_pred hhhhhhhccccEEEcccCcccccCCcccCCCCCCc----EEeccCCcceeecccccccCCCCcEEECCCCcccccCcccc
Q 048402 483 IEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQ----SLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSM 558 (677)
Q Consensus 483 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 558 (677)
|++|++++|++++..+..+..+++|+ +|++++|++++..+..+.. .+|++|++++|++++..+..|
T Consensus 151 ---------L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 151 ---------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp ---------CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTT
T ss_pred ---------CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHh
Confidence 37777777777766666676666666 8999999999665555544 589999999999997777778
Q ss_pred ccCCCCCEEEcccCcccccCCCC
Q 048402 559 SNLMSLNHLNLSNNKLTGKIPSS 581 (677)
Q Consensus 559 ~~l~~L~~L~ls~N~l~~~~p~~ 581 (677)
..+++|++|++++|++.|.+|..
T Consensus 221 ~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccccEEEccCCcccccCCch
Confidence 99999999999999999998864
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.6e-24 Score=234.33 Aligned_cols=270 Identities=25% Similarity=0.295 Sum_probs=175.3
Q ss_pred CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEe
Q 048402 82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l 161 (677)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 5777888877777 4555544 67777777777777 3444 4577777777777776 5554 4566666666
Q ss_pred eccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402 162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG 241 (677)
Q Consensus 162 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 241 (677)
++|.++. +|. .+++|+.|++++|.++.+.. .+++|++|++++|.+++
T Consensus 109 s~N~l~~-------------------------l~~---~l~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 109 FSNPLTH-------------------------LPA---LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLAS 155 (622)
T ss_dssp CSCCCCC-------------------------CCC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSC
T ss_pred cCCcCCC-------------------------CCC---CCCCcCEEECCCCCCCcCCC-----CCCCCCEEECcCCcCCC
Confidence 6665542 222 34567777777777666432 13566666666666654
Q ss_pred ccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccccc
Q 048402 242 QITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321 (677)
Q Consensus 242 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 321 (677)
.. ..+++|+.|++++|.+++.. ..+++|+.|++++|.+++ +|. .
T Consensus 156 l~------------------------~~~~~L~~L~L~~N~l~~l~--------~~~~~L~~L~Ls~N~l~~-l~~---~ 199 (622)
T 3g06_A 156 LP------------------------ALPSELCKLWAYNNQLTSLP--------MLPSGLQELSVSDNQLAS-LPT---L 199 (622)
T ss_dssp CC------------------------CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSC-CCC---C
T ss_pred cC------------------------CccCCCCEEECCCCCCCCCc--------ccCCCCcEEECCCCCCCC-CCC---c
Confidence 22 22345555555555554421 124566666666666663 332 2
Q ss_pred CCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEE
Q 048402 322 YQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVL 401 (677)
Q Consensus 322 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 401 (677)
+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +| ..+++|+.|++++|.+. .+|. .+++|+.|
T Consensus 200 ~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L 266 (622)
T 3g06_A 200 PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSL 266 (622)
T ss_dssp CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEE
T ss_pred cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEE
Confidence 356777777777776 34432 3677888888887774 34 34577888888888876 5665 36788888
Q ss_pred EcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccC
Q 048402 402 ILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGM 446 (677)
Q Consensus 402 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l 446 (677)
++++|+++ .+|..+..+++|+.|++++|++++..|..+..++..
T Consensus 267 ~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp ECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred eCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 88888888 667778888888888888888888777777666543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.2e-26 Score=231.30 Aligned_cols=237 Identities=21% Similarity=0.204 Sum_probs=130.3
Q ss_pred CccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEe
Q 048402 82 ELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRV 161 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l 161 (677)
+|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++|.++ .++ ..++|+.|++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~~L~l 106 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHA 106 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCCEEEC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcCEEEC
Confidence 45555555555554444455555555555555555543322 455555555555555554 222 2245555555
Q ss_pred eccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcc
Q 048402 162 GGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHG 241 (677)
Q Consensus 162 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 241 (677)
++|.+++..... .++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+...+++|++|++++|.+++
T Consensus 107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 555555443332 23455666666666555555666677777777777777766565555556677777777777664
Q ss_pred ccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccccc
Q 048402 242 QITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMS 321 (677)
Q Consensus 242 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 321 (677)
.. ....+ ++|++|++++|.+++..+. + ..+++|+.|++++|.++ .+|..+..
T Consensus 184 ~~-~~~~l---------------------~~L~~L~Ls~N~l~~l~~~-~----~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 184 VK-GQVVF---------------------AKLKTLDLSSNKLAFMGPE-F----QSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EE-CCCCC---------------------TTCCEEECCSSCCCEECGG-G----GGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cc-ccccc---------------------ccCCEEECCCCcCCcchhh-h----cccCcccEEECcCCccc-chhhHhhc
Confidence 42 22223 3444455555544433222 2 22456666666666665 34555666
Q ss_pred CCCCceecccCcccc-ccCCcCcCCCCCccEEECcCC
Q 048402 322 YQNLEILELSNNKFT-GKLPNSLGSLTSLIWLLLGKN 357 (677)
Q Consensus 322 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n 357 (677)
+++|+.|++++|.+. +..+..+..+++|+.++++++
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 666666666666665 455555666666666666633
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.3e-25 Score=238.12 Aligned_cols=228 Identities=18% Similarity=0.136 Sum_probs=189.8
Q ss_pred hhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCc
Q 048402 289 HYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLK 368 (677)
Q Consensus 289 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 368 (677)
..+......+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|+.|++++|.+++..+
T Consensus 24 ~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~---- 97 (487)
T 3oja_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV---- 97 (487)
T ss_dssp HHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----
T ss_pred HHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----
Confidence 3343333445689999999999998888899999999999999999987665 8899999999999999985433
Q ss_pred CCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCcc
Q 048402 369 NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVA 448 (677)
Q Consensus 369 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~ 448 (677)
.++|++|++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+.
T Consensus 98 -~~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~------- 165 (487)
T 3oja_A 98 -GPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA------- 165 (487)
T ss_dssp -CTTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-------
T ss_pred -CCCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-------
Confidence 38999999999999854433 468999999999999988888899999999999999999876665543
Q ss_pred ccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCccee
Q 048402 449 ANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTG 528 (677)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 528 (677)
..+++|+.|+|++|.+++..+ ...+++|+.|+|++|.+++
T Consensus 166 --------------------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 166 --------------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp --------------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE
T ss_pred --------------------------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC
Confidence 124556999999999997633 4468999999999999996
Q ss_pred ecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccc
Q 048402 529 RIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTG 576 (677)
Q Consensus 529 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 576 (677)
. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.|
T Consensus 206 ~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 206 M-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp E-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred C-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 5 4458999999999999999994 78889999999999999999984
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=8.4e-27 Score=235.02 Aligned_cols=248 Identities=20% Similarity=0.256 Sum_probs=204.2
Q ss_pred CCCcCeEecCCCCCcccCCcccccCCCCceecccCcccc-ccCCcCcC-------CCCCccEEECcCCcccccCCccC--
Q 048402 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFT-GKLPNSLG-------SLTSLIWLLLGKNRLSGTIPVSL-- 367 (677)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~-- 367 (677)
.++|+++++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 46788999999998 667666554 999999999995 44565554 68999999999999998888876
Q ss_pred cCCCCCCEEecCCCcccccCChhhhhcc-----CCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCc--Cccc
Q 048402 368 KNCTALESLDVGENEFVGNIPTWTGERF-----SRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTI--PKCI 440 (677)
Q Consensus 368 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~ 440 (677)
..+++|++|++++|.+.+. |..+. .+ ++|++|++++|++.+..+..+..+++|++|++++|++.+.+ |..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8999999999999999865 76554 45 89999999999999888899999999999999999976542 2111
Q ss_pred cccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccc---cCCcccCCCCCCc
Q 048402 441 NNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTK---SIPLEMTNLKATQ 517 (677)
Q Consensus 441 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~L~ 517 (677)
.+..+++|++|++++|++++ .....+.++++|+
T Consensus 196 --------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 196 --------------------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp --------------------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred --------------------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence 01235667999999999983 2224456889999
Q ss_pred EEeccCCcceeecc-cccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCCCCCCCcCcccccCCC
Q 048402 518 SLNFSHNSFTGRIP-ESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSSTQLQSFDASSFTGND 596 (677)
Q Consensus 518 ~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~ 596 (677)
+|++++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|++||+++|++++. |....+..++.+++.+|.
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 99999999998775 56778899999999999999 7888776 8999999999999977 667778888888888887
Q ss_pred CCC
Q 048402 597 LCG 599 (677)
Q Consensus 597 l~~ 599 (677)
+.+
T Consensus 308 l~~ 310 (312)
T 1wwl_A 308 FLD 310 (312)
T ss_dssp TTC
T ss_pred CCC
Confidence 664
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.1e-28 Score=268.56 Aligned_cols=414 Identities=14% Similarity=0.077 Sum_probs=240.8
Q ss_pred EEEccCCCCceecCCccccCCCCCCEEecCCCCCCC--cc------------CchhhcCCCCCCEEEccCCcCCcccchh
Q 048402 6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPE--GR------------IPRSMASLCNLKSINLRGVHLSQEISEI 71 (677)
Q Consensus 6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~--~~------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 71 (677)
.++++.+... .+...+.++++|++|+++++.... +. ++.....+++|++|++++|.+++..+..
T Consensus 47 ~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 47 KVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp EEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred EEeecccccc--CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 4555554332 224456677777777777332111 00 1122345677888888877777666555
Q ss_pred hh-hccccCcCCccEEEcccC-cCccc-cccccCCCCCCCEEECcCCccccCCCcCC----CCCCCCCEEEccccc--cc
Q 048402 72 LN-IFSGCVSIELESLDLRSS-SISGH-LTDQLGQFKNLDNLDLANNSIVGPIPQSL----GHLSNLRVLQIYNNK--LN 142 (677)
Q Consensus 72 ~~-~l~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~--i~ 142 (677)
+. .++ +|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +.
T Consensus 125 l~~~~~-----~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~ 199 (594)
T 2p1m_B 125 IAKSFK-----NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199 (594)
T ss_dssp HHHHCT-----TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCC
T ss_pred HHHhCC-----CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCC
Confidence 54 566 7888888777 44432 34444567778888888777665443333 356678888887775 22
Q ss_pred cccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCC------CCCChhccCCCCCCEE-EccCCCCC
Q 048402 143 GTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVG------SRFPQWLHSQKHLQYL-NLLNSGMS 215 (677)
Q Consensus 143 ~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~------~~~~~~~~~l~~L~~L-~l~~n~i~ 215 (677)
.......+.++++|+.|++++|......+..+..+++|+.|+++.+... ..++..+.++++|+.| .+.+....
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~ 279 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG
T ss_pred HHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh
Confidence 1111112345677888888776322223444455667777775544210 0123356677777777 33322211
Q ss_pred CccchHHHhccCCccEEECCCccCcccc-CC-ccccccccEEEcccCCCCCCC-C---CCCCCccEEEccC---------
Q 048402 216 DLFPIRFLKSAFQLKFLDLGLNQFHGQI-TD-LTKVTQLLFLSVHSNNMSGPL-P---LISSNLVYLDLSN--------- 280 (677)
Q Consensus 216 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~-~~~~~~L~~L~l~~n~~~~~~-~---~~~~~L~~L~l~~--------- 280 (677)
. .+ .+...+++|++|++++|.+++.. .. ...+++|+.|++++| +.... + ..+++|++|++++
T Consensus 280 ~-l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 280 Y-LP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp G-GG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred h-HH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence 1 11 22234567777777777755321 11 234477777777766 32111 1 1256788887733
Q ss_pred CcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccc-cCCCCceeccc--C----cccccc-----CCcCcCCCCC
Q 048402 281 NSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWM-SYQNLEILELS--N----NKFTGK-----LPNSLGSLTS 348 (677)
Q Consensus 281 n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~ 348 (677)
+.+++.....+. ..+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++. ++..+..+++
T Consensus 357 ~~l~~~~l~~l~---~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 357 VALTEQGLVSVS---MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp SCCCHHHHHHHH---HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHH---HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 333322222222 1267888888877777765554554 57888888888 3 445421 1122556778
Q ss_pred ccEEECcCCcccccCCccCcC-CCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCc-cccCCCCCCEEe
Q 048402 349 LIWLLLGKNRLSGTIPVSLKN-CTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPT-RLCDLAFLQILD 426 (677)
Q Consensus 349 L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 426 (677)
|+.|++++ .++......+.. +++|++|++++|.+++.....+...+++|++|++++|.+++.... ....+++|+.|+
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 88888876 555444444444 788888888888886555555544688888888888888643322 344578888888
Q ss_pred CCCCcCC
Q 048402 427 LADNNLF 433 (677)
Q Consensus 427 Ls~n~l~ 433 (677)
+++|+++
T Consensus 513 l~~~~~~ 519 (594)
T 2p1m_B 513 MSSCSVS 519 (594)
T ss_dssp EESSCCB
T ss_pred eeCCCCC
Confidence 8888874
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=7e-28 Score=266.65 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=49.6
Q ss_pred hccccEEEcccCcccccCCccc-CCCCCCcEEeccCCcceeeccc-ccccCCCCcEEECCCCcccccCcccc-ccCCCCC
Q 048402 489 LNLVKETDVSRNNLTKSIPLEM-TNLKATQSLNFSHNSFTGRIPE-SIGAMRSLESIDFSVNQLSGEIPQSM-SNLMSLN 565 (677)
Q Consensus 489 l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~ 565 (677)
+++|+.|++++|.+++.....+ .++++|++|++++|.+++.... ....+++|++|++++|+++......+ ..++.|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 4556777777777655433333 5567777777777777543332 33456777777777777654333334 3456665
Q ss_pred EEEcccCc
Q 048402 566 HLNLSNNK 573 (677)
Q Consensus 566 ~L~ls~N~ 573 (677)
...+..+.
T Consensus 535 i~~~~~~~ 542 (594)
T 2p1m_B 535 VEVIDERG 542 (594)
T ss_dssp EEEECSSS
T ss_pred EEEecCCC
Confidence 55555443
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.5e-24 Score=211.11 Aligned_cols=207 Identities=19% Similarity=0.219 Sum_probs=153.0
Q ss_pred CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL 403 (677)
Q Consensus 324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 403 (677)
+.+.++++++.++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|.+. .++...+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 3556666666666 3444332 45666666666666555556666677777777776665 555555445677777777
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCch
Q 048402 404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAI 483 (677)
Q Consensus 404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (677)
++|.+.+..+..+..+++|++|++++|++.+..|..+..++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------------------- 133 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT--------------------------------------- 133 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT---------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc---------------------------------------
Confidence 77777765556667777788888887777655554444433
Q ss_pred hhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCC
Q 048402 484 EYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMS 563 (677)
Q Consensus 484 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 563 (677)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++
T Consensus 134 -------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 134 -------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp -------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred -------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 3478888888888767777899999999999999999777778999999999999999999777777999999
Q ss_pred CCEEEcccCcccccCCC
Q 048402 564 LNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 564 L~~L~ls~N~l~~~~p~ 580 (677)
|+.|++++|++.|.++.
T Consensus 207 L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 207 LKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CCEEECCSSCBCCSSSS
T ss_pred CCEEEecCCCeeCCCcc
Confidence 99999999999998864
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-25 Score=239.86 Aligned_cols=236 Identities=22% Similarity=0.189 Sum_probs=190.5
Q ss_pred CCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCc
Q 048402 270 SSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL 349 (677)
Q Consensus 270 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 349 (677)
+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..| +..+++|++|++++|.+++..+ .++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L 101 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL----APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSI 101 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG----TTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTC
T ss_pred CCCccEEEeeCCcCCCCCHHHH----hCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCc
Confidence 3467777777777776655544 448889999999998886655 8888999999999999885432 3789
Q ss_pred cEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCcccc-CCCCCCEEeCC
Q 048402 350 IWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLC-DLAFLQILDLA 428 (677)
Q Consensus 350 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls 428 (677)
+.|++++|.+++..+. .+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++..|..+. .+++|+.|+++
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 9999999999876654 357899999999999866565554 689999999999999987777775 78999999999
Q ss_pred CCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCc
Q 048402 429 DNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPL 508 (677)
Q Consensus 429 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 508 (677)
+|.+++..+.. .+++|+.|++++|.+++.+|
T Consensus 178 ~N~l~~~~~~~------------------------------------------------~l~~L~~L~Ls~N~l~~~~~- 208 (487)
T 3oja_A 178 YNFIYDVKGQV------------------------------------------------VFAKLKTLDLSSNKLAFMGP- 208 (487)
T ss_dssp TSCCCEEECCC------------------------------------------------CCTTCCEEECCSSCCCEECG-
T ss_pred CCccccccccc------------------------------------------------cCCCCCEEECCCCCCCCCCH-
Confidence 99887442211 14567999999999997544
Q ss_pred ccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc-ccCccccccCCCCCEEEcc
Q 048402 509 EMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS-GEIPQSMSNLMSLNHLNLS 570 (677)
Q Consensus 509 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 570 (677)
.+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5899999999999999999 47888999999999999999998 6778888888888888886
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.1e-23 Score=209.23 Aligned_cols=207 Identities=19% Similarity=0.183 Sum_probs=150.9
Q ss_pred cccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCc
Q 048402 319 WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM 398 (677)
Q Consensus 319 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 398 (677)
+.+++++++++++++.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+.+ ++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcC
Confidence 445566666666666665 3443332 466666666666666666666667777777777776653 3322 256777
Q ss_pred eEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEee
Q 048402 399 VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS 478 (677)
Q Consensus 399 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (677)
++|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~--------------------------------- 125 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--------------------------------- 125 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC---------------------------------
Confidence 77777777776 55666777788888888888777555555554443
Q ss_pred cCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCcccc
Q 048402 479 EGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSM 558 (677)
Q Consensus 479 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 558 (677)
|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|..+
T Consensus 126 -------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~ 191 (290)
T 1p9a_G 126 -------------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191 (290)
T ss_dssp -------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred -------------CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence 478888888888777777889999999999999999666667888999999999999998 778888
Q ss_pred ccCCCCCEEEcccCcccccCC
Q 048402 559 SNLMSLNHLNLSNNKLTGKIP 579 (677)
Q Consensus 559 ~~l~~L~~L~ls~N~l~~~~p 579 (677)
...++|+.+++++|++.|.+.
T Consensus 192 ~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 192 FGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp TTTCCCSEEECCSCCBCCSGG
T ss_pred cccccCCeEEeCCCCccCcCc
Confidence 888899999999999988653
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.3e-23 Score=203.56 Aligned_cols=227 Identities=19% Similarity=0.180 Sum_probs=169.1
Q ss_pred EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccE
Q 048402 6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELES 85 (677)
Q Consensus 6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~ 85 (677)
..+-++..+. .+ |..+. ++|++|+++ ++.+.+..+..+.++++|++|++++|.+++..+..+..++ +|++
T Consensus 11 ~~~c~~~~l~-~i-p~~l~--~~l~~L~ls-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~ 80 (276)
T 2z62_A 11 TYQCMELNFY-KI-PDNLP--FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-----HLST 80 (276)
T ss_dssp EEECTTSCCS-SC-CSSSC--TTCCEEECT-TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-----TCCE
T ss_pred eEEecCCCcc-cc-CCCCC--CCccEEECC-CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-----CCCE
Confidence 3455555555 45 44332 568888888 6667766666788888888888888888877777777777 8888
Q ss_pred EEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEcccccccc-ccChhhhhCCCCCCEEEeecc
Q 048402 86 LDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG-TLSEIHFSNLTKLSWFRVGGN 164 (677)
Q Consensus 86 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~l~~~~~~~l~~L~~L~l~~n 164 (677)
|++++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|. .+.++++|+.|++++|
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSN 159 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSS
T ss_pred EECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCC
Confidence 8888888887777788888888888888888886666678888888888888888863 2455 6888888888888888
Q ss_pred ccceecCCCCCCCcCcc----EEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCc
Q 048402 165 KLTLEVRHDWIPPFQLV----ALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFH 240 (677)
Q Consensus 165 ~l~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~ 240 (677)
.+++.....+..+.+++ .|++++|.+.+..+..+.. .+|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBC
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCH-hHhcccccccEEEccCCccc
Confidence 88877766676666666 7888888887665555443 478888888888887644 34456788888888888887
Q ss_pred cccCC
Q 048402 241 GQITD 245 (677)
Q Consensus 241 ~~~~~ 245 (677)
+..+.
T Consensus 238 c~c~~ 242 (276)
T 2z62_A 238 CSCPR 242 (276)
T ss_dssp CCTTT
T ss_pred ccCCc
Confidence 66543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.1e-22 Score=198.35 Aligned_cols=183 Identities=22% Similarity=0.236 Sum_probs=92.6
Q ss_pred CCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCC
Q 048402 53 NLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLR 132 (677)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 132 (677)
++++|++++|.+++..+..+..++ +|++|++++|.++...+..|.++++|++|++++|.++...+..|..+++|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLT-----KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCT-----TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCC-----CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 445555555554444444444444 455555555555443333444455555555555555444444444555555
Q ss_pred EEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCC
Q 048402 133 VLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNS 212 (677)
Q Consensus 133 ~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 212 (677)
+|++++|.++ .++...|.++++|+.|++++|.++......|..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 113 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 113 ELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence 5555555554 233324445555555555555554444444445555555555555555554555556666666666666
Q ss_pred CCCCccchHHHhccCCccEEECCCccCccc
Q 048402 213 GMSDLFPIRFLKSAFQLKFLDLGLNQFHGQ 242 (677)
Q Consensus 213 ~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 242 (677)
.+++..+.. +..+++|+.|++++|.+...
T Consensus 192 ~l~~~~~~~-~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 192 QLKRVPEGA-FDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCSCCCTTT-TTTCTTCCEEECCSSCBCCS
T ss_pred cCCcCCHHH-hccccCCCEEEecCCCeeCC
Confidence 665543322 23455666666666665543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.9e-23 Score=204.61 Aligned_cols=221 Identities=21% Similarity=0.238 Sum_probs=148.5
Q ss_pred cCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCC
Q 048402 301 LIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGE 380 (677)
Q Consensus 301 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 380 (677)
+..+.+..+.+.... ....+++|+.|++++|.++. . ..+..+++|+.|++++|.+++. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 334455555444322 24456667777777766652 2 2366667777777777776642 3566677777777777
Q ss_pred CcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccC
Q 048402 381 NEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYL 460 (677)
Q Consensus 381 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~ 460 (677)
|.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++
T Consensus 95 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---------------- 157 (272)
T 3rfs_A 95 NQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT---------------- 157 (272)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------------
T ss_pred CccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc----------------
Confidence 7776 34433333567777777777777766666677777777777777777654444444433
Q ss_pred CCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCC
Q 048402 461 PLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSL 540 (677)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 540 (677)
+|+.|++++|++++..+..+..+++|++|++++|++++..|..+..+++|
T Consensus 158 ------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 158 ------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp ------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 34777777777776666677888888888888888887777777888888
Q ss_pred cEEECCCCcccccCccccccCCCCCEEEcccCcccccCCCC
Q 048402 541 ESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPSS 581 (677)
Q Consensus 541 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 581 (677)
+.|++++|.+.+. ++.|+.+++++|.++|.+|..
T Consensus 208 ~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 208 QYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 8888888877643 346778888888888888763
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=5.7e-23 Score=202.54 Aligned_cols=208 Identities=20% Similarity=0.239 Sum_probs=163.4
Q ss_pred CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD 377 (677)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 377 (677)
+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 5677788888777763 2 2467788888888888888752 4677888888888888888877777778888888888
Q ss_pred cCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccC
Q 048402 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQ 457 (677)
Q Consensus 378 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~ 457 (677)
+++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..++
T Consensus 116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------- 181 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT------------- 181 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------
T ss_pred CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc-------------
Confidence 8888887 44444444688888888888888877777778888999999999988765555444444
Q ss_pred ccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccC
Q 048402 458 QYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM 537 (677)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 537 (677)
+|+.|++++|++++..+..+..+++|+.|++++|.+.+. +
T Consensus 182 ---------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~ 221 (272)
T 3rfs_A 182 ---------------------------------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------C 221 (272)
T ss_dssp ---------------------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------T
T ss_pred ---------------------------------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------C
Confidence 448899999999988888889999999999999988744 4
Q ss_pred CCCcEEECCCCcccccCccccccCCC
Q 048402 538 RSLESIDFSVNQLSGEIPQSMSNLMS 563 (677)
Q Consensus 538 ~~L~~L~Ls~N~l~~~~p~~l~~l~~ 563 (677)
++|+.|+++.|.++|.+|..++.++.
T Consensus 222 ~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 222 PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cHHHHHHHHHHhCCCcccCcccccCC
Confidence 57899999999999999998876653
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.2e-22 Score=198.62 Aligned_cols=202 Identities=21% Similarity=0.179 Sum_probs=157.1
Q ss_pred CCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEE
Q 048402 297 EPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESL 376 (677)
Q Consensus 297 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 376 (677)
.++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+++..+ ...+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 3567777777777776 4444432 577888888888877777778888888888888888875543 2677888888
Q ss_pred ecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCccc
Q 048402 377 DVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSS 456 (677)
Q Consensus 377 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~ 456 (677)
++++|.+. .+|..+. .+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+
T Consensus 83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------------- 147 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT------------- 147 (290)
T ss_dssp ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-------------
T ss_pred ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc-------------
Confidence 88888886 6666543 67888888888888887777788888899999999998875555444443
Q ss_pred CccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccccc
Q 048402 457 QQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGA 536 (677)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 536 (677)
++|+.|++++|++++..+..|..+++|+.|++++|+++ .+|..+..
T Consensus 148 ---------------------------------~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~ 193 (290)
T 1p9a_G 148 ---------------------------------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193 (290)
T ss_dssp ---------------------------------TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred ---------------------------------cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence 44588999999998777777889999999999999999 78888888
Q ss_pred CCCCcEEECCCCcccc
Q 048402 537 MRSLESIDFSVNQLSG 552 (677)
Q Consensus 537 l~~L~~L~Ls~N~l~~ 552 (677)
+.+|+.|++++|.+..
T Consensus 194 ~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TCCCSEEECCSCCBCC
T ss_pred cccCCeEEeCCCCccC
Confidence 8899999999999863
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.9e-22 Score=196.30 Aligned_cols=212 Identities=17% Similarity=0.197 Sum_probs=134.5
Q ss_pred CCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEc
Q 048402 324 NLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLIL 403 (677)
Q Consensus 324 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 403 (677)
..++++++++.++ .+|..+. +.++.|++++|++++..+..|.++++|++|++++|.+.
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 72 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------- 72 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence 4556666666666 3444443 45666666666666555555666666666666665554
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCch
Q 048402 404 RSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAI 483 (677)
Q Consensus 404 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (677)
+..+..+..+++|++|++++|++++..+..+..+
T Consensus 73 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---------------------------------------- 106 (251)
T 3m19_A 73 ------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL---------------------------------------- 106 (251)
T ss_dssp ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC----------------------------------------
T ss_pred ------ccCHhHhccCCcCCEEECCCCcccccChhHhccc----------------------------------------
Confidence 3334444555555555555555543333333332
Q ss_pred hhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCC
Q 048402 484 EYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMS 563 (677)
Q Consensus 484 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 563 (677)
++|++|++++|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|++++|++++..+..|..+++
T Consensus 107 ------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 107 ------TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp ------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred ------CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence 23366666666666566666788899999999999999766668999999999999999999777778999999
Q ss_pred CCEEEcccCcccccCCCCCCCC------CcCcccccCCCCCCCCCCCCCCCC
Q 048402 564 LNHLNLSNNKLTGKIPSSTQLQ------SFDASSFTGNDLCGAPLPKNCAEN 609 (677)
Q Consensus 564 L~~L~ls~N~l~~~~p~~~~~~------~l~~~~~~~n~l~~~~~~~~c~~~ 609 (677)
|++|++++|++.|.......+. .....+..++.+++.|....|...
T Consensus 181 L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 181 LQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp CCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred CCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 9999999999988743321110 111223456677877877788655
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.1e-24 Score=226.94 Aligned_cols=236 Identities=16% Similarity=0.228 Sum_probs=153.6
Q ss_pred CCCcCeEecCCCCCcccCC----cccccCCCCceecccCcc---ccccCCcCc-------CCCCCccEEECcCCcccc--
Q 048402 298 PKSLIGLKLKDNSLQGEIP----DCWMSYQNLEILELSNNK---FTGKLPNSL-------GSLTSLIWLLLGKNRLSG-- 361 (677)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~l~~n~~~~-- 361 (677)
+++|++|++++|.++...+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4555555555555554322 224455556666665542 223333332 566677777777777665
Q ss_pred --cCCccCcCCCCCCEEecCCCcccccCChhhhh---cc---------CCceEEEcCCCccc-ccCC---ccccCCCCCC
Q 048402 362 --TIPVSLKNCTALESLDVGENEFVGNIPTWTGE---RF---------SRMVVLILRSNNFH-GPLP---TRLCDLAFLQ 423 (677)
Q Consensus 362 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l~~L~ 423 (677)
.++..+..+++|++|++++|.+.+..+..+.. .+ ++|++|++++|+++ +.++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 34556666777777777777765333322221 12 67777888777776 3333 3556677888
Q ss_pred EEeCCCCcCCC-----CcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcc
Q 048402 424 ILDLADNNLFG-----TIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVS 498 (677)
Q Consensus 424 ~L~Ls~n~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 498 (677)
+|++++|++.. ..|.. +..+++|+.|+|+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~----------------------------------------------l~~~~~L~~L~Ls 224 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEG----------------------------------------------LAYCQELKVLDLQ 224 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTT----------------------------------------------GGGCTTCCEEECC
T ss_pred EEECcCCCCCHhHHHHHHHHH----------------------------------------------hhcCCCccEEECc
Confidence 88888887641 11112 2234556888888
Q ss_pred cCccc----ccCCcccCCCCCCcEEeccCCcceee----cccccc--cCCCCcEEECCCCcccc----cCcccc-ccCCC
Q 048402 499 RNNLT----KSIPLEMTNLKATQSLNFSHNSFTGR----IPESIG--AMRSLESIDFSVNQLSG----EIPQSM-SNLMS 563 (677)
Q Consensus 499 ~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~ 563 (677)
+|.++ ..+|..+..+++|++|+|++|.+++. +|..+. .+++|++|+|++|.+++ .+|..+ .++++
T Consensus 225 ~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 225 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 88885 56777888888999999999998765 456663 38899999999999987 477777 56899
Q ss_pred CCEEEcccCcccccCC
Q 048402 564 LNHLNLSNNKLTGKIP 579 (677)
Q Consensus 564 L~~L~ls~N~l~~~~p 579 (677)
|++|++++|++.+..|
T Consensus 305 L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 305 LLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTSBSCTTSH
T ss_pred ceEEEccCCcCCcchh
Confidence 9999999999887654
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=6.1e-24 Score=218.89 Aligned_cols=130 Identities=24% Similarity=0.250 Sum_probs=64.6
Q ss_pred EEcccCCCCCCCCCC---CCCccEEEccCCcccccCChhHhhccCCCC-CcCeEecCCCCCcccCCcccccC-----CCC
Q 048402 255 LSVHSNNMSGPLPLI---SSNLVYLDLSNNSFSGSVSHYLCYRINEPK-SLIGLKLKDNSLQGEIPDCWMSY-----QNL 325 (677)
Q Consensus 255 L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L 325 (677)
++++.|.+++.+|.. .++|++|++++|.+++..+..+...+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 345555555544432 233666666666655554444444444455 56666666665555444444443 555
Q ss_pred ceecccCccccccCCcCc----CCC-CCccEEECcCCcccccCCccC----cC-CCCCCEEecCCCccc
Q 048402 326 EILELSNNKFTGKLPNSL----GSL-TSLIWLLLGKNRLSGTIPVSL----KN-CTALESLDVGENEFV 384 (677)
Q Consensus 326 ~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~l~ 384 (677)
++|++++|.+++..+..+ ..+ ++|+.|++++|++++..+..+ .. .++|++|++++|.+.
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 555555555554433322 222 455555555555554333222 12 235555555555554
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.6e-23 Score=205.89 Aligned_cols=234 Identities=19% Similarity=0.173 Sum_probs=143.1
Q ss_pred CccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCccc--ccCCCCceecccCccccccCC----cCcCC
Q 048402 272 NLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCW--MSYQNLEILELSNNKFTGKLP----NSLGS 345 (677)
Q Consensus 272 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~ 345 (677)
.++.+.+.++.++......+... ...++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34556666655542211111111 113557888888888777777776 777888888888888775444 23446
Q ss_pred CCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEE
Q 048402 346 LTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQIL 425 (677)
Q Consensus 346 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 425 (677)
+++|++|++++|++++..+..|..+++|++|++++|++.+.... ..+..+..+++|++|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNL 202 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEE
Confidence 77777777777777766666777777777777777765431000 001122345556666
Q ss_pred eCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCccccc
Q 048402 426 DLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKS 505 (677)
Q Consensus 426 ~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 505 (677)
++++|+++ .+|... ...+..+++|++||+++|++++.
T Consensus 203 ~Ls~N~l~-~l~~~~------------------------------------------~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 203 ALRNTGME-TPTGVC------------------------------------------AALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp BCCSSCCC-CHHHHH------------------------------------------HHHHHHTCCCSSEECTTSCCCCC
T ss_pred ECCCCCCC-chHHHH------------------------------------------HHHHhcCCCCCEEECCCCCCCcc
Confidence 66666553 111100 00112234456666666666666
Q ss_pred CCcccCCC---CCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCccc
Q 048402 506 IPLEMTNL---KATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLT 575 (677)
Q Consensus 506 ~~~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 575 (677)
.|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 56555555 57888888888887 5666654 6888888888888743 43 667788888888888875
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.7e-22 Score=193.75 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=26.7
Q ss_pred CCCcEEeccCCc-ceeecccccccC-CCCcEEECCCCcccccCccccccCCCCCEEEcccC
Q 048402 514 KATQSLNFSHNS-FTGRIPESIGAM-RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNN 572 (677)
Q Consensus 514 ~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 572 (677)
++|++|++++|+ +++..+..|.++ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 445555555553 543334445555 555555555555542 2222 3444555555443
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.4e-23 Score=209.46 Aligned_cols=252 Identities=18% Similarity=0.191 Sum_probs=183.1
Q ss_pred ccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCcccccc-CCcCcCCCCCccE
Q 048402 273 LVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGK-LPNSLGSLTSLIW 351 (677)
Q Consensus 273 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 351 (677)
++.++++++.+.. ..+.... .+.++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++
T Consensus 49 ~~~l~l~~~~~~~---~~~~~~~--~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLHP---DVTGRLL--SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCCH---HHHHHHH--HTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccCCH---HHHHhhh--hccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 5667777776652 2222200 16788888888888866555 45788999999999888755 6777888899999
Q ss_pred EECcCCcccccCCccCcCCCCCCEEecCCC-ccccc-CChhhhhccCCceEEEcCCC-ccccc-CCccccCCC-CCCEEe
Q 048402 352 LLLGKNRLSGTIPVSLKNCTALESLDVGEN-EFVGN-IPTWTGERFSRMVVLILRSN-NFHGP-LPTRLCDLA-FLQILD 426 (677)
Q Consensus 352 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~ 426 (677)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+ ..+++|++|++++| .+++. ++..+..++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 999999888777778888899999999998 56643 44333 36889999999998 88753 566677888 999999
Q ss_pred CCCCc--CC-CCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCc-c
Q 048402 427 LADNN--LF-GTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNN-L 502 (677)
Q Consensus 427 Ls~n~--l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l 502 (677)
+++|. ++ +.+|. ....+++|++|++++|. +
T Consensus 202 l~~~~~~~~~~~l~~----------------------------------------------~~~~~~~L~~L~l~~~~~l 235 (336)
T 2ast_B 202 LSGYRKNLQKSDLST----------------------------------------------LVRRCPNLVHLDLSDSVML 235 (336)
T ss_dssp CCSCGGGSCHHHHHH----------------------------------------------HHHHCTTCSEEECTTCTTC
T ss_pred eCCCcccCCHHHHHH----------------------------------------------HHhhCCCCCEEeCCCCCcC
Confidence 99984 33 12222 23446667999999998 7
Q ss_pred cccCCcccCCCCCCcEEeccCCc-ceeecccccccCCCCcEEECCCCcccccCccccccC-CCCCEEEcccCcccccCCC
Q 048402 503 TKSIPLEMTNLKATQSLNFSHNS-FTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNL-MSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 503 ~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~ 580 (677)
++..+..+..+++|++|++++|. +.......+.++++|++|++++| ++. +.+..+ ..++.|++++|++++..|.
T Consensus 236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 236 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCC
Confidence 76777788889999999999995 32222235788999999999998 432 234444 3466777899999888776
Q ss_pred C
Q 048402 581 S 581 (677)
Q Consensus 581 ~ 581 (677)
.
T Consensus 312 ~ 312 (336)
T 2ast_B 312 T 312 (336)
T ss_dssp S
T ss_pred c
Confidence 4
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=3.8e-22 Score=200.83 Aligned_cols=203 Identities=21% Similarity=0.267 Sum_probs=156.8
Q ss_pred CCCccEEECcCCcccccCCccC--cCCCCCCEEecCCCcccccCCh---hhhhccCCceEEEcCCCcccccCCccccCCC
Q 048402 346 LTSLIWLLLGKNRLSGTIPVSL--KNCTALESLDVGENEFVGNIPT---WTGERFSRMVVLILRSNNFHGPLPTRLCDLA 420 (677)
Q Consensus 346 l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 420 (677)
+++|++|++++|++++..|..+ ..+++|++|++++|.+.+..+. .....+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3457777777777776666666 6777777777777777654441 1112588999999999999888888999999
Q ss_pred CCCEEeCCCCcCCCC--cC--ccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEE
Q 048402 421 FLQILDLADNNLFGT--IP--KCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETD 496 (677)
Q Consensus 421 ~L~~L~Ls~n~l~~~--~p--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 496 (677)
+|++|++++|++.+. ++ ..+.. +++|++|+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~----------------------------------------------l~~L~~L~ 203 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHK----------------------------------------------FPAIQNLA 203 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTS----------------------------------------------SCCCCSCB
T ss_pred CCCEEECCCCCCccchhhhHHHhhhc----------------------------------------------CCCCCEEE
Confidence 999999999997642 21 11122 45569999
Q ss_pred cccCcccccCCc----ccCCCCCCcEEeccCCcceeecccccccC---CCCcEEECCCCcccccCccccccCCCCCEEEc
Q 048402 497 VSRNNLTKSIPL----EMTNLKATQSLNFSHNSFTGRIPESIGAM---RSLESIDFSVNQLSGEIPQSMSNLMSLNHLNL 569 (677)
Q Consensus 497 Ls~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 569 (677)
+++|+++. ++. .+..+++|++|+|++|++++..|+.+..+ ++|++|++++|+++ .+|..+. ++|++||+
T Consensus 204 Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 204 LRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred CCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 99999973 232 35788999999999999998878888777 69999999999999 7787775 89999999
Q ss_pred ccCcccccCCCCCCCCCcCcccccCCCCCC
Q 048402 570 SNNKLTGKIPSSTQLQSFDASSFTGNDLCG 599 (677)
Q Consensus 570 s~N~l~~~~p~~~~~~~l~~~~~~~n~l~~ 599 (677)
++|++++. |....+..++.+++++|.+..
T Consensus 280 s~N~l~~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNRA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence 99999974 445577888888888886653
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2e-21 Score=187.63 Aligned_cols=197 Identities=17% Similarity=0.121 Sum_probs=169.3
Q ss_pred CCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCc-CCcccchhhhhccccCcCCccEEEccc-CcCccccccccCCC
Q 048402 27 TSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH-LSQEISEILNIFSGCVSIELESLDLRS-SSISGHLTDQLGQF 104 (677)
Q Consensus 27 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l 104 (677)
++|++|+++ ++.+++..+.+|.++++|++|++++|. +++..+..|..++ +|++|++++ |.+++..+..|.++
T Consensus 31 ~~l~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-----~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLI-ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-----KVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TTCCEEEEE-SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-----TCCEEEEEEETTCCEECTTSEECC
T ss_pred CcccEEEEe-CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-----CCcEEECCCCCCeeEcCHHHhCCC
Confidence 489999999 777887777789999999999999997 8877777888888 899999998 99998777889999
Q ss_pred CCCCEEECcCCccccCCCcCCCCCCCCC---EEEcccc-ccccccChhhhhCCCCCC-EEEeeccccceecCCCCCCCcC
Q 048402 105 KNLDNLDLANNSIVGPIPQSLGHLSNLR---VLQIYNN-KLNGTLSEIHFSNLTKLS-WFRVGGNKLTLEVRHDWIPPFQ 179 (677)
Q Consensus 105 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~i~~~l~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~ 179 (677)
++|++|++++|.+++ +|. +..+++|+ +|++++| .++ .++...|.++++|+ .|++++|.++......|.. .+
T Consensus 105 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~ 180 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK 180 (239)
T ss_dssp TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE
T ss_pred CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CC
Confidence 999999999999985 665 88888888 9999999 887 67766799999999 9999999998766666666 79
Q ss_pred ccEEEeeccc-CCCCCChhccCC-CCCCEEEccCCCCCCccchHHHhccCCccEEECCCc
Q 048402 180 LVALGFHNCY-VGSRFPQWLHSQ-KHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLN 237 (677)
Q Consensus 180 L~~L~l~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n 237 (677)
|+.|++++|. +....+..|..+ ++|++|++++|++++..+. .+++|+.|+++++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence 9999999995 887778889999 9999999999999887553 4678999998875
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4e-21 Score=192.74 Aligned_cols=194 Identities=22% Similarity=0.318 Sum_probs=133.5
Q ss_pred ccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCce
Q 048402 320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV 399 (677)
Q Consensus 320 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 399 (677)
..+++|++|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+. .++. + ..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~-~-~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA-I-AGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG-G-TTCTTCC
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh-h-cCCCCCC
Confidence 455666666666666653 33 45666666666666666664333 666667777777776665 3332 2 2567777
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeec
Q 048402 400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSE 479 (677)
Q Consensus 400 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (677)
+|++++|.+++. + .+..+++|++|++++|++.+..+ +.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~-------------------------------------- 148 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LA-------------------------------------- 148 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GG--------------------------------------
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--cc--------------------------------------
Confidence 777777777643 2 26777788888888887753322 22
Q ss_pred CCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccc
Q 048402 480 GEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMS 559 (677)
Q Consensus 480 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 559 (677)
.+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++.. .+.
T Consensus 149 --------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~ 214 (308)
T 1h6u_A 149 --------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLA 214 (308)
T ss_dssp --------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGT
T ss_pred --------CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--ccc
Confidence 24455788888888875443 7888899999999999885433 788899999999999998554 378
Q ss_pred cCCCCCEEEcccCcccc
Q 048402 560 NLMSLNHLNLSNNKLTG 576 (677)
Q Consensus 560 ~l~~L~~L~ls~N~l~~ 576 (677)
.+++|+.|++++|++++
T Consensus 215 ~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEccCCeeec
Confidence 88999999999999875
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.5e-22 Score=210.64 Aligned_cols=242 Identities=21% Similarity=0.216 Sum_probs=168.1
Q ss_pred CccccCCCCCCEEecCCCCCCCcc----CchhhcCCCCCCEEEccCCc---CCcccchhh-------hhccccCcCCccE
Q 048402 20 SEALGNLTSISRLDLSLNTGPEGR----IPRSMASLCNLKSINLRGVH---LSQEISEIL-------NIFSGCVSIELES 85 (677)
Q Consensus 20 ~~~~~~l~~L~~L~Ls~~~~~~~~----~~~~l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~~~~~~L~~ 85 (677)
...+..+++|++|+|+ ++.+... ++..+..+++|++|++++|. +++.+|..+ ..++ +|++
T Consensus 25 ~~~l~~~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~-----~L~~ 98 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLS-GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP-----KLHT 98 (386)
T ss_dssp SHHHHHCSCCCEEECT-TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT-----TCCE
T ss_pred HHHHhcCCCccEEECC-CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC-----cccE
Confidence 4556677888888888 6666544 33346678888888888753 444455544 3455 7888
Q ss_pred EEcccCcCcc----ccccccCCCCCCCEEECcCCccccCCCcCC----CCC---------CCCCEEEccccccc-cccCh
Q 048402 86 LDLRSSSISG----HLTDQLGQFKNLDNLDLANNSIVGPIPQSL----GHL---------SNLRVLQIYNNKLN-GTLSE 147 (677)
Q Consensus 86 L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L~L~~n~i~-~~l~~ 147 (677)
|++++|.++. .++..+..+++|++|++++|.++...+..+ ..+ ++|++|++++|.++ +.++.
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 8888888876 366677788888888888888764333333 333 78888888888876 33332
Q ss_pred --hhhhCCCCCCEEEeeccccce-----ecCCCCCCCcCccEEEeecccCC----CCCChhccCCCCCCEEEccCCCCCC
Q 048402 148 --IHFSNLTKLSWFRVGGNKLTL-----EVRHDWIPPFQLVALGFHNCYVG----SRFPQWLHSQKHLQYLNLLNSGMSD 216 (677)
Q Consensus 148 --~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~n~i~~ 216 (677)
..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.++ ..+|..+..+++|++|++++|.+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 256678888888888887763 23346677788888888888875 5567778888888889998888877
Q ss_pred ccchHHHh-----ccCCccEEECCCccCcc-----ccCCc-cccccccEEEcccCCCCCCCC
Q 048402 217 LFPIRFLK-----SAFQLKFLDLGLNQFHG-----QITDL-TKVTQLLFLSVHSNNMSGPLP 267 (677)
Q Consensus 217 ~~~~~~~~-----~~~~L~~L~Ls~n~l~~-----~~~~~-~~~~~L~~L~l~~n~~~~~~~ 267 (677)
.....+.. .+++|++|++++|.+++ .+..+ ..+++|+.|++++|.+++..+
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 53332222 26788889998888887 33333 235888899999888886653
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.8e-22 Score=207.89 Aligned_cols=265 Identities=17% Similarity=0.172 Sum_probs=167.2
Q ss_pred EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCc----hhhcCCC-CCCEEEccCCcCCcccchhhhhc-----
Q 048402 6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIP----RSMASLC-NLKSINLRGVHLSQEISEILNIF----- 75 (677)
Q Consensus 6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l----- 75 (677)
+++++.|.++|.+ +..+...++|++|+|+ ++.+.+..+ .++..++ +|++|++++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~-~~~~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPV-EEFTSIPHGVTSLDLS-LNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHH-HHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHH-HHHHhCCCCceEEEcc-CCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 5789999999777 6666667779999999 777776666 7788898 89999999999998878777765
Q ss_pred cccCcCCccEEEcccCcCcccccccc----CCC-CCCCEEECcCCccccCCCcCC----CC-CCCCCEEEccccccccc-
Q 048402 76 SGCVSIELESLDLRSSSISGHLTDQL----GQF-KNLDNLDLANNSIVGPIPQSL----GH-LSNLRVLQIYNNKLNGT- 144 (677)
Q Consensus 76 ~~~~~~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~i~~~- 144 (677)
+ +|++|++++|.+++..+..+ ..+ ++|++|++++|.++...+..+ .. .++|++|++++|.+++.
T Consensus 80 ~-----~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 80 A-----NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp T-----TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred C-----CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 5 89999999999987666544 444 899999999999986655443 34 36899999999988732
Q ss_pred ---cChhhhhCCC-CCCEEEeeccccceecCCCC----CCC-cCccEEEeecccCCCC----CChhccC-CCCCCEEEcc
Q 048402 145 ---LSEIHFSNLT-KLSWFRVGGNKLTLEVRHDW----IPP-FQLVALGFHNCYVGSR----FPQWLHS-QKHLQYLNLL 210 (677)
Q Consensus 145 ---l~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~----~~~-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~l~ 210 (677)
++. .+...+ +|++|++++|.++......+ ... .+|+.|++++|.++.. ++..+.. .++|++|+++
T Consensus 155 ~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 155 SDELIQ-ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHHHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HHHHHH-HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 222 345555 88888888888775443322 222 3555555555555442 2222332 2355555555
Q ss_pred CCCCCCccchHH---HhccCCccEEECCCccCccccCCccccccccEEEcccCCCCCCCCCCCCCccEEEccCCcccccC
Q 048402 211 NSGMSDLFPIRF---LKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSV 287 (677)
Q Consensus 211 ~n~i~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~ 287 (677)
+|.+++..+..+ +..+++|++|++++|.+....+..... +. .....+++|+.|++++|.+.+..
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~------------l~-~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA------------LG-AAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHH------------HH-TTSTTCCEEEEECTTSCBCCGGG
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHH------------HH-HHhccCCceEEEecCCCcCCCcc
Confidence 555554433222 122344555555554422211100000 00 00112456777778888776654
Q ss_pred ChhH
Q 048402 288 SHYL 291 (677)
Q Consensus 288 ~~~~ 291 (677)
+..+
T Consensus 301 ~~~~ 304 (362)
T 3goz_A 301 SIPI 304 (362)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 4433
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.2e-22 Score=207.33 Aligned_cols=234 Identities=16% Similarity=0.229 Sum_probs=150.6
Q ss_pred CCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCccc-CCcccccCCCCceecccCccccccCCcCcCCCCCc
Q 048402 271 SNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGE-IPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSL 349 (677)
Q Consensus 271 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 349 (677)
++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 3455555555555544433 22356677777777766544 55566677777777777777766666667777777
Q ss_pred cEEECcCC-ccccc-CCccCcCCCCCCEEecCCC-ccccc-CChhhhhccC-CceEEEcCCC--ccc-ccCCccccCCCC
Q 048402 350 IWLLLGKN-RLSGT-IPVSLKNCTALESLDVGEN-EFVGN-IPTWTGERFS-RMVVLILRSN--NFH-GPLPTRLCDLAF 421 (677)
Q Consensus 350 ~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~ 421 (677)
++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+. .++ +|++|++++| .++ +.++..+..+++
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence 77777777 55542 4455667777777777777 66543 333333 577 7888888777 444 345566667788
Q ss_pred CCEEeCCCCc-CCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccC
Q 048402 422 LQILDLADNN-LFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRN 500 (677)
Q Consensus 422 L~~L~Ls~n~-l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 500 (677)
|+.|++++|. +++..+..+.. +++|++|++++|
T Consensus 224 L~~L~l~~~~~l~~~~~~~l~~----------------------------------------------l~~L~~L~l~~~ 257 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQEFFQ----------------------------------------------LNYLQHLSLSRC 257 (336)
T ss_dssp CSEEECTTCTTCCGGGGGGGGG----------------------------------------------CTTCCEEECTTC
T ss_pred CCEEeCCCCCcCCHHHHHHHhC----------------------------------------------CCCCCEeeCCCC
Confidence 8888888887 55444444433 344578888887
Q ss_pred c-ccccCCcccCCCCCCcEEeccCCcceeecccccccC-CCCcEEECCCCcccccCcccccc
Q 048402 501 N-LTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAM-RSLESIDFSVNQLSGEIPQSMSN 560 (677)
Q Consensus 501 ~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~ 560 (677)
. +.......+.++++|++|++++| +.. +.+..+ .+++.|++++|++++..|..++.
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 4 32222235778899999999998 332 234444 34777778999999888877664
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.9e-20 Score=180.78 Aligned_cols=159 Identities=20% Similarity=0.215 Sum_probs=85.4
Q ss_pred CCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCC
Q 048402 53 NLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLR 132 (677)
Q Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 132 (677)
++++|++++|.+++..+..+..++ +|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLT-----KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCT-----TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEccCCCcCccCHhHhcCcc-----cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 444444444444444444444444 455555555555444444445555555555555555444444444555555
Q ss_pred EEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCCCCEEEccCC
Q 048402 133 VLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNS 212 (677)
Q Consensus 133 ~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 212 (677)
+|++++|.++ .++...|.++++|+.|++++|.++...+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 111 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 111 KLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 5555555554 333334445555555555555555444444555555555555555555556666777888888888888
Q ss_pred CCCCc
Q 048402 213 GMSDL 217 (677)
Q Consensus 213 ~i~~~ 217 (677)
.++..
T Consensus 190 ~~~c~ 194 (251)
T 3m19_A 190 QFDCS 194 (251)
T ss_dssp CBCTT
T ss_pred ceeCC
Confidence 87665
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.4e-20 Score=187.03 Aligned_cols=197 Identities=23% Similarity=0.335 Sum_probs=156.1
Q ss_pred ccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccC
Q 048402 23 LGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLG 102 (677)
Q Consensus 23 ~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~ 102 (677)
+..+++|++|+++ ++.+.. ++ .+..+++|++|++++|.+++..+ +..++ +|++|++++|.+++. + .+.
T Consensus 37 ~~~l~~L~~L~l~-~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~-----~L~~L~L~~n~l~~~-~-~~~ 104 (308)
T 1h6u_A 37 QADLDGITTLSAF-GTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLT-----KITELELSGNPLKNV-S-AIA 104 (308)
T ss_dssp HHHHHTCCEEECT-TSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCC-----SCCEEECCSCCCSCC-G-GGT
T ss_pred HHHcCCcCEEEee-CCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCC-----CCCEEEccCCcCCCc-h-hhc
Confidence 4567888888888 555553 34 57888888888888888886555 77777 888888888888853 3 588
Q ss_pred CCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccE
Q 048402 103 QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182 (677)
Q Consensus 103 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 182 (677)
.+++|++|++++|.+++. + .+..+++|++|++++|.++ .++. +.++++|+.|++++|.+++... +..+++|+.
T Consensus 105 ~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177 (308)
T ss_dssp TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCE
Confidence 888888999888888753 3 3888888899999888887 4443 7788888999998888876554 778888899
Q ss_pred EEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCcccc
Q 048402 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQI 243 (677)
Q Consensus 183 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 243 (677)
|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEECCC
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeecCC
Confidence 9999888876544 7889999999999999988754 466889999999999987643
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=8.1e-20 Score=186.99 Aligned_cols=222 Identities=18% Similarity=0.182 Sum_probs=137.2
Q ss_pred CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCC-cCcCCCCCccE-EECcCCcccccCCccCcCCCCCCEE
Q 048402 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLP-NSLGSLTSLIW-LLLGKNRLSGTIPVSLKNCTALESL 376 (677)
Q Consensus 299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~l~~n~~~~~~~~~~~~l~~L~~L 376 (677)
+++++|++++|+++...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+++|+++.+.|..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 456777777777765555567777777777777777654443 45667766554 4555677776667777777777777
Q ss_pred ecCCCcccccCChhhhhccCCceEEEcCC-CcccccCCccccCCC-CCCEEeCCCCcCCCCcCccccccccCccccccCc
Q 048402 377 DVGENEFVGNIPTWTGERFSRMVVLILRS-NNFHGPLPTRLCDLA-FLQILDLADNNLFGTIPKCINNITGMVAANSFTR 454 (677)
Q Consensus 377 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~ 454 (677)
++++|++. .+|...+....++..+++.+ +.+....+..|..+. .++.|++++|+++. +|......
T Consensus 110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~----------- 176 (350)
T 4ay9_X 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNG----------- 176 (350)
T ss_dssp EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTT-----------
T ss_pred cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccc-----------
Confidence 77777776 44443333455666777755 455544445555554 56777777777763 33322221
Q ss_pred ccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEccc-CcccccCCcccCCCCCCcEEeccCCcceeecccc
Q 048402 455 SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSR-NNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES 533 (677)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 533 (677)
.+++.+++++ |.++...+..|.++++|++|++++|+++...+..
T Consensus 177 -----------------------------------~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~ 221 (350)
T 4ay9_X 177 -----------------------------------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221 (350)
T ss_dssp -----------------------------------EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred -----------------------------------cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh
Confidence 2346777764 5555444456777888888888888877333333
Q ss_pred cccCCCCcEEECCCCcccccCccccccCCCCCEEEcccC
Q 048402 534 IGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNN 572 (677)
Q Consensus 534 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 572 (677)
| .+|+.|.+.++.-...+|. +..+++|+.++++++
T Consensus 222 ~---~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 L---ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp C---TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred h---ccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 3 4455555544443336663 677778888887654
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=7.8e-19 Score=179.64 Aligned_cols=224 Identities=17% Similarity=0.087 Sum_probs=104.3
Q ss_pred CCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCE-EEeeccccceecCCCCCCCcCccEEE
Q 048402 106 NLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSW-FRVGGNKLTLEVRHDWIPPFQLVALG 184 (677)
Q Consensus 106 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~~~L~~L~ 184 (677)
++++|+|++|.|+.+.+.+|.++++|++|+|++|.+.+.++...|.++++++. +.++.|.++...+..|..+++|+.|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34444444444443333344444444444444444433344334444444333 22333444444444444444444444
Q ss_pred eecccCCCCCChhccCCCCCCEEEccC-CCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCCC
Q 048402 185 FHNCYVGSRFPQWLHSQKHLQYLNLLN-SGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNMS 263 (677)
Q Consensus 185 l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~~ 263 (677)
+++|.+....+..+....++..+++.+ +.+..+.+..+......++.|++++|+++...+..+...+++.+++.++.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n-- 188 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN-- 188 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT--
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC--
Confidence 444444444443444444455555543 34444333333332335666666666666555554444455555554322
Q ss_pred CCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCc
Q 048402 264 GPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSL 343 (677)
Q Consensus 264 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 343 (677)
.++...++ .+..+++|++|++++|+++...+..|.++++|+.+++. .++ .+| .+
T Consensus 189 ------------------~l~~i~~~----~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~--~l~-~lP-~l 242 (350)
T 4ay9_X 189 ------------------NLEELPND----VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY--NLK-KLP-TL 242 (350)
T ss_dssp ------------------TCCCCCTT----TTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT--TCC-CCC-CT
T ss_pred ------------------cccCCCHH----HhccCcccchhhcCCCCcCccChhhhccchHhhhccCC--CcC-cCC-Cc
Confidence 12211111 12235666777777777664444444444444433332 233 445 36
Q ss_pred CCCCCccEEECcCC
Q 048402 344 GSLTSLIWLLLGKN 357 (677)
Q Consensus 344 ~~l~~L~~L~l~~n 357 (677)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 67777787777654
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=171.47 Aligned_cols=156 Identities=20% Similarity=0.233 Sum_probs=116.3
Q ss_pred EEecCCCcccccCChhhhhccCCceEEEcCCCcccccCC-ccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccC
Q 048402 375 SLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLP-TRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFT 453 (677)
Q Consensus 375 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 453 (677)
.+++++|.+. .+|..+. +.+++|++++|++++..+ ..|..+++|++|++++|++++..+..|.++++
T Consensus 15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~-------- 82 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-------- 82 (220)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT--------
T ss_pred EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC--------
Confidence 5556665554 4554332 345566666666665433 34666777777777777766544444444333
Q ss_pred cccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc
Q 048402 454 RSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES 533 (677)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 533 (677)
|++|++++|.+++..+..|.++++|++|+|++|++++..|..
T Consensus 83 --------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 83 --------------------------------------VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS 124 (220)
T ss_dssp --------------------------------------CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred --------------------------------------CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH
Confidence 377777777777777777889999999999999999888889
Q ss_pred cccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402 534 IGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 534 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
|.++++|++|+|++|++++..|..|..+++|++|++++|++.|.++.
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999999999999999988899999999999999999999988764
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.6e-19 Score=194.13 Aligned_cols=187 Identities=28% Similarity=0.383 Sum_probs=104.0
Q ss_pred CcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecC
Q 048402 300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG 379 (677)
Q Consensus 300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 379 (677)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56667777666664 44433 256666666666666 344 335666666666666664 444 433 66666666
Q ss_pred CCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCcc
Q 048402 380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQY 459 (677)
Q Consensus 380 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~ 459 (677)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +.
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------ 179 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------ 179 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence 666653 554 35666666666666664 333 34566666666666553 332 21
Q ss_pred CCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCC-------cEEeccCCcceeeccc
Q 048402 460 LPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKAT-------QSLNFSHNSFTGRIPE 532 (677)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-------~~L~Ls~n~l~~~~p~ 532 (677)
++|+.|++++|+++ .+|. +.. +| +.|+|++|+++ .+|.
T Consensus 180 ------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~ 224 (571)
T 3cvr_A 180 ------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE 224 (571)
T ss_dssp ------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred ------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence 12356666666665 3343 333 44 56666666665 4555
Q ss_pred ccccCCCCcEEECCCCcccccCccccccC
Q 048402 533 SIGAMRSLESIDFSVNQLSGEIPQSMSNL 561 (677)
Q Consensus 533 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 561 (677)
.+..+++|+.|+|++|.+++.+|..+..+
T Consensus 225 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 225 NILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 55556666666666666655555555443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.2e-19 Score=168.18 Aligned_cols=181 Identities=16% Similarity=0.192 Sum_probs=145.3
Q ss_pred cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402 5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84 (677)
Q Consensus 5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~ 84 (677)
+.++.+++.++ .+ |..+ .++|++|+++ ++.+.+..+..+..+++|++|++++|.+++..+..+..++ +|+
T Consensus 10 ~~v~c~~~~l~-~~-p~~~--~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~ 79 (208)
T 2o6s_A 10 TTVECYSQGRT-SV-PTGI--PAQTTYLDLE-TNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-----SLT 79 (208)
T ss_dssp TEEECCSSCCS-SC-CSCC--CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-----TCC
T ss_pred CEEEecCCCcc-CC-CCCC--CCCCcEEEcC-CCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-----CcC
Confidence 56788888877 55 3332 5689999998 6777766666788899999999999999877777778888 899
Q ss_pred EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402 85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164 (677)
Q Consensus 85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n 164 (677)
+|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+.++++|+.|++++|
T Consensus 80 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCC
Confidence 9999999998777777889999999999999998776777888999999999999987 566557888899999999988
Q ss_pred ccceecCCCCCCCcCccEEEeecccCCCCCChhccCCCC
Q 048402 165 KLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHSQKH 203 (677)
Q Consensus 165 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 203 (677)
.+.. .++.++.|+++.|.+.+.+|.+++.++.
T Consensus 159 ~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred Ceec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 7653 4557788888888888888877776554
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=2.7e-19 Score=169.75 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=124.3
Q ss_pred CEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccC
Q 048402 374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFT 453 (677)
Q Consensus 374 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 453 (677)
+.++++++.+. .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|++.+..|..|.++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~-------- 81 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-------- 81 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS--------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC--------
Confidence 45666666665 5665432 56777777777777666667777888888888888877666666555444
Q ss_pred cccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc
Q 048402 454 RSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES 533 (677)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 533 (677)
|++|+|++|+++...+..|.++++|++|+|++|++++..|..
T Consensus 82 --------------------------------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 123 (220)
T 2v9t_B 82 --------------------------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA 123 (220)
T ss_dssp --------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred --------------------------------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence 378888888888666677889999999999999999888889
Q ss_pred cccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402 534 IGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP 579 (677)
Q Consensus 534 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 579 (677)
|..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.++
T Consensus 124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9999999999999999998888889999999999999999988765
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.6e-19 Score=167.76 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=35.8
Q ss_pred cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCC
Q 048402 493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMS 563 (677)
Q Consensus 493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 563 (677)
++|++++|++++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|++++.+|+.++.++.
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 444455554444444445556666666666665542 2345666666666666666666655543
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=4.5e-19 Score=190.57 Aligned_cols=114 Identities=29% Similarity=0.401 Sum_probs=52.4
Q ss_pred CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEec
Q 048402 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDV 378 (677)
Q Consensus 299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 378 (677)
++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|++++|++++ +|. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 34555555555544 333 234455555555555543 333 332 45555555555543 222 3445555555
Q ss_pred CCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC
Q 048402 379 GENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF 433 (677)
Q Consensus 379 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 433 (677)
++|.+++ +|. .+++|++|++++|++++ +|. +. ++|+.|++++|+++
T Consensus 148 s~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 148 DNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 5555442 333 23445555555555543 333 32 44555555555444
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.3e-18 Score=166.14 Aligned_cols=157 Identities=20% Similarity=0.214 Sum_probs=129.0
Q ss_pred CCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCcccccc
Q 048402 373 LESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSF 452 (677)
Q Consensus 373 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~ 452 (677)
-+.++++++.+. .+|..+ .++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l--------- 87 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL--------- 87 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC---------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC---------
Confidence 456777777765 666644 3678888888888887777888888888888888888864444444443
Q ss_pred CcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccc
Q 048402 453 TRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPE 532 (677)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 532 (677)
++|+.|++++|++++..+..|..+++|++|+|++|+++ .+|.
T Consensus 88 -------------------------------------~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 129 (229)
T 3e6j_A 88 -------------------------------------TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR 129 (229)
T ss_dssp -------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT
T ss_pred -------------------------------------CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc
Confidence 44588999999998777778899999999999999999 7889
Q ss_pred ccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCCC
Q 048402 533 SIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 533 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
.+..+++|+.|++++|++++..+..|..+++|+.|++++|++.|.++.
T Consensus 130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 999999999999999999977778899999999999999999998863
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=9.9e-19 Score=173.61 Aligned_cols=82 Identities=18% Similarity=0.357 Sum_probs=60.2
Q ss_pred hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402 489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN 568 (677)
Q Consensus 489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 568 (677)
+++|+.|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|.+++ +| .+..+++|+.|+
T Consensus 133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~ 206 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE 206 (291)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 34456677777776644 467778888888888888875444 7788888888888888874 44 377888888888
Q ss_pred cccCcccc
Q 048402 569 LSNNKLTG 576 (677)
Q Consensus 569 ls~N~l~~ 576 (677)
+++|++..
T Consensus 207 l~~n~i~~ 214 (291)
T 1h6t_A 207 LFSQECLN 214 (291)
T ss_dssp EEEEEEEC
T ss_pred CcCCcccC
Confidence 88888765
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=9.8e-19 Score=179.63 Aligned_cols=179 Identities=25% Similarity=0.201 Sum_probs=103.8
Q ss_pred ceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCc-CCCCCCEEecCCCcccccCChhhhhccCCceEEEcC
Q 048402 326 EILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLK-NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILR 404 (677)
Q Consensus 326 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 404 (677)
+.++++++.++ .+|..+. +.++.|++++|++++..+..|. ++++|++|++++|.+. .++...+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 56777777776 3554443 3467777777777766666665 6666666666666665 2332222245555555555
Q ss_pred CCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchh
Q 048402 405 SNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIE 484 (677)
Q Consensus 405 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (677)
+|++++..+..|..+++|+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~------------------------------------------------------------ 116 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEV------------------------------------------------------------ 116 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCE------------------------------------------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCE------------------------------------------------------------
Confidence 55555444444444444444
Q ss_pred hhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccc---ccCCCCcEEECCCCcccccCccccccC
Q 048402 485 YDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI---GAMRSLESIDFSVNQLSGEIPQSMSNL 561 (677)
Q Consensus 485 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l 561 (677)
|+|++|++++..|..|.++++|++|+|++|++++..+..| ..+++|+.|+|++|+++...+..+..+
T Consensus 117 ----------L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 186 (361)
T 2xot_A 117 ----------LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186 (361)
T ss_dssp ----------EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred ----------EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence 4555555554555566666666666666666664333334 456677777777777765544556666
Q ss_pred CC--CCEEEcccCcccccC
Q 048402 562 MS--LNHLNLSNNKLTGKI 578 (677)
Q Consensus 562 ~~--L~~L~ls~N~l~~~~ 578 (677)
+. ++.|++++|++.|.+
T Consensus 187 ~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 187 PAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CHHHHTTEECCSSCEECCH
T ss_pred cHhhcceEEecCCCccCCc
Confidence 55 366777777776554
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=158.79 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=87.5
Q ss_pred CEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccC
Q 048402 374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFT 453 (677)
Q Consensus 374 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~ 453 (677)
++|++++|.+.+..+...+..+++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-------- 106 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES-------- 106 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS--------
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC--------
Confidence 444444444443323222334555555555555555555555666666666666666665544444443333
Q ss_pred cccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccc
Q 048402 454 RSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPES 533 (677)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 533 (677)
|++|++++|++++..|..|.++++|++|+|++|++++..|..
T Consensus 107 --------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 107 --------------------------------------LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp --------------------------------------CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred --------------------------------------CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 367777777777777778888888888888888888777888
Q ss_pred cccCCCCcEEECCCCcccccC
Q 048402 534 IGAMRSLESIDFSVNQLSGEI 554 (677)
Q Consensus 534 ~~~l~~L~~L~Ls~N~l~~~~ 554 (677)
|..+++|++|++++|.+....
T Consensus 149 ~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 149 FDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTTCTTCCEEECCSCCEECSG
T ss_pred hcCCCCCCEEEecCcCCcCCC
Confidence 888888899999988887543
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.1e-17 Score=158.53 Aligned_cols=152 Identities=22% Similarity=0.292 Sum_probs=100.4
Q ss_pred cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402 5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84 (677)
Q Consensus 5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~ 84 (677)
+.++++++.++ .+ |..+. ++|++|+++ ++.+.+..+..|..+++|++|++++|.+++..|..|..++ +|+
T Consensus 14 ~~v~c~~~~l~-~i-P~~l~--~~l~~L~l~-~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-----~L~ 83 (220)
T 2v9t_B 14 NIVDCRGKGLT-EI-PTNLP--ETITEIRLE-QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-----SLN 83 (220)
T ss_dssp TEEECTTSCCS-SC-CSSCC--TTCCEEECC-SSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-----SCC
T ss_pred CEEEcCCCCcC-cC-CCccC--cCCCEEECC-CCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-----CCC
Confidence 45666666666 55 33332 567777777 5566655555667777777777777777766666666666 677
Q ss_pred EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeecc
Q 048402 85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGN 164 (677)
Q Consensus 85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n 164 (677)
+|++++|.++...+..|.++++|++|++++|.+++..|..|..+++|++|++++|.++ .++...|..+++|+.|++++|
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCC
Confidence 7777777777555555667777777777777777666666777777777777777776 444445666667777777666
Q ss_pred ccc
Q 048402 165 KLT 167 (677)
Q Consensus 165 ~l~ 167 (677)
.+.
T Consensus 163 ~~~ 165 (220)
T 2v9t_B 163 PFI 165 (220)
T ss_dssp CEE
T ss_pred CcC
Confidence 654
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=3.2e-18 Score=169.89 Aligned_cols=172 Identities=18% Similarity=0.319 Sum_probs=113.6
Q ss_pred ccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCce
Q 048402 320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV 399 (677)
Q Consensus 320 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 399 (677)
..+++|+.|++++|.+.+. + .+..+++|+.|++++|++++..+ +..+++|++|++++|.+. .++. + ..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l-~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-L-KDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG-G-TTCTTCC
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh-h-ccCCCCC
Confidence 3555666666666666532 2 25556666666666666664333 566666666666666665 2332 2 2566677
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeec
Q 048402 400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSE 479 (677)
Q Consensus 400 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (677)
+|++++|++++. ..+..+++|+.|++++|++++. ..+.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~-------------------------------------- 153 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS-------------------------------------- 153 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGG--------------------------------------
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhc--------------------------------------
Confidence 777777766643 3566777777777777777532 2222
Q ss_pred CCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccc
Q 048402 480 GEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSG 552 (677)
Q Consensus 480 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 552 (677)
.+++|+.|++++|++++..+ +..+++|++|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus 154 --------~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 154 --------RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --------GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred --------cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 24455788888888876554 8888999999999999884 44 48889999999999999874
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=9.7e-18 Score=182.43 Aligned_cols=105 Identities=21% Similarity=0.300 Sum_probs=45.9
Q ss_pred ccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCce
Q 048402 320 MSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMV 399 (677)
Q Consensus 320 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 399 (677)
..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.+. .+| .+ ..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l-~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SL-KDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TS-TTCTTCC
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hh-ccCCCCC
Confidence 344445555555554442 22 24444555555555555443322 444445555555554443 222 11 1344444
Q ss_pred EEEcCCCcccccCCccccCCCCCCEEeCCCCcCC
Q 048402 400 VLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF 433 (677)
Q Consensus 400 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 433 (677)
.|+|++|.+.+. ..+..+++|+.|+|++|++.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 444444444421 22444444444444444443
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=171.26 Aligned_cols=177 Identities=23% Similarity=0.225 Sum_probs=144.3
Q ss_pred cEEEcccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccC
Q 048402 253 LFLSVHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSN 332 (677)
Q Consensus 253 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 332 (677)
+.++++++.++.......+.++.|++++|.+++..+..+. ..+++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhh---hcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4566666666654444456788888888888876655332 1478999999999999988888899999999999999
Q ss_pred ccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhh---hccCCceEEEcCCCccc
Q 048402 333 NKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTG---ERFSRMVVLILRSNNFH 409 (677)
Q Consensus 333 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~L~L~~n~l~ 409 (677)
|++++..+..|..+++|+.|++++|++++..+..|.++++|+.|++++|.+. .+|...+ ..+++|+.|+|++|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9999887888999999999999999999888889999999999999999998 6777665 35889999999999999
Q ss_pred ccCCccccCCCC--CCEEeCCCCcCC
Q 048402 410 GPLPTRLCDLAF--LQILDLADNNLF 433 (677)
Q Consensus 410 ~~~~~~~~~l~~--L~~L~Ls~n~l~ 433 (677)
+..+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 766667777776 488999999875
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=4e-17 Score=155.92 Aligned_cols=150 Identities=20% Similarity=0.299 Sum_probs=73.2
Q ss_pred EEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccE
Q 048402 6 YLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELES 85 (677)
Q Consensus 6 ~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~ 85 (677)
.++.+++.++ .+ |..+ .++|++|+|+ ++.+.+..|..|..+++|++|++++|.++...+..+..++ +|++
T Consensus 23 ~v~c~~~~l~-~i-p~~~--~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-----~L~~ 92 (229)
T 3e6j_A 23 TVDCRSKRHA-SV-PAGI--PTNAQILYLH-DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-----QLTV 92 (229)
T ss_dssp EEECTTSCCS-SC-CSCC--CTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCE
T ss_pred EeEccCCCcC-cc-CCCC--CCCCCEEEcC-CCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-----CcCE
Confidence 4455555544 44 2222 2455555555 4444444444555555555555555555444444444444 5555
Q ss_pred EEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccc
Q 048402 86 LDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNK 165 (677)
Q Consensus 86 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~ 165 (677)
|++++|++++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++...|..+++|+.|++++|.
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCC
Confidence 555555555444444455555555555555554 34444555555555555555554 3333344445555555555444
Q ss_pred cc
Q 048402 166 LT 167 (677)
Q Consensus 166 l~ 167 (677)
+.
T Consensus 171 ~~ 172 (229)
T 3e6j_A 171 WD 172 (229)
T ss_dssp BC
T ss_pred cc
Confidence 43
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3e-17 Score=178.55 Aligned_cols=125 Identities=27% Similarity=0.383 Sum_probs=60.2
Q ss_pred CCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEec
Q 048402 299 KSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDV 378 (677)
Q Consensus 299 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 378 (677)
+.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++ ++ .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 444455555554442 22 24455555555555555543222 4455555555555555543 12 3455555555555
Q ss_pred CCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCC
Q 048402 379 GENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFG 434 (677)
Q Consensus 379 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 434 (677)
++|.+.+ ++. + ..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 117 s~N~l~~-l~~-l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 117 EHNGISD-ING-L-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp TTSCCCC-CGG-G-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred cCCCCCC-Ccc-c-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 5555542 221 1 1355555555555555533 344555555555555555543
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=1.4e-17 Score=154.33 Aligned_cols=90 Identities=23% Similarity=0.297 Sum_probs=70.2
Q ss_pred cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402 491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570 (677)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 570 (677)
+|++|++++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 34677777777776677777888888888888888887777778888888888888888887778888888888888888
Q ss_pred cCcccccCCC
Q 048402 571 NNKLTGKIPS 580 (677)
Q Consensus 571 ~N~l~~~~p~ 580 (677)
+|++.|.++.
T Consensus 135 ~N~l~c~c~l 144 (192)
T 1w8a_A 135 SNPFNCNCHL 144 (192)
T ss_dssp TCCBCCSGGG
T ss_pred CCCccCcCcc
Confidence 8888877664
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.2e-17 Score=153.87 Aligned_cols=153 Identities=14% Similarity=0.216 Sum_probs=91.9
Q ss_pred cCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCC
Q 048402 24 GNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQ 103 (677)
Q Consensus 24 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 103 (677)
..+++|++|+++ ++.+. .+| .+..+++|++|++++|.++.. ..+..++ +|++|++++|.+++..+..+..
T Consensus 41 ~~l~~L~~L~l~-~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~-----~L~~L~l~~n~l~~~~~~~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLA-NINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLS-----NLERLRIMGKDVTSDKIPNLSG 110 (197)
T ss_dssp HHHHTCCEEEEE-SSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCT-----TCCEEEEECTTCBGGGSCCCTT
T ss_pred hhcCCccEEecc-CCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCC-----CCCEEEeECCccCcccChhhcC
Confidence 445666666666 44444 334 466666666666666654422 2455555 6666666666666555666666
Q ss_pred CCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccc-cccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccE
Q 048402 104 FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNK-LNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182 (677)
Q Consensus 104 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 182 (677)
+++|++|++++|.+++..+..+..+++|++|++++|. +. .++ .+.++++|+.|++++|.+++.. .+..+++|+.
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~ 185 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQ 185 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCE
Confidence 6666666666666665556666666666666666665 43 444 3666666666666666665432 5556666666
Q ss_pred EEeecccCC
Q 048402 183 LGFHNCYVG 191 (677)
Q Consensus 183 L~l~~n~~~ 191 (677)
|++++|.++
T Consensus 186 L~l~~N~i~ 194 (197)
T 4ezg_A 186 LYAFSQTIG 194 (197)
T ss_dssp EEECBC---
T ss_pred EEeeCcccC
Confidence 666666654
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.2e-17 Score=162.96 Aligned_cols=80 Identities=19% Similarity=0.354 Sum_probs=62.1
Q ss_pred ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEccc
Q 048402 492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN 571 (677)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 571 (677)
|+.|++++|++++. + .+..+++|++|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 46677777776643 2 577888888888888888854 4 678888888888888888865 5688888888889988
Q ss_pred Cccccc
Q 048402 572 NKLTGK 577 (677)
Q Consensus 572 N~l~~~ 577 (677)
|++.+.
T Consensus 182 N~~~~~ 187 (263)
T 1xeu_A 182 QKCVNE 187 (263)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 888765
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.6e-17 Score=168.34 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=47.4
Q ss_pred cEEEcccCcccccCCcccCCCCCCc-EEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEE
Q 048402 493 KETDVSRNNLTKSIPLEMTNLKATQ-SLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLN 568 (677)
Q Consensus 493 ~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 568 (677)
+.+++++| ++...+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.++
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 56666665 5545555666666666 666666 55545556666667777777666666656566666666666654
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=4.3e-17 Score=151.86 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=57.1
Q ss_pred cEEEcccCcccccCCcccCCCCCCcEEeccCCc-ceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEccc
Q 048402 493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNS-FTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN 571 (677)
Q Consensus 493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 571 (677)
++|++++|.+++..+..+..+++|++|++++|+ +. .+| .+..+++|++|++++|++++ ++ .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 566666666665566677778888888888887 55 455 57888888888888888874 33 677888888888888
Q ss_pred Ccccc
Q 048402 572 NKLTG 576 (677)
Q Consensus 572 N~l~~ 576 (677)
|++.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 87653
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=3e-19 Score=193.22 Aligned_cols=84 Identities=23% Similarity=0.329 Sum_probs=46.6
Q ss_pred cEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccC-ccccccCCCCCEEEccc
Q 048402 493 KETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEI-PQSMSNLMSLNHLNLSN 571 (677)
Q Consensus 493 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~ 571 (677)
+.|++++|.++ .+|..++++++|+.|+|++|++++ +| .++++++|+.|+|++|++++.. |..+..+++|+.|++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 55555555555 445555555555555555555553 44 4555555555555555555444 55555555555555555
Q ss_pred CcccccCC
Q 048402 572 NKLTGKIP 579 (677)
Q Consensus 572 N~l~~~~p 579 (677)
|++++.+|
T Consensus 543 N~l~~~~~ 550 (567)
T 1dce_A 543 NSLCQEEG 550 (567)
T ss_dssp SGGGGSSS
T ss_pred CcCCCCcc
Confidence 55555444
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2.7e-17 Score=166.66 Aligned_cols=102 Identities=10% Similarity=0.020 Sum_probs=67.7
Q ss_pred CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCcc-EEECcCCcccccCCccCcCCCCCCEE
Q 048402 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLI-WLLLGKNRLSGTIPVSLKNCTALESL 376 (677)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L 376 (677)
+++|+.+++++|.++...+.+|.++++|+.+++++| ++...+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 466666666666666555666777777777777666 5555666677777776 777766 5655666667777777777
Q ss_pred ecCCCcccccCChhhhhccCCceEEE
Q 048402 377 DVGENEFVGNIPTWTGERFSRMVVLI 402 (677)
Q Consensus 377 ~l~~n~l~~~~~~~~~~~l~~L~~L~ 402 (677)
++++|.+. .++...|.++++|+.++
T Consensus 303 ~l~~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred EeCCCccC-ccchhhhcCCcchhhhc
Confidence 77666665 56666666666666664
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3.6e-17 Score=159.60 Aligned_cols=122 Identities=25% Similarity=0.325 Sum_probs=67.2
Q ss_pred CcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecC
Q 048402 300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG 379 (677)
Q Consensus 300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 379 (677)
+++.++++++.+.+.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4455556666555322 35566666666666666653 33 45566666666666666664333 5666666666666
Q ss_pred CCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC
Q 048402 380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF 433 (677)
Q Consensus 380 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 433 (677)
+|++. .+|... . ++|++|++++|++++. ..+..+++|+.|++++|+++
T Consensus 94 ~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 94 RNRLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp SSCCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred CCccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence 66665 233321 1 5555555555555532 23555555555555555554
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.2e-16 Score=148.00 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=108.9
Q ss_pred CEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCc-cccCCCCCCEEeCCCCcCCCCcCccccccccCcccccc
Q 048402 374 ESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPT-RLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSF 452 (677)
Q Consensus 374 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~ 452 (677)
+++++++|.+. .+|..++ .++++|++++|.+++..+. .+..+++|++|++++|++++..|..|.++++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 56666666664 5665443 3677777777777655543 46777788888888887776666665554444
Q ss_pred CcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccc
Q 048402 453 TRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPE 532 (677)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 532 (677)
++|++++|++++..+..|.++++|++|+|++|++++..|.
T Consensus 81 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 81 ----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp ----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred ----------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence 7888888888888888889999999999999999988899
Q ss_pred ccccCCCCcEEECCCCcccccCcc-ccccCCCCCEEEcccCcccccCCC
Q 048402 533 SIGAMRSLESIDFSVNQLSGEIPQ-SMSNLMSLNHLNLSNNKLTGKIPS 580 (677)
Q Consensus 533 ~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~~~~p~ 580 (677)
.|..+++|++|++++|.+.+..+- .+.. .++...+..+...|..|.
T Consensus 121 ~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp SSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSST
T ss_pred HhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCCCh
Confidence 999999999999999999865442 1111 122223445555555554
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.3e-19 Score=196.11 Aligned_cols=197 Identities=19% Similarity=0.165 Sum_probs=139.4
Q ss_pred cCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCc-------------CCcccchhhhhccccCcCCccEEE-cc
Q 048402 24 GNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH-------------LSQEISEILNIFSGCVSIELESLD-LR 89 (677)
Q Consensus 24 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~~~~~~L~~L~-L~ 89 (677)
..+++|++|+|+ ++.+. .+|..++++++|+.|++++|. ..+.+|..++.+. +|+.|+ ++
T Consensus 346 ~~~~~L~~L~Ls-~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~-----~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELS-VEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS-----TLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCC-HHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHH-----HHHHHCGGG
T ss_pred ccCccceeccCC-hhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHH-----hcccCcchh
Confidence 568888899998 55554 678888888899988887664 5666777788887 788887 55
Q ss_pred cCcCccccc-----cccCC--CCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEee
Q 048402 90 SSSISGHLT-----DQLGQ--FKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG 162 (677)
Q Consensus 90 ~n~l~~~~~-----~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~ 162 (677)
.|.+..... ..+.. ...|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|. .++++++|+.|+++
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQAS 494 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECC
T ss_pred hcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch-hhhcCCCCCEEECC
Confidence 553321100 00000 1258899999999885 565 888999999999999988 8887 78889999999999
Q ss_pred ccccceecCCCCCCCcCccEEEeecccCCCCC-ChhccCCCCCCEEEccCCCCCCccch--HHHhccCCccEEE
Q 048402 163 GNKLTLEVRHDWIPPFQLVALGFHNCYVGSRF-PQWLHSQKHLQYLNLLNSGMSDLFPI--RFLKSAFQLKFLD 233 (677)
Q Consensus 163 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~--~~~~~~~~L~~L~ 233 (677)
+|.+++.. .+..+++|+.|++++|.+.+.. |..++.+++|+.|++++|.+++..+. .+...+++|+.|+
T Consensus 495 ~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 495 DNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 98888642 5666777777777777776665 77777777777777777777665432 2333456666664
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=3.3e-17 Score=182.96 Aligned_cols=190 Identities=20% Similarity=0.207 Sum_probs=115.6
Q ss_pred ecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCccc
Q 048402 305 KLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFV 384 (677)
Q Consensus 305 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 384 (677)
++..|.+. ..+..|..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..|..+++|++|+|++|.++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34444444 55777888889999999999888 67767778899999999999988 77888889999999999999988
Q ss_pred ccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCC
Q 048402 385 GNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPL 464 (677)
Q Consensus 385 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~ 464 (677)
.+|..+. .+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+..+...
T Consensus 284 -~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~------------------ 342 (727)
T 4b8c_D 284 -SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT------------------ 342 (727)
T ss_dssp -SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH------------------
T ss_pred -ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh------------------
Confidence 7887766 7899999999999987 677789999999999999999988888766543221
Q ss_pred CCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCC--------cceeeccccccc
Q 048402 465 DGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHN--------SFTGRIPESIGA 536 (677)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n--------~l~~~~p~~~~~ 536 (677)
...+++++|.+++.+|.. |+.|++++| .+.+..+..+..
T Consensus 343 ---------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~ 389 (727)
T 4b8c_D 343 ---------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD 389 (727)
T ss_dssp ---------------------------HHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred ---------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence 123678888888777753 445666666 344344444555
Q ss_pred CCCCcEEECCCCccc
Q 048402 537 MRSLESIDFSVNQLS 551 (677)
Q Consensus 537 l~~L~~L~Ls~N~l~ 551 (677)
+..++...+++|.+.
T Consensus 390 l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 390 LAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------CCC
T ss_pred ccccceeeeeccccc
Confidence 666666777777664
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=8.5e-16 Score=142.13 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=78.2
Q ss_pred cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402 491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570 (677)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 570 (677)
+|+.|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|+++...+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 34777777777777777789999999999999999998888889999999999999999997766779999999999999
Q ss_pred cCcccccCCC
Q 048402 571 NNKLTGKIPS 580 (677)
Q Consensus 571 ~N~l~~~~p~ 580 (677)
+|++.|.++-
T Consensus 135 ~N~~~C~c~l 144 (193)
T 2wfh_A 135 ANPLYCDCNM 144 (193)
T ss_dssp SSCEECSGGG
T ss_pred CCCeecCCcC
Confidence 9999987653
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=5.2e-17 Score=181.39 Aligned_cols=190 Identities=19% Similarity=0.175 Sum_probs=106.6
Q ss_pred cccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcc
Q 048402 329 ELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNF 408 (677)
Q Consensus 329 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 408 (677)
+++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+. .+++|++|+|++|.+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRL 282 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCC
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcC
Confidence 44445555 55777888888888888888887 55666668888888888888887 7777664 688888888888888
Q ss_pred cccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhh
Q 048402 409 HGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEI 488 (677)
Q Consensus 409 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (677)
+ .+|..+..+++|++|+|++|.+. .+|..|.++++|
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L------------------------------------------ 318 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL------------------------------------------ 318 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC------------------------------------------
T ss_pred C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc------------------------------------------
Confidence 8 66788888888888888888876 666666555444
Q ss_pred hccccEEEcccCcccccCCcccCCCCC-CcEEeccCCcceeecccccccCCCCcEEECCCC--------cccccCccccc
Q 048402 489 LNLVKETDVSRNNLTKSIPLEMTNLKA-TQSLNFSHNSFTGRIPESIGAMRSLESIDFSVN--------QLSGEIPQSMS 559 (677)
Q Consensus 489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~ 559 (677)
+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|. .|+.|++++| .+.+..+..+.
T Consensus 319 ----~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~ 388 (727)
T 4b8c_D 319 ----QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLAT 388 (727)
T ss_dssp ----CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------------------
T ss_pred ----cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhh
Confidence 78888888888877777655432 23467888888877765 3455666666 34444444555
Q ss_pred cCCCCCEEEcccCcccc
Q 048402 560 NLMSLNHLNLSNNKLTG 576 (677)
Q Consensus 560 ~l~~L~~L~ls~N~l~~ 576 (677)
.+..+....+++|-+.+
T Consensus 389 ~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 389 DLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp -------------CCCG
T ss_pred cccccceeeeecccccc
Confidence 66667777778887753
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=7.5e-16 Score=139.49 Aligned_cols=132 Identities=24% Similarity=0.341 Sum_probs=67.5
Q ss_pred CCCCEEecCCCCCCC-ccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCC
Q 048402 27 TSISRLDLSLNTGPE-GRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFK 105 (677)
Q Consensus 27 ~~L~~L~Ls~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 105 (677)
++|++|+++ ++.+. +.+|..+..+++|++|++++|.+++. ..+..++ +|++|++++|.+++.+|..+.+++
T Consensus 24 ~~L~~L~l~-~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLD-NCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-----KLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECC-SCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-----SCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECC-CCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-----CCCEEECcCCcCchHHHHHHhhCC
Confidence 455555555 34443 44455555555555555555555543 3344444 555555555555544454444555
Q ss_pred CCCEEECcCCccccCC-CcCCCCCCCCCEEEccccccccccCh---hhhhCCCCCCEEEeeccccc
Q 048402 106 NLDNLDLANNSIVGPI-PQSLGHLSNLRVLQIYNNKLNGTLSE---IHFSNLTKLSWFRVGGNKLT 167 (677)
Q Consensus 106 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~l~~---~~~~~l~~L~~L~l~~n~l~ 167 (677)
+|++|++++|.+++.. +..+..+++|++|++++|.++ .++. ..+..+++|+.|++++|.+.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555555555321 144555555555555555554 2222 24555555555555555544
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.6e-15 Score=134.27 Aligned_cols=128 Identities=23% Similarity=0.334 Sum_probs=59.7
Q ss_pred CCCCEEecCCCCCCC-ccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCC
Q 048402 27 TSISRLDLSLNTGPE-GRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFK 105 (677)
Q Consensus 27 ~~L~~L~Ls~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 105 (677)
++|++|+++ ++.+. +.+|..+..+++|++|++++|.+++. ..+..++ +|++|++++|.+++.+|..+..++
T Consensus 17 ~~l~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLD-NSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLN-----KLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECT-TCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCT-----TCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEcc-CCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCC-----CCCEEECCCCcccchHHHHhhhCC
Confidence 444555554 33333 34444444445555555555544433 3333344 455555555555444444444455
Q ss_pred CCCEEECcCCccccC-CCcCCCCCCCCCEEEccccccccccC--hhhhhCCCCCCEEEee
Q 048402 106 NLDNLDLANNSIVGP-IPQSLGHLSNLRVLQIYNNKLNGTLS--EIHFSNLTKLSWFRVG 162 (677)
Q Consensus 106 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~l~--~~~~~~l~~L~~L~l~ 162 (677)
+|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ...+..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555555554432 12445555555555555555542222 0245555555555543
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.6e-15 Score=137.34 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=54.8
Q ss_pred ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeec-ccccccCCCCcEEECCCCcccccCc---cccccCCCCCEE
Q 048402 492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRI-PESIGAMRSLESIDFSVNQLSGEIP---QSMSNLMSLNHL 567 (677)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L 567 (677)
|++|++++|++++.+|..+..+++|++|++++|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|
T Consensus 73 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 355555555555555555556677777777777776432 2567777777777777777774443 366777777777
Q ss_pred EcccCccc
Q 048402 568 NLSNNKLT 575 (677)
Q Consensus 568 ~ls~N~l~ 575 (677)
++++|.+.
T Consensus 153 ~l~~n~~~ 160 (168)
T 2ell_A 153 DGYDREDQ 160 (168)
T ss_dssp TTEETTSC
T ss_pred cCCCCChh
Confidence 77777765
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=3.9e-15 Score=136.02 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=71.9
Q ss_pred ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEccc
Q 048402 492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN 571 (677)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 571 (677)
|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 36666666666656666678888999999999999876667788899999999999999866666678889999999999
Q ss_pred CcccccCCC
Q 048402 572 NKLTGKIPS 580 (677)
Q Consensus 572 N~l~~~~p~ 580 (677)
|++.|.+|.
T Consensus 134 N~~~~~~~~ 142 (177)
T 2o6r_A 134 NPWDCSCPR 142 (177)
T ss_dssp SCBCCCHHH
T ss_pred CCeeccCcc
Confidence 999887763
No 130
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=3.6e-14 Score=147.47 Aligned_cols=333 Identities=13% Similarity=0.077 Sum_probs=201.8
Q ss_pred ecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccc
Q 048402 17 TIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGH 96 (677)
Q Consensus 17 ~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~ 96 (677)
.|...+|.+|++|+.+.+. +. ++..-..+|.++++|+.+++..+ ++......|..+. .|+.+.+..+ +...
T Consensus 61 sIg~~AF~~c~~L~~i~lp-~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~-----~L~~i~~p~~-l~~i 131 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIP-ST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY-----ALKSILLPLM-LKSI 131 (394)
T ss_dssp EECTTTTTTCTTEEEEECC-TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT-----TCCCCCCCTT-CCEE
T ss_pred EhHHHHhhCCCCceEEEeC-CC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc-----cchhhcccCc-eeee
Confidence 5667788888888888887 32 44344567888888888888654 5555556666666 6777666543 3434
Q ss_pred cccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCC
Q 048402 97 LTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIP 176 (677)
Q Consensus 97 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 176 (677)
...+|.++..++....... ......+|.++++|+.+.+.++. . .++...|.++.+|+.+++..+ ++.....+|..
T Consensus 132 ~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~ 206 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE 206 (394)
T ss_dssp CTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT
T ss_pred cceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhcc
Confidence 4556666654433333222 22344667788888888876543 3 566667778888887777655 55555666666
Q ss_pred CcCccEEEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEE
Q 048402 177 PFQLVALGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLS 256 (677)
Q Consensus 177 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 256 (677)
+..|+.+.+.++.. .+........+|+.+.+... ++.+.. ..+..+..++.+.+..+...-....+.
T Consensus 207 ~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~-~~~i~~-~~f~~~~~l~~~~~~~~~~~i~~~~F~--------- 273 (394)
T 4fs7_A 207 CILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDS-FTELGK-SVFYGCTDLESISIQNNKLRIGGSLFY--------- 273 (394)
T ss_dssp CTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTT-CCEECS-STTTTCSSCCEEEECCTTCEECSCTTT---------
T ss_pred ccccceeecCCCce--EeehhhcccCCCceEEECCC-ceeccc-ccccccccceeEEcCCCcceeeccccc---------
Confidence 66666666554322 11222333455666655433 222211 122334455555554432221111111
Q ss_pred cccCCCCCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCcccc
Q 048402 257 VHSNNMSGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFT 336 (677)
Q Consensus 257 l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 336 (677)
.+..++.+....+.+.. . .+..+.+|+.+.+..+ +......+|.++.+|+.+++..+ ++
T Consensus 274 ------------~~~~l~~~~~~~~~i~~---~----~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 274 ------------NCSGLKKVIYGSVIVPE---K----TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp ------------TCTTCCEEEECSSEECT---T----TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC
T ss_pred ------------cccccceeccCceeecc---c----cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc
Confidence 23445555544433211 1 2334778888888765 55566778888999999998754 66
Q ss_pred ccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCceEE
Q 048402 337 GKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRMVVL 401 (677)
Q Consensus 337 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 401 (677)
.....+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ +. .+ ...+.++++|+.+
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QY-RYDFEDTTKFKWI 393 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GG-GGGBCTTCEEEEE
T ss_pred EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Eh-hheecCCCCCcEE
Confidence 566788889999999999776 66677788999999999998765 22 22 2345567777654
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.5e-15 Score=134.40 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=89.3
Q ss_pred cCCceEEEcCCCccc-ccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccce
Q 048402 395 FSRMVVLILRSNNFH-GPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEK 473 (677)
Q Consensus 395 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (677)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 355666666666666 55666666677777777777766533 22222
Q ss_pred eeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceee-cccccccCCCCcEEECCCCcccc
Q 048402 474 ASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGR-IPESIGAMRSLESIDFSVNQLSG 552 (677)
Q Consensus 474 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~ 552 (677)
+++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..++.+++|++|++++|.+++
T Consensus 63 ---------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 63 ---------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ---------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred ---------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence 33447777777777766676677788888888888888753 34678888888888888888886
Q ss_pred cCc---cccccCCCCCEEEccc
Q 048402 553 EIP---QSMSNLMSLNHLNLSN 571 (677)
Q Consensus 553 ~~p---~~l~~l~~L~~L~ls~ 571 (677)
..+ ..+..+++|+.||+++
T Consensus 128 ~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 128 LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp STTHHHHHHHHCTTCCEETTBC
T ss_pred hHHHHHHHHHHCCCcccccCCC
Confidence 555 4678888888888763
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=9.8e-14 Score=143.35 Aligned_cols=273 Identities=10% Similarity=0.026 Sum_probs=190.6
Q ss_pred ccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccC
Q 048402 23 LGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLG 102 (677)
Q Consensus 23 ~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~ 102 (677)
+..+..++.+.+. + .++..-..+|.++ +|+.+.+..+ ++......|.. . +|+.+.+.. .++.+.+.+|.
T Consensus 109 ~~~~~~l~~i~ip-~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~-----~L~~i~lp~-~l~~I~~~aF~ 177 (401)
T 4fdw_A 109 TEILKGYNEIILP-N-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-S-----TVQEIVFPS-TLEQLKEDIFY 177 (401)
T ss_dssp EEECSSCSEEECC-T-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-C-----CCCEEECCT-TCCEECSSTTT
T ss_pred EEecCCccEEEEC-C-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-C-----CceEEEeCC-CccEehHHHhh
Confidence 3456788888887 4 3344445677775 7999998765 66666666665 3 588998886 66666778899
Q ss_pred CCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccE
Q 048402 103 QFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVA 182 (677)
Q Consensus 103 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 182 (677)
+|++|+.+++.+|.++.+...+|. +.+|+.+.+..+ +. .++..+|.++++|+.+++..+ ++.....+|.. .+|+.
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 999999999999888866666666 689999999854 65 788888999999999999874 66677778877 78999
Q ss_pred EEeecccCCCCCChhccCCCCCCEEEccCCCCCCccchHHHhccCCccEEECCCccCccccCCccccccccEEEcccCCC
Q 048402 183 LGFHNCYVGSRFPQWLHSQKHLQYLNLLNSGMSDLFPIRFLKSAFQLKFLDLGLNQFHGQITDLTKVTQLLFLSVHSNNM 262 (677)
Q Consensus 183 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~l~~n~~ 262 (677)
+.+. +.+......+|.++++|+.+++.++.+... ......
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~--------------------~~~~I~------------------- 292 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD--------------------PEAMIH------------------- 292 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC--------------------TTCEEC-------------------
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC--------------------cccEEC-------------------
Confidence 9994 446666678899999999999988865411 000000
Q ss_pred CCCCCCCCCCccEEEccCCcccccCChhHhhccCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcC
Q 048402 263 SGPLPLISSNLVYLDLSNNSFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNS 342 (677)
Q Consensus 263 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 342 (677)
+. .+..+++|+.+.+.+ .+......+|.+|++|+.+++..+ ++.....+
T Consensus 293 -------------------------~~----aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 293 -------------------------PY----CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp -------------------------TT----TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred -------------------------HH----HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 00 122245555555552 344455566777777777777544 55556667
Q ss_pred cCCCCCccEEECcCCcccccCCccCcCCC-CCCEEecCCCcc
Q 048402 343 LGSLTSLIWLLLGKNRLSGTIPVSLKNCT-ALESLDVGENEF 383 (677)
Q Consensus 343 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l 383 (677)
|.++ +|+.+++.+|.+....+..|.+++ .++.+.+..+.+
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 7777 777777777777666666677764 677777776654
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=6.3e-14 Score=144.80 Aligned_cols=219 Identities=11% Similarity=0.092 Sum_probs=150.5
Q ss_pred CcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecC
Q 048402 300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG 379 (677)
Q Consensus 300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 379 (677)
+|+.+.+.. .+....+.+|.+|++|+.+++++|.++.....+|. +.+|+.+.+..+ +..+...+|.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 577888775 56656677888888888888888888866666666 578888888744 666777788888888888887
Q ss_pred CCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcCC-----CCcCccccccccCccccccCc
Q 048402 380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLF-----GTIPKCINNITGMVAANSFTR 454 (677)
Q Consensus 380 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~p~~~~~l~~l~~~~~~~~ 454 (677)
++ +. .++...|.+ .+|+.+.+ .+.++..-..+|.+|++|+.+++.+|.+. ..-+.+|.
T Consensus 235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~------------- 297 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE------------- 297 (401)
T ss_dssp TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT-------------
T ss_pred CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh-------------
Confidence 75 33 566666654 67888888 44566566777888888888888777653 11112222
Q ss_pred ccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccccc
Q 048402 455 SSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESI 534 (677)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 534 (677)
.+++|+.+++. +.++.....+|.++++|+.++|..| ++...+.+|
T Consensus 298 ---------------------------------~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 298 ---------------------------------GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp ---------------------------------TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred ---------------------------------CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 34444666666 3466555667777777777777554 554556677
Q ss_pred ccCCCCcEEECCCCcccccCccccccCC-CCCEEEcccCcc
Q 048402 535 GAMRSLESIDFSVNQLSGEIPQSMSNLM-SLNHLNLSNNKL 574 (677)
Q Consensus 535 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l 574 (677)
.++ +|+.+++++|.+....+..|..++ .++.|.+..+.+
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 777 777777777777766666676663 667777766554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=132.96 Aligned_cols=127 Identities=24% Similarity=0.398 Sum_probs=77.2
Q ss_pred CEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCCE
Q 048402 30 SRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLDN 109 (677)
Q Consensus 30 ~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 109 (677)
++++++ ++.+. .+|..+. ++|++|++++|.++ .+|..+..++ +|++|++++|.+++..+..|.++++|++
T Consensus 13 ~~l~~~-~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~-----~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCS-NKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYK-----HLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECT-TSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEcC-CCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhccc-----CCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 455665 44433 3343332 35666666666665 3445566666 6666666666666655566666666666
Q ss_pred EECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEeeccccc
Q 048402 110 LDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVGGNKLT 167 (677)
Q Consensus 110 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~~n~l~ 167 (677)
|++++|.+++..+..|..+++|++|++++|.++ .++...|..+++|+.|++++|.+.
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 666666666655566666666666666666665 455445666666666666666654
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=2.2e-13 Score=141.50 Aligned_cols=66 Identities=9% Similarity=0.121 Sum_probs=40.5
Q ss_pred ccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhhhCCCCCCEEEee
Q 048402 94 SGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHFSNLTKLSWFRVG 162 (677)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~l~ 162 (677)
+.+-..+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++ .++..+|.++..|+.+.+.
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhccc
Confidence 3344556777777777777543 55455566777777777777544 43 5666667777766665544
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=3.4e-14 Score=129.68 Aligned_cols=132 Identities=14% Similarity=0.219 Sum_probs=81.2
Q ss_pred cEEEccCCCCceecCCccccCCCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCcc
Q 048402 5 EYLSLRNNKLQGTIDSEALGNLTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELE 84 (677)
Q Consensus 5 ~~L~Ls~n~~~~~i~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~ 84 (677)
+.++++++.++ .+ |..+ .++|++|+++ ++.+.+..+..+..+++|++|++++|.+++..+..+..++ +|+
T Consensus 10 ~~l~~~~~~l~-~~-p~~~--~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~ 79 (177)
T 2o6r_A 10 TEIRCNSKGLT-SV-PTGI--PSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-----KLT 79 (177)
T ss_dssp TEEECCSSCCS-SC-CTTC--CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-----TCC
T ss_pred CEEEecCCCCc-cC-CCCC--CCCCcEEEeC-CCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-----ccC
Confidence 55666666665 44 3222 3566777776 5555555455566666677777766666655555556666 666
Q ss_pred EEEcccCcCccccccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccC
Q 048402 85 SLDLRSSSISGHLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLS 146 (677)
Q Consensus 85 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~ 146 (677)
+|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66666666665555556666666666666666665444445666666666666666654443
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4e-14 Score=129.03 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=59.1
Q ss_pred ccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeeccc--ccccCCCCcEEECCCCcccccCccc----cccCCCCC
Q 048402 492 VKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPE--SIGAMRSLESIDFSVNQLSGEIPQS----MSNLMSLN 565 (677)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~ 565 (677)
|+.|++++|++++..+..+..+++|++|++++|++. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+
T Consensus 66 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 66 LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp CCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred CCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccc
Confidence 455666666665444444577778888888888886 4555 6778888888888888887 45553 77888888
Q ss_pred EEEcccCcccc
Q 048402 566 HLNLSNNKLTG 576 (677)
Q Consensus 566 ~L~ls~N~l~~ 576 (677)
.||+++|....
T Consensus 144 ~Ld~~~n~~~~ 154 (176)
T 1a9n_A 144 VLDFQKVKLKE 154 (176)
T ss_dssp EETTEECCHHH
T ss_pred eeCCCcCCHHH
Confidence 88888887653
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.1e-13 Score=125.13 Aligned_cols=90 Identities=22% Similarity=0.217 Sum_probs=81.2
Q ss_pred cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402 491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570 (677)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 570 (677)
.++.|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 35888999999998888899999999999999999997777788999999999999999997777789999999999999
Q ss_pred cCcccccCCC
Q 048402 571 NNKLTGKIPS 580 (677)
Q Consensus 571 ~N~l~~~~p~ 580 (677)
+|++.|.++.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999988764
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=6.1e-14 Score=127.79 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=98.9
Q ss_pred ccccCCCCCCEEecCCCCCCCccCchhhcCCC-CCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccccc
Q 048402 21 EALGNLTSISRLDLSLNTGPEGRIPRSMASLC-NLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTD 99 (677)
Q Consensus 21 ~~~~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~ 99 (677)
..+..+++|++|+++ ++.+.. ++. +..+. +|++|++++|.+++. ..+..++ +|++|++++|.+++..+.
T Consensus 13 ~~~~~~~~L~~L~l~-~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~-----~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 13 AQYTNAVRDRELDLR-GYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLR-----RLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp CEEECTTSCEEEECT-TSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCS-----SCCEEECCSSCCCEECSC
T ss_pred HhcCCcCCceEEEee-CCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCC-----CCCEEECCCCcccccCcc
Confidence 346677888888888 566653 344 44444 888888888888764 4566666 788888888888866555
Q ss_pred ccCCCCCCCEEECcCCccccCCCc--CCCCCCCCCEEEccccccccccChh---hhhCCCCCCEEEeeccccc
Q 048402 100 QLGQFKNLDNLDLANNSIVGPIPQ--SLGHLSNLRVLQIYNNKLNGTLSEI---HFSNLTKLSWFRVGGNKLT 167 (677)
Q Consensus 100 ~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~l~~~---~~~~l~~L~~L~l~~n~l~ 167 (677)
.|..+++|++|++++|.++ .+|. .+..+++|++|++++|.+. .+|.. .+..+++|+.|++++|...
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5678888888888888886 4554 6778888888888888886 56653 4778888888888887654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.5e-15 Score=141.42 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=52.8
Q ss_pred hccccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecc-cccccCCCCcEEECCCCcccccCccc----------
Q 048402 489 LNLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIP-ESIGAMRSLESIDFSVNQLSGEIPQS---------- 557 (677)
Q Consensus 489 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~---------- 557 (677)
+++|+.|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 3444667777776664 33 46667777777777777763322 35667777777777777776655542
Q ss_pred cccCCCCCEEEcccCccc
Q 048402 558 MSNLMSLNHLNLSNNKLT 575 (677)
Q Consensus 558 l~~l~~L~~L~ls~N~l~ 575 (677)
+..+++|+.|| +|+++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 66677777776 55554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=3.3e-13 Score=122.25 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=77.9
Q ss_pred cccEEEcccCcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402 491 LVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570 (677)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 570 (677)
.|+.|++++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 35788888888888888889999999999999999997666678899999999999999997666679999999999999
Q ss_pred cCcccccCCC
Q 048402 571 NNKLTGKIPS 580 (677)
Q Consensus 571 ~N~l~~~~p~ 580 (677)
+|++.+.++.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9999987663
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=4.3e-11 Score=124.20 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=80.7
Q ss_pred cCCCCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCC
Q 048402 295 INEPKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALE 374 (677)
Q Consensus 295 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 374 (677)
+..+..|+.+.+..+... ....+|.++++|+.+.+. +.++.....+|.++.+|+.+.+..+ ++.+...+|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 334667777777655433 555667777788887775 3455456667777888888887654 5556667788888888
Q ss_pred EEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 048402 375 SLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432 (677)
Q Consensus 375 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 432 (677)
.+.+..+ +. .+....|.+|.+|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 338 ~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 338 RIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 8887654 43 6677777777888888777765431 3456667777777766544
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=4.2e-15 Score=138.44 Aligned_cols=162 Identities=16% Similarity=0.175 Sum_probs=97.8
Q ss_pred cccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhhccCCc
Q 048402 319 WMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGERFSRM 398 (677)
Q Consensus 319 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 398 (677)
|.....++.++++.+.+.+..|. ++ .+|..+..+++|++|++++|.+.+ +| .+ ..+++|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~-~~l~~L 72 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SL-SGMENL 72 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CH-HHHTTC
T ss_pred HHhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-cc-ccCCCC
Confidence 45566777777777777765554 00 112234444555555555555442 44 22 245555
Q ss_pred eEEEcCCCcccccCCccccCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEee
Q 048402 399 VVLILRSNNFHGPLPTRLCDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVS 478 (677)
Q Consensus 399 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (677)
++|++++|.++ .+|..+..+++|++|++++|++++ +| .+
T Consensus 73 ~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~-------------------------------------- 111 (198)
T 1ds9_A 73 RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI-------------------------------------- 111 (198)
T ss_dssp CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HH--------------------------------------
T ss_pred CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cc--------------------------------------
Confidence 55555555555 344445555666677776666653 22 12
Q ss_pred cCCchhhhhhhccccEEEcccCcccccCC-cccCCCCCCcEEeccCCcceeeccc----------ccccCCCCcEEECCC
Q 048402 479 EGEAIEYDEILNLVKETDVSRNNLTKSIP-LEMTNLKATQSLNFSHNSFTGRIPE----------SIGAMRSLESIDFSV 547 (677)
Q Consensus 479 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~Ls~ 547 (677)
..+++|+.|++++|++++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|| +
T Consensus 112 --------~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~ 181 (198)
T 1ds9_A 112 --------EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--G 181 (198)
T ss_dssp --------HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--C
T ss_pred --------ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--C
Confidence 234555777888877775332 4678888999999999988766554 378899999887 6
Q ss_pred Ccccc
Q 048402 548 NQLSG 552 (677)
Q Consensus 548 N~l~~ 552 (677)
|.++.
T Consensus 182 ~~i~~ 186 (198)
T 1ds9_A 182 MPVDV 186 (198)
T ss_dssp GGGTT
T ss_pred cccCH
Confidence 76653
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=2.8e-11 Score=125.63 Aligned_cols=127 Identities=10% Similarity=0.121 Sum_probs=99.0
Q ss_pred CcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecC
Q 048402 300 SLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVG 379 (677)
Q Consensus 300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 379 (677)
.+..+.+.. .+......+|.++..|+.+.+..+... ....+|.+++.|+.+.+. +.++.+...+|.+|.+|+.+++.
T Consensus 243 ~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 243 EDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp CCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred ccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence 344444433 233355678999999999999876544 667789999999999996 45666777899999999999998
Q ss_pred CCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 048402 380 ENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADNNL 432 (677)
Q Consensus 380 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 432 (677)
.+ ++ .+....|.++.+|+.+.+..+ ++..-..+|.+|++|+.+++.++..
T Consensus 320 ~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 320 EG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred Cc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 65 43 677788888999999999654 6656678899999999999988754
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=5e-12 Score=114.10 Aligned_cols=108 Identities=15% Similarity=0.256 Sum_probs=85.4
Q ss_pred CCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCC
Q 048402 29 ISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLD 108 (677)
Q Consensus 29 L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 108 (677)
.++++++ ++.+.. +|..+. ++|++|++++|.+++..+..|..+. +|++|++++|++++..+..|.++++|+
T Consensus 11 ~~~l~~s-~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 11 GTTVDCS-GKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLT-----QLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TTEEECT-TSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-----TCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCEEEeC-CCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcc-----cCCEEECCCCCcCccChhhccCCCCCC
Confidence 5678887 555553 555443 6788888888888888788888888 888888888888877777788888899
Q ss_pred EEECcCCccccCCCcCCCCCCCCCEEEcccccccccc
Q 048402 109 NLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTL 145 (677)
Q Consensus 109 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l 145 (677)
+|++++|.+++..+..|..+++|++|++++|.+....
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999999888766667888889999999988886443
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=8e-12 Score=113.08 Aligned_cols=106 Identities=16% Similarity=0.287 Sum_probs=86.9
Q ss_pred CCEEecCCCCCCCccCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccccccccCCCCCCC
Q 048402 29 ISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQLGQFKNLD 108 (677)
Q Consensus 29 L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 108 (677)
-+.++++ ++.+. .+|..+. ++|++|++++|.+++..|..+..++ +|++|+|++|++++..+..|.++++|+
T Consensus 14 ~~~l~~~-~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 14 QTLVNCQ-NIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLV-----NLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SSEEECC-SSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcEEEeC-CCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCc-----CCCEEECCCCCCCccChhHhCCcchhh
Confidence 3678888 66554 5666554 7889999999998888888888888 899999999999877677788899999
Q ss_pred EEECcCCccccCCCcCCCCCCCCCEEEcccccccc
Q 048402 109 NLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNG 143 (677)
Q Consensus 109 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 143 (677)
+|++++|.+++..+..|..+++|++|++++|.+..
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99999999986666668899999999999998873
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1.2e-13 Score=141.19 Aligned_cols=172 Identities=19% Similarity=0.130 Sum_probs=90.2
Q ss_pred CCccEEECcCCcccccCCccCc-----CCCCCCEEecCCCcccccCChhhhhccCCceEEEcCCCcccccCCccc-----
Q 048402 347 TSLIWLLLGKNRLSGTIPVSLK-----NCTALESLDVGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRL----- 416 (677)
Q Consensus 347 ~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----- 416 (677)
+.|+.|++++|.++......+. ..++|++|++++|.+.......+...+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3555666666665533222222 225677777777766543333333345667777777777653322222
Q ss_pred cCCCCCCEEeCCCCcCCCCcCccccccccCccccccCcccCccCCCCCCCcccccceeeEeecCCchhhhhhhccccEEE
Q 048402 417 CDLAFLQILDLADNNLFGTIPKCINNITGMVAANSFTRSSQQYLPLPLDGDVILTEKASVVSEGEAIEYDEILNLVKETD 496 (677)
Q Consensus 417 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 496 (677)
...++|++|++++|.++..-...+ .......++|++|+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l------------------------------------------~~~L~~~~~L~~L~ 189 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVL------------------------------------------MEGLAGNTSVTHLS 189 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHH------------------------------------------HHHHHTCSSCCEEE
T ss_pred hcCCccceeeCCCCCCChHHHHHH------------------------------------------HHHHhcCCCcCEEe
Confidence 235667777777776642100000 01112234456666
Q ss_pred cccCccccc----CCcccCCCCCCcEEeccCCcceee----cccccccCCCCcEEECCCCcccccCcccccc
Q 048402 497 VSRNNLTKS----IPLEMTNLKATQSLNFSHNSFTGR----IPESIGAMRSLESIDFSVNQLSGEIPQSMSN 560 (677)
Q Consensus 497 Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 560 (677)
|++|.+... ++..+...++|++|+|++|.+++. ++..+...++|++|+|++|.|+......+..
T Consensus 190 Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp CTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 666666532 234455566677777777776542 2233445566777777777766544444433
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.1e-11 Score=124.31 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=50.5
Q ss_pred cEEEccc-CcccccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEccc
Q 048402 493 KETDVSR-NNLTKSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSN 571 (677)
Q Consensus 493 ~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 571 (677)
+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 5555553 555555555566666666666666666665566666666666666666666644444444444 66666666
Q ss_pred CcccccC
Q 048402 572 NKLTGKI 578 (677)
Q Consensus 572 N~l~~~~ 578 (677)
|++.|.+
T Consensus 113 N~~~c~c 119 (347)
T 2ifg_A 113 NPLHCSC 119 (347)
T ss_dssp SCCCCCG
T ss_pred CCccCCC
Confidence 6666544
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=3.3e-12 Score=130.64 Aligned_cols=170 Identities=22% Similarity=0.268 Sum_probs=93.8
Q ss_pred CCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCcccccccc-CCCCCCCEEECcCCccccCCCcCC----
Q 048402 51 LCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGHLTDQL-GQFKNLDNLDLANNSIVGPIPQSL---- 125 (677)
Q Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~---- 125 (677)
+++|++|++++|.++......+...-.....+|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356777777777776655544444311111167777777777764322222 234567777777777754333333
Q ss_pred -CCCCCCCEEEccccccccc----cChhhhhCCCCCCEEEeeccccceecCCCCCCCcCccEEEeecccCCCCCChhccC
Q 048402 126 -GHLSNLRVLQIYNNKLNGT----LSEIHFSNLTKLSWFRVGGNKLTLEVRHDWIPPFQLVALGFHNCYVGSRFPQWLHS 200 (677)
Q Consensus 126 -~~l~~L~~L~L~~n~i~~~----l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 200 (677)
...++|++|+|++|.++.. ++. .+..+++|++|++++|.+...... .++..+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~ 209 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDR 209 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGG
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhc
Confidence 2456777777777776521 222 345666777777777766532110 12233444
Q ss_pred CCCCCEEEccCCCCCCccchHHHh---ccCCccEEECCCccCcc
Q 048402 201 QKHLQYLNLLNSGMSDLFPIRFLK---SAFQLKFLDLGLNQFHG 241 (677)
Q Consensus 201 l~~L~~L~l~~n~i~~~~~~~~~~---~~~~L~~L~Ls~n~l~~ 241 (677)
.++|++|++++|.+++.....+.. ..++|++|++++|.++.
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 556666666666665543333222 23566666666666653
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=1.1e-10 Score=118.89 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=87.2
Q ss_pred cEEEcccC-cccccCCcccCCCCCCcEEeccC-CcceeecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcc
Q 048402 493 KETDVSRN-NLTKSIPLEMTNLKATQSLNFSH-NSFTGRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLS 570 (677)
Q Consensus 493 ~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 570 (677)
..++++++ ++++ +|. +..+++|++|+|++ |.+++..+..|+++++|+.|+|++|+|++..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 46799998 8984 777 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCCCCcCcccccCC
Q 048402 571 NNKLTGKIPSSTQLQSFDASSFTGN 595 (677)
Q Consensus 571 ~N~l~~~~p~~~~~~~l~~~~~~~n 595 (677)
+|++++..|.......+..+++.+|
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CCccceeCHHHcccCCceEEEeeCC
Confidence 9999977665433333666666665
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.11 E-value=8.3e-09 Score=106.40 Aligned_cols=128 Identities=10% Similarity=0.080 Sum_probs=69.1
Q ss_pred CCCcCeEecCCCCCcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEe
Q 048402 298 PKSLIGLKLKDNSLQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLD 377 (677)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 377 (677)
+..++.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +..+...+|.+|++|+.+.
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 444555555433 22234445555666666666543 33344455566666666665433 3334445566666666666
Q ss_pred cCCCcccccCChhhhhccCCceEEEcCCCcccccCCccccCCCCCCEEeCCCC
Q 048402 378 VGENEFVGNIPTWTGERFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLADN 430 (677)
Q Consensus 378 l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 430 (677)
+.++.+. .++...|.++.+|+.+.+..+ ++.+-..+|.+|++|+.+.+..+
T Consensus 293 l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 293 MDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 6655554 455555555666666666543 44344456666666666666443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.09 E-value=2.3e-08 Score=103.14 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=67.0
Q ss_pred cCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCCcccccCCccCcCCCCCCEEecCCCcccccCChhhhh
Q 048402 314 EIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKNRLSGTIPVSLKNCTALESLDVGENEFVGNIPTWTGE 393 (677)
Q Consensus 314 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 393 (677)
....++..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++...+.
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~ 283 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCS 283 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTT
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccc
Confidence 34455666777777777554 33345566777777777777654 44455666777777777776543 32 45555555
Q ss_pred ccCCceEEEcCCCcccccCCccccCCCCCCEEeCC
Q 048402 394 RFSRMVVLILRSNNFHGPLPTRLCDLAFLQILDLA 428 (677)
Q Consensus 394 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 428 (677)
++.+|+.+.+.++.++..-..+|.+|.+|+.+++.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 56666666666655554445556666666665553
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.70 E-value=7e-09 Score=104.92 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=34.6
Q ss_pred CcCccEEEeecccCCCCCChhc---cCCCCCCEEEccCCCCCCccchHHH---hccCCccEEECCCccCcc
Q 048402 177 PFQLVALGFHNCYVGSRFPQWL---HSQKHLQYLNLLNSGMSDLFPIRFL---KSAFQLKFLDLGLNQFHG 241 (677)
Q Consensus 177 ~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~i~~~~~~~~~---~~~~~L~~L~Ls~n~l~~ 241 (677)
+++|+.|++.+|.+....+..+ ..+++|++|+++.|.+.+.....+. ..+++|+.|+++.|.++.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 3455555555555433222222 1356677777777766654333332 235667777777776653
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=9.3e-08 Score=96.67 Aligned_cols=144 Identities=19% Similarity=0.302 Sum_probs=86.4
Q ss_pred cccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEccccccccccChhhh--hCCCCCCEEEeecc--ccceecCCCC
Q 048402 99 DQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIYNNKLNGTLSEIHF--SNLTKLSWFRVGGN--KLTLEVRHDW 174 (677)
Q Consensus 99 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~l~~~~~--~~l~~L~~L~l~~n--~l~~~~~~~~ 174 (677)
..+..+++|+.|++++|.-. .++. +. +++|++|++..+.+...... .+ ..+++|+.|+|+.+ ...+. ..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~--~~~ 239 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE-DILGSDLPNLEKLVLYVGVEDYGFD--GDM 239 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH-HHHHSBCTTCCEEEEECBCGGGTCC--SCG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH-HHHHccCCCCcEEEEeccccccccc--hhH
Confidence 44556677777777766311 1222 33 67888888877776522221 23 26778888877532 11100 000
Q ss_pred CCCcCccEEEeecccCCCCCChhc--cCCCCCCEEEccCCCCCCccchHHHh--ccCCccEEECCCccCccc-----cCC
Q 048402 175 IPPFQLVALGFHNCYVGSRFPQWL--HSQKHLQYLNLLNSGMSDLFPIRFLK--SAFQLKFLDLGLNQFHGQ-----ITD 245 (677)
Q Consensus 175 ~~~~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~-----~~~ 245 (677)
. .+...+ ..+++|++|++.+|.+.+..+..++. .+++|++|+|+.|.+.+. ...
T Consensus 240 ~-----------------~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 240 N-----------------VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302 (362)
T ss_dssp G-----------------GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred H-----------------HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh
Confidence 0 000111 35789999999999887644444432 467899999999988763 223
Q ss_pred ccccccccEEEcccCCCCCC
Q 048402 246 LTKVTQLLFLSVHSNNMSGP 265 (677)
Q Consensus 246 ~~~~~~L~~L~l~~n~~~~~ 265 (677)
+..+++|+.|++++|.++..
T Consensus 303 L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHHHTTCSEEECCSBBCCHH
T ss_pred cccCCcceEEECCCCcCCHH
Confidence 34568899999999987643
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=6.2e-08 Score=88.26 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=38.8
Q ss_pred CccEEEcccCcCccc----cccccCCCCCCCEEECcCCccccC----CCcCCCCCCCCCEEEc--cccccccc----cCh
Q 048402 82 ELESLDLRSSSISGH----LTDQLGQFKNLDNLDLANNSIVGP----IPQSLGHLSNLRVLQI--YNNKLNGT----LSE 147 (677)
Q Consensus 82 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L--~~n~i~~~----l~~ 147 (677)
+|++|+|++|.+... +.+.+...+.|++|+|++|.|... +...+...++|++|++ ++|.+... +..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 444444444444321 222233334455555555554421 2233444455555555 45555421 111
Q ss_pred hhhhCCCCCCEEEeeccccc
Q 048402 148 IHFSNLTKLSWFRVGGNKLT 167 (677)
Q Consensus 148 ~~~~~l~~L~~L~l~~n~l~ 167 (677)
.+...+.|+.|++++|.+.
T Consensus 146 -~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 146 -MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp -HHHHCSSCCEEECCCSSHH
T ss_pred -HHHhCCCcCEEeccCCCCC
Confidence 3444456666666666554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=6.1e-08 Score=88.34 Aligned_cols=113 Identities=18% Similarity=0.166 Sum_probs=52.2
Q ss_pred CCccEEEccCC-cccccCChhHhhccCCCCCcCeEecCCCCCcccC----CcccccCCCCceecccCcccccc----CCc
Q 048402 271 SNLVYLDLSNN-SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEI----PDCWMSYQNLEILELSNNKFTGK----LPN 341 (677)
Q Consensus 271 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~ 341 (677)
+.|++|++++| .+.......++..+...++|++|++++|.+.... ...+...++|++|+|++|.|.+. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 34555555555 5544333444444455556666666666554321 22233344555555555555432 223
Q ss_pred CcCCCCCccEEEC--cCCccccc----CCccCcCCCCCCEEecCCCcc
Q 048402 342 SLGSLTSLIWLLL--GKNRLSGT----IPVSLKNCTALESLDVGENEF 383 (677)
Q Consensus 342 ~~~~l~~L~~L~l--~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l 383 (677)
.+...++|++|++ ++|.+... +...+...++|++|++++|.+
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3344444555555 44444322 112223334444555444444
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=4.5e-07 Score=86.70 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=31.1
Q ss_pred hhccccEEEcccCcccc--cCCcccCCCCCCcEEeccCCcceeecccccccCC--CCcEEECCCCcccccC
Q 048402 488 ILNLVKETDVSRNNLTK--SIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMR--SLESIDFSVNQLSGEI 554 (677)
Q Consensus 488 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~ 554 (677)
.++.|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. +.+..+. +|++|+|++|.+.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 34555555555555554 2233444555555555555555532 1222222 5555555555554433
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=1.1e-07 Score=90.94 Aligned_cols=77 Identities=23% Similarity=0.315 Sum_probs=55.2
Q ss_pred CccEEEcccCcCcc--ccccccCCCCCCCEEECcCCccccCCCcCCCCCC--CCCEEEccccccccccCh------hhhh
Q 048402 82 ELESLDLRSSSISG--HLTDQLGQFKNLDNLDLANNSIVGPIPQSLGHLS--NLRVLQIYNNKLNGTLSE------IHFS 151 (677)
Q Consensus 82 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~i~~~l~~------~~~~ 151 (677)
+|++|+|++|.+++ .++..+..+++|++|+|++|.+++. ..+..+. +|++|+|++|.+.+.+|. ..+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 78888888888876 3445666788888888888888754 3334333 888888888888765552 2467
Q ss_pred CCCCCCEEE
Q 048402 152 NLTKLSWFR 160 (677)
Q Consensus 152 ~l~~L~~L~ 160 (677)
.+++|+.||
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 888888876
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=1.9e-06 Score=76.11 Aligned_cols=85 Identities=11% Similarity=0.099 Sum_probs=68.5
Q ss_pred ccccEEEcccCcccccCCcccCCCCCCcEEeccCCc-ceeecccccccC----CCCcEEECCCCc-ccccCccccccCCC
Q 048402 490 NLVKETDVSRNNLTKSIPLEMTNLKATQSLNFSHNS-FTGRIPESIGAM----RSLESIDFSVNQ-LSGEIPQSMSNLMS 563 (677)
Q Consensus 490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 563 (677)
..|+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 358999999999887655667899999999999996 665433445554 479999999986 87655566888999
Q ss_pred CCEEEcccCcc
Q 048402 564 LNHLNLSNNKL 574 (677)
Q Consensus 564 L~~L~ls~N~l 574 (677)
|++|++++|+-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 99999999863
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=5.2e-06 Score=73.34 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=63.6
Q ss_pred CCCCCEEecCCCCCCCccCchhhcCCCCCCEEEccCCc-CCcccchhhhhc----cccCcCCccEEEcccCc-Ccccccc
Q 048402 26 LTSISRLDLSLNTGPEGRIPRSMASLCNLKSINLRGVH-LSQEISEILNIF----SGCVSIELESLDLRSSS-ISGHLTD 99 (677)
Q Consensus 26 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~~~~~~L~~L~L~~n~-l~~~~~~ 99 (677)
-..|++||++ ++.++..--..+..+++|++|+|++|. +++..-..+..+ + +|++|++++|. ++..--.
T Consensus 60 ~~~L~~LDLs-~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~-----~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 60 KYKIQAIDAT-DSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK-----SMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCEEEEEEE-SCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHH-----HCCEEEEESCTTCCHHHHH
T ss_pred CceEeEEeCc-CCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccC-----CCCEEEcCCCCcCCHHHHH
Confidence 3568999999 556665545667889999999999984 776555555542 3 69999999984 7765455
Q ss_pred ccCCCCCCCEEECcCCc
Q 048402 100 QLGQFKNLDNLDLANNS 116 (677)
Q Consensus 100 ~~~~l~~L~~L~L~~n~ 116 (677)
.+.++++|++|++++|.
T Consensus 134 ~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HGGGCTTCCEEEEESCT
T ss_pred HHhcCCCCCEEECCCCC
Confidence 67788999999999885
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.49 E-value=0.00011 Score=61.77 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=38.6
Q ss_pred EEeccCCcce-eecccccccCCCCcEEECCCCcccccCccccccCCCCCEEEcccCcccccCC
Q 048402 518 SLNFSHNSFT-GRIPESIGAMRSLESIDFSVNQLSGEIPQSMSNLMSLNHLNLSNNKLTGKIP 579 (677)
Q Consensus 518 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 579 (677)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.++.|..+++|+.|+|++|++.|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4555555554 23443333 357777777777776656667777778888888888776553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=7.5e-05 Score=67.24 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=59.0
Q ss_pred CccEEEccCC-cccccCChhHhhccCCCCCcCeEecCCCCCcccCCc----ccccCCCCceecccCccccccC----CcC
Q 048402 272 NLVYLDLSNN-SFSGSVSHYLCYRINEPKSLIGLKLKDNSLQGEIPD----CWMSYQNLEILELSNNKFTGKL----PNS 342 (677)
Q Consensus 272 ~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~ 342 (677)
.|+.|++++| .+.......++..+...+.|+.|++++|.+...... .+..-+.|++|+|++|.|.+.. ..+
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4566666654 555444445666666667777777777776643222 2334456777777777666322 223
Q ss_pred cCCCCCccEEECcCCc---ccc----cCCccCcCCCCCCEEecCCCc
Q 048402 343 LGSLTSLIWLLLGKNR---LSG----TIPVSLKNCTALESLDVGENE 382 (677)
Q Consensus 343 ~~~l~~L~~L~l~~n~---~~~----~~~~~~~~l~~L~~L~l~~n~ 382 (677)
+..-+.|+.|+|++|. +.. .+...+..-++|+.|+++.|.
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3444556666665432 221 112233444556666665544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.26 E-value=0.00024 Score=63.97 Aligned_cols=120 Identities=9% Similarity=0.069 Sum_probs=83.1
Q ss_pred cccCCCCCCEEecCCCCCCCc----cCchhhcCCCCCCEEEccCCcCCcccchhhhhccccCcCCccEEEcccCcCccc-
Q 048402 22 ALGNLTSISRLDLSLNTGPEG----RIPRSMASLCNLKSINLRGVHLSQEISEILNIFSGCVSIELESLDLRSSSISGH- 96 (677)
Q Consensus 22 ~~~~l~~L~~L~Ls~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~L~~L~L~~n~l~~~- 96 (677)
.+.+-+.|++|+|++++.+.. .+..++..-+.|+.|+|++|.+.+.....+...-.... .|++|+|++|.|...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecCCCcCCHHH
Confidence 345678899999983335542 34567777889999999999998655444432211111 799999999999754
Q ss_pred ---cccccCCCCCCCEEECcCCc---ccc----CCCcCCCCCCCCCEEEccccccc
Q 048402 97 ---LTDQLGQFKNLDNLDLANNS---IVG----PIPQSLGHLSNLRVLQIYNNKLN 142 (677)
Q Consensus 97 ---~~~~~~~l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~L~L~~n~i~ 142 (677)
+.+++..-+.|++|+|++|. +.. .+.+.+..-+.|+.|+++.|.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 45566777789999998753 331 13344566789999999887653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.65 E-value=0.0028 Score=53.19 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=47.5
Q ss_pred cEEEcccCccc-ccCCcccCCCCCCcEEeccCCcceeecccccccCCCCcEEECCCCccc
Q 048402 493 KETDVSRNNLT-KSIPLEMTNLKATQSLNFSHNSFTGRIPESIGAMRSLESIDFSVNQLS 551 (677)
Q Consensus 493 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 551 (677)
..++.++++++ ..+|..+. .+|+.|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 58899999997 34564433 46999999999999777778999999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.35 E-value=12 Score=28.93 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=28.5
Q ss_pred CcccCCcccccCCCCceecccCccccccCCcCcCCCCCccEEECcCC
Q 048402 311 LQGEIPDCWMSYQNLEILELSNNKFTGKLPNSLGSLTSLIWLLLGKN 357 (677)
Q Consensus 311 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 357 (677)
++.+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34445566777777777777653 33355566777777777776553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.25 E-value=13 Score=28.75 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=16.9
Q ss_pred ccccCCCCCCCEEECcCCccccCCCcCCCCCCCCCEEEcc
Q 048402 98 TDQLGQFKNLDNLDLANNSIVGPIPQSLGHLSNLRVLQIY 137 (677)
Q Consensus 98 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 137 (677)
..+|.+|.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344444444444444432 222333444444444444443
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=52.60 E-value=1.7 Score=27.65 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=10.2
Q ss_pred eehhHHHHHHHHHhhheeeeccch
Q 048402 632 SIALGFVVGFGCFIGPLIFNRRWR 655 (677)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~ 655 (677)
+.++|+++.+++.+++++|.+|++
T Consensus 16 ~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 16 SAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhheehhh
Confidence 344443333333344444555444
No 168
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=52.49 E-value=2.3 Score=27.12 Aligned_cols=7 Identities=43% Similarity=0.525 Sum_probs=2.9
Q ss_pred eeeeccc
Q 048402 648 LIFNRRW 654 (677)
Q Consensus 648 ~~~~~~~ 654 (677)
++|.+|+
T Consensus 32 ~~~~RRr 38 (44)
T 2ks1_B 32 GLFMRRR 38 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3444443
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=48.53 E-value=2.9 Score=25.71 Aligned_cols=17 Identities=24% Similarity=0.686 Sum_probs=7.9
Q ss_pred eeeehhHHHHHHHHHhh
Q 048402 630 YVSIALGFVVGFGCFIG 646 (677)
Q Consensus 630 ~~~~~~~~~~~~~~~~~ 646 (677)
+.+++++.++++.++++
T Consensus 13 IAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHH
Confidence 34555555544443333
No 170
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=43.80 E-value=3.5 Score=26.24 Aligned_cols=8 Identities=25% Similarity=0.439 Sum_probs=3.3
Q ss_pred eeeeccch
Q 048402 648 LIFNRRWR 655 (677)
Q Consensus 648 ~~~~~~~~ 655 (677)
++|.+|++
T Consensus 31 ~~~~RRRr 38 (44)
T 2l2t_A 31 AVYVRRKS 38 (44)
T ss_dssp HHHHHTTC
T ss_pred HHHhhhhh
Confidence 34444433
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=37.17 E-value=8.8 Score=22.41 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=11.7
Q ss_pred ehhHHHHHHHHHhhheeeeccch
Q 048402 633 IALGFVVGFGCFIGPLIFNRRWR 655 (677)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~ 655 (677)
+++|.++++.+..+.++|++.+|
T Consensus 12 ~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEcccc
Confidence 34455555555555556655443
No 172
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=23.23 E-value=18 Score=24.95 Aligned_cols=18 Identities=56% Similarity=0.696 Sum_probs=10.7
Q ss_pred ehhHHHHHHHHHhhheee
Q 048402 633 IALGFVVGFGCFIGPLIF 650 (677)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~ 650 (677)
+++|.++++++++++.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 466666666665555555
Done!