Your job contains 1 sequence.
>048403
MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR
LTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRN
YYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD
QGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKL
QTPMEFDNNKGIESSRNLFNGQNGVVENRNTTSQVQEEAIPRFPGNWMHKLSEKWTHCVA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048403
(300 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2008291 - symbol:AT1G51310 "AT1G51310" species... 562 2.3e-72 2
UNIPROTKB|O75648 - symbol:TRMU "Mitochondrial tRNA-specif... 158 1.4e-13 3
UNIPROTKB|F1SM74 - symbol:TRMU "Uncharacterized protein" ... 155 2.8e-13 3
UNIPROTKB|E2QS09 - symbol:TRMU "Uncharacterized protein" ... 153 7.7e-13 3
UNIPROTKB|F6V9U0 - symbol:TRMU "Uncharacterized protein" ... 153 8.1e-13 3
RGD|1311229 - symbol:Trmu "tRNA 5-methylaminomethyl-2-thi... 149 2.0e-12 3
UNIPROTKB|F1N2P9 - symbol:TRMU "Uncharacterized protein" ... 149 6.1e-12 3
UNIPROTKB|Q5ZKW0 - symbol:TRMU "Mitochondrial tRNA-specif... 148 1.4e-11 3
ZFIN|ZDB-GENE-050522-540 - symbol:trmu "tRNA 5-methylamin... 146 3.7e-11 3
TIGR_CMR|BA_4625 - symbol:BA_4625 "tRNA (5-methylaminomet... 114 1.3e-10 2
TIGR_CMR|CHY_2197 - symbol:CHY_2197 "tRNA (5-methylaminom... 118 3.6e-10 2
MGI|MGI:1919276 - symbol:Trmu "tRNA 5-methylaminomethyl-2... 150 1.4e-08 2
TIGR_CMR|DET_0779 - symbol:DET_0779 "tRNA (5-methylaminom... 109 1.6e-08 2
TIGR_CMR|CBU_1147 - symbol:CBU_1147 "tRNA (5-methylaminom... 109 5.3e-08 2
UNIPROTKB|P25745 - symbol:mnmA "tRNA-specific 2-thiouridy... 112 6.6e-08 2
UNIPROTKB|H9KZX8 - symbol:H9KZX8 "Uncharacterized protein... 148 9.4e-08 1
UNIPROTKB|Q9KSX8 - symbol:mnmA "tRNA-specific 2-thiouridy... 110 1.8e-07 2
TIGR_CMR|VC_1128 - symbol:VC_1128 "tRNA (5-methylaminomet... 110 1.8e-07 2
TIGR_CMR|CPS_2900 - symbol:CPS_2900 "tRNA (5-methylaminom... 104 1.9e-06 2
TIGR_CMR|SO_2633 - symbol:SO_2633 "tRNA (5-methylaminomet... 107 2.1e-06 2
TIGR_CMR|GSU_2569 - symbol:GSU_2569 "tRNA (5-methylaminom... 92 7.8e-06 2
FB|FBgn0040337 - symbol:CG3021 species:7227 "Drosophila m... 91 9.5e-06 2
TIGR_CMR|ECH_0872 - symbol:ECH_0872 "tRNA (5-methylaminom... 89 2.8e-05 2
DICTYBASE|DDB_G0288979 - symbol:trmu "tRNA (5-methylamino... 99 6.1e-05 2
CGD|CAL0003878 - symbol:orf19.7245 species:5476 "Candida ... 101 6.3e-05 2
>TAIR|locus:2008291 [details] [associations]
symbol:AT1G51310 "AT1G51310" species:3702 "Arabidopsis
thaliana" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=ISS] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0016740
"transferase activity" evidence=IEA] HAMAP:MF_00144
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 EMBL:CP002684
GO:GO:0005737 GO:GO:0008033 GO:GO:0008168 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 KO:K00566 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 OMA:QPGNIET IPI:IPI00548497
RefSeq:NP_175542.2 UniGene:At.37843 ProteinModelPortal:F4I824
SMR:F4I824 PRIDE:F4I824 EnsemblPlants:AT1G51310.1 GeneID:841554
KEGG:ath:AT1G51310 Uniprot:F4I824
Length = 497
Score = 562 (202.9 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 120/203 (59%), Positives = 145/203 (71%)
Query: 65 MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSF 124
MEGIILEAE+GDFL HRGFWFYTIGQ Q L L + YVVEKD +NN+VFVSRNYYS
Sbjct: 300 MEGIILEAESGDFLGNHRGFWFYTIGQRQGLRLPGGPW-YVVEKDTKNNVVFVSRNYYSI 358
Query: 125 DKKRHLFHAGSLKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCEDGGEDIAVVQLSE 178
DK+R +F GSL+ SG P K+ +L H FY+CS +E DG D+AVV L E
Sbjct: 359 DKRRRIFRVGSLRWNSGKPSGKVRELRCKVRHGPGFYSCSFEMEG--DG--DVAVVHLDE 414
Query: 179 DDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIK- 237
DDQGLAAGQFAAFY+G C+GSGVILE+WDDQ FPVC KAL++A +EDK+KLGKPVKI
Sbjct: 415 DDQGLAAGQFAAFYEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKIMT 474
Query: 238 VKLQTPMEFDNNKGIESSRNLFN 260
+ + +E D + + + L N
Sbjct: 475 MPTMSSVEADTGEA-SAEQKLVN 496
Score = 188 (71.2 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
Identities = 41/63 (65%), Positives = 44/63 (69%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
MDAIS ME+DYV SGHYA VVH AD D SV KDQTYFLSHLSQ QL+RL+
Sbjct: 191 MDAISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLL 250
Query: 53 FHL 55
F L
Sbjct: 251 FPL 253
>UNIPROTKB|O75648 [details] [associations]
symbol:TRMU "Mitochondrial tRNA-specific 2-thiouridylase 1"
species:9606 "Homo sapiens" [GO:0016783 "sulfurtransferase
activity" evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=NAS] [GO:0006399 "tRNA metabolic process" evidence=NAS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0008033 "tRNA
processing" evidence=NAS] InterPro:IPR004506 InterPro:IPR023382
Pfam:PF03054 GO:GO:0005739 GO:GO:0005524 EMBL:CH471138
GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729 EMBL:AL031588
Orphanet:90641 GO:GO:0016783 MIM:580000 UniGene:Hs.439524
eggNOG:COG0482 KO:K00566 OMA:HASEKKH Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 GO:GO:0004808 CTD:55687
HOVERGEN:HBG108157 EMBL:AY062123 EMBL:AF448221 EMBL:AB178028
EMBL:CR456445 EMBL:AK001002 EMBL:AK290712 EMBL:BC027991
EMBL:BC080631 IPI:IPI00026555 IPI:IPI00514782 IPI:IPI00807637
IPI:IPI00903061 IPI:IPI00909385 RefSeq:NP_060476.2
ProteinModelPortal:O75648 SMR:O75648 IntAct:O75648 STRING:O75648
PhosphoSite:O75648 PaxDb:O75648 PRIDE:O75648 DNASU:55687
Ensembl:ENST00000290846 Ensembl:ENST00000381019
Ensembl:ENST00000457572 GeneID:55687 KEGG:hsa:55687 UCSC:uc003bhp.3
UCSC:uc003bhq.3 UCSC:uc003bhs.3 UCSC:uc003bhv.3
GeneCards:GC22P046726 HGNC:HGNC:25481 HPA:HPA035273 MIM:610230
MIM:613070 neXtProt:NX_O75648 Orphanet:217371 Orphanet:254864
PharmGKB:PA142670701 InParanoid:O75648 PhylomeDB:O75648
BRENDA:2.1.1.61 ChiTaRS:TRMU GenomeRNAi:55687 NextBio:60489
ArrayExpress:O75648 Bgee:O75648 CleanEx:HS_TRMT1 CleanEx:HS_TRMU
Genevestigator:O75648 GermOnline:ENSG00000100416 Uniprot:O75648
Length = 421
Score = 158 (60.7 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 51/152 (33%), Positives = 71/152 (46%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 239 PRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFVAPRTDH 297
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 298 PALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 355
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
VQ + LA GQFA FY+G CLGSG IL
Sbjct: 356 AVQAV---RALATGQFAVFYKGDECLGSGKIL 384
Score = 73 (30.8 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 32 SVKDQTYFLSHLSQAQLRRLIFHL 55
S KDQT+FLS +SQ LRR IF L
Sbjct: 169 SFKDQTFFLSQVSQDALRRTIFPL 192
Score = 43 (20.2 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 3 AISSMEFDYVASGHYA 18
A+ ++ D +A+GHYA
Sbjct: 114 AVDNLGADAIATGHYA 129
>UNIPROTKB|F1SM74 [details] [associations]
symbol:TRMU "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016783
"sulfurtransferase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR004506 InterPro:IPR023382
Pfam:PF03054 GO:GO:0005739 GO:GO:0008033 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 Gene3D:2.30.30.280
PANTHER:PTHR11933 GeneTree:ENSGT00390000014323 OMA:CHFRFIH
EMBL:FP016092 Ensembl:ENSSSCT00000000008 Uniprot:F1SM74
Length = 394
Score = 155 (59.6 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 51/152 (33%), Positives = 72/152 (47%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ ++G L + YVVEKD + V V+
Sbjct: 212 PRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPW-YVVEKDSASGDVLVAPRTDH 270
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L G + ++ PP +K+ H F + C LT+ +DG +
Sbjct: 271 PALYRDLLRTGRVHWIAEEPPAALVRDKMMACHFRFRHQMALVPCVLTLN--QDGTVWVT 328
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
V E + LA GQFA FY+G CLGSG IL
Sbjct: 329 AV---EAVRALALGQFAVFYKGDECLGSGKIL 357
Score = 71 (30.1 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 32 SVKDQTYFLSHLSQAQLRRLIFHL 55
S KDQT+FLS +SQ LRR +F L
Sbjct: 142 SFKDQTFFLSQVSQDALRRTLFPL 165
Score = 44 (20.5 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 3 AISSMEFDYVASGHYA 18
A+ ++ D VA+GHYA
Sbjct: 87 AVDNLGADAVATGHYA 102
>UNIPROTKB|E2QS09 [details] [associations]
symbol:TRMU "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016783 "sulfurtransferase activity" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] HAMAP:MF_00144 InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 GO:GO:0005739 GO:GO:0008033
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
ProteinModelPortal:E2QS09 Ensembl:ENSCAFT00000001213 Uniprot:E2QS09
Length = 421
Score = 153 (58.9 bits), Expect = 7.7e-13, Sum P(3) = 7.7e-13
Identities = 50/152 (32%), Positives = 72/152 (47%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ ++G L + YVVEKD VFV+
Sbjct: 239 PRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPW-YVVEKDGTKGDVFVAPRTDH 297
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 298 PALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 355
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
V+ + LA GQFA FY+G CLGSG IL
Sbjct: 356 AVKAV---RALALGQFAVFYKGDECLGSGKIL 384
Score = 71 (30.1 bits), Expect = 7.7e-13, Sum P(3) = 7.7e-13
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 32 SVKDQTYFLSHLSQAQLRRLIFHL 55
S KDQT+FLS +SQ LRR +F L
Sbjct: 169 SFKDQTFFLSQVSQDALRRTLFPL 192
Score = 44 (20.5 bits), Expect = 7.7e-13, Sum P(3) = 7.7e-13
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 3 AISSMEFDYVASGHYA 18
A+ ++ D VA+GHYA
Sbjct: 114 AVDNLGADAVATGHYA 129
>UNIPROTKB|F6V9U0 [details] [associations]
symbol:TRMU "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016783 "sulfurtransferase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] HAMAP:MF_00144
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 GO:GO:0005737
GO:GO:0008033 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
KO:K00566 OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933
TIGRFAMs:TIGR00420 GeneTree:ENSGT00390000014323 CTD:55687
Ensembl:ENSCAFT00000001213 EMBL:AAEX03007216 RefSeq:XP_538325.2
GeneID:481204 KEGG:cfa:481204 Uniprot:F6V9U0
Length = 425
Score = 153 (58.9 bits), Expect = 8.1e-13, Sum P(3) = 8.1e-13
Identities = 50/152 (32%), Positives = 72/152 (47%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ ++G L + YVVEKD VFV+
Sbjct: 239 PRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPW-YVVEKDGTKGDVFVAPRTDH 297
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 298 PALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 355
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
V+ + LA GQFA FY+G CLGSG IL
Sbjct: 356 AVKAV---RALALGQFAVFYKGDECLGSGKIL 384
Score = 71 (30.1 bits), Expect = 8.1e-13, Sum P(3) = 8.1e-13
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 32 SVKDQTYFLSHLSQAQLRRLIFHL 55
S KDQT+FLS +SQ LRR +F L
Sbjct: 169 SFKDQTFFLSQVSQDALRRTLFPL 192
Score = 44 (20.5 bits), Expect = 8.1e-13, Sum P(3) = 8.1e-13
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 3 AISSMEFDYVASGHYA 18
A+ ++ D VA+GHYA
Sbjct: 114 AVDNLGADAVATGHYA 129
>RGD|1311229 [details] [associations]
symbol:Trmu "tRNA 5-methylaminomethyl-2-thiouridylate
methyltransferase" species:10116 "Rattus norvegicus" [GO:0000049
"tRNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;ISO] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0016783 "sulfurtransferase activity"
evidence=IEA] InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
RGD:1311229 GO:GO:0005739 GO:GO:0005524 GO:GO:0008033 GO:GO:0000049
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482
Gene3D:2.30.30.280 PANTHER:PTHR11933 HOGENOM:HOG000218046
GeneTree:ENSGT00390000014323 HOVERGEN:HBG108157 OrthoDB:EOG4P2Q2D
EMBL:BC161991 IPI:IPI00366450 UniGene:Rn.40588
ProteinModelPortal:B1WC37 STRING:B1WC37 PRIDE:B1WC37
Ensembl:ENSRNOT00000065283 ArrayExpress:B1WC37
Genevestigator:B1WC37 Uniprot:B1WC37
Length = 441
Score = 149 (57.5 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 49/152 (32%), Positives = 71/152 (46%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ ++ L + YVVEKD V V+
Sbjct: 263 PRPGKFISIEDNRVLGTHKGWFLYTLGQRAKISGLSEPW-YVVEKDGTKGDVLVAPRVDH 321
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 322 PALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 379
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
V+ +GLA GQFA FY+G CLGSG IL
Sbjct: 380 AVKAV---RGLALGQFAVFYKGEECLGSGKIL 408
Score = 73 (30.8 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 32 SVKDQTYFLSHLSQAQLRRLIFHL 55
S KDQT+FLS +SQ LRR IF L
Sbjct: 169 SFKDQTFFLSQVSQDALRRTIFPL 192
Score = 44 (20.5 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 3 AISSMEFDYVASGHYA 18
A+ ++ D VA+GHYA
Sbjct: 114 AVDNLGADAVATGHYA 129
>UNIPROTKB|F1N2P9 [details] [associations]
symbol:TRMU "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016783
"sulfurtransferase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] HAMAP:MF_00144 InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 GO:GO:0005739 GO:GO:0008033
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 KO:K00566
OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933
GeneTree:ENSGT00390000014323 CTD:55687 EMBL:DAAA02014976
IPI:IPI00845174 RefSeq:NP_001156660.1 UniGene:Bt.9055
Ensembl:ENSBTAT00000007346 GeneID:616451 KEGG:bta:616451
NextBio:20900138 Uniprot:F1N2P9
Length = 417
Score = 149 (57.5 bits), Expect = 6.1e-12, Sum P(3) = 6.1e-12
Identities = 49/152 (32%), Positives = 71/152 (46%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ +G L + YVV+KD V V+
Sbjct: 239 PRPGRFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVDKDGAKGDVLVAPRTDH 297
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L G + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 298 PALYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 355
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
V+ + LA GQFA FY+G CLGSG IL
Sbjct: 356 AVKAV---RALAPGQFAVFYKGDECLGSGKIL 384
Score = 67 (28.6 bits), Expect = 6.1e-12, Sum P(3) = 6.1e-12
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 32 SVKDQTYFLSHLSQAQLRRLIFHL 55
S KDQT+FLS + Q LRR +F L
Sbjct: 169 SFKDQTFFLSQVPQEALRRTLFPL 192
Score = 44 (20.5 bits), Expect = 6.1e-12, Sum P(3) = 6.1e-12
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 3 AISSMEFDYVASGHYA 18
A+ ++ D VA+GHYA
Sbjct: 114 AVDNLGADAVATGHYA 129
>UNIPROTKB|Q5ZKW0 [details] [associations]
symbol:TRMU "Mitochondrial tRNA-specific 2-thiouridylase 1"
species:9031 "Gallus gallus" [GO:0016783 "sulfurtransferase
activity" evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 GO:GO:0005739
GO:GO:0005524 GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482 KO:K00566
OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933
HOGENOM:HOG000218046 GeneTree:ENSGT00390000014323 EMBL:AJ719974
IPI:IPI00575295 RefSeq:NP_001026522.1 UniGene:Gga.48137
ProteinModelPortal:Q5ZKW0 STRING:Q5ZKW0 Ensembl:ENSGALT00000006694
GeneID:425909 KEGG:gga:425909 CTD:55687 HOVERGEN:HBG108157
InParanoid:Q5ZKW0 OrthoDB:EOG4P2Q2D NextBio:20827708 Uniprot:Q5ZKW0
Length = 424
Score = 148 (57.2 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 46/152 (30%), Positives = 73/152 (48%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E + H+G++ YTIGQ L L + +VV+KD+ +FV+ +
Sbjct: 248 PQPGNFVSIEDKKVMGTHKGWFLYTIGQRARLAGLQGAW-FVVDKDVSTGDIFVAPSTDH 306
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 307 PALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLN--QDGSVWVT 364
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+V+ + + L GQFA FY+G CLGSG IL
Sbjct: 365 LVKPA---RALTPGQFAVFYKGDECLGSGKIL 393
Score = 68 (29.0 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 34 KDQTYFLSHLSQAQLRRLIFHL 55
KDQT+FLS +SQ LR+ IF L
Sbjct: 172 KDQTFFLSQISQDALRKTIFPL 193
Score = 41 (19.5 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 3 AISSMEFDYVASGHYA 18
A+ ++ D +A+GHYA
Sbjct: 115 AMDNLGADAIATGHYA 130
>ZFIN|ZDB-GENE-050522-540 [details] [associations]
symbol:trmu "tRNA
5-methylaminomethyl-2-thiouridylate methyltransferase" species:7955
"Danio rerio" [GO:0016783 "sulfurtransferase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 ZFIN:ZDB-GENE-050522-540
GO:GO:0005739 GO:GO:0005524 GO:GO:0008033 GO:GO:0000049
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482
KO:K00566 Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 CTD:55687 HOVERGEN:HBG108157 OrthoDB:EOG4P2Q2D
EMBL:BC095308 IPI:IPI00502534 RefSeq:NP_001018435.1
UniGene:Dr.86660 ProteinModelPortal:Q503J2 GeneID:553625
KEGG:dre:553625 InParanoid:Q503J2 NextBio:20880362 Uniprot:Q503J2
Length = 416
Score = 146 (56.5 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 45/152 (29%), Positives = 72/152 (47%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E G + KH+G++ T+GQ +G + +VV+KD+ VFV + +
Sbjct: 239 PRPGNFVSIEDGQIMGKHKGWFTLTLGQRARIGGRADAW-FVVDKDVTTADVFVCPSTFH 297
Query: 124 FDKKRHLFHAGSLKLLSGLPPEKI--SQL---HSVFYN------CSLTIEHCEDGGEDIA 172
R ++ PP ++ +Q+ H F N C++T+ DG
Sbjct: 298 PALFRDTLQTDRFHWIAEEPPAELVHTQMMDCHFCFNNRMPLTPCTVTLNL--DGS---V 352
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
V + E +G+A GQFA Y+G CLGSG I+
Sbjct: 353 WVMVKEPMRGMATGQFAVLYKGHECLGSGKII 384
Score = 65 (27.9 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 33 VKDQTYFLSHLSQAQLRRLIFHL 55
+KDQT+FLS +SQ LR +F L
Sbjct: 170 LKDQTFFLSQISQDALRHTLFPL 192
Score = 42 (19.8 bits), Expect = 3.7e-11, Sum P(3) = 3.7e-11
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 3 AISSMEFDYVASGHYA 18
A++++ D +A+GHYA
Sbjct: 114 AVNTLGADAMATGHYA 129
>TIGR_CMR|BA_4625 [details] [associations]
symbol:BA_4625 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482
KO:K00566 ProtClustDB:PRK00143 Gene3D:2.30.30.280 PANTHER:PTHR11933
TIGRFAMs:TIGR00420 RefSeq:NP_846843.1 RefSeq:YP_021273.1
RefSeq:YP_030539.1 ProteinModelPortal:Q81JE5 SMR:Q81JE5
IntAct:Q81JE5 DNASU:1085347 EnsemblBacteria:EBBACT00000012454
EnsemblBacteria:EBBACT00000016216 EnsemblBacteria:EBBACT00000020864
GeneID:1085347 GeneID:2815268 GeneID:2848709 KEGG:ban:BA_4625
KEGG:bar:GBAA_4625 KEGG:bat:BAS4291 HOGENOM:HOG000218046
OMA:QPGNIET BioCyc:BANT260799:GJAJ-4347-MONOMER
BioCyc:BANT261594:GJ7F-4496-MONOMER Uniprot:Q81JE5
Length = 371
Score = 114 (45.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL 55
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPL 171
Score = 103 (41.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 36/150 (24%), Positives = 70/150 (46%)
Query: 63 IPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNY 121
+P + +++ +G+ KH G +YTIGQ LG+ + V K+++ NI++V + +
Sbjct: 215 LPAQPGVMQTLSGEVKGKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGF 274
Query: 122 YSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVF-Y---NCSLTIEHCEDGGEDIAVVQLS 177
++ A ++ +S EK + + F Y + +T++ + E+ +
Sbjct: 275 HNELLYGDEVIATNVGWVSNEAKEKEFKCTAKFRYRQEDNKVTVQIVD---ENTVRILCD 331
Query: 178 EDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207
E + + GQ FY G CLG I E +
Sbjct: 332 EPIRAITPGQAVVFYDGDECLGGATIDEVY 361
>TIGR_CMR|CHY_2197 [details] [associations]
symbol:CHY_2197 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566
OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
RefSeq:YP_361010.1 ProteinModelPortal:Q3AA24 STRING:Q3AA24
GeneID:3728689 KEGG:chy:CHY_2197 PATRIC:21277461
BioCyc:CHYD246194:GJCN-2196-MONOMER Uniprot:Q3AA24
Length = 365
Score = 118 (46.6 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 41/130 (31%), Positives = 55/130 (42%)
Query: 75 GDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAG 134
G L +H+G+ +YTIGQ + LGL YVV+ E N V + F L A
Sbjct: 235 GRVLGQHQGYPYYTIGQRKGLGLALGKPYYVVDIRPETNEVVIGEASEIFSPG--LI-AS 291
Query: 135 SLKLL-SGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
L L PE+ + YN E G+D V +E + + GQ FY+
Sbjct: 292 DLNFLWFDEIPERFEAQAQIRYNAKPQPAVVERIGKDKVKVVFNEPQRAITPGQAVVFYR 351
Query: 194 GRRCLGSGVI 203
G LG G I
Sbjct: 352 GDELLGGGTI 361
Score = 94 (38.1 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 6 SMEFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60
S+ DY+A+GHYA VV+ K KDQTY L +L+Q LRRL+ L Y +
Sbjct: 123 SLGMDYMATGHYARVVYKDDIGKYGLFRGVDRKKDQTYVLYNLTQDMLRRLLLPLGEYTK 182
>MGI|MGI:1919276 [details] [associations]
symbol:Trmu "tRNA 5-methylaminomethyl-2-thiouridylate
methyltransferase" species:10090 "Mus musculus" [GO:0000049 "tRNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016783
"sulfurtransferase activity" evidence=IEA] InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 MGI:MGI:1919276 GO:GO:0005739
GO:GO:0005524 GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482 KO:K00566
OMA:HASEKKH Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 GeneTree:ENSGT00390000014323 CTD:55687
HOVERGEN:HBG108157 OrthoDB:EOG4P2Q2D BRENDA:2.1.1.61 EMBL:AY349617
EMBL:AK005541 EMBL:AK043532 EMBL:AK044059 EMBL:BC061026
IPI:IPI00119022 RefSeq:NP_082339.1 UniGene:Mm.158211
ProteinModelPortal:Q9DAT5 SMR:Q9DAT5 STRING:Q9DAT5
PhosphoSite:Q9DAT5 PaxDb:Q9DAT5 PRIDE:Q9DAT5
Ensembl:ENSMUST00000023019 GeneID:72026 KEGG:mmu:72026
UCSC:uc007xdr.1 InParanoid:Q9DAT5 NextBio:335254 Bgee:Q9DAT5
Genevestigator:Q9DAT5 GermOnline:ENSMUSG00000022386 Uniprot:Q9DAT5
Length = 417
Score = 150 (57.9 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 52/167 (31%), Positives = 78/167 (46%)
Query: 49 RRLIFHLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEK 108
+R + H +L + P G + E L H+G++ YT+GQ ++ L + YVVEK
Sbjct: 226 KRNLEHFLL--QYLQPRPGKFVSIEDNTVLGTHKGWFLYTLGQRAKISGLREPW-YVVEK 282
Query: 109 DIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------C 157
D V V+ R L + ++ PP +K+ + H F + C
Sbjct: 283 DGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPC 342
Query: 158 SLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
LT+ +DG + V+ +GLA GQFA FY+G CLGSG IL
Sbjct: 343 VLTLN--QDGTVWVTAVKAV---RGLALGQFAVFYKGEECLGSGKIL 384
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 3 AISSMEFDYVASGHYA 18
A+ ++ D VA+GHYA
Sbjct: 114 AVDNLGADAVATGHYA 129
>TIGR_CMR|DET_0779 [details] [associations]
symbol:DET_0779 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566
OMA:HASEKKH ProtClustDB:PRK00143 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 RefSeq:YP_181511.1
ProteinModelPortal:Q3Z8D8 STRING:Q3Z8D8 PRIDE:Q3Z8D8 GeneID:3229892
KEGG:det:DET0779 PATRIC:21608619 BioCyc:DETH243164:GJNF-780-MONOMER
Uniprot:Q3Z8D8
Length = 357
Score = 109 (43.4 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 38/143 (26%), Positives = 64/143 (44%)
Query: 67 GIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDK 126
G IL+ +TG L +H+G YTIGQ Q LGL +V + + E N + V+ + +
Sbjct: 217 GKILD-KTGKILGEHQGLPLYTIGQRQGLGLASNEKLFVSDMNPEANTIMVASHDQLYTS 275
Query: 127 KRHLFHAGSLKLLSGLPPEKISQLHSVFYNCS-LTIEHCEDGGEDIAVVQLSEDDQGLAA 185
+ + + + S +P + + V Y + ++ G D +++L+
Sbjct: 276 R--ILLSNFIWRESRIPLDTPGMIVKVRYKAAPAEVKKISQTG-DFYLLELASPVWAATP 332
Query: 186 GQFAAFYQGRRCLGSGVILEAWD 208
GQ A Y G LG G+I D
Sbjct: 333 GQAAVIYLGDMVLGGGIIEHGGD 355
Score = 88 (36.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 1 MDAISSMEFDYVASGHYANVVHS-SADH--KDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
++ I Y+A+GHYA V+ + H K KDQ+YFL L L RLIF L
Sbjct: 112 LEKIPDFNAGYLATGHYARVLSDENGTHLLKGADEKKDQSYFLYTLPPESLSRLIFPL 169
>TIGR_CMR|CBU_1147 [details] [associations]
symbol:CBU_1147 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:227377 "Coxiella burnetii RSA 493" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 KO:K00566 ProtClustDB:PRK00143
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 OMA:QPGNIET RefSeq:NP_820145.2
ProteinModelPortal:Q820W2 SMR:Q820W2 PRIDE:Q820W2 GeneID:1209049
KEGG:cbu:CBU_1147 PATRIC:17931025
BioCyc:CBUR227377:GJ7S-1137-MONOMER Uniprot:Q820W2
Length = 362
Score = 109 (43.4 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 37/142 (26%), Positives = 56/142 (39%)
Query: 70 LEAETGDFLEKHRGFWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNY-YS 123
+E G + KH G FYT+GQ + L + YVV+KD++ N++ V + Y +
Sbjct: 222 IETSEGKIIGKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHP 281
Query: 124 FDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDG--GEDIAVVQLSEDDQ 181
+ L +L + P C + C D VQ +
Sbjct: 282 LLYSQELT-CTNLHWIRDTEPS-FPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQR 339
Query: 182 GLAAGQFAAFYQGRRCLGSGVI 203
+ GQ FY G CLG G+I
Sbjct: 340 AITRGQSVVFYLGNECLGGGII 361
Score = 83 (34.3 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D + ++A+GHYA + + + ++ K S KDQ+YFL L+Q QL +F +
Sbjct: 114 LDHAKKLGATHLATGHYACIQNENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIGG 173
Query: 58 YPR 60
Y +
Sbjct: 174 YQK 176
>UNIPROTKB|P25745 [details] [associations]
symbol:mnmA "tRNA-specific 2-thiouridylase" species:83333
"Escherichia coli K-12" [GO:0002143 "tRNA wobble position uridine
thiolation" evidence=IMP;IDA] [GO:0016783 "sulfurtransferase
activity" evidence=IEA;IDA] [GO:0000049 "tRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] HAMAP:MF_00144
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0000049 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 GO:GO:0002143 EMBL:X59307
EMBL:M74924 eggNOG:COG0482 KO:K00566 ProtClustDB:PRK00143
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 OMA:QPGNIET PIR:B64858 RefSeq:NP_415651.4
RefSeq:YP_489401.1 PDB:2DER PDB:2DET PDB:2DEU PDBsum:2DER
PDBsum:2DET PDBsum:2DEU ProteinModelPortal:P25745 SMR:P25745
DIP:DIP-11035N IntAct:P25745 PaxDb:P25745 PRIDE:P25745
EnsemblBacteria:EBESCT00000001280 EnsemblBacteria:EBESCT00000014469
GeneID:12934135 GeneID:945690 KEGG:ecj:Y75_p1103 KEGG:eco:b1133
PATRIC:32117515 EchoBASE:EB1320 EcoGene:EG11344
BioCyc:EcoCyc:EG11344-MONOMER BioCyc:ECOL316407:JW1119-MONOMER
BioCyc:MetaCyc:EG11344-MONOMER EvolutionaryTrace:P25745
Genevestigator:P25745 Uniprot:P25745
Length = 368
Score = 112 (44.5 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 42/153 (27%), Positives = 72/153 (47%)
Query: 63 IPME-GIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVF 116
+P + G I+ + GD + +H+G ++T+GQ + LG+ YVV+KD+ENNI+
Sbjct: 214 LPAQPGKIITVD-GDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILV 272
Query: 117 VSRNY-----YSFDKKRHLFHAGSLKLLSGLPPEKI-SQLHSVFYNCSLTIEHCEDGGED 170
V++ + S H + +G + ++ C T++ +D +
Sbjct: 273 VAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPC--TVKALDD--DR 328
Query: 171 IAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
I V+ E + GQ A FY G CLG G+I
Sbjct: 329 IEVI-FDEPVAAVTPGQSAVFYNGEVCLGGGII 360
Score = 79 (32.9 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 3 AISSMEFDYVASGHY---ANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
A + DY+A+GHY A+V S + S KDQ+YFL LS Q+ + +F
Sbjct: 115 AAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLF 168
>UNIPROTKB|H9KZX8 [details] [associations]
symbol:H9KZX8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0016783 "sulfurtransferase
activity" evidence=IEA] InterPro:IPR004506 InterPro:IPR023382
Pfam:PF03054 GO:GO:0005737 GO:GO:0008033 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 Gene3D:2.30.30.280
PANTHER:PTHR11933 GeneTree:ENSGT00390000014323 EMBL:AADN02041320
EMBL:AADN02041321 Ensembl:ENSGALT00000021262 Uniprot:H9KZX8
Length = 408
Score = 148 (57.2 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 46/152 (30%), Positives = 73/152 (48%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E + H+G++ YTIGQ L L + +VV+KD+ +FV+ +
Sbjct: 232 PQPGNFVSIEDKKVMGTHKGWFLYTIGQRARLAGLQGAW-FVVDKDVSTGDIFVAPSTDH 290
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 291 PALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLN--QDGSVWVT 348
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+V+ + + L GQFA FY+G CLGSG IL
Sbjct: 349 LVKPA---RALTPGQFAVFYKGDECLGSGKIL 377
>UNIPROTKB|Q9KSX8 [details] [associations]
symbol:mnmA "tRNA-specific 2-thiouridylase MnmA"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
eggNOG:COG0482 KO:K00566 ProtClustDB:PRK00143 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 OMA:QPGNIET PIR:C82237
RefSeq:NP_230773.1 ProteinModelPortal:Q9KSX8 SMR:Q9KSX8
DNASU:2614398 GeneID:2614398 KEGG:vch:VC1128 PATRIC:20081348
GO:GO:0004808 Uniprot:Q9KSX8
Length = 372
Score = 110 (43.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 42/152 (27%), Positives = 64/152 (42%)
Query: 63 IPMEGIILEAETGDFLEKHRGFWFYTIGQHQEL---GLLYIVYR--YVVEKDIENNIVFV 117
+P + +E G + +H+G ++T+GQ + L G+ + YV +KD++ N++
Sbjct: 222 LPAQPGKIETPEGKVIGEHQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIA 281
Query: 118 SRNYYSFDKKRHLFHAGSLKLLSGLP-PEKISQLHSVFYNCS---LTIEHCEDGGEDIAV 173
+ K H A L + P E + Y S TI D D
Sbjct: 282 VQGADHPLLKSHGLVAAQLHWVDRTPITEPVRCSVKTRYRQSDIACTIIPLSD---DRIK 338
Query: 174 VQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
V E + GQ A FYQG CLG G+I E
Sbjct: 339 VMFDEPQVAVTPGQSAVFYQGEICLGGGIIEE 370
Score = 77 (32.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 7 MEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
++ DY+A GHY V + + +KP + KDQ+YFL LS Q+ R +F
Sbjct: 125 LDADYIAMGHY--VRRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARTLF 176
>TIGR_CMR|VC_1128 [details] [associations]
symbol:VC_1128 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
eggNOG:COG0482 KO:K00566 ProtClustDB:PRK00143 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 OMA:QPGNIET PIR:C82237
RefSeq:NP_230773.1 ProteinModelPortal:Q9KSX8 SMR:Q9KSX8
DNASU:2614398 GeneID:2614398 KEGG:vch:VC1128 PATRIC:20081348
GO:GO:0004808 Uniprot:Q9KSX8
Length = 372
Score = 110 (43.8 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 42/152 (27%), Positives = 64/152 (42%)
Query: 63 IPMEGIILEAETGDFLEKHRGFWFYTIGQHQEL---GLLYIVYR--YVVEKDIENNIVFV 117
+P + +E G + +H+G ++T+GQ + L G+ + YV +KD++ N++
Sbjct: 222 LPAQPGKIETPEGKVIGEHQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIA 281
Query: 118 SRNYYSFDKKRHLFHAGSLKLLSGLP-PEKISQLHSVFYNCS---LTIEHCEDGGEDIAV 173
+ K H A L + P E + Y S TI D D
Sbjct: 282 VQGADHPLLKSHGLVAAQLHWVDRTPITEPVRCSVKTRYRQSDIACTIIPLSD---DRIK 338
Query: 174 VQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
V E + GQ A FYQG CLG G+I E
Sbjct: 339 VMFDEPQVAVTPGQSAVFYQGEICLGGGIIEE 370
Score = 77 (32.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 7 MEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
++ DY+A GHY V + + +KP + KDQ+YFL LS Q+ R +F
Sbjct: 125 LDADYIAMGHY--VRRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARTLF 176
>TIGR_CMR|CPS_2900 [details] [associations]
symbol:CPS_2900 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 KO:K00566 ProtClustDB:PRK00143
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
HOGENOM:HOG000218046 RefSeq:YP_269601.1 ProteinModelPortal:Q480B8
STRING:Q480B8 GeneID:3522033 KEGG:cps:CPS_2900 PATRIC:21468825
OMA:IFCNQRI BioCyc:CPSY167879:GI48-2950-MONOMER Uniprot:Q480B8
Length = 375
Score = 104 (41.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 38/152 (25%), Positives = 64/152 (42%)
Query: 63 IPMEGIILEAETGDFLEKHRGFWFYTIGQHQEL---GLLYIVYR--YVVEKDIENNIVFV 117
+P + I+E+ G + H G ++T+GQ + L GL YVVEKD+ N++ V
Sbjct: 221 LPAQPGIIESAEGVAVGHHDGLMYHTLGQRKGLRIGGLADAGEEPWYVVEKDLLRNVLIV 280
Query: 118 SRNYYS---FDK---KRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDI 171
+ + F K L L S + ++ +C++T D +
Sbjct: 281 GQGHNHPRLFSKGLIANQLHWVDRKALTSSIQCTVKTRYRQEDVSCTVT--PITDSATEE 338
Query: 172 AVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ +E + GQ FY+ CLG G+I
Sbjct: 339 YQIDFTEQQSSVTPGQSVVFYKDDVCLGGGII 370
Score = 74 (31.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDK-----PSVKDQTYFLSHLSQAQLRRLIF 53
A + DY+A+GHY V D+ K + KDQ+YFL L +AQL +F
Sbjct: 122 ACEDLGADYIATGHY--VQRELRDNSWKMIRGLDNNKDQSYFLYTLDEAQLAHTLF 175
>TIGR_CMR|SO_2633 [details] [associations]
symbol:SO_2633 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0008757 "S-adenosylmethionine-dependent methyltransferase
activity" evidence=ISS] HAMAP:MF_00144 InterPro:IPR004506
InterPro:IPR023382 Pfam:PF03054 GO:GO:0005524 GO:GO:0005737
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008033 GO:GO:0000049
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783 eggNOG:COG0482
KO:K00566 ProtClustDB:PRK00143 Gene3D:2.30.30.280 PANTHER:PTHR11933
TIGRFAMs:TIGR00420 HOGENOM:HOG000218046 OMA:QPGNIET
RefSeq:NP_718217.1 ProteinModelPortal:Q8CX40 SMR:Q8CX40
GeneID:1170335 KEGG:son:SO_2633 PATRIC:23524893 Uniprot:Q8CX40
Length = 372
Score = 107 (42.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 40/152 (26%), Positives = 68/152 (44%)
Query: 63 IPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFV 117
+P + +E G+ + H+G ++T+GQ + LG+ + YVV+KD++ N++ V
Sbjct: 220 LPAQPGNIETADGEVIGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVV 279
Query: 118 SRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLH-SVFYN-----CSLTIEHCEDGGEDI 171
+ + + L + P SQ+ Y C+LT + +D +
Sbjct: 280 GQGGHHPRLMSNGMLVNQLHWVDRKGPINGSQIVVKTRYRQQDIPCTLT--YLDDN--TL 335
Query: 172 AVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
VV E + GQ A FY G CLG G+I
Sbjct: 336 KVV-FDEPVAAVTPGQSAVFYDGEVCLGGGII 366
Score = 70 (29.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 7 MEFDYVASGHYA----NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
++ DY+A GHY N ++ + + KDQ+YFL LS Q+ R +F
Sbjct: 124 LDADYIAMGHYVRRRDNEDGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLF 174
>TIGR_CMR|GSU_2569 [details] [associations]
symbol:GSU_2569 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00144 InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
GO:GO:0005524 GO:GO:0005737 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566
OMA:HASEKKH ProtClustDB:PRK00143 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 RefSeq:NP_953615.2
ProteinModelPortal:Q74A22 GeneID:2686382 KEGG:gsu:GSU2569
PATRIC:22027989 BioCyc:GSUL243231:GH27-2546-MONOMER Uniprot:Q74A22
Length = 365
Score = 92 (37.4 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 39/147 (26%), Positives = 63/147 (42%)
Query: 65 MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSF 124
M G I++ + G+ L +H G + YT+GQ + LG+ + YVV D E V V
Sbjct: 227 MAGEIVDRK-GNVLGRHGGTYRYTVGQRRGLGIAHPTPLYVVGVDAERRQVIVG------ 279
Query: 125 DKKRHLFHAG--SLKLLSGLPPEKISQLHSVFYNCSLTIEH----CEDG--GEDIAVVQL 176
L G + ++ +PP Q +V +C + H C + A V+
Sbjct: 280 -PAEELLATGLTATEVTWVVPP----QGQTVEASCKIRYRHQPVPCTVAVRADGSAEVRF 334
Query: 177 SEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ ++ + GQ FY+ LG G I
Sbjct: 335 RQPEKSVTPGQAVVFYRDDEVLGGGWI 361
Score = 81 (33.6 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 10 DYVASGHYANVVHSSAD--H--KDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
D++A+GHYA V H + KDQ+YFL L+Q QL R +F L
Sbjct: 129 DFLATGHYARRVRGEDGLYHLLRGLDPAKDQSYFLFTLTQDQLARTLFPL 178
>FB|FBgn0040337 [details] [associations]
symbol:CG3021 species:7227 "Drosophila melanogaster"
[GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016783 "sulfurtransferase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR004506 InterPro:IPR023382
Pfam:PF03054 GO:GO:0005739 GO:GO:0005524 EMBL:AE014298
GO:GO:0008033 GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0016783 eggNOG:COG0482 KO:K00566 Gene3D:2.30.30.280
PANTHER:PTHR11933 TIGRFAMs:TIGR00420 GeneTree:ENSGT00390000014323
EMBL:AY051773 RefSeq:NP_652639.1 UniGene:Dm.23134
ProteinModelPortal:Q9W5B6 SMR:Q9W5B6 MINT:MINT-289915 STRING:Q9W5B6
PRIDE:Q9W5B6 EnsemblMetazoa:FBtr0070173 GeneID:53546
KEGG:dme:Dmel_CG3021 UCSC:CG3021-RA FlyBase:FBgn0040337
HOGENOM:HOG000216707 InParanoid:Q9W5B6 OMA:CHFRFIH
OrthoDB:EOG402V7K PhylomeDB:Q9W5B6 GenomeRNAi:53546 NextBio:841339
Bgee:Q9W5B6 Uniprot:Q9W5B6
Length = 389
Score = 91 (37.1 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 35/149 (23%), Positives = 61/149 (40%)
Query: 67 GIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-YSFD 125
G L+ ++G + H G +T+GQ L Y +V K+ +N ++V+ + +
Sbjct: 225 GPFLDIDSGAVVGHHEGIHQWTVGQRCRLSSFLQPY-FVARKEAASNTIYVASGHNHPAL 283
Query: 126 KKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEH------CE--DGGEDIAVVQLS 177
H+ L + +S S+ C +H C+ + +V+L
Sbjct: 284 LSTHIA-VDPPNWLCSKSQQILSDTGSL--RCRFRFQHTKPLVDCQLSISPSNTFLVELD 340
Query: 178 EDDQGLAAGQFAAFYQGRRCLGSGVILEA 206
+ + GQ+A FY CLGS IL A
Sbjct: 341 APLRAITPGQYAVFYDDTACLGSARILSA 369
Score = 82 (33.9 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 3 AISSMEFDYVASGHYA-----NVVHSSADHKDK----PS--VKDQTYFLSHLSQAQLRRL 51
A+ ++ +D VA+GHYA N + A + D P+ KDQT+FL+ +S+ L+R
Sbjct: 112 ALENLGYDAVATGHYARNSLGNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRT 171
Query: 52 IFHL 55
+F L
Sbjct: 172 MFPL 175
>TIGR_CMR|ECH_0872 [details] [associations]
symbol:ECH_0872 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0004808
"tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006396 "RNA processing" evidence=ISS] HAMAP:MF_00144
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054 GO:GO:0005524
GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0008033
GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
eggNOG:COG0482 HOGENOM:HOG000218045 KO:K00566 ProtClustDB:PRK00143
Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
RefSeq:YP_507667.1 ProteinModelPortal:Q2GFW6 STRING:Q2GFW6
GeneID:3927304 KEGG:ech:ECH_0872 PATRIC:20577146 OMA:GTDSSVA
BioCyc:ECHA205920:GJNR-875-MONOMER Uniprot:Q2GFW6
Length = 367
Score = 89 (36.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 38/141 (26%), Positives = 63/141 (44%)
Query: 66 EGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFD 125
+G I++ +G+ L +H G +TIGQ + +GL YV++ + + N V V
Sbjct: 231 KGNIIDT-SGNILGQHDGIVNFTIGQRRGIGLSSKEPLYVIKLNPDTNEVTVGHKSALLQ 289
Query: 126 KKRHLFHAGSLKLLSGLPPEKIS---QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQG 182
K H+ L + +P ++ +L S ++ S I + D + A V L +
Sbjct: 290 NKLHIEKINWL-VKDKIPHTGLNVKVKLRSS-HSGSTAIVYPNDNNK--ATVLLQDTYCT 345
Query: 183 LAAGQFAAFYQGRRCLGSGVI 203
+ GQ Y G R LG G I
Sbjct: 346 VTPGQACVIYDGDRMLGGGWI 366
Score = 79 (32.9 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
++A S++ D + +GHY + D + K + KDQ+YFL + QL+ L F L
Sbjct: 125 LNATKSLDADILVTGHYIRKIEQDDDIYVYSSKDTKKDQSYFLFATTIEQLKFLRFPL 182
>DICTYBASE|DDB_G0288979 [details] [associations]
symbol:trmu "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase"
species:44689 "Dictyostelium discoideum" [GO:0016783
"sulfurtransferase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000049 "tRNA binding" evidence=IEA]
InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
dictyBase:DDB_G0288979 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000154_GR EMBL:AAFI02000129 GO:GO:0008033
GO:GO:0000049 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0016783
eggNOG:COG0482 KO:K00566 Gene3D:2.30.30.280 PANTHER:PTHR11933
TIGRFAMs:TIGR00420 RefSeq:XP_636447.1 ProteinModelPortal:Q54I63
STRING:Q54I63 EnsemblProtists:DDB0238286 GeneID:8626899
KEGG:ddi:DDB_G0288979 OMA:NWINEIP ProtClustDB:CLSZ2515581
Uniprot:Q54I63
Length = 451
Score = 99 (39.9 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 45/155 (29%), Positives = 67/155 (43%)
Query: 67 GIILEAETGDFLE--KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSF 124
G + T F++ KH+G YT+GQ + L Y ++V DIE NIV+V F
Sbjct: 288 GDFFDISTNSFIKGKKHKGSVCYTMGQKANIDSLSERY-FIVRSDIERNIVYVCPES-QF 345
Query: 125 DKKR--HLFHAGSLKLLSGLPPE-KISQLHSVFYNC-------SLTIEHCED----GGED 170
D+ + F+ S ++ +P E K Q C +LTI+ G
Sbjct: 346 DQFSLYYEFNTHSFNWINEIPTEVKSEQGFKGRGICRHRGDVVNLTIKDTGKTSPIDGSV 405
Query: 171 IAVVQLSEDDQGLAAGQFAAFYQGR--RCLGSGVI 203
I V L + + +A+GQ + RC G GVI
Sbjct: 406 IYSVNLDQPLRSVASGQILCLFDRNTDRCFGGGVI 440
Score = 67 (28.6 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 10 DYVASGHYANVVHSSAD-----------HKDKPSVKDQTYFLSHLSQAQLRRLIF 53
DY+A+GHY+N+ + + H+ KDQT+FL +L++ IF
Sbjct: 181 DYIATGHYSNLYYGEENVGDNNNNNLQLHRAIDKNKDQTFFLCMTKGERLKQAIF 235
>CGD|CAL0003878 [details] [associations]
symbol:orf19.7245 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0004808 "tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"
evidence=IEA] [GO:0070903 "mitochondrial tRNA thio-modification"
evidence=IEA] InterPro:IPR004506 InterPro:IPR023382 Pfam:PF03054
CGD:CAL0003878 GO:GO:0005737 GO:GO:0008033 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0016783 EMBL:AACQ01000092 eggNOG:COG0482
KO:K00566 Gene3D:2.30.30.280 PANTHER:PTHR11933 TIGRFAMs:TIGR00420
RefSeq:XP_715045.1 ProteinModelPortal:Q59ZU6 STRING:Q59ZU6
GeneID:3643278 KEGG:cal:CaO19.7245 Uniprot:Q59ZU6
Length = 423
Score = 101 (40.6 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 38/141 (26%), Positives = 62/141 (43%)
Query: 73 ETGDFLEKHRGFWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKK 127
E G +H+G W TIGQ + + Y +V +K+ E N + + + + D
Sbjct: 282 EDGKVWGQHKGLWHATIGQKSSVCMPQADPQYQGIWFVSDKNYEKNQIIIVKGH---DNP 338
Query: 128 RHLFHAGSLKLLSGL-PPEKISQLHSV---FYNCSLTIEHCED-GGEDIAVVQLSEDDQG 182
+ L L L P EK+ L S+ +++ S +I +D V+L +
Sbjct: 339 KLFKQTVELTQLEWLHPKEKVLCLQSLQFQYHSLSKSIPVTRIIESQDRLTVELETPVRA 398
Query: 183 LAAGQFAAFYQGRRCLGSGVI 203
LA GQ Y+G + LG G+I
Sbjct: 399 LAPGQAGVLYKGNQVLGGGMI 419
Score = 64 (27.6 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 11 YVASGHYANVV-HSSAD--H--KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLY 58
++ +GHYA ++ H+ H + KDQ+Y+LS + Q+ L +++ + Y
Sbjct: 176 WLVTGHYARIMKHNETGEYHLLRGLSQRKDQSYYLSSIPQSSLSKILLPIGHY 228
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 300 300 0.00095 115 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 609 (65 KB)
Total size of DFA: 233 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.17u 0.10s 24.27t Elapsed: 00:00:01
Total cpu time: 24.18u 0.10s 24.28t Elapsed: 00:00:01
Start: Sat May 11 01:12:34 2013 End: Sat May 11 01:12:35 2013