BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048403
(300 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225435460|ref|XP_002282827.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Vitis vinifera]
Length = 540
Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 204/347 (58%), Positives = 230/347 (66%), Gaps = 55/347 (15%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
MDAISS EFDYVASGHYANVVHS D DKPSV KDQTYFLSHLSQ QL+RLI
Sbjct: 193 MDAISSKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLI 252
Query: 53 FHLVLYPR---------LTIP----------------------------MEGIILEAETG 75
F L P+ L +P EGIILEAETG
Sbjct: 253 FPLGCIPKDEVRSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAETG 312
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D L KHRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNY+S DK+R LF GS
Sbjct: 313 DLLGKHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGS 371
Query: 136 LKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
LK +S PP +I+QL FYNCS T+E EDG ED+AVVQLSEDDQGLAAGQF
Sbjct: 372 LKWISREPPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAAGQFT 431
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPME-FDN 248
AFYQGR C+GSGVILE+WDDQGFPVC KALEIARMEDKSKLGKPVKIKV+ +TP + D
Sbjct: 432 AFYQGRSCIGSGVILESWDDQGFPVCAKALEIARMEDKSKLGKPVKIKVRPETPPKGSDQ 491
Query: 249 NKGIESSRNLFNGQNGVVENRNTTSQVQEEAIPRFPGNWMHKLSEKW 295
GI+ R L N Q V + + +S + EA RFP NW+ K+ EKW
Sbjct: 492 IDGIKLDRELANSQAAVTDEISRSS--EGEARSRFPMNWLQKIREKW 536
>gi|297746327|emb|CBI16383.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 204/347 (58%), Positives = 230/347 (66%), Gaps = 55/347 (15%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
MDAISS EFDYVASGHYANVVHS D DKPSV KDQTYFLSHLSQ QL+RLI
Sbjct: 197 MDAISSKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLI 256
Query: 53 FHLVLYPR---------LTIP----------------------------MEGIILEAETG 75
F L P+ L +P EGIILEAETG
Sbjct: 257 FPLGCIPKDEVRSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAETG 316
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D L KHRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNY+S DK+R LF GS
Sbjct: 317 DLLGKHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGS 375
Query: 136 LKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
LK +S PP +I+QL FYNCS T+E EDG ED+AVVQLSEDDQGLAAGQF
Sbjct: 376 LKWISREPPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAAGQFT 435
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPME-FDN 248
AFYQGR C+GSGVILE+WDDQGFPVC KALEIARMEDKSKLGKPVKIKV+ +TP + D
Sbjct: 436 AFYQGRSCIGSGVILESWDDQGFPVCAKALEIARMEDKSKLGKPVKIKVRPETPPKGSDQ 495
Query: 249 NKGIESSRNLFNGQNGVVENRNTTSQVQEEAIPRFPGNWMHKLSEKW 295
GI+ R L N Q V + + +S + EA RFP NW+ K+ EKW
Sbjct: 496 IDGIKLDRELANSQAAVTDEISRSS--EGEARSRFPMNWLQKIREKW 540
>gi|449448726|ref|XP_004142116.1| PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cucumis
sativus]
gi|449524848|ref|XP_004169433.1| PREDICTED: tRNA-specific 2-thiouridylase MnmA-like [Cucumis
sativus]
Length = 538
Score = 342 bits (876), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 190/346 (54%), Positives = 226/346 (65%), Gaps = 55/346 (15%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
MDAIS+MEFDYVASGHYANV+H SAD DKPSV KDQTYFLSHLSQ QL+RL+
Sbjct: 191 MDAISNMEFDYVASGHYANVIHPSADQMDKPSVLELSKDMVKDQTYFLSHLSQNQLKRLL 250
Query: 53 FHLVLYPR---------LTIPM----------------------------EGIILEAETG 75
F L P+ +P EG+ILEAE+G
Sbjct: 251 FPLGCIPKDEVRKLAAKFNLPNKDRKDSQGICFLGKIKFSEFVARHIGEDEGVILEAESG 310
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
DFL KHRGFWFYTIGQ Q L L + YVVEKDI+NN+VFVSRNY+SFDK+R +F GS
Sbjct: 311 DFLGKHRGFWFYTIGQRQGLRLPGGPW-YVVEKDIKNNVVFVSRNYFSFDKRRRVFRVGS 369
Query: 136 LKLLSGLPPEKISQLHS------VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
LK LSG PP++ ++L FY+C+LT+EH EDG ED+AVV LSEDDQGLAAGQFA
Sbjct: 370 LKWLSGFPPDQFTELQCKVRHGPSFYSCNLTMEHSEDGHEDVAVVHLSEDDQGLAAGQFA 429
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPMEFDNN 249
AFY+GR C+GSGVILE+WDDQGFPVC+KA+E A+MEDKSKLGKP+KIKVK ++ M+
Sbjct: 430 AFYKGRSCIGSGVILESWDDQGFPVCQKAIENAQMEDKSKLGKPIKIKVKPESGMKESKA 489
Query: 250 K-GIESSRNLFNGQNGVVENRNTTSQVQEEAIPRFPGNWMHKLSEK 294
K E L N + VVE S + A P W+ L +K
Sbjct: 490 KDDTEIHDKLRNEEATVVEQIREVSPDEAMATPSM--KWLGSLKKK 533
>gi|255544898|ref|XP_002513510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
putative [Ricinus communis]
gi|223547418|gb|EEF48913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
putative [Ricinus communis]
Length = 497
Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 180/318 (56%), Positives = 213/318 (66%), Gaps = 53/318 (16%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
MDAI++MEFDYVASGHYA V+H SAD ++PSV KDQTYFLSHLSQAQLRRLI
Sbjct: 180 MDAINNMEFDYVASGHYAKVIHPSADEINQPSVLELSKDMVKDQTYFLSHLSQAQLRRLI 239
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L +P MEGI+LEAETG
Sbjct: 240 FPLGGISKDEVRKLATLFNLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGIMLEAETG 299
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
DFL HRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNY+SFDK+R L GS
Sbjct: 300 DFLGNHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVKNNVVFVSRNYFSFDKRRRLLRVGS 358
Query: 136 LKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L+ +G PP++ S+L FYNCS+ IE E +D+A+VQL EDDQGLAAGQFA
Sbjct: 359 LRWFNGSPPKETSELQCKVRHGPGFYNCSVVIEPGEVDDQDVAIVQLCEDDQGLAAGQFA 418
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPM-EFDN 248
AFY+GR C+GSGVILE+W+DQGFPVC++ALE+AR+EDKS+LGKPVKIKVK + P+ EFD
Sbjct: 419 AFYKGRTCIGSGVILESWNDQGFPVCERALELARIEDKSELGKPVKIKVKPEIPVREFDG 478
Query: 249 NKGIESSRNLFNGQNGVV 266
GIE R L N Q V
Sbjct: 479 KDGIEVERGLNNSQVAVT 496
>gi|356541193|ref|XP_003539065.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Glycine max]
Length = 488
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/305 (55%), Positives = 200/305 (65%), Gaps = 52/305 (17%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
+DAI M FDYVASGHYANV+H +D +D+PSV KDQTYFLSHLSQ+QL++L+
Sbjct: 171 LDAIGGMGFDYVASGHYANVIHPCSDRRDEPSVLELSQDMVKDQTYFLSHLSQSQLKQLL 230
Query: 53 FHLVLYPR---------LTIP----------------------------MEGIILEAETG 75
F L P+ +P EG+ILEAETG
Sbjct: 231 FPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGVILEAETG 290
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
DFL KHRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNY+SFDK+R +F GS
Sbjct: 291 DFLGKHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGS 349
Query: 136 LKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
K LSGLPP + +QL FY+CSL +E DG AVV++SEDDQGLAAGQFA
Sbjct: 350 FKWLSGLPPGQTTQLQCKVRHGPGFYDCSLQMEVEADGQCHSAVVRISEDDQGLAAGQFA 409
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPMEFDNN 249
AFY+GR C+GSGVILE WDDQ FPVC KALEIARMEDKSK+G PVKIKVK P E ++
Sbjct: 410 AFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSKIGNPVKIKVKPDNPQEVCDS 469
Query: 250 KGIES 254
+ S
Sbjct: 470 AELAS 474
>gi|224055025|ref|XP_002298404.1| predicted protein [Populus trichocarpa]
gi|222845662|gb|EEE83209.1| predicted protein [Populus trichocarpa]
Length = 434
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 171/310 (55%), Positives = 202/310 (65%), Gaps = 53/310 (17%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
MDAI++MEFDYVASGHYA+V+H +D +KPSV KDQTYFLSHL+QAQL+RLI
Sbjct: 117 MDAINNMEFDYVASGHYAHVIHPVSDQINKPSVLELSKDKLKDQTYFLSHLTQAQLKRLI 176
Query: 53 FHLVLYPR---------LTIP----------------------------MEGIILEAETG 75
F L P+ +P EG+ILEAETG
Sbjct: 177 FPLGCIPKEEVRNLASKFDLPNKDRKDSQGICFLGKIKFSEFVGRHIGESEGVILEAETG 236
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
DFL HRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNY+S DK+R F GS
Sbjct: 237 DFLGIHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVKNNVVFVSRNYFSLDKRRRSFRVGS 295
Query: 136 LKLLSGLPPEKISQLHS------VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
LK LSG P + +QL FY+CS+ IE ED E++ V L EDDQGLAAGQF
Sbjct: 296 LKWLSGSPTDMTTQLQCKVRHGPTFYDCSVKIELGEDSPEEVVAVHLCEDDQGLAAGQFT 355
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTP-MEFDN 248
AFYQGR C+GSGVILE+WDD+GFPVC+KALE+AR+EDKSKLGKPVKIKVK +T E
Sbjct: 356 AFYQGRTCIGSGVILESWDDKGFPVCQKALELARLEDKSKLGKPVKIKVKPETSDQESVQ 415
Query: 249 NKGIESSRNL 258
GIE + L
Sbjct: 416 KDGIEPDKGL 425
>gi|297852856|ref|XP_002894309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Arabidopsis lyrata subsp. lyrata]
gi|297340151|gb|EFH70568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/302 (53%), Positives = 189/302 (62%), Gaps = 57/302 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
MDAIS ME+DYV SGHYA VVH D D SV KDQTYFLSHLSQ QL+RLI
Sbjct: 194 MDAISDMEYDYVGSGHYAKVVHPPVDQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLI 253
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L + +P MEGIILEAETG
Sbjct: 254 FPLGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCAHIGEMEGIILEAETG 313
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
DFL HRGFWFYTIGQ Q L L + YVVEKD +NN+VFVSRNYYS DK+R +F GS
Sbjct: 314 DFLGNHRGFWFYTIGQRQGLRLPGGPW-YVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 372
Query: 136 LKLLSGLPPEKISQLHS------VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L+ LSG P + +L FY+CS +E DG D+AVV L EDDQGLAAGQFA
Sbjct: 373 LRWLSGKPSGNVRELRCKVRHGPSFYSCSFEME--ADG--DVAVVHLDEDDQGLAAGQFA 428
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIK-VKLQTPMEFDN 248
AFY+G C+GSGVILE+WDDQ FPVC KAL++A MEDK+KLGKPVKI+ + L +E D+
Sbjct: 429 AFYEGTTCIGSGVILESWDDQCFPVCAKALQLAAMEDKTKLGKPVKIRTMPLTLSVEADS 488
Query: 249 NK 250
+
Sbjct: 489 GE 490
>gi|145336613|ref|NP_175542.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Arabidopsis thaliana]
gi|332194528|gb|AEE32649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Arabidopsis thaliana]
Length = 497
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 181/287 (63%), Gaps = 56/287 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
MDAIS ME+DYV SGHYA VVH AD D SV KDQTYFLSHLSQ QL+RL+
Sbjct: 191 MDAISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLL 250
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L + +P MEGIILEAE+G
Sbjct: 251 FPLGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAESG 310
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
DFL HRGFWFYTIGQ Q L L + YVVEKD +NN+VFVSRNYYS DK+R +F GS
Sbjct: 311 DFLGNHRGFWFYTIGQRQGLRLPGGPW-YVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 369
Query: 136 LKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L+ SG P K+ +L FY+CS +E G D+AVV L EDDQGLAAGQFA
Sbjct: 370 LRWNSGKPSGKVRELRCKVRHGPGFYSCSFEME----GDGDVAVVHLDEDDQGLAAGQFA 425
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AFY+G C+GSGVILE+WDDQ FPVC KAL++A +EDK+KLGKPVKI
Sbjct: 426 AFYEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKI 472
>gi|62320516|dbj|BAD95081.1| hypothetical protein [Arabidopsis thaliana]
Length = 497
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 181/287 (63%), Gaps = 56/287 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
MDAIS ME+DYV SGHYA VVH AD D SV KDQTYFLSHLSQ QL+RL+
Sbjct: 191 MDAISDMEYDYVGSGHYARVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLL 250
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L + +P MEGIILEAE+G
Sbjct: 251 FPLGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAESG 310
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
DFL HRGFWFYTIGQ Q L L + YVVEKD +NN+VFVSRNYYS DK+R +F GS
Sbjct: 311 DFLGNHRGFWFYTIGQRQGLRLPGGPW-YVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 369
Query: 136 LKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L+ SG P K+ +L FY+CS +E G D+AVV L EDDQGLAAGQFA
Sbjct: 370 LRWNSGKPSGKVRELRCKVRHGPGFYSCSFEME----GDGDVAVVHLDEDDQGLAAGQFA 425
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AFY+G C+GSGVILE+WDDQ FPVC KAL++A +EDK+KLGKPVKI
Sbjct: 426 AFYEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKI 472
>gi|4836940|gb|AAD30642.1|AC006085_15 Unknown protein [Arabidopsis thaliana]
gi|119935887|gb|ABM06024.1| At1g51310 [Arabidopsis thaliana]
Length = 421
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 181/287 (63%), Gaps = 56/287 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
MDAIS ME+DYV SGHYA VVH AD D SV KDQTYFLSHLSQ QL+RL+
Sbjct: 115 MDAISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLL 174
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L + +P MEGIILEAE+G
Sbjct: 175 FPLGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAESG 234
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
DFL HRGFWFYTIGQ Q L L + YVVEKD +NN+VFVSRNYYS DK+R +F GS
Sbjct: 235 DFLGNHRGFWFYTIGQRQGLRLPGGPW-YVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 293
Query: 136 LKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L+ SG P K+ +L FY+CS +E G D+AVV L EDDQGLAAGQFA
Sbjct: 294 LRWNSGKPSGKVRELRCKVRHGPGFYSCSFEME----GDGDVAVVHLDEDDQGLAAGQFA 349
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AFY+G C+GSGVILE+WDDQ FPVC KAL++A +EDK+KLGKPVKI
Sbjct: 350 AFYEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKI 396
>gi|356544553|ref|XP_003540714.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-specific 2-thiouridylase
mnmA-like [Glycine max]
Length = 467
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 159/299 (53%), Positives = 179/299 (59%), Gaps = 75/299 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPS--------VKDQTYFLSHLSQAQLRRLI 52
+DAI M FDYVASGHYANV+H AD D+PS VKDQTYFLSHLSQ+QLRRL+
Sbjct: 185 LDAIGGMGFDYVASGHYANVIHPCADWMDEPSVLELSQDMVKDQTYFLSHLSQSQLRRLL 244
Query: 53 FHLVLYP---------RLTIP----------------------------MEGIILEAETG 75
F L P + +P EGIILEAETG
Sbjct: 245 FPLGCIPKDEVRKLATKFDLPNKDRKDSQGICFLGKIRFSEFVTRHIGEREGIILEAETG 304
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
DFL KHRGFWF +NN+VFVSRNY+SFDK+R +F GS
Sbjct: 305 DFLGKHRGFWF------------------------KNNVVFVSRNYFSFDKRRRVFCVGS 340
Query: 136 LKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
K LSGLPP + SQL FY+CSL +E DG AVV +SEDDQGLAAGQFA
Sbjct: 341 FKWLSGLPPGQTSQLQCKVRHGPGFYDCSLQMEVEGDGQCRSAVVCISEDDQGLAAGQFA 400
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPMEFDN 248
AFY+GR C+GSGVILE WDDQ FPVC KALEIARMEDKSK+G PVKIKVK P D+
Sbjct: 401 AFYEGRTCIGSGVILEFWDDQSFPVCTKALEIARMEDKSKIGNPVKIKVKPDNPQVCDS 459
>gi|357113810|ref|XP_003558694.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Brachypodium
distachyon]
Length = 481
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/287 (52%), Positives = 185/287 (64%), Gaps = 53/287 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
++AI ++ FDY+ASGHYA+VVH S ++ + PSV KDQTYFLSHLSQ QLRRL+
Sbjct: 180 LEAIDNLGFDYIASGHYAHVVHPSIENVEGPSVLQLSKDKVKDQTYFLSHLSQPQLRRLL 239
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L ++ +P MEG++LEAETG
Sbjct: 240 FPLGCITKDEVRSLATQMDLPNQGRKDSQGICFLGKVKFSEFVERHIGEMEGVLLEAETG 299
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D+L +HRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNYYS DK+R F GS
Sbjct: 300 DYLGRHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGS 358
Query: 136 LKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L S PE QL HS F+NC++T E E+ G D+ V LSEDDQGLAAGQFA
Sbjct: 359 LNWFSDSGPENDEQLKCKVRHSPEFHNCTVTREQTEESG-DVLAVHLSEDDQGLAAGQFA 417
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AFY+ CLGSG+IL++WD+ FPVC ALEIARMEDKSKLGKPV+I
Sbjct: 418 AFYRDNTCLGSGIILDSWDEMSFPVCANALEIARMEDKSKLGKPVRI 464
>gi|218192183|gb|EEC74610.1| hypothetical protein OsI_10221 [Oryza sativa Indica Group]
Length = 488
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/287 (52%), Positives = 183/287 (63%), Gaps = 53/287 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
++AI ++ FDY+ASGHYA+VVH S D + PSV KDQTYFLSHLSQ QLRRL+
Sbjct: 187 LEAIENLGFDYIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLL 246
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L ++ +P MEG++LEAETG
Sbjct: 247 FPLGCITKDEVRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEAETG 306
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D+L HRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNYYS DK+R F GS
Sbjct: 307 DYLGTHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGS 365
Query: 136 LKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L S P QL HS F++C++T E + G I VV+LSEDDQGLAAGQFA
Sbjct: 366 LNWFSNSGPTNNEQLKCKVRHSPEFHDCTVTQEQTSENGV-ILVVRLSEDDQGLAAGQFA 424
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AFY+ CLGSG+IL++WD+ FPVC +ALEIARMEDKS+LGKPVKI
Sbjct: 425 AFYRDNLCLGSGIILDSWDEMNFPVCARALEIARMEDKSRLGKPVKI 471
>gi|242042037|ref|XP_002468413.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor]
gi|241922267|gb|EER95411.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor]
Length = 489
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/287 (52%), Positives = 181/287 (63%), Gaps = 53/287 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPS--------VKDQTYFLSHLSQAQLRRLI 52
++AI ++ FDY+ASGHYA+VVH S ++ + PS VKDQTYFLSHLSQ QLRRL+
Sbjct: 187 LEAIENLGFDYIASGHYAHVVHPSTENTEAPSILQLSKDKVKDQTYFLSHLSQPQLRRLL 246
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L ++ +P MEGIILEAE+G
Sbjct: 247 FPLGCITKDEVRRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGEMEGIILEAESG 306
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D+L KHRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNYYS DK+R F GS
Sbjct: 307 DYLGKHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGS 365
Query: 136 LKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L P QL HS F++C+L EH E+ ED VV LSEDDQGLAAGQFA
Sbjct: 366 LNWFDSSGPGNNEQLKCKVRHSPEFHDCTLIKEHTEE-NEDALVVHLSEDDQGLAAGQFA 424
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AFY CLGSG+IL++WD FPVC +ALEIA++EDKS LGKPV+I
Sbjct: 425 AFYSEHSCLGSGIILDSWDKMSFPVCSRALEIAKLEDKSSLGKPVRI 471
>gi|115451057|ref|NP_001049129.1| Os03g0174600 [Oryza sativa Japonica Group]
gi|108706458|gb|ABF94253.1| tRNA methyl transferase family protein, expressed [Oryza sativa
Japonica Group]
gi|113547600|dbj|BAF11043.1| Os03g0174600 [Oryza sativa Japonica Group]
gi|215737060|dbj|BAG95989.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 488
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 150/287 (52%), Positives = 182/287 (63%), Gaps = 53/287 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
++AI ++ FDY+ASGHYA+VVH S D + PSV KDQTYFLSHLSQ QLRRL+
Sbjct: 187 LEAIENLGFDYIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLL 246
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L ++ +P MEG++LEAETG
Sbjct: 247 FPLGCITKDEVRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEAETG 306
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D+L HRGFWFYTIGQ Q L L + YVVEK ++NN+VFVSRNYYS DK+R F GS
Sbjct: 307 DYLGTHRGFWFYTIGQRQGLRLPGGPW-YVVEKGVQNNVVFVSRNYYSLDKRRRTFRVGS 365
Query: 136 LKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L S P QL HS F++C++T E + G I VV+LSEDDQGLAAGQFA
Sbjct: 366 LNWFSNSGPTNNEQLKCKVRHSPEFHDCTVTQEQTSEHGV-ILVVRLSEDDQGLAAGQFA 424
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AFY+ CLGSG+IL++WD+ FPVC +ALEIARMEDKS+LGKPVKI
Sbjct: 425 AFYRDNLCLGSGIILDSWDEMNFPVCARALEIARMEDKSRLGKPVKI 471
>gi|326529305|dbj|BAK01046.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/292 (50%), Positives = 183/292 (62%), Gaps = 57/292 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
++AI ++ FDY+ASGHYA+VVH ++ + PSV KDQTYFLSHLSQ+QLRRL+
Sbjct: 184 LEAIENLGFDYIASGHYAHVVHPPVENAEGPSVLQLSKDEVKDQTYFLSHLSQSQLRRLL 243
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L ++ +P +EGI+LEAETG
Sbjct: 244 FPLGCITKDEVRSLAVQMNLPNQARKDSQGICFLGKVKFSEFVQAHIGEIEGILLEAETG 303
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D+L HRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNYYS DK+R F GS
Sbjct: 304 DYLGTHRGFWFYTIGQRQGLRLSGGPW-YVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGS 362
Query: 136 LKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCED-----GGEDIAVVQLSEDDQGLA 184
L S P +L HS F+NC++T E E+ D+ V+LSEDDQGLA
Sbjct: 363 LNWFSDSGPADNERLKCKVRHSPDFHNCTVTREQTEELVVNSNNGDVLAVRLSEDDQGLA 422
Query: 185 AGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AGQFAAFY+ CLGSG+IL++WD+ FPVC KALE AR+EDKSKLGKPV+I
Sbjct: 423 AGQFAAFYRDSACLGSGIILDSWDEMSFPVCAKALETARLEDKSKLGKPVRI 474
>gi|195652181|gb|ACG45558.1| tRNA methyltransferase [Zea mays]
Length = 486
Score = 256 bits (655), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 145/287 (50%), Positives = 179/287 (62%), Gaps = 53/287 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
++AI ++ FDY+ASGHYA+VVH SA++ + PSV KDQTYFLSHLSQ+QLRRL+
Sbjct: 184 LEAIENLGFDYIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLL 243
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L ++ +P EGIILEAE+G
Sbjct: 244 FPLGCITKDEVRRLATQMALPNQGRKDSQGICFLGKVKFSEFVERHIGEKEGIILEAESG 303
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D+L HRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNYYS DK+R F GS
Sbjct: 304 DYLGIHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGS 362
Query: 136 LKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L P QL HS F++C+L E E+ G D VV L+EDDQGLAAGQFA
Sbjct: 363 LNWFDNFGPGNNEQLKCKVRHSPEFHDCTLVKERSEENG-DALVVHLAEDDQGLAAGQFA 421
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AFY CLGSG+IL++WD FPVC +ALEIA++ DKS LGKP++I
Sbjct: 422 AFYSENVCLGSGIILDSWDKMSFPVCSRALEIAKLADKSSLGKPIRI 468
>gi|223942189|gb|ACN25178.1| unknown [Zea mays]
gi|414865090|tpg|DAA43647.1| TPA: hypothetical protein ZEAMMB73_761275 [Zea mays]
Length = 329
Score = 256 bits (655), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 145/287 (50%), Positives = 179/287 (62%), Gaps = 53/287 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
++AI ++ FDY+ASGHYA+VVH SA++ + PSV KDQTYFLSHLSQ+QLRRL+
Sbjct: 27 LEAIENLGFDYIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLL 86
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L ++ +P EGIILEAE+G
Sbjct: 87 FPLGCITKDEVRRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGEKEGIILEAESG 146
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D+L HRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNYYS DK+R F GS
Sbjct: 147 DYLGIHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGS 205
Query: 136 LKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L P QL HS F++C+L E E+ G D VV L+EDDQGLAAGQFA
Sbjct: 206 LNWFDNCGPGNNEQLKCKVRHSPEFHDCTLVKERSEENG-DALVVHLAEDDQGLAAGQFA 264
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AFY CLGSG+IL++WD FPVC +ALEIA++ DKS LGKP++I
Sbjct: 265 AFYSENVCLGSGIILDSWDKMSFPVCSRALEIAKLADKSSLGKPIRI 311
>gi|212721228|ref|NP_001131207.1| uncharacterized protein LOC100192515 [Zea mays]
gi|194690872|gb|ACF79520.1| unknown [Zea mays]
gi|414865088|tpg|DAA43645.1| TPA: tRNA methyltransferase [Zea mays]
Length = 486
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/287 (50%), Positives = 179/287 (62%), Gaps = 53/287 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
++AI ++ FDY+ASGHYA+VVH SA++ + PSV KDQTYFLSHLSQ+QLRRL+
Sbjct: 184 LEAIENLGFDYIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLL 243
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L ++ +P EGIILEAE+G
Sbjct: 244 FPLGCITKDEVRRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGEKEGIILEAESG 303
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D+L HRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNYYS DK+R F GS
Sbjct: 304 DYLGIHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGS 362
Query: 136 LKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L P QL HS F++C+L E E+ G D VV L+EDDQGLAAGQFA
Sbjct: 363 LNWFDNCGPGNNEQLKCKVRHSPEFHDCTLVKERSEENG-DALVVHLAEDDQGLAAGQFA 421
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
AFY CLGSG+IL++WD FPVC +ALEIA++ DKS LGKP++I
Sbjct: 422 AFYSENVCLGSGIILDSWDKMSFPVCSRALEIAKLADKSSLGKPIRI 468
>gi|294463455|gb|ADE77257.1| unknown [Picea sitchensis]
Length = 323
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 184/312 (58%), Gaps = 63/312 (20%)
Query: 7 MEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLIFHLVLY 58
M+FDYVASGHYA+V H S + + K SV KDQTYFLSHLSQ QLR+L+F L
Sbjct: 1 MDFDYVASGHYAHVKHLSVECETKCSVLHLSADEVKDQTYFLSHLSQEQLRKLLFPLGCM 60
Query: 59 PRLTI-------------------------------------PMEGIILEAETGDFLEKH 81
+ + MEGI+LEAETGDFL KH
Sbjct: 61 SKEEVRNLAAEMGLLNKDRKDSQGLCFLGKVKFSEFVARHIGEMEGILLEAETGDFLGKH 120
Query: 82 RGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
RGFWFYTIGQ Q L L + YVV KD+ENN+VFVSRNY+S DKKR LFH SLK + G
Sbjct: 121 RGFWFYTIGQRQGLRLSGGPW-YVVAKDVENNVVFVSRNYFSLDKKRCLFHVSSLKWILG 179
Query: 142 LPPEKISQLHSV------FYNCSLTI---------EHCEDG--GEDIAVVQLSEDDQGLA 184
PP+ + +L FYNC + + EH G ++IA+V+LSEDDQGLA
Sbjct: 180 SPPKDLDKLQCKVRHGPKFYNCHMELVKGNLYKENEHQSLGETAQEIAIVRLSEDDQGLA 239
Query: 185 AGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKIKVKLQTPM 244
AGQ+ AFY+G CLGSG+I+++W D FPV KALEIARM+DKS L +PVKIK
Sbjct: 240 AGQYVAFYKGNTCLGSGIIIDSWGDNNFPVSSKALEIARMKDKSGLREPVKIKNLSDNTS 299
Query: 245 EFDNNKGIESSR 256
+ N G SS+
Sbjct: 300 KVTPNNGKISSQ 311
>gi|414865091|tpg|DAA43648.1| TPA: hypothetical protein ZEAMMB73_761275 [Zea mays]
Length = 226
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/177 (59%), Positives = 125/177 (70%), Gaps = 8/177 (4%)
Query: 66 EGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFD 125
EGIILEAE+GD+L HRGFWFYTIGQ Q L L + YVVEKD++NN+VFVSRNYYS D
Sbjct: 34 EGIILEAESGDYLGIHRGFWFYTIGQRQGLRLPGGPW-YVVEKDVQNNVVFVSRNYYSLD 92
Query: 126 KKRHLFHAGSLKLLSGLPPEKISQL-----HSV-FYNCSLTIEHCEDGGEDIAVVQLSED 179
K+R F GSL P QL HS F++C+L E E+ G D VV L+ED
Sbjct: 93 KRRRTFRVGSLNWFDNCGPGNNEQLKCKVRHSPEFHDCTLVKERSEENG-DALVVHLAED 151
Query: 180 DQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKSKLGKPVKI 236
DQGLAAGQFAAFY CLGSG+IL++WD FPVC +ALEIA++ DKS LGKP++I
Sbjct: 152 DQGLAAGQFAAFYSENVCLGSGIILDSWDKMSFPVCSRALEIAKLADKSSLGKPIRI 208
>gi|168035636|ref|XP_001770315.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678346|gb|EDQ64805.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 376
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/268 (39%), Positives = 133/268 (49%), Gaps = 63/268 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-----VHSSADHKDK-----PSVKDQTYFLSHLSQAQLRR 50
+D I +FD VASGHYA + + A+ + + VKDQTYFLSHL+Q QL R
Sbjct: 110 LDHIKDEQFDRVASGHYARIRKIYNCDTGAEERTELLLCPDEVKDQTYFLSHLTQEQLSR 169
Query: 51 LIFHLVLYPRLTIPM-------------------------------------EGIILEAE 73
LIF L + + + EG +LEAE
Sbjct: 170 LIFPLGGFTKAEVRQLAEVMGLYNKNRKDSQGICFLGKVKFSDFIAKHLGESEGRMLEAE 229
Query: 74 TGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
TG+ L H+GFWFYT+GQ + L + +VV KDI NN+VFVSR+Y+S DK+R F
Sbjct: 230 TGELLGLHKGFWFYTMGQRKGLRFSNGPW-FVVAKDIVNNVVFVSRHYFSEDKRRRSFRV 288
Query: 134 GSLKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDI---------AVVQLSE 178
S SG PP S L FY CSL I+ E + AVV L+E
Sbjct: 289 DSFNWFSGFPPADNSGLQCKVRHGPRFYTCSLDIQTDSTDSEAVTKESKSLTSAVVNLNE 348
Query: 179 DDQGLAAGQFAAFYQGRRCLGSGVILEA 206
DDQGLA GQ+AAFYQ CLGS VI E
Sbjct: 349 DDQGLAPGQYAAFYQNGVCLGSAVITET 376
>gi|222624284|gb|EEE58416.1| hypothetical protein OsJ_09614 [Oryza sativa Japonica Group]
Length = 410
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 112/200 (56%), Gaps = 46/200 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLI 52
++AI ++ FDY+ASGHYA+VVH S D + PSV KDQTYFLSHLSQ QLRRL+
Sbjct: 187 LEAIENLGFDYIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLL 246
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L ++ +P MEG++LEAETG
Sbjct: 247 FPLGCITKDEVRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEAETG 306
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
D+L HRGFWFYTIGQ Q L L + YVVEK ++NN+VFVSRNYYS DK+R F GS
Sbjct: 307 DYLGTHRGFWFYTIGQRQGLRLPGGPW-YVVEKGVQNNVVFVSRNYYSLDKRRRTFRVGS 365
Query: 136 LKLLSGLPPEKISQLHSVFY 155
L S P QL +
Sbjct: 366 LNWFSNSGPTNNEQLKCKLF 385
>gi|302819257|ref|XP_002991299.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii]
gi|300140879|gb|EFJ07597.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii]
Length = 375
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 141/271 (52%), Gaps = 56/271 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK--------DKPSVKDQTYFLSHLSQAQLRRLI 52
+D I +FD VASGHYA V + K VKDQTYFLS LSQ QL L+
Sbjct: 110 LDHIDRTKFDRVASGHYARVERYVDEQGTIRARLKLSKDEVKDQTYFLSQLSQEQLGFLM 169
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L L +P EG+++EAETG
Sbjct: 170 FPLGSLAKPEVRQLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGEKEGLLIEAETG 229
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+ KH+GFWFYTIGQ + + L + + YVV KD E N+V++SR+Y+S DKKR F+ +
Sbjct: 230 KTMGKHKGFWFYTIGQRRGISLSHGPW-YVVAKDSEKNLVYISRHYFSGDKKRRNFYVDN 288
Query: 136 LKLLSGLP----PEKISQLHS-VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
L S +P P K H F++C L +E + G A V+L +DQ LAAGQ+AA
Sbjct: 289 LSWFSTIPDPSCPIKCKVRHGPSFHDCELEVEREKQG----ARVKLLHNDQALAAGQYAA 344
Query: 191 FYQGRRCLGSGVILEAWDD-QGFPVCKKALE 220
FY G CLGSG+I E+ DD + V +ALE
Sbjct: 345 FYAGETCLGSGMITESMDDLESCTVSARALE 375
>gi|302812430|ref|XP_002987902.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii]
gi|300144291|gb|EFJ10976.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii]
Length = 375
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 139/271 (51%), Gaps = 56/271 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK--------DKPSVKDQTYFLSHLSQAQLRRLI 52
+D I +FD VASGHYA V + K VKDQTYFLS LSQ QL L+
Sbjct: 110 LDHIDRTKFDRVASGHYARVERYVDEQGTIRARLMLSKDEVKDQTYFLSQLSQEQLGFLM 169
Query: 53 FHL---------VLYPRLTIP----------------------------MEGIILEAETG 75
F L L L +P EG+++EAETG
Sbjct: 170 FPLGSLAKPEVRQLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGEKEGLLIEAETG 229
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+ KH+GFWFYTIGQ + + L + + YVV KD E N+V++SR+Y+S DKKR F+ +
Sbjct: 230 KTMGKHKGFWFYTIGQRRGISLSHGPW-YVVAKDSEKNLVYISRHYFSGDKKRRNFYVDN 288
Query: 136 LKLLSGLP----PEKISQLHS-VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
L S +P P K H F++C L E + G A V+L DQ LAAGQ+AA
Sbjct: 289 LSWFSTIPDPSCPIKCKVRHGPSFHDCELEFEREKQG----ARVKLLHSDQALAAGQYAA 344
Query: 191 FYQGRRCLGSGVILEAWDD-QGFPVCKKALE 220
FY G CLGSG+I E+ DD + V +ALE
Sbjct: 345 FYAGETCLGSGMITESMDDLESCTVSARALE 375
>gi|308809381|ref|XP_003082000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS)
[Ostreococcus tauri]
gi|116060467|emb|CAL55803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS)
[Ostreococcus tauri]
Length = 467
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 119/248 (47%), Gaps = 53/248 (21%)
Query: 8 EFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
EFD VASGHYA V + + + KDQTYFL++L+Q QLR + F + P+
Sbjct: 203 EFDRVASGHYAAVERDAVTGEASLVMSGDAFKDQTYFLANLTQEQLRAVSFPVGGMPKAD 262
Query: 63 I-------------------------------------PMEGIILEAETGDFLEKHRGFW 85
I M G I+E ETG L KHR +W
Sbjct: 263 IRSLATSAELPNAGRKDSQGICFLGKVKFSEFIAEHLGEMPGDIIEVETGKVLGKHRAYW 322
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP- 144
F+TIGQ L L+ YV KD NN+V+V+R+YYS DK R F+ +SG P
Sbjct: 323 FHTIGQRSGL-FLHGGPWYVAGKDCVNNVVYVTRDYYSLDKSRDTFNVAGFNWISGKEPD 381
Query: 145 -EKISQLH------SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
E I L Y+CS + + GE V +++DDQGLA GQ+A FY G +C
Sbjct: 382 LENIEGLRVKVRHGENIYSCSFKFKEID--GERCGEVTINQDDQGLAPGQYAVFYDGPKC 439
Query: 198 LGSGVILE 205
LG G ILE
Sbjct: 440 LGCGKILE 447
>gi|145352290|ref|XP_001420484.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580718|gb|ABO98777.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 394
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/248 (37%), Positives = 113/248 (45%), Gaps = 53/248 (21%)
Query: 8 EFDYVASGHYANVVHSSADHKDK-----PSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
EFD VASGHYA V + + + KDQTYFL+ LSQ QL + F + P+
Sbjct: 126 EFDRVASGHYAAVERADVGELARLVMSGDTFKDQTYFLADLSQEQLGSVCFPVGGMPKAE 185
Query: 63 I-------------------------------------PMEGIILEAETGDFLEKHRGFW 85
I M G I+E E+G L KHR +W
Sbjct: 186 IRALAASAELPNAGRKDSQGICFLGKVKFSEFIAEHLGEMPGDIIEVESGKVLGKHRAYW 245
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP- 144
F+TIGQ L L+ YV KD NNIV+V+R+YYS DK R F +SG P
Sbjct: 246 FHTIGQRSGL-FLHGGPWYVAGKDCVNNIVYVTRDYYSLDKARDTFTVAGFNWISGQEPP 304
Query: 145 -EKISQLH------SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
E I L Y CS + + GE V + +DDQGLA GQ+A FY G C
Sbjct: 305 LESIEGLRVKVRHGENIYACSFQFKDVD--GERCGEVNIGQDDQGLAPGQYAVFYDGDTC 362
Query: 198 LGSGVILE 205
LG G ILE
Sbjct: 363 LGCGKILE 370
>gi|224106175|ref|XP_002314072.1| predicted protein [Populus trichocarpa]
gi|222850480|gb|EEE88027.1| predicted protein [Populus trichocarpa]
Length = 111
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 9/107 (8%)
Query: 131 FHAGSLKLLSGLPPEKISQLHS---------VFYNCSLTIEHCEDGGEDIAVVQLSEDDQ 181
F GSL+ LSG PP++ +QL FY+C + +E G E++AVV L EDDQ
Sbjct: 5 FRVGSLRWLSGSPPDETNQLKCKEERARHGPAFYDCRVKVELGVHGHEEVAVVHLCEDDQ 64
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARMEDKS 228
GLAAGQF AFY+GR CL SGVILEAWDDQGFPVC+KALE+AR+EDKS
Sbjct: 65 GLAAGQFTAFYEGRTCLASGVILEAWDDQGFPVCQKALELARLEDKS 111
>gi|384252207|gb|EIE25683.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Coccomyxa
subellipsoidea C-169]
Length = 406
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 124/258 (48%), Gaps = 64/258 (24%)
Query: 9 FDYVASGHYANVVHSSADHK-------DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR- 60
FD +ASGHYA ++ + +KDQTYFL+HL+Q QL R IF L +
Sbjct: 157 FDRIASGHYARIIRDPQNPSAPVELALTPDPIKDQTYFLAHLTQQQLSRTIFPLGPLTKG 216
Query: 61 --------LTIPME----------------------------GIILEAETGDFLEKHRGF 84
L +P + G I+E ETG+ L H GF
Sbjct: 217 EVRRWAAALQLPNQARRDSQGICFLGKVRFSEFVREHLGTWPGAIVEEETGELLGHHEGF 276
Query: 85 WFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
WFYT+GQ + + L + +V KD + N+V+VSRNYY D++R F G ++
Sbjct: 277 WFYTLGQRKGIYLSGGPW-FVSRKDPDANVVYVSRNYYDEDRRRDSFVCGGFNWIA---L 332
Query: 145 EKISQLHSVF---------YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
E++ +F Y C T+E GGE A V L +DQGLAAGQFA FYQ
Sbjct: 333 ERMDPARPLFCKVRHGPNMYRC--TMEELP-GGE--ARVVLEGNDQGLAAGQFACFYQDG 387
Query: 196 RCLGSGVIL--EAWDDQG 211
CLGS VIL + DD+G
Sbjct: 388 VCLGSAVILQGQCCDDRG 405
>gi|302828090|ref|XP_002945612.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f.
nagariensis]
gi|300268427|gb|EFJ52607.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f.
nagariensis]
Length = 402
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 118/272 (43%), Gaps = 64/272 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPS----------VKDQTYFLSHLSQAQLRR 50
+D FD VASGHYA V + P+ VKDQTYFL++LS QL R
Sbjct: 117 LDRTYGAAFDRVASGHYARV--ERVPRRSSPAEVRLLLTPDAVKDQTYFLANLSPRQLSR 174
Query: 51 LIFHLVLYPRLTI-------------------------------------PMEGIILEAE 73
++F L + + G ILEAE
Sbjct: 175 VMFPLGCLTKSQVRKLAAAADLANKNRKDSQGICFLGKVKFHEFVREHLGEWPGPILEAE 234
Query: 74 TGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
TG L H+G+WFYT+GQ + L + YVV KD N V VSR YY DK+R+ F
Sbjct: 235 TGQPLGLHQGYWFYTVGQRGGIKLPGGPW-YVVAKDTLRNAVLVSRQYYDADKQRNTFTC 293
Query: 134 GSLKLL-SGLPPEKISQLHSVF---------YNCSLTIEHCED----GGEDIAVVQLSED 179
G L + P+ + +F Y C L + G + V L+++
Sbjct: 294 GPFNWLDAATRPDPDPRAGPLFVKVRHGPSMYCCELRLHDARGDGSYGNDSYGTVVLAQN 353
Query: 180 DQGLAAGQFAAFYQGRRCLGSGVILEAWDDQG 211
DQGLAAGQ+A FYQ RCLG VI E D G
Sbjct: 354 DQGLAAGQYAVFYQDGRCLGCAVIQETVDVGG 385
>gi|303284375|ref|XP_003061478.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456808|gb|EEH54108.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 384
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 110/250 (44%), Gaps = 69/250 (27%)
Query: 9 FDYVASGHYANVVHSSADHKDKPSV----------------KDQTYFLSHLSQAQLRRLI 52
F VASGHYA + KDQTYFL+ LSQAQL L
Sbjct: 121 FARVASGHYAALERPGGPFGGAGDDADADGKVKLVMSGDAHKDQTYFLAALSQAQLEGLS 180
Query: 53 FHLVLYPRLTI-------------------------------------PMEGIILEAETG 75
F + P+ I G I+E ETG
Sbjct: 181 FPIGGLPKAEIRDIARRAGLPNANRKDSQGICFLGKVKFSEFVAEHLGERPGKIVEIETG 240
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+ +HRGFWF+TIGQ LGL + YV KD + NIVF++++YY+ DK+R F
Sbjct: 241 LEIGEHRGFWFHTIGQRSGLGLSGGPW-YVCGKDAKRNIVFITKDYYAGDKERRAFRL-Y 298
Query: 136 LKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
K+ G Y C+L + +GG V L +DQGLAAGQFA FY GR
Sbjct: 299 CKVRHG----------ERRYRCTLKFDPDGEGGR----VVLDANDQGLAAGQFAVFYDGR 344
Query: 196 RCLGSGVILE 205
CLGSGVI E
Sbjct: 345 ECLGSGVIAE 354
>gi|385811327|ref|YP_005847723.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Ignavibacterium album JCM 16511]
gi|383803375|gb|AFH50455.1| Putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Ignavibacterium album JCM 16511]
Length = 349
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 119/242 (49%), Gaps = 53/242 (21%)
Query: 9 FDYVASGHYANVVHSSADHKDKPS---VKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-- 63
F+ VASGHYA V S + K S +KDQTYFL++L+Q QL R +F + + + I
Sbjct: 116 FEKVASGHYARVEKSDNKYLLKTSPDPIKDQTYFLAYLTQEQLSRALFPIGKFTKKQIRA 175
Query: 64 -----------------------------------PMEGIILEAETGDFLEKHRGFWFYT 88
+ G I+E ET KH+G++FYT
Sbjct: 176 LAKNYQLPNMERKDSQGICFLGRISFNEFIKHHLGELPGAIVEMETNQIRGKHKGYYFYT 235
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE--- 145
IGQ LGL + YVV+KD++NNI+++S+ Y ++ R F ++ P
Sbjct: 236 IGQRSGLGLGGGPW-YVVKKDVKNNIIYISKQDYH-NRARKEFAVTKFNWIADKPTSGEN 293
Query: 146 -KISQLHSV-FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
K+ H FYNC L E+ ++ G V LS++DQG+A GQFA FY+ CLG +I
Sbjct: 294 LKVKIRHGAKFYNCVL--EYEDNNGR----VILSQEDQGIAPGQFAVFYKDDVCLGGSII 347
Query: 204 LE 205
E
Sbjct: 348 SE 349
>gi|406968333|gb|EKD93203.1| hypothetical protein ACD_28C00207G0002 [uncultured bacterium]
Length = 355
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 120/244 (49%), Gaps = 54/244 (22%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRL---- 61
F+ VA+GHYA V K + KDQTYFL+HLSQ+QL R +F + Y +
Sbjct: 116 FEKVATGHYARVEEKEGVFFLKTAKDTWKDQTYFLAHLSQSQLSRALFPIGDYLKSEVRE 175
Query: 62 ----------------------TIPM-----------EGIILEAETGDFLEKHRGFWFYT 88
+IP +G ++E ETG L H+G+W+YT
Sbjct: 176 LAKKYELPNADRKDSQGICFLGSIPFDEFVKHHLGEKQGELVEFETGKVLGCHQGYWYYT 235
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP----- 143
IGQ + +GL + +VV KDI N VF+S +Y+ DK R+ F A +L +SG P
Sbjct: 236 IGQRKGIGLSGGPW-FVVSKDIVTNRVFISNHYHVEDKPRNCFRAHALHWISGEPVHTQA 294
Query: 144 --PEKISQLHS-VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
P K+ H Y+ +L +G E++ V+L DQGLA GQFA FY+G C G
Sbjct: 295 PLPLKVKIRHGQQRYDATLKW----NGNEEVQ-VELVGSDQGLAPGQFAVFYEGEICRGI 349
Query: 201 GVIL 204
I+
Sbjct: 350 ATIV 353
>gi|159469071|ref|XP_001692691.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277944|gb|EDP03710.1| predicted protein [Chlamydomonas reinhardtii]
Length = 365
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 112/244 (45%), Gaps = 50/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADHK------DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRL 61
EFD VASGHYA V ++A + +VKDQTYFLS L+ QL R++F L +
Sbjct: 124 EFDRVASGHYARVAAAAAVEEEVRLLLTPDAVKDQTYFLSGLTPDQLSRVMFPLGCLTKS 183
Query: 62 TI-------------------------------------PMEGIILEAETGDFLEKHRGF 84
+ G +LEAETG L H G+
Sbjct: 184 QVRKLAAAADLANKNRKDSQGICFLGKVRFSEFVKEHLGEWHGPLLEAETGRPLGTHAGY 243
Query: 85 WFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFD--KKRHLFHAGSLKLL-SG 141
WFYT+GQ + L + YVV KD N+V VSR+YY + K R+ F G L
Sbjct: 244 WFYTVGQRGGIKLPGGPW-YVVAKDTARNVVLVSRSYYDCEGGKARNAFTCGPFNWLHPR 302
Query: 142 LPPEKISQLH--SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
L P + + Y C+L + H G V L +DQGLA GQ+A FYQG CLG
Sbjct: 303 LRPRLGAGVRHGPNMYRCTLRL-HDGSGAPLYGTVVLEANDQGLAPGQYAVFYQGGTCLG 361
Query: 200 SGVI 203
S VI
Sbjct: 362 SAVI 365
>gi|412987882|emb|CCO19278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bathycoccus prasinos]
Length = 548
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 114/251 (45%), Gaps = 56/251 (22%)
Query: 9 FDYVASGHYANVVHSSADHKDKPSV------KDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
FD +ASGHYA + D D V KDQTYFL+HLS QL++ +F + + PR
Sbjct: 297 FDRIASGHYAALERKEDDETDVKLVASGDARKDQTYFLAHLSSWQLQKAMFPIGGISKPR 356
Query: 61 LTIPME-----------------------------------GIILEAETGDFLEKHRGFW 85
+ E G I E E+G L H+GFW
Sbjct: 357 IREIAENLSLVNADRKDSQGICFLGKVKFSEFIEEHLGTKPGEIREIESGQLLGTHKGFW 416
Query: 86 FYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYS--FDKKRHLFHAGSLKLLS 140
F+T+GQ Q L L + YV KD+E N+VF+SR Y+S +++R F L
Sbjct: 417 FHTVGQRQGLKLDKRAHEGPWYVHSKDVEKNVVFISRAYHSEENERERDSFECEDLSWCR 476
Query: 141 GLPPEKISQL------HSVFYNCSLTIEHCEDGGEDIAVVQLSED--DQGLAAGQFAAFY 192
+++S++ H Y L +E + +++ D DQGLA GQ+A FY
Sbjct: 477 DSDADQLSRIERCKVRHGESYYRVLHVEPTTPNTAENQKLKIKIDGKDQGLAKGQYAVFY 536
Query: 193 QGRRCLGSGVI 203
G CLG GVI
Sbjct: 537 GGSECLGCGVI 547
>gi|307103568|gb|EFN51827.1| hypothetical protein CHLNCDRAFT_139672 [Chlorella variabilis]
Length = 417
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 112/256 (43%), Gaps = 58/256 (22%)
Query: 1 MDAISSMEFDYVASGHYANV-----VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
+ A + FD +ASGHYA + ++ ++KDQTYFL+HLSQ QL R +F L
Sbjct: 165 LSAQAIGTFDRIASGHYARLERPGTAAAARLALTPDAIKDQTYFLAHLSQHQLARALFPL 224
Query: 56 --------------VLYPRLTIP----------------------------MEGIILEAE 73
L +P G I+E E
Sbjct: 225 GHLTKPQARGSSVRALAAAADLPNKARKDSQGICFLGKVKFNEFIRKHLGEWPGPIVEEE 284
Query: 74 TGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ + + H GFWF+T+GQ + + L + YV K + N+V+VSR Y+ DK R+ F
Sbjct: 285 SNEVVGFHHGFWFHTVGQRKGIALSGGPW-YVTRKHPDTNVVYVSRQYHESDKLRNSFSC 343
Query: 134 GSLKLLSGLPPEKISQLHSV------FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
S P+ L+ Y C L++E G V L +DQGLAAGQ
Sbjct: 344 HSFSWCGVARPDPSRLLYCKVRHGPHMYACQLSLEPGGGAGH----VVLGGNDQGLAAGQ 399
Query: 188 FAAFYQGRRCLGSGVI 203
+A FYQ CLGS VI
Sbjct: 400 YAVFYQDGACLGSAVI 415
>gi|386854084|ref|YP_006203369.1| TRNA-specific 2-thiouridylase MnmA [Borrelia garinii BgVir]
gi|365194118|gb|AEW69016.1| MnmA [Borrelia garinii BgVir]
Length = 355
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYARIQIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKLIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + +H F + ++G+P +
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKHKFLVHEIHWINGMPSD-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ D G++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLRLITNNLIEICLNKKDHGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|408671291|ref|YP_006871362.1| tRNA-specific 2-thiouridylase MnmA [Borrelia garinii NMJW1]
gi|407241113|gb|AFT83996.1| tRNA-specific 2-thiouridylase MnmA [Borrelia garinii NMJW1]
Length = 355
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYARIQIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKLIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + +H F + ++G+P +
Sbjct: 236 TVGQRRGIKLGNGPW-FVIEKDLEKNIIYISHNENYLKQAKHKFLVHEIHWINGMPSD-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ D G++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLRLITNNLIEICLNKKDHGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|216263504|ref|ZP_03435499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia afzelii ACA-1]
gi|215980348|gb|EEC21169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia afzelii ACA-1]
Length = 355
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 65/251 (25%)
Query: 8 EFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
++D V +GHYA + + D K K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKI--QTKDKKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 56 --VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFW 85
+ + +P +G I+E ETG + H G+W
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGTHNGYW 233
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS--RNYYSFDKKRHLFHAGSLKLLSGLP 143
F+T+GQ + + L + +V+EKD+E NI+++S NY K++ L H + ++G P
Sbjct: 234 FFTVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYSKQAKRKFLVH--EIHWINGTP 290
Query: 144 PEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ F N + I H E +++ + L++ D G++ GQFA FY+
Sbjct: 291 SD--------FENFKIKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKNT 342
Query: 196 RCLGSGVILEA 206
CLG I +
Sbjct: 343 ECLGGAKIFKV 353
>gi|111115515|ref|YP_710133.1| tRNA-specific 2-thiouridylase MnmA [Borrelia afzelii PKo]
gi|384207171|ref|YP_005592893.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Borrelia afzelii PKo]
gi|122956331|sp|Q0SMH1.1|MNMA_BORAP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|110890789|gb|ABH01957.1| hypothetical protein BAPKO_0726 [Borrelia afzelii PKo]
gi|342857055|gb|AEL69903.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia afzelii PKo]
Length = 355
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 65/253 (25%)
Query: 8 EFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
++D V +GHYA + + D K K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKI--QTKDKKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 56 --VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFW 85
+ + +P +G I+E ETG + H G+W
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGTHNGYW 233
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS--RNYYSFDKKRHLFHAGSLKLLSGLP 143
F+T+GQ + + L + +V+EKD+E NI+++S NY K++ L H + ++G P
Sbjct: 234 FFTVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYSKQAKRKFLVH--EIHWINGTP 290
Query: 144 PEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ F N + I H E +++ + L++ D G++ GQFA FY+
Sbjct: 291 SD--------FENFKIKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKNT 342
Query: 196 RCLGSGVILEAWD 208
CLG I + +
Sbjct: 343 ECLGGAKIFKVME 355
>gi|343127983|ref|YP_004777914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia bissettii DN127]
gi|342222671|gb|AEL18849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia bissettii DN127]
Length = 355
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQIKEGNFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + + F + ++ +P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDIP---- 290
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
S F N + I H E ++ + L++ D GL+ GQFA FY+ +CLG
Sbjct: 291 ----SNFENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDNGLSPGQFAIFYKNTKCLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|149197386|ref|ZP_01874437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lentisphaera araneosa HTCC2155]
gi|149139404|gb|EDM27806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lentisphaera araneosa HTCC2155]
Length = 353
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 109/243 (44%), Gaps = 43/243 (17%)
Query: 2 DAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
DAI +D VA+GHYA V + + VKDQTYFLS LSQAQL R +F +
Sbjct: 111 DAIDET-YDKVATGHYAQVQENEEGIFELLRAPDPVKDQTYFLSSLSQAQLSRALFPIGS 169
Query: 56 -------------------------------VLYPRLTI----PMEGIILEAETGDFLEK 80
+ YP +G I+E ET + +
Sbjct: 170 LMKSRVRELAEEYDLPNKVRKDSQGICFLGKISYPDFVRFHLGEKQGDIIEIETDEKKGE 229
Query: 81 HRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
H+G WF+TIGQ LGL + YVV+KD+ NIV++S D+ R ++ S
Sbjct: 230 HKGVWFHTIGQRSGLGLSGGPW-YVVKKDLATNIVYISHKNGLEDQLRDEVTVNTVHWTS 288
Query: 141 GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
G P+ + + + L D GE ++L+E D+G+A GQ FY CLG
Sbjct: 289 GKFPKNTNLKVKLRHGPQLVEARIMDLGESRVFIKLAEKDKGIAPGQSCIFYDDLICLGR 348
Query: 201 GVI 203
GVI
Sbjct: 349 GVI 351
>gi|119953460|ref|YP_945669.1| tRNA-specific 2-thiouridylase MnmA [Borrelia turicatae 91E135]
gi|254811445|sp|A1R0A7.1|MNMA_BORT9 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|119862231|gb|AAX17999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia turicatae 91E135]
Length = 354
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 54/244 (22%)
Query: 9 FDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
+D + +GHYA + + DH + K +KDQ+YFLSHLS+ Q+ +L F L
Sbjct: 117 YDLIVTGHYAKI-ENKNDHYILKQAKDKIKDQSYFLSHLSRKQISKLHFPLGDLLKTEIR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ ++ +P ++G I+E ETG L H G+WF+
Sbjct: 176 QIAQKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSR--NYYSFDKKRHLFHAGSL---KLLSGL 142
TIGQ + + L + + +V EKDI+NNI+++S NY K++ L H + L +G
Sbjct: 236 TIGQRKGIKLSHGPW-FVTEKDIQNNIIYISNSINYLKQGKQQFLVHKTNWINKPLNNGD 294
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
KI IE ++ DI V L E D G++ GQF FYQ CLG
Sbjct: 295 LSAKIRHGEK---KIKCKIEMLKN---DIIKVDLEEKDYGISPGQFCIFYQEDECLGGAK 348
Query: 203 ILEA 206
IL+
Sbjct: 349 ILKT 352
>gi|224532386|ref|ZP_03673016.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23]
gi|225548926|ref|ZP_03769903.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 94a]
gi|225550036|ref|ZP_03770997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 118a]
gi|224512693|gb|EEF83064.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23]
gi|225369495|gb|EEG98947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 118a]
gi|225370529|gb|EEG99965.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 94a]
Length = 355
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|224532293|ref|ZP_03672925.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia valaisiana VS116]
gi|224511758|gb|EEF82164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia valaisiana VS116]
Length = 355
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 114/248 (45%), Gaps = 61/248 (24%)
Query: 8 EFDYVASGHYANV-----VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
++D V +GHYA + + KDK +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQAKEKIFLLKQAKDK--IKDQSYFLSHLSQKQMSKLCFPLGTLLKSE 173
Query: 56 --VLYPRLTIPME----------------------------GIILEAETGDFLEKHRGFW 85
+ + +P + G I+E ETG + H G+W
Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEEKGNIIEKETGKIMGIHNGYW 233
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
F+T+GQ + + L + +V+EKD+E NI++VS N + + F + ++ +P +
Sbjct: 234 FFTVGQRRGIKLSNGPW-FVIEKDLEKNIIYVSHNENYLKQAKRKFLVHEIHWINDIPQD 292
Query: 146 KISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
F N + I H E ++ + L+++D G++ GQFA FY+ +C
Sbjct: 293 --------FKNFKIKIRHGEKKYSCKLKLISNNLIEISLNKEDHGISPGQFAIFYKNTKC 344
Query: 198 LGSGVILE 205
LG I +
Sbjct: 345 LGGAKIFK 352
>gi|195941501|ref|ZP_03086883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 80a]
Length = 355
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRRDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|216264880|ref|ZP_03436872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 156a]
gi|215981353|gb|EEC22160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 156a]
Length = 355
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD++ NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINNTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|15595027|ref|NP_212816.1| tRNA-specific 2-thiouridylase MnmA [Borrelia burgdorferi B31]
gi|223889488|ref|ZP_03624074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 64b]
gi|226321380|ref|ZP_03796907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi Bol26]
gi|8134738|sp|O51625.1|MNMA_BORBU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|2688619|gb|AAC67035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi B31]
gi|223885174|gb|EEF56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 64b]
gi|226233176|gb|EEH31928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi Bol26]
Length = 355
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|224533363|ref|ZP_03673957.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a]
gi|224513528|gb|EEF83885.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a]
Length = 355
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|226320481|ref|ZP_03796047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 29805]
gi|226234123|gb|EEH32838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 29805]
Length = 355
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD++ NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|218249186|ref|YP_002375182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi ZS7]
gi|226704767|sp|B7J2N7.1|MNMA_BORBZ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|218164374|gb|ACK74435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi ZS7]
Length = 355
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQISKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|387827582|ref|YP_005806864.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi N40]
gi|312149442|gb|ADQ29513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi N40]
Length = 355
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD++ NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|449019849|dbj|BAM83251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cyanidioschyzon merolae strain 10D]
Length = 639
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 107/255 (41%), Gaps = 65/255 (25%)
Query: 9 FDYVASGHYANVV-----------HSSADHKDKPS-VKDQTYF---------------LS 41
+ VASGHYA VV H+ A P VKDQTYF +
Sbjct: 367 YALVASGHYARVVTMRHTERGGETHAVAQLFCSPDIVKDQTYFLSQLSQQQLLKATFPIG 426
Query: 42 HLSQAQLRRLIFHLVLYPRLTIP-----------------------MEGIILEAETGDFL 78
L+++ +RRL P P G I+EAE+G FL
Sbjct: 427 DLTKSAVRRLARERYNLPNCDRPDSQGICFLGKLKFEQFLEHYLGTWAGPIMEAESGRFL 486
Query: 79 EKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
HRGFWFYTIGQ + L L + YVV KD+ENNIV VSR + F ++
Sbjct: 487 GTHRGFWFYTIGQRKGLALPGGPW-YVVGKDLENNIVLVSRERSQCNVTCRSFIVENVNW 545
Query: 139 LSGLPPEKISQLHSVFYNCSLTIE----------HCEDGGEDIAVVQLSEDDQGLAAGQF 188
+ + S + C + I HC + ++ L E + G+A GQF
Sbjct: 546 IGW----EHSNTNEEPMRCRVKIRHGPRSVSAEVHCLEPKNQSWIIALDEPESGIAPGQF 601
Query: 189 AAFYQGRRCLGSGVI 203
A FY+ +CLG GVI
Sbjct: 602 AVFYRENQCLGGGVI 616
>gi|187918538|ref|YP_001884101.1| tRNA-specific 2-thiouridylase MnmA [Borrelia hermsii DAH]
gi|119861386|gb|AAX17181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia hermsii DAH]
Length = 357
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 42/238 (17%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL---------V 56
+D + +GHYA + + + + + K +KDQ+YFLSHLS+ Q+ +L F L
Sbjct: 120 YDLIVTGHYAKIENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTEIRQ 179
Query: 57 LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFYT 88
+ ++ +P ++G I+E ETG L H G+WF+T
Sbjct: 180 IAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYWFFT 239
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + + L + + +V EKDI+NNI+++S + + +H F ++ P I
Sbjct: 240 IGQRKGIKLSHGPW-FVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWINK-PVNNID 297
Query: 149 QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206
+ + E DI V L E D G++ GQF FYQ CLG IL+
Sbjct: 298 LSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQEDECLGGAQILQT 355
>gi|205814822|sp|B2S125.2|MNMA_BORHD RecName: Full=tRNA-specific 2-thiouridylase MnmA
Length = 354
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 42/238 (17%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL---------V 56
+D + +GHYA + + + + + K +KDQ+YFLSHLS+ Q+ +L F L
Sbjct: 117 YDLIVTGHYAKIENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTEIRQ 176
Query: 57 LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFYT 88
+ ++ +P ++G I+E ETG L H G+WF+T
Sbjct: 177 IAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYWFFT 236
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + + L + + +V EKDI+NNI+++S + + +H F ++ P I
Sbjct: 237 IGQRKGIKLSHGPW-FVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWINK-PVNNID 294
Query: 149 QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206
+ + E DI V L E D G++ GQF FYQ CLG IL+
Sbjct: 295 LSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQEDECLGGAQILQT 352
>gi|225551719|ref|ZP_03772662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia sp. SV1]
gi|225371514|gb|EEH00941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia sp. SV1]
Length = 355
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 51/243 (20%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ QL +L F L
Sbjct: 116 QYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQLSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE-- 145
T GQ + + L + +V+EKD+E NI+++S N + + F + ++ P
Sbjct: 236 TAGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTNFE 294
Query: 146 --KISQLH-SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
KI H Y+C L + ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 295 NFKIKIRHGKKKYSCKLQLI-----TNNLMEISLNKKDQGISPGQFAIFYKNTECLGGAK 349
Query: 203 ILE 205
I +
Sbjct: 350 IFK 352
>gi|51598937|ref|YP_073125.1| tRNA-specific 2-thiouridylase MnmA [Borrelia garinii PBi]
gi|73920033|sp|Q660I8.1|MNMA_BORGA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|51573508|gb|AAU07533.1| conserved hypothetical protein [Borrelia garinii PBi]
Length = 355
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 111/246 (45%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYARIQIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIVEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + + F + ++G+P +
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINGMPSD-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ D G++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLRLITNNLIEIFLNKKDHGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|410679467|ref|YP_006931869.1| tRNA-specific 2-thiouridylase MnmA [Borrelia afzelii HLJ01]
gi|408536855|gb|AFU74986.1| tRNA-specific 2-thiouridylase MnmA [Borrelia afzelii HLJ01]
Length = 355
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 65/251 (25%)
Query: 8 EFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
++D V +GHYA + + D K K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKI--QTKDKKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 56 --VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFW 85
+ + +P +G I+E ETG + H G+W
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYDEFIKYHLGEKKGNIIEKETGKIIGTHNGYW 233
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS--RNYYSFDKKRHLFHAGSLKLLSGLP 143
F+T+GQ + + L + +V+EKD+E NI+++S NY K++ L H + ++ P
Sbjct: 234 FFTVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYSKQAKRKFLVH--EIHWINDTP 290
Query: 144 PEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ F N + I H E +++ + L++ D G++ GQFA FY+
Sbjct: 291 SD--------FENFKIKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKNT 342
Query: 196 RCLGSGVILEA 206
CLG I +
Sbjct: 343 ECLGGAKIFKV 353
>gi|203288114|ref|YP_002223129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia recurrentis A1]
gi|229486333|sp|B5RQ24.1|MNMA_BORRA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|201085334|gb|ACH94908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia recurrentis A1]
Length = 354
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 48/242 (19%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D + +GHYA + + + + + K +KDQ+YFLSHLS+ Q+ +L F L
Sbjct: 116 KYDLIVTGHYAKIENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSEIR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P ++G I+E ETG L H G+WF+
Sbjct: 176 QIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSR--NYYSFDKKRHLFHAGSLKLLSGLPPE 145
TIGQ + + L + + +V EKDI+NNI+++S NY K++ L H + P
Sbjct: 236 TIGQRKGIKLSHGPW-FVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWI----NKPL 290
Query: 146 KISQLHSVFYNCSLTIE-HCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
K + L + + I+ E ++I V L E D G++ GQF FY+ CLG IL
Sbjct: 291 KNNNLSAKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYKEDECLGGAKIL 350
Query: 205 EA 206
+
Sbjct: 351 KT 352
>gi|405963639|gb|EKC29197.1| tRNA-specific 2-thiouridylase mnmA [Crassostrea gigas]
Length = 358
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 111/251 (44%), Gaps = 71/251 (28%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI- 63
+FD++ASGHYA H+ D VKDQTYFL+ L++AQL++ +F + + +
Sbjct: 115 QFDFIASGHYAKTEHADNDTFLMTSADPVKDQTYFLAALNRAQLKKCLFPIGDMTKAQVR 174
Query: 64 ------------------------------------PMEGIILEAETGDFLEKHRGFWFY 87
G I++ ETG L +HRG+W++
Sbjct: 175 DYAHAQKLCNAKRKDSQGICFLGKIKFSDFLKHHFGEKTGDIVQMETGAVLGQHRGYWYF 234
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSR-------NYYSFDKKRHLFHAGSLKLLS 140
TIGQ + LGL + YVV+KD+ N V+VS N D+ L+ +L L+
Sbjct: 235 TIGQRRGLGLGSGPW-YVVKKDVLGNRVYVSNKIVSQKVNTIKIDQCNWLYSKEALLQLT 293
Query: 141 GL-----PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
PP S L + C L GG D G+A GQFA FY G+
Sbjct: 294 SCGKPLQPPLAQSLLPKEGW-CHLL------GG-----------DHGVAMGQFAVFYSGK 335
Query: 196 RCLGSGVILEA 206
CLGSGVI A
Sbjct: 336 YCLGSGVIAHA 346
>gi|221217912|ref|ZP_03589379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 72a]
gi|221192218|gb|EEE18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi 72a]
Length = 355
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+ NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLGKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|387826318|ref|YP_005805771.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi JD1]
gi|312148210|gb|ADQ30869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia burgdorferi JD1]
Length = 355
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD++ NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|203284580|ref|YP_002222320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia duttonii Ly]
gi|229486337|sp|B5RMM8.1|MNMA_BORDL RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|201084023|gb|ACH93614.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia duttonii Ly]
Length = 354
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 48/242 (19%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D + +GHYA + + + + + K +KDQ+YFLSHLS+ Q+ +L F L
Sbjct: 116 KYDLIVTGHYAKIENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSEIR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P ++G I+E ETG L H G+WF+
Sbjct: 176 QIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSR--NYYSFDKKRHLFHAGSLKLLSGLPPE 145
TIGQ + + L + + +V EKDI+NNI+++S NY K++ L H + + L +
Sbjct: 236 TIGQRKGIKLSHGPW-FVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNW-INKPLKND 293
Query: 146 KIS-QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+S ++ IE +D +I V L E D G++ GQF FY+ CLG IL
Sbjct: 294 NLSAKIRHGEKKIKCKIETLKD---EIIRVNLEEKDYGISPGQFCIFYKEDECLGGAKIL 350
Query: 205 EA 206
+
Sbjct: 351 KT 352
>gi|428169961|gb|EKX38890.1| hypothetical protein GUITHDRAFT_76798 [Guillardia theta CCMP2712]
Length = 431
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 111/255 (43%), Gaps = 63/255 (24%)
Query: 9 FDYVASGHYANVVHSSADHKDKPS--------VKDQTYFLSHLSQAQLRRLIFHLVLYPR 60
F VASGHYA H D +PS VKDQTYFL +L Q QL+ +F + Y +
Sbjct: 159 FSRVASGHYAVSCHD--DVGTRPSRLMMSPDKVKDQTYFLCNLRQDQLKHALFPIGGYTK 216
Query: 61 ---------LTIPME----------------------------GIILEAETGDFLEKHRG 83
+P + G +++ TG L +HRG
Sbjct: 217 EKVRELAREFNLPTQRRKDSQGICFLGKLKFEDFVGHHLGEDPGPVIDFHTGRELGEHRG 276
Query: 84 FWFYTIGQHQELG-----LLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
WFYTIGQ + LG + ++ +V KD E N+++VS Y + R F +
Sbjct: 277 LWFYTIGQRKGLGSATRKVTHLGPWFVAGKDRERNMLYVSNQYDVIEGPRRSFDVEQINW 336
Query: 139 LSGLPPE------KISQLHSV-FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
++G PE +I H ++ LT+ + G V L D GLA GQ+AA
Sbjct: 337 MAGSLPEDDALRLRIKTRHGPNIHDGLLTLSQGKLSGR----VSLDGRDSGLAPGQWAAL 392
Query: 192 YQGRRCLGSGVILEA 206
Y G C+G G+I ++
Sbjct: 393 YDGEECIGGGMIADS 407
>gi|219684476|ref|ZP_03539420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia garinii PBr]
gi|219672465|gb|EED29518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia garinii PBr]
Length = 355
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYARIQIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLCFPLGTLFKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIVEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD++ NI+++S N + + F + ++G+P +
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINGMPSD-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ D G++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLRLITNNLIEICLNKKDHGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>gi|255086163|ref|XP_002509048.1| predicted protein [Micromonas sp. RCC299]
gi|226524326|gb|ACO70306.1| predicted protein [Micromonas sp. RCC299]
Length = 478
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 84/196 (42%), Gaps = 60/196 (30%)
Query: 8 EFDYVASGHYANV-----VHSSADHKDK-----------------PSVKDQTYFLSHLSQ 45
EF VASGHYA + + + H D + KDQTYFL+HLSQ
Sbjct: 135 EFHRVASGHYAAMDRVQGILADTLHGDDGMNGTSRRHPCRLIMSGDARKDQTYFLAHLSQ 194
Query: 46 AQLRRLIFHLVLYPRLTI-------------------------------------PMEGI 68
QL L F + P+ I G
Sbjct: 195 RQLAALTFPIGGLPKTQIREIARSAGLPNAERKDSQGICFLGKVKFSEFVAEHLGERPGA 254
Query: 69 ILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKR 128
I+E ETG L H GFWF+TIGQ LGL + YV KD+ N+V+V+R+YYS DK+R
Sbjct: 255 IVELETGTRLGTHSGFWFHTIGQRSGLGLSGGPW-YVAAKDVPGNVVYVTRDYYSVDKER 313
Query: 129 HLFHAGSLKLLSGLPP 144
+ F G LSG P
Sbjct: 314 NTFRVGEFSWLSGTAP 329
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 155 YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
Y C+L + DG D V + DDQGLAAGQFA FY R CLG GVILE
Sbjct: 400 YRCTLRFDI--DG--DAGTVVIEADDQGLAAGQFAVFYDRRVCLGCGVILE 446
>gi|224534479|ref|ZP_03675055.1| tRNA-methyltransferase [Borrelia spielmanii A14S]
gi|224514156|gb|EEF84474.1| tRNA-methyltransferase [Borrelia spielmanii A14S]
Length = 355
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 61/249 (24%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQKKDKKIFLKQAKDKIKDQSYFLSHLSQNQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKSINLPNKNRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGRIIGIHDGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVS--RNYYSFDKKRHLFHAGSLKLLSGLPPE 145
T+GQ + + L + +V+EKD+E NI+++S NY K++ L H + ++G P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYSKQAKRKFLVH--EIHWINGTPLN 292
Query: 146 KISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
F N + I H E ++ + L++ D G++ GQFA FY+ C
Sbjct: 293 --------FENFKIKIRHGEKKYSCKLKLITNNLIEIYLNKKDCGISPGQFAIFYKNTEC 344
Query: 198 LGSGVILEA 206
LG I +
Sbjct: 345 LGGAKIFKV 353
>gi|219126278|ref|XP_002183388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405144|gb|EEC45088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 368
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 118/263 (44%), Gaps = 61/263 (23%)
Query: 2 DAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+AI EFD+VASGHYA +V + + +KDQ+YFL L+Q QL+R++F
Sbjct: 108 EAIDQREFDFVASGHYAQLVKDTETGSMRLLRAPDPIKDQSYFLCTLTQDQLQRVLFPIG 167
Query: 54 HL------------VLYPRLTIPMEGI----------------------ILEAETGDFLE 79
HL +L RL +G+ I++A TGD +
Sbjct: 168 HLQKSQVRDLADEFILPNRLRPDSQGLCFLGKVKFDEFLAVYLGTRPGPIVDAGTGDVVG 227
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR------YVVEKDIENNIVFVSRNYYS--FDKKRHLF 131
+H G W++T+GQ + +G + YVV KD ++V+ S Y F R F
Sbjct: 228 QHHGVWYHTVGQRKGIGRVLDPLATSRGPWYVVAKDPGKDVVYCSNQYDEDIFTASRSEF 287
Query: 132 HAGSLKLLSGLPPEKISQ------LHSVFYNCSL---TIEHCEDGGEDIAVVQLSEDDQG 182
++ ++G P + + + + + L T+ GE V+L D G
Sbjct: 288 AVENIHWIAGQAPPNLLKGDGGRFVMKIRHGPDLVKGTLRLTNTAGE--GDVKLDSKDGG 345
Query: 183 LAAGQFAAFYQGRRCLGSGVILE 205
LA GQ+ FY+ CLG+GVI E
Sbjct: 346 LAPGQYVVFYKDEECLGAGVISE 368
>gi|299470175|emb|CBN78203.1| tRNA-methyltransferase [Ectocarpus siliculosus]
Length = 478
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 124/307 (40%), Gaps = 113/307 (36%)
Query: 9 FDYVASGHYANVVHS--SADHKDKPS---------------------------------- 32
F +VA+GHYA + HS S D PS
Sbjct: 112 FRHVATGHYARLEHSGGSDDANATPSDRSAAAAAAAAGTEEPPVRVAAGSDRGRVRLLLS 171
Query: 33 ---VKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI---------PME-------------- 66
VKDQTYFL L+Q QLR+ +F L +Y + I P +
Sbjct: 172 PDAVKDQTYFLCALTQDQLRKALFPLGVYTKDQIRELAESYDLPTKHRKDSQGICFLGKL 231
Query: 67 --------------GIILEAETGDFLEKHRGFWFYTIGQHQELG------LLYIVYRYVV 106
G I++ +TG + +H+G WF+TIGQ + +G ++ + YV
Sbjct: 232 KFDEFLQHYLGTSPGAIVD-QTGRHIGEHKGLWFHTIGQRKGVGPGLVPGVVNLGPWYVA 290
Query: 107 EKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSV-----------FY 155
+KD+E N++ V+ + + R +F +L+ +SG PP ++++ S+
Sbjct: 291 DKDMERNVLVVTNDREAIASPREVFRVEALQWISGRPPAELARDRSMRLRVKTRHGPQMR 350
Query: 156 NCSLTI--------EHCEDGGEDIAV-----------VQLSEDDQGLAAGQFAAFYQGRR 196
+C L + GG + V V L D LA GQFAAFY G
Sbjct: 351 DCLLRLVPEVAPGDSGGRAGGAEATVEDRVGSPTRGYVNLDSKDSALAPGQFAAFYLGGE 410
Query: 197 CLGSGVI 203
C+GSGV+
Sbjct: 411 CVGSGVM 417
>gi|224010034|ref|XP_002293975.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335]
gi|220970647|gb|EED88984.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335]
Length = 392
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 114/272 (41%), Gaps = 77/272 (28%)
Query: 5 SSMEFDYVASGHYANVVHSSADHKDKPS------------VKDQTYFLSHLSQAQLRRLI 52
S M+FDYVASGHYA + D D S VKDQ+YFL L+Q QL ++I
Sbjct: 126 SGMDFDYVASGHYAQL----KDDDDTSSISQKRLFRAPDPVKDQSYFLCALTQKQLSKVI 181
Query: 53 FHLVLY--------------PRLTIP-----------------------MEGIILEAETG 75
F + Y P P G +++A G
Sbjct: 182 FPIGEYQKSEVRELATQFQLPNRNRPDSQGLCFLGKVRFDDFLASYLGDRPGDVVDALNG 241
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYR------YVVEKDIENNIVFVSRNY--YSFDKK 127
D + +H G W++T+GQ + +G + YVV KD E +IV+VS Y F +
Sbjct: 242 DVIGRHNGLWYHTVGQRKGIGKVMFPLATAKGPWYVVAKDQERDIVYVSNRYDEDDFAQA 301
Query: 128 RHLFHAGSLKLLSGLPPEKI---SQLHSVFYNCSL---------TIEHCEDGGEDIAVVQ 175
R F ++ L+G P H V + + T+ +DG + ++
Sbjct: 302 RSEFEVEDVRWLAGEAPMNAHHEKSWHEVRLDMKIRHGPRVVQGTLMLKDDGS--VGNIR 359
Query: 176 LSEDDQGLAAGQFAAFYQGR--RCLGSGVILE 205
L + D GLA GQ+ FYQ CLG+ VI E
Sbjct: 360 LDQKDGGLAPGQYVVFYQPDTLECLGAAVISE 391
>gi|383789677|ref|YP_005474251.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase with PP-loop ATPase domain
[Spirochaeta africana DSM 8902]
gi|383106211|gb|AFG36544.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase with PP-loop ATPase domain
[Spirochaeta africana DSM 8902]
Length = 464
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 107/256 (41%), Gaps = 77/256 (30%)
Query: 23 SSADHKDKP---------SVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI---------- 63
S+A D+P VKDQ+YFLSHLSQ QL++++F L Y + +
Sbjct: 201 SAAGAADQPLCLLRRAPDPVKDQSYFLSHLSQDQLQKILFPLGEYTKAQVRAFAQEFDLP 260
Query: 64 ---------------------------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELG 96
+G ++E ETG L +H+G+W++TIGQ Q +G
Sbjct: 261 TKDRKDSQGICFLGKIRYPEFVGHYLGEQDGPLVERETGTELGRHKGYWYFTIGQRQGIG 320
Query: 97 LLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP------------- 143
L + YVV KD+ NIV++S + + + KR F ++ P
Sbjct: 321 LGNGPW-YVVGKDVAQNIVYISHSSHRDEAKRSSFRIENMSWTVPAPDMAGFAAGGWGRQ 379
Query: 144 --------PEKISQLHSVFYNCSLTIEHCEDGGE--------DIAVVQLSEDDQGLAAGQ 187
++ + + N L + G E D +VQL DQG+A GQ
Sbjct: 380 ADESGADDAAGVADMPAASGNYPL-LTKLRHGPELTPCSLNPDTGLVQLQGGDQGVAPGQ 438
Query: 188 FAAFYQGRRCLGSGVI 203
F+ Y G CLG G I
Sbjct: 439 FSVLYAGEYCLGGGRI 454
>gi|262407475|ref|ZP_06084023.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
gi|294646866|ref|ZP_06724487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides ovatus SD CC 2a]
gi|294808901|ref|ZP_06767630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides xylanisolvens SD CC 1b]
gi|345512048|ref|ZP_08791587.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D1]
gi|229443508|gb|EEO49299.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D1]
gi|262354283|gb|EEZ03375.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
gi|292637811|gb|EFF56208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides ovatus SD CC 2a]
gi|294443943|gb|EFG12681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides xylanisolvens SD CC 1b]
Length = 355
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 109/244 (44%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
+FD+ A+GHYA + K VKDQT FL+ + Q+ +LIF +
Sbjct: 113 DFDFTATGHYATTLQRDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLIFPIGGLMKQEVR 172
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ R +P EG I+E ETG + HRG+WF+
Sbjct: 173 EIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEKEGAIVELETGKKVGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV+KDIE N ++VSR Y Y + + H FH + G
Sbjct: 233 TIGQRKGLGLSGGPW-FVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E + + + + T GE + + SE QG+A GQF Y + + C+GS
Sbjct: 292 EKE-VDIIFKIRHTPEFTKGKLIQEGEKLFHILSSEKLQGIAPGQFGVIYDEEVKVCVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEII 354
>gi|160883313|ref|ZP_02064316.1| hypothetical protein BACOVA_01282 [Bacteroides ovatus ATCC 8483]
gi|156111297|gb|EDO13042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides ovatus ATCC 8483]
Length = 355
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 105/244 (43%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV-------- 56
+FD+ A+GHYA + + K VKDQT FL+ + Q+ +L+F +
Sbjct: 113 DFDFTATGHYATTLQRNGKTWLGTAKDLVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG L HRG+WF+
Sbjct: 173 EIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAIIELETGKKLGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV+KDIE N ++VSR Y Y + + H FH + G
Sbjct: 233 TIGQRKGLGLSGGPW-FVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E I + + T GE + SE QG+A GQF Y + + C+GS
Sbjct: 292 EKE-IDITFKIRHTPDFTKGKLIQEGEKQFYILSSEKLQGIAPGQFGVIYDEEAKVCVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEII 354
>gi|293369466|ref|ZP_06616049.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides ovatus SD CMC 3f]
gi|336415998|ref|ZP_08596336.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus 3_8_47FAA]
gi|423287803|ref|ZP_17266654.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus
CL02T12C04]
gi|292635464|gb|EFF53973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides ovatus SD CMC 3f]
gi|335939901|gb|EGN01773.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus 3_8_47FAA]
gi|392671818|gb|EIY65289.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus
CL02T12C04]
Length = 355
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 105/244 (43%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV-------- 56
+FD+ A+GHYA + + K VKDQT FL+ + Q+ +L+F +
Sbjct: 113 DFDFTATGHYATTLQRNGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG L HRG+WF+
Sbjct: 173 EIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAIIELETGKKLGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV+KDIE N ++VSR Y Y + + H FH + G
Sbjct: 233 TIGQRKGLGLSGGPW-FVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E I + + T GE + SE QG+A GQF Y + + C+GS
Sbjct: 292 EKE-IDITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEEAKVCVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEII 354
>gi|237722379|ref|ZP_04552860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 2_2_4]
gi|299146396|ref|ZP_07039464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 3_1_23]
gi|229448189|gb|EEO53980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 2_2_4]
gi|298516887|gb|EFI40768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 3_1_23]
Length = 355
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 105/244 (43%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV-------- 56
+FD+ A+GHYA + + K VKDQT FL+ + Q+ +L+F +
Sbjct: 113 DFDFTATGHYATTLQRNGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG L HRG+WF+
Sbjct: 173 EIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAIIELETGKKLGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV+KDIE N ++VSR Y Y + + H FH + G
Sbjct: 233 TIGQRKGLGLSGGPW-FVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E I + + T GE + SE QG+A GQF Y + + C+GS
Sbjct: 292 EKE-IDITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEETKVCVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEIV 354
>gi|423212976|ref|ZP_17199505.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides xylanisolvens
CL03T12C04]
gi|392694232|gb|EIY87460.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides xylanisolvens
CL03T12C04]
Length = 355
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 107/244 (43%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
+FD+ A+GHYA + K VKDQT FL+ + Q+ +L+F +
Sbjct: 113 DFDFTATGHYATTLQCDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVR 172
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ R +P EG I+E ETG + HRG+WF+
Sbjct: 173 EIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEKEGAIVELETGKKVGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV+KDIE N ++VSR Y Y + + H FH + G
Sbjct: 233 TIGQRKGLGLSGGPW-FVVKKDIEENTIYVSRGYGVETQYGHEFRMHDFHFITDNPWKGQ 291
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E + + + T GE + SE QG+A GQF Y + + C+GS
Sbjct: 292 EKE-VDITFKIRHTPEFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEEAKVCVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEII 354
>gi|258648071|ref|ZP_05735540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella tannerae ATCC 51259]
gi|260851930|gb|EEX71799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella tannerae ATCC 51259]
Length = 364
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 105/245 (42%), Gaps = 56/245 (22%)
Query: 9 FDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
+D +A+GHYA A +KDQT FL+ L +R+LIF
Sbjct: 117 YDRIATGHYAQTETDEAGRVWLTTAPDPIKDQTDFLAQLDGFSVRKLIFPIGGLMKDEVR 176
Query: 54 ------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
HL L + EG+++E ETG+ + KH+G+WFY
Sbjct: 177 KIAQAAHLAPAKRKDSQGICFLGKISFSELARKYLGEKEGLVVEQETGNIIGKHKGYWFY 236
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LG + YVV KDI+ NI++VSR + + F ++ P E
Sbjct: 237 TIGQRKGLGFGGGPW-YVVRKDIKRNIIYVSRGFETKAAYGKAFRIEMPHFITYNPYEAD 295
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVV-----QLSEDD--QGLAAGQFAAFY--QGRRCL 198
Y + + H + +V +L D+ QG+A GQFA Y Q RCL
Sbjct: 296 GD-----YRVTFKVRHTPEFTPGRLLVRGGKYELHSDELIQGIAPGQFAVLYDEQAHRCL 350
Query: 199 GSGVI 203
GSG I
Sbjct: 351 GSGEI 355
>gi|255692219|ref|ZP_05415894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides finegoldii DSM 17565]
gi|260622083|gb|EEX44954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides finegoldii DSM 17565]
Length = 355
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 107/244 (43%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
EFD+ A+GHYA + K VKDQT FL+ + Q+ +L+F H V
Sbjct: 113 EFDFTATGHYATTIQRDGKVWLGTAKDPVKDQTDFLAQIDYLQISKLMFPIGGLTKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG+I+E ETG L H G+WF+
Sbjct: 173 EIADAAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEREGVIVELETGKKLGTHHGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV+KDI+ NI++VSR Y Y + + FH + + G
Sbjct: 233 TIGQRKGLGLSGGPW-FVVKKDIQENIIYVSRGYGVETQYGNEFQMRDFHFITDNIWKGQ 291
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E + + + T G++ + SE QG+A GQF Y + R C+GS
Sbjct: 292 DKE-VDITFKIRHTPEFTKGKLIMKGDNQFHILSSEKLQGIAPGQFGVIYDKEARICVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEII 354
>gi|423217826|ref|ZP_17204322.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides caccae
CL03T12C61]
gi|392627329|gb|EIY21364.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides caccae
CL03T12C61]
Length = 354
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 106/242 (43%), Gaps = 47/242 (19%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FDY A+GHYA + + K VKDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDYTATGHYATTLQRNGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG+I+E ETG L HRG+WF+
Sbjct: 173 EIALNADLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGMIIELETGKKLGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VSR Y + + ++ P +
Sbjct: 233 TIGQRKGLGLSGGPW-FVIKKDIQENIIYVSRGYGVKTQYGNELRINDFHFITDNPWQSA 291
Query: 148 SQLHSVFYNCSLTIEHCEDG----GEDIAVVQLSEDDQGLAAGQFAAFYQ--GRRCLGSG 201
+ + + T E + GE + SE+ QG+A GQF Y + C+GSG
Sbjct: 292 GKEIDITFKIRHTPEFTKGKLVQEGERQFRILSSENLQGIAPGQFGVVYDEAAQVCVGSG 351
Query: 202 VI 203
I
Sbjct: 352 EI 353
>gi|224540371|ref|ZP_03680910.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518022|gb|EEF87127.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus
DSM 14838]
Length = 353
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 109/251 (43%), Gaps = 67/251 (26%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV-------- 56
EFD++A+GHYA VH VKDQT FL+ + Q+ +L+F L
Sbjct: 113 EFDFIATGHYATTVHKDGKVWLGIAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R +G I+E ETG + HRG+WF+
Sbjct: 173 DIARNAGLPTARRRDSQGICFLGKINYNDFVRRFLGERQGDIIELETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +V+ KD+E N+++VSR Y Y + K H FH ++
Sbjct: 233 TIGQRKGLGLSGGPW-FVIRKDVEANVLYVSRGYDTQWQYGREFKIHDFH-----FITEN 286
Query: 143 PPEKISQLHSVFYNCSLTIEHCED--------GGEDIAVVQLSEDDQGLAAGQFAAFYQ- 193
P LH+ + + I H + GE +V SE+ QG+A GQF Y
Sbjct: 287 P-----WLHNQEVDVTFKIRHTPEFMKGKLIREGEIYRIVS-SENLQGIAPGQFGVVYDE 340
Query: 194 -GRRCLGSGVI 203
R C+GSG I
Sbjct: 341 ASRICIGSGEI 351
>gi|153807884|ref|ZP_01960552.1| hypothetical protein BACCAC_02170 [Bacteroides caccae ATCC 43185]
gi|149129493|gb|EDM20707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides caccae ATCC 43185]
Length = 354
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FDY A+GHYA + + K VKDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDYTATGHYATTLQRNGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG+I+E ETG L HRG+WF+
Sbjct: 173 EIALNADLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGMIIELETGKKLGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VSR Y + + ++ P +
Sbjct: 233 TIGQRKGLGLSGGPW-FVIKKDIQENIIYVSRGYGVKTQYGNELRINDFHFITDNPWQSA 291
Query: 148 SQLHSVFYNCSLTIEHCEDG----GEDIAVVQLSEDDQGLAAGQFAAFYQ--GRRCLGSG 201
+ + + T E + GE + SE QG+A GQF Y + C+GSG
Sbjct: 292 GKEIDITFKIRHTPEFTKGKLVQEGERQFRILSSEKLQGIAPGQFGVVYDEAAQVCVGSG 351
Query: 202 VI 203
I
Sbjct: 352 EI 353
>gi|423224409|ref|ZP_17210877.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392635967|gb|EIY29854.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 353
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 108/251 (43%), Gaps = 67/251 (26%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV-------- 56
EFD+ A+GHYA VH VKDQT FL+ + Q+ +L+F L
Sbjct: 113 EFDFTATGHYATTVHKDGKVWLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R +G ++E ETG + HRG+WF+
Sbjct: 173 DIARNAGLPTARRRDSQGICFLGKINYNDFVRRFLGERQGDVIEWETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +V+ KD+E N+++VSR Y Y + K H FH ++
Sbjct: 233 TIGQRKGLGLSGGPW-FVIRKDVEANVLYVSRGYDTQWQYGREFKIHDFH-----FITEN 286
Query: 143 PPEKISQLHSVFYNCSLTIEHCED--------GGEDIAVVQLSEDDQGLAAGQFAAFYQ- 193
P LH+ + + I H + GE +V SE+ QG+A GQF Y
Sbjct: 287 P-----WLHNQEVDVTFKIRHTPEFMKGKLIREGEIYRIVS-SENLQGIAPGQFGVVYDE 340
Query: 194 -GRRCLGSGVI 203
R C+GSG I
Sbjct: 341 ASRICIGSGEI 351
>gi|53712700|ref|YP_098692.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46]
gi|81608589|sp|Q64WG8.1|MNMA2_BACFR RecName: Full=tRNA-specific 2-thiouridylase MnmA 2
gi|52215565|dbj|BAD48158.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis YCH46]
Length = 353
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 109/245 (44%), Gaps = 54/245 (22%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FD A+GHYA + K +KDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDLTATGHYATTLQLGGKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEVR 172
Query: 57 -LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ R +P EG ++E ETG + HRG+WF+
Sbjct: 173 EIALRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI++NI++VS Y + + + F ++ P E
Sbjct: 233 TIGQRKGLGLGGGPW-FVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 148 SQLHSVFYNCSLTIE-------HCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+ V + T E H E+G I+ SE QG+A GQF Y + R C
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLLHDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRVCF 347
Query: 199 GSGVI 203
GSG I
Sbjct: 348 GSGEI 352
>gi|298483766|ref|ZP_07001939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. D22]
gi|295087550|emb|CBK69073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides xylanisolvens XB1A]
gi|298270060|gb|EFI11648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. D22]
Length = 355
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 107/244 (43%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
+FD+ A+GHYA + K VKDQT FL+ + Q+ +L+F +
Sbjct: 113 DFDFTATGHYATTLQCDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVR 172
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ R +P EG I+E ETG + HRG+WF+
Sbjct: 173 EIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEKEGAIVELETGKKVGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV+KDIE N ++VSR Y Y + + H FH + G
Sbjct: 233 TIGQRKGLGLSGGPW-FVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E + + + T GE + SE QG+A GQF Y + + C+GS
Sbjct: 292 EKE-VDITFKIRHTPEFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEEVKVCVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEII 354
>gi|336404853|ref|ZP_08585541.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_30]
gi|335940674|gb|EGN02540.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_30]
Length = 355
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 107/244 (43%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
+FD+ A+GHYA + K VKDQT FL+ + Q+ +L+F +
Sbjct: 113 DFDFTATGHYATTLQRDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVR 172
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ R +P EG I+E ETG + HRG+WF+
Sbjct: 173 EIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEKEGAIVELETGKKVGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV+KDIE N ++VSR Y Y + + H FH + G
Sbjct: 233 TIGQRKGLGLSGGPW-FVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E + + + T GE + SE QG+A GQF Y + + C+GS
Sbjct: 292 EKE-VDITFKIRHTPEFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEEVKVCVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEII 354
>gi|393783285|ref|ZP_10371459.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides salyersiae
CL02T12C01]
gi|392669354|gb|EIY62844.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides salyersiae
CL02T12C01]
Length = 354
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 110/243 (45%), Gaps = 48/243 (19%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLVLYP-- 59
+FD+ A+GHYA + K VKDQT FL+ + Q+ +L+F HL+ +
Sbjct: 114 DFDFTATGHYATTLLRDRKIWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGHLMKHEVR 173
Query: 60 --------------------------------RLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG ++E ETG + HRG+WF+
Sbjct: 174 EIAQNAKLPNARRKDSQGICFLGKINYNDFVRRFLGEKEGAVVEWETGKRIGTHRGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++K+IE NI++VS Y + + F ++G P E+
Sbjct: 234 TIGQRKGLGLGGGPW-FVIKKNIEENIIYVSHGYDTEAQYGTEFSLSDFHFITGNPWEEG 292
Query: 148 SQLHSVFYNCSLTIEHCED----GGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGSG 201
S ++ + T E + G V+ SE QG+A GQF Y + C+GSG
Sbjct: 293 SNEVNITFKIRHTPEFIKGRLVRKGNTCHVLS-SEKLQGIAPGQFGVIYDEKAEVCVGSG 351
Query: 202 VIL 204
V++
Sbjct: 352 VVI 354
>gi|319902815|ref|YP_004162543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides helcogenes P 36-108]
gi|319417846|gb|ADV44957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides helcogenes P 36-108]
Length = 354
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 107/247 (43%), Gaps = 52/247 (21%)
Query: 5 SSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV----- 56
+ +FD+ A+GHYA V + VKDQT FL+ + Q+ +L+F L
Sbjct: 110 AGKDFDFTATGHYATTVLQTGKIWLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKH 169
Query: 57 ----LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGF 84
+ R +P EG I+E ETG + KHRG+
Sbjct: 170 EVRDIALRAKLPSARRRDSQGICFLGKINYNDFVRRFLGEREGDIVELETGKKIGKHRGY 229
Query: 85 WFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
WF+TIGQ + LGL + +VV KD++ N+V+VSR Y + + + F ++ P
Sbjct: 230 WFHTIGQRKGLGLSGGPW-FVVRKDVDGNVVYVSRGYNTEQQFGNEFCIRDFHFITDNPW 288
Query: 145 EKISQLHSVFYNCSLTIEHC------EDGGEDIAVVQLSEDDQGLAAGQFAAFYQ--GRR 196
+ V + T E E+GG I E QG+A GQF Y R
Sbjct: 289 GDVENDIKVTFKIRHTPEFIKGRLLREEGGYHIVS---DEKLQGIAPGQFGVVYDVASRL 345
Query: 197 CLGSGVI 203
C+GSG I
Sbjct: 346 CIGSGEI 352
>gi|60680859|ref|YP_211003.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343]
gi|265762789|ref|ZP_06091357.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
gi|336409004|ref|ZP_08589493.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 2_1_56FAA]
gi|383117564|ref|ZP_09938308.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_2_5]
gi|423268691|ref|ZP_17247663.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL05T00C42]
gi|423273750|ref|ZP_17252697.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL05T12C13]
gi|423284748|ref|ZP_17263631.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 615]
gi|81316073|sp|Q5LFN5.1|MNMA2_BACFN RecName: Full=tRNA-specific 2-thiouridylase MnmA 2
gi|60492293|emb|CAH07058.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis NCTC 9343]
gi|251947101|gb|EES87383.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_2_5]
gi|263255397|gb|EEZ26743.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
gi|335934151|gb|EGM96149.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 2_1_56FAA]
gi|392702000|gb|EIY95146.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL05T00C42]
gi|392707183|gb|EIZ00302.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL05T12C13]
gi|404579939|gb|EKA84652.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 615]
Length = 353
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 106/245 (43%), Gaps = 54/245 (22%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FD A+GHYA + K +KDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDLTATGHYATTLQLGGKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG ++E ETG + HRG+WF+
Sbjct: 173 EIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI++NI++VS Y + + + F ++ P E
Sbjct: 233 TIGQRKGLGLGGGPW-FVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 148 SQLHSVFYNCSLTIE-------HCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+ V + T E H E+G I+ SE QG+A GQF Y + R C
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLLHDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRVCF 347
Query: 199 GSGVI 203
GSG I
Sbjct: 348 GSGEI 352
>gi|375357724|ref|YP_005110496.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis 638R]
gi|301162405|emb|CBW21950.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis 638R]
Length = 353
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 106/245 (43%), Gaps = 54/245 (22%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FD A+GHYA + K +KDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDLTATGHYATTLQLGGKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG ++E ETG + HRG+WF+
Sbjct: 173 EIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI++NI++VS Y + + + F ++ P E
Sbjct: 233 TIGQRKGLGLGGGPW-FVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 148 SQLHSVFYNCSLTIE-------HCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+ V + T E H E+G I+ SE QG+A GQF Y + R C
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLLHDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRVCF 347
Query: 199 GSGVI 203
GSG I
Sbjct: 348 GSGEI 352
>gi|423249383|ref|ZP_17230399.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL03T00C08]
gi|423256304|ref|ZP_17237232.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL03T12C07]
gi|392648836|gb|EIY42521.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL03T12C07]
gi|392656930|gb|EIY50568.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL03T00C08]
Length = 353
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 106/245 (43%), Gaps = 54/245 (22%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FD A+GHYA + K +KDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDLTATGHYATTLQLGGKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG ++E ETG + HRG+WF+
Sbjct: 173 EIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI++NI++VS Y + + + F ++ P E
Sbjct: 233 TIGQRKGLGLGGGPW-FVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 148 SQLHSVFYNCSLTIE-------HCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+ V + T E H E+G I+ SE QG+A GQF Y + R C
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLLHDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRVCF 347
Query: 199 GSGVI 203
GSG I
Sbjct: 348 GSGEI 352
>gi|357061226|ref|ZP_09121985.1| tRNA methyl transferase [Alloprevotella rava F0323]
gi|355374735|gb|EHG22027.1| tRNA methyl transferase [Alloprevotella rava F0323]
Length = 356
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 107/250 (42%), Gaps = 58/250 (23%)
Query: 8 EFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIF---HLV--- 56
E+D VA+GHYA + AD VKDQT FL+ L LR+++F HL+
Sbjct: 113 EYDRVATGHYAQT-ETDADGNVWLTTSPDPVKDQTDFLAQLDNLGLRKIMFPIGHLLKEE 171
Query: 57 -------------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFW 85
L + EG+++E ETG+ + KH G+W
Sbjct: 172 VRDIAEREHLAPAHRHDSQGICFLGKIRFSELARKYLGEKEGLVVEKETGNIIGKHPGYW 231
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
F+TIGQ + LG + YVV KDI NI++VS + + F L+ P
Sbjct: 232 FFTIGQRKGLGFGGGPW-YVVGKDIRRNIIYVSHGFQTQAAYGREFFVSQPNFLTLNPFA 290
Query: 146 KISQLHSVFYNCSLTIEHCEDGGEDIAVVQL-------SEDDQGLAAGQFAAFY--QGRR 196
+ Y+ + + H + +V +ED QG+A GQFA Y Q R
Sbjct: 291 ADGE-----YDITFKVRHTPEFTPGRLLVSRGRYKIVSAEDVQGIAPGQFACLYDAQHHR 345
Query: 197 CLGSGVILEA 206
C GSG I +A
Sbjct: 346 CYGSGEIAQA 355
>gi|329954341|ref|ZP_08295433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides clarus YIT 12056]
gi|328527609|gb|EGF54602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides clarus YIT 12056]
Length = 365
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 101/241 (41%), Gaps = 46/241 (19%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV-------- 56
+FD+ A+GHYA V + +KDQT FL+ + Q+ +L+F L
Sbjct: 113 DFDFTATGHYATTVLRNGKTWLGTALDPIKDQTDFLAQIDYLQVSKLMFPLGGLMKREVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG L HRG+WF+
Sbjct: 173 DIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLGEKEGRIVELETGKILGAHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV KD + N+++VSR Y + + H F ++ P E +
Sbjct: 233 TIGQRKGLGLSGGPW-FVVRKDTDENVIYVSRGYDTELQYGHEFGMQDFHFITENPWEGV 291
Query: 148 SQLHSVFYNCSLTIEHCEDG---GEDIAVVQLSEDDQGLAAGQFAAFYQ--GRRCLGSGV 202
+ V + T E E ++ E QG+A GQF Y + C+GSG
Sbjct: 292 KEAIPVTFKIRHTPEFIRGKLLRDETGCLIVSEEKLQGIAPGQFGVVYDEAAKLCIGSGE 351
Query: 203 I 203
I
Sbjct: 352 I 352
>gi|328794279|ref|XP_003252036.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like, partial [Apis
mellifera]
Length = 319
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 98/219 (44%), Gaps = 27/219 (12%)
Query: 6 SMEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLVLYPRL 61
+++ DY+A GHYA + + H +P KDQTYFLS L+Q Q+ R+IF L L
Sbjct: 102 NLDADYIAMGHYAKTITDKNGITHMMRPKDGNKDQTYFLSQLNQNQISRVIFPLA---NL 158
Query: 62 TIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFV 117
T P G ++ + G + H G +YTIGQ LGL +VV K+++ N + V
Sbjct: 159 TKPQSGDMVTPD-GKVVGHHAGLMYYTIGQRSGLGLGSTKESTAPWFVVGKNLQKNQLIV 217
Query: 118 SRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCE---------DGG 168
+ Y S A + +G P H +CS + + D
Sbjct: 218 QQGYDSKLLYATELEASDMSFFTGQPD------HDFKIHCSAKFRYRQPDVGVTVSYDAA 271
Query: 169 EDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207
++ A V E + + GQ YQG CLG G I A+
Sbjct: 272 KNKAKVYFDEPARAVTPGQALVLYQGEECLGGGNIDCAY 310
>gi|403221929|dbj|BAM40061.1| uncharacterized protein TOT_020001047 [Theileria orientalis strain
Shintoku]
Length = 625
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 117/272 (43%), Gaps = 73/272 (26%)
Query: 9 FDYVASGHYANVVHSS---ADHK------DKPSVKDQTYFLSHLSQAQLRRLIFHLVL-- 57
FDYVASGHYA+ V AD + K VKDQTYFLS L+Q QL +LIF L
Sbjct: 354 FDYVASGHYASAVQDKSLCADRRIRRLVLSKDPVKDQTYFLSRLNQFQLSKLIFPLEYLT 413
Query: 58 ------YPRLT-IP------------ME----------------GIILEAETGDFLEKHR 82
Y R+ +P ME G I++ +T + +H
Sbjct: 414 KQQVREYARIIGLPSHNKEDSVGLCFMEDMNISEYLLSKLGKNTGPIVDYKTKQIIGEHP 473
Query: 83 GFWFYTIGQHQEL-GLLYI-----VYRYVVEKDIENNIVFVSRNY------------YSF 124
G + Y+IGQ + L +Y RYV++KD+ NN+++V+ +Y SF
Sbjct: 474 GVFNYSIGQRKNLNNYIYTKCNPNTLRYVIKKDLNNNVLYVTEDYDSEEYTQPGGVRRSF 533
Query: 125 DKKRHLFHAGSL-KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIA--------VVQ 175
F+ ++L+ E H Y + + H + I +V
Sbjct: 534 KITDIFFNTTDYAEVLNRCKIEDGIDAHGDAYRLRVKLRHSPKFYDSITHLYNNSSNIVC 593
Query: 176 LSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207
LSE D G++ GQ+ FY CLGS ++ ++
Sbjct: 594 LSEADSGISTGQYCVFYLDDLCLGSAKMITSY 625
>gi|383115026|ref|ZP_09935785.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D2]
gi|423295693|ref|ZP_17273820.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus
CL03T12C18]
gi|313693264|gb|EFS30099.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D2]
gi|392671421|gb|EIY64893.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides ovatus
CL03T12C18]
Length = 355
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 104/244 (42%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV-------- 56
+FD+ A+GHYA + + K VKDQT FL+ + Q+ +L+F +
Sbjct: 113 DFDFTATGHYATTLQRNGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ET L HRG+WF+
Sbjct: 173 EIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAIIELETEKKLGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV+KD+E N ++VSR Y Y + + H FH + G
Sbjct: 233 TIGQRKGLGLSGGPW-FVVKKDMEENTIYVSRGYGVETQYGNEFRMHDFHFITDNPWKGQ 291
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E I + + T GE + SE QG+A GQF Y + + C+GS
Sbjct: 292 EKE-IDITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEEAKVCVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEII 354
>gi|423241595|ref|ZP_17222707.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL03T12C01]
gi|392641048|gb|EIY34836.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL03T12C01]
Length = 354
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 103/245 (42%), Gaps = 57/245 (23%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
+D A+GHYA+++ + VKDQT FL+ + Q+ +L+F L
Sbjct: 114 YDKTATGHYASILEKDGKIWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKNEVRD 173
Query: 57 ----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG I+E ETG + H+G+WF+T
Sbjct: 174 IARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGEKEGAIIEMETGKRIGTHKGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGLP 143
IGQ + LGL + +V+ KDI+ NI++VSR Y Y D H FH + L G
Sbjct: 234 IGQRKGLGLSGGPW-FVIRKDIDENIIYVSRGYDTEKQYGTDFALHDFHFITEDLWEGDS 292
Query: 144 PEKIS---QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
P +S + F +LT G + + E QG+A GQF Y C+
Sbjct: 293 PVDVSFKIRHTDTFMKGTLT------RGNGLFQIHSHEPLQGIAPGQFGVLYDKDAEICV 346
Query: 199 GSGVI 203
GSG I
Sbjct: 347 GSGEI 351
>gi|212690555|ref|ZP_03298683.1| hypothetical protein BACDOR_00040 [Bacteroides dorei DSM 17855]
gi|212666904|gb|EEB27476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides dorei DSM 17855]
Length = 354
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 103/245 (42%), Gaps = 57/245 (23%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
+D A+GHYA+++ + VKDQT FL+ + Q+ +L+F L
Sbjct: 114 YDKTATGHYASILEKDGKLWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKNEVRD 173
Query: 57 ----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG I+E ETG + H+G+WF+T
Sbjct: 174 IARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGEKEGAIIEMETGKRIGTHKGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGLP 143
IGQ + LGL + +V+ KDI+ NI++VSR Y Y D H FH + L G
Sbjct: 234 IGQRKGLGLSGGPW-FVIRKDIDENIIYVSRGYDTEKQYGTDFALHDFHFITEDLWEGDS 292
Query: 144 PEKIS---QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
P +S + F +LT G + + E QG+A GQF Y C+
Sbjct: 293 PVDVSFKIRHTDTFMKGTLT------RGNGLFQIHSHEPLQGIAPGQFGVLYDKDAEICV 346
Query: 199 GSGVI 203
GSG I
Sbjct: 347 GSGEI 351
>gi|423299230|ref|ZP_17277255.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides finegoldii
CL09T03C10]
gi|408473039|gb|EKJ91561.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides finegoldii
CL09T03C10]
Length = 355
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 106/244 (43%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
EFD+ A+GHYA + K VKDQT FL+ + Q+ +L+F H V
Sbjct: 113 EFDFTATGHYATTIQRDGKVWLGTAKDPVKDQTDFLAQIDYLQISKLMFPIGGLTKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG+I+E ETG L H G+WF+
Sbjct: 173 EIADAAGLPSAKRKDSQGICFLGKINYNDFVRRFLGEREGVIVELETGKKLGTHHGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV+KDI+ NI++VS Y Y + + FH + + G
Sbjct: 233 TIGQRKGLGLSGGPW-FVVKKDIQENIIYVSCGYGVETQYGNEFQMRDFHFITDNIWKGQ 291
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E + + + T G++ + SE QG+A GQF Y + R C+GS
Sbjct: 292 DKE-VDITFKIRHTPEFTKGKLIMKGDNQFHILSSEKLQGIAPGQFGVIYDKEARICVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEII 354
>gi|265754225|ref|ZP_06089414.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
gi|345515896|ref|ZP_08795393.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei 5_1_36/D4]
gi|229436527|gb|EEO46604.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei 5_1_36/D4]
gi|263234934|gb|EEZ20489.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
Length = 354
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
+D A+GHYA+++ + VKDQT FL+ + Q+ +L+F L
Sbjct: 114 YDKTATGHYASILEKDGKIWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKNEVRD 173
Query: 57 ----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG I+E ETG + H+G+WF+T
Sbjct: 174 IARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGEKEGAIIEMETGKRIGTHKGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGLP 143
IGQ + LGL + +V+ KDI NI++VSR Y Y D H FH + L G
Sbjct: 234 IGQRKGLGLSGGPW-FVIRKDINENIIYVSRGYDTEKQYGTDFALHDFHFITEDLWEGDS 292
Query: 144 PEKIS---QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
P IS + F +LT G + + E QG+A GQF Y C+
Sbjct: 293 PVDISFKIRHTDTFMKGTLT------RGNGLFQIHSHEPLQGIAPGQFGVLYDKDAEICV 346
Query: 199 GSGVI 203
GSG I
Sbjct: 347 GSGEI 351
>gi|189462149|ref|ZP_03010934.1| hypothetical protein BACCOP_02831 [Bacteroides coprocola DSM 17136]
gi|189431122|gb|EDV00107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides coprocola DSM 17136]
Length = 378
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 111/245 (45%), Gaps = 57/245 (23%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-- 63
+D +A+GHYA+ + K ++KDQT FL+ ++ Q+ +L+F L Y + I
Sbjct: 139 YDKIATGHYASTCELNGKTWLATAKDAIKDQTDFLAQINYLQVSKLLFPLGGYMKKEIRH 198
Query: 64 -----------------------------------PMEGIILEAETGDFLEKHRGFWFYT 88
+G I+E E+G + KHRGFWF+T
Sbjct: 199 IAAQAKLPSAQRKDSQGICFLGKINYNDFIRRFLGERQGSIIELESGKEIGKHRGFWFHT 258
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP--PEK 146
IGQ + LGL + +VV+KD ENNI++VS Y + + + F ++ P EK
Sbjct: 259 IGQRKGLGLSGGPW-FVVDKDTENNILYVSHGYDTEQQYSNEFKLTDFHFITDNPWLTEK 317
Query: 147 ISQL------HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
Q+ F+ +L +++ I ++ SE QG+A GQF Y C+
Sbjct: 318 EQQVCFKVRHTDGFHQGNLILKN------GICHIRSSEKIQGIAPGQFGVIYDKDAHLCI 371
Query: 199 GSGVI 203
GSG I
Sbjct: 372 GSGEI 376
>gi|429740634|ref|ZP_19274315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas catoniae F0037]
gi|429160546|gb|EKY03006.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas catoniae F0037]
Length = 393
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 114/263 (43%), Gaps = 66/263 (25%)
Query: 8 EFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF---------- 53
+FD++A+GHYA DH +KDQT FL+ ++ AQ+R+L+F
Sbjct: 134 DFDFIATGHYATTTFV-GDHLFLSTAPDPIKDQTDFLAQINFAQVRKLLFPTGHLLKSEV 192
Query: 54 -------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWF 86
HL+ R EG+I+E ETG L +H+G+WF
Sbjct: 193 REVAEGAHLISAKRRDSQGICFLGKVNYNEFIERALGQKEGLIIERETGKVLGRHKGYWF 252
Query: 87 YTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDK-KRHL--------------F 131
+TIGQ + LGL + +VV+K+I NI+ VS+ Y D+ RH+ +
Sbjct: 253 HTIGQRKGLGLSGGPW-FVVKKNIRRNIILVSQGYDPRDQYGRHIAMDWCDFISLDPWSY 311
Query: 132 HAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCE-----DGGEDIAVVQLSEDDQGLAAG 186
A + + L E Q + + T E D E + ED QG+A G
Sbjct: 312 DALVREGVDRLVGEAERQPLPITFKIRHTPEFARGTLYYDPKEGYR-IDSEEDIQGIAPG 370
Query: 187 QFAAFYQGRR--CLGSGVILEAW 207
Q+A Y C GSG+I + W
Sbjct: 371 QYAVLYDENHHICFGSGMITKGW 393
>gi|212550689|ref|YP_002309006.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548927|dbj|BAG83595.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
Length = 355
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 109/247 (44%), Gaps = 54/247 (21%)
Query: 8 EFDYVASGHYANVVH-------SSADHKDKPSVKDQTYFLSHLSQAQLRRLIF---HL-- 55
EFD +A+GHYA S+A K VKDQTYFL + Q+ +L+F HL
Sbjct: 114 EFDKIATGHYATTTEINDEIYLSTAFDK----VKDQTYFLGQIDYLQISKLMFPIGHLQK 169
Query: 56 ----VLYPRLTIPME----------------------------GIILEAETGDFLEKHRG 83
++ + +P G I+E ETG L H+G
Sbjct: 170 SEVRIIAAKQDLPSAFRKDSQGICFLGKINYSNFIRRYLGEKLGKIVELETGKILGNHKG 229
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP 143
+WFYTIGQ + L L + +V++KD++ NIVFVS +Y S + + + ++
Sbjct: 230 YWFYTIGQRKGLYLSGGPW-FVIKKDVQQNIVFVSNDYKSKIRYSKSLNLERVHFITRNI 288
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD---QGLAAGQFAAFYQGR--RCL 198
+ + + T + I V E + QG+AAGQF Y R CL
Sbjct: 289 FDDFIDTKEIAFKIRHTPKFTFGKIRHIGNVYRIESESKIQGIAAGQFGVIYDKRCKLCL 348
Query: 199 GSGVILE 205
GSGVI+E
Sbjct: 349 GSGVIIE 355
>gi|423229942|ref|ZP_17216347.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL02T00C15]
gi|423247032|ref|ZP_17228083.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL02T12C06]
gi|392632152|gb|EIY26115.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL02T00C15]
gi|392633645|gb|EIY27586.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei CL02T12C06]
Length = 354
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
+D A+GHYA+++ + VKDQT FL+ + Q+ +L+F L
Sbjct: 114 YDKTATGHYASILEKDGKIWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKNEVRD 173
Query: 57 ----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG I+E ETG + H+G+WF+T
Sbjct: 174 IARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGEKEGAIIEMETGKRIGTHKGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGLP 143
IGQ + LGL + +V+ KDI NIV+VSR Y Y D H FH + L G
Sbjct: 234 IGQRKGLGLSGGPW-FVIRKDINENIVYVSRGYDTEKQYGTDFALHDFHFITEDLWEGDS 292
Query: 144 PEKIS---QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR--CL 198
P +S + F +LT G + + E QG+A GQF Y C+
Sbjct: 293 PVDVSFKIRHTDTFMKGTLT------RGNGLFQIHSHEPLQGIAPGQFGVLYDKDTEICV 346
Query: 199 GSGVI 203
GSG I
Sbjct: 347 GSGEI 351
>gi|383123850|ref|ZP_09944521.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_6]
gi|382983863|gb|EES67003.2| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_6]
Length = 356
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 105/243 (43%), Gaps = 51/243 (20%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
FD+ A+GHYA + K VKDQT FL+ + Q+ +L+F +
Sbjct: 115 FDFTATGHYATTIRQDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVRE 174
Query: 57 LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFYT 88
+ R +P EG I+E ETG + HRG+WF+T
Sbjct: 175 IASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEREGAIIELETGKKVGTHRGYWFHT 234
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + LGL + +V++KDIE NI++VS Y + F ++ P +
Sbjct: 235 IGQRKGLGLSGGPW-FVIKKDIEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDAG 293
Query: 149 QLHSVFYNCSLTIEHC------EDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
+ + + T E E+GG+ + SE QG+A GQF Y + C+GS
Sbjct: 294 KEIDITFKIRHTPEFTKGKLVQEEGGQ--FRILSSEKLQGIAPGQFGVIYDEEAGICVGS 351
Query: 201 GVI 203
G I
Sbjct: 352 GEI 354
>gi|237707989|ref|ZP_04538470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 9_1_42FAA]
gi|229457975|gb|EEO63696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 9_1_42FAA]
Length = 354
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
+D A+GHYA+++ + VKDQT FL+ + Q+ +L+F L
Sbjct: 114 YDKTATGHYASILEKDGKIWLGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKNEVRD 173
Query: 57 ----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG I+E ETG + H+G+WF+T
Sbjct: 174 IARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLGEKEGAIIEMETGKRIGTHKGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGLP 143
IGQ + LGL + +V+ KDI NI++VSR Y Y D H FH + L G
Sbjct: 234 IGQRKGLGLSGGPW-FVIRKDINENIIYVSRGYDTEKQYGTDFALHDFHFITEDLWEGDS 292
Query: 144 PEKIS---QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
P +S + F +LT G + + E QG+A GQF Y C+
Sbjct: 293 PVDVSFKIRHTDTFMKGTLT------RGNGLFQIHSHEPLQGIAPGQFGVLYDKDAEICV 346
Query: 199 GSGVI 203
GSG I
Sbjct: 347 GSGEI 351
>gi|423258356|ref|ZP_17239279.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL07T00C01]
gi|423264672|ref|ZP_17243675.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL07T12C05]
gi|387777258|gb|EIK39356.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL07T00C01]
gi|392705362|gb|EIY98493.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis
CL07T12C05]
Length = 353
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 105/245 (42%), Gaps = 54/245 (22%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FD A+GHYA + K +KDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDLTATGHYATTLQLGGKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG ++E ETG + HRG+WF+
Sbjct: 173 EIALQAGLPSACRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI +NI++VS Y + + + F ++ P E
Sbjct: 233 TIGQRKGLGLGGGPW-FVVKKDILDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 148 SQLHSVFYNCSLTIE-------HCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+ V + T E H E+G I+ SE QG+A GQF Y + R C
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLLHDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRVCF 347
Query: 199 GSGVI 203
GSG I
Sbjct: 348 GSGEI 352
>gi|380694670|ref|ZP_09859529.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides faecis MAJ27]
Length = 355
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 49/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV-------- 56
+FD+ A+GHYA V K VKDQT FL+ + Q+ +L+F +
Sbjct: 113 DFDFTATGHYATTVQRDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPVGGLMKQEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG + HRG+WF+
Sbjct: 173 EIARNTGLPSARRKDSQGICFLGKINYNDFVRRFLGEQEGAIIELETGKRVGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KD++ NI++VS Y + H F ++ P +
Sbjct: 233 TIGQRKGLGLSGGPW-FVIKKDVQENIIYVSHGYGVETQFGHEFRINDFHFITDNPWKDA 291
Query: 148 SQLHSVFYNCSLTIEHC-----EDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
+ + + T E ++ G ++ SE QG+A GQF Y + C+GS
Sbjct: 292 GKEVDITFKIRHTPEFTRGRLIQEEGNRFRILS-SEKLQGIAPGQFGVVYDQEAGVCVGS 350
Query: 201 GVIL 204
G I+
Sbjct: 351 GEIV 354
>gi|169334729|ref|ZP_02861922.1| hypothetical protein ANASTE_01135 [Anaerofustis stercorihominis DSM
17244]
gi|169257467|gb|EDS71433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerofustis stercorihominis DSM 17244]
Length = 354
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 109/252 (43%), Gaps = 58/252 (23%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL---- 55
AI+ + DY+A+GHYA V H+ K K KDQTYFLS L + QL R+IF L
Sbjct: 104 AINVLNADYIATGHYAKVEHTKEGTRLLKAKDQHKDQTYFLSLLKEKQLERVIFPLADVE 163
Query: 56 --------------------------------VLYPRLTIPME-GIILEAETGDFLEKHR 82
+ + +P + G +++ +TG+ +H
Sbjct: 164 KGEVREIAEREGFRNAKKKDSTGICFIGERNFTQFLQNYLPNQPGDMIDMDTGEKKGEHI 223
Query: 83 GFWFYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
G +YT+GQ + LG+ YV +KD+ NNI+++ + + ++ F A + ++
Sbjct: 224 GLMYYTLGQRRGLGVGGCGSGERWYVADKDLNNNILYIVQGDKNPKLYKNGFIATDVNMI 283
Query: 140 SGLPPEKISQLHSVFYNCSLTIEH--------CEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
SG P S + C + H E E A V E+ G+ GQ A F
Sbjct: 284 SGHYP-------SDKFECEMRFRHLQPLKKATVEVIDESTARVIFDEEQSGVTPGQIAVF 336
Query: 192 YQGRRCLGSGVI 203
Y G CLG G I
Sbjct: 337 YDGEVCLGGGTI 348
>gi|423724199|ref|ZP_17698344.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides merdae
CL09T00C40]
gi|409240067|gb|EKN32849.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides merdae
CL09T00C40]
Length = 358
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 46/243 (18%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA K VKDQT FL +++ Q+++L+F HL+
Sbjct: 114 DFDKIATGHYATTTEIDGKVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R G I+E ETG L KH G+WF+
Sbjct: 174 AIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRTGKIVELETGKVLGKHNGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VS Y + + + ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIKKDIKRNIIYVSNGYDPETQYGKIINMHGFDFITEDPWGQF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD---QGLAAGQFAAFYQG--RRCLGSGV 202
+ + + T + I + E D QG+A GQ+ Y R CLGSG+
Sbjct: 293 ADEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVYDKDHRLCLGSGM 352
Query: 203 ILE 205
I++
Sbjct: 353 IID 355
>gi|154491735|ref|ZP_02031361.1| hypothetical protein PARMER_01351 [Parabacteroides merdae ATCC
43184]
gi|154087976|gb|EDN87021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Parabacteroides merdae ATCC 43184]
Length = 358
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 46/243 (18%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA K VKDQT FL +++ Q+++L+F HL+
Sbjct: 114 DFDKIATGHYATTTEIDGKVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R G I+E ETG L KH G+WF+
Sbjct: 174 AIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRTGKIVELETGKVLGKHNGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VS Y + + + ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIKKDIKRNIIYVSNGYDPETQYGKIINMHGFDFITEDPWGEF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD---QGLAAGQFAAFYQG--RRCLGSGV 202
+ + + T + I + E D QG+A GQ+ Y R CLGSG+
Sbjct: 293 ADEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVYDKDHRLCLGSGM 352
Query: 203 ILE 205
I++
Sbjct: 353 IID 355
>gi|393787356|ref|ZP_10375488.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides nordii
CL02T12C05]
gi|392658591|gb|EIY52221.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides nordii
CL02T12C05]
Length = 355
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 108/246 (43%), Gaps = 53/246 (21%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD+ A+GHYA + K VKDQT FL+ + Q+ +L+F HL+
Sbjct: 114 DFDFTATGHYATTLQRDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGHLMKNEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG ++E ETG + HRG+WF+
Sbjct: 174 EIALKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIELETGKKIGTHRGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI++NIV+VS Y + + F G ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIKKDIQDNIVYVSHGYGVETQFGNEFSLGDFHYITDNPWWE- 291
Query: 148 SQLHSVFYNCSLTIEHCED-------GGEDIAVVQLSEDDQGLAAGQFAAFYQ--GRRCL 198
S+ V + + I H + ED + SE QG+A GQF Y C+
Sbjct: 292 SEAEGV--DITFKIRHTPEFIKGKLFREEDRYRILSSEKLQGIAPGQFGVVYDELAEVCI 349
Query: 199 GSGVIL 204
GSG I+
Sbjct: 350 GSGEII 355
>gi|29345565|ref|NP_809068.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron
VPI-5482]
gi|81587200|sp|Q8ABF5.1|MNMA1_BACTN RecName: Full=tRNA-specific 2-thiouridylase MnmA 1
gi|29337457|gb|AAO75262.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides thetaiotaomicron VPI-5482]
Length = 355
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 51/243 (20%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
FD+ A+GHYA + K VKDQT FL+ + Q+ +L+F +
Sbjct: 114 FDFTATGHYATTIRQDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVRE 173
Query: 57 LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFYT 88
+ R +P EG I+E ETG + HRG+WF+T
Sbjct: 174 IASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEREGAIIELETGKKVGTHRGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + LGL + +V++KD+E NI++VS Y + F ++ P +
Sbjct: 234 IGQRKGLGLSGGPW-FVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDAG 292
Query: 149 QLHSVFYNCSLTIEHC------EDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
+ + + T E E+GG+ + SE QG+A GQF Y + C+GS
Sbjct: 293 KEIDITFKIRHTPEFTKGKLVQEEGGQ--FRILSSEKLQGIAPGQFGVIYDEEAGICVGS 350
Query: 201 GVI 203
G I
Sbjct: 351 GEI 353
>gi|160888906|ref|ZP_02069909.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492]
gi|317479366|ref|ZP_07938500.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
gi|156861805|gb|EDO55236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides uniformis ATCC 8492]
gi|316904440|gb|EFV26260.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
Length = 354
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 105/243 (43%), Gaps = 50/243 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV-------- 56
+FD A+GHYA V SVKDQT FL+ + Q+ +L+F L
Sbjct: 113 DFDVTATGHYATTVLRDGKTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKNEVR 172
Query: 57 -LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ R +P EG I+E ETG L KHRG+WF+
Sbjct: 173 DIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLGEREGDIVELETGRKLGKHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRN-----YYSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV KD+E N+++VSR Y ++ + + FH + G
Sbjct: 233 TIGQRKGLGLGGGPW-FVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDNPWKG- 290
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E++ + + + E +V E QG+A GQF Y R C+GS
Sbjct: 291 AQEEVEVTFKIRHTPEFVKGRLQKEAEGYRIVS-EEKLQGIAPGQFGVVYDADARLCVGS 349
Query: 201 GVI 203
G I
Sbjct: 350 GEI 352
>gi|270293669|ref|ZP_06199871.1| tRNA methyl transferase [Bacteroides sp. D20]
gi|270275136|gb|EFA20996.1| tRNA methyl transferase [Bacteroides sp. D20]
Length = 366
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 109/248 (43%), Gaps = 60/248 (24%)
Query: 8 EFDYVASGHYANVV--------HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLV--- 56
+FD A+GHYA V ++AD SVKDQT FL+ + Q+ +L+F L
Sbjct: 125 DFDVTATGHYATTVLRDGKTWLGTAAD-----SVKDQTDFLAQIDYLQVSKLMFPLGRLM 179
Query: 57 ------LYPRLTIP----------------------------MEGIILEAETGDFLEKHR 82
+ R +P EG I+E ETG L KHR
Sbjct: 180 KNEVRDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLGEREGDIVELETGRKLGKHR 239
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRN-----YYSFDKKRHLFHAGSLK 137
G+WF+TIGQ + LGL + +VV KD+E N+++VSR Y ++ + + FH +
Sbjct: 240 GYWFHTIGQRKGLGLGGGPW-FVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDN 298
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGR 195
G E++ + + + E +V E QG+A GQF Y R
Sbjct: 299 PWKG-AQEEVEVTFKIRHTPEFVKGRLQKEAEGYRIVS-EEKLQGIAPGQFGVVYDADAR 356
Query: 196 RCLGSGVI 203
C+GSG I
Sbjct: 357 LCVGSGEI 364
>gi|317473871|ref|ZP_07933151.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
gi|316909948|gb|EFV31622.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
Length = 365
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 104/248 (41%), Gaps = 54/248 (21%)
Query: 5 SSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV----- 56
+ +FD+ A+GHYA + + VKDQT FL+ + Q+ +L+F L
Sbjct: 110 AGKDFDFTATGHYAATILQNGKVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169
Query: 57 --------------------------------LYPRLTIPMEGIILEAETGDFLEKHRGF 84
R EG I+E ETG L HRG+
Sbjct: 170 EVRDIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLGEKEGRIIELETGKILGTHRGY 229
Query: 85 WFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
WF+TIGQ + LGL + +VV KD + N+++VSR Y + + + F ++ P
Sbjct: 230 WFHTIGQRKGLGLGGGPW-FVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITENPW 288
Query: 145 EKISQLHSVFYNCSLTIEHCED--GGE-----DIAVVQLSEDDQGLAAGQFAAFYQ--GR 195
E + V + I H D GG+ D + E QG+A GQF Y R
Sbjct: 289 EGVEGEIPV----TFKIRHTPDFIGGKLLQDGDGYRIVSEEKLQGIAPGQFGVVYDEASR 344
Query: 196 RCLGSGVI 203
C+GSG I
Sbjct: 345 LCIGSGEI 352
>gi|218130411|ref|ZP_03459215.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697]
gi|217987412|gb|EEC53742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides eggerthii DSM 20697]
Length = 365
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 104/248 (41%), Gaps = 54/248 (21%)
Query: 5 SSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV----- 56
+ +FD+ A+GHYA + + VKDQT FL+ + Q+ +L+F L
Sbjct: 110 AGKDFDFTATGHYAATILQNGKVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169
Query: 57 --------------------------------LYPRLTIPMEGIILEAETGDFLEKHRGF 84
R EG I+E ETG L HRG+
Sbjct: 170 EVRDIALKAKLPSARRRDSQGICFLGRINYNDFVRRFLGEKEGRIIELETGKILGTHRGY 229
Query: 85 WFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
WF+TIGQ + LGL + +VV KD + N+++VSR Y + + + F ++ P
Sbjct: 230 WFHTIGQRKGLGLGGGPW-FVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITENPW 288
Query: 145 EKISQLHSVFYNCSLTIEHCED--GGE-----DIAVVQLSEDDQGLAAGQFAAFYQ--GR 195
E + V + I H D GG+ D + E QG+A GQF Y R
Sbjct: 289 EGVEGEIPV----TFKIRHTPDFIGGKLLQDGDGYRIVSEEKLQGIAPGQFGVVYDEASR 344
Query: 196 RCLGSGVI 203
C+GSG I
Sbjct: 345 LCIGSGEI 352
>gi|423305874|ref|ZP_17283873.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides uniformis
CL03T00C23]
gi|423309584|ref|ZP_17287574.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides uniformis
CL03T12C37]
gi|392680474|gb|EIY73844.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides uniformis
CL03T00C23]
gi|392684178|gb|EIY77507.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides uniformis
CL03T12C37]
Length = 354
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 105/243 (43%), Gaps = 50/243 (20%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV-------- 56
+FD A+GHYA V SVKDQT FL+ + Q+ +L+F L
Sbjct: 113 DFDITATGHYATTVLRDGKTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKNEVR 172
Query: 57 -LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ R +P EG I+E ETG L KHRG+WF+
Sbjct: 173 DIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLGEREGDIVELETGRKLGKHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRN-----YYSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +VV KD+E N+++VSR Y ++ + + FH + G
Sbjct: 233 TIGQRKGLGLGGGPW-FVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDNPWKG- 290
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
E++ + + + E +V E QG+A GQF Y R C+GS
Sbjct: 291 AQEEVEVTFKIRHTPEFVKGRLQKEAEGYRIVS-EEKLQGIAPGQFGVVYDADARLCVGS 349
Query: 201 GVI 203
G I
Sbjct: 350 GEI 352
>gi|375255310|ref|YP_005014477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Tannerella forsythia ATCC 43037]
gi|363408520|gb|AEW22206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Tannerella forsythia ATCC 43037]
Length = 445
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 50/244 (20%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA + K VKDQT FL ++ Q+ +L+F HL+
Sbjct: 205 DFDKIATGHYATTTEINGRTWLSTAKDPVKDQTDFLGQITNLQISKLMFPIGHLMKSEVR 264
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG + KH+G+WF+
Sbjct: 265 AIASAQNLPSAQRRDSQGICFLGKIDYNDFIERYLGRREGKIIELETGKVIGKHQGYWFH 324
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ + LGL + +V+ KD+++NI++VS Y Y + FH + +
Sbjct: 325 TIGQRKGLGLSGGPW-FVIRKDVDDNIIYVSNGYDPETQYGKTIRMEGFHFITEDIWGTF 383
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR--CLGS 200
EK + + T + G D+ ++ + QG+A GQFA Y C+GS
Sbjct: 384 DDEK-EITFKIRHTPEFTHGYIRRFG-DLYTIRSDDKIQGIAPGQFAVVYDKEHHLCIGS 441
Query: 201 GVIL 204
G+I+
Sbjct: 442 GMII 445
>gi|332299754|ref|YP_004441675.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas asaccharolytica DSM 20707]
gi|332176817|gb|AEE12507.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas asaccharolytica DSM 20707]
Length = 379
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 105/253 (41%), Gaps = 58/253 (22%)
Query: 5 SSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF------- 53
S +DY+A+GHYA + ++ VKDQT FL+ + Q+ RL+F
Sbjct: 127 SGSSYDYIATGHYATIRKTAEGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFPIGHLPK 186
Query: 54 ----------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRG 83
HLV R G I++ ETG+ + +HRG
Sbjct: 187 EEVRRIALEAHLVNAQRKDSQGICFLGQINYNDFIERYLGTQTGDIIDHETGEKIGEHRG 246
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP 143
+WF+TIGQ + LGL + YVV KD+E+N+++ SR Y + + + L+ P
Sbjct: 247 YWFHTIGQRKGLGLSGGPW-YVVAKDVEHNVLYASRGYDPKTQYGTIIETEEMHWLTVDP 305
Query: 144 PEKISQLHSVFYNCSLTIEHCED-----------GGEDIAVVQLSEDDQGLAAGQFAAFY 192
+ I H D GG + SE QG+AAGQFA Y
Sbjct: 306 WLWTETPSDSPLEVTFKIRHTPDFTAGRLERLPSGGYQLVS---SEPIQGIAAGQFATIY 362
Query: 193 --QGRRCLGSGVI 203
Q + C GS I
Sbjct: 363 DPQHQLCWGSAPI 375
>gi|423348475|ref|ZP_17326158.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides merdae
CL03T12C32]
gi|409213953|gb|EKN06965.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides merdae
CL03T12C32]
Length = 358
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 104/243 (42%), Gaps = 46/243 (18%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA K VKDQT FL +++ Q+++L+F HL+
Sbjct: 114 DFDKIATGHYATTTEIDGKVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R G I+E ETG L KH G+WF+
Sbjct: 174 AIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRTGKIVELETGKVLGKHNGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VS Y + + + ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIKKDIKRNIIYVSNGYDPETQYGKIINMHGFDFITEDPWGEF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD---QGLAAGQFAAFYQG--RRCLGSGV 202
+ + T + I + E D QG+A GQ+ Y R CLGSG+
Sbjct: 293 EDEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVYDKDHRLCLGSGM 352
Query: 203 ILE 205
I++
Sbjct: 353 IID 355
>gi|304383810|ref|ZP_07366268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella marshii DSM 16973]
gi|304335066|gb|EFM01338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella marshii DSM 16973]
Length = 382
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 99/250 (39%), Gaps = 48/250 (19%)
Query: 1 MDAISSMEFDYVASGHYANVV----HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
D E++ +A+GHYA H P VKDQT FL+ L QLR+ +F +
Sbjct: 132 FDEKKGHEYELIATGHYAQTEIIDGHKWLVTSPDP-VKDQTDFLAQLYDWQLRKALFPIG 190
Query: 57 LYPRLTIPM-------------------------------------EGIILEAETGDFLE 79
Y + + EG ++E ETG +
Sbjct: 191 HYRKEEVRQIAEREHLINAKRKDSQGICFLGKINYNDYIRRYLGENEGEVVELETGKCIG 250
Query: 80 KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
KH+G WF+TIGQ LG + Y V KD++ NI++VS+ + R F L
Sbjct: 251 KHKGLWFHTIGQRHGLGFGGGPW-YAVRKDVKRNILYVSKGFEPATAYRRDFEIADFHFL 309
Query: 140 SGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRC 197
+ LP E + + E G V + QG+A GQF Y Q RC
Sbjct: 310 T-LPVEMEDVCFKIRHTPEYHKAKLEKRGNGAYTVHAEKPVQGVAPGQFCVVYDEQHHRC 368
Query: 198 LGSGVILEAW 207
GSG I AW
Sbjct: 369 FGSGEI--AW 376
>gi|333029643|ref|ZP_08457704.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides coprosuis DSM
18011]
gi|332740240|gb|EGJ70722.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides coprosuis DSM
18011]
Length = 356
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 51/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADHK----DKPSVKDQTYFLSHLSQAQLRRLIFHLV------- 56
++D+ A+GHYA+ H D K +KDQT FL+ + + Q+ +L+F L
Sbjct: 114 QYDFTATGHYAST-HCIDDQTWLGTAKDPLKDQTDFLAQIDKLQVSKLMFPLGNLMKHEV 172
Query: 57 ------------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWF 86
R EG I+E ETG L KH+GFWF
Sbjct: 173 RDIALNAKLPSAKRKDSQGICFLGKINYNDFVKRFLGEKEGPIIELETGKILGKHKGFWF 232
Query: 87 YTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSG 141
+TIGQ + +GL + YVV+KDI+ N ++VSR + Y + FH +
Sbjct: 233 HTIGQRKGIGLAGGPW-YVVKKDIQENTIYVSRGFDVETQYGDHFTMNDFHFITANPWKE 291
Query: 142 LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLG 199
P E + + + + + G +++ E+ QG+A GQF Y + C+G
Sbjct: 292 FPKEGVEIKFKIRHTPEYSPGYLFQKGTQY-LLRSKENLQGIAPGQFGVIYDKDAKICIG 350
Query: 200 SGVI 203
SG I
Sbjct: 351 SGEI 354
>gi|260591395|ref|ZP_05856853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella veroralis F0319]
gi|260536761|gb|EEX19378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella veroralis F0319]
Length = 360
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 110/255 (43%), Gaps = 62/255 (24%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
DA ++D +A+GHYA + +S D VKDQT FL+ + QL++ I
Sbjct: 114 FDAKMGHDYDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQIYDWQLKKAI 168
Query: 53 FHLVLYPRLTI-------------------------------------PMEGIILEAETG 75
F + Y + + G I+E ETG
Sbjct: 169 FPIGHYAKNEVREIAEQEHLINARRKDSQGICFLGNIDYNEYVRRYLGEQVGDIIELETG 228
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHL 130
+ +HRG WF+TIGQ + LGL + +VV+KD+ NI++VS Y Y D H
Sbjct: 229 KKIGEHRGLWFHTIGQRKGLGLGGGPW-FVVKKDVAQNILYVSHGYDPATTYKKDFPLHD 287
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
FH + + + LP + ++ + T+E DG ++ +E G+A GQF
Sbjct: 288 FHFLT-EGIKELPTKVTFKIRHTPEYHTATVEQLSDGK---CLIHSTESIHGVAPGQFCV 343
Query: 191 FY--QGRRCLGSGVI 203
Y Q RC GSG I
Sbjct: 344 IYDEQHHRCFGSGEI 358
>gi|218264372|ref|ZP_03478229.1| hypothetical protein PRABACTJOHN_03925 [Parabacteroides johnsonii
DSM 18315]
gi|218222070|gb|EEC94720.1| hypothetical protein PRABACTJOHN_03925 [Parabacteroides johnsonii
DSM 18315]
Length = 358
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 104/243 (42%), Gaps = 46/243 (18%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA K VKDQT FL +++ Q+++L+F HL+
Sbjct: 114 DFDKIATGHYATTTEIDGKVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R G I+E ETG L KH G+WF+
Sbjct: 174 AIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRTGKIVELETGKVLGKHNGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ N+++VS Y + + + ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIKKDIKRNVIYVSNGYDPETQYGKIINMHGFDFITEDPWGEF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD---QGLAAGQFAAFYQG--RRCLGSGV 202
+ + T + I + E D QG+A GQ+ Y R CLGSG+
Sbjct: 293 EDEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVYDKDHRLCLGSGM 352
Query: 203 ILE 205
I++
Sbjct: 353 IID 355
>gi|313145808|ref|ZP_07808001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis 3_1_12]
gi|423279547|ref|ZP_17258460.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 610]
gi|313134575|gb|EFR51935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fragilis 3_1_12]
gi|404584870|gb|EKA89507.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 610]
Length = 353
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 54/245 (22%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FD A+GHYA + K +KDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDLTATGHYATTLQLGEKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG ++E ETG + HRG+WF+
Sbjct: 173 EIALKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIELETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI++NI++VS Y + + + F ++ P +
Sbjct: 233 TIGQRKGLGLGGGPW-FVVKKDIQDNIIYVSHGYDADKQYGYEFRMKDFNFITSNPWKDS 291
Query: 148 SQLHSVFYNCSLTIEHCE-------DGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+ V + T E + DG I+ SE QG+A GQF Y + R C
Sbjct: 292 TGEEDVTFKIRHTPEFIKGRLIQDADGYRIIS----SEKLQGIAPGQFGVIYDAESRICF 347
Query: 199 GSGVI 203
GSG I
Sbjct: 348 GSGEI 352
>gi|256839194|ref|ZP_05544704.1| tRNA methyl transferase [Parabacteroides sp. D13]
gi|256740113|gb|EEU53437.1| tRNA methyl transferase [Parabacteroides sp. D13]
Length = 358
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 46/243 (18%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA K VKDQT FL +++ Q+++L+F HL+
Sbjct: 114 DFDKIATGHYATTTEIDGKIWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R G I+E ETG L KH G+WF+
Sbjct: 174 AIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRPGKIVELETGKVLGKHNGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VS Y + + + ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITEDPWGEF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGE---DIAVVQLSEDDQGLAAGQFAAFYQGRR--CLGSGV 202
+ + T E D+ V+ E QG+A GQ++ Y CLGSG+
Sbjct: 293 EGEKEITFKIRHTPEFTHGYVRRIGDLYRVESDEKIQGIAPGQYSVIYDKDHHLCLGSGM 352
Query: 203 ILE 205
I++
Sbjct: 353 IID 355
>gi|424662395|ref|ZP_18099432.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 616]
gi|404577673|gb|EKA82410.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides fragilis HMW 616]
Length = 353
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 54/245 (22%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FD A+GHYA + K +KDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDLTATGHYATTLQLGEKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG ++E ETG + HRG+WF+
Sbjct: 173 EIALKAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIELETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI++NI++VS Y + + + F ++ P +
Sbjct: 233 TIGQRKGLGLGGGPW-FVVKKDIQDNIIYVSHGYDADKQYGYEFRMKDFNFITSNPWKDS 291
Query: 148 SQLHSVFYNCSLTIEHCE-------DGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+ V + T E + DG I+ SE QG+A GQF Y + R C
Sbjct: 292 TGEEDVTFKIRHTPEFIKGRLIQDADGYRIIS----SEKLQGIAPGQFGVIYDAESRICF 347
Query: 199 GSGVI 203
GSG I
Sbjct: 348 GSGEI 352
>gi|228470778|ref|ZP_04055626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas uenonis 60-3]
gi|228307451|gb|EEK16456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas uenonis 60-3]
Length = 376
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 106/249 (42%), Gaps = 58/249 (23%)
Query: 9 FDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
+DY+A+GHYA + + VKDQT FL+ + Q+ RL+F
Sbjct: 128 YDYIATGHYATIRQTEDGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFPIGHLPKEEVR 187
Query: 54 ------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
HLV R G I++ ETG+ + +HRG+WF+
Sbjct: 188 RIALEAHLVNAQRKDSQGICFLGQIDYNDFIERYLGTQTGDIIDHETGEKIGEHRGYWFH 247
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP---- 143
TIGQ + LGL + YVV KD+E+N+++ SR Y + + + L+ P
Sbjct: 248 TIGQRKGLGLSGGPW-YVVAKDVEHNVLYASRGYDPKTQYGTIIETEEMHWLTTDPWLWT 306
Query: 144 -PEKISQLHSVF---YNCSLT---IEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
S L F + T +EH GG + S QG+AAGQFA Y +R
Sbjct: 307 KTPSDSPLEVTFKIRHTPDFTAGRLEHLPSGGYQLVS---SVPIQGIAAGQFATIYDPQR 363
Query: 197 --CLGSGVI 203
C GS I
Sbjct: 364 QLCWGSAPI 372
>gi|365118136|ref|ZP_09336936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Tannerella sp. 6_1_58FAA_CT1]
gi|363651030|gb|EHL90113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Tannerella sp. 6_1_58FAA_CT1]
Length = 355
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 51/244 (20%)
Query: 8 EFDYVASGHYANV-----VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
+FD +A+GHYA+ + A KD VKDQT FL+ L+ Q+ +L+F +
Sbjct: 114 DFDKIATGHYADTRIIDDITYLATAKD--PVKDQTDFLAQLNHVQISKLLFPIGNMMKDE 171
Query: 56 --VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFW 85
+ + +P EG I++ E+G + KH+G+W
Sbjct: 172 VRTIALQQNLPSALRKDSQGICFLGNINYNQFIRNYLGEKEGDIIDLESGHIVGKHKGYW 231
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
F+TIGQ + LGL + +V++KD E NI++VS + ++ + +SG P
Sbjct: 232 FHTIGQRKGLGLSGGPW-FVIKKDPEQNILYVSNGSDPETQYGNILDLSGFQFISGNPLG 290
Query: 146 KISQLHSVFYNCSLTIEHCEDGGEDI--AVVQLSEDD--QGLAAGQFAAFYQ--GRRCLG 199
+S + + T E + I +V+++ D QG+A GQF Y + CL
Sbjct: 291 DLSHDTPITFKNRHTPEFTPGTIQRINNNIVRITSDKKIQGIAPGQFGVIYSYDKKLCLA 350
Query: 200 SGVI 203
SG+I
Sbjct: 351 SGII 354
>gi|329961014|ref|ZP_08299293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fluxus YIT 12057]
gi|328532300|gb|EGF59104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides fluxus YIT 12057]
Length = 355
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 104/243 (42%), Gaps = 49/243 (20%)
Query: 8 EFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLV-------- 56
EFD+ A+GHYA V +V KDQT FL+ + Q+ RL+F L
Sbjct: 113 EFDFTATGHYATTVLLDGKTWLGTAVDPIKDQTDFLAQIDYLQVSRLMFPLGGLMKQEVR 172
Query: 57 -LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ R +P EG I+E ETG L KHRG+WF+
Sbjct: 173 DIALRAGLPSARRRDSQGICFLGKINYNDFVRRFLGEREGDIIELETGKKLGKHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK- 146
TIGQ + LGL + +VV KDIE N+++VSR Y + + + F ++ P +K
Sbjct: 233 TIGQRKGLGLGGGPW-FVVRKDIEGNVIYVSRGYDTELQFGNEFRMRDFHFITDNPWKKE 291
Query: 147 ----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ--GRRCLGS 200
+ + + E +V E QG+A GQF Y R C+GS
Sbjct: 292 ENGAVEVTFKIRHTPEFMKGRLFREPEGYRIVS-DEKLQGIAPGQFGVIYDSASRLCVGS 350
Query: 201 GVI 203
G I
Sbjct: 351 GEI 353
>gi|150010344|ref|YP_001305087.1| tRNA-specific 2-thiouridylase MnmA [Parabacteroides distasonis ATCC
8503]
gi|423333153|ref|ZP_17310934.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides distasonis
CL03T12C09]
gi|205816895|sp|A6LIF1.1|MNMA_PARD8 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|149938768|gb|ABR45465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Parabacteroides distasonis ATCC 8503]
gi|409228033|gb|EKN20925.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides distasonis
CL03T12C09]
Length = 358
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 46/243 (18%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA K VKDQT FL +++ Q+++L+F HL+
Sbjct: 114 DFDKIATGHYATTTEIDGKTWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R G I+E ETG L KH G+WF+
Sbjct: 174 AIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRPGKIVELETGKVLGKHNGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VS Y + + + ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITEDPWGEF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGE---DIAVVQLSEDDQGLAAGQFAAFYQGRR--CLGSGV 202
+ + T E D+ V+ E QG+A GQ++ Y CLGSG+
Sbjct: 293 EGEKEITFKIRHTPEFTHGYIRRIGDLYRVESDEKIQGIAPGQYSVIYDKDHHLCLGSGM 352
Query: 203 ILE 205
I++
Sbjct: 353 IID 355
>gi|255012392|ref|ZP_05284518.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. 2_1_7]
gi|262382361|ref|ZP_06075498.1| tRNA methyl transferase [Bacteroides sp. 2_1_33B]
gi|298374740|ref|ZP_06984698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 3_1_19]
gi|301308423|ref|ZP_07214377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 20_3]
gi|410104025|ref|ZP_11298942.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides sp. D25]
gi|423340558|ref|ZP_17318296.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides distasonis
CL09T03C24]
gi|262295239|gb|EEY83170.1| tRNA methyl transferase [Bacteroides sp. 2_1_33B]
gi|298269108|gb|EFI10763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 3_1_19]
gi|300833893|gb|EFK64509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 20_3]
gi|409227316|gb|EKN20215.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides distasonis
CL09T03C24]
gi|409235283|gb|EKN28102.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides sp. D25]
Length = 358
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 46/243 (18%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA K VKDQT FL +++ Q+++L+F HL+
Sbjct: 114 DFDKIATGHYATTTEIDGKIWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R G I+E ETG L KH G+WF+
Sbjct: 174 AIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRPGKIVELETGKVLGKHNGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VS Y + + + ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITEDPWGEF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGE---DIAVVQLSEDDQGLAAGQFAAFYQGRR--CLGSGV 202
+ + T E D+ V+ E QG+A GQ++ Y CLGSG+
Sbjct: 293 EGEKEITFKIRHTPEFTHGYIRRIGDLYRVESDEKIQGIAPGQYSVIYDKDHHLCLGSGM 352
Query: 203 ILE 205
I++
Sbjct: 353 IID 355
>gi|313887221|ref|ZP_07820916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas asaccharolytica PR426713P-I]
gi|312923312|gb|EFR34126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas asaccharolytica PR426713P-I]
Length = 376
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 104/249 (41%), Gaps = 58/249 (23%)
Query: 9 FDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
+DY+A+GHYA + ++ VKDQT FL+ + Q+ RL+F
Sbjct: 128 YDYIATGHYATIRKTAEGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFPIGHLPKEEVR 187
Query: 54 ------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
HLV R G I++ ETG+ + +HRG+WF+
Sbjct: 188 RIALEAHLVNAQRKDSQGICFLGQINYNDFIERYLGTQTGDIIDHETGEKIGEHRGYWFH 247
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + YVV KD+E+N+++ SR Y + + + L+ P
Sbjct: 248 TIGQRKGLGLSGGPW-YVVAKDVEHNVLYASRGYDPKTQYGTIIETEEMHWLTVDPWLWT 306
Query: 148 SQLHSVFYNCSLTIEHCED-----------GGEDIAVVQLSEDDQGLAAGQFAAFY--QG 194
+ I H D GG + SE QG+AAGQFA Y Q
Sbjct: 307 ETPSDSPLEVTFKIRHTPDFTAGRLERLPSGGYQLVS---SEPIQGIAAGQFATIYDPQH 363
Query: 195 RRCLGSGVI 203
+ C GS I
Sbjct: 364 QLCWGSAPI 372
>gi|423341287|ref|ZP_17319002.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides johnsonii
CL02T12C29]
gi|409221295|gb|EKN14245.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides johnsonii
CL02T12C29]
Length = 358
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 103/243 (42%), Gaps = 46/243 (18%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA K VKDQT FL +++ Q+++L+F HL+
Sbjct: 114 DFDKIATGHYATTTEIDGKVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R G I+E ETG L KH G+WF+
Sbjct: 174 AIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRTGKIVELETGKVLGKHNGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VS Y + + ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIKKDIKRNIIYVSNGYDPETQYGKTINMHGFDFITEDPWGEF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD---QGLAAGQFAAFYQG--RRCLGSGV 202
+ + T + I + E D QG+A GQ+ Y R CLGSG+
Sbjct: 293 EDEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVYDKDHRLCLGSGM 352
Query: 203 ILE 205
I++
Sbjct: 353 IID 355
>gi|383811309|ref|ZP_09966778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 306 str. F0472]
gi|383356059|gb|EID33574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 306 str. F0472]
Length = 360
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 111/255 (43%), Gaps = 62/255 (24%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
DA ++D +A+GHYA + +S D VKDQT FL+ + QL++ I
Sbjct: 114 FDAKMGHDYDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQIYDWQLKKAI 168
Query: 53 FHLVLYPRLTI-------------------------------------PMEGIILEAETG 75
F + Y + + G I+E ETG
Sbjct: 169 FPIGHYAKNEVREIAEQEHLINARRKDSQGICFLGNIDYNEYVRRYLGEQMGDIIELETG 228
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHL 130
+ +HRG WF+TIGQ + LGL + +VV+KD+ NI++VS Y Y D H
Sbjct: 229 KKIGEHRGLWFHTIGQRKGLGLGGGPW-FVVKKDVAQNILYVSHGYDPATAYKKDFPLHD 287
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
FH + + ++ LP + ++ + T+E +G ++ +E G+A GQF
Sbjct: 288 FHFLT-EGITELPAKVTFKIRHTPEYHTATVEQLSEGK---CLIHSTESIHGVAPGQFCV 343
Query: 191 FY--QGRRCLGSGVI 203
Y Q RC GSG I
Sbjct: 344 IYDEQHHRCFGSGEI 358
>gi|359404283|ref|ZP_09197132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella stercorea DSM 18206]
gi|357560479|gb|EHJ41864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella stercorea DSM 18206]
Length = 368
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 100/244 (40%), Gaps = 50/244 (20%)
Query: 8 EFDYVASGHYANVVHSSADHK----DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI 63
E+D +A+GHYA K VKDQT FL+ + QL++ +F + Y + +
Sbjct: 125 EYDLIATGHYAQTEIDEQGRKWLVTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQKGEV 184
Query: 64 -------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
G +LE ETG + KHRG WF
Sbjct: 185 REIAEREHLINAKRKDSQGICFLGKINYNDYIRKFLGEQPGEVLELETGKLIGKHRGLWF 244
Query: 87 YTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSG 141
+TIGQ LG + YVV+KD+ NN+++VS+ + Y D H FH +L G
Sbjct: 245 HTIGQRHGLGFGGGPW-YVVKKDVANNVLYVSKGFEPRTAYKKDFPIHDFHFLTLDPW-G 302
Query: 142 LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLG 199
P + + E G+ +V E QG+A GQF Y + RC G
Sbjct: 303 EPGTSARVRFKIRHTPEYHTAVLERTGKGEFIVHADELIQGVAPGQFCVVYDEEHHRCYG 362
Query: 200 SGVI 203
SG I
Sbjct: 363 SGEI 366
>gi|406890576|gb|EKD36439.1| hypothetical protein ACD_75C01511G0002 [uncultured bacterium]
Length = 350
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 101/248 (40%), Gaps = 62/248 (25%)
Query: 11 YVASGHYANVVHSSADHK----DKPSVKDQTYFLSHLSQAQLRRLIFHL----------- 55
++A+GHYA + ++ PS KDQ+YFLS LSQ QL +++F L
Sbjct: 112 HMATGHYARLEKIGETYRLFKGIDPS-KDQSYFLSRLSQDQLAKIVFPLGGQTKESTYQF 170
Query: 56 ---------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
L RLT P E + + TG L H G + YT
Sbjct: 171 VEERGFTDFRGLESQDVCFLGDTTVGSFLETRLTGPSEEGPILSTTGKRLGTHHGLFRYT 230
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + LG+ YV E D+E N V V N F + L+G PPE+
Sbjct: 231 IGQRKGLGIASDAPLYVTELDVERNAVIVGGNDELFKQN---IQVADFHWLAGAPPEQTK 287
Query: 149 QLHSVFYNCSLTIEH--------CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+ Y + H ++GG +I SE + + GQFA Y+ LGS
Sbjct: 288 E-----YTVRIRYSHKGSAARLVLKNGGGEIV---FSEPQRAITPGQFAVVYEQDELLGS 339
Query: 201 GVILEAWD 208
G+IL +
Sbjct: 340 GIILAGGE 347
>gi|427386602|ref|ZP_18882799.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides oleiciplenus YIT
12058]
gi|425726092|gb|EKU88958.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides oleiciplenus YIT
12058]
Length = 353
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 110/253 (43%), Gaps = 71/253 (28%)
Query: 8 EFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHLV------ 56
EFD+ A+GHYA + S D K VKDQT FL+ + Q+ +L+F L
Sbjct: 113 EFDFTATGHYATTI--SKDGKIWLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQE 170
Query: 57 -------------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFW 85
R EG I+E E+G + HRG+W
Sbjct: 171 VRDIARMAGLPTARRRDSQGICFLGKINYNDFVRRFLGEREGDIVEWESGKKVGAHRGYW 230
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLS 140
F+TIGQ + LGL + +V+ KDIE N+++VSR Y Y + K H FH ++
Sbjct: 231 FHTIGQRKGLGLSGGPW-FVIRKDIEENVLYVSRGYDTQWQYGREFKMHDFH-----FIT 284
Query: 141 GLPPEKISQLHSVFYNCSLTIEHCED--------GGEDIAVVQLSEDDQGLAAGQFAAFY 192
P ++ ++ F I H + GE ++ + ++ QG+A GQF Y
Sbjct: 285 ENPWQEDKEVDVTF-----KIRHTPEFMKGKLMREGEAYRIISV-DNLQGIAPGQFGVVY 338
Query: 193 Q--GRRCLGSGVI 203
R C+GSG I
Sbjct: 339 DEASRICIGSGEI 351
>gi|323490019|ref|ZP_08095240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Planococcus donghaensis MPA1U2]
gi|323396315|gb|EGA89140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Planococcus donghaensis MPA1U2]
Length = 371
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 101/240 (42%), Gaps = 43/240 (17%)
Query: 6 SMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF-------- 53
S+ DY+A+GHYA V H+ + K + KDQTYFL+ L Q QL +++F
Sbjct: 119 SLGADYLATGHYAQVEHAENGETKMLRGKDNNKDQTYFLNQLDQHQLSKVMFPIGHMEKK 178
Query: 54 ---HLVLYPRLT-------------------------IPMEGIILEAETGDFLEKHRGFW 85
+ L L +P + +E G + H G
Sbjct: 179 KVREIALEAELATATKKDSTGICFIGERNFKEFLGQYLPAQPGQMETLEGVKMGTHDGLM 238
Query: 86 FYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
+YTIGQ Q LG+ +V+ KD+E N+++V +N + A +L S PP
Sbjct: 239 YYTIGQRQGLGIGGAGDPWFVIGKDLERNVLYVGQNIHHDALFSDSLTAVNLSFTSNTPP 298
Query: 145 EKISQLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
I + + F Y E GE A+V +E + + GQ FY G CLG G I
Sbjct: 299 SGILECTAKFRYRQQDVGVSVEFKGES-AIVTFAEPVRAITPGQAVVFYDGEECLGGGTI 357
>gi|313204968|ref|YP_004043625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paludibacter propionicigenes WB4]
gi|312444284|gb|ADQ80640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paludibacter propionicigenes WB4]
Length = 353
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 112/247 (45%), Gaps = 56/247 (22%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD A+GHYA + + K +KDQT FL+ ++ Q+ +L+F HL+
Sbjct: 113 DFDKTATGHYATTLEKNGKVYLSTAKDPIKDQTDFLAQINSLQVSKLMFPIGHLMKNEVR 172
Query: 57 -LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P G I+E ETG L KH G+WF+
Sbjct: 173 DIATKANLPSAKRQDSQGICFLGKVNYNDFIRRYLGEKSGPIVELETGKILGKHNGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE-K 146
T+GQ + LGL + YV++KD+ NIV+ S+ + + + + F ++ P E +
Sbjct: 233 TVGQRKGLGLSGGPW-YVIKKDVAANIVYASKGFDAEAQYGYEFSMRDFHFITDNPWENR 291
Query: 147 ISQLHSVFYNCSLTIEHCED--GGEDIAVVQ-----LSEDDQGLAAGQFAAFY--QGRRC 197
S++ F I H D G+ I + +E QG+A GQF Y + R C
Sbjct: 292 RSEIDVTF-----KIRHTPDFTKGKIIQTPEGYRLISTERLQGIAPGQFGVVYDAESRIC 346
Query: 198 LGSGVIL 204
+GSG I+
Sbjct: 347 VGSGEIM 353
>gi|384134715|ref|YP_005517429.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|339288800|gb|AEJ42910.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
Length = 361
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 101/240 (42%), Gaps = 46/240 (19%)
Query: 10 DYVASGHYANVVH----SSADHKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV------ 56
DY+A+GHYA V S A + + KDQTYFL L+QA LRR +F HL
Sbjct: 114 DYLATGHYAQVRREEDGSVALLRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEVRQ 173
Query: 57 ---------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+ + +P + ++E G L +H G +YTI
Sbjct: 174 IARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLPAQPGLIEDVDGRVLGEHDGLMYYTI 233
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
GQ + L L + R +VV+KD+ N++ V++ + A ++ ++ PP
Sbjct: 234 GQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSQALTADTVSFIAERPP 293
Query: 145 EKISQLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
K + + F Y E GED V E + + GQ FY G CLG G+I
Sbjct: 294 AKRFRCTAKFRYRQDDQPVEVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGEVCLGGGII 353
>gi|288802136|ref|ZP_06407577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella melaninogenica D18]
gi|288335571|gb|EFC74005.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella melaninogenica D18]
Length = 360
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 70/252 (27%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
++D +A+GHYA + +S D VKDQT FL+ + QL++ IF + Y
Sbjct: 121 DYDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQIYDWQLKKAIFPIGHYE 175
Query: 60 RLTI---------------PMEGI----------------------ILEAETGDFLEKHR 82
+ + +GI ++E ETG + +H+
Sbjct: 176 KNEVREIAERENLINAHRKDSQGICFLGNIDYNEYVRRYLGEEIGDVIELETGKKIGEHK 235
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLK 137
G WF+TIGQ + LGL + +V++KD+ NI++VS Y Y D H FH
Sbjct: 236 GLWFHTIGQRKGLGLGGGPW-FVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHF---- 290
Query: 138 LLSGLP--PEKIS--QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY- 192
L G+ PEKI+ H+ Y+ + T+E DG ++ +E+ G+A GQF Y
Sbjct: 291 LTEGITTLPEKITFKIRHTPEYHPA-TVEQLSDGR---CIIHSTENIHGVAPGQFCVVYD 346
Query: 193 -QGRRCLGSGVI 203
Q RC GSG I
Sbjct: 347 EQHHRCFGSGEI 358
>gi|302346886|ref|YP_003815184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella melaninogenica ATCC 25845]
gi|302150717|gb|ADK96978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella melaninogenica ATCC 25845]
Length = 360
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 70/252 (27%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
++D +A+GHYA + +S D VKDQT FL+ + QL++ IF + Y
Sbjct: 121 DYDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQIYDWQLKKAIFPIGHYE 175
Query: 60 RLTI---------------PMEGI----------------------ILEAETGDFLEKHR 82
+ + +GI ++E ETG + +H+
Sbjct: 176 KNEVREIAERENLINAHRKDSQGICFLGNIDYNEYVRRYLGEEIGDVIELETGKKIGEHK 235
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLK 137
G WF+TIGQ + LGL + +V++KD+ NI++VS Y Y D H FH
Sbjct: 236 GLWFHTIGQRKGLGLGGGPW-FVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHF---- 290
Query: 138 LLSGLP--PEKIS--QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY- 192
L G+ PEKI+ H+ Y+ + T+E DG ++ +E+ G+A GQF Y
Sbjct: 291 LTEGITTLPEKITFKIRHTPEYHPA-TVEQLSDGR---CIIHSTENIHGVAPGQFCVVYD 346
Query: 193 -QGRRCLGSGVI 203
Q RC GSG I
Sbjct: 347 EQHHRCFGSGEI 358
>gi|288555376|ref|YP_003427311.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus
pseudofirmus OF4]
gi|288546536|gb|ADC50419.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
pseudofirmus OF4]
Length = 367
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 50/247 (20%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA V + + S KDQTYFL+ LSQ QL + +F + P+ +
Sbjct: 123 DYVATGHYARVEEVDGEFQLLRGVDSNKDQTYFLNALSQQQLSKTMFPIGHIPKKEVREK 182
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + ++ G+ +H G +YT+G
Sbjct: 183 ALAADLATAKKKDSTGICFIGERNFKEFLSGFLPAQPGEMQTVDGEVKGQHDGLMYYTLG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q Q LG+ +V++KD+E N++ V + +++ A L +S P +
Sbjct: 243 QRQGLGIGGAGEPWFVIDKDLERNVLIVGQGFHNQGLYSEGLEAVHLNWISPTKPTSEFR 302
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI-- 203
+ F + +T+ EDGG A+V+ E ++ + GQ FY+G CLG G I
Sbjct: 303 CTAKFRYRQDDQGVTVIPQEDGG---ALVKFDEPERAITPGQAVVFYEGDVCLGGGTIDR 359
Query: 204 -LEAWDD 209
++ W++
Sbjct: 360 VIKKWEN 366
>gi|169350064|ref|ZP_02867002.1| hypothetical protein CLOSPI_00804 [Clostridium spiroforme DSM 1552]
gi|169293277|gb|EDS75410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium spiroforme DSM 1552]
Length = 387
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 116/258 (44%), Gaps = 56/258 (21%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSVK------DQTYFL---------------SHLS 44
++ DY+A+GHYA VVHS ++KD +K DQTYFL +
Sbjct: 134 TLNADYIATGHYARVVHS--ENKDSIMLKGIDNNKDQTYFLCQLNQQQLQNSLFPLGEID 191
Query: 45 QAQLRRLIFHLVL---------------------YPRLTIPME-GIILEAETGDFLEKHR 82
+ ++RRL L L + + IP + G +++ ETGD + +H
Sbjct: 192 KKEVRRLAHELQLPVADKKDSTGICFIGERDFKEFLQNYIPAQSGKMVDIETGDIIGEHS 251
Query: 83 GFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK---- 137
G +YTIGQ + LG+ +VV KD + N+++V + D+K L+ +G+L
Sbjct: 252 GIMYYTIGQRKGLGIGGPGGAWFVVGKDYDKNVLYVCQG----DQKDWLYSSGALISDVN 307
Query: 138 -LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+ S P EKIS Y + E ED + + + + GQ A FY G
Sbjct: 308 WIASNKPTEKISCNAKFRYRQADNPIKLEFIDEDKVYLTFDKPVKAVTPGQAAVFYDGDI 367
Query: 197 CLGSGVILEAWDDQGFPV 214
CLG G I + D G P+
Sbjct: 368 CLGGGTIETVYKD-GKPI 384
>gi|333378464|ref|ZP_08470195.1| tRNA-specific 2-thiouridylase mnmA [Dysgonomonas mossii DSM 22836]
gi|332883440|gb|EGK03723.1| tRNA-specific 2-thiouridylase mnmA [Dysgonomonas mossii DSM 22836]
Length = 358
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 105/241 (43%), Gaps = 46/241 (19%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
EFD +A+GHYA + K VKDQTYFL + Q+ +L+F +
Sbjct: 114 EFDKIATGHYATTTEINGKTWLSTAKDHVKDQTYFLGQIDYLQVSKLMFPIGNLLKSKVR 173
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG L KH G+W++
Sbjct: 174 AIAAQAGLPSAQRKDSQGICFLGKINYNDFIRRYLGERKGKIVELETGKILGKHDGYWYH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KD + NIV+VS Y + + + ++
Sbjct: 234 TIGQRKGLGLSGGPW-FVIKKDTKRNIVYVSNGYDPETQYGKVVNLAGFSFITEDIWGDF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIA-VVQLSEDD--QGLAAGQFAAFY--QGRRCLGSGV 202
+ + + T E E I + ++ DD QG+A+GQF Y + C+GSG+
Sbjct: 293 NGSKDITFKIRHTPEFTRGRIEKIGDLYRIYSDDKVQGIASGQFGVVYDNDSKLCIGSGM 352
Query: 203 I 203
I
Sbjct: 353 I 353
>gi|198275614|ref|ZP_03208145.1| hypothetical protein BACPLE_01783 [Bacteroides plebeius DSM 17135]
gi|198271243|gb|EDY95513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides plebeius DSM 17135]
Length = 368
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 111/254 (43%), Gaps = 59/254 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSS-----ADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
D + +D +A+GHYA+ + A KD VKDQT FL+ + Q+ RL+F L
Sbjct: 118 FDREAGQGYDKIATGHYASTLDIDGYTWLATAKD--PVKDQTDFLAQIDYLQVSRLMFPL 175
Query: 56 V---------LYPRLTIP----------------------------MEGIILEAETGDFL 78
+ + ++P G ++E ETG +
Sbjct: 176 GGFLKEEVRDMAVKASLPSARRKDSQGICFLGKINYNDFIRRFLGERPGPVVELETGKVI 235
Query: 79 EKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
+HRG+WF+TIGQ + LGL + +VV+K++E NI++VS Y + + H F
Sbjct: 236 GQHRGYWFHTIGQRKGLGLGGGPW-FVVDKNVEENIIYVSHGYDTEKQFGHFFCVKDFHF 294
Query: 139 LSGLPPEKISQLHSVFYNCSLT-------IEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
++ L P K Q + + T + EDG V E QG+A GQF
Sbjct: 295 IT-LNPWK-EQETEICFKIRHTDTFQTGKVRFAEDG---TLHVSSEEPIQGIAPGQFGVI 349
Query: 192 Y--QGRRCLGSGVI 203
Y R C+GSG I
Sbjct: 350 YDKDARLCIGSGEI 363
>gi|403282751|ref|XP_003932803.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Saimiri
boliviensis boliviensis]
Length = 421
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 112/278 (40%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSQEDEEVFQQKHIKRPEGLFRNRFEVRNPVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTIPMEGI--------- 68
T+FLS +SQ LRR IF H VL + ++ M I
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKDFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 69 --ILEAETGDFLE--------KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
L+A G F+ H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 234 LQYLQARPGQFISIEDDKVVGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSAKGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLH------SVFYNCSLTIEHCEDG 167
R L + ++ PP +K+ + H C LT+ +DG
Sbjct: 293 PRIDHPALYRDLLRTSRVHWITEEPPAALVRDKMMECHFRVRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ VQ +GLA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVQAL---RGLATGQFAVFYKGDECLGSGKILR 385
>gi|189466604|ref|ZP_03015389.1| hypothetical protein BACINT_02979 [Bacteroides intestinalis DSM
17393]
gi|189434868|gb|EDV03853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides intestinalis DSM 17393]
Length = 353
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 112/254 (44%), Gaps = 73/254 (28%)
Query: 8 EFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHLV------ 56
EFD+ A+GHYA V S D K VKDQT FL+ + Q+ +L+F L
Sbjct: 113 EFDFTATGHYATTV--SKDGKIWLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQE 170
Query: 57 ---LYPRLTIPM----------------------------EGIILEAETGDFLEKHRGFW 85
+ +P EG I+E E+G + HRG+W
Sbjct: 171 VRDIARTAGLPTARRRDSQGICFLGKINYNDFVRHFLGEREGDIVEWESGKKIGTHRGYW 230
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLS 140
F+TIGQ + LGL + +V+ KDIE N+++VSR Y Y + + H FH ++
Sbjct: 231 FHTIGQRKGLGLSGGPW-FVIRKDIEENVLYVSRGYDTQWQYGREFRMHDFH-----FIT 284
Query: 141 GLPPEKISQLHSVFYNCSLTIEH---------CEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
P ++ ++ F I H ++GG + S++ QG+A GQF
Sbjct: 285 ENPWQEAEEVDVTF-----KIRHTPEFMKGKLVQEGGNYRIIS--SDNLQGIAPGQFGVV 337
Query: 192 YQ--GRRCLGSGVI 203
Y R C+GSG I
Sbjct: 338 YDEASRICIGSGEI 351
>gi|410098401|ref|ZP_11293379.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides goldsteinii
CL02T12C30]
gi|409222275|gb|EKN15220.1| tRNA-specific 2-thiouridylase mnmA [Parabacteroides goldsteinii
CL02T12C30]
Length = 358
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 105/247 (42%), Gaps = 54/247 (21%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLVLYPRL 61
+FD +A+GHYA K VKDQT FL +++ Q+++L+F HL+
Sbjct: 114 DFDKIATGHYATTTEIDGKVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKAEVR 173
Query: 62 TIPME----------------------------------GIILEAETGDFLEKHRGFWFY 87
I E G I+E ETG L KH G+WF+
Sbjct: 174 AIAAEQKLPSAMRKDSQGICFLGKINYNDFIERYLGKRVGKIVELETGKVLGKHNGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VS Y + + ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIKKDIKRNIIYVSNGYDPETQYGKTINLHGFDFITEDPWGEF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAGQFAAFYQGRR--CL 198
+ + + I H D D+ ++ QG+A GQ+ Y CL
Sbjct: 293 TDEKEI----TFKIRHTPDFTPGRIRRIGDLYRIESENKIQGIAPGQYGVVYDKDHHLCL 348
Query: 199 GSGVILE 205
GSG+I++
Sbjct: 349 GSGMIID 355
>gi|402307086|ref|ZP_10826117.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. MSX73]
gi|400379212|gb|EJP32058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. MSX73]
Length = 359
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 108/256 (42%), Gaps = 66/256 (25%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
DA ++D +A+GHYA + +S D VKDQT FL+ + QLR+ I
Sbjct: 115 FDAKMGYDYDLIATGHYAQTEWIDGRKWLVTSPD-----PVKDQTDFLAQIYDWQLRKAI 169
Query: 53 F-----------------HLV--------------------LYPRLTIPMEGIILEAETG 75
F HLV R G ++E ETG
Sbjct: 170 FPIGHYMKDEVREIAGREHLVNAKRRDSQGICFLGQINYNEYLRRYLGEQPGDVIELETG 229
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHL 130
+ +HRG WF+TIGQ + LG + +VV+KD+ N+++VS Y Y D + H
Sbjct: 230 KTIGEHRGLWFHTIGQRKGLGFGGGPW-FVVKKDVGRNVLYVSHGYDPQTAYKQDFRMHD 288
Query: 131 FHAGSLKLLSGLPPEKIS-QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
FH L + + E+I+ ++ T+E +G I V G+A GQF
Sbjct: 289 FHV----LTAPIDSERITFKIRHTPDYLPATVEKTSEG---IYTVHADAPIHGVAPGQFC 341
Query: 190 AFY--QGRRCLGSGVI 203
Y Q RC GSG I
Sbjct: 342 VVYDEQHHRCFGSGEI 357
>gi|150002999|ref|YP_001297743.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482]
gi|294775633|ref|ZP_06741142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides vulgatus PC510]
gi|319642281|ref|ZP_07996940.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_1_40A]
gi|345518172|ref|ZP_08797627.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 4_3_47FAA]
gi|205810256|sp|A6KXF7.1|MNMA1_BACV8 RecName: Full=tRNA-specific 2-thiouridylase MnmA 1
gi|149931423|gb|ABR38121.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides vulgatus ATCC 8482]
gi|254836440|gb|EET16749.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 4_3_47FAA]
gi|294450575|gb|EFG19066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides vulgatus PC510]
gi|317386137|gb|EFV67057.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_1_40A]
Length = 354
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL---------- 55
+D A+GHYA+++ + VKDQT FL+ + Q+ +L+F L
Sbjct: 114 YDKTATGHYASILEKDGKIWLGTAQDPVKDQTDFLAQIDYLQISKLMFPLGGLMKNEVRD 173
Query: 56 ---------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG I+E ETG + H+G+WF+T
Sbjct: 174 IARIAKLPSAQRKDSQGICFLGKINYNEFLRRFLGEKEGDIIEMETGKRIGTHKGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGLP 143
IGQ + LGL + +V+ KDI+ NI++VS Y Y D H FH + L G P
Sbjct: 234 IGQRKGLGLGGGPW-FVIRKDIDENIIYVSHGYDTDKQYGTDFALHDFHFITEDLWKGAP 292
Query: 144 PEKIS---QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+S + F LT E +++ + QG+A GQF Y C+
Sbjct: 293 SADVSFKIRHTDTFMKGILTRE------DNLFRIHSHVPLQGIAPGQFGVLYDKNAEICV 346
Query: 199 GSGVI 203
GSG I
Sbjct: 347 GSGEI 351
>gi|402847450|ref|ZP_10895736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas sp. oral taxon 279 str. F0450]
gi|402266393|gb|EJU15828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas sp. oral taxon 279 str. F0450]
Length = 390
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 113/260 (43%), Gaps = 63/260 (24%)
Query: 8 EFDYVASGHYANVVHSS-----ADHKDKPSVKDQTYFLSHLSQAQLRRLIF--------- 53
+FD++A+GHYA A D VKDQT FL+ ++ Q+ +L+F
Sbjct: 134 DFDFIATGHYATTTFVGDQLYLATAPD--PVKDQTDFLAQINFRQVSKLLFPTGHLLKSE 191
Query: 54 --------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFW 85
HL+ R EG+I+E ETG L KH+G+W
Sbjct: 192 VRRIAEEAHLLSANRKDSQGICFLGKVNYNEFIERALGQKEGLIIERETGKILGKHKGYW 251
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
F+TIGQ + LGL + +VV+K+I NI+ VS+ Y D+ + +S P +
Sbjct: 252 FHTIGQRKGLGLSGGPW-FVVKKNIRRNIILVSQGYDPADQYGEHIGMETCDFISHDPWQ 310
Query: 146 KISQLHSV--------FYNCSLTIEHCEDGGE-----DIA---VVQLSEDDQGLAAGQFA 189
+++ + + + H D D A +++ E QG+A GQ+A
Sbjct: 311 YAAEVQGLDAPLSREESVEITFKVRHTPDFTRGRLSYDPASGYLIESEEPIQGIAPGQYA 370
Query: 190 AFY--QGRRCLGSGVILEAW 207
Y + R C GSG+I +
Sbjct: 371 VLYDTEHRICFGSGMITRGF 390
>gi|332259082|ref|XP_003278617.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Nomascus
leucogenys]
Length = 421
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 110/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H KP S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFQQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKAFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 234 LQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H FY+ C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTSRVHWITEEPPAALVRDKMMECHFRFYHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ Q + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAAQAV---RALATGQFAVFYKGDECLGSGKILR 385
>gi|429327447|gb|AFZ79207.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase,
putative [Babesia equi]
Length = 699
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 121/298 (40%), Gaps = 99/298 (33%)
Query: 8 EFDYVASGHYANVVHS--SADHKD-----KPSV--------------------------- 33
EFDYVASGHYA + + S DH + P +
Sbjct: 400 EFDYVASGHYARIKNDIVSKDHPEIDLMGSPEILDILEGCKYDSRGFYNIRRLCLSRDIN 459
Query: 34 KDQTYFLSHLSQAQLRRLIF--------------HLVLYP-------------------- 59
KDQTYFLS L Q+QL +LIF + V+ P
Sbjct: 460 KDQTYFLSRLKQSQLSKLIFPIGDFEKKKVRDIANTVMLPTRDRKDSVGLCFLGNVHLSS 519
Query: 60 ---RLTIPMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYI-----VYRYVVEKDIE 111
R +G I++ ++ + +H G + YTIGQ + + V R+VV+KD+E
Sbjct: 520 FLTRQIGESKGPIIDNDSMKIIGEHSGLYNYTIGQKERINQCIFKGNPEVVRHVVKKDVE 579
Query: 112 NNIVFVSRNYYSF-----DKKRHLFHAGSLKLL----------------SGLPPE-KISQ 149
N ++V+ +Y S D R +FH ++ + GL + +
Sbjct: 580 TNTLYVTSSYNSPKYLKPDGIRSIFHVNDIRWIVPDFRGILNRVACNDAGGLVHKLNVKL 639
Query: 150 LHSV-FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206
HS F C + + + A ++L+ D G++ GQ+AAFY +C+G+ ++ A
Sbjct: 640 RHSPNFRACLANFDQSSNLRLNSAFIKLNTADSGISTGQYAAFYVNDQCIGASKMITA 697
>gi|377557347|ref|ZP_09786997.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus gastricus PS3]
gi|376165753|gb|EHS84694.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus gastricus PS3]
Length = 377
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 105/253 (41%), Gaps = 55/253 (21%)
Query: 10 DYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIP 64
DY+A+GHYA++ AD K K KDQTYFLS L AQL R++F L Y + I
Sbjct: 122 DYIATGHYADL-KRDADGKMHLMQAKDQNKDQTYFLSQLDHAQLDRVMFPLANYTKPEIR 180
Query: 65 M---------------EGIILEAETGDF----------------------LEKHRGFWFY 87
GI E G+F + +H G +Y
Sbjct: 181 QIAKEAGLVNAKKKDSVGICFIGEDGNFRNFLSQYLPAQPGEMQTTDGKVVGQHAGLMYY 240
Query: 88 TIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP 143
TIGQ + LGL +VV KD NI++V + Y + + A + + +P
Sbjct: 241 TIGQRKGLGLGGTKENNDPWFVVGKDQAQNILYVGQGYDNENLIATHLEASDIHWVDDVP 300
Query: 144 PEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
+ H + +T++ +D + V+ E + + GQ FY G+ C
Sbjct: 301 ATYGTTFHCTAKFRYRQKDVGVTVKLSDDQSQ--VTVEFDEPARSITPGQAVVFYDGQEC 358
Query: 198 LGSGVILEAWDDQ 210
LGS +I A+ +Q
Sbjct: 359 LGSAIIDRAYHEQ 371
>gi|429726426|ref|ZP_19261224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 473 str. F0040]
gi|429146658|gb|EKX89707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 473 str. F0040]
Length = 370
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 107/261 (40%), Gaps = 72/261 (27%)
Query: 9 FDYVASGHYANVVHSSADHKDKPS-------------------VKDQTYFLS-------- 41
+D + +GHYA VV D S +KDQT FL+
Sbjct: 114 YDRICTGHYARVVRDDEVFADPRSGESIDLSSSASWLGTAPDPIKDQTDFLAQLDAHQVG 173
Query: 42 -------HLSQAQLRRLIFHLVLYPRLTIPMEGI----------------------ILEA 72
HL + Q+R++ L P +GI ++E
Sbjct: 174 KIMLPLGHLRKEQVRQIALDNKLAPARRKDSQGICFLGKINYNDFVRRFLGERVGDVIEL 233
Query: 73 ETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFH 132
ETG + +HRG+WF+TIGQ + LGL + +VV+KD+E NI++VS Y + + F+
Sbjct: 234 ETGKKVGEHRGYWFHTIGQRKGLGLGGGPW-FVVKKDLEQNILYVSHGYDNLLQYGRSFN 292
Query: 133 AGSLKLLSGLPPEKISQLHSVFYN------CSLTIEHCEDGGEDIAVVQLSEDD--QGLA 184
L+G P + F + + E+GG + DD QG+A
Sbjct: 293 IAGFHFLTGDPWPSSGSIDVTFKVRHTDRWRTGVLTRTEEGG-----FHIDGDDPIQGIA 347
Query: 185 AGQFAAFY--QGRRCLGSGVI 203
GQF Y GR C+GSG I
Sbjct: 348 PGQFGVVYSRDGRICIGSGEI 368
>gi|423314900|ref|ZP_17292832.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides vulgatus
CL09T03C04]
gi|392681082|gb|EIY74444.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides vulgatus
CL09T03C04]
Length = 354
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL---------- 55
+D A+GHYA+++ + VKDQT FL+ + Q+ +L+F L
Sbjct: 114 YDKTATGHYASILEKDGKIWLGTAQDPVKDQTDFLAQIDYLQISKLMFPLGGLMKNEVRD 173
Query: 56 ---------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG I+E ETG + H+G+WF+T
Sbjct: 174 IARIAKLPSAQRKDSQGICFLGKINYNEFLCRFLGEKEGDIIEMETGKRIGTHKGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGLP 143
IGQ + LGL + +V+ KDI+ NI++VS Y Y D H FH + L G P
Sbjct: 234 IGQRKGLGLGGGPW-FVIRKDIDENIIYVSHGYDTDKQYGTDFALHDFHFITEDLWKGAP 292
Query: 144 PEKIS---QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+S + F LT E +++ + QG+A GQF Y C+
Sbjct: 293 SADVSFKIRHTDTFMKGILTRE------DNLFRIHSHVPLQGIAPGQFGVLYDKNAEICV 346
Query: 199 GSGVI 203
GSG I
Sbjct: 347 GSGEI 351
>gi|325269460|ref|ZP_08136077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella multiformis DSM 16608]
gi|324988381|gb|EGC20347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella multiformis DSM 16608]
Length = 360
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 113/249 (45%), Gaps = 66/249 (26%)
Query: 9 FDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60
+D +A+GHYA + +S D VKDQT FL+ + QL++ +F + Y +
Sbjct: 122 YDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQIYDWQLKKAVFPIGHYEK 176
Query: 61 LTI-------------------------------------PMEGIILEAETGDFLEKHRG 83
+ G I+E ETG + +HRG
Sbjct: 177 DEVRRIAEQEHLINAHRKDSQGICFLGNIDYNEYVRRYLGEQPGDIIELETGKKIGEHRG 236
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKL 138
WF+TIGQ + LGL + +VV KD+ NI++VS Y Y D H FH + +
Sbjct: 237 LWFHTIGQRKGLGLGGGPW-FVVRKDVVQNILYVSHGYDPETAYKSDFPLHDFHYLT-EG 294
Query: 139 LSGLPPEKIS--QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG-- 194
++GL PEKI+ H+ Y+ + T+E DG +++ +E G+A GQF Y
Sbjct: 295 VTGL-PEKITFKIRHTPEYHPA-TVEQLPDGK---SIIHSAEPIHGVAPGQFCVVYDECH 349
Query: 195 RRCLGSGVI 203
RC GSG I
Sbjct: 350 HRCYGSGEI 358
>gi|433652480|ref|YP_007296334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella dentalis DSM 3688]
gi|433303013|gb|AGB28828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella dentalis DSM 3688]
Length = 360
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 108/249 (43%), Gaps = 62/249 (24%)
Query: 9 FDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF------- 53
+D +A+GHYA + +S D VKDQT FL+ + Q QL++ IF
Sbjct: 122 YDLIATGHYAQTEWIDDRKWLTTSPD-----PVKDQTDFLAQIYQWQLKKAIFPIGHFEK 176
Query: 54 ----------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRG 83
HL+ R + G I+E ETG + +HRG
Sbjct: 177 NEVREIAEREHLINARRKDSQGICFLGNIDYNEYVRRYLGELPGDIVEQETGKKIGEHRG 236
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL---- 139
WF+TIGQ + LGL + +V+ KD+ N ++VS Y D + F L
Sbjct: 237 LWFHTIGQRKGLGLGGGPW-FVIRKDVARNTLYVSHGYDPQDAYKQDFPIHGFDFLTEGV 295
Query: 140 SGLPPEKISQL-HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRR 196
S LP E ++ H+ Y+ + H E GE ++ ++ G+A GQF Y Q +
Sbjct: 296 SDLPREVTFKIRHTPEYHPA----HTERIGEGQYLIHSAKPIHGVAPGQFCVVYDEQHHK 351
Query: 197 CLGSGVILE 205
C GSG I E
Sbjct: 352 CYGSGEICE 360
>gi|342213693|ref|ZP_08706415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Veillonella sp. oral taxon 780 str. F0422]
gi|341597718|gb|EGS40260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Veillonella sp. oral taxon 780 str. F0422]
Length = 353
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 97/245 (39%), Gaps = 54/245 (22%)
Query: 6 SMEFDYVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60
S+ ++ +GHYA V+++ A HK KDQ+Y L L+Q L+ L+F L P+
Sbjct: 112 SLGATHMVTGHYAQVMYNEAAQRYELHKGDDPTKDQSYVLYTLTQDILKHLVFPLGNQPK 171
Query: 61 LTI---------------------------------------PMEGIILEAETGDFLEKH 81
P G I+ E G+ L H
Sbjct: 172 TKTREMAHEKELPVWDKPDSLDICFLPNHNYQGFIEKTSKSKPKSGRIVH-ENGEVLGTH 230
Query: 82 RGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
G + YTIGQ + LG+ Y YVV+ D E N V V N F + + L G
Sbjct: 231 NGLYNYTIGQRKGLGIAYAYPLYVVKLDGETNEVIVGPNESLFSRT---MLCNNYNFLDG 287
Query: 142 LPPEKISQLHSVFYNCS---LTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
+ P + + Y T+ EDG V+ +E + + GQ FY+G R L
Sbjct: 288 VVPTSLQAEGKIRYAAKPSPCTVTFTEDG---TMKVEFTEPQRAITPGQSVVFYEGSRVL 344
Query: 199 GSGVI 203
G GVI
Sbjct: 345 GGGVI 349
>gi|298384487|ref|ZP_06994047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 1_1_14]
gi|298262766|gb|EFI05630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides sp. 1_1_14]
Length = 355
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 105/247 (42%), Gaps = 59/247 (23%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL---------V 56
FD+ A+GHYA + K VKDQT FL+ + Q+ +L+F +
Sbjct: 114 FDFTATGHYATTIRQDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVRE 173
Query: 57 LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFYT 88
+ R +P EG I+E ETG + HRG+WF+T
Sbjct: 174 IASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEREGAIIELETGKKVGTHRGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + LGL + +V++KD+E NI++VS Y + F ++ E +
Sbjct: 234 IGQRKGLGLSGGPW-FVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFIT----ENLW 288
Query: 149 QLHSVFYNCSLTIEHC----------EDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRR 196
+ + + I H E+GG+ + SE QG+A GQF Y +
Sbjct: 289 KDAGKEIDITFKIRHTPEFTKGKLVQEEGGQ--FRILSSEKLQGIAPGQFGVIYDEEAGI 346
Query: 197 CLGSGVI 203
C+GSG I
Sbjct: 347 CVGSGEI 353
>gi|315607764|ref|ZP_07882757.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccae ATCC 33574]
gi|315250233|gb|EFU30229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccae ATCC 33574]
Length = 359
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 107/255 (41%), Gaps = 64/255 (25%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
DA ++D +A+GHYA + +S D VKDQT FL+ + QLR+ I
Sbjct: 115 FDAKMGHDYDLIATGHYAQTEWIDGRKWLVTSPD-----PVKDQTDFLAQIYDWQLRKAI 169
Query: 53 F-----------------HLV--------------------LYPRLTIPMEGIILEAETG 75
F HLV R G ++E ETG
Sbjct: 170 FPIGHYMKDEVREIAGREHLVNAKRRDSQGICFLGQINYNEYLRRYLGEQPGDVIELETG 229
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHL 130
+ +HRG WF+TIGQ + LG + +VV+KD+ N+++VS Y Y D + H
Sbjct: 230 KTIGEHRGLWFHTIGQRKGLGFGGGPW-FVVKKDVGRNVLYVSHGYDPQTAYKQDFRMHD 288
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
FH + + S KI H+ Y T+E +G I V G+A GQF
Sbjct: 289 FHVLTTPIDSERVTFKIR--HTPDY-LPATVEKTSEG---IYTVHADAPIHGVAPGQFCV 342
Query: 191 FY--QGRRCLGSGVI 203
Y Q RC GSG I
Sbjct: 343 VYDEQHHRCFGSGEI 357
>gi|167763337|ref|ZP_02435464.1| hypothetical protein BACSTE_01711 [Bacteroides stercoris ATCC
43183]
gi|167698631|gb|EDS15210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacteroides stercoris ATCC 43183]
Length = 365
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 102/244 (41%), Gaps = 54/244 (22%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
FD+ A+GHYA V + VKDQT FL+ + Q+ +L+F L
Sbjct: 114 FDFTATGHYATTVLQNGKTWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEVRD 173
Query: 57 ----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG I+E ETG L HRG+WF+T
Sbjct: 174 IALKAQLPSARRRDSQGICFLGRINYNDFVRRFLGEKEGRIVELETGKILGTHRGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + LGL + +VV KD + N+++VS Y + + H F ++ P E I
Sbjct: 234 IGQRKGLGLSGGPW-FVVRKDTDENVIYVSHGYDTELQYGHEFSMQDFHFITENPWEGIK 292
Query: 149 QLHSVFYNCSLTIEHCED--GG---EDIAVVQLSEDD--QGLAAGQFAAFYQ--GRRCLG 199
V + I H GG +D ++ D+ QG+A GQF Y + C+G
Sbjct: 293 DEIPV----TFKIRHAPGFIGGRLWQDETGYRIVSDEKLQGIAPGQFGVVYDEAAKLCIG 348
Query: 200 SGVI 203
SG I
Sbjct: 349 SGEI 352
>gi|407893522|ref|ZP_11152552.1| tRNA-specific 2-thiouridylase MnmA [Diplorickettsia massiliensis
20B]
Length = 352
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 99/248 (39%), Gaps = 61/248 (24%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
D++A+GHYA + H + K + + KDQTYFL L Q L+R +F L + + +
Sbjct: 113 DFIATGHYAGITHQDTHYLLSKSRDTNKDQTYFLYTLGQTPLKRTLFPLANHLKTEVRTL 172
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P ++E TG + +H G +YT+G
Sbjct: 173 AKAAGLPTHAKKDSTGICFIGERKFRQFLAHYLPATPGLIETPTGQVIGEHHGLMYYTLG 232
Query: 91 QHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
Q Q LG+ YV+ K ++ N++ V++ H L ++G P
Sbjct: 233 QRQGLGIGGQKNASEQPWYVIAKYVDRNVLVVAQGKNHPALYAHTLRCAQLHWVTGEKP- 291
Query: 146 KISQLHSVFYNCSLTIEH---------CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+ Y C+ I + E+ + + VV SE + GQ FYQG
Sbjct: 292 ------TFPYRCTAKIRYRQEETPCFLTEESADSLQVV-FSEAQWAITPGQSVVFYQGPY 344
Query: 197 CLGSGVIL 204
CLG G+IL
Sbjct: 345 CLGGGIIL 352
>gi|299141829|ref|ZP_07034964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oris C735]
gi|298576680|gb|EFI48551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oris C735]
Length = 366
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 108/251 (43%), Gaps = 63/251 (25%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF------ 53
++D +A+GHYA + +S D VKDQT FL+ + QLR+ IF
Sbjct: 122 DYDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQIYGWQLRKAIFPIGHFE 176
Query: 54 -----------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHR 82
HL+ R G ++E ETG + +H+
Sbjct: 177 KNEVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRYLGESVGDVIELETGKKIGEHK 236
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGS-L 136
G WF+TIGQ + LG + +VV+KD+E NI++VS Y Y D K H FHA +
Sbjct: 237 GLWFHTIGQRKGLGFGGGPW-FVVKKDVERNILYVSHGYDPETAYKQDFKIHDFHATTYC 295
Query: 137 KLLSGLP--PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY-- 192
+ LP PE+I+ + + E GE+ V+ G+A GQF Y
Sbjct: 296 PEGTALPELPERIT--FKIRHTPEYLPATIEKTGENAYVIHADSKIHGVAPGQFCVVYDA 353
Query: 193 QGRRCLGSGVI 203
Q C GSG I
Sbjct: 354 QHHYCYGSGEI 364
>gi|340347579|ref|ZP_08670687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella dentalis DSM 3688]
gi|339609275|gb|EGQ14150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella dentalis DSM 3688]
Length = 398
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 108/249 (43%), Gaps = 62/249 (24%)
Query: 9 FDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF------- 53
+D +A+GHYA + +S D VKDQT FL+ + Q QL++ IF
Sbjct: 160 YDLIATGHYAQTEWIDDRKWLTTSPD-----PVKDQTDFLAQIYQWQLKKAIFPIGHFEK 214
Query: 54 ----------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRG 83
HL+ R + G I+E ETG + +HRG
Sbjct: 215 NEVREIAEREHLINARRKDSQGICFLGNIDYNEYVRRYLGELPGDIVEQETGKKIGEHRG 274
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL---- 139
WF+TIGQ + LGL + +V+ KD+ N ++VS Y D + F L
Sbjct: 275 LWFHTIGQRKGLGLGGGPW-FVIRKDVARNTLYVSHGYDPQDAYKQDFPIHGFDFLTEGV 333
Query: 140 SGLPPEKISQL-HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRR 196
S LP E ++ H+ Y+ + H E GE ++ ++ G+A GQF Y Q +
Sbjct: 334 SDLPREVTFKIRHTPEYHPA----HTERIGEGQYLIHSAKPIHGVAPGQFCVVYDEQHHK 389
Query: 197 CLGSGVILE 205
C GSG I E
Sbjct: 390 CYGSGEICE 398
>gi|288924750|ref|ZP_06418687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccae D17]
gi|288338537|gb|EFC76886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccae D17]
Length = 353
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 107/255 (41%), Gaps = 64/255 (25%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
DA ++D +A+GHYA + +S D VKDQT FL+ + QLR+ I
Sbjct: 109 FDAKMGHDYDLIATGHYAQTEWIDGRKWLVTSPD-----PVKDQTDFLAQIYDWQLRKAI 163
Query: 53 F-----------------HLV--------------------LYPRLTIPMEGIILEAETG 75
F HLV R G ++E ETG
Sbjct: 164 FPIGHYMKDEVREIAEREHLVNAKRRDSQGICFLGQINYNEYLRRYLGEQPGDVIELETG 223
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHL 130
+ +HRG WF+TIGQ + LG + +VV+KD+ N+++VS Y Y D + H
Sbjct: 224 KTIGEHRGLWFHTIGQRKGLGFGGGPW-FVVKKDVGRNVLYVSHGYDPQTAYKQDFRMHD 282
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
FH + + S KI H+ Y T+E +G I V G+A GQF
Sbjct: 283 FHVLTAPIDSERVTFKIR--HTPDY-LPATVEKTSEG---IYTVHADAPIHGVAPGQFCV 336
Query: 191 FY--QGRRCLGSGVI 203
Y Q RC GSG I
Sbjct: 337 VYDEQHHRCFGSGEI 351
>gi|258510943|ref|YP_003184377.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257477669|gb|ACV57988.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 365
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 101/240 (42%), Gaps = 46/240 (19%)
Query: 10 DYVASGHYANVVH----SSADHKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV------ 56
DY+A+GHYA V + A + + KDQTYFL L+QA LRR +F HL
Sbjct: 118 DYLATGHYAQVRKDEDGTVALLRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEVRQ 177
Query: 57 ---------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+ + +P + ++E G L +H G +YTI
Sbjct: 178 IARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLPAQPGLIEDVDGRVLGEHDGLMYYTI 237
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
GQ + L L + R +VV+KD+ N++ V++ + A ++ ++ PP
Sbjct: 238 GQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALTADTVSFVAERPP 297
Query: 145 EKISQLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
K + + F Y E GED V E + + GQ FY G CLG G+I
Sbjct: 298 AKRFRCTAKFRYRQDEQPVEVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGEVCLGGGII 357
>gi|373500509|ref|ZP_09590890.1| tRNA methyl transferase [Prevotella micans F0438]
gi|371953443|gb|EHO71268.1| tRNA methyl transferase [Prevotella micans F0438]
Length = 360
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 107/251 (42%), Gaps = 54/251 (21%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
D ++D +A+GHYA + +S D VKDQT FL+ + QL++ I
Sbjct: 114 FDRKCGHKYDIIATGHYAQTKWINGRKWLCTSPD-----PVKDQTDFLAQIYSWQLQKAI 168
Query: 53 F-----------------HLV-------------------LYPRLTIPME-GIILEAETG 75
F HL+ Y R + + G ++E ETG
Sbjct: 169 FPIGHLEKHEVRSIAEREHLINARRKDSQGICFLGNIDYNEYLRRYLGEQLGNVIELETG 228
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+ +HRG WF+TIGQ + LGL + +VV+KD NI+FVS Y ++LF
Sbjct: 229 RIIGQHRGHWFHTIGQRKGLGLGGGPW-FVVKKDTAENILFVSHGYDPATAYKNLFRIHD 287
Query: 136 LKLLSGLPPEKISQL-HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY-- 192
L L+ P + + + + H E E A++ ++ G+A GQF Y
Sbjct: 288 LHWLTITPETHTTPITFKIRHTPEFHRAHLEIQAEGTALIYSDDNIHGVAPGQFCVIYDE 347
Query: 193 QGRRCLGSGVI 203
Q RC GS I
Sbjct: 348 QHNRCYGSAEI 358
>gi|350583694|ref|XP_003126013.2| PREDICTED: hypothetical protein LOC100521087 [Sus scrofa]
Length = 851
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 111/277 (40%), Gaps = 81/277 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S KDQ
Sbjct: 544 AVDNLGADAVATGHYARTSQEDEEVFRQKHIRRPEGLFRNRFEVRSAVKLLQAADSFKDQ 603
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR +F H VL + ++
Sbjct: 604 TFFLSQVSQDALRRTLFPLGGLTKAFVKKIAAENRLHHVLQKKESMGICFVGKRNFEDFI 663
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++G L + YVVEKD + V V+
Sbjct: 664 LQYLQPRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPW-YVVEKDSASGDVLVA 722
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L G + ++ PP +K+ H F + C LT+ +DG
Sbjct: 723 PRTDHPALYRDLLRTGRVHWIAEEPPAALVRDKMMACHFRFRHQMALVPCVLTLN--QDG 780
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+ V E + LA GQFA FY+G CLGSG IL
Sbjct: 781 TVWVTAV---EAVRALALGQFAVFYKGDECLGSGKIL 814
>gi|281423882|ref|ZP_06254795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oris F0302]
gi|281401970|gb|EFB32801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oris F0302]
Length = 366
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 108/252 (42%), Gaps = 65/252 (25%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF------ 53
++D +A+GHYA + +S D VKDQT FL+ + QLR+ IF
Sbjct: 122 DYDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQIYGWQLRKTIFPIGHFE 176
Query: 54 -----------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHR 82
HL+ R G ++E ETG + +H+
Sbjct: 177 KNEVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRYLGESVGDVIELETGKKIGEHK 236
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGS-L 136
G WF+TIGQ + LG + +VV+KD+E NI++VS Y Y D K H FHA +
Sbjct: 237 GLWFHTIGQRKGLGFSGGPW-FVVKKDVERNILYVSHGYDPETAYKLDFKIHDFHATTYC 295
Query: 137 KLLSGLP--PEKIS-QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
+ LP PE+I+ ++ T+E GE V+ G+A GQF Y
Sbjct: 296 PEGTALPELPERITFKIRHTPEYLPATLERI---GEKTYVIHADNKIHGVAPGQFCVVYD 352
Query: 194 GRR--CLGSGVI 203
C GSG I
Sbjct: 353 AHHHYCYGSGEI 364
>gi|313123455|ref|YP_004033714.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280018|gb|ADQ60737.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 375
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 99/251 (39%), Gaps = 47/251 (18%)
Query: 6 SMEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYP 59
+++ DY+A GHYA + + H +P KDQTYFLS L+Q Q++R++F L + P
Sbjct: 118 ALDADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKP 177
Query: 60 RLT----------------------------------IPMEGIILEAETGDFLEKHRGFW 85
+ +P +G + G + H G
Sbjct: 178 EVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPDGKVVGHHAGLM 237
Query: 86 FYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
+YTIGQ Q LGL +VV KD+E N + V + Y S A + +G
Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMTFFTG 297
Query: 142 LPPEKISQLHSV---FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
P E + + C + + A V E + + GQ Y G CL
Sbjct: 298 NPEEDTEFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLYNGEECL 357
Query: 199 GSGVILEAWDD 209
G G I +A+ D
Sbjct: 358 GGGNIDDAFKD 368
>gi|281420586|ref|ZP_06251585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella copri DSM 18205]
gi|281405359|gb|EFB36039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella copri DSM 18205]
Length = 360
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 109/245 (44%), Gaps = 59/245 (24%)
Query: 9 FDYVASGHYANVVHSSADHKDK------PSVKDQTYFLSHLSQAQLRRLIF--------- 53
+D +A+GHYA + ++ DK VKDQT FL+ + QL++ IF
Sbjct: 123 YDLIATGHYAQT--ETDENGDKWLVTSPDPVKDQTDFLAQIESWQLKKAIFPIGHHIKNE 180
Query: 54 --------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFW 85
HL+ R G ++E ETG + +H+G W
Sbjct: 181 VREIAEEEHLINAKRKDSQGICFLGQINYNDYIRRYLGEKPGDVIEMETGKRIGEHKGLW 240
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLS 140
F+TIGQ + LG + +V++KD+ENNI++VS Y Y D H FH + ++
Sbjct: 241 FHTIGQRKGLGFGGGPW-FVIKKDVENNILYVSHGYDPQSAYKKDFPLHDFHFLTREVAM 299
Query: 141 GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
KI H+ Y+ + TIE EDG ++ E G+A GQF Y RC
Sbjct: 300 QKVTFKIR--HTPEYHPA-TIEKLEDGR---WMIHSEEAIHGVAPGQFCVVYDEHHHRCY 353
Query: 199 GSGVI 203
GSG I
Sbjct: 354 GSGEI 358
>gi|410658379|ref|YP_006910750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dehalobacter sp. DCA]
gi|410661364|ref|YP_006913735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dehalobacter sp. CF]
gi|409020734|gb|AFV02765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dehalobacter sp. DCA]
gi|409023720|gb|AFV05750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dehalobacter sp. CF]
Length = 358
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 102/250 (40%), Gaps = 66/250 (26%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV--------KDQTYFLSHLSQAQLRRLIFHLVLYPRL 61
DY+A+GHY V D K + V KDQ+Y L HL+Q QL F L Y +
Sbjct: 119 DYIATGHY---VRKEYDDKTQQWVLKAGIDETKDQSYALYHLTQDQLAHTFFPLGEYRKA 175
Query: 62 TIPM----EGI------------ILEAETGDFLE---------------------KHRGF 84
+ EG+ +E GDF+E +H+G
Sbjct: 176 DVRQIAEGEGLAVAKKAESQDICFVEGTAGDFIEGYRQLKNVQGVIVDSRGMILGRHKGI 235
Query: 85 WFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAG----SLKLLS 140
+ YT+GQH+ LGL YV D E N + V K LF +G ++ +S
Sbjct: 236 YRYTVGQHKGLGLALGFPVYVTSIDAETNTIRVG-------SKDELFSSGLHVENVHYIS 288
Query: 141 GLPPEKISQ-LHSVFYNC---SLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
G+ PE+I L + YN S + E+G AVV E + + GQ FY G
Sbjct: 289 GVFPEQIQNILVKIRYNAPKVSAVVNSLENG---TAVVIFGEKQRAVTPGQAVVFYDGES 345
Query: 197 CLGSGVILEA 206
LG G I E
Sbjct: 346 VLGGGTIRET 355
>gi|296192066|ref|XP_002743906.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1
[Callithrix jacchus]
Length = 421
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 109/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSQEDGEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTIPM------------ 65
T+FLS +SQ LRR IF H VL + ++ M
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKDFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 66 -------EGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 234 LQYLPSRPGQFISIEDHKVLGTHKGWFLYTLGQRANIGGLRAPW-YVVEKDSAKGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRLDHPALYRDLLRTSRVHWITEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ VQ LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVQAV---HALATGQFAVFYKGGECLGSGKILR 385
>gi|282878172|ref|ZP_06286968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccalis ATCC 35310]
gi|281299590|gb|EFA91963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella buccalis ATCC 35310]
Length = 360
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 111/252 (44%), Gaps = 58/252 (23%)
Query: 1 MDAISSMEFDYVASGHYAN--VVHSSADHKDKPS-VKDQTYFLSHLSQAQLRRLIF---- 53
DA ++D +A+GHYA V+ P VKDQT FL+ + QL++ +F
Sbjct: 116 FDAKVGHQYDLIATGHYAQTEVIDGKKWLVTSPDPVKDQTDFLAQIYDWQLKKALFPIGH 175
Query: 54 -------------HLV--------------------LYPRLTIPMEGIILEAETGDFLEK 80
HLV R G ++E ETG + +
Sbjct: 176 YQKNEVREIAEREHLVNAKRRDSQGICFLGQIDYNEYLRRYLGEKHGDVIELETGKKIGE 235
Query: 81 HRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGS 135
HRG WF+TIGQ LG + +VV+KD++ N+++VSR Y Y D K H FH
Sbjct: 236 HRGLWFHTIGQRHGLGFGGGPW-FVVKKDVQANVLYVSRGYDPKTAYKSDFKVHDFHF-- 292
Query: 136 LKLLSGLPPEKIS--QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY- 192
L L E I+ H+ Y+ + TIE +G +V ++ G+A GQF Y
Sbjct: 293 --LTEPLDMEHITFKIRHTPEYHPA-TIEKTAEG---CYIVHAAQPIHGVAPGQFCVVYD 346
Query: 193 -QGRRCLGSGVI 203
Q RC+GS I
Sbjct: 347 EQHHRCIGSAEI 358
>gi|329121788|ref|ZP_08250404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dialister micraerophilus DSM 19965]
gi|327468061|gb|EGF13549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dialister micraerophilus DSM 19965]
Length = 352
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 99/243 (40%), Gaps = 54/243 (22%)
Query: 10 DYVASGHYANVVHSSADHK-------DKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
DY A+GHY+ +V S K D P KDQ+Y + HL+Q QL R+IF L
Sbjct: 113 DYFATGHYSRIVFDSERQKYEVRKAVDLP--KDQSYMMYHLTQEQLSRIIFPLGRICKKD 170
Query: 56 ------------------------------VLYPRLTIPM---EGIILEAETGDFLEKHR 82
V + + P EG I+ + G L KH
Sbjct: 171 TRRISKEKGLPTYNKAESQDICFLTSEQSYVDFLKEEAPEAFNEGFIVNKK-GKILGKHH 229
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
G YTIGQ + LG+ +YVV D +NN + V N F R A L G
Sbjct: 230 GIPNYTIGQRKGLGIYAKTPQYVVSIDAKNNKIIVGENEDLF---RTKLLAKDLAFTDGK 286
Query: 143 PP-EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
PP ++ + V Y + H + + A V + + + +GQ FY+G R +G G
Sbjct: 287 PPAQEFTAEGKVRYGMKVHKCHVKLQDDGRATVTFDQPQRAITSGQSVVFYEGDRLIGGG 346
Query: 202 VIL 204
I+
Sbjct: 347 TII 349
>gi|300811318|ref|ZP_07091815.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497682|gb|EFK32707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 375
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 98/250 (39%), Gaps = 47/250 (18%)
Query: 7 MEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA + + H +P KDQTYFLS L+Q Q++R++F L + P
Sbjct: 119 LDADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPE 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P +G + G + +H G +
Sbjct: 179 VRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPDGKVVGQHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD+E N + V + Y S A + +G
Sbjct: 239 YTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMTFFTGN 298
Query: 143 PPEKISQLHSV---FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P E + + C + + A V E + + GQ Y G CLG
Sbjct: 299 PEEDTEFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLYNGEECLG 358
Query: 200 SGVILEAWDD 209
G I A+ D
Sbjct: 359 GGNIDAAFKD 368
>gi|260102614|ref|ZP_05752851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus helveticus DSM 20075]
gi|417006960|ref|ZP_11945232.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus MTCC
5463]
gi|260083568|gb|EEW67688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus helveticus DSM 20075]
gi|328468659|gb|EGF39653.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus MTCC
5463]
Length = 375
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 105/260 (40%), Gaps = 59/260 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DY+A GHYA V + + K KDQTYFLS L+Q Q++++IF L
Sbjct: 113 LDFAMDLDADYIAMGHYAKTVKDADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLA 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
+ P++ +P + + G + +
Sbjct: 173 NLTKPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ Q LGL +VV KD++ N + V + Y S A +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDM 292
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEH--CEDG-------GEDIAVVQLSEDDQGLAAGQ 187
+G P H V ++CS + C+ G ++ A V E + + GQ
Sbjct: 293 SFFTGKPD------HDVEFHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQ 346
Query: 188 FAAFYQGRRCLGSGVILEAW 207
YQG CLG G I A+
Sbjct: 347 ALVLYQGEECLGGGNIDAAY 366
>gi|397482424|ref|XP_003812426.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Pan
paniscus]
gi|410209630|gb|JAA02034.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Pan
troglodytes]
gi|410248334|gb|JAA12134.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Pan
troglodytes]
gi|410291432|gb|JAA24316.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Pan
troglodytes]
gi|410329927|gb|JAA33910.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Pan
troglodytes]
Length = 421
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 110/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H KP S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 234 LQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGNVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ VQ + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVQAV---RALATGQFAVFYKGDECLGSGKILR 385
>gi|313892248|ref|ZP_07825841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dialister microaerophilus UPII 345-E]
gi|313119386|gb|EFR42585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dialister microaerophilus UPII 345-E]
Length = 352
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 99/243 (40%), Gaps = 54/243 (22%)
Query: 10 DYVASGHYANVVHSSADHK-------DKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
DY A+GHY+ +V S K D P KDQ+Y + HL+Q QL R+IF L
Sbjct: 113 DYFATGHYSRIVFDSERQKYEVRKAVDLP--KDQSYMMYHLTQEQLSRIIFPLGRICKKD 170
Query: 56 ------------------------------VLYPRLTIPM---EGIILEAETGDFLEKHR 82
V + + P EG I+ + G L KH
Sbjct: 171 TRRISKEKGLPTYNKAESQDICFLTSEQSYVDFLKEEAPEAFNEGFIVNKK-GKILGKHH 229
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
G YTIGQ + LG+ +YVV D +NN + V N F R A L G
Sbjct: 230 GIPNYTIGQRKGLGIYAKTPQYVVSIDAKNNKIIVGENEDLF---RTKLLAKDLAFTDGK 286
Query: 143 PP-EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
PP ++ + V Y + H + + A V + + + +GQ FY+G R +G G
Sbjct: 287 PPAQEFTAEGKVRYGMKVHKCHVKLQDDGRATVTFDQPQRAITSGQSVVFYEGDRLIGGG 346
Query: 202 VIL 204
I+
Sbjct: 347 TII 349
>gi|452819754|gb|EME26807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Galdieria sulphuraria]
Length = 555
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 85/178 (47%), Gaps = 54/178 (30%)
Query: 1 MDAISSMEFDYVASGHYANV----------VHSSADHKDKPSVKDQTYFLSHLSQAQLRR 50
+D+I + +ASGHYA + + SAD + KDQTYFL+HL Q QL +
Sbjct: 345 LDSIGKT-YQKIASGHYARIQKEPSTGLFQLMVSAD-----AHKDQTYFLAHLLQRQLAK 398
Query: 51 LIF---HLVLYPRLTIPME----------------------------------GIILEAE 73
++F HL I E G ++EAE
Sbjct: 399 VVFPIGHLTKEQVRAIARELNLATQSRKDSQGICFLGQIKFDDFLRHHLGTRPGKLVEAE 458
Query: 74 TGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
TG + +H G+WFYT GQ + L L + YV+ KD+E+N VFVSRNY S +K+R+ F
Sbjct: 459 TGQVVGEHCGYWFYTPGQRKGLRLPNGPW-YVLTKDVESNTVFVSRNYDSPEKQRNCF 515
>gi|161507327|ref|YP_001577281.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus DPC
4571]
gi|403515281|ref|YP_006656101.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus R0052]
gi|205816860|sp|A8YUQ2.1|MNMA_LACH4 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|160348316|gb|ABX26990.1| tRNA-methyltransferase [Lactobacillus helveticus DPC 4571]
gi|403080719|gb|AFR22297.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus R0052]
Length = 375
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 105/260 (40%), Gaps = 59/260 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DY+A GHYA V + + K KDQTYFLS L+Q Q++++IF L
Sbjct: 113 LDFAMDLDADYIAMGHYAKTVKDADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLA 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
+ P++ +P + + G + +
Sbjct: 173 NLTKPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ Q LGL +VV KD++ N + V + Y S A +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDM 292
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEH--CEDG-------GEDIAVVQLSEDDQGLAAGQ 187
+G P H V ++CS + C+ G ++ A V E + + GQ
Sbjct: 293 SFFTGKPD------HDVEFHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQ 346
Query: 188 FAAFYQGRRCLGSGVILEAW 207
YQG CLG G I A+
Sbjct: 347 ALVLYQGEECLGGGNIDAAY 366
>gi|386859916|ref|YP_006272622.1| tRNA-specific 2-thiouridylase mnmA [Borrelia crocidurae str.
Achema]
gi|384934797|gb|AFI31470.1| tRNA-specific 2-thiouridylase mnmA [Borrelia crocidurae str.
Achema]
Length = 354
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 44/240 (18%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D + +GHYA + + + + + K +KDQ+YFLSHLS+ Q+ +L F L
Sbjct: 116 KYDLIVTGHYAKIENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSEIR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P ++G I+E ETG L H G+WF+
Sbjct: 176 EIAHDIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + + L + + +V +KD++NNI+++S N + + F ++ P K
Sbjct: 236 TIGQRKGIKLSHGPW-FVTDKDVQNNIIYISNNINYLKQGKEQFLIHKTNWIN--KPLKN 292
Query: 148 SQLHSVFYNCSLTIE-HCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206
L + + I+ E ++I V L E D G++ GQF FY+ CLG IL+
Sbjct: 293 DNLSAKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYKEDECLGGAKILKT 352
>gi|31542641|ref|NP_060476.2| mitochondrial tRNA-specific 2-thiouridylase 1 [Homo sapiens]
gi|8134740|sp|O75648.2|MTU1_HUMAN RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;
AltName: Full=MTO2 homolog
gi|17149283|gb|AAL35970.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Homo
sapiens]
gi|17432490|gb|AAL38183.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Homo
sapiens]
gi|54633233|dbj|BAD66875.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Homo sapiens]
gi|119593828|gb|EAW73422.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
CRA_a [Homo sapiens]
gi|158254860|dbj|BAF83401.1| unnamed protein product [Homo sapiens]
Length = 421
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 110/277 (39%), Gaps = 81/277 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H KP S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 234 LQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+ VQ + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 384
>gi|333383101|ref|ZP_08474763.1| tRNA-specific 2-thiouridylase mnmA [Dysgonomonas gadei ATCC
BAA-286]
gi|332827933|gb|EGK00655.1| tRNA-specific 2-thiouridylase mnmA [Dysgonomonas gadei ATCC
BAA-286]
Length = 358
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 48/242 (19%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
EFD +A+GHYA + K VKDQTYFL + Q+ +L+F +
Sbjct: 114 EFDKIATGHYATTTELNGKTWLSTAKDHVKDQTYFLGQIDYLQVSKLMFPIGDLLKSEVR 173
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG+ L KH G+WF+
Sbjct: 174 AIAAQQGLPSAQRKDSQGICFLGKVNYNDFIRRYLGERKGKIVELETGNVLGKHDGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS----GLP 143
TIGQ + L L + +V++KD + N+V+VS Y + + + ++ G
Sbjct: 234 TIGQRRGLKLSGGPW-FVIKKDTKRNVVYVSNGYDPETQYGKVVNLAGFSFITEDIWGDF 292
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG--RRCLGSG 201
+ + + T + E G D+ + E QG+AAGQF Y + C+GSG
Sbjct: 293 EGRKDITFKIRHTPEFTHGYIEKIG-DLYRIHSDEKIQGIAAGQFGVVYDADSKLCIGSG 351
Query: 202 VI 203
+I
Sbjct: 352 MI 353
>gi|227514810|ref|ZP_03944859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus fermentum ATCC 14931]
gi|260663608|ref|ZP_05864497.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN]
gi|227086800|gb|EEI22112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus fermentum ATCC 14931]
gi|260551834|gb|EEX24949.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN]
Length = 377
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 108/258 (41%), Gaps = 65/258 (25%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPM 65
DYVA+GHYA++ A + + K KDQTYFLS L AQL +++F L Y + +
Sbjct: 122 DYVATGHYADLKRDEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVRQ 181
Query: 66 ---------------EGIILEAETGDFLE----------------------KHRGFWFYT 88
GI E G F E H G +YT
Sbjct: 182 LAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLPAQQGEMQTVDGKVVGTHAGLMYYT 241
Query: 89 IGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF----HAGSLKLLS 140
IGQ + LGL +V+ KDI N+++V + Y + HL+ A + +
Sbjct: 242 IGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGY----ENEHLYATHMEASDIHWVD 297
Query: 141 GLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDD--QGLAAGQFAAFY 192
+ ++ H + +T++ +DG +V ++ DD + + GQ FY
Sbjct: 298 DVVSRYGTEFHCTAKFRYRQKDEGVTVKLSDDG----QMVTVTSDDPARAITPGQAVVFY 353
Query: 193 QGRRCLGSGVILEAWDDQ 210
G CLGS +I A++ +
Sbjct: 354 DGDECLGSAIIDRAYNQE 371
>gi|404486571|ref|ZP_11021761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Barnesiella intestinihominis YIT 11860]
gi|404336389|gb|EJZ62850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Barnesiella intestinihominis YIT 11860]
Length = 353
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 60/247 (24%)
Query: 9 FDYVASGHYANVVHSS-----ADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL-------- 55
FD A+GHYA + + +DK KDQT FL+ + Q+ L+F +
Sbjct: 113 FDKTATGHYATTTERNGKIYLSTARDKK--KDQTDFLAQIDSVQVSHLLFPIGDLLKQEV 170
Query: 56 -----------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFWF 86
R +G I+E ETG L H+G+WF
Sbjct: 171 REMAVSAKLPNASRRDSQGICFLGNIDYNAFIRRHLGERQGAIVELETGKILGFHKGYWF 230
Query: 87 YTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP--- 143
+TIGQ + LGL + YVV KD++ N +FVS Y + + + ++ P
Sbjct: 231 HTIGQRKGLGLSGGPW-YVVAKDVDTNTIFVSNGYGTEKQYGKVLKLAEFHFITDDPWGE 289
Query: 144 ---PEKIS--QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR-- 196
P +I+ H+ + L I+ G+ ++ E QG+A GQFA Y R
Sbjct: 290 MESPVEITFKNRHTPDFTSGLLIKE----GKSYSISS-KEPVQGIAPGQFAVVYDKERHI 344
Query: 197 CLGSGVI 203
C+GSGVI
Sbjct: 345 CVGSGVI 351
>gi|300726991|ref|ZP_07060411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bryantii B14]
gi|299775714|gb|EFI72304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bryantii B14]
Length = 361
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 107/243 (44%), Gaps = 52/243 (21%)
Query: 8 EFDYVASGHYAN--VVHSSADHKDKPS-VKDQTYFLSHLSQAQLRRLIF----------- 53
++D +A+GHYA ++ P VKDQT FL+ + Q QL++ IF
Sbjct: 122 DYDLIATGHYAQTEIIDGKKWLVTSPDPVKDQTDFLAQIYQWQLKKAIFPIGHHIKDEIR 181
Query: 54 ------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
HL+ R +G ++E ETG + +H+G WF+
Sbjct: 182 EIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEKKGNVIEFETGKKIGEHKGLWFH 241
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDIE NI++VS Y + F L+ E I
Sbjct: 242 TIGQRKGLGLGGGPW-FVVKKDIEKNILYVSHGYDPETAYKQDFKIHDFDFLT----EGI 296
Query: 148 SQLHS-VFYNCSLTIEH----CEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
++L + V + T E+ E G+ + E G+A GQF Y Q RC GS
Sbjct: 297 TELPARVTFKIRHTPEYHPASVEVNGDGTFTIHSDEKIHGVAPGQFCVIYDEQHHRCYGS 356
Query: 201 GVI 203
G I
Sbjct: 357 GEI 359
>gi|21312518|ref|NP_082339.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Mus musculus]
gi|14195274|sp|Q9DAT5.1|MTU1_MOUSE RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
gi|12838169|dbj|BAB24110.1| unnamed protein product [Mus musculus]
gi|26335739|dbj|BAC31570.1| unnamed protein product [Mus musculus]
gi|26336146|dbj|BAC31758.1| unnamed protein product [Mus musculus]
gi|33867793|gb|AAQ55218.1| 5'methylaminomethyl-2-thiouridylate-methyltransferase [Mus
musculus]
gi|38512243|gb|AAH61026.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mus
musculus]
gi|148672470|gb|EDL04417.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mus
musculus]
Length = 417
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 110/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H KP S KDQ
Sbjct: 114 AVDNLGADAVATGHYARTSLEDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL R ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGELTKDFVKKIAAENSLHHVLQKRESMGICFIGKRNLEHFL 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++ L + YVVEKD V V+
Sbjct: 234 LQYLQPRPGKFVSIEDNTVLGTHKGWFLYTLGQRAKISGLREPW-YVVEKDGTKGDVLVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ +GLA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVKAV---RGLALGQFAVFYKGEECLGSGKILR 385
>gi|257458053|ref|ZP_05623212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Treponema vincentii ATCC 35580]
gi|257444766|gb|EEV19850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Treponema vincentii ATCC 35580]
Length = 358
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 104/240 (43%), Gaps = 53/240 (22%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYP--RL 61
D VA+GHYA V S+ + + KDQ+YFL+ LSQ QL R +F L + P RL
Sbjct: 116 DAVATGHYAKVFQESSGRYVLERGVDAQKDQSYFLALLSQEQLSRTLFPLAELTKPEVRL 175
Query: 62 TIPMEGII---------------------LEA------ETGDFLE-------KHRGFWFY 87
G++ +EA GDF++ HRG Y
Sbjct: 176 IAEKAGLVNAHKSDSQDICFVPDGDYTAVIEAFAPDAFPQGDFIDMNGIKVGTHRGLHRY 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS----LKLLSGLP 143
TIGQ + L L + YVVEK E+N V V+ + LF A + ++ +P
Sbjct: 236 TIGQRRGLALPFGYPIYVVEKSAEHNTVTVA-------PENGLFAAACFVRDVNWIAEIP 288
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
E Y L E G++ + +E ++ +A GQ A FY+G R LG G+I
Sbjct: 289 NEPFYAEVKTRYRQQLKKARIEPIGDNRVRIVFTEPERAVARGQAAVFYRGSRVLGGGII 348
>gi|184155064|ref|YP_001843404.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus fermentum IFO
3956]
gi|229486413|sp|B2GB92.1|MNMA_LACF3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|183226408|dbj|BAG26924.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Lactobacillus fermentum IFO 3956]
Length = 377
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 67/259 (25%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPM 65
DYVA+GHYA++ A + + K KDQTYFLS L AQL +++F L Y + +
Sbjct: 122 DYVATGHYADLKRDEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVRQ 181
Query: 66 ---------------EGIILEAETGDFLE----------------------KHRGFWFYT 88
GI E G F E H G +YT
Sbjct: 182 LAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLPAQQGEMQTVDGKVVGTHAGLMYYT 241
Query: 89 IGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
IGQ + LGL +V+ KDI N+++V + Y + HL+ A ++
Sbjct: 242 IGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGY----ENEHLY-ATHMEASDIHWV 296
Query: 145 EKISQLHSVFYNCS-----------LTIEHCEDGGEDIAVVQLSEDD--QGLAAGQFAAF 191
+ + + + ++C+ +T++ +DG +V ++ DD + + GQ F
Sbjct: 297 DDVVSRYGMEFHCTAKFRYRQKDEGVTVKLSDDG----QMVTVTSDDPARAITPGQAVVF 352
Query: 192 YQGRRCLGSGVILEAWDDQ 210
Y G CLGS +I A++ +
Sbjct: 353 YDGDECLGSAIIDRAYNQE 371
>gi|218289827|ref|ZP_03494027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alicyclobacillus acidocaldarius LAA1]
gi|218240118|gb|EED07303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alicyclobacillus acidocaldarius LAA1]
Length = 365
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 101/240 (42%), Gaps = 46/240 (19%)
Query: 10 DYVASGHYANVVH----SSADHKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV------ 56
DY+A+GHYA V S A + + KDQTYFL L+QA LRR +F HL
Sbjct: 118 DYLATGHYAQVRQLEDGSVALVRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEVRQ 177
Query: 57 ---------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+ + +P + ++E G L +H G +YTI
Sbjct: 178 IARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLPAQPGLIEDVDGRVLGEHDGLMYYTI 237
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
GQ + L L + R +VV+KD+ N++ V++ + A ++ ++ PP
Sbjct: 238 GQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALSADTVSFVAERPP 297
Query: 145 EKISQLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ + + F Y E GED V E + + GQ FY G CLG G+I
Sbjct: 298 AERFRCTAKFRYRQDDQPVKVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGDICLGGGII 357
>gi|339008614|ref|ZP_08641187.1| tRNA-specific 2-thiouridylase MnmA [Brevibacillus laterosporus LMG
15441]
gi|338774414|gb|EGP33944.1| tRNA-specific 2-thiouridylase MnmA [Brevibacillus laterosporus LMG
15441]
Length = 376
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 52/257 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
++ + + DYVA+GHYA V ++K V KDQTYFL+ L Q QL + +F +
Sbjct: 113 LNKVMDLGADYVATGHYARVELRDGEYKLLRGVDENKDQTYFLNQLGQNQLAKTLFPIGH 172
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
P+ + P +E G+ + H
Sbjct: 173 LPKKQVREIADRAGLATAKKKDSTGICFIGERNFREFLQNYLPARPGKIETTDGEVIGNH 232
Query: 82 RGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSR-NYYSFDKKRHLFHAGSL 136
G +YT+GQ Q LG+ +VV+KD+E N++ V + + + + HL A +
Sbjct: 233 DGLMYYTLGQRQGLGIGGGAGEGLPWFVVDKDLERNVLIVGQGSNHPWLYSSHLI-AEQV 291
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
K +S P E++ + F + +T+ E +D V+ +E + + GQ FY
Sbjct: 292 KWVSDEPKEEVFTCMAKFRYRQPDQQVTVRRIE---KDTYKVEFAEPQKAVTPGQAVVFY 348
Query: 193 QGRRCLGSGVILEAWDD 209
QG CLG G I + + D
Sbjct: 349 QGEECLGGGTIDKVYID 365
>gi|389815871|ref|ZP_10207119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Planococcus antarcticus DSM 14505]
gi|388465594|gb|EIM07910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Planococcus antarcticus DSM 14505]
Length = 372
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 102/239 (42%), Gaps = 41/239 (17%)
Query: 6 SMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF---HLVLY 58
S+ DY+A+GHYA V H+ + K + KDQTYFL+ L Q+QL +++F H+
Sbjct: 120 SLGADYLATGHYAQVEHAENGETKMLRGKDNNKDQTYFLNQLDQSQLSKVMFPIGHMEKK 179
Query: 59 PRLTIPME--------------------------GIILEAETGDF-------LEKHRGFW 85
I +E G L A+ G + H G
Sbjct: 180 KVREIALEAGLATATKKDSTGICFIGERNFKEFLGQYLPAQPGGMETLEGVKMGSHDGLM 239
Query: 86 FYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
+YTIGQ Q LG+ +V+ KD++ N+++V +N + A +L S P
Sbjct: 240 YYTIGQRQGLGIGGAGDPWFVIGKDLKKNVLYVGQNIHHDALFSDSLTAVNLSFTSNTAP 299
Query: 145 EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
I + + F + + ++ AVV +E + + GQ FY G CLG G I
Sbjct: 300 TGILECTAKFRYRQQDVGVSVEFKDERAVVTFTEPVRAITPGQAVVFYDGEECLGGGTI 358
>gi|417400579|gb|JAA47220.1| Putative mitochondrial trna-specific 2-thiouridylase 1 [Desmodus
rotundus]
Length = 417
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 111/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S+KDQ
Sbjct: 114 ALGNLGADAVATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVQLLQAADSLKDQ 173
Query: 37 TYFLSHLSQAQLRRLIFHL-------------------VLYPRLTI-------------- 63
T+FLS +SQ LRR +F L VL + ++
Sbjct: 174 TFFLSQVSQEALRRTLFPLGGLTKDFVKKIAAENGLQHVLQKKESMGVCFIGKRNFENFI 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P+ G + E G L H+G++ +T+GQ +G L + YVVEKD VFV+
Sbjct: 234 LQYLQPLPGKFVSIEDGRVLGTHKGWFLFTLGQRANIGGLREPW-YVVEKDGAKGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLH------SVFYNCSLTIEHCEDG 167
R L + ++ PP +K+ + H C LT+ +DG
Sbjct: 293 PRMDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRYRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ VQ + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVQAV---RALALGQFAVFYRGGECLGSGKILR 385
>gi|385812134|ref|YP_005848525.1| tRNA methyl transferase [Lactobacillus fermentum CECT 5716]
gi|299783033|gb|ADJ41031.1| tRNA methyl transferase [Lactobacillus fermentum CECT 5716]
Length = 377
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 65/258 (25%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPM 65
DYVA+GHYA++ A + + K KDQTYFLS L AQL +++F L Y + +
Sbjct: 122 DYVATGHYADLKRDEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVRQ 181
Query: 66 ---------------EGIILEAETGDFLE----------------------KHRGFWFYT 88
GI E G F E H G +YT
Sbjct: 182 LAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLPAQQGEMQTVDGKVVGTHAGLMYYT 241
Query: 89 IGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF----HAGSLKLLS 140
IGQ + LGL +V+ KDI N+++V + Y + HL+ A + +
Sbjct: 242 IGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGY----ENEHLYATHMEASDIHWVD 297
Query: 141 GLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDD--QGLAAGQFAAFY 192
+ + H + +T++ +DG +V ++ DD + + GQ FY
Sbjct: 298 DVVSRYGXEFHCTAKFRYRQKDEGVTVKLSDDG----QMVTVTSDDPARAITPGQAVVFY 353
Query: 193 QGRRCLGSGVILEAWDDQ 210
G CLGS +I A++ +
Sbjct: 354 DGDECLGSAIIDRAYNQE 371
>gi|422845437|ref|ZP_16892147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. lactis DSM 20072]
gi|325684365|gb|EGD26534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. lactis DSM 20072]
Length = 375
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 97/250 (38%), Gaps = 47/250 (18%)
Query: 7 MEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA + + H +P KDQTYFLS L+Q Q++R++F L + P
Sbjct: 119 LDADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPE 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P +G + G + H G +
Sbjct: 179 VRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPDGKVVGHHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD+E N + V + Y S A + +G
Sbjct: 239 YTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMTFFTGN 298
Query: 143 PPEKISQLHSV---FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P E + + C + + A V E + + GQ Y G CLG
Sbjct: 299 PEEDTEFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLYNGEECLG 358
Query: 200 SGVILEAWDD 209
G I A+ D
Sbjct: 359 GGNIDAAFKD 368
>gi|104773839|ref|YP_618819.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|418035967|ref|ZP_12674405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|123077302|sp|Q1GAS1.1|MNMA_LACDA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|103422920|emb|CAI97582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
gi|354689126|gb|EHE89138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
Length = 375
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 97/250 (38%), Gaps = 47/250 (18%)
Query: 7 MEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA + + H +P KDQTYFLS L+Q Q++R++F L + P
Sbjct: 119 LDADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPE 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P +G + G + H G +
Sbjct: 179 VRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPDGKVVGHHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD+E N + V + Y S A + +G
Sbjct: 239 YTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMTFFTGN 298
Query: 143 PPEKISQLHSV---FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P E + + C + + A V E + + GQ Y G CLG
Sbjct: 299 PEEDTEFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLYNGEECLG 358
Query: 200 SGVILEAWDD 209
G I A+ D
Sbjct: 359 GGNIDAAFKD 368
>gi|229918430|ref|YP_002887076.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sp. AT1b]
gi|229469859|gb|ACQ71631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Exiguobacterium sp. AT1b]
Length = 373
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 99/241 (41%), Gaps = 46/241 (19%)
Query: 10 DYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIF---HLVLYPRLTI 63
D+VA+GHYA V + +H+ K KDQTYFL+ LSQ QL R +F H+ I
Sbjct: 126 DFVATGHYAQVKYVDGEHRLLRGKDDNKDQTYFLNQLSQDQLARTMFPIGHMDKKDVRAI 185
Query: 64 PMEGIILEAETGD--------------FLE-------------------KHRGFWFYTIG 90
E + A+ D FL +H G +YT+G
Sbjct: 186 AEEAGLATAKKKDSTGICFIGERNFKEFLSEYLPSQPGEMRTLDGVVKGRHDGLMYYTLG 245
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ +VV KD+ENN++FV + ++ A L P +
Sbjct: 246 QRHGLGIGGDGDPWFVVGKDVENNVLFVGQGFHHDALYSDALLASKLSWTGAAPTGEFRA 305
Query: 150 LHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206
Y + +T+ E+G +V+ E + + GQ FY G CLG I EA
Sbjct: 306 TAKFRYRQQDVPVTVAPLENGE---VLVKFDEPQRAITPGQAVVFYDGDVCLGGATIDEA 362
Query: 207 W 207
+
Sbjct: 363 Y 363
>gi|355726284|gb|AES08821.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mustela
putorius furo]
Length = 418
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 111/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAVATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR +F H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNFENFI 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++G L + YVVEKD VFV+
Sbjct: 234 LQYLQPRPGKFISIEDNKVLGTHKGWFLYTLGQRAKMGGLREPW-YVVEKDSATGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVRAV---RALAPGQFAVFYKGEECLGSGKILR 385
>gi|385814070|ref|YP_005850463.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus helveticus H10]
gi|323466789|gb|ADX70476.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus helveticus H10]
Length = 375
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 105/260 (40%), Gaps = 59/260 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DY+A GHYA V + + K KDQTYFL+ L+Q Q++++IF L
Sbjct: 113 LDFAMDLDADYIAMGHYAKTVKDADGLTHMMRPKDGNKDQTYFLNQLNQDQIKKVIFPLA 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
+ P++ +P + + G + +
Sbjct: 173 NLTKPQVREIALANGLAIAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ Q LGL +VV KD++ N + V + Y S A +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDM 292
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEH--CEDG-------GEDIAVVQLSEDDQGLAAGQ 187
+G P H V ++CS + C+ G ++ A V E + + GQ
Sbjct: 293 SFFTGKPD------HDVEFHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQ 346
Query: 188 FAAFYQGRRCLGSGVILEAW 207
YQG CLG G I A+
Sbjct: 347 ALVLYQGEECLGGGNIDAAY 366
>gi|288928497|ref|ZP_06422344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 317 str. F0108]
gi|288331331|gb|EFC69915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 317 str. F0108]
Length = 353
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 104/252 (41%), Gaps = 66/252 (26%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
E+D +A+GHYA + +S D VKDQT FL+ + QLR+ +F + Y
Sbjct: 116 EYDLIATGHYAQTEWIDGKKWLVTSPD-----PVKDQTDFLAQIYDWQLRKALFPIGHYQ 170
Query: 60 -------------------------------------RLTIPMEGIILEAETGDFLEKHR 82
R G +LE ET + HR
Sbjct: 171 KGEVREIAEREHLINAKRKDSQGICFLGKINYNEYIRRFLGEKPGEVLELETEKKIGMHR 230
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLK 137
G WF+TIGQ LG + Y V+KD+E N++FVS+ Y Y D K H H +
Sbjct: 231 GLWFHTIGQRHGLGFGGGPW-YAVKKDVERNVLFVSKGYEPATAYKKDFKVHHLHQLTAP 289
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGR 195
L KI H+ Y+ +E DGG +V E QG+A GQF Y +
Sbjct: 290 LDGLDVTFKIR--HTPEYH-RAQLEPLPDGG---YIVHAEEPMQGVAPGQFCVIYDKEHH 343
Query: 196 RCLGSGVILEAW 207
RC GS I AW
Sbjct: 344 RCFGSAEI--AW 353
>gi|229495661|ref|ZP_04389390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas endodontalis ATCC 35406]
gi|229317431|gb|EEN83335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas endodontalis ATCC 35406]
Length = 383
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 108/256 (42%), Gaps = 64/256 (25%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPM 65
+DY+A+GHYA+ VKDQT FL+ ++ Q+ +L+F L + + M
Sbjct: 133 YDYIATGHYASTARVDGKTFLATAPDPVKDQTDFLAQINFKQISKLLFPLGCLTKQQVRM 192
Query: 66 -------------------------------------EGIILEAETGDFLEKHRGFWFYT 88
G I+E ETG L H+GFWF+T
Sbjct: 193 VAEEAGLANAHRKDSQGICFLGKINYNDFIERYLGKRPGRIIEYETGKTLGTHQGFWFHT 252
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY--------------YSFDKKRHLFHAG 134
IGQ + LGL + +VV+KD + NI+ VSR Y + F + G
Sbjct: 253 IGQRKGLGLSGGPW-FVVKKDCKRNIILVSRGYDPLTQYGTEIFVDKFDFITEDLFAPEG 311
Query: 135 SLKLLSG--LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ G + P + H+ + TI E G ++ + QG+A GQ+A Y
Sbjct: 312 AVGNKEGAQVVPITLKIRHTPEF-VRATIRRLERGYHIVSETPI----QGIAPGQYAVIY 366
Query: 193 --QGRRCLGSGVILEA 206
+ R C GSG+I++
Sbjct: 367 DPESRLCFGSGMIVKG 382
>gi|395242922|ref|ZP_10419910.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus hominis CRBIP
24.179]
gi|394484742|emb|CCI80918.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus hominis CRBIP
24.179]
Length = 375
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 105/261 (40%), Gaps = 57/261 (21%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A GHYA VVH + K KDQTYFLS LSQ QL+++IF
Sbjct: 113 LDFAMDLDADYIAMGHYAKTRVDENGVVHM---MRPKDGNKDQTYFLSQLSQDQLKKVIF 169
Query: 54 HL--VLYPRLT----------------------------------IPMEGIILEAETGDF 77
L + P++ +P +G + G
Sbjct: 170 PLANLTKPQVREIAKSAGLATAKKKDSTGICFIGERNFKKFLSEFLPAQGGEMVTPDGKV 229
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ H G +YTIGQ LGL +VV KD++ N + V + Y S
Sbjct: 230 VGHHAGLMYYTIGQRSGLGLGSTKESTAPWFVVGKDLKTNKLIVEQGYDSDLLYSDSLDG 289
Query: 134 GSLKLLSGLPPEKISQLHSVFY-----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
+ +G+P + + + +T+ + +D + V+ E + + GQ
Sbjct: 290 SEVSFFTGMPDHDFDLKCTAKFRYRQPDVGITLHYKKD--TNTVHVEFDEPARAVTPGQE 347
Query: 189 AAFYQGRRCLGSGVILEAWDD 209
FYQG CLGS I A+ D
Sbjct: 348 IVFYQGEECLGSATIDRAYKD 368
>gi|224026934|ref|ZP_03645300.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM
18228]
gi|224020170|gb|EEF78168.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM
18228]
Length = 385
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 101/248 (40%), Gaps = 63/248 (25%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL---------- 55
+D +A+GHYA+ K VKDQT FL+ + Q+ RL+F L
Sbjct: 143 YDRIATGHYASTCEREGKVWLATAKDPVKDQTDFLAQIDYLQVSRLLFPLGGLMKQEVRE 202
Query: 56 -VLYPRLTIPME--------------------------GIILEAETGDFLEKHRGFWFYT 88
L RL G I+E E+G + H+GFWF+T
Sbjct: 203 TALAARLPSARRKDSQGICFLGKINYNDFIRRFLGERPGAIVELESGREIGTHKGFWFHT 262
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP-PEKI 147
IGQ + LGL + +VV+KD E N++FVSR Y + + F ++ P PE
Sbjct: 263 IGQRKGLGLSGGPW-FVVDKDPEKNLLFVSRGYDTVHQYGRKFRLTDFHFITENPWPEAG 321
Query: 148 SQLHSVFYNCSLTIEHCED----------GGEDIAVVQLSEDDQGLAAGQFAAFY--QGR 195
Q I H + G ++ L QG+A GQF Y + R
Sbjct: 322 EQ------EICFKIRHTDQFLPGVIRPAGTGYEVESPHLI---QGIAPGQFGVIYDREAR 372
Query: 196 RCLGSGVI 203
C+GSG I
Sbjct: 373 LCIGSGEI 380
>gi|389748526|gb|EIM89703.1| tRNA methyltransferase [Stereum hirsutum FP-91666 SS1]
Length = 368
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 98/247 (39%), Gaps = 56/247 (22%)
Query: 11 YVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
++A+GHYA H H+ + KDQT++LS + + L + IF
Sbjct: 115 FLATGHYARKSHHPTTHRPHLLRSRDRTKDQTFYLSSIGEPSLAKSIFPLQDLLKSEVRE 174
Query: 54 -----HLVLYPR---------------------LTIPMEGIILEAETGDFLEKHRGFWFY 87
LV R P G I++ TG+ L +H+G W Y
Sbjct: 175 IASRAELVTAKRDESMGLCFVGEKRKFNDFLASYIPPKPGPIMDLSTGEILGEHQGLWTY 234
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRN-----YYSFDKKRHLFHAGSLKLLSGL 142
TIGQ +L + +V KD E N ++V + + S + RH ++L G+
Sbjct: 235 TIGQGAKLAGMS-KKTFVCRKDKERNAIYVVQGGNENLWVSKIRSRHWSWISPDEVLPGV 293
Query: 143 PPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
+ +Q + ++ DGG + E + +A GQ A + G RCL
Sbjct: 294 DTRRGLRARTQFRHRMTDVGCSVTRSNDGG---ITITFDEPQKAVATGQTAVLWDGDRCL 350
Query: 199 GSGVILE 205
G G I++
Sbjct: 351 GCGNIVD 357
>gi|357042747|ref|ZP_09104450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella histicola F0411]
gi|355369126|gb|EHG16528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella histicola F0411]
Length = 360
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 111/251 (44%), Gaps = 70/251 (27%)
Query: 9 FDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60
+D +A+GHYA + +S D VKDQT FL+ + QL++ IF + Y +
Sbjct: 122 YDLIATGHYAQTEWINGRKWLTTSPD-----PVKDQTDFLAQIYDWQLKKAIFPIGHYEK 176
Query: 61 LTI-------------------------------------PMEGIILEAETGDFLEKHRG 83
+ G ++E ETG + +H+G
Sbjct: 177 NEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQVGDVIELETGKKIGEHKG 236
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKL 138
WF+TIGQ + LGL + +V++KD+ NI++VS Y Y D H FH L
Sbjct: 237 LWFHTIGQRKGLGLGGGPW-FVIKKDVTQNILYVSHGYDPETAYKKDFPLHDFHF----L 291
Query: 139 LSGLP--PEKIS--QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY-- 192
G+ PEKI+ H+ Y+ + T+E DG ++ +E G+A GQF Y
Sbjct: 292 TEGVTDLPEKITFKIRHTPEYHPA-TVEQLSDGK---CLIHSAESIHGVAPGQFCVVYDE 347
Query: 193 QGRRCLGSGVI 203
Q +C GSG I
Sbjct: 348 QHHKCYGSGEI 358
>gi|51246807|ref|YP_066691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Desulfotalea psychrophila LSv54]
gi|81641104|sp|Q6AIZ6.1|MNMA_DESPS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|50877844|emb|CAG37684.1| probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Desulfotalea psychrophila LSv54]
Length = 344
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 107/251 (42%), Gaps = 59/251 (23%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL---- 55
AI + +A+GHYA + ++A HK KDQ+YFLS LSQ QL IF L
Sbjct: 104 AILRQGVERIATGHYAQIHKTAAGYQLHKGVDPHKDQSYFLSRLSQEQLAHSIFPLGGMH 163
Query: 56 --VLYP----------RLTIPMEGIILEAE-TGDFLE---------------------KH 81
+Y R T + LE + DFLE KH
Sbjct: 164 KGAIYDLVEAHGFHDFRGTESQDVCFLEQDNVVDFLEQTAEFSASSGNIVMNDGKILGKH 223
Query: 82 RGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
+G YT+GQ + LG+ Y V YV+ D++NN V V N F K + + +S
Sbjct: 224 KGLHRYTVGQRRGLGISYPVPLYVINLDVKNNNVIVGENEQLFHKTMAI---SDIHWIS- 279
Query: 142 LPPEKISQLHSVFYNCSLTIEHCEDGGE--------DIAVVQLSEDDQGLAAGQFAAFYQ 193
PE+ LH+ S+ I G + + A V E + + GQFA Y+
Sbjct: 280 -QPEREDLLHA-----SVHIRSTHKGAQASVILKENNRASVIFDEPQRAITPGQFATIYK 333
Query: 194 GRRCLGSGVIL 204
+ LGSGVIL
Sbjct: 334 DTQVLGSGVIL 344
>gi|421872199|ref|ZP_16303818.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brevibacillus laterosporus GI-9]
gi|372458811|emb|CCF13367.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brevibacillus laterosporus GI-9]
Length = 376
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 52/257 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
++ + + DYVA+GHYA V +++ V KDQTYFL+ L Q QL + +F +
Sbjct: 113 LNKVMDLGADYVATGHYARVELRDGEYRLLRGVDENKDQTYFLNQLGQKQLAKTLFPIGH 172
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
P+ + P +E G+ + H
Sbjct: 173 LPKKQVREIADRAGLATAKKKDSTGICFIGERNFREFLQNYLPARPGKIETTDGEVIGNH 232
Query: 82 RGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSR-NYYSFDKKRHLFHAGSL 136
G +YT+GQ Q LG+ +VV+KD+E N++ V + + + + HL A +
Sbjct: 233 DGLMYYTLGQRQGLGIGGGAGEGLPWFVVDKDLERNVLIVGQGSNHPWLYSSHLI-AEQV 291
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
K +S P E++ + F + +T+ E +D V+ +E + + GQ FY
Sbjct: 292 KWVSDEPKEEVFTCMAKFRYRQPDQQVTVRRIE---KDTYKVEFAEPQKAVTPGQAVVFY 348
Query: 193 QGRRCLGSGVILEAWDD 209
QG CLG G I + + D
Sbjct: 349 QGEECLGGGTIDKVFID 365
>gi|82703361|ref|YP_412927.1| tRNA-specific 2-thiouridylase MnmA [Nitrosospira multiformis ATCC
25196]
gi|123544047|sp|Q2Y6T6.1|MNMA_NITMU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|82411426|gb|ABB75535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosospira multiformis ATCC 25196]
Length = 363
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 107/260 (41%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV- 56
+D + + DY+A+GHYA V ++ K + KDQ+YFL L+QAQL R +F +
Sbjct: 110 LDHAAGLGADYIATGHYAQVRNTDGVFQLLKGEDGTKDQSYFLYRLNQAQLSRALFPIGH 169
Query: 57 LYPRLT-----------------------------------IPMEGIILEAETGDFLEKH 81
LY R +P + + +GD + +H
Sbjct: 170 LYKRDVRSIAKDHGLPNFSKKDSTGICFIGERPFREFLNRYLPNDPGEIRTPSGDVMGRH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +YTIGQ Q LG+ +V EKD++ N++ V + + D R A L
Sbjct: 230 AGLMYYTIGQRQGLGIGGTRGGDGEPWFVSEKDVKRNVLTVVQGHDHPDLLRPALAATDL 289
Query: 137 KLLSGLPPE-------KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+SG P KI S CS+T C ++ ++ +A GQ
Sbjct: 290 TWVSGKMPRCNWVYAAKIRYRQSD-APCSITYLDCNK-----CKIEFAQPQWAVAPGQSV 343
Query: 190 AFYQGRRCLGSGVILEAWDD 209
Y+ + CLG GVI DD
Sbjct: 344 VVYESKVCLGGGVIAATQDD 363
>gi|188586399|ref|YP_001917944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|205816905|sp|B2A5K1.1|MNMA_NATTJ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|179351086|gb|ACB85356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 368
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 61/252 (24%)
Query: 6 SMEFDYVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLY-- 58
++E DY+A+GHY+ +V+ + ++ K KDQ+Y LS L+Q QL R +F L Y
Sbjct: 123 ALECDYIATGHYSKIVYDNLKNRYLLYRGKDKTKDQSYMLSQLTQEQLARTLFPLGDYYK 182
Query: 59 ---------------------------------------PRLTIPMEGIILEAETGDFLE 79
P P G IL+A+ G+ L
Sbjct: 183 EDVRNIAEQNELGVADKPDSQEICFVPNNDYGEFLQSVVPEHINP--GPILDAQ-GNKLG 239
Query: 80 KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-KL 138
+H+G FYTIGQ + LG+ YV++ D +NN + V K L+ G + +
Sbjct: 240 EHKGIAFYTIGQRRGLGISLGRPVYVIDIDADNNALIVG-------DKEELYSDGLIAEE 292
Query: 139 LSGLPPEKISQL----HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
++ +P E+I + YN + G D +V+ ++ + + GQ FYQ
Sbjct: 293 INLIPYEQIENSIDIECKIRYNSRNVSSTLQPYGNDQLLVKFNQPVEAVTPGQGVTFYQD 352
Query: 195 RRCLGSGVILEA 206
+G G IL+A
Sbjct: 353 DLVIGGGTILKA 364
>gi|398836540|ref|ZP_10593874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Herbaspirillum sp. YR522]
gi|398211653|gb|EJM98270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Herbaspirillum sp. YR522]
Length = 368
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 103/259 (39%), Gaps = 63/259 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + D++A+GHYA V ++A H K + KDQ+YFL L+QAQL R +F L
Sbjct: 110 LDHAMKLGADFIATGHYARVRQNAAGHFELLKALDASKDQSYFLHRLNQAQLSRTVFPLG 169
Query: 56 --------VLYPRLTIP----------------------------MEGIILEAETGDFLE 79
+ L +P G I AE GD +
Sbjct: 170 ELHKTEVRRIAEELKLPNARKKDSTGICFIGERPFREFLNRYLSYQPGPIKTAE-GDTVG 228
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFDKKRH 129
+H G FYT+GQ + +G+ I YV KD++ N +++ + +
Sbjct: 229 QHVGLSFYTLGQRKGIGIGGIKAHQNAQGTSDAWYVARKDVDANTLYIVQGHDHPWLLSP 288
Query: 130 LFHAGSLKLLSGLPPEKISQLHSVFYN-----CSLTIEHCEDGGEDIAVVQLSEDDQGLA 184
AG L ++G PP + Y C+ T GGE ++ +
Sbjct: 289 SLQAGQLSWIAGQPPAAGALSAKTRYRQSDVACAFT------GGEGQFSLEFDTPQWAVT 342
Query: 185 AGQFAAFYQGRRCLGSGVI 203
GQ A Y G CLG G+I
Sbjct: 343 PGQSAVLYDGEICLGGGII 361
>gi|119593829|gb|EAW73423.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
CRA_b [Homo sapiens]
Length = 307
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 106/270 (39%), Gaps = 81/270 (30%)
Query: 10 DYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQTYFLSHL 43
D +A+GHYA + H KP S KDQT+FLS +
Sbjct: 7 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV 66
Query: 44 SQAQLRRLIF-------------------HLVLYPRLTI-------------------PM 65
SQ LRR IF H VL + ++ P
Sbjct: 67 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR 126
Query: 66 EGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFD 125
G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 127 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFVAPRTDHPA 185
Query: 126 KKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIAVV 174
R L + ++ PP +K+ + H F + C LT+ +DG + V
Sbjct: 186 LYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVTAV 243
Query: 175 QLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
Q + LA GQFA FY+G CLGSG IL
Sbjct: 244 QAV---RALATGQFAVFYKGDECLGSGKIL 270
>gi|116513846|ref|YP_812752.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|385815466|ref|YP_005851857.1| tRNA-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|418029220|ref|ZP_12667768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|122275384|sp|Q04B58.1|MNMA_LACDB RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116093161|gb|ABJ58314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|325125503|gb|ADY84833.1| Probable tRNA-methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|354690938|gb|EHE90880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 375
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 97/250 (38%), Gaps = 47/250 (18%)
Query: 7 MEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA + + H +P KDQTYFLS L+Q Q++R++F L + P
Sbjct: 119 LDADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPE 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P +G + G + H G +
Sbjct: 179 VRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPDGKVVGHHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD+E N + V + Y S A + +G
Sbjct: 239 YTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMTFFTGN 298
Query: 143 PPEKISQLHSV---FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P E + + C + + A V E + + GQ Y G CLG
Sbjct: 299 PEEDTEFKATAKFRYRQCDVGVTVKYYAASKTADVYFDEPARAVTPGQALVLYNGEECLG 358
Query: 200 SGVILEAWDD 209
G I A+ D
Sbjct: 359 GGNIDAAFKD 368
>gi|227877338|ref|ZP_03995411.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01]
gi|256842900|ref|ZP_05548388.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN]
gi|256848726|ref|ZP_05554160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
MV-1A-US]
gi|262045866|ref|ZP_06018830.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US]
gi|293381734|ref|ZP_06627715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus crispatus 214-1]
gi|312977582|ref|ZP_07789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus crispatus CTV-05]
gi|423317791|ref|ZP_17295688.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
FB049-03]
gi|423321128|ref|ZP_17299000.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
FB077-07]
gi|227863194|gb|EEJ70640.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01]
gi|256614320|gb|EEU19521.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN]
gi|256714265|gb|EEU29252.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
MV-1A-US]
gi|260573825|gb|EEX30381.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US]
gi|290921781|gb|EFD98802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus crispatus 214-1]
gi|310895321|gb|EFQ44388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus crispatus CTV-05]
gi|405596451|gb|EKB69787.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
FB077-07]
gi|405597727|gb|EKB70978.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
FB049-03]
Length = 375
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 49/252 (19%)
Query: 7 MEFDYVASGHYANVVHSS--ADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA V + H +P KDQTYFLS LSQ Q+ ++IF L + P+
Sbjct: 119 LDADYIAMGHYAKTVKDTNGVTHMMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLTKPQ 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P + + G + +H G +
Sbjct: 179 VREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGEHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD++ N + V + Y S +A + +G
Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLNASDMSFFTGK 298
Query: 143 PPEKISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
P ++H + C + + ++ A V E + + GQ Y+G CL
Sbjct: 299 PDHDF-EMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYKGEECL 357
Query: 199 GSGVILEAWDDQ 210
G G I A+ ++
Sbjct: 358 GGGNIDAAYQEE 369
>gi|317505238|ref|ZP_07963170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella salivae DSM 15606]
gi|315663667|gb|EFV03402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella salivae DSM 15606]
Length = 366
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 102/245 (41%), Gaps = 53/245 (21%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
+D +A+GHYA S +KDQT FL+ + QL++ IF
Sbjct: 123 YDLIATGHYAQTEWSDGRKWLITSPDPIKDQTDFLAQIYDWQLKKAIFPIGNFEKNDVRK 182
Query: 54 -----HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
HL+ R G ++E ETG + +H+G WF+T
Sbjct: 183 IAEREHLINAKRRDSQGICFLGDIDYNEYVRRYLGECVGDVIELETGKKIGEHKGLWFHT 242
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLS-GL 142
IGQ + LG + +VV+KD+E+NI++VS Y Y K H FHA + L
Sbjct: 243 IGQRKGLGFGGGPW-FVVKKDVEHNILYVSHGYDPETAYKQSFKIHDFHAVTFCSEGVAL 301
Query: 143 P--PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR--RCL 198
P PE+I+ + + E GE ++ G+A GQF Y RC
Sbjct: 302 PDLPERIT--FKIRHTPEYLPAKLEKTGEQSYIIHADSKIHGVAPGQFCVIYDAEHHRCY 359
Query: 199 GSGVI 203
GSG I
Sbjct: 360 GSGEI 364
>gi|375088389|ref|ZP_09734729.1| tRNA-specific 2-thiouridylase mnmA [Dolosigranulum pigrum ATCC
51524]
gi|374562427|gb|EHR33757.1| tRNA-specific 2-thiouridylase mnmA [Dolosigranulum pigrum ATCC
51524]
Length = 374
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 104/260 (40%), Gaps = 59/260 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D + DYVA+GHYA V + S KDQTYFL+ LSQ QL+R++F L
Sbjct: 112 LDYAMDLGADYVATGHYARVERDDNGTVHMLRGVDSNKDQTYFLNQLSQDQLQRVMFPLG 171
Query: 57 LYPRLTI------------------------------------PMEGIILEAETGDFLEK 80
+ + P + ++ GD +
Sbjct: 172 EMEKPDVRQLAEEAGLKTADKKDSTGICFIGERDFKEFLMNYLPAQPGEMQTLDGDVVNT 231
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLF---- 131
H G +YTIGQ Q LG+ +V+ KD+E N++ V + ++ HL+
Sbjct: 232 HDGLMYYTIGQRQGLGIGGSKEYGNEPWFVIGKDLERNVLLVGQGFHH----EHLYATHL 287
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A P E + + F + +TI+ +D E A+V+ E + + GQ
Sbjct: 288 EASDFSFTVKAPAEAEFRCTAKFRYRTDDVPVTIKMNDDRTE--AIVEFDEPQRAITPGQ 345
Query: 188 FAAFYQGRRCLGSGVILEAW 207
Y G CLG G I A+
Sbjct: 346 AIVLYDGEECLGGGTIDRAY 365
>gi|260799001|ref|XP_002594488.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae]
gi|229279722|gb|EEN50499.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae]
Length = 383
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 106/255 (41%), Gaps = 61/255 (23%)
Query: 3 AISSMEFDYVASGHYANV-VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRL 61
+ E D +A+GHYA +H + S KDQT+FLS + Q LRR +F L L
Sbjct: 113 VMDKFEADALATGHYARTSIHDVKLLQALDSWKDQTFFLSQIPQQALRRALFPL---GEL 169
Query: 62 TIPM-------------------EGII--------------LEAETGDF--------LEK 80
T P+ GI LE E G F L +
Sbjct: 170 TKPVVKQMAQDAGFTHIAKKKESMGICFIGTRNFPTFLQEYLETEPGQFVSVVDGKVLGE 229
Query: 81 HRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
H+G YTIGQ LG + + +VV++D N +FV R L S+ ++
Sbjct: 230 HKGACMYTIGQRAGLGGMKEPW-FVVDRDTSTNSIFVCPTTDHPALYRQLIMTESVHWIA 288
Query: 141 GLPPE-KISQLHSVFY---------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
P + + Q++ + C+LT+ G + V L+E + L GQ+A
Sbjct: 289 DPPRDLYVDQMYDCHFRFQHRMPLVKCTLTLS-----GNNQVWVSLAEPIRALTPGQYAV 343
Query: 191 FYQGRRCLGSGVILE 205
FY+G CLG G I++
Sbjct: 344 FYKGDECLGGGKIIK 358
>gi|345883914|ref|ZP_08835336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. C561]
gi|345043242|gb|EGW47318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. C561]
Length = 364
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 117/258 (45%), Gaps = 70/258 (27%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
++D +A+GHYA + +S D VKDQT FL+ + QL++ IF + Y
Sbjct: 121 DYDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQIYDWQLKKAIFPIGHYE 175
Query: 60 RLTI---------------PMEGI----------------------ILEAETGDFLEKHR 82
+ + +GI ++E ETG + +H+
Sbjct: 176 KNEVREIAERENLINAHRKDSQGICFLGNIDYNEYVRRYLGEQIGDVIELETGKKIGEHK 235
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLK 137
G WF+TIGQ + LGL + +V++KD+ NI++VS Y Y D H FH
Sbjct: 236 GLWFHTIGQRKGLGLGGGPW-FVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHF---- 290
Query: 138 LLSGLP--PEKIS--QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY- 192
L G+ PEKI+ H+ Y+ + T+ DG ++ +++ G+A GQF Y
Sbjct: 291 LTEGITTLPEKITFKIRHTPEYHPA-TVNQLSDGR---CLIHSAKNIHGVAPGQFCVVYD 346
Query: 193 -QGRRCLGSGVILEAWDD 209
Q RC GSG I + D+
Sbjct: 347 EQHHRCFGSGEIALSVDE 364
>gi|407716430|ref|YP_006837710.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Cycloclasticus sp. P1]
gi|407256766|gb|AFT67207.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cycloclasticus sp. P1]
Length = 365
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 59/255 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D + + DY+A+GHY + + + KDQ+YFL L Q QL R +F +
Sbjct: 110 LDYATELGADYIATGHYTQIAQQHNQFQLLRGLDNNKDQSYFLYTLGQTQLSRSLFPIGN 169
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
+ + P + ++ G+ + +H
Sbjct: 170 MEKPAVRELAQKAGFINSRKKDSTGICFIGERKFKDFLQRYLPAQPGLMNTPEGETIGEH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
+G +YT+GQ Q LG+ I YVVEKD++NNI+ V++ + + + +A L
Sbjct: 230 QGLMYYTLGQRQGLGIGGIKSAAEEPWYVVEKDLKNNILVVAQGHDHTLMQSNTLNASQL 289
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQF 188
+SG Q S + C+ + + G+D +VQ + + + GQ
Sbjct: 290 SWVSG-------QAVSNSFRCTAKTRYRQKDQACQVTLIGDDHCLVQFDDPQRAVTPGQS 342
Query: 189 AAFYQGRRCLGSGVI 203
FY CLG G+I
Sbjct: 343 VVFYNNEVCLGGGII 357
>gi|297205825|ref|ZP_06923220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii JV-V16]
gi|297148951|gb|EFH29249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii JV-V16]
Length = 375
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 108/264 (40%), Gaps = 71/264 (26%)
Query: 6 SMEFDYVASGHYANVVH--SSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLVLYPRL 61
S++ DY+A GHYA V + H +P KDQTYFLS LSQ Q++ +IF L L
Sbjct: 118 SLDADYIAMGHYAKTVKDKNGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLA---NL 174
Query: 62 TIPM------------------EGIILEAE---------------------TGDFLEKHR 82
T P GI E G+ + H
Sbjct: 175 TKPQVREIAERSGLATAKKKDSTGICFIGERNFKKFLSEFLPAKPGKMVTPDGNVVGNHS 234
Query: 83 GFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
G +YTIGQ Q LGL +VV KD++ N + V + Y D R +A SLK
Sbjct: 235 GLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGY---DSPR--LYATSLK- 288
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQGLAAG 186
SG+ + H V ++C+ + + D+AV V E + + G
Sbjct: 289 ASGMSFYTGNPDHDVEFDCTAKFRYRQ---ADVAVHVKYHAADKTCDVYFDEPARAVTPG 345
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q Y+G CLG G I A+ ++
Sbjct: 346 QALVLYKGEECLGGGNIDAAYQEE 369
>gi|386814536|ref|ZP_10101754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiothrix nivea DSM 5205]
gi|386419112|gb|EIJ32947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiothrix nivea DSM 5205]
Length = 369
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 58/255 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVH----SSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D + DY+A+GHYA + H S K KDQTYFL L Q QL+R +F +
Sbjct: 109 LDLALELGADYIATGHYARITHEPDGSVQMLKGVDDNKDQTYFLYTLQQHQLQRSLFPVG 168
Query: 57 -------------------------------------LYPRLTIPMEGIILEAETGDFLE 79
R G I+ A+ G+ +
Sbjct: 169 ELEKSRVRDIALEVGFSTARKKDSTGICFIGERKFRDFLQRFLPARPGGIVTAD-GEVIG 227
Query: 80 KHRGFWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAG 134
KH G +YT+GQ Q LG+ +VV+KD+ NN + V++ + +H A
Sbjct: 228 KHHGLMYYTLGQRQGLGIGGRKDATEAPWFVVDKDMSNNRLIVTQGHQHALLMKHFLLAS 287
Query: 135 SLKLLSGLPP-EKISQLHSVFYNCSLTIEHCE-----DGGEDIAVVQLSEDDQGLAAGQF 188
L ++G PP ++ + Y T E CE D D+ + + + GQ
Sbjct: 288 QLHWIAGKPPADRFGCKAKIRYR--QTEETCEVRLLPDNSCDVC---FPDAQRAITPGQS 342
Query: 189 AAFYQGRRCLGSGVI 203
FYQG CLG G+I
Sbjct: 343 IVFYQGDTCLGGGII 357
>gi|256850945|ref|ZP_05556334.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN]
gi|260661159|ref|ZP_05862073.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN]
gi|256616007|gb|EEU21195.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN]
gi|260548096|gb|EEX24072.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN]
Length = 375
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 108/264 (40%), Gaps = 71/264 (26%)
Query: 6 SMEFDYVASGHYANVVH--SSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLVLYPRL 61
S++ DY+A GHYA V + H +P KDQTYFLS LSQ Q++ +IF L L
Sbjct: 118 SLDADYIAMGHYAKTVKDKNGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLA---NL 174
Query: 62 TIPM------------------EGIILEAE---------------------TGDFLEKHR 82
T P GI E G+ + H
Sbjct: 175 TKPQVREIAERAGLATAKKKDSTGICFIGERNFKKFLSEFLPAKPGKMVTPDGNVVGNHS 234
Query: 83 GFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
G +YTIGQ Q LGL +VV KD++ N + V + Y D R +A SLK
Sbjct: 235 GLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGY---DSPR--LYATSLK- 288
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQGLAAG 186
SG+ + H V ++C+ + + D+AV V E + + G
Sbjct: 289 ASGMSFYTGNPDHDVEFDCTAKFRYRQ---ADVAVHVKYHAADKTCDVYFDEPARAVTPG 345
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q Y+G CLG G I A+ ++
Sbjct: 346 QALVLYKGEECLGGGNIDAAYQEE 369
>gi|417075224|ref|ZP_11950370.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus MTCC
5462]
gi|328462804|gb|EGF34672.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus MTCC
5462]
Length = 372
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 108/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA VVH AD KDQTYFLS LSQ QL++
Sbjct: 112 LDYAEQLNADYIAMGHYAQVKTDEQGVVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 166
Query: 52 IFHL--VLYPRLTIPME-------------GIILEAE-------------------TGDF 77
+F + + P + E GI E T D
Sbjct: 167 MFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 226
Query: 78 LEK--HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+EK H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 227 VEKGTHDGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 286
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + F + +TI + +DG A+V + + GQ
Sbjct: 287 SASNLNWTTGEAPADGTHMTAKFRYRQRDTGVTIHYHDDG---TAIVDFDVPVRAITPGQ 343
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 344 AVVFYDGEECLGGGTIDAAY 363
>gi|258508299|ref|YP_003171050.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus GG]
gi|257148226|emb|CAR87199.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus GG]
Length = 372
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DY+A GHYA V A H + KDQTYFLS LSQ QL++ +F +
Sbjct: 112 LDYAEQLNADYIAMGHYAQVKTDEQGAVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIG 171
Query: 56 -VLYPRLTIPME-------------GIILEAE-------------------TGDFLEK-- 80
+ P + E GI E T D +EK
Sbjct: 172 HLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDGVEKGT 231
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ Q LG+ +VV KD++ NI++V + + + A +L
Sbjct: 232 HDGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNL 291
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+G P + + + F + +TI + +DG A V + + GQ FY
Sbjct: 292 NWTTGEAPADGTHMTAKFRYRQRDTGVTIHYHDDG---TATVDFDVPVRAITPGQAVVFY 348
Query: 193 QGRRCLGSGVILEAW 207
G CLG G I A+
Sbjct: 349 DGEECLGGGTIDAAY 363
>gi|426394862|ref|XP_004063704.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 isoform 1
[Gorilla gorilla gorilla]
Length = 421
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 94/222 (42%), Gaps = 55/222 (24%)
Query: 32 SVKDQTYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI--------- 63
S KDQT+FLS +SQ LRR IF H VL + ++
Sbjct: 169 SFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRN 228
Query: 64 ----------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENN 113
P G + E L H+G++ YT+GQ +G L + YVVEKD
Sbjct: 229 FEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKG 287
Query: 114 IVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIE 162
VFV+ R L + ++ PP +K+ + H F + C LT+
Sbjct: 288 DVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN 347
Query: 163 HCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+DG + VQ + LA GQFA FY+G CLGSG IL
Sbjct: 348 --QDGTVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 384
>gi|410965844|ref|XP_003989450.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Felis
catus]
Length = 550
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 105/268 (39%), Gaps = 71/268 (26%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P +KDQ
Sbjct: 111 AVDNLGADAVATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADGLKDQ 170
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR +F H VL + ++
Sbjct: 171 TFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNFENFI 230
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 231 LQYLQPRPGKFISIEDNRVLGTHKGWFLYTLGQRARIGGLREPW-YVVEKDGTKGDVFVA 289
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLS 177
R L + ++ PP + S C LT+ +DG + V+
Sbjct: 290 PRTDHPALYRDLLRTSRVHWIAEEPPVPPLRTPLSYTVPCVLTLN--QDGTVWVTAVKAV 347
Query: 178 EDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ LA GQFA FY+G CLGSG IL
Sbjct: 348 ---RALAPGQFAVFYKGDECLGSGKILR 372
>gi|295692704|ref|YP_003601314.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus crispatus ST1]
gi|295030810|emb|CBL50289.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus ST1]
Length = 375
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 102/252 (40%), Gaps = 49/252 (19%)
Query: 7 MEFDYVASGHYANVVHSS--ADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA V + H +P KDQTYFLS LSQ Q+ ++IF L + P+
Sbjct: 119 LDADYIAMGHYAKTVKDANGVTHMMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLTKPQ 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P + + G + +H G +
Sbjct: 179 VREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGEHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD++ N + V + Y S A + +G
Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMSFFTGK 298
Query: 143 PPEKISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
P ++H + C + + ++ A V E + + GQ Y+G CL
Sbjct: 299 PDHDF-EMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYKGEECL 357
Query: 199 GSGVILEAWDDQ 210
G G I A+ ++
Sbjct: 358 GGGNIDAAYQEE 369
>gi|209529646|ref|NP_001129348.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Rattus norvegicus]
gi|149065691|gb|EDM15564.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
(predicted), isoform CRA_a [Rattus norvegicus]
Length = 417
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 110/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAVATGHYARTSLEDEEVFEQKHTKRPDGLFRNRFEVRNPVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNLEHFL 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++ L + YVVEKD V V+
Sbjct: 234 LQYLQPRPGKFISIEDNRVLGTHKGWFLYTLGQRAKISGLSEPW-YVVEKDGTKGDVLVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ +GLA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVKAV---RGLALGQFAVFYKGEECLGSGKILR 385
>gi|385827971|ref|YP_005865743.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus GG]
gi|259649616|dbj|BAI41778.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus GG]
Length = 377
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DY+A GHYA V A H + KDQTYFLS LSQ QL++ +F +
Sbjct: 117 LDYAEQLNADYIAMGHYAQVKTDEQGAVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIG 176
Query: 56 -VLYPRLTIPME-------------GIILEAE-------------------TGDFLEK-- 80
+ P + E GI E T D +EK
Sbjct: 177 HLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDGVEKGT 236
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ Q LG+ +VV KD++ NI++V + + + A +L
Sbjct: 237 HDGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNL 296
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+G P + + + F + +TI + +DG A V + + GQ FY
Sbjct: 297 NWTTGEAPADGTHMTAKFRYRQRDTGVTIHYHDDG---TATVDFDVPVRAITPGQAVVFY 353
Query: 193 QGRRCLGSGVILEAW 207
G CLG G I A+
Sbjct: 354 DGEECLGGGTIDAAY 368
>gi|294672865|ref|YP_003573481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella ruminicola 23]
gi|294474344|gb|ADE83733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella ruminicola 23]
Length = 359
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 110/255 (43%), Gaps = 63/255 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDK------PSVKDQTYFLSHLSQAQLRRLIF- 53
D ++D +A+GHYA + + ++ DK VKDQT FL+ ++ QL++ +F
Sbjct: 114 FDEKRGHDYDLIATGHYA--MTETDENGDKWLCTSPDPVKDQTDFLAQIADWQLKKALFP 171
Query: 54 ----------------HLV--------------------LYPRLTIPMEGIILEAETGDF 77
HLV R G ++E ETG
Sbjct: 172 IGHYVKDEVRVIAEREHLVNAKRKDSQGICFLGKINYNDYIRRYLGEQPGDVIELETGKR 231
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFH 132
+ +H+G WF+TIGQ + +G + +VV+KD+ NNI++VS Y Y D H FH
Sbjct: 232 IGEHKGLWFHTIGQRKGMGFGGGPW-FVVKKDVANNILYVSHGYDPETAYKADFPVHDFH 290
Query: 133 AGSLKLLSGLPPEKIS--QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
L L P KI+ H+ Y+ T+E +V + G+A GQF
Sbjct: 291 F----LTKELQPTKITFKIRHTPEYH-PATLEWT---SPSTCMVHSKDKIHGVAPGQFCV 342
Query: 191 FYQG--RRCLGSGVI 203
Y RCLGSG I
Sbjct: 343 VYDKDHHRCLGSGEI 357
>gi|73969262|ref|XP_538325.2| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Canis
lupus familiaris]
Length = 425
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 111/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAVATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR +F H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNFENFI 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++G L + YVVEKD VFV+
Sbjct: 234 LQYLQPRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPW-YVVEKDGTKGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVKAV---RALALGQFAVFYKGDECLGSGKILR 385
>gi|422416013|ref|ZP_16492970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua FSL J1-023]
gi|313623686|gb|EFR93838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua FSL J1-023]
Length = 371
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 101/246 (41%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGDMRTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++NN++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDISFTTNSEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTFECTAKFRYRQTDTKVTVNMREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|366086097|ref|ZP_09452582.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus zeae KCTC 3804]
Length = 372
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 106/256 (41%), Gaps = 53/256 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
+D + DY+A GHYA V + D + KDQTYFLS LSQ QL++ +F +
Sbjct: 112 LDYAEQLNADYIAMGHYAQV-KTDEDGVIHMLRGADGNKDQTYFLSQLSQDQLKKSMFPI 170
Query: 56 --VLYPRL-------------TIPMEGII--------------LEAETGDFLE------- 79
+ P + GI L A+ G +
Sbjct: 171 GHLQKPEVRKIAAAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDGVEMG 230
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ Q LG+ +VV KD++ NI++V + + + A +
Sbjct: 231 THDGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASN 290
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
L +G P + + + + F + +TI + +DG A V E + + GQ F
Sbjct: 291 LNWTTGEAPAEGTHMTAKFRYRQRDTGVTIRYHDDG---TATVDFDEPVRAITPGQAVVF 347
Query: 192 YQGRRCLGSGVILEAW 207
Y G CLG G I A+
Sbjct: 348 YNGDECLGGGTIDAAY 363
>gi|395239323|ref|ZP_10417203.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus gigeriorum CRBIP
24.85]
gi|394476418|emb|CCI87180.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus gigeriorum CRBIP
24.85]
Length = 375
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 98/249 (39%), Gaps = 49/249 (19%)
Query: 7 MEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA V + + K KDQTYFLS LSQ Q++++IF L + P+
Sbjct: 119 LDADYIAMGHYAKTVTDANGITHMMRPKDGNKDQTYFLSQLSQDQIKKVIFPLADLTKPQ 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P + + G + +H G +
Sbjct: 179 VREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTADGTVVGEHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ LGL +VV KD++ N + V + Y S A + +G
Sbjct: 239 YTIGQRSGLGLGSTKESTDPWFVVGKDLDKNELIVEQGYDSPLLYADRLTASDMSFFTGR 298
Query: 143 PPEKISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
P E + + H + C L + + A V E + + GQ Y G CL
Sbjct: 299 PKEDV-EFHCTAKFRYRQCDLGVTVQYHADSNTADVYFDEPARAITPGQALVLYDGDECL 357
Query: 199 GSGVILEAW 207
G G I A+
Sbjct: 358 GGGNIDAAY 366
>gi|219685499|ref|ZP_03540316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia garinii Far04]
gi|219672898|gb|EED29920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Borrelia garinii Far04]
Length = 344
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 49/198 (24%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYARIQIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLCFPLGTLFKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIVEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD++ NI+++S N + + F + ++G+P +
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINGMPSD-- 292
Query: 148 SQLHSVFYNCSLTIEHCE 165
F N + I H E
Sbjct: 293 ------FENFKIKIRHGE 304
>gi|209364581|ref|NP_001125570.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Pongo abelii]
Length = 421
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 109/277 (39%), Gaps = 81/277 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H KP S K Q
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 234 LQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+ VQ + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 384
>gi|335039193|ref|ZP_08532373.1| tRNA-specific 2-thiouridylase mnmA [Caldalkalibacillus thermarum
TA2.A1]
gi|334180927|gb|EGL83512.1| tRNA-specific 2-thiouridylase mnmA [Caldalkalibacillus thermarum
TA2.A1]
Length = 388
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 106/259 (40%), Gaps = 56/259 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIF---H 54
+D S+ D+VA+GHYA V H+ K KDQTYFL+ L+QAQL +++F H
Sbjct: 127 LDHALSLGADFVATGHYAKVDLKDGYHRLLRGKDPGKDQTYFLNQLNQAQLSKVLFPIGH 186
Query: 55 LVLYPRLTIPME----------------------------------GIILEAETGDFLEK 80
L I E G I + TG+ K
Sbjct: 187 LHKQQVRQIAEEAGLPNAKKKDSTGICFIGERNFKAFLSNYLPAQPGEIRQKSTGELKGK 246
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRN----YYSFDKKRHLFHAGS 135
H G +YTIGQ Q LG+ +VV+KD+ NI++V Y F+ A
Sbjct: 247 HDGLMYYTIGQRQGLGIGGPGGPWFVVDKDLGRNILYVEAGEDNPYLYFEG----LEASQ 302
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
L + G PP + + F + T+E DGG V E + + GQ F
Sbjct: 303 LNWIKGNPPGQRFTCTAKFRYRQPDKPCTVE-VLDGGR--CRVMFDEPQRAITPGQAVVF 359
Query: 192 YQGRRCLGSGVILEAWDDQ 210
Y G CLG +I A D+
Sbjct: 360 YHGEECLGGAIIDVAIQDE 378
>gi|397601234|gb|EJK57851.1| hypothetical protein THAOC_22066 [Thalassiosira oceanica]
Length = 646
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 105/270 (38%), Gaps = 69/270 (25%)
Query: 5 SSMEFDYVASGHYANVVHSSADHKDKPS-----------VKDQTYFLSHLSQAQLRRLIF 53
S M+FD+VASGHYA + + + VKDQ+YFL L+Q QL +++F
Sbjct: 359 SGMKFDHVASGHYARLEDEPRESSPGTTRAKRLFRAPDPVKDQSYFLCALTQKQLSKVLF 418
Query: 54 HLVLY--------------PRLTIP-----------------------MEGIILEAETGD 76
+ Y P P G +++A G+
Sbjct: 419 PIGQYKKSEVRQLASEFNLPNRNRPDSQGLCFLGKVKFDEFLSSYLGSRPGDVVDAMNGE 478
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR------YVVEKDIENNIVFVSRNY--YSFDKKR 128
+ KH G W++T+GQ + +G + YVV KD ++V+VS Y F K R
Sbjct: 479 VIGKHNGLWYHTVGQRKGIGKVMFPLATAHGPWYVVAKDQSKDVVYVSNRYDEDDFAKAR 538
Query: 129 HLFHAGSLKLLSGLPPEKISQLHSVF--YNCSLTIEHCE---------DGGEDIAVVQLS 177
F ++ +S P + + + I H G V+L
Sbjct: 539 SEFEVEDVRWISNQHPAQAMSSDGKWEVVRFDMKIRHGPKIVQGSLQLKGDGSSGNVKLD 598
Query: 178 EDDQGLAAGQFAAFYQ--GRRCLGSGVILE 205
D GLA GQ+ FY LG+GVI E
Sbjct: 599 LKDGGLAPGQYVVFYSQTSDEVLGAGVISE 628
>gi|258539512|ref|YP_003174011.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus Lc 705]
gi|257151188|emb|CAR90160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus Lc 705]
Length = 372
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA VVH AD KDQTYFLS LSQ QL++
Sbjct: 112 LDYAEQLNADYIAMGHYAQVKTDEQGVVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 166
Query: 52 IFHL--VLYPRLTIPME-------------GIILEAE-------------------TGDF 77
+F + + P + E GI E T D
Sbjct: 167 MFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 226
Query: 78 LEK--HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+EK H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 227 VEKGTHDGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 286
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + F + +TI + +DG A V + + GQ
Sbjct: 287 SASNLNWTTGEAPADGTHMTAKFRYRQRDTGVTIHYHDDG---TATVDFDVPVRAITPGQ 343
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 344 AVVFYDGEECLGGGTIDAAY 363
>gi|330995326|ref|ZP_08319236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paraprevotella xylaniphila YIT 11841]
gi|329575821|gb|EGG57345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paraprevotella xylaniphila YIT 11841]
Length = 352
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 47/240 (19%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
+D +A+GHYA V + VKDQT FL+ + Q+ +L+F +
Sbjct: 113 YDKIATGHYATVRERDGKIWLGTARDPVKDQTDFLAQIDSLQVAKLMFPVGDLMKEEVRR 172
Query: 57 ----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG ++E ETG + H+G+WF+T
Sbjct: 173 IAETQRLPSAKRRDSQGICFLGQIDYNDFVRRFLGEREGAVVEIETGRRIGTHKGYWFHT 232
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + LGL + +VV+KD+E NI++VS Y + + H F+ ++G P
Sbjct: 233 IGQRKGLGLGGGPW-FVVKKDVEQNILYVSHGYDTLLQYGHSFNLKDFHFITGNPWGDAP 291
Query: 149 QLHSVF---YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR--CLGSGVI 203
++ F + G ++ E QG+A GQF Y C+GSG I
Sbjct: 292 EVDVTFKTRHQPHFMKGRLYRAGHGYR-LESPERIQGIAPGQFGVVYDAAAEICIGSGEI 350
>gi|229552096|ref|ZP_04440821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LMS2-1]
gi|385835159|ref|YP_005872933.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus ATCC 8530]
gi|229314529|gb|EEN80502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LMS2-1]
gi|355394650|gb|AER64080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus ATCC 8530]
Length = 377
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA VVH AD KDQTYFLS LSQ QL++
Sbjct: 117 LDYAEQLNADYIAMGHYAQVKTDEQGVVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 171
Query: 52 IFHL--VLYPRLTIPME-------------GIILEAE-------------------TGDF 77
+F + + P + E GI E T D
Sbjct: 172 MFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 231
Query: 78 LEK--HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+EK H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 232 VEKGTHDGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 291
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + F + +TI + +DG A V + + GQ
Sbjct: 292 SASNLNWTTGEAPADGTHMTAKFRYRQRDTGVTIHYHDDG---TATVDFDVPVRAITPGQ 348
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 349 AVVFYDGEECLGGGTIDAAY 368
>gi|156088637|ref|XP_001611725.1| tRNA methyl transferase family protein [Babesia bovis]
gi|154798979|gb|EDO08157.1| tRNA methyl transferase family protein [Babesia bovis]
Length = 665
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 115/263 (43%), Gaps = 70/263 (26%)
Query: 9 FDYVASGHYANVVHSSADHKD---------KPSVKDQTYFLSHLSQAQLRRLIFHL---- 55
F ++ASGHYA+++ + KDQTYFLS LSQ+QLRR++F L
Sbjct: 402 FSHIASGHYASIIEDLVPGTSTRIARLRLCRDLRKDQTYFLSRLSQSQLRRVMFPLSQLY 461
Query: 56 ----------------------------------VLYPRLTIPMEGIILEAETGDFLEKH 81
L RL + G I++ +TG+ + +H
Sbjct: 462 KNEVRTIARTLGFSNYDRKESMGLCFLGKVDVKSFLSHRLG-EVPGPIVDHDTGNCIGRH 520
Query: 82 RGFWFYTIGQHQELG-LLYIVY-----RYVVEKDIENNIVFVSRNYYSF-----DKKRHL 130
G + +TIGQ + + L V RYVV KDI+ N ++VS Y++ R
Sbjct: 521 HGLFHFTIGQREGIARYLNSVRDTNQSRYVVAKDIDTNTLYVSTRYHTKCYTEPGSVRRR 580
Query: 131 FHAGSLKLLSGLPPEK--ISQLHSVFYNC--SLTIEHCEDGGEDI-----AVVQLSEDDQ 181
F ++ +P K I+ +S+ S T+ + +D+ A V L + D
Sbjct: 581 FRISDIRW--NVPDFKRFITDPNSLSMKVRHSPTLCRGDISFDDLDTASGASVHLEKADI 638
Query: 182 GLAAGQFAAFYQGRRCLGSGVIL 204
GLA GQ+A Y G CLG+G I+
Sbjct: 639 GLATGQYAVIYSGLNCLGAGKIV 661
>gi|238855258|ref|ZP_04645577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii 269-3]
gi|260664617|ref|ZP_05865469.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US]
gi|313471923|ref|ZP_07812415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii 1153]
gi|238832150|gb|EEQ24468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii 269-3]
gi|239529151|gb|EEQ68152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus jensenii 1153]
gi|260561682|gb|EEX27654.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US]
Length = 375
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 108/264 (40%), Gaps = 71/264 (26%)
Query: 6 SMEFDYVASGHYANVVHSS--ADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLVLYPRL 61
S++ DY+A GHYA V + H +P KDQTYFLS LSQ Q++ +IF L L
Sbjct: 118 SLDADYIAMGHYAKTVKDANGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLA---NL 174
Query: 62 TIPM------------------EGIILEAE---------------------TGDFLEKHR 82
T P GI E G+ + +H
Sbjct: 175 TKPQVREIAEKAGLATAKKKDSTGICFIGERNFKKFLSEFLPAKPGKMVTPDGNVVGQHG 234
Query: 83 GFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
G +YTIGQ Q LGL +VV KD++ N + V + Y D R +A SLK
Sbjct: 235 GLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGY---DSPR--LYATSLK- 288
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQGLAAG 186
SG+ + H V ++C+ + + D+ V V E + + G
Sbjct: 289 ASGMSFYTGNPDHDVEFDCTAKFRYRQ---ADVGVHVKYHAATKTCDVYFDEPARAVTPG 345
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q Y+G CLG G I A+ ++
Sbjct: 346 QALVLYKGEECLGGGNIDAAYQEE 369
>gi|421769054|ref|ZP_16205763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LRHMDP2]
gi|421771317|ref|ZP_16207977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LRHMDP3]
gi|411185450|gb|EKS52578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LRHMDP2]
gi|411185903|gb|EKS53029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus LRHMDP3]
Length = 377
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA VVH AD KDQTYFLS LSQ QL++
Sbjct: 117 LDYAEQLNADYIAMGHYAQVKTDEQGVVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 171
Query: 52 IFHL--VLYPRLTIPME-------------GIILEAE-------------------TGDF 77
+F + + P + E GI E T D
Sbjct: 172 MFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 231
Query: 78 LEK--HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+EK H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 232 VEKGTHDGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 291
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + F + +TI + +DG A V + + GQ
Sbjct: 292 SASNLNWTTGEAPADGTHMTAKFRYRQRDTGVTIHYHDDG---TATVDFDVPVRAITPGQ 348
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 349 AVVFYDGEECLGGGTIDAAY 368
>gi|429739516|ref|ZP_19273270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella saccharolytica F0055]
gi|429156905|gb|EKX99524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella saccharolytica F0055]
Length = 359
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 100/247 (40%), Gaps = 54/247 (21%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIP 64
E+D +A+GHYA + VKDQT FL+ + QL++ +F + Y + +
Sbjct: 121 EYDLIATGHYAQTERINGQKWLVTSPDPVKDQTDFLAQIYDWQLQKALFPIGHYRKGEVR 180
Query: 65 M-------------------------------------EGIILEAETGDFLEKHRGFWFY 87
G +LE ETG + HRG WF+
Sbjct: 181 RIAEREHLINARRKDSQGICFLGKINYNDYLRRYLGENPGEVLELETGKKIGMHRGLWFH 240
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ LG + Y V+KD+ N+++VS+ + + F L LL+ P + +
Sbjct: 241 TIGQRHGLGFGGGPW-YAVKKDVVQNVLYVSKGFEPSTAYKKDFPINDLHLLTA-PLDSL 298
Query: 148 SQLHSVFYNCSLTIEH----CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG--RRCLGSG 201
V + T EH E GE +V QG+A GQF Y RC GS
Sbjct: 299 ----EVTFKIRHTPEHYRAVLEPIGEGAYLVHAEAPIQGVAPGQFCVLYDKVHHRCYGSA 354
Query: 202 VILEAWD 208
I AWD
Sbjct: 355 EI--AWD 359
>gi|402884589|ref|XP_003905760.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Papio
anubis]
Length = 421
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 108/278 (38%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 234 LQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDGVKGNVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRRDHPALYRDLLRTSRVHWITEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ VQ L GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVQAV---HALTTGQFAVFYKGDECLGSGKILR 385
>gi|261880130|ref|ZP_06006557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bergensis DSM 17361]
gi|270333185|gb|EFA43971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bergensis DSM 17361]
Length = 384
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 112/276 (40%), Gaps = 80/276 (28%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
D + ++D +A+GHYA + +S D VKDQT FL+ + QL++ I
Sbjct: 114 FDEKAGHDYDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQIEGWQLKKAI 168
Query: 53 FHLVLYPRLTI-------------------------------------PMEGIILEAETG 75
F + Y + + G I+E ETG
Sbjct: 169 FPIGHYEKNEVREIAEREHLINARRKDSQGICFLGNIDYNEYVRRYLGEQPGDIVELETG 228
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+ +H G WF+TIGQ + LGL + +V++KD+E+N+++VS Y + F
Sbjct: 229 TKIGEHSGHWFHTIGQRKGLGLSGGPW-FVIKKDVEHNVLYVSHGYDPETAYKKDFKIHD 287
Query: 136 LKLLS--GLPPEKISQL-----------------HSVFY-------NCSLTIEHCEDGGE 169
L L+ PP +S+ H+ Y N + + +H E G
Sbjct: 288 LHWLTEEPTPPHHLSEASESQKPGSYIPITFKIRHTPEYHPGYLDLNAASSSDHTELTG- 346
Query: 170 DIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGSGVI 203
D A + + G+A GQF Y Q RC GSG I
Sbjct: 347 DTATIHSLDKIHGVAPGQFCVIYDEQHHRCFGSGEI 382
>gi|302392703|ref|YP_003828523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Acetohalobium arabaticum DSM 5501]
gi|302204780|gb|ADL13458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Acetohalobium arabaticum DSM 5501]
Length = 361
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 97/240 (40%), Gaps = 50/240 (20%)
Query: 11 YVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLY-------- 58
Y+A+GHYA ++ + K KDQTY L +L+Q QL+ IF L Y
Sbjct: 127 YMATGHYAKIIQNEDGRYLLKKSAAPDKDQTYMLYNLTQEQLKHTIFPLAEYTKQQTREL 186
Query: 59 ---------------------------------PRLTIPMEGIILEAETGDFLEKHRGFW 85
P + P G IL+ E G+ L +H+G
Sbjct: 187 AKDYDLKVYDKPESQEICFIPDDDYRRFLQENHPEIIEP--GPILDVE-GNKLGEHKGLP 243
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
FYTIGQ + LGL YVV+ D E N + V N F K+ + + + P+
Sbjct: 244 FYTIGQRRGLGLENNKKLYVVDMDPERNALIVGDNEDVFAKELIVEEINWISIEKLTEPK 303
Query: 146 KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
++ + YN E++A V +E + + GQ A FY +G GVI E
Sbjct: 304 EVQA--KIRYNSPAAEATIYPVEENVAKVVFAEPQRAITPGQSAVFYNQNIVVGGGVIKE 361
>gi|402298188|ref|ZP_10817898.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus
alcalophilus ATCC 27647]
gi|401726591|gb|EJS99812.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus
alcalophilus ATCC 27647]
Length = 403
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 50/247 (20%)
Query: 10 DYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA V + + KDQTYFL+ LSQ QL +++F L P+ +
Sbjct: 158 DYVATGHYAQVKEVDGEVQLLRGADDNKDQTYFLNALSQQQLSKVMFPLGHLPKKEVREI 217
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + ++ G+ KH G +YT+G
Sbjct: 218 AKQANLATATKKDSTGICFIGERNFKEFLSEFLPAQPGEMQTFDGEVKGKHDGLMYYTLG 277
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q Q LG+ +V++K+++ NI++V + Y+ A + ++ P +
Sbjct: 278 QRQGLGIGGPGEPWFVIDKNVKENILYVGQGYHHDGLYTEGLEAIEMNYIATEPRLEPFT 337
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI-- 203
+ F + +T+ DG A VQ E + + GQ Y+G RCLG G I
Sbjct: 338 CTAKFRYRQTDVPVTVYPQADG---TAKVQFDERQRAITPGQAVVLYEGERCLGGGTIDR 394
Query: 204 -LEAWDD 209
++ W++
Sbjct: 395 VIKKWEN 401
>gi|297584733|ref|YP_003700513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus selenitireducens MLS10]
gi|297143190|gb|ADH99947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus selenitireducens MLS10]
Length = 371
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 55/253 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+D ++ DYVA+GHYA V H+ K K KDQTYFL+ LSQ QLR ++F L
Sbjct: 116 LDHAMTLGADYVATGHYAKVSHTPDGVKLLRGKDRNKDQTYFLNALSQDQLRHVLFPLGD 175
Query: 56 VLYPRLT----------------------------------IPMEGIILEAETGDFLEKH 81
+ PR+ +P + +E G+ H
Sbjct: 176 IEKPRVREIAEEAGLATAGKKDSTGICFIGERNFKEFLSEYLPAQPGNMETLDGEVKGTH 235
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YT+GQ Q LG+ +V++KD+ N++ V + ++ A + ++
Sbjct: 236 DGLMYYTLGQRQGLGIGGSGEPWFVIDKDLSRNVLLVGQGFHHPALYSEGLKADGVNWVA 295
Query: 141 GLPPEKISQLHSVFYNCSLTIEH-CEDGGEDIAV-------VQLSEDDQGLAAGQFAAFY 192
G P + ++C++ + +D G + V + E ++ + GQ FY
Sbjct: 296 GSAPAE-------RFHCTVKTRYRQQDRGATVTVEPDGSVTLMFDEAERAVTPGQAVVFY 348
Query: 193 QGRRCLGSGVILE 205
CLG G I E
Sbjct: 349 DDEICLGGGTINE 361
>gi|355785084|gb|EHH65935.1| hypothetical protein EGM_02808 [Macaca fascicularis]
Length = 422
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 108/279 (38%), Gaps = 82/279 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 64 ------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV 117
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV
Sbjct: 234 LQQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDGVKGNVFV 292
Query: 118 SRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCED 166
+ R L + ++ PP +K+ + H F + C LT+ +D
Sbjct: 293 APRRDHPALYRDLLRTSRVHWITEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QD 350
Query: 167 GGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
G + VQ L GQFA FY+G CLGSG IL
Sbjct: 351 GTVWVTAVQAV---HALTTGQFAVFYKGDECLGSGKILR 386
>gi|295425130|ref|ZP_06817835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus amylolyticus DSM 11664]
gi|295065189|gb|EFG56092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus amylolyticus DSM 11664]
Length = 375
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 100/254 (39%), Gaps = 59/254 (23%)
Query: 7 MEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA V + K KDQTYFLS LSQ Q++++IF L + P+
Sbjct: 119 LDADYIAMGHYAKTVKDENGIVHMMRPKDGNKDQTYFLSQLSQEQIKKVIFPLADLTKPQ 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P + + G + +H G +
Sbjct: 179 VREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGHVVGEHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD++ N + V + Y S A + +G
Sbjct: 239 YTIGQRQGLGLGSTKQSTDPWFVVGKDLKKNELIVEQGYDSKLLYATELKASDMSFFTGK 298
Query: 143 PPEKISQLHSVFYNCSLTIEH--CEDG-------GEDIAVVQLSEDDQGLAAGQFAAFYQ 193
P H V ++CS + C+ G E+ V E + + GQ Y
Sbjct: 299 PD------HDVEFHCSAKFRYRQCDVGVTVKYHAAENSVDVFFDEPARAVTPGQALVLYN 352
Query: 194 GRRCLGSGVILEAW 207
G CLG G I A+
Sbjct: 353 GEECLGGGFIDAAY 366
>gi|355563774|gb|EHH20336.1| hypothetical protein EGK_03168 [Macaca mulatta]
Length = 422
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 108/279 (38%), Gaps = 82/279 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 64 ------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV 117
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV
Sbjct: 234 LQQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDGVKGNVFV 292
Query: 118 SRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCED 166
+ R L + ++ PP +K+ + H F + C LT+ +D
Sbjct: 293 APRRDHPALYRDLLRTSRVHWITEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QD 350
Query: 167 GGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
G + VQ L GQFA FY+G CLGSG IL
Sbjct: 351 GTVWVTAVQAV---HALTTGQFAVFYKGDECLGSGKILR 386
>gi|227893351|ref|ZP_04011156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus ultunensis DSM 16047]
gi|227864766|gb|EEJ72187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus ultunensis DSM 16047]
Length = 375
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 98/254 (38%), Gaps = 47/254 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DY+A GHYA V + K KDQTYFLS LSQ Q++++IF L
Sbjct: 113 LDFAMDLDADYIAMGHYAKTVKDKNGIVHMMRPKDGNKDQTYFLSQLSQDQIQKVIFPLA 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
+ P++ +P + + G + +
Sbjct: 173 NLTKPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ Q LGL +VV KD++ N + V + Y S A +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASHLKASDM 292
Query: 137 KLLSGLPPEKISQLHSV---FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
+G P S + C + + ++ A V E + + GQ Y
Sbjct: 293 SFFTGQPDHDFEMHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYN 352
Query: 194 GRRCLGSGVILEAW 207
G CLG G I A+
Sbjct: 353 GEECLGGGNIDAAY 366
>gi|417998998|ref|ZP_12639211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei T71499]
gi|410539938|gb|EKQ14460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei T71499]
Length = 377
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA V VH AD KDQTYFLS LSQ QL++
Sbjct: 117 LDYADQLNADYIAMGHYAQVKTDENGIVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 171
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F + + P + E GI L A+ G +
Sbjct: 172 LFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 231
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 232 VEMGTHDGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 291
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + + F + +T+ H +DG A V + + GQ
Sbjct: 292 SASNLNWTTGQAPAEGTHMTAKFRYRQRDTGVTLHHHDDG---TATVDFDVPVRAITPGQ 348
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 349 AVVFYDGDECLGGGTIDAAY 368
>gi|16800615|ref|NP_470883.1| tRNA-specific 2-thiouridylase MnmA [Listeria innocua Clip11262]
gi|24638323|sp|Q92BK1.1|MNMA_LISIN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|16414020|emb|CAC96778.1| lin1547 [Listeria innocua Clip11262]
Length = 371
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGDMRTLNGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++NN++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDISFTTNSEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTFVCTAKFRYRQTDTKVTVNMREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|109094553|ref|XP_001111019.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
isoform 2 [Macaca mulatta]
Length = 422
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 108/279 (38%), Gaps = 82/279 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 64 ------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV 117
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV
Sbjct: 234 LQSYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDGVKGNVFV 292
Query: 118 SRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCED 166
+ R L + ++ PP +K+ + H F + C LT+ +D
Sbjct: 293 APRRDHPALYRDLLRTSRVHWITEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QD 350
Query: 167 GGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
G + VQ L GQFA FY+G CLGSG IL
Sbjct: 351 GTVWVTAVQAV---HALTTGQFAVFYKGDECLGSGKILR 386
>gi|303236987|ref|ZP_07323562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella disiens FB035-09AN]
gi|302482852|gb|EFL45872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella disiens FB035-09AN]
Length = 376
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 107/260 (41%), Gaps = 70/260 (26%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
++D +A+GHYA + +S D VKDQT FL+ + QL++ IF + Y
Sbjct: 121 DYDLIATGHYAQTKWIEGKKWLCTSPD-----PVKDQTDFLAQIYDWQLKKAIFPIGHYE 175
Query: 60 RLTI-------------------------------------PMEGIILEAETGDFLEKHR 82
+ + G ++E ETG + +H+
Sbjct: 176 KNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQVGDVIELETGKKIGQHK 235
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
G WF+TIGQ + LG + +VV+KD+ NN++ VS Y + F L L+
Sbjct: 236 GLWFHTIGQRKGLGFGGGPW-FVVKKDVANNVLLVSHGYDPQTAYKQEFKVHDLHWLTES 294
Query: 143 P---------------PEKISQLHSV-FYNCSLTIEHCEDGGEDI-AVVQLSEDDQGLAA 185
P P + H+ F+ L + E+GG++ A+V E G+A
Sbjct: 295 PKNEVVENSEKPNNWIPIRFKIRHTPEFHKGYLEMISVEEGGKETEAMVHSEEKIHGVAP 354
Query: 186 GQFAAFY--QGRRCLGSGVI 203
GQF Y + RC GS I
Sbjct: 355 GQFCVIYDKEHNRCFGSAEI 374
>gi|199598161|ref|ZP_03211583.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, PP-loop ATPase [Lactobacillus
rhamnosus HN001]
gi|199590922|gb|EDY99006.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, PP-loop ATPase [Lactobacillus
rhamnosus HN001]
Length = 377
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA VVH AD KDQTYFLS LSQ QL++
Sbjct: 117 LDYAEQLNADYIAMGHYAQVKTDEQGVVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 171
Query: 52 IFHL--VLYPRLTIPME-------------GIILEAE-------------------TGDF 77
+F + + P + E GI E T D
Sbjct: 172 MFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 231
Query: 78 LEK--HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+EK H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 232 VEKGTHDGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 291
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + F + +TI + +DG A V + + GQ
Sbjct: 292 SASNLNWTTGEAPVDGTHMTAKFRYRQRDTGVTIHYHDDG---TATVDFDVPVRAITPGQ 348
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 349 AVVFYDGEECLGGGTIDAAY 368
>gi|323344915|ref|ZP_08085139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oralis ATCC 33269]
gi|323094185|gb|EFZ36762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella oralis ATCC 33269]
Length = 359
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 99/242 (40%), Gaps = 54/242 (22%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
+D +A+GHYA VKDQT FL+ + QLR+ +F
Sbjct: 123 YDLIATGHYAQTEMIGGKKWLVTSPDPVKDQTDFLAQIYNWQLRKALFPIGHYMKDEVRE 182
Query: 54 -----HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
HL+ R G ++E ETG + HRG WF+T
Sbjct: 183 IAEHEHLINAKRKDSQGICFLGKINYNDYIRRFLGENPGDVIELETGRKIGMHRGLWFHT 242
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGLP 143
IGQ LG + Y ++KD+ N+++VS+ Y + D K H FH + +
Sbjct: 243 IGQRHGLGFGGGPW-YAIKKDVAQNVLYVSKGYEPQTAFQQDFKVHDFHFLTEPVDMKHV 301
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGSG 201
KI H+ Y+ +L E E V +E QG+A GQF Y Q RC GSG
Sbjct: 302 TFKIR--HTPEYHSALL----EKTAEGAYTVHSTEQIQGVAPGQFCVVYDEQHHRCFGSG 355
Query: 202 VI 203
I
Sbjct: 356 EI 357
>gi|340349805|ref|ZP_08672808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella nigrescens ATCC 33563]
gi|339610008|gb|EGQ14869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella nigrescens ATCC 33563]
Length = 376
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 104/267 (38%), Gaps = 70/267 (26%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
D ++D +A+GHYA + +S D VKDQT FL+ + QLR+ I
Sbjct: 114 FDEKCGHDYDLIATGHYAQTKWIDGKKWLCTSPD-----PVKDQTDFLAQIYDWQLRKAI 168
Query: 53 FHLVLYPRLTI-------------------------------------PMEGIILEAETG 75
F + Y + + G ++E ETG
Sbjct: 169 FPIGHYEKNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQAGDVVELETG 228
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+ +H+G WF+TIGQ + LG + +VV+KD+ N++FVS Y + F
Sbjct: 229 RKIGQHKGLWFHTIGQRKGLGFGGGPW-FVVKKDVAANVLFVSHGYDPETAYKKDFKVHG 287
Query: 136 LKLLSGLP-PEKISQLHSVFYNCSLT--IEH-------------CEDGGEDIAVVQLSED 179
L L+ P PE S + S+ I H D GE + SED
Sbjct: 288 LHWLTETPRPEAGSSDAETYRQISICFKIRHTPEFHKGYLELLPANDDGEPTEAIVHSED 347
Query: 180 D-QGLAAGQFAAFYQG--RRCLGSGVI 203
G+A GQF Y RC GS I
Sbjct: 348 KIHGVAPGQFCVIYDKDHNRCFGSAEI 374
>gi|301774935|ref|XP_002922890.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Ailuropoda melanoleuca]
Length = 477
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 110/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S KDQ
Sbjct: 172 AVDNLGADAVATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQ 231
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR +F H VL + ++
Sbjct: 232 TFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFI 291
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++ L + YVVEKD VFV+
Sbjct: 292 LQYLQPRPGKFISIEDSKVLGTHKGWFLYTLGQRAKISGLQEPW-YVVEKDGTKGDVFVA 350
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 351 PRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 408
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ + LA GQFA FY+G CLGSG IL
Sbjct: 409 TVWVTAVKAV---RALAPGQFAVFYKGDECLGSGKILR 443
>gi|406670605|ref|ZP_11077850.1| tRNA-specific 2-thiouridylase mnmA [Facklamia hominis CCUG 36813]
gi|405582121|gb|EKB56127.1| tRNA-specific 2-thiouridylase mnmA [Facklamia hominis CCUG 36813]
Length = 365
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 100/260 (38%), Gaps = 53/260 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
MD + DY+A GHYA V H + S KDQTYFLS LSQ QL R +F
Sbjct: 101 MDYAMGLGADYIAMGHYAQVECDDQGHVHLLRGADSNKDQTYFLSQLSQEQLARSLFPIG 160
Query: 54 HLVLYPRLTIPMEGIILEAET---------------------------------GDFLEK 80
HL I + + A G + +
Sbjct: 161 HLEKKQVREIARDAGLATANKKDSTGVCFIGERNFNEFLSNYLPNKPGKMKTIDGRVMGE 220
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H G +YTIGQ LG+ +VV KD+ ++V + ++ + A
Sbjct: 221 HMGLMYYTIGQRHGLGIGGSAGSDGSNEPWFVVGKDMSTQTLYVGQGFHHENLYADDLIA 280
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ PP + + F + +T+ EDG + A V+ + + + GQ
Sbjct: 281 SQVSFTQKTPPSSSFECTAKFRYRQKDVPVTVHLLEDGQK--AKVEFHQPARAVTPGQAV 338
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FYQGR CLG G+I + D
Sbjct: 339 VFYQGRECLGGGLIDAVYKD 358
>gi|315038064|ref|YP_004031632.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
1112]
gi|325956515|ref|YP_004291927.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC]
gi|385817406|ref|YP_005853796.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus
GRL1118]
gi|312276197|gb|ADQ58837.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
1112]
gi|325333080|gb|ADZ06988.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC]
gi|327183344|gb|AEA31791.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus
GRL1118]
Length = 375
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 98/248 (39%), Gaps = 47/248 (18%)
Query: 7 MEFDYVASGHYANVVHSS--ADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA V + H +P KDQTYFLS L+Q Q++++IF L + P+
Sbjct: 119 LDADYIAMGHYAKTVKDANGVTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLTKPQ 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P + + G + +H G +
Sbjct: 179 VREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGEHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD++ N + V + Y S A + +G
Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMSFFTGK 298
Query: 143 PPEKISQLHSV---FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P S + C + + ++ A V E + + GQ Y G CLG
Sbjct: 299 PDHDFEMHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYNGEECLG 358
Query: 200 SGVILEAW 207
G I A+
Sbjct: 359 GGNIDAAY 366
>gi|351710308|gb|EHB13227.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Heterocephalus
glaber]
Length = 433
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 110/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAVATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNPVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIFHL-------------------VLYPRLTI-------------- 63
T+FLS +SQ LRR IF L VL + ++
Sbjct: 174 TFFLSQVSQEALRRTIFPLGGLTKDFVKKIAAENGLQHVLQKKESMGICFIGKRNFEHFI 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++ L + YVV+KD V ++
Sbjct: 234 LQYLEPRPGKFISIEDNTLLGTHKGWFLYTLGQRAKISGLSKPW-YVVDKDGTKGDVLLA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP EK+ + H F + C LT+ +DG
Sbjct: 293 PGPDHPALYRDLLRTNRVHWITEEPPATLVREKMMECHFRFCHQMAQVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ +GLA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVKAV---RGLAPGQFAVFYKGDECLGSGKILR 385
>gi|261405437|ref|YP_003241678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus sp. Y412MC10]
gi|261281900|gb|ACX63871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus sp. Y412MC10]
Length = 375
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 107/246 (43%), Gaps = 53/246 (21%)
Query: 10 DYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA V+ ++ S KDQTYFL+ LSQ QL + +F + P+ +
Sbjct: 129 DYVATGHYARVIEEDGQYRLLRGVDSNKDQTYFLNALSQEQLAKAMFPIGHLPKPEVRRL 188
Query: 64 --------------------------PMEGIILEAETGDFLE--------KHRGFWFYTI 89
G L A++GD ++ +H G +YT+
Sbjct: 189 AEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLPAQSGDMVDIVTGEVKGRHDGLMYYTL 248
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG---LP 143
GQ Q LG+ +V +KD+ NNI++V + + L +G + ++G +P
Sbjct: 249 GQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVASG-INWIAGQDAMP 307
Query: 144 PEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+ + Y + +TI EDG +A ++ + + GQ FYQG CLG
Sbjct: 308 KDAYTCTAKFRYRQPDQEVTITPREDGTVHVA---FAKPQKAITPGQAVVFYQGDECLGG 364
Query: 201 GVILEA 206
G I A
Sbjct: 365 GTIETA 370
>gi|253683532|ref|NP_001156660.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Bos taurus]
gi|296486862|tpg|DAA28975.1| TPA: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
[Bos taurus]
Length = 417
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 109/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAVATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS + Q LRR +F H VL + ++
Sbjct: 174 TFFLSQVPQEALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFI 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ +G L + YVV+KD V V+
Sbjct: 234 LEYLQPRPGRFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVDKDGAKGDVLVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L G + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVKAV---RALAPGQFAVFYKGDECLGSGKILR 385
>gi|329926781|ref|ZP_08281189.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus sp. HGF5]
gi|328938981|gb|EGG35349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus sp. HGF5]
Length = 389
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 107/246 (43%), Gaps = 53/246 (21%)
Query: 10 DYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA V+ ++ S KDQTYFL+ LSQ QL + +F + P+ +
Sbjct: 143 DYVATGHYARVIEEDGQYRLLRGVDSNKDQTYFLNALSQEQLSKAMFPIGHLPKPEVRRL 202
Query: 64 --------------------------PMEGIILEAETGDFLE--------KHRGFWFYTI 89
G L A++GD ++ +H G +YT+
Sbjct: 203 AEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLPAQSGDMVDIVTGEVKGRHDGLMYYTL 262
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG---LP 143
GQ Q LG+ +V +KD+ NNI++V + + L +G + ++G +P
Sbjct: 263 GQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVASG-MNWIAGQDAMP 321
Query: 144 PEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+ + Y + +TI EDG +A ++ + + GQ FYQG CLG
Sbjct: 322 KDAYACTAKFRYRQPDQEVTITPREDGTVHVA---FAKPQKAITPGQAVVFYQGDDCLGG 378
Query: 201 GVILEA 206
G I A
Sbjct: 379 GTIETA 384
>gi|281348930|gb|EFB24514.1| hypothetical protein PANDA_011920 [Ailuropoda melanoleuca]
Length = 392
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 110/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S KDQ
Sbjct: 87 AVDNLGADAVATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQ 146
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR +F H VL + ++
Sbjct: 147 TFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFI 206
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++ L + YVVEKD VFV+
Sbjct: 207 LQYLQPRPGKFISIEDSKVLGTHKGWFLYTLGQRAKISGLQEPW-YVVEKDGTKGDVFVA 265
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 266 PRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 323
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ + LA GQFA FY+G CLGSG IL
Sbjct: 324 TVWVTAVKAV---RALAPGQFAVFYKGDECLGSGKILR 358
>gi|423100594|ref|ZP_17088301.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua ATCC 33091]
gi|370792818|gb|EHN60661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua ATCC 33091]
Length = 358
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 106 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 165
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 166 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGDMRTLDGEVLGKHDGLMY 225
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++NN++FV + ++ A + +
Sbjct: 226 YTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDISFTTNSEKP 285
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 286 KTFVCTAKFRYRQTDTKVTVNMREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 342
Query: 202 VILEAW 207
I W
Sbjct: 343 TIDTVW 348
>gi|194226979|ref|XP_001488715.2| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Equus caballus]
Length = 527
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 110/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S KDQ
Sbjct: 220 ALDNLGADAVATGHYARTSLEDDEVFQQKHVKRPEGLFRNRFEVRNAVKLLQAADSFKDQ 279
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR +F H VL + ++
Sbjct: 280 TFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNFENFI 339
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++G L + YVVEKD VFV+
Sbjct: 340 LQYLQPRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPW-YVVEKDGAKGDVFVA 398
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 399 PQTDHPALYRDLLRTSRVHWIAEEPPATLVRDKMMECHFRFRHQMALVPCVLTLN--QDG 456
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ + L GQFA FY+G CLGSG IL
Sbjct: 457 TVWVTAVKPV---RALTLGQFAVFYKGDECLGSGKILR 491
>gi|440890011|gb|ELR44747.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Bos grunniens mutus]
Length = 417
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 109/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S KDQ
Sbjct: 114 AVDNLGADAVATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS + Q LRR +F H VL + ++
Sbjct: 174 TFFLSQVPQEALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFI 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ +G L + YVV+KD V V+
Sbjct: 234 LEYLQPRPGRFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVDKDGAKGDVLVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L G + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVKAV---RALAPGQFAVFYKGDECLGSGKILR 385
>gi|312875501|ref|ZP_07735504.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2053A-b]
gi|325912819|ref|ZP_08175197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners UPII 60-B]
gi|311089012|gb|EFQ47453.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2053A-b]
gi|325477812|gb|EGC80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners UPII 60-B]
Length = 375
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 104/256 (40%), Gaps = 51/256 (19%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DY+A GHYA V + H +P KDQTYFLS ++Q QL++ IF L
Sbjct: 113 LDFAMKLDADYIAMGHYAKTVTDENGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLA 172
Query: 57 LYPRLTIPM---------------EGIILEAE---------------------TGDFLEK 80
+ + M GI E G + K
Sbjct: 173 DLSKPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTSDGRIVGK 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ LGL +VV K+++ N + V + Y S A +
Sbjct: 233 HSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEV 292
Query: 137 KLLSGLPPEKISQLHSVFY-----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+GLP + + + + ++T+ + +D + V+ E + + GQ F
Sbjct: 293 SFFTGLPSNDTTIHCTAKFRYRQPDVAVTVNYNKD--NNTVHVEFDELARAVTPGQAIVF 350
Query: 192 YQGRRCLGSGVILEAW 207
Y G CLG +I +A+
Sbjct: 351 YDGEECLGGAIIDKAY 366
>gi|344940388|ref|ZP_08779676.1| tRNA-specific 2-thiouridylase mnmA [Methylobacter tundripaludum
SV96]
gi|344261580|gb|EGW21851.1| tRNA-specific 2-thiouridylase mnmA [Methylobacter tundripaludum
SV96]
Length = 363
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 96/246 (39%), Gaps = 45/246 (18%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---HL- 55
AI + +Y+A+GHYA V ++ K K+Q+YFL L Q QL R +F HL
Sbjct: 112 AIEDLGAEYIATGHYARVSEQDCEYFLLKGLDPNKEQSYFLYTLGQKQLSRTLFPIGHLH 171
Query: 56 --------------------------------VLYPRLTIPMEGIILEAETGDFLEKHRG 83
+ + +P + + G + KH G
Sbjct: 172 KPEIRAMADKAGFANSRKKDSTGICFIGERKFTEFLQRYLPTQPGEMRTPQGQHIGKHHG 231
Query: 84 FWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
+YT+GQ Q LG+ + YV+EKD+ENNI+ V + + + A L
Sbjct: 232 LMYYTLGQRQGLGIGGVKNAPDEPWYVLEKDLENNILIVGQGHDHPLMLHNTLEASQLDW 291
Query: 139 LSGLPPEK-ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
S P K I Y + + E G D + + + GQ FY G C
Sbjct: 292 CSNRPLTKTIRCTAKTRYRQADQLCSLEPIGNDRCKAVFDQPQRAITPGQSVVFYDGEIC 351
Query: 198 LGSGVI 203
LG G+I
Sbjct: 352 LGGGII 357
>gi|253574914|ref|ZP_04852254.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845960|gb|EES73968.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14]
Length = 378
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 104/248 (41%), Gaps = 62/248 (25%)
Query: 10 DYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA VV + +K S KDQTYFL+ L+Q QL + +F + P+ +
Sbjct: 124 DYVATGHYARVVEENKTYKLLRGVDSNKDQTYFLNALNQEQLSKAMFPIGHLPKPEVRRI 183
Query: 64 ----------------------------------PMEGIILEAETGDFLEKHRGFWFYTI 89
G +++ TG+ +H G +YT+
Sbjct: 184 AEEAGLYTAKKKDSTGVCFIGERNFKEFLSNYLPAQSGDMIDIVTGEVKGRHDGLMYYTL 243
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFH-----------AGS 135
GQ Q LG+ +V +KD+E NI++V + DK L+ AG+
Sbjct: 244 GQRQGLGIGGSGTGEPWFVADKDLERNILYVVQG----DKHPSLYSTSLIASGVNWIAGA 299
Query: 136 LKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
K+ G P + ++ + +T+ DG +A E + + GQ FYQG
Sbjct: 300 DKMPEG-PYKCTAKFRYRQPDQGVTLTKQPDGTVHVA---FDEPQKAITPGQAVVFYQGE 355
Query: 196 RCLGSGVI 203
CLG G I
Sbjct: 356 ECLGGGTI 363
>gi|242212937|ref|XP_002472299.1| predicted protein [Postia placenta Mad-698-R]
gi|220728576|gb|EED82467.1| predicted protein [Postia placenta Mad-698-R]
Length = 356
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 100/253 (39%), Gaps = 56/253 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPS--VKDQTYFLSHLSQAQLRRLIFHLVLY 58
MD ++ + +VA+GHYA+ +P KDQTY+LS + +A L R IF L +
Sbjct: 104 MDQLTGDDV-WVATGHYADKSWFPCKSLRRPRDRTKDQTYYLSAIPEASLARTIFPLAPF 162
Query: 59 PRLTI--------------------------------------PMEGIILEAETGDFLEK 80
+ + P +G I++ +TG L
Sbjct: 163 AKTEVRAMAKKWELPTAQRAESMGICFVGEKRRFDGFLSQYITPRQGPIIDLQTGKQLGT 222
Query: 81 HRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV-SRNYYSFDKKRHLFHAGSLKLL 139
H G W YTIGQ+ L + +V +KD E N ++V + + R L + +
Sbjct: 223 HTGLWTYTIGQNARLPGM-PERMFVAKKDAERNEIYVVPSSTHPALYSRSLIASAWQWIW 281
Query: 140 SGLPPEKIS---------QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
PP I Q + TI+ G I + E Q +A GQ AA
Sbjct: 282 RDHPPGGIDDELGFHGRVQYRHRMLDAPATIQR---RGHTIHIT-FEEPQQSVAPGQIAA 337
Query: 191 FYQGRRCLGSGVI 203
+ G CLGSG+I
Sbjct: 338 VWDGDWCLGSGII 350
>gi|422413000|ref|ZP_16489959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua FSL S4-378]
gi|313618826|gb|EFR90711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria innocua FSL S4-378]
Length = 371
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGDMRTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++NN++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDISFTTNSEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTFVCTAKFRYRQTDTKVTVNLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|452943560|ref|YP_007499725.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Hydrogenobaculum sp. HO]
gi|452881978|gb|AGG14682.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Hydrogenobaculum sp. HO]
Length = 342
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 103/236 (43%), Gaps = 47/236 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL---------V 56
+ + D++A+GHY V+ K + KDQ+YF++ + + L L+F +
Sbjct: 115 TADIDFLATGHY--VIKEEGKIK-RAKEKDQSYFMALIPKQSLDYLMFPVGYMTKQEIRE 171
Query: 57 LYPRLTIPM----------------------------EGIILEAETGDFLEKHRGFWFYT 88
+ ++ +P+ +G I+ T L KH+G YT
Sbjct: 172 IAKKINLPVANKIESQDVCFLKGMDLEDYLSQFIDMTQGDIVHIATQKKLGKHKGIHRYT 231
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ LG+ Y YVVEKDIENNI++V Y F L L+ EK +
Sbjct: 232 IGQRHGLGVSYHKPLYVVEKDIENNILYVGEKEYLFKDTITLKDYNKLEDF-----EKDN 286
Query: 149 QLHSVFYNCS-LTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ YN + I+H E+ +D+ V L E +A GQ A Y G LG G+I
Sbjct: 287 MYIQIRYNSKPIPIKHIEEDKDDLRVF-LKEPATQVAKGQVGAIYFGDILLGGGII 341
>gi|423077679|ref|ZP_17066371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus ATCC 21052]
gi|357553393|gb|EHJ35143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus rhamnosus ATCC 21052]
Length = 377
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 106/260 (40%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA VVH AD KDQTYFLS LSQ QL++
Sbjct: 117 LDYAEQLNADYIAMGHYAQVKTDERGVVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 171
Query: 52 IFHL--VLYPRLTIPME-------------GIILEAE-------------------TGDF 77
+F + + P + E GI E T D
Sbjct: 172 MFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 231
Query: 78 LEK--HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+EK H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 232 VEKGTHDGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 291
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A + +G P + + + F + +TI + +DG A V + + GQ
Sbjct: 292 SASNFNWTTGEAPADGTHMTAKFRYRQRDTGVTIHYHDDG---TATVDFDVPVRAITPGQ 348
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 349 AVVFYDGEECLGGGTIDAAY 368
>gi|418070523|ref|ZP_12707798.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus R0011]
gi|357539943|gb|EHJ23960.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus R0011]
Length = 372
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 106/260 (40%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA VVH AD KDQTYFLS LSQ QL++
Sbjct: 112 LDYAEQLNADYIAMGHYAQVKTDERGVVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 166
Query: 52 IFHL--VLYPRLTIPME-------------GIILEAE-------------------TGDF 77
+F + + P + E GI E T D
Sbjct: 167 MFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 226
Query: 78 LEK--HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+EK H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 227 VEKGTHDGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 286
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A + +G P + + + F + +TI + +DG A V + + GQ
Sbjct: 287 SASNFNWTTGEAPADGTHMTAKFRYRQRDTGVTIHYHDDG---TATVDFDVPVRAITPGQ 343
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 344 AVVFYDGEECLGGGTIDAAY 363
>gi|309807240|ref|ZP_07701212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 03V1-b]
gi|308166378|gb|EFO68585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 03V1-b]
Length = 375
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 104/256 (40%), Gaps = 51/256 (19%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DY+A GHYA V + H +P KDQTYFLS ++Q QL++ IF L
Sbjct: 113 LDFAMKLDADYIAMGHYAKTVTDENGIVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLA 172
Query: 57 LYPRLTIPM---------------EGIILEAE---------------------TGDFLEK 80
+ + M GI E G + K
Sbjct: 173 DLSKPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTSDGRIVGK 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ LGL +VV K+++ N + V + Y S A +
Sbjct: 233 HSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEV 292
Query: 137 KLLSGLPPEKISQLHSVFY-----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+GLP + + + + ++T+ + +D + V+ E + + GQ F
Sbjct: 293 SFFTGLPSNDTTIHCTAKFRYRQPDVAVTVNYNKD--NNTVHVEFDELARAVTPGQAIVF 350
Query: 192 YQGRRCLGSGVILEAW 207
Y G CLG +I +A+
Sbjct: 351 YDGEECLGGAIIDKAY 366
>gi|415886865|ref|ZP_11548608.1| tRNA-specific 2-thiouridylase MnmA [Bacillus methanolicus MGA3]
gi|387585516|gb|EIJ77841.1| tRNA-specific 2-thiouridylase MnmA [Bacillus methanolicus MGA3]
Length = 370
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 43/246 (17%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+D S++ DYVA+GHYA + + + + K S KDQ+YFLS L+ QL ++IF L
Sbjct: 111 IDFALSLDADYVATGHYARINRKNGEVTLLRGKDSNKDQSYFLSQLTGEQLSKVIFPLGE 170
Query: 56 ----------------------------------VLYPRLTIPMEGIILEAETGDFLEKH 81
+ + +P + + + G+ L +H
Sbjct: 171 LTKDEVRKIANEINLSTANKKDSTGICFIGERNFKSFLKNFLPAQPGDIRSIDGEVLGRH 230
Query: 82 RGFWFYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
G +YTIGQ + LG+ +VV+KD+ENNI+ V++ + A ++
Sbjct: 231 DGLMYYTIGQRKGLGIGGKGAPEPWFVVDKDLENNILIVAQGKDHPALYSNGIIAANISF 290
Query: 139 LSG-LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
++G P S Y + A+V+ + + + GQ A FY C
Sbjct: 291 INGDYSPRTFSCTAKFRYRQEDQKVKVHVRTDKTALVEFEQPIKAVTPGQVAVFYDQDVC 350
Query: 198 LGSGVI 203
LGSG+I
Sbjct: 351 LGSGII 356
>gi|188994230|ref|YP_001928482.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis ATCC
33277]
gi|229486420|sp|B2RHP0.1|MNMA_PORG3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|188593910|dbj|BAG32885.1| putative tRNA 5-methylaminomethyl-2-thiouridylate
5-methyltransferase [Porphyromonas gingivalis ATCC
33277]
Length = 361
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 103/248 (41%), Gaps = 50/248 (20%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA + K VKDQT FL+ ++ AQ+ +L+F HL+
Sbjct: 114 QFDRIATGHYATTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG + +H+G+WF+
Sbjct: 174 AIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI+ NI+ VSR Y + + ++ E
Sbjct: 234 TIGQRKGLGLSGGPW-FVVKKDIKRNIILVSRGYDPDTQYGKTIEMETFDFITEDAYEAG 292
Query: 148 SQLHSVFYNCSLTIEHCED-------GGEDIAVVQLSEDDQGLAAGQFAAFYQGRR--CL 198
+ I H + GE ++ E QG+A GQ+ Y C
Sbjct: 293 YWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIYDEDHHLCY 352
Query: 199 GSGVILEA 206
GSG+I +
Sbjct: 353 GSGMITKG 360
>gi|16803552|ref|NP_465037.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes EGD-e]
gi|47097209|ref|ZP_00234773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes str. 1/2a F6854]
gi|254828254|ref|ZP_05232941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL N3-165]
gi|254912186|ref|ZP_05262198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes J2818]
gi|254936514|ref|ZP_05268211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes F6900]
gi|284801902|ref|YP_003413767.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578]
gi|284995044|ref|YP_003416812.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923]
gi|386047164|ref|YP_005965496.1| tRNA methyl transferase [Listeria monocytogenes J0161]
gi|386050488|ref|YP_005968479.1| tRNA-specific 2-thiouridylase mnmA [Listeria monocytogenes FSL
R2-561]
gi|386053765|ref|YP_005971323.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes Finland 1998]
gi|404284004|ref|YP_006684901.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2372]
gi|405758560|ref|YP_006687836.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2479]
gi|24638317|sp|Q8Y714.1|MNMA_LISMO RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|16410941|emb|CAC99590.1| lmo1512 [Listeria monocytogenes EGD-e]
gi|47014423|gb|EAL05392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes str. 1/2a F6854]
gi|258600642|gb|EEW13967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL N3-165]
gi|258609108|gb|EEW21716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes F6900]
gi|284057464|gb|ADB68405.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578]
gi|284060511|gb|ADB71450.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923]
gi|293590159|gb|EFF98493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes J2818]
gi|345534155|gb|AEO03596.1| tRNA methyl transferase [Listeria monocytogenes J0161]
gi|346424334|gb|AEO25859.1| tRNA-specific 2-thiouridylase mnmA [Listeria monocytogenes FSL
R2-561]
gi|346646416|gb|AEO39041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes Finland 1998]
gi|404233506|emb|CBY54909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2372]
gi|404236442|emb|CBY57844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2479]
gi|441471205|emb|CCQ20960.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes]
gi|441474334|emb|CCQ24088.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes N53-1]
Length = 371
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDVCLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|301605226|ref|XP_002932238.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Xenopus
(Silurana) tropicalis]
Length = 418
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 112/277 (40%), Gaps = 81/277 (29%)
Query: 3 AISSMEFDYVASGHYAN--------------------------VVHSSADHKDKPSVKDQ 36
AI + D +A+GHYA + H + + +KDQ
Sbjct: 114 AIDILGADAIATGHYARTSLEDEEIFQQKYIKSPQNLFRNRFEIRHDAKLLQAADRIKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTIPM--------EGII 69
T+FLS +SQ LR+ IF H VL + ++ + E I
Sbjct: 174 TFFLSQISQYALRKTIFPLGELTKDFVKKIAAEAGFHHVLKRKESMGICFIGERNFENFI 233
Query: 70 LE-----------AETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
LE AE G + +H+G++ +T+GQ +G + +VV+KD+ V+V+
Sbjct: 234 LEYLEAQPGNFVSAEDGKIMGRHKGWFLFTLGQRARIGGQRDAW-FVVDKDVTTGNVYVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPPE-----KISQLHSVFYN------CSLTIEHCEDG 167
R L + LS PP+ K+ + H F + C LT+ +DG
Sbjct: 293 PTTDHPALYRDLLRTDRMHWLSEDPPDELVKNKMMECHFRFQHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
L + + L GQFA FY+G CLGSG IL
Sbjct: 351 ---TVWATLVKPIRALTPGQFAVFYKGEECLGSGKIL 384
>gi|282880951|ref|ZP_06289642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella timonensis CRIS 5C-B1]
gi|281305174|gb|EFA97243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella timonensis CRIS 5C-B1]
Length = 358
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 102/247 (41%), Gaps = 62/247 (25%)
Query: 8 EFDYVASGHYAN--VVHSSADHKDKPS-VKDQTYFLSHLSQAQLRRLIF----------- 53
++D +A+GHYA ++ P VKDQT FL+ + QL++ +F
Sbjct: 121 QYDLIATGHYAQTEIIEGRKWLTTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQKGEVR 180
Query: 54 ------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
HL+ R G ++E ETG + +HRG WF+
Sbjct: 181 KIAEREHLINAKRKDSQGICFLGQINYNEYLRRYIGENPGKVIELETGKQIGEHRGLWFH 240
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGL 142
TIGQ LG + +VV+KD+ NN++++S+ Y Y D K H FH ++ +
Sbjct: 241 TIGQRHGLGFGGGPW-FVVKKDVANNVLYISKGYDPQTAYQKDFKIHDFHFLTMPV---- 295
Query: 143 PPEKISQLHSVFYNCSLTIEH----CEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRR 196
+H V + T E E D V G+A GQF Y Q
Sbjct: 296 ------DMHHVTFKIRHTPEFHSGIIEQTAPDSYTVHAETAIHGVAPGQFCVVYDEQHHC 349
Query: 197 CLGSGVI 203
C+GSG I
Sbjct: 350 CIGSGEI 356
>gi|381204728|ref|ZP_09911799.1| tRNA-specific 2-thiouridylase MnmA [SAR324 cluster bacterium
JCVI-SC AAA005]
Length = 367
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 101/245 (41%), Gaps = 58/245 (23%)
Query: 7 MEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
++ +++A+GHYA ++ + H+ + KDQTYFL + QL+RLIF L + +
Sbjct: 119 LDCEFLATGHYAKILKNITGKIELHRPRDRKKDQTYFLHGIPYGQLQRLIFPLQDHIKSE 178
Query: 63 I----------------------------------------PMEGIILEAETGDFLEKHR 82
+ P E I LE G L KHR
Sbjct: 179 VRKIAEKLDLDSASKPDSQEICFIDKDYRQFLKAQNRITENPGEFINLE---GKVLGKHR 235
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDI-ENNIVFVSRNYYSFDKKRHLFHAGSLK-LLS 140
G FYT+GQ + LG+ YVV D+ EN +V R F++ H + L+
Sbjct: 236 GIPFYTVGQRRGLGISDRTPWYVVAIDVNENRVVLGKRENLRFNE----IHVKDINWLIE 291
Query: 141 GL--PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
L P E + QL C + D A + L + + AGQ A FY+G R L
Sbjct: 292 PLEEPREIVVQLRYSHRGCEAMLTPL---ATDQATLHLPFSELAVTAGQAAVFYEGDRVL 348
Query: 199 GSGVI 203
G G I
Sbjct: 349 GGGWI 353
>gi|34540110|ref|NP_904589.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis W83]
gi|419970915|ref|ZP_14486385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas gingivalis W50]
gi|81416613|sp|Q7MAW9.1|MNMA_PORGI RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|34396421|gb|AAQ65488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas gingivalis W83]
gi|392609636|gb|EIW92440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Porphyromonas gingivalis W50]
Length = 361
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 103/248 (41%), Gaps = 50/248 (20%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA + K VKDQT FL+ ++ AQ+ +L+F HL+
Sbjct: 114 QFDRIATGHYATTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG + +H+G+WF+
Sbjct: 174 AIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI+ NI+ VSR Y + + ++ E
Sbjct: 234 TIGQRKGLGLSGGPW-FVVKKDIKRNIILVSRGYDPDAQYGKTIEMETFDFITEDAYEAG 292
Query: 148 SQLHSVFYNCSLTIEHCED-------GGEDIAVVQLSEDDQGLAAGQFAAFYQGRR--CL 198
+ I H + GE ++ E QG+A GQ+ Y C
Sbjct: 293 YWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIYDEDHHLCY 352
Query: 199 GSGVILEA 206
GSG+I +
Sbjct: 353 GSGMITKG 360
>gi|300361472|ref|ZP_07057649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus gasseri JV-V03]
gi|300354091|gb|EFJ69962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus gasseri JV-V03]
Length = 383
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 104/269 (38%), Gaps = 71/269 (26%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A GHYA +VH + K KDQTYFLS LSQ QL+++IF
Sbjct: 121 LDFAMDLDADYIAMGHYAATKVDENGIVHM---MRPKDGNKDQTYFLSQLSQDQLKKVIF 177
Query: 54 HL--VLYPRLT----------------------------------IPMEGIILEAETGDF 77
L + P++ +P + + G
Sbjct: 178 PLANLTKPQVREIAIAAGLATAKKKDSTGICFIGERNFRKFLSEFLPAQSGKMVTPDGKV 237
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ +H G +YTIGQ LGL +VV KD++ N + V + Y S A
Sbjct: 238 VGEHAGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDA 297
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQ 181
+ +GLP H + C+ + + D+ V V+ E +
Sbjct: 298 SGVSFFTGLPD------HDIDLKCTAKFRYRQ---PDVGVTMHYHAKDNTVHVEFDEPAR 348
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDDQ 210
+ GQ FY G CLG I A+ ++
Sbjct: 349 AVTPGQAIVFYNGEECLGGATIDRAYQNE 377
>gi|146328716|ref|YP_001209536.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Dichelobacter nodosus VCS1703A]
gi|205816915|sp|A5EVB4.1|MNMA_DICNV RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|146232186|gb|ABQ13164.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Dichelobacter nodosus VCS1703A]
Length = 376
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 64/248 (25%)
Query: 10 DYVASGHYANVV----HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL---------- 55
D++A+GHYA + H +A K + KDQ+YFL ++ AQL + IF L
Sbjct: 127 DFLATGHYAQRLQSDNHEAALFKGVDAQKDQSYFLHQITPAQLNKAIFPLGGLQKKQVRA 186
Query: 56 --------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+ + +P + +++ G+ + +H G +YTI
Sbjct: 187 IARERGLTTFDKKDSTGICFIGERPFRAFLQQYLPAQKGLMKTPNGEIVGEHMGLMYYTI 246
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
GQ Q LG+ I YV+EKD+ NN++ V + + R L AG L L+ P
Sbjct: 247 GQRQGLGIGGIAGASEEPWYVLEKDLSNNVLIVGQGDHPLLYHRVLI-AGQLSWLNEAP- 304
Query: 145 EKISQLHSVFYNC---------SLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ FY+ +++ DG + QL + + GQ+A Y G
Sbjct: 305 -----IAGRFYHAKTRYRQSDQKCRVDYAADGRLQLTFEQLQ---RAITLGQYAVIYDGE 356
Query: 196 RCLGSGVI 203
RCLG GVI
Sbjct: 357 RCLGGGVI 364
>gi|421890771|ref|ZP_16321618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum K60-1]
gi|378963884|emb|CCF98366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum K60-1]
Length = 370
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 101/256 (39%), Gaps = 61/256 (23%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + + DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLKAFDH-----TKDQSYFLHRLNQAQLSRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTRVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPEGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KDI N ++V + + H
Sbjct: 225 TIGQHIGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDIAANTLYVVQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
HA L ++G PP + + L + + T+ DG +A +E + GQ
Sbjct: 285 HADDLSWVAGHPPAEGTHLAAKTRYRQADAPCTVARATDGALALA---FAEAQWAVTPGQ 341
Query: 188 FAAFYQGRRCLGSGVI 203
A Y G CLG G+I
Sbjct: 342 SAVLYDGEVCLGGGII 357
>gi|256826638|ref|YP_003150597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cryptobacterium curtum DSM 15641]
gi|256582781|gb|ACU93915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cryptobacterium curtum DSM 15641]
Length = 394
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 100/247 (40%), Gaps = 54/247 (21%)
Query: 2 DAISSMEFDYVASGHYANVVHSSADH-KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60
DA FDY+A+GHYA H + + KDQTYFL +S + IF L +
Sbjct: 156 DAAQDDGFDYIATGHYARASHDPVRLLRAADTHKDQTYFLYRMSSDAVAHTIFPLGGLLK 215
Query: 61 LTI-------------------------------------PMEGIILEAETGDFLEKHRG 83
+ P G I++ +TG+ + H G
Sbjct: 216 TQVRAAAEQRNLSTAHKADSQGICFVGEAGICDFLSLYVHPQPGPIIDDDTGETVGYHDG 275
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP 143
F+TIGQ LG+ VV KD+++NI++V + + L ++ ++ +P
Sbjct: 276 AIFFTIGQRHGLGIGGGRRYRVVRKDMDHNILYVHDGPLA-PVQDSLLELDRVRWIADVP 334
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAV-------VQLSEDDQGLAAGQFAAFYQGRR 196
P++ + C + H E + VQL D +A+GQ Y+G+
Sbjct: 335 PQEGA--------CEVRTHHGEKLLAATLLATATTATVQLEADHDAVASGQSVVIYRGQE 386
Query: 197 CLGSGVI 203
CLG G++
Sbjct: 387 CLGGGIV 393
>gi|167756778|ref|ZP_02428905.1| hypothetical protein CLORAM_02327 [Clostridium ramosum DSM 1402]
gi|237734496|ref|ZP_04564977.1| tRNA-specific 2-thiouridylase mnmA [Mollicutes bacterium D7]
gi|365832496|ref|ZP_09374029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Coprobacillus sp. 3_3_56FAA]
gi|167702953|gb|EDS17532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium ramosum DSM 1402]
gi|229382316|gb|EEO32407.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. D7]
gi|365260441|gb|EHM90398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Coprobacillus sp. 3_3_56FAA]
Length = 377
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 112/261 (42%), Gaps = 52/261 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVH-SSADH---KDKPSVKDQTYFL---------------S 41
+D ++ DY+A+GHYA V H AD K + KDQTYFL
Sbjct: 119 LDFAKTLNADYIATGHYAQVKHYQGADSVMLKGLDNNKDQTYFLCQLNQQQLQNSLFPLG 178
Query: 42 HLSQAQLRRLIFHLVL---------------------YPRLTIPME-GIILEAETGDFLE 79
+ + ++RR+ L L + + IP + G +++ ETG+ +
Sbjct: 179 EIDKTEVRRIARELNLPVADKKDSTGICFIGERDFKEFLQNYIPAQAGKMVDIETGNVIG 238
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK- 137
H G +YTIGQ + LG+ +VV KD + N++++ + D+K L+ G+L
Sbjct: 239 DHSGIMYYTIGQRKGLGIGGPGDAWFVVGKDYDKNVLYICQG----DQKDWLYSTGALIT 294
Query: 138 ----LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
+ S P +KI+ Y E ED + + + + GQ A FY
Sbjct: 295 DVNWIASTKPIDKIACNAKFRYRQPDNPIQLEFIDEDTVYLTFDKPIKAVTPGQAAVFYD 354
Query: 194 GRRCLGSGVILEAWDDQGFPV 214
G CLG G I + D G P+
Sbjct: 355 GDICLGGGTIETVYKD-GQPI 374
>gi|449481205|ref|XP_002187736.2| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Taeniopygia guttata]
Length = 400
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 111/277 (40%), Gaps = 81/277 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKPS---------------------VKDQ 36
A+ ++ D +A+GHYA + H +P KDQ
Sbjct: 99 AVDNLGADAIATGHYARTSLEDEEVFHQKHTKRPQRLLRIRFEVRNTVKLLQGADLFKDQ 158
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LR+ IF H VL + ++
Sbjct: 159 TFFLSQISQDALRKTIFPLGDLTKSFVKKIAAEHDLHHVLKKKESMGVCFIGERNFENFL 218
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E + +H+G++ +TIGQ L L + +VV+KD+ VFV+
Sbjct: 219 LEYLEPQPGNFVSIEDKKVMGRHKGWFLFTIGQRARLAGLKDAW-FVVDKDVSTGNVFVA 277
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP EK+ + H F + C LT+ +DG
Sbjct: 278 PTRDHPALYRDLLRTNRVHWIAEEPPAELVREKMMECHFRFRHQMALVPCVLTLN--QDG 335
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+ +V+ + + + GQFA FY+G CLGSG I+
Sbjct: 336 SVWVTLVKPA---RAITPGQFAVFYKGDECLGSGKIV 369
>gi|325854955|ref|ZP_08171671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella denticola CRIS 18C-A]
gi|325483933|gb|EGC86873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella denticola CRIS 18C-A]
Length = 360
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 110/259 (42%), Gaps = 70/259 (27%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
D ++D +A+GHYA + +S D VKDQT FL+ + QL++ +
Sbjct: 114 FDEKMGHDYDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQIYDWQLKKAL 168
Query: 53 FHLVLYPRLTI-------------------------------------PMEGIILEAETG 75
F + Y + + G I+E ETG
Sbjct: 169 FPIGHYEKDEVRRIAEREHLINAHRKDSQGICFLGNIDYNEYVRRYLGEQTGDIIELETG 228
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHL 130
+ +HRG WF+TIGQ + LGL + +VV KD++ NI++VS Y Y + H
Sbjct: 229 KKIGEHRGLWFHTIGQRKGLGLGGGPW-FVVRKDVDKNILYVSHGYDPETAYKSNFPLHD 287
Query: 131 FHAGSLKLLSGLP--PEKIS--QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
FH L G+ PEKI+ H+ Y+ + +E DG ++ + G+A G
Sbjct: 288 FHF----LTEGITELPEKITFKIRHTPEYHPA-RVEQLPDGK---CIIHSAGRIHGVAPG 339
Query: 187 QFAAFY--QGRRCLGSGVI 203
QF Y RC GSG I
Sbjct: 340 QFCVVYDEHHHRCYGSGEI 358
>gi|56421098|ref|YP_148416.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus
HTA426]
gi|375009657|ref|YP_004983290.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|448238842|ref|YP_007402900.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
[Geobacillus sp. GHH01]
gi|81557817|sp|Q5KWT8.1|MNMA2_GEOKA RecName: Full=tRNA-specific 2-thiouridylase MnmA 2
gi|56380940|dbj|BAD76848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus kaustophilus HTA426]
gi|359288506|gb|AEV20190.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207684|gb|AGE23149.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
[Geobacillus sp. GHH01]
Length = 371
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DY+A+GHYA V ++K KDQTYFL+ L QAQL +++F + +
Sbjct: 119 SIGADYIATGHYARVEFRDGEYKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHLQKAD 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + +++ G+ +H G +
Sbjct: 179 VRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPAQPGVMKTLDGEVKGRHDGVMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD+ N+++V++ + + A + +S PE
Sbjct: 239 YTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVSDRKPE 298
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ + F + +T+ DGG A V + + GQ FY G CLG G
Sbjct: 299 APFRCTAKFRYRQPDVGVTVHPLADGG---AEVVFDAPARAVTPGQAVVFYNGEECLGGG 355
Query: 202 VILEAW 207
I E +
Sbjct: 356 TIDEVF 361
>gi|260912505|ref|ZP_05919040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 472 str. F0295]
gi|260633384|gb|EEX51539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 472 str. F0295]
Length = 358
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 101/250 (40%), Gaps = 62/250 (24%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
E+D +A+GHYA + +S D VKDQT FL+ + QL++ IF + Y
Sbjct: 121 EYDLIATGHYAQTEWIDGKKWLVTSPD-----PVKDQTDFLAQIYDWQLQKAIFPIGHYQ 175
Query: 60 -------------------------------------RLTIPMEGIILEAETGDFLEKHR 82
R G +LE E+ + HR
Sbjct: 176 KGEVREIAEREHLINAKRKDSQGICFLGKINYNDYIRRFLGENPGEVLELESEKKIGMHR 235
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
G WF+TIGQ LG + Y V+KD+E N++FVS+ Y + F L LL+
Sbjct: 236 GLWFHTIGQRHGLGFGGGPW-YAVKKDVERNVLFVSKGYEPATAYKKGFKVHDLHLLTA- 293
Query: 143 PPEKISQLHSVFYNCSL---TIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRC 197
P + + + + +E DGG +V QG+A GQF Y + RC
Sbjct: 294 PLDGLDVTFKIRHTPEYHRAQLEPLPDGG---YIVHAEAPMQGVAPGQFCVIYDKEHHRC 350
Query: 198 LGSGVILEAW 207
GS I AW
Sbjct: 351 FGSAEI--AW 358
>gi|46907740|ref|YP_014129.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes serotype
4b str. F2365]
gi|226224113|ref|YP_002758220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254824429|ref|ZP_05229430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J1-194]
gi|254852136|ref|ZP_05241484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL R2-503]
gi|254931447|ref|ZP_05264806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes HPB2262]
gi|254993966|ref|ZP_05276156.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
J2-064]
gi|300764822|ref|ZP_07074812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL N1-017]
gi|386732250|ref|YP_006205746.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes
07PF0776]
gi|404281071|ref|YP_006681969.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2755]
gi|404286934|ref|YP_006693520.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405749856|ref|YP_006673322.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes ATCC 19117]
gi|405752732|ref|YP_006676197.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2378]
gi|405755670|ref|YP_006679134.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2540]
gi|406704285|ref|YP_006754639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes L312]
gi|417316053|ref|ZP_12102711.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J1816]
gi|417317625|ref|ZP_12104237.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J1-220]
gi|422809592|ref|ZP_16858003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J1-208]
gi|424714387|ref|YP_007015102.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes serotype
4b str. LL195]
gi|424823274|ref|ZP_18248287.1| tRNA-specific 2-thiouridylase mnmA [Listeria monocytogenes str.
Scott A]
gi|67461977|sp|Q71ZF8.1|MNMA_LISMF RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|259495831|sp|C1KVF9.1|MNMA_LISMC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|46881009|gb|AAT04306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes serotype 4b str. F2365]
gi|225876575|emb|CAS05284.1| Putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|258605439|gb|EEW18047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL R2-503]
gi|293582998|gb|EFF95030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes HPB2262]
gi|293593665|gb|EFG01426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J1-194]
gi|300514498|gb|EFK41555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL N1-017]
gi|328465550|gb|EGF36779.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J1816]
gi|328474873|gb|EGF45673.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J1-220]
gi|332311954|gb|EGJ25049.1| tRNA-specific 2-thiouridylase mnmA [Listeria monocytogenes str.
Scott A]
gi|378753206|gb|EHY63791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J1-208]
gi|384391008|gb|AFH80078.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes
07PF0776]
gi|404219056|emb|CBY70420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes ATCC 19117]
gi|404221932|emb|CBY73295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2378]
gi|404224870|emb|CBY76232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2540]
gi|404227706|emb|CBY49111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2755]
gi|404245863|emb|CBY04088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361315|emb|CBY67588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes L312]
gi|424013571|emb|CCO64111.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes serotype
4b str. LL195]
Length = 371
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLNGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|309807698|ref|ZP_07701637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 01V1-a]
gi|308169072|gb|EFO71151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 01V1-a]
Length = 301
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 102/256 (39%), Gaps = 51/256 (19%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DY+A GHYA V + H +P KDQTYFLS ++Q QL++ IF L
Sbjct: 39 LDFAMKLDADYIAMGHYAKTVTDKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLA 98
Query: 57 LYPRLTI-------------------------------------PMEGIILEAETGDFLE 79
+ + M G I+ A+ G +
Sbjct: 99 DLSKPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTAD-GRIVG 157
Query: 80 KHRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
KH G +YTIGQ LGL +VV K+++ N + V + Y S A
Sbjct: 158 KHSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASE 217
Query: 136 LKLLSGLPPEKISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +GLP + +H + + + + + V+ E + + GQ F
Sbjct: 218 VSFFTGLPSNDTT-IHCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 276
Query: 192 YQGRRCLGSGVILEAW 207
Y G CLG +I +A+
Sbjct: 277 YDGEECLGGAIIDKAY 292
>gi|408411383|ref|ZP_11182543.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sp. 66c]
gi|409350252|ref|ZP_11233438.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus equicursoris CIP
110162]
gi|407874458|emb|CCK84349.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sp. 66c]
gi|407877576|emb|CCK85496.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus equicursoris CIP
110162]
Length = 375
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 99/254 (38%), Gaps = 47/254 (18%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL- 55
+D +++ DY+A GHYA + H +P KDQTYFLS LSQ Q+++++F L
Sbjct: 113 LDYAMNLDADYLAMGHYAKTMVDDQGVTHMMRPKDGNKDQTYFLSQLSQEQIKKVMFPLQ 172
Query: 56 -VLYPRLTIPME-------------GI--------------ILEAETGDFLEK------- 80
+ P + E GI L A+ GD +
Sbjct: 173 DLTKPEVRQIAEEAGLATAKKKDSTGICFIGERNFKHFLSEFLPAQAGDMVTPDGQVVGH 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ Q LGL +VV KD+ N + V + Y S A +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLSKNQLIVEQGYDSPLLYADRLVASGM 292
Query: 137 KLLSGLPPEKISQLHSV---FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
+G P + + + C + + A V E + + GQ Y
Sbjct: 293 TFFTGNPDHDVEFKATAKFRYRQCDVGVYVKYHAATKTADVYFDEPARAVTPGQALVLYN 352
Query: 194 GRRCLGSGVILEAW 207
G CLG G I AW
Sbjct: 353 GEECLGGGNIDAAW 366
>gi|332878522|ref|ZP_08446243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357045011|ref|ZP_09106655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paraprevotella clara YIT 11840]
gi|332683617|gb|EGJ56493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355532059|gb|EHH01448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paraprevotella clara YIT 11840]
Length = 352
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 98/240 (40%), Gaps = 47/240 (19%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
+D +A+GHYA V + VKDQT FL+ + Q+ +L+F +
Sbjct: 113 YDKIATGHYATVRERDGKIWLGTARDPVKDQTDFLAQIDSLQVAKLMFPVGDLMKEEVRR 172
Query: 57 ----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG ++E ETG + H+G+WF+T
Sbjct: 173 IADTQRLPSAKRRDSQGICFLGQIDYNDFVRRFLGEREGAVIEIETGRRIGTHKGYWFHT 232
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + LGL + +VV+KD+E NI++VS Y + + H F+ ++ P
Sbjct: 233 IGQRKGLGLGGGPW-FVVKKDVEQNILYVSHGYDTLLQYGHSFNLKDFHFITENPWGDAP 291
Query: 149 QLHSVF---YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR--CLGSGVI 203
++ F + G ++ E QG+A GQF Y C+GSG I
Sbjct: 292 EVDVTFKTRHQPHFMKGRLHRAGHGYR-LESPERIQGIAPGQFGVVYDAAAEICIGSGEI 350
>gi|307564524|ref|ZP_07627065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella amnii CRIS 21A-A]
gi|307346884|gb|EFN92180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella amnii CRIS 21A-A]
Length = 387
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 109/273 (39%), Gaps = 85/273 (31%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
E+D +A+GHYA + +S D +VKDQT FLS + QL++ IF + Y
Sbjct: 121 EYDLIATGHYAQTKWIDGKKWLCTSPD-----AVKDQTDFLSQIYPWQLQKAIFPIGHYA 175
Query: 60 RLTI-------------------------------------PMEGIILEAETGDFLEKHR 82
+ + +G I+E ETG + +H+
Sbjct: 176 KDEVRRIAEREHLINAARKDSQGICFLGNIDYNEYVRRYLGESKGDIIEKETGKKIGEHK 235
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-YSFDKKR-------HLFHAG 134
G WF+TIGQ + LGL + +VV KD+E N+++VS Y KR H
Sbjct: 236 GLWFHTIGQRKGLGLGGGPW-FVVSKDVERNVLYVSHGYDPELAYKRSFKVLGLHWLTPE 294
Query: 135 SLKLLSG---------LPPEKISQL-------------HSVFYNCSLTIEHCEDGGEDIA 172
L+L G L E ++L H F T E +GG
Sbjct: 295 GLELFEGKDGVGLQEDLSIESHTRLIPITFKIRHTPEYHKGFLEVGSTKEALAEGGS--G 352
Query: 173 VVQLSEDDQGLAAGQFAAFY--QGRRCLGSGVI 203
V+ + G+A GQF Y Q RC GSG I
Sbjct: 353 VIHSQQKIHGVAPGQFCVIYDEQHDRCYGSGEI 385
>gi|336054334|ref|YP_004562621.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus kefiranofaciens
ZW3]
gi|333957711|gb|AEG40519.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus kefiranofaciens
ZW3]
Length = 375
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 101/255 (39%), Gaps = 49/255 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSS--ADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DY+A GHYA + + H +P KDQTYFLS L+Q Q+ ++IF L
Sbjct: 113 LDFAMDLDADYIAMGHYAKTMKDANGVTHMMRPKDGNKDQTYFLSQLNQEQISKVIFPLA 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
+ P++ +P + + G + +
Sbjct: 173 NLTKPQVREIALENGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ Q LGL +VV KD++ N + V + Y S A +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDM 292
Query: 137 KLLSGLPPEKISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+G P ++H + C + + ++ A V E + + GQ Y
Sbjct: 293 SFFTGQPDHDF-EIHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLY 351
Query: 193 QGRRCLGSGVILEAW 207
G CLG G I A+
Sbjct: 352 NGEECLGGGNIDAAY 366
>gi|309805355|ref|ZP_07699405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 09V1-c]
gi|308165355|gb|EFO67588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 09V1-c]
Length = 375
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 102/256 (39%), Gaps = 51/256 (19%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DY+A GHYA V + H +P KDQTYFLS ++Q QL++ IF L
Sbjct: 113 LDFAMKLDADYIAMGHYAKTVTDKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLA 172
Query: 57 LYPRLTI-------------------------------------PMEGIILEAETGDFLE 79
+ + M G I+ A+ G +
Sbjct: 173 DLSKPQVRMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLPAMGGKIVTAD-GRIVG 231
Query: 80 KHRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
KH G +YTIGQ LGL +VV K+++ N + V + Y S A
Sbjct: 232 KHSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASE 291
Query: 136 LKLLSGLPPEKISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +GLP + +H + + + + + V+ E + + GQ F
Sbjct: 292 VSFFTGLPSNDTT-IHCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 350
Query: 192 YQGRRCLGSGVILEAW 207
Y G CLG +I +A+
Sbjct: 351 YDGEECLGGAIIDKAY 366
>gi|191638296|ref|YP_001987462.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus casei BL23]
gi|385819996|ref|YP_005856383.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei LC2W]
gi|385823196|ref|YP_005859538.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei BD-II]
gi|190712598|emb|CAQ66604.1| Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei BL23]
gi|327382323|gb|AEA53799.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei LC2W]
gi|327385523|gb|AEA56997.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei BD-II]
Length = 443
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA V VH AD KDQTYFLS LSQ QL++
Sbjct: 183 LDYADQLNADYIAMGHYAQVKTDENGIVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 237
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F + + P + E GI L A+ G +
Sbjct: 238 LFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 297
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 298 VEMGTHDGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 357
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + + F + +T+ + +DG A V + + GQ
Sbjct: 358 SASNLNWTTGQAPAEGTHMTAKFRYRQRDTGVTLHYHDDG---TATVDFDVPVRAITPGQ 414
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 415 AVVFYDGDECLGGGTIDAAY 434
>gi|227535218|ref|ZP_03965267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|227187102|gb|EEI67169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus paracasei subsp. paracasei ATCC 25302]
Length = 471
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA V VH AD KDQTYFLS LSQ QL++
Sbjct: 211 LDYADQLNADYIAMGHYAQVKTDENGIVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 265
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F + + P + E GI L A+ G +
Sbjct: 266 LFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 325
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 326 VEMGTHDGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 385
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + + F + +T+ + +DG A V + + GQ
Sbjct: 386 SASNLNWTTGQAPAEGTHMTAKFRYRQRDTGVTLHYHDDG---TATVDFDVPVRAITPGQ 442
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 443 AVVFYDGDECLGGGTIDAAY 462
>gi|290893871|ref|ZP_06556849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J2-071]
gi|404407950|ref|YP_006690665.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2376]
gi|290556588|gb|EFD90124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL J2-071]
gi|404242099|emb|CBY63499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC2376]
Length = 371
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAAKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|47093434|ref|ZP_00231199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes str. 4b H7858]
gi|47018213|gb|EAL08981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes str. 4b H7858]
Length = 333
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 81 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 140
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 141 VREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLNGEVLGKHDGLMY 200
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 201 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAEKP 260
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 261 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 317
Query: 202 VILEAW 207
I W
Sbjct: 318 TIDTVW 323
>gi|374625757|ref|ZP_09698173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Coprobacillus sp. 8_2_54BFAA]
gi|373915417|gb|EHQ47188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Coprobacillus sp. 8_2_54BFAA]
Length = 377
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 112/261 (42%), Gaps = 52/261 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVH-SSADH---KDKPSVKDQTYFL---------------S 41
+D ++ DY+A+GHYA V H AD K + KDQTYFL
Sbjct: 119 LDFAKTLNADYIATGHYAQVKHYQGADSVMLKGLDNNKDQTYFLCQLNQQQLQNSLFPLG 178
Query: 42 HLSQAQLRRLIFHLVL---------------------YPRLTIPME-GIILEAETGDFLE 79
+ + ++RR+ L L + + IP + G +++ ETG+ +
Sbjct: 179 EIDKTEVRRIARELNLPVADKKDSTGICFIGERDFKEFLQNYIPAQAGKMVDIETGNVIG 238
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK- 137
H G +YTIGQ + LG+ +VV KD + N++++ + D+K L+ G+L
Sbjct: 239 DHSGIMYYTIGQRKGLGIGGPGDAWFVVGKDYDKNVLYICQG----DQKDWLYSTGALIT 294
Query: 138 ----LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
+ S P +KI+ Y E ED + + + + GQ A FY
Sbjct: 295 DVNWIPSTKPIDKIACNAKFRYRQPDNPIQLEFIDEDTVYLTFDKPIKAVTPGQAAVFYD 354
Query: 194 GRRCLGSGVILEAWDDQGFPV 214
G CLG G I + D G P+
Sbjct: 355 GDICLGGGTIETVYKD-GQPI 374
>gi|312872357|ref|ZP_07732427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2062A-h1]
gi|349611351|ref|ZP_08890588.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sp. 7_1_47FAA]
gi|311092180|gb|EFQ50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2062A-h1]
gi|348609277|gb|EGY59236.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sp. 7_1_47FAA]
Length = 375
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 102/256 (39%), Gaps = 51/256 (19%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DY+A GHYA V + H +P KDQTYFLS ++Q QL++ IF L
Sbjct: 113 LDFAMKLDADYIAMGHYAKTVTDKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLA 172
Query: 57 LYPRLTI-------------------------------------PMEGIILEAETGDFLE 79
+ + M G I+ A+ G +
Sbjct: 173 DLSKPQVRMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTAD-GRIVG 231
Query: 80 KHRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
KH G +YTIGQ LGL +VV K+++ N + V + Y S A
Sbjct: 232 KHSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASE 291
Query: 136 LKLLSGLPPEKISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +GLP + +H + + + + + V+ E + + GQ F
Sbjct: 292 VSFFTGLPSNDTT-IHCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 350
Query: 192 YQGRRCLGSGVILEAW 207
Y G CLG +I +A+
Sbjct: 351 YDGEECLGGAIIDKAY 366
>gi|406982662|gb|EKE03949.1| hypothetical protein ACD_20C00124G0001 [uncultured bacterium]
Length = 364
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 99/242 (40%), Gaps = 52/242 (21%)
Query: 5 SSMEFDYVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
S ++FD A+GHYANV + S+ K + KDQTYF+ LSQ QL ++IF L Y
Sbjct: 125 SGIKFDKFATGHYANVAYDSSKGRYLLKKAADTRKDQTYFIYRLSQEQLSKVIFPLGDYF 184
Query: 60 RLTIP--------------------------MEGIILEA-----ETGDFLEKHRGFWFYT 88
+ I + G+ LE + G+ L H G W YT
Sbjct: 185 KEEIKEIARKNGLDVADKEESQDFYSGDYNELLGVNLEKGNIVDKAGNILGTHNGIWNYT 244
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
+GQ + LG+ YV+E + E N V V Y D ++ A + ++ I
Sbjct: 245 LGQRKGLGIAARHSLYVIELNKEKNEVVVG---YEEDTYQNALIANDINWIA------ID 295
Query: 149 QLHS-VFYNCSLTIEHCEDG------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
L S V + E GE V+ + + + GQ FYQ LG G
Sbjct: 296 NLTSEVSIKAKIRSSQSEKDVIIKPHGESEVYVEFVDYQKAITTGQSIVFYQDDLVLGGG 355
Query: 202 VI 203
+I
Sbjct: 356 II 357
>gi|387133005|ref|YP_006298977.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Prevotella intermedia 17]
gi|386375853|gb|AFJ08653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella intermedia 17]
Length = 376
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 105/267 (39%), Gaps = 70/267 (26%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
D ++D +A+GHYA + +S D VKDQT FL+ + QLR+ I
Sbjct: 114 FDEKCGHDYDLIATGHYAQTKWIDGKKWLCTSPD-----PVKDQTDFLAQIYDWQLRKAI 168
Query: 53 FHLVLYPRLTI-------------------------------------PMEGIILEAETG 75
F + Y + + G ++E ETG
Sbjct: 169 FPIGHYAKNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQVGDVVELETG 228
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+ +H+G WF+TIGQ + LG + +VV+KD+ N++FVS Y + F
Sbjct: 229 KKIGQHKGLWFHTIGQRKGLGFGGGPW-FVVKKDVAANVLFVSHGYDPETAYKKDFKVHG 287
Query: 136 LKLLSGLP-PE----------KISQLHSV-----FYNCSLTIEHCEDGGEDIAVVQLSED 179
L L+ P PE KIS + F+ L + D E + SED
Sbjct: 288 LHWLTETPRPESGDSDAEMAGKISICFKIRHTPEFHKGYLELLPAADNSEPTEAIVHSED 347
Query: 180 D-QGLAAGQFAAFYQG--RRCLGSGVI 203
G+A GQF Y RC GS I
Sbjct: 348 KIHGVAPGQFCVIYDKNHNRCFGSAEI 374
>gi|311031538|ref|ZP_07709628.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. m3-13]
Length = 371
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 101/238 (42%), Gaps = 47/238 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLV---------- 56
DY+A+GHYA V ++K + KDQTYFL+ L Q QL +++F +
Sbjct: 123 DYLATGHYAQVEFRDGEYKMLRGLDENKDQTYFLNQLGQEQLSKVMFPIGNIEKSEVREI 182
Query: 57 -----LYPRLTIPMEGII--------------LEAETGDFLE-------KHRGFWFYTIG 90
L GI L A+ G+ L KH G +YTIG
Sbjct: 183 AKRAGLATATKKDSTGICFIGERNFKEFLSGYLPAQPGNMLTMDGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ +V+ KD+E N+++V +++++ A + +S PP +
Sbjct: 243 QRHGLGIGGSGDPWFVIGKDLEKNVLYVGQSFHNELLYSDSITATDISWVSNNPPADGTV 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ F + +TI+H ED + V E + + GQ FY G CLG G I
Sbjct: 303 CTAKFRYRQADNKVTIQHLED---NKVKVIFDEPVRAITPGQAVVFYNGDECLGGGTI 357
>gi|340353154|ref|ZP_08675982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella pallens ATCC 700821]
gi|339611350|gb|EGQ16180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella pallens ATCC 700821]
Length = 376
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 101/262 (38%), Gaps = 60/262 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
D +D +A+GHYA + VKDQT FL+ + QLR+ +F +
Sbjct: 114 FDEKCGHNYDLIATGHYAQTKWINGKKWLCTSPDPVKDQTDFLAQIYDWQLRKALFPIGH 173
Query: 58 YPRLTI-------------------------------------PMEGIILEAETGDFLEK 80
Y + + G ++E ETG + +
Sbjct: 174 YEKNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQVGDVVELETGKIIGQ 233
Query: 81 HRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
H+G WF+TIGQ + LG + +VV+KD+ N++FVS Y + F L L+
Sbjct: 234 HKGLWFHTIGQRKGLGFGGGPW-FVVKKDVTTNVLFVSHGYDPETAYKKDFRVHGLHWLT 292
Query: 141 GLP-----------PEKISQLHSV-----FYNCSLTIEHCEDGGEDIAVVQLSEDD-QGL 183
P E+IS + F+ L + + GE + SED G+
Sbjct: 293 ETPCSEVGNNNVEATEQISICFKIRHTPEFHKGYLELLSTNNEGEPTEAIVHSEDKIHGV 352
Query: 184 AAGQFAAFYQG--RRCLGSGVI 203
A GQF Y RC GS I
Sbjct: 353 APGQFCVIYDKDHNRCFGSAEI 374
>gi|217964341|ref|YP_002350019.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes HCC23]
gi|386008283|ref|YP_005926561.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes L99]
gi|386026885|ref|YP_005947661.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Listeria monocytogenes M7]
gi|254811452|sp|B8DDZ8.1|MNMA_LISMH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|217333611|gb|ACK39405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes HCC23]
gi|307571093|emb|CAR84272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes L99]
gi|336023466|gb|AEH92603.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Listeria monocytogenes M7]
Length = 371
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ D+VA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADFVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLNGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAAKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|259500706|ref|ZP_05743608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners DSM 13335]
gi|302191396|ref|ZP_07267650.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus iners AB-1]
gi|309803957|ref|ZP_07698040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 11V1-d]
gi|309809301|ref|ZP_07703170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners SPIN 2503V10-D]
gi|312873992|ref|ZP_07734028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2052A-d]
gi|315653459|ref|ZP_07906380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners ATCC 55195]
gi|325911482|ref|ZP_08173893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners UPII 143-D]
gi|329921278|ref|ZP_08277716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners SPIN 1401G]
gi|259168090|gb|EEW52585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners DSM 13335]
gi|308163959|gb|EFO66223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LactinV 11V1-d]
gi|308170414|gb|EFO72438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners SPIN 2503V10-D]
gi|311090541|gb|EFQ48949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 2052A-d]
gi|315489150|gb|EFU78791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners ATCC 55195]
gi|325476682|gb|EGC79837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners UPII 143-D]
gi|328934570|gb|EGG31074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners SPIN 1401G]
Length = 375
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 100/255 (39%), Gaps = 49/255 (19%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DY+A GHYA V + H +P KDQTYFLS ++Q QL++ IF L
Sbjct: 113 LDFAMKLDADYIAMGHYAKTVTDENGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLA 172
Query: 57 LYPRLTIPM---------------EGIILEAE---------------------TGDFLEK 80
+ + M GI E G + K
Sbjct: 173 DLSKPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTSDGRIVGK 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ LGL +VV K+++ N + V + Y S A +
Sbjct: 233 HSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEV 292
Query: 137 KLLSGLPPEKISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+GLP + +H + + + + + V+ E + + GQ FY
Sbjct: 293 SFFTGLPSNDTT-IHCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFY 351
Query: 193 QGRRCLGSGVILEAW 207
G CLG +I +A+
Sbjct: 352 DGEECLGGAIIDKAY 366
>gi|116494783|ref|YP_806517.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus casei ATCC 334]
gi|301066347|ref|YP_003788370.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Lactobacillus casei str. Zhang]
gi|409997158|ref|YP_006751559.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei W56]
gi|417980590|ref|ZP_12621270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 12A]
gi|418001927|ref|ZP_12642055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UCD174]
gi|418005007|ref|ZP_12645007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UW1]
gi|418010751|ref|ZP_12650522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei Lc-10]
gi|122263799|sp|Q039P7.1|MNMA_LACC3 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116104933|gb|ABJ70075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei ATCC 334]
gi|300438754|gb|ADK18520.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, PP-loop ATPase [Lactobacillus casei
str. Zhang]
gi|406358170|emb|CCK22440.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei W56]
gi|410524913|gb|EKP99820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 12A]
gi|410545372|gb|EKQ19672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UCD174]
gi|410548004|gb|EKQ22224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UW1]
gi|410553330|gb|EKQ27333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei Lc-10]
Length = 377
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA V VH AD KDQTYFLS LSQ QL++
Sbjct: 117 LDYADQLNADYIAMGHYAQVKTDENGIVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 171
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F + + P + E GI L A+ G +
Sbjct: 172 LFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 231
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 232 VEMGTHDGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 291
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + + F + +T+ + +DG A V + + GQ
Sbjct: 292 SASNLNWTTGQAPAEGTHMTAKFRYRQRDTGVTLHYHDDG---TATVDFDVPVRAITPGQ 348
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 349 AVVFYDGDECLGGGTIDAAY 368
>gi|417983366|ref|ZP_12624004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 21/1]
gi|417992807|ref|ZP_12633159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei CRF28]
gi|417996155|ref|ZP_12636438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei M36]
gi|418014884|ref|ZP_12654473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei Lpc-37]
gi|410528312|gb|EKQ03165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 21/1]
gi|410532598|gb|EKQ07300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei CRF28]
gi|410535864|gb|EKQ10474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei M36]
gi|410552706|gb|EKQ26721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei Lpc-37]
Length = 377
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA V VH AD KDQTYFLS LSQ QL++
Sbjct: 117 LDYADQLNADYIAMGHYAQVKTDENGIVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 171
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F + + P + E GI L A+ G +
Sbjct: 172 LFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 231
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 232 VEMGTHDGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 291
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + + F + +T+ + +DG A V + + GQ
Sbjct: 292 SASNLNWTTGQAPTEGTHMTAKFRYRQRDTGVTLHYHDDG---TATVDFDVPVRAITPGQ 348
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 349 AVVFYDGDECLGGGTIDAAY 368
>gi|395242171|ref|ZP_10419170.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus pasteurii CRBIP
24.76]
gi|394480532|emb|CCI85410.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus pasteurii CRBIP
24.76]
Length = 375
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 99/249 (39%), Gaps = 49/249 (19%)
Query: 7 MEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA V + H +P KDQTYFLS LSQ Q++++IF L + P+
Sbjct: 119 LDADYIAMGHYAKTVTDENGVTHMMRPKDGNKDQTYFLSQLSQDQIKKVIFPLADLTKPQ 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P + + G+ + +H G +
Sbjct: 179 VREIALANGLATAKKKDSTGICFIGERNFRKFLTEFLPAKSGKMVKPNGEVVGEHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD++ N + V + Y S A + +G
Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYADRLTASDMSFFTGQ 298
Query: 143 PPEKISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
P ++H + C L + + V E + + GQ Y G C+
Sbjct: 299 PDHDF-EMHCTAKFRYRQCDLGVTVHYHADTNTVDVYFDEPARAITPGQALVLYDGDECI 357
Query: 199 GSGVILEAW 207
G G I A+
Sbjct: 358 GGGNIDAAY 366
>gi|116492933|ref|YP_804668.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
PP-loop ATPase [Pediococcus pentosaceus ATCC 25745]
gi|421894298|ref|ZP_16324788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus pentosaceus IE-3]
gi|122265603|sp|Q03EZ6.1|MNMA_PEDPA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116103083|gb|ABJ68226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus pentosaceus ATCC 25745]
gi|385272842|emb|CCG90160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus pentosaceus IE-3]
Length = 377
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 108/263 (41%), Gaps = 58/263 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D S+ DYVA+GHYA V H + S KDQTYFLS LS QL R++F L
Sbjct: 113 LDYAISLGADYVATGHYAQVERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLG 172
Query: 56 -VLYPRLTIPME---------------------------GIILEAETGDFLE-------K 80
++ P + E G L A+ G + +
Sbjct: 173 GMIKPEVRKVAEEAGLSVYDKKDSVGICFIGEKNFREFLGNYLPAKAGKMMTLDGEVKGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ +VV KD+ NI++V + + + HL+ A SL
Sbjct: 233 HAGLMYYTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVGQGF----ENSHLY-AASL 287
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDG-------GEDIAVVQLSEDD--QGLAAGQ 187
K+ + + C+ + ED + V + DD + + GQ
Sbjct: 288 DASDMHFVNKLGEERGRDFRCTAKFRYRAQDVPVTVHFSEDFSKVTVDFDDPARAITPGQ 347
Query: 188 FAAFYQGRRCLGSGVILEAWDDQ 210
Y G C+G G+I A++ +
Sbjct: 348 ALVLYDGEECIGGGIIDAAYNSE 370
>gi|297529272|ref|YP_003670547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. C56-T3]
gi|297252524|gb|ADI25970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. C56-T3]
Length = 371
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DY+A+GHYA V ++K KDQTYFL+ L QAQL +++F + +
Sbjct: 119 SIGADYIATGHYARVEFRDGEYKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHLQKAD 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P +++ G+ +H G +
Sbjct: 179 VRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPARPGVMKTLDGEVKGRHDGVMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD+ N+++V++ + + A + +S PE
Sbjct: 239 YTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVSDRKPE 298
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ + F + +T+ DGG A V + + GQ FY G CLG G
Sbjct: 299 APFRCTAKFRYRQPDVGVTVHPLADGG---AEVVFDAPARAVTPGQAVVFYNGEECLGGG 355
Query: 202 VILEAW 207
I E +
Sbjct: 356 TIDEVF 361
>gi|417989552|ref|ZP_12630056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei A2-362]
gi|410537939|gb|EKQ12501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei A2-362]
Length = 377
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA V VH AD KDQTYFLS LSQ QL++
Sbjct: 117 LDYADQLNADYIAMGHYAQVKTDENGIVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 171
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F + + P + E GI L A+ G +
Sbjct: 172 LFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 231
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 232 VEXGTHDGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 291
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + + F + +T+ + +DG A V + + GQ
Sbjct: 292 SASNLNWTTGQAPAEGTHMTAKFRYRQRDTGVTLHYHDDG---TATVDFDVPVRAITPGQ 348
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 349 AVVFYDGDECLGGGTIDAAY 368
>gi|239631620|ref|ZP_04674651.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|417986664|ref|ZP_12627230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 32G]
gi|418007896|ref|ZP_12647768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UW4]
gi|239526085|gb|EEQ65086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|410525125|gb|EKQ00031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei 32G]
gi|410547981|gb|EKQ22202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus casei UW4]
Length = 376
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA V VH AD KDQTYFLS LSQ QL++
Sbjct: 116 LDYADQLNADYIAMGHYAQVKTDENGIVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 170
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F + + P + E GI L A+ G +
Sbjct: 171 LFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 230
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 231 VEMGTHDGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 290
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + + F + +T+ + +DG A V + + GQ
Sbjct: 291 SASNLNWTTGQAPAEGTHMTAKFRYRQRDTGVTLHYHDDG---TATVDFDVPVRAITPGQ 347
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 348 AVVFYDGDECLGGGTIDAAY 367
>gi|374606548|ref|ZP_09679405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus dendritiformis C454]
gi|374387859|gb|EHQ59324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus dendritiformis C454]
Length = 366
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 100/240 (41%), Gaps = 50/240 (20%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA VV K + KDQTYFL+ L+Q QL R +F + P+ +
Sbjct: 123 DYVATGHYARVVREDGQAKLLRGIDRNKDQTYFLNALNQEQLARAMFPIGHLPKPEVRRI 182
Query: 64 ---------------------------------PME-GIILEAETGDFLEKHRGFWFYTI 89
P + G +++ +G+ +H G +YT+
Sbjct: 183 AEEAGLATAKKKDSTGVCFIGERNFKEFLSQYLPAQPGDMIDIRSGELKGRHDGLMYYTL 242
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK 146
GQ Q LG+ +V EKD+ NI++V + + L A + ++G P+K
Sbjct: 243 GQRQGLGIGGSGTGEPWFVAEKDVARNILYVVQGDHPSLYSTGL-RATGVSWIAGEAPDK 301
Query: 147 ISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ Y + +TIE DG + V + + GQ FY G CLG G I
Sbjct: 302 LHCTAKFRYRQPDQEVTIERIGDGTYE---VTFGAHQKAVTPGQAVVFYDGEVCLGGGTI 358
>gi|312871416|ref|ZP_07731511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 3008A-a]
gi|311093069|gb|EFQ51418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus iners LEAF 3008A-a]
Length = 375
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 100/255 (39%), Gaps = 49/255 (19%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DY+A GHYA V + H +P KDQTYFLS ++Q QL++ IF L
Sbjct: 113 LDFAMKLDADYIAMGHYAKTVTDKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLA 172
Query: 57 LYPRLTIPM---------------EGIILEAE---------------------TGDFLEK 80
+ + M GI E G + K
Sbjct: 173 DLSKPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLPAMGGNIVTSDGRIVGK 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ LGL +VV K+++ N + V + Y S A +
Sbjct: 233 HSGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEV 292
Query: 137 KLLSGLPPEKISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+GLP + +H + + + + + V+ E + + GQ FY
Sbjct: 293 SFFTGLPSNDTT-IHCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFY 351
Query: 193 QGRRCLGSGVILEAW 207
G CLG +I +A+
Sbjct: 352 DGEECLGGAIIDKAY 366
>gi|261418420|ref|YP_003252102.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. Y412MC61]
gi|319767620|ref|YP_004133121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y412MC52]
gi|261374877|gb|ACX77620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y412MC61]
gi|317112486|gb|ADU94978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y412MC52]
Length = 371
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 101/246 (41%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DY+A+GHYA V ++K KDQTYFL+ L QAQL +++F + +
Sbjct: 119 SIGADYIATGHYARVEFRDGEYKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHLQKAD 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + +++ G+ +H G +
Sbjct: 179 VRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPAQPGVMKTLDGEVKGRHDGVMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD+ N+++V++ + + A + +S PE
Sbjct: 239 YTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVSDRKPE 298
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ + F + +T+ DGG ++ + + GQ FY G CLG G
Sbjct: 299 APFRCTAKFRYRQPDVGVTVHPLADGGVEVV---FDAPARAVTPGQAVVFYNGEECLGGG 355
Query: 202 VILEAW 207
I E +
Sbjct: 356 TIDEVF 361
>gi|404413591|ref|YP_006699178.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC7179]
gi|404239290|emb|CBY60691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC7179]
Length = 371
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DY+A+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYLATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDVCLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|71897067|ref|NP_001026522.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Gallus gallus]
gi|75571355|sp|Q5ZKW0.1|MTU1_CHICK RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
gi|53130608|emb|CAG31633.1| hypothetical protein RCJMB04_8p20 [Gallus gallus]
Length = 424
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 115/285 (40%), Gaps = 89/285 (31%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKPS---------------------VKDQ 36
A+ ++ D +A+GHYA + H +P KDQ
Sbjct: 115 AMDNLGADAIATGHYARTSLEDEEVFQQKHTKRPRELFRNRFEVRNTVKLLQGADLFKDQ 174
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPR---LTIPMEGI------ 68
T+FLS +SQ LR+ IF H VL + T P + +
Sbjct: 175 TFFLSQISQDALRKTIFPLGDLTKSFVRKIASEHGLHHVLKKKEACTTFPFQSMGVCFIG 234
Query: 69 ----------ILEAETGDFLE--------KHRGFWFYTIGQHQELGLLYIVYRYVVEKDI 110
LE + G+F+ H+G++ YTIGQ L L + +VV+KD+
Sbjct: 235 ERNFEKFLLEYLEPQPGNFVSIEDKKVMGTHKGWFLYTIGQRARLAGLQGAW-FVVDKDV 293
Query: 111 ENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSL 159
+FV+ + R L + ++ PP +K+ + H F + C L
Sbjct: 294 STGDIFVAPSTDHPALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVL 353
Query: 160 TIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
T+ +DG + +V+ + + L GQFA FY+G CLGSG IL
Sbjct: 354 TLN--QDGSVWVTLVKPA---RALTPGQFAVFYKGDECLGSGKIL 393
>gi|327313269|ref|YP_004328706.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Prevotella denticola F0289]
gi|326945092|gb|AEA20977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella denticola F0289]
Length = 360
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 107/251 (42%), Gaps = 70/251 (27%)
Query: 9 FDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60
+D +A+GHYA + +S D VKDQT FL+ L QL++ +F + Y +
Sbjct: 122 YDLIATGHYAQTEWIDGRKWLTTSPD-----PVKDQTDFLAQLYDWQLKKALFPIGHYEK 176
Query: 61 LTI-------------------------------------PMEGIILEAETGDFLEKHRG 83
+ G I+E ETG + +HRG
Sbjct: 177 DEVRRIAEREHLINAHRKDSQGICFLGNIDYNEYVHRYLGEQTGDIIELETGKKIGEHRG 236
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKL 138
WF+TIGQ + LGL + +VV KD++ NI++VS Y Y + H FH L
Sbjct: 237 LWFHTIGQRKGLGLGGGPW-FVVRKDVDKNILYVSHGYDPETAYKSNFPLHDFHF----L 291
Query: 139 LSGLP--PEKIS--QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY-- 192
G+ PEKI+ H+ Y+ + E DG ++ + G+A GQF Y
Sbjct: 292 TEGITELPEKITFKIRHTPEYHPARA-EQLPDGK---CIIHSAGRIHGVAPGQFCVVYDE 347
Query: 193 QGRRCLGSGVI 203
RC GSG I
Sbjct: 348 HHHRCYGSGEI 358
>gi|407477764|ref|YP_006791641.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium antarcticum B7]
gi|407061843|gb|AFS71033.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium antarcticum B7]
Length = 374
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 106/251 (42%), Gaps = 47/251 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---H 54
+D + D+VA+GHYA V+ +HK V KDQTYFL+ LSQ Q+ + +F H
Sbjct: 117 LDHAMRLGADFVATGHYARAVYEDGEHKMLRGVDTNKDQTYFLNQLSQDQIAKAMFPIGH 176
Query: 55 LVLYPRLTIPMEGIILEAETGD--------------FLE-------------------KH 81
+ I E + A+ D FL +H
Sbjct: 177 MEKSEVRKIAEEANLATAKKKDSTGICFIGERNFKQFLSQYLPAQPGEMRTLDGKSMGRH 236
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YT+GQ LG+ +VV K++ +NI+FV + +++ +A +
Sbjct: 237 DGLMYYTMGQRHGLGIGGDGEPWFVVGKNLADNILFVEQGFHNELLYSEGLYASDISWTC 296
Query: 141 GLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+P + + F + ++T+ E+G D+A E + + GQ FY G
Sbjct: 297 NMPAGTEFRCTAKFRYRQTDTAVTVRVLENGRLDVA---FDERQRAITPGQAVVFYDGDI 353
Query: 197 CLGSGVILEAW 207
CLG I EA+
Sbjct: 354 CLGGATIDEAY 364
>gi|315282423|ref|ZP_07870840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria marthii FSL S4-120]
gi|313613928|gb|EFR87655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria marthii FSL S4-120]
Length = 371
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHETLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|406970599|gb|EKD94927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[uncultured bacterium]
Length = 355
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 99/245 (40%), Gaps = 59/245 (24%)
Query: 9 FDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL---------- 55
FD+VA+GHY+ + + + + K V KDQ+YFL L Q QL IF L
Sbjct: 119 FDFVATGHYSGIENRNGEFKLLKGVDGGKDQSYFLYRLGQEQLGHTIFPLGELHKPEVRK 178
Query: 56 ----VLYPRLTIPME-GI--ILEAETGDFLEK-------------------HRGFWFYTI 89
+ P P GI I E + DFL K H G WF TI
Sbjct: 179 LAKDKMLPSYKRPESMGICFIGEVDIKDFLGKRIDEKKGKVITSTGEEIGDHDGVWFLTI 238
Query: 90 GQHQELGL--LYIVYRYVVEKDIENNIVFVSRNYYSFDKK-RHLFHAGSLKLLSGLPPEK 146
GQ L + YV+ KD+ N + V S+++ R F L + P +
Sbjct: 239 GQRHGFRLKKYFGDPMYVIAKDVGTNTLTVG----SYEEALRDKFAVSELSWVGANPFDN 294
Query: 147 ISQLHSVFYNCSLTIEH--------CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
++ C + I H + GE V LS G+AAGQ A FY+G L
Sbjct: 295 ADEI-----TCDVRIRHLGKLTPGVVKKSGEQTLNVSLSSKLFGVAAGQSAVFYKGDEVL 349
Query: 199 GSGVI 203
G G+I
Sbjct: 350 GGGII 354
>gi|334146356|ref|YP_004509283.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis TDC60]
gi|333803510|dbj|BAK24717.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis TDC60]
Length = 361
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 105/257 (40%), Gaps = 68/257 (26%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA + K VKDQT FL+ ++ AQ+ +L+F HL+
Sbjct: 114 QFDRIATGHYATTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG + +H+G+WF+
Sbjct: 174 AIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY------------YSFD-KKRHLFHAG 134
TIGQ + LGL + +VV+KDI+ NI+ VSR Y +FD + AG
Sbjct: 234 TIGQRKGLGLSGGPW-FVVKKDIKRNIILVSRGYDPDTQYGKTIEMETFDFITEDAYEAG 292
Query: 135 SLKLLSGLPPEKISQLHSVFYNCSLTIEHCED---GGEDIAVVQLSEDDQGLAAGQFAAF 191
P V + T E GE ++ E QG+A GQ+
Sbjct: 293 YWNREDATP---------VIFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVI 343
Query: 192 YQGRR--CLGSGVILEA 206
Y C GSG+I +
Sbjct: 344 YDEDHHFCYGSGMITKG 360
>gi|345876865|ref|ZP_08828626.1| putative high frequency lysogenization protein [endosymbiont of
Riftia pachyptila (vent Ph05)]
gi|344226065|gb|EGV52407.1| putative high frequency lysogenization protein [endosymbiont of
Riftia pachyptila (vent Ph05)]
Length = 381
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 103/254 (40%), Gaps = 61/254 (24%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYP 59
A+S++ +A+GHYA ++ S+ +++ + +V KDQTYFL L Q QL R F L
Sbjct: 131 ALSTLGASRIATGHYARLIESNGEYQLQRAVDENKDQTYFLYMLGQPQLSRSYFPLGSLA 190
Query: 60 RLTI------------------------------------PMEGIILEAETGDFLEKHRG 83
+ + P ++ G+ + +H G
Sbjct: 191 KTQVRELAEKAGFSNHKKKDSTGICFIGERKFRDFLSRYLPANPGAIQTPEGETIGQHSG 250
Query: 84 FWFYTIGQHQELGLLYI-----VYRYVVEKDIENNIVFVSRNY-YSFDKKRHLFHAGSLK 137
+YT+GQ Q LG+ I +VV KD++ N++ V++ + + R L AG L
Sbjct: 251 LMYYTLGQRQGLGIGGIKGTAEAPWFVVAKDLQRNLLIVAQGHQHPLLMSRSLV-AGQLH 309
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEH--------CEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ P+ + +C I H E G+D V + + GQ
Sbjct: 310 WIGARTPQ-------LPLSCKARIRHRQPLQSCWIEAQGKDGCRVHFDTPQRAVTPGQSI 362
Query: 190 AFYQGRRCLGSGVI 203
FY G CLG +I
Sbjct: 363 VFYSGPNCLGGAII 376
>gi|299822830|ref|ZP_07054716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria grayi DSM 20601]
gi|299816359|gb|EFI83597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria grayi DSM 20601]
Length = 370
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 97/242 (40%), Gaps = 47/242 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA + + V KDQTYFL+ LSQ QL +++F L +
Sbjct: 118 SLGADYVATGHYARTEIVDGEVQLLRGVDNNKDQTYFLNQLSQEQLSKVMFPLGGMEKSE 177
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + TG + KH G +
Sbjct: 178 VRDIAQKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLTGKRMGKHDGLMY 237
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +V KD+ENN++FV + ++ + A + S P E
Sbjct: 238 YTIGQRHGLGIGGDGEPWFVAGKDLENNVLFVEQGFHHDSLYSDMLIATDVSFTSNRPKE 297
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ + F + +T+ E+G A V E + + GQ FY G CLG
Sbjct: 298 MVFHCTAKFRYRQVDSGVTVYLTENG---TAKVVFDEPVRAITPGQAVVFYDGDICLGGA 354
Query: 202 VI 203
I
Sbjct: 355 TI 356
>gi|58337130|ref|YP_193715.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus NCFM]
gi|227903706|ref|ZP_04021511.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796]
gi|73920126|sp|Q5FKU0.1|MNMA_LACAC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|58254447|gb|AAV42684.1| tRNA-methyltransferase [Lactobacillus acidophilus NCFM]
gi|227868593|gb|EEJ76014.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796]
Length = 375
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 103/255 (40%), Gaps = 61/255 (23%)
Query: 7 MEFDYVASGHYANVVHSS--ADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
++ DY+A GHYA + + H +P KDQTYFLS LSQ Q++++IF L LT
Sbjct: 119 LDADYIAMGHYAKTITDANGVTHMMRPKDGNKDQTYFLSQLSQDQIKKVIFPLA---NLT 175
Query: 63 IPM-------EGII-------------------------LEAETGDFLE-------KHRG 83
P G++ L A++G + +H G
Sbjct: 176 KPQVREIALANGLVTAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPEGKVVGEHAG 235
Query: 84 FWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
+YTIGQ Q LGL +VV KD++ N + V + Y S A +
Sbjct: 236 LMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMSFF 295
Query: 140 SGLPPEKISQLHSV----FYNCSLTIE---HCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+G P ++H + C + + H +D D V E + + GQ Y
Sbjct: 296 TGKPDHDF-EMHCTAKFRYRQCDIGVTVKYHADDNTVD---VYFDEPARAVTPGQALVLY 351
Query: 193 QGRRCLGSGVILEAW 207
G C+G G I A+
Sbjct: 352 NGEECIGGGNIDAAF 366
>gi|421895595|ref|ZP_16325995.1| probable trna
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum MolK2]
gi|206586760|emb|CAQ17345.1| probable trna
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum MolK2]
Length = 370
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 101/256 (39%), Gaps = 61/256 (23%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + + DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLKAFDH-----TKDQSYFLHRLNQAQLSRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTRVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPEGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KD+ N ++V + + H
Sbjct: 225 TIGQHIGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
HA L ++G PP + + L + + T+ DG +A SE + GQ
Sbjct: 285 HADDLSWVAGHPPAEGTHLAAKTRYRQADAPCTVAGATDGALALA---FSEAQWAVTPGQ 341
Query: 188 FAAFYQGRRCLGSGVI 203
A Y G CLG G+I
Sbjct: 342 SAVLYDGDVCLGGGII 357
>gi|389571975|ref|ZP_10162063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus sp. M 2-6]
gi|388428461|gb|EIL86258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus sp. M 2-6]
Length = 372
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 57/254 (22%)
Query: 6 SMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIF--------- 53
S+ DY+A+GHYA V + + K + KDQTYFL+ L+Q QL +++F
Sbjct: 119 SLGADYLATGHYARVDRTGDEVKMLRGLDTNKDQTYFLNQLTQEQLDKVLFPIGDLEKKR 178
Query: 54 ---------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWF 86
+ + +P + +++ G+ +H G +
Sbjct: 179 VRELAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGVMQTMDGEVKGEHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL--LSGLP 143
YTIGQ Q LG+ +VV KD+E NI+FV + +++ L ++ S+ +S
Sbjct: 239 YTIGQRQGLGIGGSGDPWFVVGKDLEKNILFVEQGFHN-----PLLYSESISAVNISWTR 293
Query: 144 PEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
P + + + C+ + ++ GE A+V E + + GQ FY G
Sbjct: 294 PHIVGENGEL--TCTAKFRYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFYDGE 351
Query: 196 RCLGSGVILEAWDD 209
CLG G I + + D
Sbjct: 352 ECLGGGTIDDVFKD 365
>gi|307728482|ref|YP_003905706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia sp. CCGE1003]
gi|307583017|gb|ADN56415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia sp. CCGE1003]
Length = 385
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 103/262 (39%), Gaps = 61/262 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSA--------DHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D S+ + +A+GHYA V ++ DH KDQ+YFL L+QAQL + +
Sbjct: 110 LDHAMSLGAETIATGHYARVRENNGRFELLKAFDH-----TKDQSYFLHRLNQAQLSKTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTKVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPMKTTDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT GQ + +GL +V KDI +N +FV++ + H
Sbjct: 225 VVGEHIGLAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLFVAQGHDHPWLLSHTL 284
Query: 132 HAGSLKLLSGLPPEK------ISQLHSVFYNCSL-TIEHCEDGGEDIAVVQLSEDDQGLA 184
AG++ ++G PP + ++ C+ + GED+ + E +
Sbjct: 285 TAGNVSWVAGEPPPEGFACGAKTRYRQADARCTFRSASGATTNGEDLFELTFDEAQWAVT 344
Query: 185 AGQFAAFYQGRRCLGSGVILEA 206
GQ A Y G CLG G+I A
Sbjct: 345 PGQSAVLYDGDVCLGGGIIEHA 366
>gi|345863844|ref|ZP_08816051.1| tRNA-specific 2-thiouridylase MnmA [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345124954|gb|EGW54827.1| tRNA-specific 2-thiouridylase MnmA [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 365
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 103/254 (40%), Gaps = 61/254 (24%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYP 59
A+S++ +A+GHYA ++ S+ +++ + +V KDQTYFL L Q QL R F L
Sbjct: 115 ALSTLGASRIATGHYARLIESNGEYQLQRAVDENKDQTYFLYMLGQPQLSRSYFPLGSLA 174
Query: 60 RLTI------------------------------------PMEGIILEAETGDFLEKHRG 83
+ + P ++ G+ + +H G
Sbjct: 175 KTQVRELAEKAGFSNHKKKDSTGICFIGERKFRDFLSRYLPANPGAIQTPEGETIGQHSG 234
Query: 84 FWFYTIGQHQELGLLYI-----VYRYVVEKDIENNIVFVSRNY-YSFDKKRHLFHAGSLK 137
+YT+GQ Q LG+ I +VV KD++ N++ V++ + + R L AG L
Sbjct: 235 LMYYTLGQRQGLGIGGIKGTAEAPWFVVAKDLQRNLLIVAQGHQHPLLMSRSLV-AGQLH 293
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEH--------CEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ P+ + +C I H E G+D V + + GQ
Sbjct: 294 WIGARTPQ-------LPLSCKARIRHRQPLQSCWIEAQGKDGCRVHFDTPQRAVTPGQSI 346
Query: 190 AFYQGRRCLGSGVI 203
FY G CLG +I
Sbjct: 347 VFYSGPNCLGGAII 360
>gi|398807521|ref|ZP_10566398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Variovorax sp. CF313]
gi|398089279|gb|EJL79802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Variovorax sp. CF313]
Length = 355
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 105/261 (40%), Gaps = 59/261 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDK------PSVKDQTYFLSHLSQAQLRRLIF- 53
+D + + +A+GHYA V + + + PS KDQ+YFL L+QAQL + +F
Sbjct: 97 LDHAMRLGAEKIATGHYARVRLNEGTGRHELLKGLDPS-KDQSYFLHRLNQAQLSKTLFP 155
Query: 54 ----HLVLYPRLT-------------------------------IPMEGIILEAETGDFL 78
H R+ I E ++ + G L
Sbjct: 156 VGELHKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISKEPGPIKDDRGRKL 215
Query: 79 EKHRGFWFYTIGQHQELGLLYIVYR------------YVVEKDIENNIVFVSRNYYSFDK 126
+H+G FYT+GQ Q LG+ + R +V KD+E N ++V + +
Sbjct: 216 GEHQGLSFYTLGQRQGLGIGGVKERGAQRGSGDHSPWFVARKDVEKNTLWVVQGHDHPWL 275
Query: 127 KRHLFHAGSLKLLSGLPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGL 183
+ A +SG PP S Y + + ++ ED G A+ + E +
Sbjct: 276 QSSALKADDASWVSGEPPAPGSYGSKARYRQADAACEMDAGEDSGAAFAL-RFGEPQWAV 334
Query: 184 AAGQFAAFYQGRRCLGSGVIL 204
GQ A Y G RCLG GVI+
Sbjct: 335 TPGQSAVLYDGERCLGGGVIV 355
>gi|405972098|gb|EKC36885.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Crassostrea gigas]
Length = 392
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 105/264 (39%), Gaps = 71/264 (26%)
Query: 3 AISSMEFDYVASGHYA------NVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRL 51
A+ D +A+GHYA N++ + + K KDQT+FLS +SQ LR++
Sbjct: 118 AMKQFSADAMATGHYARTSVGENLLLGDSSQGVRLLRAKDIWKDQTFFLSQISQQALRKV 177
Query: 52 IFHLVLYPRLTI--------------------------------------PMEGIILEAE 73
+F L + + P G I+ E
Sbjct: 178 LFPLGELKKSEVKRIASEIGLQRIAKKKESMGICFVGKRDFPSFIGQYLEPKPGNIIHVE 237
Query: 74 TGDFLEKHRGFWFYTIGQ------HQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKK 127
TG+ + H+G YT+GQ H G YIV + + +DI I+ N+ S +
Sbjct: 238 TGEVVGTHQGIHHYTLGQKLIHVNHGRFGKCYIVDKNNITQDI---IIAPGTNHPSLFNQ 294
Query: 128 RHLFHAGSLKLLSGLPPE----KISQLHS----VFYNCSLTIEHCEDGGEDIAVVQLSED 179
F A + PP ++ +L + + T+ C GED +V L E
Sbjct: 295 E--FFAKVPSWICEEPPGFSDGRVCRLQCRIQRIEASIPCTVSRC---GEDQVIVTLEEP 349
Query: 180 DQGLAAGQFAAFYQGRRCLGSGVI 203
+ + GQ+ FY G CLGSGVI
Sbjct: 350 LRAITPGQYGVFYDGEECLGSGVI 373
>gi|238853983|ref|ZP_04644340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus gasseri 202-4]
gi|238833428|gb|EEQ25708.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus gasseri 202-4]
Length = 375
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 102/269 (37%), Gaps = 71/269 (26%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A GHYA +VH + K KDQTYFLS LSQ QL+++IF
Sbjct: 113 LDFAMDLDADYIAMGHYAATKVDENGIVHM---MRPKDGNKDQTYFLSQLSQDQLKKVIF 169
Query: 54 HLV-----------LYPRLT-------------------------IPMEGIILEAETGDF 77
L +Y L +P + + G
Sbjct: 170 PLANLTKPQVREIAIYAGLATAKKKDSTGICFIGERNFKKFLSEFLPAQSGKMVTPDGKV 229
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ +H G +YTIGQ LGL +VV KD++ N + V + Y S A
Sbjct: 230 VGEHAGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDA 289
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQ 181
+ +G P H + C+ + + D+ V V+ E +
Sbjct: 290 SGVSFFTGQPE------HDIDLKCTAKFRYRQ---PDVGVTMHYHAKDNTVHVEFDEPAR 340
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDDQ 210
+ GQ FY G CLG I A+ ++
Sbjct: 341 AVTPGQAIVFYNGEECLGGATIDRAYQNE 369
>gi|431899581|gb|ELK07544.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Pteropus alecto]
Length = 466
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 109/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H +P S+KDQ
Sbjct: 163 ALDNLGADAVATGHYARTSREDEEVFQQKHIKRPEGLFRNRFEVRNATKLLQAADSLKDQ 222
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FL +SQ LRR +F H VL + ++
Sbjct: 223 TFFLGQVSQDALRRALFPLGGLTKDFVKKIAAENRLHHVLQRKESMGICFVGKRNFENFI 282
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++G L + YV EKD VFV+
Sbjct: 283 LQYLQPRPGRFISIEDNRVLGTHKGWFLYTLGQRAKIGGLREPW-YVAEKDGGRGDVFVA 341
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 342 PGTDHPALFRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 399
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ + L GQFA FY+G CLGSG IL
Sbjct: 400 TVWVTAVRPV---RALTPGQFAVFYKGDECLGSGKILR 434
>gi|300703072|ref|YP_003744674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum CFBP2957]
gi|299070735|emb|CBJ42030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum CFBP2957]
Length = 370
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 101/256 (39%), Gaps = 61/256 (23%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + + DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLKAFDH-----TKDQSYFLHRLNQAQLSRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTRVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPEGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KD+ N ++V + + H
Sbjct: 225 TIGQHIGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
HA L ++G PP + + L + + T+ DG +A V E + GQ
Sbjct: 285 HADDLSWVAGHPPAEGTHLAAKTRYRQADAPCTVACATDGALALAFV---EAQWAVTPGQ 341
Query: 188 FAAFYQGRRCLGSGVI 203
A Y G CLG G+I
Sbjct: 342 SAVLYDGEVCLGGGII 357
>gi|386043823|ref|YP_005962628.1| tRNA methyl transferase [Listeria monocytogenes 10403S]
gi|404410813|ref|YP_006696401.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC5850]
gi|345537057|gb|AEO06497.1| tRNA methyl transferase [Listeria monocytogenes 10403S]
gi|404230639|emb|CBY52043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes SLCC5850]
Length = 371
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV K+++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKNLKENVLFVEQGFHHETLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDVCLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|373461294|ref|ZP_09553036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella maculosa OT 289]
gi|371952848|gb|EHO70681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella maculosa OT 289]
Length = 366
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 106/249 (42%), Gaps = 61/249 (24%)
Query: 9 FDYVASGHYANV--VHSSADHKDKPS-VKDQTYFLSHLSQAQLRRLIF------------ 53
+D +A+GHYA ++ P VKDQT FL+ + QLR+ +F
Sbjct: 123 YDLIATGHYAQTEWINGRKWLTTSPDPVKDQTDFLAQIEGWQLRKALFPIGHFEKNEVRE 182
Query: 54 -----HLV-------------------LYPRLTIPME-GIILEAETGDFLEKHRGFWFYT 88
HL+ Y R + + G ++E ETG + H+G WF+T
Sbjct: 183 IAEREHLINAKRRDSQGICFLGNIDYNEYVRRYLGEQVGDVIELETGKKIGTHKGLWFHT 242
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGLP 143
IGQ + LG + +VV+KD+ NI++VS Y Y H FHA +
Sbjct: 243 IGQRKGLGFGGGPW-FVVKKDVAQNILYVSHGYDPATAYKQTFNVHDFHA------TTYC 295
Query: 144 PEKISQLH---SVFYNCSLTIEH----CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR- 195
P+ ++Q V + T E+ E G++ ++ G+A GQF Y R
Sbjct: 296 PDGVAQPELPLRVTFKIRHTPEYLPAAIEQTGDNTYMIHADSKVHGVAPGQFCVVYDERH 355
Query: 196 -RCLGSGVI 203
RC GSG I
Sbjct: 356 HRCYGSGEI 364
>gi|347753083|ref|YP_004860648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus coagulans 36D1]
gi|347585601|gb|AEP01868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus coagulans 36D1]
Length = 371
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 103/245 (42%), Gaps = 47/245 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DY+A+GHYA V H ++K V KDQTYFL+ L Q QL R++F + + PR+
Sbjct: 123 DYLATGHYARVTHQDGEYKMLRGVDGNKDQTYFLNQLGQYQLSRVMFPIGDLEKPRVREI 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ G + +H G +YTIG
Sbjct: 183 AKEAGLATANKKDSTGICFIGERNFKEFLSHYLPAQKGLMKTLDGKVMGEHEGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V KD++ N+++V + ++ +SG P ++ +
Sbjct: 243 QRHGLGIGGSGEPWFAVGKDLKENVLYVEQGFHHPALYSDYMTGVKANWVSGKKPPEVFR 302
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ G D V E + + GQ FY G CLG I +
Sbjct: 303 CTAKFRYRQPDQKVTVQLL---GNDEVKVIYDEPVRAVTPGQAVVFYNGEECLGGATIDK 359
Query: 206 AWDDQ 210
+ ++
Sbjct: 360 IYKNE 364
>gi|345879827|ref|ZP_08831393.1| tRNA methyl transferase [Prevotella oulorum F0390]
gi|343918894|gb|EGV29652.1| tRNA methyl transferase [Prevotella oulorum F0390]
Length = 371
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 105/256 (41%), Gaps = 73/256 (28%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF------ 53
++ ++A+GHYA + +S D VKDQT FL+ + QL++ +F
Sbjct: 127 DYAFIATGHYAQTEWIDGCKWLTTSPD-----PVKDQTDFLAQIYSWQLQKAVFPIGHFV 181
Query: 54 -----------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHR 82
HL+ R G I+E ET + +HR
Sbjct: 182 KDEVREVAEREHLINARRKDSQGICFLGNINYNEYIERYLGEAPGDIVEWETHQRIGRHR 241
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLK 137
G WF+TIGQ + LGL + +VV+KD+E N ++VS Y Y + H FHA +
Sbjct: 242 GLWFHTIGQRKGLGLGGGPW-FVVKKDMEQNTLYVSHGYDPETAYQQQFRVHDFHATTYC 300
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEHCED--------GGEDIAVVQLSEDDQGLAAGQFA 189
PE ++Q ++ I H D GE ++ G+A GQF
Sbjct: 301 ------PEGMAQP-TLPARIRFKIRHTPDYLPARLEPTGEGSFILHADAKIHGVAPGQFC 353
Query: 190 AFYQGR--RCLGSGVI 203
Y R RC GSG I
Sbjct: 354 VIYDERHHRCFGSGEI 369
>gi|387928709|ref|ZP_10131387.1| tRNA-specific 2-thiouridylase MnmA [Bacillus methanolicus PB1]
gi|387588295|gb|EIJ80617.1| tRNA-specific 2-thiouridylase MnmA [Bacillus methanolicus PB1]
Length = 370
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 43/246 (17%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+D S++ DYVA+GHYA V + + + K S KDQ+YFLS L+ QL ++IF L
Sbjct: 111 IDFALSLDADYVATGHYARVNRENGEVTLLRGKDSNKDQSYFLSQLTGEQLSKVIFPLGE 170
Query: 56 ----------------------------------VLYPRLTIPMEGIILEAETGDFLEKH 81
+ + +P + + + G+ L +H
Sbjct: 171 LTKDEVRKIAKEINLSTANKKDSTGICFIGERNFKSFLKNFLPAQPGEIRSIIGEVLGQH 230
Query: 82 RGFWFYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
G +YTIGQ + LG+ +VV+KD++NN++ V++ + + A ++
Sbjct: 231 DGLMYYTIGQRKGLGIGGKGAPEPWFVVDKDLDNNVLIVAQGKDNPALYSNGIIAANISF 290
Query: 139 LSG-LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
++G P S Y + A+V+ + + + GQ A FY C
Sbjct: 291 INGDYSPRSFSCTAKFRYRQEDQKVKVHVRPDRTALVEYEQPIKAVTPGQVAVFYDQDVC 350
Query: 198 LGSGVI 203
LGSG+I
Sbjct: 351 LGSGII 356
>gi|42518912|ref|NP_964842.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus johnsonii NCC
533]
gi|417837772|ref|ZP_12484010.1| tRNA -methyltransferase [Lactobacillus johnsonii pf01]
gi|73920127|sp|Q74JW9.1|MNMA_LACJO RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|41583198|gb|AAS08808.1| probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus johnsonii NCC 533]
gi|338761315|gb|EGP12584.1| tRNA -methyltransferase [Lactobacillus johnsonii pf01]
Length = 375
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 103/269 (38%), Gaps = 71/269 (26%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A GHYA VVH + K KDQTYFLS LSQ QL+++IF
Sbjct: 113 LDFAMDLDADYIAMGHYAATRVDDNGVVHM---MRPKDGNKDQTYFLSQLSQDQLKKVIF 169
Query: 54 HL--VLYPRLT----------------------------------IPMEGIILEAETGDF 77
L + P++ +P + + G
Sbjct: 170 PLANLTKPQVREIAIASGLATAKKKDSTGICFIGERNFKKFLSEFLPAQSGKMVTPDGKV 229
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ +H G +YTIGQ LGL +VV KD++ N + V + Y S A
Sbjct: 230 VGEHAGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDA 289
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQ 181
+ +G P H V C+ + + D+ V V+ E +
Sbjct: 290 SGVSFFTGQPD------HDVDLKCTAKFRYRQ---PDVGVTMHYRAKDNTVHVEFDEPAR 340
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDDQ 210
+ GQ FY G CLG I A+ ++
Sbjct: 341 AVTPGQAIVFYNGEECLGGATIDRAYQNE 369
>gi|385826098|ref|YP_005862440.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus johnsonii DPC 6026]
gi|329667542|gb|AEB93490.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus johnsonii DPC 6026]
Length = 375
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 103/269 (38%), Gaps = 71/269 (26%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A GHYA VVH + K KDQTYFLS LSQ QL+++IF
Sbjct: 113 LDFAMDLDADYIAMGHYAATRVDDNGVVHM---MRPKDGNKDQTYFLSQLSQDQLKKVIF 169
Query: 54 HL--VLYPRLT----------------------------------IPMEGIILEAETGDF 77
L + P++ +P + + G
Sbjct: 170 PLANLTKPQVREIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLPAQSGKMVTPDGKV 229
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ +H G +YTIGQ LGL +VV KD++ N + V + Y S A
Sbjct: 230 VGEHAGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDA 289
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQ 181
+ +G P H V C+ + + D+ V V+ E +
Sbjct: 290 SGVSFFTGQPD------HDVDLKCTAKFRYRQ---PDVGVTMHYRAKDNTVHVEFDEPAR 340
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDDQ 210
+ GQ FY G CLG I A+ ++
Sbjct: 341 AVTPGQAIVFYNGEECLGGATIDRAYQNE 369
>gi|268319690|ref|YP_003293346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus johnsonii FI9785]
gi|262398065|emb|CAX67079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus johnsonii FI9785]
Length = 375
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 103/269 (38%), Gaps = 71/269 (26%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A GHYA VVH + K KDQTYFLS LSQ QL+++IF
Sbjct: 113 LDFAMDLDADYIAMGHYAATRVDDNGVVHM---MRPKDGNKDQTYFLSQLSQDQLKKVIF 169
Query: 54 HL--VLYPRLT----------------------------------IPMEGIILEAETGDF 77
L + P++ +P + + G
Sbjct: 170 PLANLTKPQVREIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLPAQSGKMVTPDGKV 229
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ +H G +YTIGQ LGL +VV KD++ N + V + Y S A
Sbjct: 230 VGEHAGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVDQGYDSKLLYATSLDA 289
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQ 181
+ +G P H V C+ + + D+ V V+ E +
Sbjct: 290 SGVSFFTGQPD------HDVDLKCTAKFRYRQ---PDVGVTMHYRAKDNTVHVEFDEPAR 340
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDDQ 210
+ GQ FY G CLG I A+ ++
Sbjct: 341 AVTPGQAIVFYNGEECLGGATIDRAYQNE 369
>gi|445114474|ref|ZP_21377936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella nigrescens F0103]
gi|444840703|gb|ELX67729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella nigrescens F0103]
Length = 376
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 102/267 (38%), Gaps = 70/267 (26%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
D ++D +A+GHYA + +S D VKDQT FL+ + QLR+ I
Sbjct: 114 FDEKCGHDYDLIATGHYAQTKWIDGKKWLCTSPD-----PVKDQTDFLAQIYDWQLRKAI 168
Query: 53 FHLVLYPRLTI-------------------------------------PMEGIILEAETG 75
F + Y + + G ++E ETG
Sbjct: 169 FPIGHYEKNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQAGDVVELETG 228
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+ +H+G WF+TIGQ + LG + +VV+KD+ N++FVS Y + F
Sbjct: 229 RKIGQHKGLWFHTIGQRKGLGFGGGPW-FVVKKDVAANVLFVSHGYDPETAYKKDFKVHG 287
Query: 136 LKLLSGLP-PEKISQLHSVFYNCSLT--IEHCE--------------DGGEDIAVVQLSE 178
L L+ P PE + S+ I H DG A+V +
Sbjct: 288 LHWLTETPRPEAGGSDAKTYRQISICFKIRHTPEFHKGYLELLPANGDGEPTEAIVHSED 347
Query: 179 DDQGLAAGQFAAFYQG--RRCLGSGVI 203
G+A GQF Y RC GS I
Sbjct: 348 KIHGVAPGQFCVIYDKDHNRCFGSAEI 374
>gi|392954438|ref|ZP_10319989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Hydrocarboniphaga effusa AP103]
gi|391857095|gb|EIT67626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Hydrocarboniphaga effusa AP103]
Length = 361
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 67/254 (26%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL---------V 56
D+VA+GHYA + HS+AD + KDQTYFL+ +++ Q +++F +
Sbjct: 119 DFVATGHYAQLDHSAADGPRLLRSVTEDKDQTYFLALVARRQFEKVLFPIGGLTKPEVRA 178
Query: 57 LYPRLTIP------MEGI--ILEAETGDFLE-------------------KHRGFWFYTI 89
L + +P GI I E E FL+ +H+G +YT+
Sbjct: 179 LAAKAGLPNHRKKDSTGICFIGEREFRSFLQHYLKPNPGPMIDDAGAVVGQHQGLMYYTL 238
Query: 90 GQHQELGLLYI-----VYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
GQ + L + + +VV KD NN++ VS+ D L + +L+ LP
Sbjct: 239 GQRKGLAIGGVRGAREAPWFVVAKDQPNNVLRVSQ-----DGAHPLLMS---NVLTTLPF 290
Query: 145 EKISQLHSVFYNCSLTIEH-----------CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
E I Q + I H EDGG V+ + + +AAGQF Y
Sbjct: 291 EWIRQPSPLPERLHARIRHRQILQACLVRVAEDGG---VQVRFEQAQRAIAAGQFCVLYD 347
Query: 194 GRRCLGSGVILEAW 207
G+ CLG G I A+
Sbjct: 348 GQECLGGGEIAGAF 361
>gi|390952705|ref|YP_006416464.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Thiocystis violascens DSM 198]
gi|390429274|gb|AFL76339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiocystis violascens DSM 198]
Length = 376
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 105/265 (39%), Gaps = 63/265 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSS-ADHKD--KPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D + D +A+GHYA V H H + KDQTYFL L QAQL R +F L
Sbjct: 120 LDHALGLGADAIATGHYARVTHDDRGSHLALCQDGEKDQTYFLHLLDQAQLARSLFPLHD 179
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
++ + P E +E G L +H
Sbjct: 180 LTKIEVRTIARAIGLANAEKKDSTGICFIGERRFRDFLAQYLPREPGPIETLEGVILGEH 239
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIE-NNIVFVSRNYYSFDKKRHLFHAGS 135
+G +YTIGQ Q LG+ + YV KD E N ++ V +++ L G
Sbjct: 240 QGLAYYTIGQRQGLGVGGVTSGREAPWYVAAKDAERNRLILVQDSHHP-----RLMSRG- 293
Query: 136 LKLLSGLPPEKIS-QLHSVFYNCSLTIEH------CED-GGEDIAV-VQLSEDDQGLAAG 186
LSGLPP I+ + + C + H CE +D+ V+ E + + G
Sbjct: 294 ---LSGLPPHWIAGRAPDLPLRCQARLRHRQPLQACEVLNADDLGCQVRFLEPQRAVTPG 350
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQG 211
Q FY+ CLG VI + W G
Sbjct: 351 QSIVFYRDGVCLGGAVIDQGWSASG 375
>gi|395820218|ref|XP_003783471.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Otolemur
garnettii]
Length = 417
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 109/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYAN--------------------------VVHSSADHKDKPSVKDQ 36
A+ ++ D +A+GHYA V H+ + S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRHAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRKFERFI 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++ L + YVVEKD VFV+
Sbjct: 234 LQYLPPRPGKFISIEDNTVLGTHKGWFLYTLGQKAKISGLNEPW-YVVEKDGAKGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + F + C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTSRVHWIAEEPPAQLVRDKMMECQFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVKAV---RALALGQFAVFYRGDECLGSGKILR 385
>gi|83746745|ref|ZP_00943793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum UW551]
gi|207744291|ref|YP_002260683.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum IPO1609]
gi|83726514|gb|EAP73644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum UW551]
gi|206595696|emb|CAQ62623.1| probable trna
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum IPO1609]
Length = 370
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 61/256 (23%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + + DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLKAFDH-----TKDQSYFLHRLNQAQLSRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTRVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPEGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KD+ N ++V + + H
Sbjct: 225 TIGQHIGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
HA L ++G PP + + L + + T+ DG +A +E + GQ
Sbjct: 285 HADDLSWVAGHPPAEGTHLAAKTRYRQADAPCTVAGATDGALALA---FTEAQWAVTPGQ 341
Query: 188 FAAFYQGRRCLGSGVI 203
A Y G CLG G+I
Sbjct: 342 SAVLYDGEVCLGGGII 357
>gi|339483654|ref|YP_004695440.1| tRNA-specific 2-thiouridylase mnmA [Nitrosomonas sp. Is79A3]
gi|338805799|gb|AEJ02041.1| tRNA-specific 2-thiouridylase mnmA [Nitrosomonas sp. Is79A3]
Length = 359
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 61/258 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV- 56
+D ++ D +A+GHYA V K + KDQ+YFL L+Q QL +F +
Sbjct: 110 LDHAHKLDADCIATGHYAQVRKVGGVFQLLKGEDGTKDQSYFLYRLNQTQLASTLFPIGH 169
Query: 57 LYPRLT-----------------------------------IPMEGIILEAETGDFLEKH 81
LY R +P E ++ G + +H
Sbjct: 170 LYKREVRKIAKQLKLPNFSKKDSTGICFIGERPFREFLNRYLPHESGEIQTPEGKVIGQH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +YTIGQ Q LG+ +V KD+ NI+ V + + D R A L
Sbjct: 230 IGLMYYTIGQRQGLGIGGTRDGSDEPWFVSAKDMSRNILVVVQGHNHPDLLRPSLKAADL 289
Query: 137 KLLSGLPP---------EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
+SG P + Q+ + +LT +HC+ V ++D + GQ
Sbjct: 290 TWISGKQPHCNWVYAAKTRYRQVDAPCTITNLTQDHCQ--------VDFAQDQWAITPGQ 341
Query: 188 FAAFYQGRRCLGSGVILE 205
Y+ + CLG G+I+E
Sbjct: 342 SVVIYESKVCLGGGIIIE 359
>gi|417002144|ref|ZP_11941533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus prevotii ACS-065-V-Col13]
gi|325479285|gb|EGC82381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 367
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 111/255 (43%), Gaps = 52/255 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D S+ DYVA+GHYA S+ + + + KDQTYFLS LSQ Q++ ++F +
Sbjct: 113 LDFAKSLGADYVATGHYARADRSNGETVMLRGVDNNKDQTYFLSQLSQEQIKDVLFPVGE 172
Query: 58 YPRLTI------------------------------------PME-GIILEAETGDFLEK 80
+ + + P + G I++ E G L K
Sbjct: 173 FEKKEVREIAHKYNLATADKKDSTGICFIGERDFNEFLSNYLPAQPGNIVDTE-GHILGK 231
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSR---NYYSFDKKRHLFHAGSL 136
H G F+TIGQ + LG+ +V KD++NN + V + N F K +A
Sbjct: 232 HDGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKNNELIVCQGRNNPLLFSNK---LYASEF 288
Query: 137 KLLSGLP-PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD-QGLAAGQFAAFYQG 194
+S PE+ Y H + GE V+++ D + + GQ A FYQG
Sbjct: 289 STISDKKCPEEFDCTAKFRYRQKDINAHVKVLGE--GKVEVTYDKTKAVTPGQAAVFYQG 346
Query: 195 RRCLGSGVILEAWDD 209
CLGS +I E ++D
Sbjct: 347 EVCLGSAIIDEVYND 361
>gi|299065725|emb|CBJ36899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia solanacearum CMR15]
Length = 370
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 98/253 (38%), Gaps = 55/253 (21%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + + DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLKAFDH-----TKDQSYFLHRLNQAQLSRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + + G
Sbjct: 165 FPLSEMPKTRVREIAAEIGLPNARKKDSTGICFIGERPFRDFLNRYLPTQPGPIRTPDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KD+ N ++V++ + H
Sbjct: 225 TIGQHIGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHS-VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
HA L ++G PP + +QL + Y + D + + + GQ A
Sbjct: 285 HADDLSWVAGHPPAEGTQLAAKTRYRQADAPCAVTSASGDALTLTFEQAQWAVTPGQSAV 344
Query: 191 FYQGRRCLGSGVI 203
Y G CLG G+I
Sbjct: 345 LYDGDICLGGGII 357
>gi|315303264|ref|ZP_07873908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria ivanovii FSL F6-596]
gi|313628376|gb|EFR96865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria ivanovii FSL F6-596]
Length = 371
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 101/246 (41%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ D+VA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADFVATGHYAQVKQVGDEIELLRGVDNNKDQTYFLNQLSQEQLQKVMFPLGGMEKSE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + ++ G+ L KH G +
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGKMQTLNGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD+ NI+FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLTENILFVEQGFHHETLYSDSLIATDISFTTNAAKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ H D ++ A V +E + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTV-HLRD--DNTAEVVFAEPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|71030526|ref|XP_764905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Theileria parva strain Muguga]
gi|68351861|gb|EAN32622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
putative [Theileria parva]
Length = 693
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 110/283 (38%), Gaps = 96/283 (33%)
Query: 9 FDYVASGHYANVVHS--SADHKDKPS-----------------------VKDQTYFLSHL 43
FDYVASGHYA + + + PS +KDQTYFLS L
Sbjct: 410 FDYVASGHYATLCDDFFTKEQIKSPSSLNGSTSINGYYKIKRLCLSNDTLKDQTYFLSRL 469
Query: 44 SQAQLRRLIF---HLV------LYPRLTIPM----------------------------E 66
+Q Q+ +LIF HL + +P +
Sbjct: 470 TQNQMSKLIFPIGHLTKSQVREFAKTVGLPTFDKKDSFGLCFLEDLDISQYLTKSLGESQ 529
Query: 67 GIILEAETGDFLEKHRGFWFYTIGQHQELGLLY------IVYRYVVEKDIENNIVFVSRN 120
G I+E ET + H G + +TIGQ + + +YVV+KDI N ++VS N
Sbjct: 530 GPIVEYETNKVIGTHNGLYNFTIGQKKTINSFLNPKHVGSTPKYVVKKDIATNTLYVSSN 589
Query: 121 Y------------YSFDKKRHLFHAGSLK-LLSGLPPE--------KISQLHSVFYN-CS 158
Y SF K ++ K L++ + E K+ H+ Y+ C+
Sbjct: 590 YNDDFYTNPKGIRSSFKVKDMFWNVPDYKELINKIQSEGSDDNFKFKVKLRHTPNYSQCA 649
Query: 159 LTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ DG E A V L D G++ GQ+ FY C+GS
Sbjct: 650 INF----DGDE--ATVFLKHPDTGISTGQYCVFYADNYCIGSA 686
>gi|85860332|ref|YP_462534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Syntrophus aciditrophicus SB]
gi|123517346|sp|Q2LWA6.1|MNMA1_SYNAS RecName: Full=tRNA-specific 2-thiouridylase MnmA 1
gi|85723423|gb|ABC78366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Syntrophus aciditrophicus SB]
Length = 372
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 98/248 (39%), Gaps = 50/248 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV- 56
+D+ +M FDY+A+GHYA + + K K VKDQTYFL + A L ++F L
Sbjct: 128 LDSARTMGFDYLATGHYAKIERKESRWILKKAKDLVKDQTYFLYPIPVAALEHILFPLAD 187
Query: 57 -------------LYPRLTIPME------------------------GIILEAETGDFLE 79
L P P G I++ +G L
Sbjct: 188 RTKDEVREIARQALLPIAEKPESQDLCFVTQDSYRDFLQEQGCPVHPGPIVD-RSGRVLG 246
Query: 80 KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
+H G FYTIGQ LG+ YVV D+ N V VS D AG + L
Sbjct: 247 EHSGTVFYTIGQRHGLGISSPFPLYVVAIDVAGNSVIVSGKE---DVYAQGLVAGEMNWL 303
Query: 140 SG-LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
+ P E +++ CS I +G D V +ED + GQ YQ L
Sbjct: 304 TPERPQEAEARIRHRKRTCSCRI--VPEG--DRIRVYFAEDQDAVTPGQAVVLYQEDEVL 359
Query: 199 GSGVILEA 206
G GVI EA
Sbjct: 360 GGGVIEEA 367
>gi|157693155|ref|YP_001487617.1| tRNA-specific 2-thiouridylase MnmA [Bacillus pumilus SAFR-032]
gi|194017112|ref|ZP_03055724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus pumilus ATCC 7061]
gi|166991121|sp|A8FFP0.1|MNMA_BACP2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|157681913|gb|ABV63057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus pumilus SAFR-032]
gi|194010980|gb|EDW20550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus pumilus ATCC 7061]
Length = 372
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 57/254 (22%)
Query: 6 SMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIF--------- 53
S+ DY+A+GHYA V + + K + KDQTYFL+ L+Q QL +++F
Sbjct: 119 SLGADYLATGHYARVDRTGDEVKMLRGLDANKDQTYFLNQLTQEQLDKVMFPIGDLEKKR 178
Query: 54 ---------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWF 86
+ + +P + +++ G+ +H G +
Sbjct: 179 VRELAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGVMQTMDGEVKGEHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL--LSGLP 143
YTIGQ Q LG+ +VV KD+E NI+FV + +++ L ++ S+ +S
Sbjct: 239 YTIGQRQGLGIGGSGDPWFVVGKDLEQNILFVEQGFHN-----PLLYSESISAVNISWTR 293
Query: 144 PEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
P + + + C+ + ++ GE A+V E + + GQ FY G
Sbjct: 294 PHIVGENGEL--TCTAKFRYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFYDGD 351
Query: 196 RCLGSGVILEAWDD 209
CLG G I + + D
Sbjct: 352 ECLGGGTIDDVFKD 365
>gi|348552362|ref|XP_003461997.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Cavia
porcellus]
Length = 421
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 109/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ S+ D VA+GHYA + H +P S KDQ
Sbjct: 114 AMGSLGADAVATGHYARTSLEDEEVFQQKHVKRPEGLFQNRFEVRNPVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIFHL-------------------VLYPRLTI-------------- 63
T+FLS +SQ LRR IF L VL + ++
Sbjct: 174 TFFLSQVSQEALRRTIFPLGGLTKGFVKKIAAENGLQHVLQKKESMGICFIGKRNFEHFI 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++ L + +VV+KD V V+
Sbjct: 234 LQYLQPRPGRFISIEDNTVLGTHQGWFLYTLGQRAKISGLREPW-FVVDKDSTKGDVLVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTNRVHWIAEEPPAILVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ +GL GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVKAV---RGLTLGQFAVFYKGDECLGSGKILR 385
>gi|293364049|ref|ZP_06610785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma alligatoris A21JP2]
gi|292552539|gb|EFF41313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma alligatoris A21JP2]
Length = 372
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 104/257 (40%), Gaps = 64/257 (24%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
A + ++ DY+A GHYANVV +K K KDQTYFL+ LS QL+ +I L +
Sbjct: 123 AFNELKADYIAMGHYANVVDGRL-YKAKDENKDQTYFLAQLSHEQLKNVIMPLANLEKTQ 181
Query: 63 I-------------------------------------PMEGIILEAETGDFLEKHRGFW 85
I EG ++ T + KH G +
Sbjct: 182 IRKIALELNLATAKKKDSTGICFIGERNFTKFLQNYIPAHEGDVVNIITKQKIAKHIGCF 241
Query: 86 FYTIGQHQELGLL-YIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL--SGL 142
+YTIGQ + L L YV D+ NI++V+ A S + L + L
Sbjct: 242 YYTIGQRKGLNLGGNSEPHYVCGHDVLKNILYVAP-------------ASSPEFLDSNSL 288
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSED----------DQGLAAGQFAAFY 192
++ H F ++T++ E A+V+ ED Q + GQ Y
Sbjct: 289 IASNLTLNHQNFNKENITVKFRYRQQEIKAIVEFLEDKKVKIIYNSKSQAVTPGQQVVLY 348
Query: 193 QGRRCLGSGVILEAWDD 209
+G++CLG +I E + D
Sbjct: 349 EGQKCLGGAIIEEVFMD 365
>gi|420148396|ref|ZP_14655664.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus gasseri CECT
5714]
gi|398399948|gb|EJN53544.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus gasseri CECT
5714]
Length = 383
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 103/269 (38%), Gaps = 71/269 (26%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A GHYA +VH + K KDQTYFLS LSQ QL+++IF
Sbjct: 121 LDFAMDLDADYIAMGHYAATKVDENGIVHM---MRPKDGNKDQTYFLSQLSQDQLKKVIF 177
Query: 54 HL--VLYPRLT----------------------------------IPMEGIILEAETGDF 77
L + P++ +P + + G
Sbjct: 178 PLANLTKPQVREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLPAQSGKMVTSDGKV 237
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ +H G +YTIGQ LGL +VV KD++ N + V + Y S A
Sbjct: 238 VGEHAGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDA 297
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQ 181
+ +G P H + C+ + + D+ V V+ E +
Sbjct: 298 SGVSFFTGQPE------HDIDLKCTAKFRYRQ---PDVGVTMHYHAKDNTVHVEFDEPAR 348
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDDQ 210
+ GQ FY G CLG I A+ ++
Sbjct: 349 AVTPGQAIVFYNGEECLGGATIDRAYQNE 377
>gi|304317430|ref|YP_003852575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778932|gb|ADL69491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 372
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 104/244 (42%), Gaps = 58/244 (23%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---HLVLYPRLTI 63
DY+A+GHYA + +S+ ++ V KDQTYFL L Q QL + IF HL + I
Sbjct: 123 DYIATGHYARIEYSNGKYRMLKGVDKNKDQTYFLCELGQKQLSKTIFPIGHLNKFEVREI 182
Query: 64 PME------------GIILEAE---------------------TGDFLEKHRGFWFYTIG 90
+ GI E +G L KH G FYT+G
Sbjct: 183 ARKAGLKTADKKDSTGICFIGERKFKEFLNQFLPAKPGEIRDLSGRVLGKHDGLMFYTLG 242
Query: 91 QHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
Q + LG+ I +VV+KD+ENNI++V++ +K L+ S L +
Sbjct: 243 QRRGLGIGGIGTGEPWFVVDKDVENNILYVAQG----EKNPALY---SYALFTKDVNWID 295
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAV--------VQLSEDDQGLAAGQFAAFYQGRRCLG 199
+ + + + C + +D+ V V + + + GQF FY G CLG
Sbjct: 296 NSIEADTFRCKAKFRY-RQPDQDVTVYAKDDGYFVVFDKPQRAVTPGQFVVFYDGEYCLG 354
Query: 200 SGVI 203
GVI
Sbjct: 355 GGVI 358
>gi|407980707|ref|ZP_11161484.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. HYC-10]
gi|407412515|gb|EKF34307.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. HYC-10]
Length = 372
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 109/254 (42%), Gaps = 57/254 (22%)
Query: 6 SMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIF--------- 53
S+ DY+A+GHYA + + + K + KDQTYFL+ L+Q QL +++F
Sbjct: 119 SLGADYLATGHYARIDRTGDEVKMLRGLDANKDQTYFLNQLTQEQLDKVMFPIGDLEKKR 178
Query: 54 ---------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWF 86
+ + +P + +++ G+ +H G +
Sbjct: 179 VRELAKEAGLATATKKDSTGICFIGERNFKTFLSQYLPAQPGVMQTMDGEVKGEHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL--LSGLP 143
YTIGQ Q LG+ +VV KD+E NI+FV + +++ L ++ S+ +S
Sbjct: 239 YTIGQRQGLGIGGSGDPWFVVGKDLEKNILFVEQGFHN-----PLLYSESISAVNISWTR 293
Query: 144 PEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
P + + + C+ + ++ GE A+V E + + GQ FY G
Sbjct: 294 PHIVDENGEL--TCTAKFRYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFYDGE 351
Query: 196 RCLGSGVILEAWDD 209
CLG G I + + D
Sbjct: 352 ECLGGGTIDDVFKD 365
>gi|386332447|ref|YP_006028616.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum Po82]
gi|334194895|gb|AEG68080.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum Po82]
Length = 370
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 101/256 (39%), Gaps = 61/256 (23%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + + DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLKAFDH-----TKDQSYFLHRLNQAQLSRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTRVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPEGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KD+ N ++V + + H
Sbjct: 225 TIGQHIGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
HA L ++G PP + + L + + T+ DG +A +E + GQ
Sbjct: 285 HADDLSWVAGHPPAEGTHLAAKTRYRQVDAPCTVARATDGTLALA---FTEAQWAVTPGQ 341
Query: 188 FAAFYQGRRCLGSGVI 203
A Y G CLG G+I
Sbjct: 342 SAVLYDGDVCLGGGII 357
>gi|75055053|sp|Q5RB73.1|MTU1_PONAB RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
gi|55728489|emb|CAH90987.1| hypothetical protein [Pongo abelii]
Length = 422
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 109/278 (39%), Gaps = 82/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H KP S K Q
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQ 173
Query: 37 TYFLSHL-SQAQLRRLIF-------------------HLVLYPRLTI------------- 63
T+FLS + SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVFSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHF 233
Query: 64 ------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV 117
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV
Sbjct: 234 LLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFV 292
Query: 118 SRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCED 166
+ R L + ++ PP +K+ + H F + C LT+ +D
Sbjct: 293 APRTDHPALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLN--QD 350
Query: 167 GGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
G + VQ + LA GQFA FY+G CLGSG IL
Sbjct: 351 GTVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 385
>gi|116334036|ref|YP_795563.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus brevis ATCC 367]
gi|122269280|sp|Q03QJ0.1|MNMA_LACBA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116099383|gb|ABJ64532.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, PP-loop ATPase [Lactobacillus brevis
ATCC 367]
Length = 375
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 55/261 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DY+A+GHYA + A H + KDQTYFLS LS QL R++F +
Sbjct: 113 LDYALELGADYIATGHYAQLTRDEAGHAHLMRAVDQNKDQTYFLSQLSTEQLDRVMFPIG 172
Query: 56 -VLYPRLT-IPME------------GIILEAETG---DFLEK------------------ 80
++ P++ I E GI E G DFL+
Sbjct: 173 DLVKPQVREIAKEAGLATAEKKDSMGICFIGEKGHFKDFLKTYLPAKAGDMMTVDGEIKG 232
Query: 81 -HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ + LG+ +V+ KD++ NI++V + Y++ A
Sbjct: 233 HHAGLMYYTIGQRKGLGIGGDGIDNEPWFVIGKDLQKNILYVGKGYHNPHLYATHLSASD 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ ++ + ++ S H + +T+ H D G+ + V+ + + + GQ
Sbjct: 293 IHWVNTI--DRGSDFHCTAKFRYRQKDTGVTV-HLNDDGQQV-TVEFDDPARAITPGQAV 348
Query: 190 AFYQGRRCLGSGVILEAWDDQ 210
FY G CLGS +I A++ +
Sbjct: 349 VFYNGDECLGSAIIDAAYNQE 369
>gi|116629824|ref|YP_814996.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus gasseri ATCC
33323]
gi|116095406|gb|ABJ60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus gasseri ATCC 33323]
Length = 383
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 103/269 (38%), Gaps = 71/269 (26%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A GHYA +VH + K KDQTYFLS LSQ QL+++IF
Sbjct: 121 LDFAMDLDADYIAMGHYAATKVDENGIVHM---MRPKDGNKDQTYFLSQLSQDQLKKVIF 177
Query: 54 HL--VLYPRLT----------------------------------IPMEGIILEAETGDF 77
L + P++ +P + + G
Sbjct: 178 PLANLTKPQVREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLPAQSGKMVTPDGKV 237
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ +H G +YTIGQ LGL +VV KD++ N + V + Y S A
Sbjct: 238 VGEHAGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDA 297
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQ 181
+ +G P H + C+ + + D+ V V+ E +
Sbjct: 298 SGVSFFTGQPE------HDIDLKCTAKFRYRQ---PDVGVTMHYHAKDNTVHVEFDEPAR 348
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDDQ 210
+ GQ FY G CLG I A+ ++
Sbjct: 349 AVTPGQAIVFYNGEECLGGATIDRAYQNE 377
>gi|312110111|ref|YP_003988427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y4.1MC1]
gi|311215212|gb|ADP73816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y4.1MC1]
Length = 371
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 47/242 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA + + ++K V KDQTYFL+ L Q QL +++F L +
Sbjct: 119 SIGADYVATGHYARIEYRDGEYKLLRGVDQKKDQTYFLNQLGQEQLSKVMFPLGHLEKAQ 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + I++ G+ KH G +
Sbjct: 179 VRQIAKDAGLATATKKDSTGICFIGERDFKKFLSSYLPAQPGIMQTLDGEVKGKHDGVMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV K+++ NI++V++ + + A ++ +S P
Sbjct: 239 YTIGQRHGLGIGGNGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVNWVSDRKPP 298
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ +D D V E + + GQ FY G CLG G
Sbjct: 299 KSFRCTAKFRYRQPDIGVTVHVMDD---DKVEVVFDEPVRAVTPGQAVVFYNGEECLGGG 355
Query: 202 VI 203
I
Sbjct: 356 TI 357
>gi|449278852|gb|EMC86591.1| Mitochondrial tRNA-specific 2-thiouridylase 1, partial [Columba
livia]
Length = 389
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 108/278 (38%), Gaps = 82/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKPS---------------------VKDQ 36
A+ ++ D +A+GHYA + H +P KDQ
Sbjct: 87 AMDNLGADAIATGHYARTSLEDEEVFQQKHIKRPQRLFRNRFEVRNTVKLLQGADLFKDQ 146
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LR+ IF H VL +
Sbjct: 147 TFFLSQISQEALRKTIFPLGDLTKSFVKKIAAEHGLHHVLKKKEACMGVCFIGERNFENF 206
Query: 64 ------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV 117
P G + E + H+G++ YTIGQ L L + +VV+KD+ VFV
Sbjct: 207 LLEYLEPQPGNFVSIEDKKVMGTHQGWFLYTIGQRARLAGLKDAW-FVVDKDVSTGDVFV 265
Query: 118 SRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCED 166
+ R L + ++ PP +K+ + H F + C LT+ +D
Sbjct: 266 APTTDHPALYRDLLRTNRVHWIAEEPPAELVRDKMMECHLRFRHQMPLVPCVLTLN--QD 323
Query: 167 GGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
G + +V+ + + + GQFA FY+G CLGSG IL
Sbjct: 324 GSVWVTLVKPA---RAITPGQFAVFYKGDECLGSGKIL 358
>gi|336399603|ref|ZP_08580403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella multisaccharivorax DSM 17128]
gi|336069339|gb|EGN57973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella multisaccharivorax DSM 17128]
Length = 361
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 101/243 (41%), Gaps = 54/243 (22%)
Query: 9 FDYVASGHYANVV----HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
+D +A+GHYA H P VKDQT FL+ + Q QL++ +F
Sbjct: 123 YDLIATGHYAQTEWIDGHKWLTTSPDP-VKDQTDFLAQIYQWQLKKALFPIGHYVKNEVR 181
Query: 54 ------HLV--------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
HL+ R G ++E ET + +HRG WF+
Sbjct: 182 EIAEREHLINAKRKDSQGICFLGNINYDEYIRRYAGEKTGDVIELETSRKIGEHRGHWFH 241
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY--YSFDKKRHLFHAGSLKLLSGLP-- 143
TIGQ + LGL + +VV+KD E NI++VS Y + K L H L G+
Sbjct: 242 TIGQRKGLGLGGGPW-FVVKKDAEKNILYVSHGYDPQTAYKSDFLIHGFDF-LTEGVTSL 299
Query: 144 PEKISQLHSVFYNC-SLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR--RCLGS 200
PE ++ +C T+ C DG + E G+A GQF Y +C GS
Sbjct: 300 PECVTFKIRHTPDCHEATVADCGDGS---YTIHSKEQIHGVAPGQFCVIYDAEHHKCYGS 356
Query: 201 GVI 203
G I
Sbjct: 357 GEI 359
>gi|345323238|ref|XP_003430693.1| PREDICTED: LOW QUALITY PROTEIN: mitochondrial tRNA-specific
2-thiouridylase 1-like [Ornithorhynchus anatinus]
Length = 406
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 115/290 (39%), Gaps = 97/290 (33%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKPS---------------------VKDQ 36
A+ S+ D +A+GHYA + ++ +P VKDQ
Sbjct: 98 AMDSLGADAIATGHYARTSQEDEEVFQQKYQKRPEGLFRDRFEVRNAVRLLQGADRVKDQ 157
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVL---------YPRLTI----- 63
T+FLS +SQ LRR IF H VL +PR+
Sbjct: 158 TFFLSQVSQDALRRTIFPLGSLTKTFVKKLAAENGLHHVLQKKEVCQPRFPRVLTGTCGG 217
Query: 64 ----------------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVE 107
P G + E G L H+G++ +T+GQ ++G L + +VVE
Sbjct: 218 FIGKRNFESFILEYLQPRPGKFISIEDGSVLGTHKGWFLFTLGQRAKIGGLKDPW-FVVE 276
Query: 108 KD-IENNIVFVSRNYYSFDKKRHLFHAGSLKL--LSGLPPEKISQLHSVFYNCSLTIEHC 164
KD + +I VS + + + R AG ++ L+ PP + + C+ I H
Sbjct: 277 KDALTGDIFVVSTDPPAPVRTR----AGPTRVHXLAEEPPAPL--VRDKMMECNFRIRH- 329
Query: 165 EDGGEDIAVVQLSEDD----------QGLAAGQFAAFYQGRRCLGSGVIL 204
V+ L++D +GL GQFA FY+G CLGSG I+
Sbjct: 330 -QMALAPCVLTLNQDGTVWVTSVKPVRGLTPGQFAVFYKGDECLGSGKIV 378
>gi|402815545|ref|ZP_10865137.1| tRNA-specific 2-thiouridylase MnmA [Paenibacillus alvei DSM 29]
gi|402506585|gb|EJW17108.1| tRNA-specific 2-thiouridylase MnmA [Paenibacillus alvei DSM 29]
Length = 368
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 101/245 (41%), Gaps = 58/245 (23%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V+H H + S KDQTYFL+ L+Q QL + +F + P+ +
Sbjct: 123 DYLATGHYARVLHEDGKHTLLRGVDSNKDQTYFLNALNQEQLAKAMFPIGHLPKPEVRRI 182
Query: 64 ---------------------------------PME-GIILEAETGDFLEKHRGFWFYTI 89
P + G +++ T + +H G +YT+
Sbjct: 183 AEEAGLATAKKKDSTGVCFIGERNFKQFLSQYLPAQPGQMIDIRTHEVKGRHDGLMYYTL 242
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK-----LLSG 141
GQ Q LG+ +V EKD+ NN+++V + D L+ G + +
Sbjct: 243 GQRQGLGIGGSGSGEPWFVAEKDLTNNVLYVVQG----DDHPSLYSTGLVASQVNWIAGD 298
Query: 142 LPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
+P E I Y + +T++ DG V + + + GQ FY G CL
Sbjct: 299 MPNEPIRCTAKFRYRQPDQGVTLQKNADG---TVEVTFDINQRAVTPGQAVVFYDGDTCL 355
Query: 199 GSGVI 203
G G I
Sbjct: 356 GGGTI 360
>gi|227889771|ref|ZP_04007576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus johnsonii ATCC 33200]
gi|227849635|gb|EEJ59721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus johnsonii ATCC 33200]
Length = 383
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 103/269 (38%), Gaps = 71/269 (26%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A GHYA VVH + K KDQTYFL+ LSQ QL+++IF
Sbjct: 121 LDFAMDLDADYIAMGHYAATRVDDNGVVHM---MRPKDGNKDQTYFLNQLSQDQLKKVIF 177
Query: 54 HL--VLYPRLT----------------------------------IPMEGIILEAETGDF 77
L + P++ +P + + G
Sbjct: 178 PLANLTKPQVREIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLPAQSGKMVTPDGKV 237
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ +H G +YTIGQ LGL +VV KD++ N + V + Y S A
Sbjct: 238 VGEHAGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDA 297
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQ 181
+ +G P H V C+ + + D+ V V+ E +
Sbjct: 298 SGVSFFTGQPD------HDVDLKCTAKFRYRQ---PDVGVTMHYRAKDNTVHVEFDEPAR 348
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDDQ 210
+ GQ FY G CLG I A+ ++
Sbjct: 349 AVTPGQAIVFYNGEECLGGATIDRAYQNE 377
>gi|17547442|ref|NP_520844.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia solanacearum GMI1000]
gi|24638316|sp|Q8XVV4.1|MNMA_RALSO RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|17429745|emb|CAD16430.1| probable trna
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Ralstonia solanacearum GMI1000]
Length = 370
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 96/248 (38%), Gaps = 45/248 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D ++ D +A+GHYA V + K KDQ+YFL L+QAQL R +F L
Sbjct: 110 LDHAMALGADTIATGHYARVREAGGRFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGE 169
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
P+ + P + + G + +H
Sbjct: 170 MPKTRVREIAAEIGLPNARKKDSTGICFIGERPFRDFLNRYLPTKPGPIRTPDGKTIGQH 229
Query: 82 RGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G FYT+GQ + +G+ YV KD+ N ++V++ + H HA L
Sbjct: 230 IGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTVHADDL 289
Query: 137 KLLSGLPPEKISQLHS-VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
++G PP + +QL + Y + D + + + GQ A Y G
Sbjct: 290 SWVAGHPPAEGTQLAAKTRYRQADAPCAVTRATGDALTLTFQQAQWAVTPGQSAVLYDGD 349
Query: 196 RCLGSGVI 203
CLG G+I
Sbjct: 350 ICLGGGII 357
>gi|282851667|ref|ZP_06261032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus gasseri 224-1]
gi|311110534|ref|ZP_07711931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus gasseri MV-22]
gi|205822450|sp|Q042R4.2|MNMA_LACGA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|282557635|gb|EFB63232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus gasseri 224-1]
gi|311065688|gb|EFQ46028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus gasseri MV-22]
Length = 375
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 103/269 (38%), Gaps = 71/269 (26%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A GHYA +VH + K KDQTYFLS LSQ QL+++IF
Sbjct: 113 LDFAMDLDADYIAMGHYAATKVDENGIVHM---MRPKDGNKDQTYFLSQLSQDQLKKVIF 169
Query: 54 HL--VLYPRLT----------------------------------IPMEGIILEAETGDF 77
L + P++ +P + + G
Sbjct: 170 PLANLTKPQVREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLPAQSGKMVTPDGKV 229
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+ +H G +YTIGQ LGL +VV KD++ N + V + Y S A
Sbjct: 230 VGEHAGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDA 289
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV------------VQLSEDDQ 181
+ +G P H + C+ + + D+ V V+ E +
Sbjct: 290 SGVSFFTGQPE------HDIDLKCTAKFRYRQ---PDVGVTMHYHAKDNTVHVEFDEPAR 340
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDDQ 210
+ GQ FY G CLG I A+ ++
Sbjct: 341 AVTPGQAIVFYNGEECLGGATIDRAYQNE 369
>gi|336234536|ref|YP_004587152.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoglucosidasius
C56-YS93]
gi|423719148|ref|ZP_17693330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus thermoglucosidans TNO-09.020]
gi|335361391|gb|AEH47071.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoglucosidasius
C56-YS93]
gi|383368051|gb|EID45326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus thermoglucosidans TNO-09.020]
Length = 371
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 47/242 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA + + ++K V KDQTYFL+ L Q QL +++F L +
Sbjct: 119 SIGADYVATGHYARIEYRDGEYKLLRGVDQKKDQTYFLNQLGQEQLSKVMFPLGHLEKAQ 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + I++ G+ KH G +
Sbjct: 179 VRQIAKDAGLATATKKDSTGICFIGERDFKKFLSSYLPAQPGIMQTLDGEVKGKHDGVMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV K+++ NI++V++ + + A ++ +S P
Sbjct: 239 YTIGQRHGLGIGGNGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVNWVSDRKPP 298
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ +D D V E + + GQ FY G CLG G
Sbjct: 299 KSFRCTAKFRYRQPDIGVTVHVMDD---DKVEVIFDEPVRAVTPGQAVVFYNGEECLGGG 355
Query: 202 VI 203
I
Sbjct: 356 TI 357
>gi|116872941|ref|YP_849722.1| tRNA-specific 2-thiouridylase MnmA [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|123461086|sp|A0AIW1.1|MNMA_LISW6 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116741819|emb|CAK20943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria welshimeri serovar 6b str. SLCC5334]
Length = 371
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 47/249 (18%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKIGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHESLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ DG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTFECTAKFRYRQTDTKVTVHLRSDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAWDDQ 210
I W ++
Sbjct: 356 TIDTVWKNE 364
>gi|310643522|ref|YP_003948280.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus polymyxa SC2]
gi|309248472|gb|ADO58039.1| tRNA-specific 2-thiouridylase mnmA [Paenibacillus polymyxa SC2]
gi|392304277|emb|CCI70640.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus polymyxa M1]
Length = 373
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 100/248 (40%), Gaps = 62/248 (25%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA VV + S KDQTYFL+ LSQAQL R +F + P+ +
Sbjct: 123 DYVATGHYARVVEEDGRFTLLRGVDSNKDQTYFLNALSQAQLSRTMFPIGHLPKPEVRRI 182
Query: 64 ---------------------------------PMEG-IILEAETGDFLEKHRGFWFYTI 89
P +G +++ TG+ +H G +YT+
Sbjct: 183 AEAAGLYTAKKKDSTGVCFIGERNFKEFLSGYLPAKGGDMVDIATGEVKGRHDGLMYYTL 242
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK 146
GQ Q LG+ +V +KD+E NI++V + + H ++ SL E
Sbjct: 243 GQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQG-----DRHHSLYSTSLIATDVNWIEG 297
Query: 147 ISQLHSVFYNCS-----------LTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
S + C+ +T++ DG V + + GQ FY G
Sbjct: 298 ADARPSGEFRCTAKFRYRQPDQQVTLQWLPDG---TVHVVFDIHQKAITPGQAVVFYDGE 354
Query: 196 RCLGSGVI 203
RCLG G I
Sbjct: 355 RCLGGGTI 362
>gi|317128230|ref|YP_004094512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cellulosilyticus DSM 2522]
gi|315473178|gb|ADU29781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cellulosilyticus DSM 2522]
Length = 367
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 65/257 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL-- 55
+D S+ DYVA+GHYA V HS + + KDQTYFL+ LS+ QL+ ++F +
Sbjct: 115 LDHAMSLGADYVATGHYARVRHSDNGVELLRGIDENKDQTYFLNALSEDQLKHVLFPIGE 174
Query: 56 VLYPRLT----------------------------------IPMEGIILEAETGDFLEKH 81
+ PR+ +P + ++ G+ H
Sbjct: 175 IEKPRVREIAKEAHLATATKKDSTGICFIGERNFKEFLSQYLPAQRGEMQTLDGEVKGYH 234
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YT+GQ Q LG+ +V++KD++ NI+ V + Y H +L S
Sbjct: 235 DGLMYYTLGQRQGLGIGGAGEPWFVIDKDLDKNILLVGQGY----------HHPAL-YSS 283
Query: 141 GLPPEKISQLHSVF------YNCSLTIEHCE-DGGEDIAV-------VQLSEDDQGLAAG 186
GL E ++ ++ ++C+ + + D G +++ V E ++ + G
Sbjct: 284 GLIAEDVNWINQHLIKGKKEFHCTAKFRYRQKDQGVTVSIMNDGQVKVIFDEQERAITPG 343
Query: 187 QFAAFYQGRRCLGSGVI 203
Q FY G CLG GVI
Sbjct: 344 QSVVFYDGEVCLGGGVI 360
>gi|291414311|ref|XP_002723404.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate
methyltransferase-like [Oryctolagus cuniculus]
Length = 490
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 109/277 (39%), Gaps = 81/277 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + + +P S KDQ
Sbjct: 187 AVDNLGADAVATGHYARTSLEDEEVFQQKYIKRPEGLFRNRFEVRNPVKLLQAADSFKDQ 246
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 247 TFFLSQVSQPALRRTIFPLGGLTKPFVKKIAAENRLHHVLQKKESMGICFVGKRNFEHFI 306
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++ L + +VV+KD VFV+
Sbjct: 307 LQYLQPRPGKFISIEDNQVLGTHKGWFLYTLGQRAKISGLREPW-FVVDKDGAKGDVFVA 365
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 366 PRTDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 423
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+ V+ + L GQFA FY+G CLGSG IL
Sbjct: 424 TVWVTAVKAV---RALTPGQFAVFYKGDECLGSGKIL 457
>gi|406906892|gb|EKD47902.1| tRNA-specific 2-thiouridylase MnmA [uncultured bacterium]
Length = 349
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 111/255 (43%), Gaps = 62/255 (24%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
M + M D++A+GHYA + +H+ AD K KDQ+YFL L+QAQL+ ++
Sbjct: 101 MTKVRGMGADFLATGHYARIKKNKNIYELHAGADPK-----KDQSYFLYRLTQAQLKHVM 155
Query: 53 FHL-------------------------------------VLYPRLTIPM----EGIILE 71
F L + + +P EG+I++
Sbjct: 156 FPLGDTTKEKTKAFGKEYGLRSAIERDESQGICFIPDKFYTDFLKNHLPKSCFEEGLIID 215
Query: 72 AETGDFLEKHRGFWFYTIGQHQEL--GLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRH 129
+ G +HRG +YT GQ + L G L Y YV++ D +NN +FV + Y + K+
Sbjct: 216 MD-GTKRGRHRGLPYYTCGQRKGLFIGGLKEPY-YVIKTDYKNNTLFVGGDKYLWHKE-- 271
Query: 130 LFHAGSLKLLSGLPPEKISQLHS-VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
+A L +SG P K ++ + +L E ++ A V ++ + GQ
Sbjct: 272 -IYAKELSFISGKTPSKTFTANARTRHLGTLEKAKVEILNKNTAKVVFAKPVRAFTEGQS 330
Query: 189 AAFYQGRRCLGSGVI 203
FY+G + +G G +
Sbjct: 331 IVFYKGSKVIGGGTM 345
>gi|325919552|ref|ZP_08181566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas gardneri ATCC 19865]
gi|325549961|gb|EGD20801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas gardneri ATCC 19865]
Length = 378
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V HS + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAAQALGAERIATGHYARVAHSGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 169 LEKSTLRRIAQDANLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + H +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSHWLQSEQP 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + T+E +DG V+ + + GQ Y
Sbjct: 289 HWVTGAPPARSFSCTAQTRYRQPDEPCTVEVRDDGS---VQVRFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G CLG VI
Sbjct: 346 DGEECLGGAVI 356
>gi|262039106|ref|ZP_06012439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Leptotrichia goodfellowii F0264]
gi|261746895|gb|EEY34401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Leptotrichia goodfellowii F0264]
Length = 365
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 104/255 (40%), Gaps = 56/255 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
+D + D+VA+GHYA ++H D K K + KDQTYFL L+Q QL +++F
Sbjct: 110 LDYAMKIGADHVATGHYARIIHEEKDGKIKSVMLRGIDDNKDQTYFLCQLNQKQLEKVLF 169
Query: 54 HLVLYPRLTI---------------PMEGII--------------LEAETGDFLE----- 79
+ Y + I GI L A+TG+ ++
Sbjct: 170 PIGEYTKPQIREIAEKYNLKTAKKKDSTGICFIGERDFNEFLSKYLPAKTGNIVDTKGNT 229
Query: 80 --KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFH 132
KH G +YTIGQ + +G+ +VV+K+++ N + V++ S + L
Sbjct: 230 LGKHNGLMYYTIGQRKGIGIGNTKEGTGEPWFVVDKNLDTNELIVTQGDNSVLYSKGLI- 288
Query: 133 AGSLKLLSG----LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
A ++ P E + + I D +I E + + GQ
Sbjct: 289 ATDFNFINKDELQFPLECTVKFRYRQKDAGAVINKLNDNEYEII---FDEPQKAITLGQI 345
Query: 189 AAFYQGRRCLGSGVI 203
A Y+G CLG GVI
Sbjct: 346 AVVYKGEECLGGGVI 360
>gi|194337468|ref|YP_002019262.1| tRNA-specific 2-thiouridylase MnmA [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309945|gb|ACF44645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pelodictyon phaeoclathratiforme BU-1]
Length = 361
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 97/248 (39%), Gaps = 48/248 (19%)
Query: 7 MEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL-------- 55
++ D+VA+GH+A S + K KDQ+YFL LSQ L R +F L
Sbjct: 114 LDADFVATGHFAATSFSEGRYRLYKGADPEKDQSYFLWMLSQGDLARTLFPLGELTKPEV 173
Query: 56 ----------------------------VLYPRLTIP------MEGIILEAETGDFLEKH 81
Y IP +G I++ E+G + KH
Sbjct: 174 RALARSFGVRAAEKRESQEICFVPQDDYCGYLASAIPGLAERVADGDIVD-ESGRVIGKH 232
Query: 82 RGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
RG+ FYTIGQ + LG+ YV D E N + V + S + L +G +
Sbjct: 233 RGYPFYTIGQRRGLGVSAKEPLYVTALDTEQNRIEVGKK--SSLECSSLVASGINLIGME 290
Query: 142 LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
P I + Y T E GE+ A V S +A GQ A FY+ R LG G
Sbjct: 291 RPNIPIEAYGKIRYRDRETPCTLEPFGENSATVSFSTPKSAVAKGQAAVFYRDREVLGGG 350
Query: 202 VILEAWDD 209
I + +
Sbjct: 351 FITQVMQE 358
>gi|347548895|ref|YP_004855223.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria ivanovii subsp. ivanovii PAM 55]
gi|346981966|emb|CBW85951.1| Putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria ivanovii subsp. ivanovii PAM 55]
Length = 371
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ D+VA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADFVATGHYAQVKQVGDEIELLRGVDNNKDQTYFLNQLSQEQLQKVMFPLGGMEKSE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + ++ G+ L KH G +
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGKMQTLNGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD+ NI+FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLTENILFVEQGFHHDTLYSDSLIATDISFTTNAAKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ H D + A V +E + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTV-HLRD--DHTAEVVFAEPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|406026584|ref|YP_006725416.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus buchneri CD034]
gi|405125073|gb|AFR99833.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Lactobacillus buchneri CD034]
Length = 374
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 106/255 (41%), Gaps = 50/255 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D + DY+A+GHYA + + H + KDQTYFLS LS QL R++F
Sbjct: 113 LDYALELGADYIATGHYAQLTRDADGHNHLLRASDGNKDQTYFLSQLSADQLDRVMFPIG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD--------------FLE-------------------K 80
+LV I E + A+ D FL +
Sbjct: 173 NLVKPDVRKIAREAGLATADKKDSVGICFIGEKNFKNFLGHYLPATPGKMMTVDGKVKGQ 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ + +VV KD++ NI++V + Y++ A +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKQNILYVGKGYHNPLLYADYLEASDI 292
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ L K + F + +T+ H D G+ + V + + GQ FY
Sbjct: 293 HWVNNLDRGKDFHCTAKFRYRQKDTGVTV-HISDDGQSVRV-DFDAPVRAITPGQAVVFY 350
Query: 193 QGRRCLGSGVILEAW 207
G CLGS +I A+
Sbjct: 351 DGDECLGSAIIDAAY 365
>gi|331701087|ref|YP_004398046.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL
B-30929]
gi|329128430|gb|AEB72983.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL
B-30929]
Length = 374
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 50/255 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D + DY+A+GHYA + + H + KDQTYFLS LS QL R++F
Sbjct: 113 LDYALELGADYIATGHYAQLTRDADGHNHLLRASDGNKDQTYFLSQLSADQLDRVMFPIG 172
Query: 54 HLVLYPRLTIPMEGIILEAET---------------------------------GDFLEK 80
+LV I E + A+ G+ +
Sbjct: 173 NLVKPDVRKIAREAGLATADKKDSVGICFIGEKNFKNFLGHYLPATPGKMMTVDGEVKGQ 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ + +VV KD++ NI++V + Y++ A +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKQNILYVGKGYHNPLLYADYLEASDI 292
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ L K + F + +T+ H D G+ + V + + GQ FY
Sbjct: 293 HWVNNLDRGKDFHCTAKFRYRQKDTGVTV-HISDDGQSVRV-DFDAPVRAITPGQAVVFY 350
Query: 193 QGRRCLGSGVILEAW 207
G CLGS +I A+
Sbjct: 351 DGDECLGSAIIDAAY 365
>gi|350546603|ref|ZP_08915981.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Mycoplasma iowae 695]
gi|349503841|gb|EGZ31406.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Mycoplasma iowae 695]
Length = 368
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 63/257 (24%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHK------DKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
A+ + DY+A+GHYA + S+ K DK KDQTYFL+ LSQAQ+ +IF L
Sbjct: 120 ALKTFNADYIATGHYAKIKKDSSGTKYLCESFDKN--KDQTYFLNQLSQAQIANVIFPLA 177
Query: 57 LYPRLTI-------------------------------------PMEGIILEAETGDFLE 79
+ + EG I++ T + +
Sbjct: 178 NLSKECVREIAKKYDLINWDKKDSTGICFIGERDIKKFLANYIDEKEGDIIDITTNEKIG 237
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSR--NYYSFDKKRHLFHAGSL 136
H+G YTIGQ + + L R +V +KD+E NI++V+ N S+ +
Sbjct: 238 THKGVHLYTIGQRKGMNLSGNKKRQFVCKKDVEKNIIYVTDKLNDSSYLMSNYC-ELTDF 296
Query: 137 KLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
+S +P Q+ F NC I D + + + GQ+A
Sbjct: 297 NWISKIPYS--DQVEVRFRHTQAKQNCRFKIFG------DKVYLFYENKSESVTVGQYAV 348
Query: 191 FYQGRRCLGSGVILEAW 207
Y+ CLG G I + W
Sbjct: 349 IYKNGICLGGGTISQTW 365
>gi|403237609|ref|ZP_10916195.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. 10403023]
Length = 370
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 47/238 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DY+A+GHYA V + ++K V KDQTYFL+ L+Q QL +++F + + P++
Sbjct: 122 DYLATGHYAQVENRDGEYKMLRGVDENKDQTYFLNQLTQDQLSKVMFPIGNIEKPKVREL 181
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + + +G+ KH G +YTIG
Sbjct: 182 AKNANLATATKKDSTGICFIGERNFKEFLGNYLPAQPGEMMTLSGEVKGKHDGLMYYTIG 241
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + + KD+E NI++V + +++ A ++ +S PEK +
Sbjct: 242 QRHGLGIGGSGEPWFAIGKDLEKNILYVDQGFHNEYLYSDSILATNVSWVSDNRPEKDVK 301
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ F + ++T++ + E+ V E + + GQ FY G CLG I
Sbjct: 302 CTAKFRYRQQDNAVTVQKVD---ENTVKVIFDEPIRAVTPGQAVVFYNGDECLGGATI 356
>gi|239827834|ref|YP_002950458.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70]
gi|239808127|gb|ACS25192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. WCH70]
Length = 371
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 103/246 (41%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + ++K V KDQTYFL+ L Q+ L +++F + +
Sbjct: 119 SIGADYVATGHYARVEYRDGEYKMLRGVDQNKDQTYFLNQLGQSVLSKVMFPIGHLEKAQ 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + I++ G+ KH G +
Sbjct: 179 VRQIAKDAGLVTATKKDSTGICFIGERDFKEFLSNYLPAKPGIMQTLDGEVKGKHDGVMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV K+++ NI++V++ + + A ++ +S P
Sbjct: 239 YTIGQRHGLGIGGSGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVNWVSDRKPT 298
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
Q + F + +T+ +D D V E + + GQ FY G CLG G
Sbjct: 299 NSFQCTAKFRYRQPDTGVTVHIIDD---DKVEVVFDEPVRAVTPGQAVVFYNGEECLGGG 355
Query: 202 VILEAW 207
I E +
Sbjct: 356 TIDEVF 361
>gi|433444170|ref|ZP_20409180.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anoxybacillus flavithermus TNO-09.006]
gi|432001818|gb|ELK22687.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anoxybacillus flavithermus TNO-09.006]
Length = 371
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 47/238 (19%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V + ++ + + KDQTYFL+ L QAQL +++F + + +
Sbjct: 123 DYLATGHYARVAYRDGEYQLLRGLDANKDQTYFLNQLGQAQLSKVLFPIGELQKSKVREI 182
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + ++ G+ H G +YTIG
Sbjct: 183 AKEAGLATAGKKDSTGICFIGERNFKQFLSNYLPAQPGEMQTLDGEVKGTHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ +VV K++++NI++V++ + + A ++ +SG P +
Sbjct: 243 QRHGLGIGGSGEPWFVVGKNLKDNILYVAQGFDNELLYSDAIIATNVNWVSGRKPSEPMS 302
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ F + +T+E + E A V + + + GQ FY G +CLG G I
Sbjct: 303 CTAKFRYRQPDVPVTVEMID---ETTARVSFEQRVRAVTPGQAVVFYNGEQCLGGGTI 357
>gi|366053388|ref|ZP_09451110.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus suebicus KCTC
3549]
Length = 377
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 59/254 (23%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
DY+A+GHYA++ + KDQTYFLS L QL R++F
Sbjct: 122 DYIATGHYADLQRDKDGQMHLMRATDQNKDQTYFLSQLDHEQLDRVMFPLAGLTKPEVRQ 181
Query: 54 -------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
H + +P + + GD + +H G +YT
Sbjct: 182 IAKDAGLATADKKDSVGICFIGEKGHFRDFLSTYLPAKPGKMMTLDGDVMGEHTGLMYYT 241
Query: 89 IGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
IGQ + LG+ +V+ KD E N+++V + Y++ HL+ A L
Sbjct: 242 IGQRKGLGIGGNGTSNDPWFVIGKDQEKNVLYVGQGYHN----EHLY-ATHLNASDIHWV 296
Query: 145 EKISQLHSVFYNCSLTIEHCE---------DGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ IS + ++C+ + + D G V + + + GQ FY G
Sbjct: 297 DDISAKYGDSFHCTAKFRYRQKDVGVTVNLDNGGQTVTVSFDDPARAITPGQAVVFYDGD 356
Query: 196 RCLGSGVILEAWDD 209
CLGS +I +A+++
Sbjct: 357 ECLGSAIIDQAYNE 370
>gi|343491679|ref|ZP_08730060.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma columbinum SF7]
gi|343128478|gb|EGV00278.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma columbinum SF7]
Length = 371
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 100/241 (41%), Gaps = 44/241 (18%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
A + + D++A GHYANV+ ++ K KDQTYFL+ L+ QL+++I L Y +
Sbjct: 122 AFNVLNADFIAMGHYANVIDGKL-YRAKDKDKDQTYFLAQLTHEQLKKVIMPLAKYEKSQ 180
Query: 63 I-------------------------------------PMEGIILEAETGDFLEKHRGFW 85
I EG TG + KH G +
Sbjct: 181 IREIAHELNLATASKKDSTGICFIGERNFTKFLQNYIPAQEGDTFSILTGKKVGKHEGCF 240
Query: 86 FYTIGQHQELGLLYIVY-RYVVEKDIENNIVFVS-RNYYSFDKKRHLFHAGSLKLLSGLP 143
+YT+GQ + L L + YV +D++ NI++V+ + SF L + +
Sbjct: 241 YYTLGQRKGLNLGGMSEPHYVCGRDVQKNILYVAPASDMSFLTSDSLLASNLNLNNTDYD 300
Query: 144 PEKIS-QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
P ++ + + + +E E+ + V E Q + GQ Y G +CLG G+
Sbjct: 301 PNNLTAKFRYRQQDIKVKVELLEN---NFIRVNYPETAQAVTPGQQVVLYDGDKCLGGGI 357
Query: 203 I 203
I
Sbjct: 358 I 358
>gi|422409742|ref|ZP_16486703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL F2-208]
gi|313608681|gb|EFR84517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria monocytogenes FSL F2-208]
Length = 371
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 98/246 (39%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLNGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYRY-VVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ + V KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWXXVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G C G G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICFGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|239813406|ref|YP_002942316.1| tRNA-specific 2-thiouridylase MnmA [Variovorax paradoxus S110]
gi|239799983|gb|ACS17050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Variovorax paradoxus S110]
Length = 369
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 101/260 (38%), Gaps = 56/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-- 53
+D + + +A+GHYA V ++ H K KDQ+YFL L+QAQL + +F
Sbjct: 110 LDHAMRLGAEKIATGHYARVRLNETTGRHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPV 169
Query: 54 ---HLVLYPRLT-------------------------------IPMEGIILEAETGDFLE 79
H R+ I E ++ + G L
Sbjct: 170 GELHKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISKEPGPIKDDRGRKLG 229
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR------------YVVEKDIENNIVFVSRNYYSFDKK 127
+H+G FYT+GQ Q LG+ + + +V KD+E N ++V + +
Sbjct: 230 EHQGLSFYTLGQRQGLGIGGVKEKGAQRGSGDHSPWFVARKDVEKNTLWVVQGHDHPWLL 289
Query: 128 RHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV---VQLSEDDQGLA 184
AG +SG P Y + E+GG D A ++ E +
Sbjct: 290 SSALAAGDASWVSGEAPAPGRYGSKARYRQADAACELEEGGGDPAASFSLRFGEPQWAVT 349
Query: 185 AGQFAAFYQGRRCLGSGVIL 204
GQ A Y G RCLG GVI+
Sbjct: 350 PGQSAVLYDGERCLGGGVIV 369
>gi|195952741|ref|YP_002121031.1| tRNA-specific 2-thiouridylase MnmA [Hydrogenobaculum sp. Y04AAS1]
gi|226704772|sp|B4U7E2.1|MNMA_HYDS0 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|195932353|gb|ACG57053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Hydrogenobaculum sp. Y04AAS1]
Length = 342
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
+ + D++A+GHY V+ K + KDQ+YF++ + + L L+F +
Sbjct: 115 TADIDFLATGHY--VIKEEGKIK-RAKEKDQSYFMALVPKQSLDYLMFPVGYMTKQEIRD 171
Query: 57 LYPRLTIPM----------------------------EGIILEAETGDFLEKHRGFWFYT 88
+ ++ +P+ +G I+ T L KH+G YT
Sbjct: 172 IAKKINLPVANKIESQDVCFLKGMDLEDYLSQFIDMTQGDIVHIATQKTLGKHKGIHRYT 231
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP-EKI 147
IGQ LG+ Y YVVEKDIE NI++V Y L A +LK + L EK
Sbjct: 232 IGQRHGLGVSYHKPLYVVEKDIEKNILYVGEKEYL------LKDAITLKDYNKLEDFEKD 285
Query: 148 SQLHSVFYNCS-LTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ + YN + I+H E+ +++ ++ L E +A GQ A Y G LG G+I
Sbjct: 286 NMYIQIRYNSKPIPIKHIEENKDNV-IIFLKEPATQVAKGQVGAIYFGDILLGGGII 341
>gi|114332296|ref|YP_748518.1| tRNA-specific 2-thiouridylase MnmA [Nitrosomonas eutropha C91]
gi|122313046|sp|Q0ADM9.1|MNMA_NITEC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|114309310|gb|ABI60553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosomonas eutropha C91]
Length = 361
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 61/259 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV- 56
+D ++ D++A+GHYA V + K + KDQ+YFL L+Q QL R IF +
Sbjct: 110 LDHALALGADWIATGHYAQVHEINGQFQLLKGEDGNKDQSYFLYRLNQQQLSRTIFPIGH 169
Query: 57 LYPRLT-----------------------------------IPMEGIILEAETGDFLEKH 81
LY R +P++ + G + +H
Sbjct: 170 LYKREVRKIAHKHGLPNSTKKDSTGICFIGERPFREFLNRYLPVDPGEIHTLDGQIVGEH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
+G +YTIGQ Q LG+ I +V KD++ N+++V + + R A L
Sbjct: 230 QGLMYYTIGQRQGLGIGGIREGSEQPWFVSGKDMQTNVLYVVQGHDHPALLRSSLTAADL 289
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD---------QGLAAGQ 187
+SG PP + S +++ T C A+++L D G+ GQ
Sbjct: 290 SWISGAPPHQ-SWVYAAKIRYRQTDAPC-------AIIRLEHDSCQIGFAAPQWGVTPGQ 341
Query: 188 FAAFYQGRRCLGSGVILEA 206
Y+ + CLG G+I ++
Sbjct: 342 SVVIYESKVCLGGGIITDS 360
>gi|289434792|ref|YP_003464664.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419114|ref|ZP_16496069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri FSL N1-067]
gi|289171036|emb|CBH27578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313633159|gb|EFS00043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri FSL N1-067]
Length = 371
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 101/246 (41%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ D+VA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADFVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQEQLQKVMFPLGGMEKKE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + ++ G+ L KH G +
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGKMQTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +V KD++ NI+FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ H D ++ A V +E + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTV-HLRD--DNTAEVVFAEPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|348618717|ref|ZP_08885231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Glomeribacter gigasporarum BEG34]
gi|347816001|emb|CCD30038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Glomeribacter gigasporarum BEG34]
Length = 355
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 96/244 (39%), Gaps = 58/244 (23%)
Query: 12 VASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL---------VL 57
+A+GHYA + H A + S KDQ+YFL L+QAQL R+ F L +
Sbjct: 117 IATGHYARI-HRPAQGGIELRRACDSTKDQSYFLHRLNQAQLARVCFPLGAMQKAQVRAI 175
Query: 58 YPRLTIP------MEGI--ILEAETGDFLEK-------------------HRGFWFYTIG 90
R+ +P GI I E DFL + H G FYT+G
Sbjct: 176 AARIGLPNAAKKDSTGICFIGERPFRDFLSRYLPRAPGPIKTPDGQTVGEHIGMAFYTLG 235
Query: 91 QHQELGLLYI-----VYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP- 144
Q + +GL I YV KD N ++V + + R + + +SG PP
Sbjct: 236 QRKGIGLGGIRNGNGAPWYVARKDSAQNTLYVVQGHTHPWLNRDSIDLENARWISGAPPP 295
Query: 145 -----EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
++ C+L H E+ + + GQ+A Y G RC+G
Sbjct: 296 DGFRCSAKTRYRQTDAPCTLIRTH-----ENRFTLHFDQPQWAATPGQYAVLYHGERCIG 350
Query: 200 SGVI 203
GVI
Sbjct: 351 GGVI 354
>gi|56963351|ref|YP_175082.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Bacillus clausii KSM-K16]
gi|81366419|sp|Q5WHN4.1|MNMA_BACSK RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|56909594|dbj|BAD64121.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Bacillus clausii KSM-K16]
Length = 364
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 47/242 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA + ++ K + KDQTYFL+ LSQ QL +++F L +
Sbjct: 118 SLGADYVATGHYAQLQELDGEYRLIKGADANKDQTYFLNALSQKQLSKVMFPLGHLQKAE 177
Query: 63 I---------------PMEGIIL-------------------EAETGDFLEK--HRGFWF 86
+ GI ET D ++K H G +
Sbjct: 178 VRKIAAEAELATATKKDSTGICFIGERDFKEFLQTFLPAQPGRMETMDGIDKGQHDGLMY 237
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YT+GQ Q LG+ +V++KD+E N++ V + Y+ A + ++
Sbjct: 238 YTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGYHHPGLYSDGLWATDMNWIAKEERT 297
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ F + +T+ EDG A +Q + + + GQ Y+G RC+G G
Sbjct: 298 SPFTCKAKFRYRQEDQGVTVFPKEDG---RAFIQFDQPQRAITPGQAVVLYEGDRCIGGG 354
Query: 202 VI 203
VI
Sbjct: 355 VI 356
>gi|427392348|ref|ZP_18886353.1| tRNA-specific 2-thiouridylase mnmA [Alloiococcus otitis ATCC 51267]
gi|425731309|gb|EKU94127.1| tRNA-specific 2-thiouridylase mnmA [Alloiococcus otitis ATCC 51267]
Length = 375
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 59/260 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D + DYVA+GHYA ++ + K KDQTYFL+ LSQ QL +++F L
Sbjct: 113 LDYALDLGADYVATGHYARLLRDADGTAHLLKGLDGNKDQTYFLNQLSQDQLSKVLFPLG 172
Query: 57 LYPRLTI------------------------------------PMEGIILEAETGDFLEK 80
+ + P + +E G+ + +
Sbjct: 173 DMDKKEVRAIAERAGLATAKKKDSTGICFIGERNFKDFLMDYLPAQPGNMETLDGEVVNQ 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLF---- 131
H G +YTIGQ + LG+ V +V+ KD++ N++ V + Y HL+
Sbjct: 233 HDGLMYYTIGQRKGLGIGGGVNHQNEPWFVIGKDLDRNVLLVGQGY----DHDHLYASHL 288
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A P++ + + F T+ + + ++ A V + + + GQ
Sbjct: 289 EASDFSFTQEAKPQETFRCQAKFRYRTKEVPATVHY--NAQDNTARVDFDQTARAVTPGQ 346
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I +A+
Sbjct: 347 AIVFYDGDECLGGGTIDQAY 366
>gi|294666592|ref|ZP_06731831.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
[Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292603612|gb|EFF47024.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
[Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 378
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 102/255 (40%), Gaps = 59/255 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 169 LEKSTLRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ NN+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQT 288
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTI------EHCEDGGEDIAVVQL--SEDDQGLAAGQF 188
++G PP + ++C+ EHC +D VQ+ + + GQ
Sbjct: 289 HWVTGAPPARR-------FSCTAQTRYRQPDEHCTVDVQDDGSVQVRFERPQRAVTPGQS 341
Query: 189 AAFYQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 342 LVLYDGEECLGGAVI 356
>gi|355574204|ref|ZP_09044047.1| tRNA methyl transferase [Olsenella sp. oral taxon 809 str. F0356]
gi|354818494|gb|EHF02983.1| tRNA methyl transferase [Olsenella sp. oral taxon 809 str. F0356]
Length = 248
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
Query: 67 GIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDK 126
G ++E ETG L +H G + +T+GQ + L L RYVV D+E N+V+VS +
Sbjct: 95 GDVVEWETGRVLGRHDGAFLFTVGQRRGLDLGGGPARYVVSTDVERNVVYVSASLDCPGL 154
Query: 127 KRHLFHAGSLKLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDI--AVVQLSEDD 180
++ ++GLPP + H+ +L D D+ A V+ E
Sbjct: 155 WCRGLELSDVRWIAGLPPRAGRYLLRTRHTGELVEALVTPREPDVAHDLPWATVEFDEPR 214
Query: 181 QGLAAGQFAAFYQGRRCLGSGVILEAWDDQGFP 213
+ +A GQ A Y G CLG GV++ +G P
Sbjct: 215 RTVAPGQSAVVYDGLECLGGGVVVRG--PEGVP 245
>gi|403668311|ref|ZP_10933586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Kurthia sp. JC8E]
Length = 375
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 52/247 (21%)
Query: 10 DYVASGHYANVVHSSADHK----DKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPRLT- 62
DYVA+GHYA + + + KDQTYFL+ LS QL ++F + ++ PR+
Sbjct: 126 DYVATGHYARIGYDENGERVMLRGVDDNKDQTYFLNQLSPEQLEHVMFPIGEIVKPRVRE 185
Query: 63 ---------------------------------IPMEGIILEAETGDFLEKHRGFWFYTI 89
+P + +E G + KH G +YT+
Sbjct: 186 IAAEANLATAKKKDSTGICFIGERNFKEFLSQYLPAQPGNMETFEGKVMGKHDGLMYYTL 245
Query: 90 GQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG------L 142
GQ LG+ +VV KD++ N++ V + +++ DK ++ SLK + L
Sbjct: 246 GQRHGLGIGGDGEPWFVVGKDLDRNVLLVGQGFHN-DK----LYSTSLKAVKTNFSTNRL 300
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
P+K Y + E G+D V SE + + GQ Y G CLG
Sbjct: 301 LPQKFECTAKFRYRQTDVPVTVELIGDDQWNVTFSEPTRAITPGQSVVLYDGEICLGGAT 360
Query: 203 ILEAWDD 209
I E + D
Sbjct: 361 IDEVFKD 367
>gi|224542883|ref|ZP_03683422.1| hypothetical protein CATMIT_02077 [Catenibacterium mitsuokai DSM
15897]
gi|224524213|gb|EEF93318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Catenibacterium mitsuokai DSM 15897]
Length = 376
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 65/263 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D S++ DY+A+GHYA VVH+ + + KDQTYFL L+Q QL +F +
Sbjct: 118 LDYAKSIDADYIATGHYARVVHTEGKESVMLRGVDNNKDQTYFLCQLNQNQLNNSLFPIG 177
Query: 56 --------VLYPRLTIPM------EGII--------------LEAETGDFLE-------- 79
+ L +P+ GI + A++G ++
Sbjct: 178 ELTKPEVRRIAEELDLPVAHKKDSTGICFIGERDFREFLKNYIPAKSGKMVDIVSKKVIG 237
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-- 136
H+G +YTIGQ + LG+ +VV KD + NI+++++ D + L G+L
Sbjct: 238 DHQGIMYYTIGQRKGLGIGGNGEPWFVVGKDYDKNILYIAQG----DSNKWLLSHGALIT 293
Query: 137 --KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGG--------EDIAVVQLSEDDQGLAAG 186
+S PE Y+C+ + + E V + + + G
Sbjct: 294 DVNWVSKTKPEG-------EYDCTAKFRYRQKDNDVSLHFIDETTLYVTFKKPIKAVTPG 346
Query: 187 QFAAFYQGRRCLGSGVILEAWDD 209
Q A FY G CLG G I + + D
Sbjct: 347 QAAVFYDGDVCLGGGTIDKVYKD 369
>gi|282859182|ref|ZP_06268304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bivia JCVIHMP010]
gi|424900357|ref|ZP_18323899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bivia DSM 20514]
gi|282588001|gb|EFB93184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bivia JCVIHMP010]
gi|388592557|gb|EIM32796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella bivia DSM 20514]
Length = 386
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 108/271 (39%), Gaps = 82/271 (30%)
Query: 8 EFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
E+D +A+GHYA + +S D VKDQT FL+ + QL++ IF + Y
Sbjct: 121 EYDLIATGHYAQTKWIDGKKWLCTSPD-----PVKDQTDFLAQIYDWQLQKAIFPIGHYE 175
Query: 60 RLTI-------------------------------------PMEGIILEAETGDFLEKHR 82
+ + G I+E ETG + +H+
Sbjct: 176 KNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGENAGEIIELETGKKIGEHK 235
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
G WF+TIGQ + LGL + +V++KD+E NI++VS Y + F L L+
Sbjct: 236 GLWFHTIGQRKGLGLGGGPW-FVIKKDVEKNILYVSHGYDPETAYKRKFKVCDLHWLTVS 294
Query: 143 PPEKISQLHSVFYN-CSLTIEHC-----------------------EDG----GEDIAVV 174
P E + N C + +H E+G G + A++
Sbjct: 295 PSELEDSNGIILQNGCCSSFKHTLIPITFKIRHTPEYHQGYLEVLSEEGHLVEGSE-ALI 353
Query: 175 QLSEDDQGLAAGQFAAFY--QGRRCLGSGVI 203
+ G+A GQF Y + RC GSG I
Sbjct: 354 HAQKKIHGVAPGQFCVIYDEEHERCFGSGEI 384
>gi|254368479|ref|ZP_04984496.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp.
holarctica FSC022]
gi|157121373|gb|EDO65574.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp.
holarctica FSC022]
Length = 359
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 102/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA + +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQI-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIKLSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
>gi|172058087|ref|YP_001814547.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sibiricum
255-15]
gi|205816866|sp|B1YJE9.1|MNMA_EXIS2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|171990608|gb|ACB61530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Exiguobacterium sibiricum 255-15]
Length = 374
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 47/251 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---H 54
+D + D+VA+GHYA V+ +HK V KDQTYFL+ LSQ Q+ + +F H
Sbjct: 117 LDHAMRLGADFVATGHYARAVYEDGEHKLLRGVDTNKDQTYFLNQLSQDQIAKAMFPIGH 176
Query: 55 LVLYPRLTIPMEGIILEAET---------------------------------GDFLEKH 81
+ I E + A+ G + +H
Sbjct: 177 MEKSEVRKIAEEANLATAKKKDSTGICFIGERNFKQFLSQYLPAQPGEMRTLDGKTMGRH 236
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YT+GQ LG+ +VV K++++NI+FV + +++ +A + +
Sbjct: 237 DGLMYYTMGQRHGLGIGGDGEPWFVVGKNLQDNILFVEQGFHNELLYSEGLYASDISWTA 296
Query: 141 GLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+P + + F + +T+ + G D+A E + + GQ FY G
Sbjct: 297 TMPAGTEFRCTAKFRYRQTDTPVTVRVLDGGRLDVA---FDERQRAITPGQAVVFYDGDV 353
Query: 197 CLGSGVILEAW 207
CLG I +A+
Sbjct: 354 CLGGATIDDAY 364
>gi|189485341|ref|YP_001956282.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[uncultured Termite group 1 bacterium phylotype Rs-D17]
gi|205828982|sp|B1GZY9.1|MNMA_UNCTG RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|170287300|dbj|BAG13821.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[uncultured Termite group 1 bacterium phylotype Rs-D17]
Length = 360
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 97/244 (39%), Gaps = 52/244 (21%)
Query: 5 SSMEFDYVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
+ + FD A+GHYAN+ S+ +K KDQTYFL L+Q L IF L +Y
Sbjct: 125 TGLSFDKFATGHYANIGFDSSTNMYKLYKAADLNKDQTYFLYRLTQKTLSETIFPLGIYT 184
Query: 60 R-------------------------------LTIPMEGIILEAETGDFLEKHRGFWFYT 88
+ L P + + G L KH G W YT
Sbjct: 185 KEQVRNIAKKIGLPSAEKPDSQDFYCGDYNDILQFPANPGNIVDKNGRVLGKHNGIWNYT 244
Query: 89 IGQHQELGLLYIVYR--YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK 146
IG+ + LGLL YV+ + N+V + D A + S LPP+K
Sbjct: 245 IGKRKGLGLLGGTKDPLYVINISAKQNMVTIGTKE---DLYSSSLTAKKVSWCSILPPKK 301
Query: 147 ISQLHSVFYNCSLTIEHCEDGG-----EDIAV-VQLSEDDQGLAAGQFAAFYQGRRCLGS 200
++ + +H + ED +V V+ ++ + AGQ FY+ LG
Sbjct: 302 -----TIEATAKIRRQHKPEKAFIIPQEDSSVKVEFAQPQMSVTAGQSIVFYKDDTVLGG 356
Query: 201 GVIL 204
GVI+
Sbjct: 357 GVII 360
>gi|309781297|ref|ZP_07676033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia sp. 5_7_47FAA]
gi|404397042|ref|ZP_10988836.1| tRNA-specific 2-thiouridylase mnmA [Ralstonia sp. 5_2_56FAA]
gi|308919710|gb|EFP65371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia sp. 5_7_47FAA]
gi|348616984|gb|EGY66465.1| tRNA-specific 2-thiouridylase mnmA [Ralstonia sp. 5_2_56FAA]
Length = 370
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 101/259 (38%), Gaps = 61/259 (23%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + ++ DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLTAFDH-----TKDQSYFLHRLNQAQLSRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEMPKTKVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KD+ N ++V + + H
Sbjct: 225 TIGEHIGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
HA L ++G P + + L + + T+ DG +A E + GQ
Sbjct: 285 HADDLSWVAGQAPVEGTNLGAKTRYRQADAPCTVARAGDGALTLA---FPEAQWAVTPGQ 341
Query: 188 FAAFYQGRRCLGSGVILEA 206
A Y G CLG G+I A
Sbjct: 342 SAVLYDGEVCLGGGIISAA 360
>gi|294625260|ref|ZP_06703899.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
[Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292600434|gb|EFF44532.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
[Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 378
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 102/255 (40%), Gaps = 59/255 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 169 LEKSTLRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ NN+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTI------EHCEDGGEDIAVVQL--SEDDQGLAAGQF 188
++G PP + ++C+ EHC +D VQ+ + + GQ
Sbjct: 289 HWVTGAPPARR-------FSCTAQTRYRQPDEHCTVDVQDDGSVQVRFERPQRAVTPGQS 341
Query: 189 AAFYQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 342 LVLYDGEECLGGAVI 356
>gi|386714916|ref|YP_006181239.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halobacillus halophilus DSM 2266]
gi|384074472|emb|CCG45965.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halobacillus halophilus DSM 2266]
Length = 370
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 47/247 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
+D S+ DY+A+GHYA V ++ H+ + KDQTYFL+ L+Q L +++F L
Sbjct: 113 LDHALSLGADYLATGHYAQVQENNGVHEMLRGIDRNKDQTYFLNQLTQEMLEKVMFPLGH 172
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
+ + P + +E G+ +H
Sbjct: 173 LEKKQVREIAEQHDLATAKKKDSTGICFIGERNFKEFLSEYLPAQPGNMETLDGEVKGQH 232
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YT+GQ Q LG+ +VV K++E NI++V + ++ A +
Sbjct: 233 EGLMYYTLGQRQGLGIGGAGDPWFVVGKNVEENILYVGQGFHHDALYSDGLIASEANWTT 292
Query: 141 GLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
G PE+ + + F + +T++ DG + E ++ + GQ FY G
Sbjct: 293 GHGPEEAMECTAKFRYRQEDSHVTVQPMTDGRWKVI---FHEPERAITPGQAVVFYDGEV 349
Query: 197 CLGSGVI 203
CLG I
Sbjct: 350 CLGGATI 356
>gi|421861837|ref|ZP_16293756.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Paenibacillus popilliae ATCC 14706]
gi|410828600|dbj|GAC44193.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Paenibacillus popilliae ATCC 14706]
Length = 369
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 98/240 (40%), Gaps = 49/240 (20%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYP------- 59
DYVA+GHYA +V + K + KDQTYFL+ L+Q QL R +F + P
Sbjct: 123 DYVATGHYARIVRENGQAKLLRGIDRNKDQTYFLNALNQEQLARAMFPIGHLPKPDVRRI 182
Query: 60 -----------------------------RLTIPME-GIILEAETGDFLEKHRGFWFYTI 89
R +P + G +++ +G+ +H G +YT+
Sbjct: 183 AEEAGLATAKKKDSTGVCFIGERNFKEFLRQYLPAQPGDMIDIVSGEVKGRHDGLMYYTL 242
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK 146
GQ Q LG+ +V EKD+ N ++V + A + ++G P++
Sbjct: 243 GQRQGLGIGGSGTGEPWFVTEKDVARNRLYVVQGESHPSLYSTGLRATGVSWIAGEAPDR 302
Query: 147 ISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ Y + + IE DG + V + + + GQ FY G CLG G I
Sbjct: 303 LHCTAKFRYRQPDQEVAIERSGDGAYE---VTFAMQQKAVTPGQAVVFYDGEVCLGGGTI 359
>gi|294501356|ref|YP_003565056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus megaterium QM B1551]
gi|294351293|gb|ADE71622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus megaterium QM B1551]
Length = 370
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 57/243 (23%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V + ++K V KDQTYFL+ L Q QL +++F + + +
Sbjct: 123 DYLATGHYARVAYRDGEYKMLRGVDGNKDQTYFLNQLGQDQLSKVMFPIGEIEKSKVREI 182
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + +++ G+ KH G +YTIG
Sbjct: 183 AKEAGLATATKKDSTGICFIGERNFKEFLSQYLPAQPGVMQTLDGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS--------- 140
Q LG+ +VV KD+E N+++V + +++ L ++ SL +
Sbjct: 243 QRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHN-----ELLYSTSLTATNVSWVSERDW 297
Query: 141 GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
P ++ + ++T+E +D D V +E + + GQ FY+ CLG
Sbjct: 298 SSPMTCTAKFRYRQTDSAVTVEKVDD---DTIKVIFAEPVRAITPGQAVVFYKDDECLGG 354
Query: 201 GVI 203
I
Sbjct: 355 ATI 357
>gi|381157771|ref|ZP_09867004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiorhodovibrio sp. 970]
gi|380879129|gb|EIC21220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thiorhodovibrio sp. 970]
Length = 363
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 103/266 (38%), Gaps = 74/266 (27%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
+D ++ D++A+GHYA V+H + D+ S+ KDQTYFL L + QL R++F
Sbjct: 111 LDHALTLGADWIATGHYARVMHQA----DRASLYLARDANKDQTYFLHRLDREQLGRVLF 166
Query: 54 HL--VLYPRLT----------------------------------IPMEGIILEAETGDF 77
L + P + +P E +E G
Sbjct: 167 PLADLTKPEIRAMAESLGLANASKKDSTGICFIGERRFADFLARYLPREPGPIETPEGQV 226
Query: 78 LEKHRGFWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFH 132
L +H+G +YTIGQ Q LG+ +V KD N++ V + LF
Sbjct: 227 LGEHQGLAYYTIGQRQGLGIGGQAGAAEAPWFVAAKDPAKNVLIVVQG----GNHPLLFA 282
Query: 133 AG----SLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV--------VQLSEDD 180
G L +SG PP ++C + H + V V +
Sbjct: 283 EGLSGEQLHWISGAPPAPAP------FDCLCRLRHRQPLQACTLVEYHKGHCQVHFATPQ 336
Query: 181 QGLAAGQFAAFYQGRRCLGSGVILEA 206
+ + GQ A FY G RCLG +I A
Sbjct: 337 RAVTPGQSAVFYYGDRCLGGCIITSA 362
>gi|435854502|ref|YP_007315821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halobacteroides halobius DSM 5150]
gi|433670913|gb|AGB41728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halobacteroides halobius DSM 5150]
Length = 358
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 99/241 (41%), Gaps = 53/241 (21%)
Query: 11 YVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLY--------- 58
Y+A+GHYA + ++ + K + KDQTY L +L+Q QL +F L Y
Sbjct: 125 YMATGHYAKIERTAERNLLKRATDPKKDQTYMLYNLTQEQLEHTLFPLANYKKTKTRKLA 184
Query: 59 -------------------------PRL------TIPMEGIILEAETGDFLEKHRGFWFY 87
PR I G IL+ E G+ L +H G FY
Sbjct: 185 KEYGLKRVYNKPDSQEICFIPDDDYPRFLKEHYPDIIEPGPILDLE-GNKLGEHDGLPFY 243
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKK---RHLFHAGSLKLLSGLPP 144
TIGQ + LGL YVVE D +NN V V N F K+ + L + KL P
Sbjct: 244 TIGQRKGLGLETHKRWYVVELDADNNAVIVGDNEDVFAKELIAKDLNWIATAKLTE--PK 301
Query: 145 EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
E +++ TI ED + VV E + + GQ FY G +G G+I
Sbjct: 302 EVDAKIRYNAPAAKATIYPIED---KVKVV-FKEKQRAITPGQSIVFYDGDLVVGGGLIK 357
Query: 205 E 205
E
Sbjct: 358 E 358
>gi|257125929|ref|YP_003164043.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Leptotrichia buccalis C-1013-b]
gi|257049868|gb|ACV39052.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Leptotrichia buccalis C-1013-b]
Length = 364
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 101/261 (38%), Gaps = 70/261 (26%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
+D + DYVA+GHYA ++H D + K ++ KDQTYFL L+Q QL +++F
Sbjct: 111 LDYAMKIGADYVATGHYARIIHEEKDGEMKSTMLRGIDDNKDQTYFLCQLNQEQLEKVLF 170
Query: 54 HLVLYPRLTI------------------------------------PMEGIILEAETGDF 77
L Y + I P +G + G
Sbjct: 171 PLGEYTKPKIREIAEKYNLATAKKKDSTGICFIGERDFNKFLSQYLPAKGGNIVNTQGKV 230
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFH 132
L H G +YTIGQ + +G+ +VV+KD+E N + V++
Sbjct: 231 LGHHNGLMYYTIGQRKGIGIGNTKEGTGEPWFVVDKDLEKNELIVTQG------------ 278
Query: 133 AGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQ----------LSEDDQG 182
S+ GL + ++ V + T++ + AV+ +E +
Sbjct: 279 DNSVLYSKGLIATDFNFINEVQFPLECTVKFRYRQKDTKAVISKLNENEYEVIFNEPQKA 338
Query: 183 LAAGQFAAFYQGRRCLGSGVI 203
+ GQ Y G CLG G+I
Sbjct: 339 VTLGQIVVAYDGEVCLGGGII 359
>gi|373462956|ref|ZP_09554616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus kisonensis F0435]
gi|371765669|gb|EHO53975.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus kisonensis F0435]
Length = 374
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 50/255 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DY+A+GHYA + + H + KDQTYFLS LS QL R++F +
Sbjct: 113 LDYALELGADYIATGHYAQLTRDADGHNHLLRASDGNKDQTYFLSQLSADQLDRVMFPIG 172
Query: 56 -VLYPRL-TIPMEGIILEAET---------------------------------GDFLEK 80
++ P + I E + A+ G+
Sbjct: 173 NMVKPDVRKIAREAGLATADKKDSVGICFIGEKNFKNFLGHYLPATPGKMMTVDGEVKGN 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ + +VV KD++ NI++V + Y++ A +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKQNILYVGKGYHNPLLYADYLEASDI 292
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ L K + F + +T+ H D G+ + V + + GQ FY
Sbjct: 293 HWVNNLDRGKDFHCTAKFRYRQKDTGVTV-HISDDGQSVRV-DFDAPVRAITPGQAVVFY 350
Query: 193 QGRRCLGSGVILEAW 207
G CLGS +I A+
Sbjct: 351 DGDECLGSAIIDAAY 365
>gi|384044804|ref|YP_005492821.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
PP-loop ATPase [Bacillus megaterium WSH-002]
gi|345442495|gb|AEN87512.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, PP-loop ATPase [Bacillus megaterium
WSH-002]
Length = 370
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 101/243 (41%), Gaps = 57/243 (23%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V + ++K V KDQTYFL+ L Q QL +++F + + +
Sbjct: 123 DYLATGHYARVAYRDGEYKMLRGVDGNKDQTYFLNQLGQDQLSKVMFPIGEIEKSKVREI 182
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + +++ G+ KH G +YTIG
Sbjct: 183 AKEAGLATATKKDSTGICFIGERNFKEFLSQYLPAQPGVMQTLDGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS--------- 140
Q LG+ +VV KD+E N+++V + +++ L ++ SL +
Sbjct: 243 QRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHN-----ELLYSTSLTATNISWVSDRDW 297
Query: 141 GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
P ++ + ++T+E +D D V +E + + GQ FY+ CLG
Sbjct: 298 SSPMTCTAKFRYRQTDSAVTVEKVDD---DTIKVIFAEPVRAITPGQAVVFYKDDECLGG 354
Query: 201 GVI 203
I
Sbjct: 355 ATI 357
>gi|308070334|ref|YP_003871939.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus polymyxa E681]
gi|305859613|gb|ADM71401.1| Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus polymyxa E681]
Length = 373
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 99/247 (40%), Gaps = 60/247 (24%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA VV + S KDQTYFL+ LSQ QL R +F + P+ +
Sbjct: 123 DYVATGHYAQVVEEDGHFTLLRGVDSNKDQTYFLNALSQTQLSRAMFPIGHLPKPEVRKI 182
Query: 64 ---------------------------------PMEG-IILEAETGDFLEKHRGFWFYTI 89
P +G +++ TG+ +H G +YT+
Sbjct: 183 AEAAGLYTAKKKDSTGVCFIGERNFKEFLSGYLPAKGGDMVDIATGEVKGRHDGLMYYTL 242
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFH----AGSLKLLSGL 142
GQ Q LG+ +V +KD+E NI++V + D+ L+ A + + G
Sbjct: 243 GQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQG----DRHHSLYSTSLIATDVNWIEGA 298
Query: 143 PPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
S+ + +T++ DG V + + GQ FY G R
Sbjct: 299 DTRPTSEFRCTAKFRYRQPDQQVTLQWLADG---TVHVIFDVHQKAITPGQAVVFYDGER 355
Query: 197 CLGSGVI 203
CLG G I
Sbjct: 356 CLGGGTI 362
>gi|374325359|ref|YP_005078488.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus terrae HPL-003]
gi|357204368|gb|AET62265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus terrae HPL-003]
Length = 375
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 100/247 (40%), Gaps = 60/247 (24%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA VV + S KDQTYFL+ LSQ QL R +F + P+ +
Sbjct: 125 DYVATGHYARVVDEDGHFTLLRGVDSNKDQTYFLNALSQKQLSRAMFPIGHLPKPEVRKI 184
Query: 64 ---------------------------------PMEG-IILEAETGDFLEKHRGFWFYTI 89
P +G +++ TG+ +H G +YT+
Sbjct: 185 AEAAGLYTAKKKDSTGVCFIGERNFKEFLSGYLPAKGGDMVDIATGEVKGRHDGLMYYTL 244
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFH----AGSLKLLSGL 142
GQ Q LG+ +V +KD+E NI++V + D+ L+ A + ++G
Sbjct: 245 GQRQGLGIGGSGSGEPWFVADKDLERNILYVVQG----DRHHSLYSTSLIATDVNWIAGA 300
Query: 143 PPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+ + +T++ EDG V + + GQ FY G R
Sbjct: 301 DTRPSGEFRCTAKFRYRQPDQQVTLQWLEDG---TVHVVFDVHQKAITPGQAVVFYDGER 357
Query: 197 CLGSGVI 203
CLG G I
Sbjct: 358 CLGGGTI 364
>gi|329909731|ref|ZP_08275115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Oxalobacteraceae bacterium IMCC9480]
gi|327546403|gb|EGF31411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Oxalobacteraceae bacterium IMCC9480]
Length = 369
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 101/248 (40%), Gaps = 56/248 (22%)
Query: 10 DYVASGHYANVVHSSADH------KDKPSVKDQTYFLSHLSQAQLRRLIFHL-------- 55
D +A+GHYA V S++D K KDQ+YFL L+QAQL + +F L
Sbjct: 119 DLIATGHYARVRESASDAGRFELLKAIDHTKDQSYFLHRLNQAQLSKTLFPLGEIRKTEV 178
Query: 56 -VLYPRLTIP------MEGIILEAET---------------------GDFLEKHRGFWFY 87
+ +L +P GI E GD + +H G FY
Sbjct: 179 RKMAEQLGLPNAAKKDSTGICFIGERPFREFLNRYLSYQPGPMKTPEGDTIGEHVGLSFY 238
Query: 88 TIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK 137
T+GQ + +G+ I YV KDI +N ++V + + A L
Sbjct: 239 TLGQRKGIGIGGIKAHQNANGSSDAWYVARKDIASNTLYVVQGHDHPWLLSASLEADQLS 298
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQ--GLAAGQFAAFYQGR 195
++G PP+ QL + + C G D +QL+ D + GQ A Y+G
Sbjct: 299 WIAGAPPDD-GQLSAKTRYRQADVP-CHVGMVDAQRLQLAFDASQWAVTPGQSAVLYRGD 356
Query: 196 RCLGSGVI 203
CLG G+I
Sbjct: 357 VCLGGGII 364
>gi|406971338|gb|EKD95447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
partial [uncultured bacterium]
Length = 352
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 60/245 (24%)
Query: 9 FDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL---------V 56
F+Y+A+GHYA +++ S +K V KDQ+YFL L Q QL + +F +
Sbjct: 117 FNYIATGHYARILNDSGVYKLLKGVDHSKDQSYFLYLLGQEQLSKTLFPVGDKHKKEVRA 176
Query: 57 LYPRLTIPM----------------------------EGIILEAETGDFLEKHRGFWFYT 88
+ + +P EG ++ ++ G+ + KH G WFYT
Sbjct: 177 IAKKTGLPTHSKTDSVGICFIGDIDVKEFLKQRLPNKEGNVVNSK-GEVIGKHEGIWFYT 235
Query: 89 IGQHQELGL--LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK 146
IGQ + + Y+++K++ N + ++ + +R F L +S E
Sbjct: 236 IGQRHGFSIDKYQGLPMYIIDKNVGKNELVAG---FAKEAERKSFEVSDLHWIS----ED 288
Query: 147 ISQLHSVFYNCSLTIEHCED--------GGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
+ + H + +C + I H D GGE+ V+ L G+A GQ A FY G +
Sbjct: 289 LLKSH-ISISCDVRIRHLGDLYKAALSNGGENGKVL-LENSVFGVAPGQSAVFYIGDELV 346
Query: 199 GSGVI 203
G G+I
Sbjct: 347 GGGII 351
>gi|337754115|ref|YP_004646626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella sp. TX077308]
gi|336445720|gb|AEI35026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella sp. TX077308]
Length = 359
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 97/244 (39%), Gaps = 52/244 (21%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
DY+A+GHYA + K KDQTYFL L Q QL++ +F
Sbjct: 119 DYIATGHYARTKVAEDGSVQLVKGLDESKDQTYFLYTLGQEQLKQTMFPIGDIEKSKVRE 178
Query: 54 -----HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYTI 89
LV + + I E + DFL K H G +YTI
Sbjct: 179 IAKENKLVTFDKKDSTGICFIGERKFKDFLSKFLPAQRGEIHDENGIKIGMHDGLMYYTI 238
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG-LP 143
GQ Q LG+ + R + +KD+ENN++ + + + A L ++G P
Sbjct: 239 GQRQGLGIGGVKNRPEIPWFAAQKDLENNVLVAVQGHDHPMLFKDTLQAIDLSWVAGSAP 298
Query: 144 PEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+ V Y + S ++ EDG ++ E + + GQ FY G CLG
Sbjct: 299 ADSFRCSAKVRYRQKDQSCNVQINEDGSVNVV---FDEPQRAITPGQSVVFYDGEVCLGG 355
Query: 201 GVIL 204
G+I+
Sbjct: 356 GIII 359
>gi|336114488|ref|YP_004569255.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus coagulans 2-6]
gi|335367918|gb|AEH53869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus coagulans 2-6]
Length = 371
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 41/242 (16%)
Query: 10 DYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DY+A+GHYA V + ++K KDQTYFL+ L Q QL R++F + + PR+
Sbjct: 123 DYLATGHYARVAYRDGEYKMLRGADGNKDQTYFLNQLGQHQLSRVMFPIGELEKPRVREI 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ G + +H G +YTIG
Sbjct: 183 AKEAGLATANKKDSTGICFIGERNFKEFLSHYLPAQKGLMKTLDGKVMGEHEGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL-PPEKIS 148
Q LG+ + V KD++ N+++V + ++ +SG PPE+
Sbjct: 243 QRHGLGIGGSGEPWFAVGKDLKENVLYVEQGFHHPALYSDYMTGVKANWVSGRKPPEEFR 302
Query: 149 QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWD 208
Y + G+D V E + + GQ FY G CLG I + +
Sbjct: 303 CTAKFRYRQPDQKVTVQLLGDDEVKVIYDEPVRAVTPGQAVVFYNGEECLGGATIDKIYK 362
Query: 209 DQ 210
++
Sbjct: 363 NE 364
>gi|422422238|ref|ZP_16499191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri FSL S4-171]
gi|313637741|gb|EFS03100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Listeria seeligeri FSL S4-171]
Length = 371
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ D+VA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADFVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQEQLQKVMFPLGGMEKKE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + ++ G+ L KH G +
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGKMQTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +V KD++ NI+FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ H D + A V +E + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTV-HLRD--NNTAEVVFAEPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>gi|302336036|ref|YP_003801243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Olsenella uli DSM 7084]
gi|301319876|gb|ADK68363.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Olsenella uli DSM 7084]
Length = 380
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 65/137 (47%)
Query: 67 GIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDK 126
G I+E ETG L +H G + +T+GQ + L L RYVV D E+N+V+V+ +
Sbjct: 237 GDIVEWETGTVLGRHDGAFLFTVGQRKGLDLGGGPARYVVTTDTESNVVYVTADRSCPAL 296
Query: 127 KRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
+ ++G+PP + + + L H + V L++ + +A G
Sbjct: 297 WCRRLELSDVLWIAGVPPAEGDYVVRTRHTGELRPAHVMPHADGTVSVDLAKPMRAVAPG 356
Query: 187 QFAAFYQGRRCLGSGVI 203
Q A Y G CLG G+I
Sbjct: 357 QSAVIYDGLVCLGGGII 373
>gi|334347602|ref|XP_001378676.2| PREDICTED: hypothetical protein LOC100028714 [Monodelphis domestica]
Length = 1112
Score = 68.2 bits (165), Expect = 4e-09, Method: Composition-based stats.
Identities = 64/220 (29%), Positives = 91/220 (41%), Gaps = 55/220 (25%)
Query: 34 KDQTYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI----------- 63
KDQT+FLS Q LRR +F H VL + ++
Sbjct: 864 KDQTFFLSQAPQEALRRTLFPLGGLTKAFVKKIAAENGLHHVLQRKESMGICFIGKRHLE 923
Query: 64 --------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIV 115
P G + E L H+G + +T+GQ ++G L + YVVEKD+ + V
Sbjct: 924 SFLLQYLQPQPGNFVSIEDNKVLGTHQGCFLFTLGQGAKIGGLRDPW-YVVEKDLRSGDV 982
Query: 116 FVSRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLH------SVFYNCSLTIEHC 164
FV+ R L G + ++ PP +K+ H C LT+
Sbjct: 983 FVAPGPDHPALYRDLLRTGRVHWIAEEPPAPLVQDKMMDCHFRWRHQMALVPCVLTLN-- 1040
Query: 165 EDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+DG + V+ + LA GQFA FY+G CLGSG IL
Sbjct: 1041 QDGTVWVTAVKPM---KALAPGQFAVFYKGDECLGSGKIL 1077
>gi|423069835|ref|ZP_17058620.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus intermedius
F0395]
gi|355363709|gb|EHG11445.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus intermedius
F0395]
Length = 373
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 101/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QLR+ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDEDGLVHMLRGKDNNKDQTYFLSQLSQEQLRKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E +L H G G+ Q
Sbjct: 173 HLEKPEVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAHPGRMMTLDGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D A V +E + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKATVNFAELQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGEECLGGGLIDNAY 364
>gi|418965914|ref|ZP_13517670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus constellatus subsp. constellatus SK53]
gi|383341165|gb|EID19431.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus constellatus subsp. constellatus SK53]
Length = 373
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 101/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QLR+ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDEDGLVHMLRGKDNNKDQTYFLSQLSQEQLRKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E +L H G G+ Q
Sbjct: 173 HLEKPEVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAHPGRMMTLDGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D A V +E + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKATVNFAELQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGEECLGGGLIDNAY 364
>gi|15606458|ref|NP_213838.1| tRNA-specific 2-thiouridylase MnmA [Aquifex aeolicus VF5]
gi|6226257|sp|O67274.1|MNMA_AQUAE RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|2983672|gb|AAC07238.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5]
Length = 356
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 56/245 (22%)
Query: 8 EFDYVASGHYANV----VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI 63
+ D +A+GHYA + + + K +DQTYFLS + + L L F L Y + +
Sbjct: 120 DIDKLATGHYAKIEEDKKYGLVIKRPKDRKRDQTYFLSLVRREDLELLTFPLGAYTKEEV 179
Query: 64 P------------------------------MEGII------LEAETGDFLEKHRGFWFY 87
+EGI+ ++ +G L +H G + Y
Sbjct: 180 REIAKRYGLEVAQKRDSQEVCFLMGKSPGEYLEGILGKQRGLIKHVSGKVLGEHEGVYRY 239
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHL----FHAGSLKLLSGLP 143
TIGQ + LG+ Y YV++ D + N + V Y ++ K + FH +P
Sbjct: 240 TIGQRRGLGISYGKPVYVIDIDAKTNTLIVGEEEYLYNDKLLVKEINFH---------VP 290
Query: 144 PEKISQLHS--VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
EK + + + + + +E E E +V+ ED +G+ GQ AFY G LG G
Sbjct: 291 LEKWENVSAQIRYRHKPVPVERIEKTEEGF-LVKFKEDVRGITPGQVVAFYDGDVLLGGG 349
Query: 202 VILEA 206
+I E+
Sbjct: 350 IIEES 354
>gi|422012554|ref|ZP_16359227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Actinomyces georgiae F0490]
gi|394755030|gb|EJF38311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Actinomyces georgiae F0490]
Length = 374
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 103/255 (40%), Gaps = 57/255 (22%)
Query: 2 DAISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLY 58
D ++ FD V +GHYA +V H+ + KDQ+Y L+ + +LRR++ L
Sbjct: 112 DRARALGFDAVCTGHYAAIVEGEQGPELHRGADAAKDQSYVLAVMGPDELRRVVLPLGEA 171
Query: 59 P----------RLT--------------IP--------------MEGIILEAETGDFLEK 80
P RL IP EG I+ + G L +
Sbjct: 172 PSKAWVRAEAERLGLGVSDKPDSYDICFIPDGDTQGFLRAHLGSAEGEIVTPD-GRVLGR 230
Query: 81 HRGFWFYTIGQHQELGLLYIV----YRYVVEKDIENNIVFV-SRNYYSFDKKRHLFHAGS 135
H G+W YT+GQ + LG+ RYV+E E N V V +R + D+ + + +
Sbjct: 231 HGGYWNYTVGQRKGLGIGVPAPDGRPRYVLETRPETNQVVVGARELLTVDR---IECSDA 287
Query: 136 LKLLSGLPPEKIS-------QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
+ L P + S + H + + G VV L+E +G+A GQ
Sbjct: 288 VWLAPDDPGDAASGGLFAQFRAHGRPVPVASLVREAPGGAGARIVVGLAEAARGVARGQS 347
Query: 189 AAFYQGRRCLGSGVI 203
Y+G R LG G I
Sbjct: 348 LVVYRGDRVLGEGTI 362
>gi|434381205|ref|YP_006702988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira pilosicoli WesB]
gi|404429854|emb|CCG55900.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira pilosicoli WesB]
Length = 353
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 40/165 (24%)
Query: 2 DAI--SSMEFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFH 54
DAI S + FD A+GHYA V + + + K +KDQ+YFL L+Q QL +++F
Sbjct: 115 DAIEKSGLTFDKFATGHYAGVRYDEEEKRYILLRGKNHIKDQSYFLYRLTQEQLSKIMFP 174
Query: 55 LVL-------------------------------YPRL-TIPMEGIILEAETGDFLEKHR 82
+ Y RL +EG I+ ET + L KH
Sbjct: 175 MYEMTKEETRSLAREYNLIDVAEKNDSQDFFAGEYHRLFDEDLEGNIVHIETNEILGKHN 234
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV-SRNYYSFDK 126
G W YT+GQ + LG+ Y +++ D N V+V ++N+ DK
Sbjct: 235 GIWHYTVGQRKGLGIAYKEPLFIISLDSSTNTVYVGNKNHTIIDK 279
>gi|241664140|ref|YP_002982500.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia pickettii 12D]
gi|240866167|gb|ACS63828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia pickettii 12D]
Length = 370
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 100/259 (38%), Gaps = 61/259 (23%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + + DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLKAFDH-----TKDQSYFLHRLNQAQLSRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEMPKTKVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KD+ N ++V + + H
Sbjct: 225 TIGEHIGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
HA L ++G P + + L + + T+ DG +A E + GQ
Sbjct: 285 HADDLSWVAGQAPVEGTDLGAKTRYRQADAPCTVARAGDGALTLA---FPEAQWAVTPGQ 341
Query: 188 FAAFYQGRRCLGSGVILEA 206
A Y G CLG G+I A
Sbjct: 342 SAVLYDGEVCLGGGIISAA 360
>gi|300871209|ref|YP_003786082.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira pilosicoli 95/1000]
gi|431808034|ref|YP_007234932.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira pilosicoli P43/6/78]
gi|300688910|gb|ADK31581.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira pilosicoli 95/1000]
gi|430781393|gb|AGA66677.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira pilosicoli P43/6/78]
Length = 353
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 40/165 (24%)
Query: 2 DAI--SSMEFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFH 54
DAI S + FD A+GHYA V + + + K +KDQ+YFL L+Q QL +++F
Sbjct: 115 DAIEKSGLTFDKFATGHYAGVRYDEEEKRYILLRGKNHIKDQSYFLYRLTQEQLSKIMFP 174
Query: 55 LVL-------------------------------YPRL-TIPMEGIILEAETGDFLEKHR 82
+ Y RL +EG I+ ET + L KH
Sbjct: 175 MYEMTKEETRSLAREYNLIDVAEKNDSQDFFAGEYHRLFDEDLEGNIVHIETNEILGKHN 234
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV-SRNYYSFDK 126
G W YT+GQ + LG+ Y +++ D N V+V ++N+ DK
Sbjct: 235 GIWHYTVGQRKGLGIAYKEPLFIISLDSSTNTVYVGNKNHTIIDK 279
>gi|21242742|ref|NP_642324.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv.
citri str. 306]
gi|24638307|sp|Q8PL08.1|MNMA_XANAC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|21108220|gb|AAM36860.1| tRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306]
Length = 378
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 169 LEKSTLRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ NN+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + S T++ +DG V+ + + GQ Y
Sbjct: 289 HWVTGAPPARRFSCTAQTRYRQPDESCTVDVQDDGS---VQVRFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G CLG VI
Sbjct: 346 DGEECLGGAVI 356
>gi|410926013|ref|XP_003976473.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Takifugu rubripes]
Length = 413
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 110/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKPS---------------------VKDQ 36
AI+++ D VA+GHYA + HK P+ +KDQ
Sbjct: 114 AINTLGADAVATGHYARTSQEDEEVFEQKHKASPTTLFRDRFETRNPVRLHKGADHLKDQ 173
Query: 37 TYFLSHLSQAQLRRLIFHL-------------------VLYPRLTI-------------- 63
T+FLS +SQ LR+ +F L VL + ++
Sbjct: 174 TFFLSQISQDALRQTLFPLAGLTKDFVKKIAAEAGFQHVLKRKESMGICFIGERNFENFI 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G ++ E G HRG++ T+GQ +G + +VV+KDI VFV+
Sbjct: 234 LEYLEPKPGNLVSIEDGTVRGTHRGWFTLTLGQRARIGGQRDAW-FVVDKDITTGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPPEKIS-----QLHSVFYN------CSLTIEHCEDG 167
N R ++ PP +++ + H F + C++T+ DG
Sbjct: 293 PNTNHPALYRDTLRTDRFHWVAVDPPPELARTQMMECHFRFIHQMPLTPCTVTLN--LDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ LS + L GQ+A Y+G CLGSG I++
Sbjct: 351 S---VWISLSHSVRALTPGQYAVLYKGDECLGSGKIIQ 385
>gi|323524770|ref|YP_004226923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia sp. CCGE1001]
gi|323381772|gb|ADX53863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia sp. CCGE1001]
Length = 381
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 105/261 (40%), Gaps = 63/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSA--------DHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D S+ + +A+GHYA V ++ DH KDQ+YFL L+QAQL + +
Sbjct: 110 LDHAMSLGAETIATGHYARVRENNGRFELLKAFDH-----TKDQSYFLHRLNQAQLSKTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTRVRKIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLPTQPGPMKTTDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT GQ + +GL +V KDI +N ++V++ + H
Sbjct: 225 VVGEHIGLAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHRL 284
Query: 132 HAGSLKLLSGLPP-EKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQ--GLAA 185
AG+ ++G PP E + Y + T GG+ + QL+ DD +
Sbjct: 285 TAGNTSWVAGEPPAEGFACGAKTRYRQADARCTFSAAGAGGD---LFQLTFDDAQWAVTP 341
Query: 186 GQFAAFYQGRRCLGSGVILEA 206
GQ A Y G CLG G+I +A
Sbjct: 342 GQSAVLYDGDVCLGGGIIEQA 362
>gi|220935011|ref|YP_002513910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219996321|gb|ACL72923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 364
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 47/250 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+D + D +A+GHYA + + + + KDQTYFL L Q QL + +F +
Sbjct: 111 LDYARQLGADGIATGHYARIGRDGESYTLLAGRDANKDQTYFLYTLGQEQLSKSLFPIGE 170
Query: 56 VLYPRLT-------IPM----------------------------EGIILEAETGDFLEK 80
+ PR+ +P+ G I++ E G+ L +
Sbjct: 171 LEKPRVRDLARAHGLPVFAKKDSTGICFIGERRFRDFLQTYLPARPGEIVDPE-GNRLGE 229
Query: 81 HRGFWFYTIGQHQELGLLYI-----VYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H+G +YT+GQ Q LG+ + YVV+KD+ +N + V++ + A
Sbjct: 230 HQGLMYYTLGQRQGLGIGGVHDAGEAPWYVVDKDMAHNRLIVAQGHDHPLMHHRGLEAQD 289
Query: 136 LKLLSG-LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
L +SG P E S + + L E + V E + +A GQ FYQ
Sbjct: 290 LHWVSGEAPREAFSCRARIRHRQPLQACRVEPHADGRVRVLFDEAQRAIAPGQSVVFYQE 349
Query: 195 RRCLGSGVIL 204
RCLG G+I+
Sbjct: 350 DRCLGGGIIV 359
>gi|134302735|ref|YP_001122703.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421752654|ref|ZP_16189673.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis AS_713]
gi|421754518|ref|ZP_16191489.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 831]
gi|421758247|ref|ZP_16195102.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 80700103]
gi|421760072|ref|ZP_16196895.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 70102010]
gi|424675397|ref|ZP_18112303.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 70001275]
gi|166234854|sp|A4J081.1|MNMA_FRATW RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|134050512|gb|ABO47583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis WY96-3418]
gi|409084542|gb|EKM84715.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 831]
gi|409084568|gb|EKM84740.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis AS_713]
gi|409089663|gb|EKM89698.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 70102010]
gi|409090017|gb|EKM90043.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 80700103]
gi|417433930|gb|EKT88913.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 70001275]
Length = 359
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
>gi|187930950|ref|YP_001890934.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254371318|ref|ZP_04987320.1| hypothetical protein FTBG_01100 [Francisella tularensis subsp.
tularensis FSC033]
gi|379717913|ref|YP_005306249.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis TIGB03]
gi|379726516|ref|YP_005318702.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis TI0902]
gi|421756352|ref|ZP_16193269.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 80700075]
gi|71658014|sp|Q5NEF9.2|MNMA_FRATT RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205816649|sp|B2SEJ7.1|MNMA_FRATM RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205822328|sp|Q14FW2.2|MNMA_FRAT1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|151569558|gb|EDN35212.1| hypothetical protein FTBG_01100 [Francisella tularensis subsp.
tularensis FSC033]
gi|187711859|gb|ACD30156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. mediasiatica FSC147]
gi|377827965|gb|AFB81213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis TI0902]
gi|377829590|gb|AFB79669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis TIGB03]
gi|409084814|gb|EKM84976.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis 80700075]
Length = 359
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
>gi|110596963|ref|ZP_01385253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlorobium ferrooxidans DSM 13031]
gi|110341650|gb|EAT60110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlorobium ferrooxidans DSM 13031]
Length = 361
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 105/253 (41%), Gaps = 46/253 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL-- 55
+ + +E D++A+GH+A+ S ++ V KDQ+YFL LSQ+ L + + L
Sbjct: 108 FEGLKLLEADFIATGHFASTSFSDGRYRLYKGVDPEKDQSYFLWMLSQSDLAKTLLPLGE 167
Query: 56 VLYPRLT---------------------IP-------MEGII-----------LEAETGD 76
++ P + +P +EG I + E G
Sbjct: 168 MVKPEVRRLAREFGVRAAEKKESQEICFVPQDDYCSYLEGAIPGLAEKVSGGEIVDEAGT 227
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
+ KHRG+ FYTIGQ + LG+ V YV E D E+N + V + S + R L +G
Sbjct: 228 VIGKHRGYPFYTIGQRRGLGVAAKVPLYVTEIDPEHNRIHVGQK--SALETRKLVASGLN 285
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+ ++ L + Y T E ++ V G++ GQ A FY+
Sbjct: 286 WIGIDGVNAPVTALGKIRYRDKETPCTIEPLADNEVAVAFDAPKSGVSTGQAAVFYRESE 345
Query: 197 CLGSGVILEAWDD 209
LG G I + D
Sbjct: 346 VLGGGFITKVIHD 358
>gi|23099469|ref|NP_692935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
[Oceanobacillus iheyensis HTE831]
gi|30173412|sp|Q8CXC7.1|MNMA_OCEIH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|22777698|dbj|BAC13970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Oceanobacillus iheyensis HTE831]
Length = 371
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 58/253 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DY+A+GHYA V + KDQTYFL+ LS+ L +++F L
Sbjct: 113 LDHALALGADYLATGHYAQVRRDKNGRVEMLRGNDENKDQTYFLNQLSEDVLDKVMFPLG 172
Query: 57 LYPR---LTIPMEGIILEAETGD--------------FLEK------------------- 80
P+ I E ++ AE D FL +
Sbjct: 173 HLPKSEVRKIAKEHELVTAEKKDSTGICFIGERNFKEFLSEYLPAQPGEMQTLDGIVKGS 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL- 138
H G +YT+GQ Q LG+ +VV K++ +NI++V + Y + +L+ +
Sbjct: 233 HDGLMYYTLGQRQGLGIGGSGDPWFVVGKNLTDNILYVGQGY----ENDYLYSNALVATD 288
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGGE--------DIAVVQLSEDDQGLAAGQFAA 190
++ + P+KIS +NC+ + + E + V ED + + GQ
Sbjct: 289 INWIQPDKISDT----FNCTAKFRYRQQDSEVNVTIKSENEVYVAFKEDQRAITPGQAVV 344
Query: 191 FYQGRRCLGSGVI 203
FY G CLG G I
Sbjct: 345 FYDGEVCLGGGTI 357
>gi|390991299|ref|ZP_10261567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|418521411|ref|ZP_13087455.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|372553951|emb|CCF68542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas axonopodis pv. punicae str. LMG 859]
gi|410702586|gb|EKQ61089.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 378
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRDGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 169 LEKSTLRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ NN+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + S T++ +DG V+ + + GQ Y
Sbjct: 289 HWVTGAPPARRFSCTAQTRYRQPDESCTVDVQDDGS---VQVRFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G CLG VI
Sbjct: 346 DGEECLGGAVI 356
>gi|89255515|ref|YP_512876.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica LVS]
gi|156501449|ref|YP_001427514.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|290954256|ref|ZP_06558877.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica URFT1]
gi|422938038|ref|YP_007011185.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica FSC200]
gi|423049819|ref|YP_007008253.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica F92]
gi|122501358|sp|Q2A5X5.1|MNMA_FRATH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|166234852|sp|A7N9A5.1|MNMA_FRATF RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205821924|sp|Q0BP64.2|MNMA_FRATO RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|89143346|emb|CAJ78513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. holarctica LVS]
gi|156252052|gb|ABU60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. holarctica FTNF002-00]
gi|407293189|gb|AFT92095.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica FSC200]
gi|421950541|gb|AFX69790.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica F92]
Length = 359
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
>gi|212638582|ref|YP_002315102.1| tRNA-specific 2-thiouridylase MnmA [Anoxybacillus flavithermus WK1]
gi|212560062|gb|ACJ33117.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
[Anoxybacillus flavithermus WK1]
Length = 371
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 47/238 (19%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V + ++ + + KDQTYFL+ L QAQL +++F + + +
Sbjct: 123 DYLATGHYARVAYRDGEYQLLRGLDANKDQTYFLNQLGQAQLSKVLFPIGELQKSKVREI 182
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + ++ G+ H G +YTIG
Sbjct: 183 AKEAGLATAGKKDSTGICFIGERNFKQFLSNYLPAQPGEMQTLDGEVKGTHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP-EKIS 148
Q LG+ +VV K++++NI++V++ + + A ++ +S P E I+
Sbjct: 243 QRHGLGIGGSGEPWFVVGKNLKDNILYVAQGFDNELLYSDAIIATNVNWVSDRKPNEPIA 302
Query: 149 QLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
Y + +T+E + E A V S+ + + GQ FY G +CLG G I
Sbjct: 303 CTAKFRYRQPDVPVTVEMID---ETTARVSFSQRVRAVTPGQAVVFYNGEQCLGGGTI 357
>gi|120613352|ref|YP_973030.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax citrulli AAC00-1]
gi|166991120|sp|A1TWB8.1|MNMA_ACIAC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|120591816|gb|ABM35256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Acidovorax citrulli AAC00-1]
Length = 378
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 103/263 (39%), Gaps = 61/263 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
+D + + +A+GHYA V H+ A K KDQ+YFL L+Q+QL R +F +
Sbjct: 113 LDHAMRVGAEKIATGHYARVRHNPATGLHELLKGLDPAKDQSYFLHRLNQSQLSRTLFPV 172
Query: 56 ---------VLYPRLTIP----------------------------MEGIILEAETGDFL 78
+ + +P G IL+ + G L
Sbjct: 173 GELRKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYIQHAPGPILD-DRGRRL 231
Query: 79 EKHRGFWFYTIGQHQELGLLYIVYR------------YVVEKDIENNIVFVSRNYYSFDK 126
+H G FYT+GQ Q LG+ + + +V K++E N++ V + +
Sbjct: 232 GQHVGLSFYTLGQRQGLGIGGVKDKGAQRGGGEHAPWFVARKEVERNVLRVVQGHDHPWL 291
Query: 127 KRHLFHAGSLKLLSGLPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGL 183
H A ++G PP + Y + + T+ E G D A + E +
Sbjct: 292 LSHTLQATDANWVAGRPPAAGACAAKTRYRQQDAACTVTQAEGG--DFA-LSFPEAQWAV 348
Query: 184 AAGQFAAFYQGRRCLGSGVILEA 206
GQ A Y G CLG GVI A
Sbjct: 349 TPGQSAVLYDGEVCLGGGVITAA 371
>gi|335429501|ref|ZP_08556399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Haloplasma contractile SSD-17B]
gi|334889511|gb|EGM27796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Haloplasma contractile SSD-17B]
Length = 377
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 45/252 (17%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---- 53
+D S++ DY+A GHYA V H + + KDQTYFL L+Q QL R +F
Sbjct: 122 LDYAESLDCDYIAMGHYARVRHDKNQSYLLRGVDNNKDQTYFLCQLTQKQLERSLFPIGH 181
Query: 54 --------------------------------HLVLYPRLTIPMEGIILEAETGDFLEKH 81
+ + + +P + + G+ H
Sbjct: 182 LEKTEVREIADKLNLATAKKKDSTGVCFIGERNFTEFLQNYLPAKEGKMMTLDGEVKGTH 241
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YTIGQ + LG+ +V+ KD+E N++ V + ++ + + +S
Sbjct: 242 IGLMYYTIGQRKGLGIGGAGEPWFVIGKDLEQNVLLVGQGFHHENLYSDRCTVSDVNWIS 301
Query: 141 GLP--PEKISQLHSVFYNCSLTIE-HCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
P EK + + ++ +D E +V ED + + GQ A FY G C
Sbjct: 302 DEPLTGEKTCTAKFRYRQKDIPVKIKWKDKNE--LIVDFLEDVRAVTPGQAAVFYDGDTC 359
Query: 198 LGSGVILEAWDD 209
LG G I A+ D
Sbjct: 360 LGGGFIDAAFKD 371
>gi|171920850|ref|ZP_02932016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|185178984|ref|ZP_02964738.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|188024081|ref|ZP_02996823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|188518246|ref|ZP_03003776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 11 str. ATCC 33695]
gi|188524394|ref|ZP_03004420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 12 str. ATCC 33696]
gi|198273769|ref|ZP_03206303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209554475|ref|YP_002284838.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma urealyticum serovar
10 str. ATCC 33699]
gi|225550854|ref|ZP_03771803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 2 str. ATCC 27814]
gi|225551575|ref|ZP_03772521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|229487425|sp|B5ZBP8.1|MNMA_UREU1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|171903054|gb|EDT49343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|184209268|gb|EDU06311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|188019125|gb|EDU57165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|188998055|gb|EDU67152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 11 str. ATCC 33695]
gi|195660126|gb|EDX53506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 12 str. ATCC 33696]
gi|198249524|gb|EDY74306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209541976|gb|ACI60205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 10 str. ATCC 33699]
gi|225379390|gb|EEH01755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|225380008|gb|EEH02370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma urealyticum serovar 2 str. ATCC 27814]
Length = 380
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 104/252 (41%), Gaps = 54/252 (21%)
Query: 3 AISSMEFDYVASGHYANVVHS---SADHKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV 56
A + ++ DY+A GHYA V H+ S K KDQTYFL +L Q QL+ +F L
Sbjct: 126 AKNELKADYIAMGHYAKVKHTNNLSYLLKATDVNKDQTYFLCNLKQTQLQNALFPIGDLT 185
Query: 57 LYPRLTIPMEGIILEAETGD--------------FLEK--------------------HR 82
TI E ++ A D FLE H
Sbjct: 186 KQQVRTIAKEYGLVTANKKDSTGICFIGERNFKYFLENYIPNQPGEIVNIVNNQIVGHHM 245
Query: 83 GFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVS----RNYYSFDKKRHLFHAGSLK 137
G +YTIGQ + L L + R +V EKDI I++VS + Y + + + ++
Sbjct: 246 GTMYYTIGQRKGLNLGGMNERMFVCEKDINKKIIYVSPLSLEDQYLISNQALVENMNFIE 305
Query: 138 LLSGLPPEKISQLHS---VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
+ P + H V N L IE+ + V+ E + + GQ+A FYQ
Sbjct: 306 PYNPQIPISVRFRHRQNLVVVNSFLCIENTNN------VLINYEPAKAITPGQYAVFYQN 359
Query: 195 RRCLGSGVILEA 206
C+G GVI +
Sbjct: 360 DHCIGGGVIAQT 371
>gi|433655613|ref|YP_007299321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293802|gb|AGB19624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 372
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 103/244 (42%), Gaps = 58/244 (23%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---HLVLYPRLTI 63
DY+A+GHYA + +S+ ++ V KDQTYFL L Q QL + +F HL I
Sbjct: 123 DYIATGHYARIEYSNGKYRMLKGVDKNKDQTYFLCELDQKQLSKTMFPIGHLNKSEVREI 182
Query: 64 PME------------GIILEAE---------------------TGDFLEKHRGFWFYTIG 90
+ GI E +G L KH G FYT+G
Sbjct: 183 ARKAGLKTADKKDSTGICFIGERKFKEFLNQFLPAQPGEIRDLSGRVLGKHDGLMFYTLG 242
Query: 91 QHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
Q + LG+ I +VV+KD+ENNI++V++ +K L+ S L +
Sbjct: 243 QRRGLGIGGIGTGEPWFVVDKDVENNILYVAQG----EKNPALY---SYALFTKDVNWID 295
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAV--------VQLSEDDQGLAAGQFAAFYQGRRCLG 199
+ + + + C + +D+ V V + + + GQF FY G CLG
Sbjct: 296 NSIEADTFRCKAKFRY-RQPDQDVTVYAKDDGYFVVFDKPQRAVTPGQFVVFYDGEYCLG 354
Query: 200 SGVI 203
GVI
Sbjct: 355 GGVI 358
>gi|354582073|ref|ZP_09000975.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus lactis 154]
gi|353199472|gb|EHB64934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus lactis 154]
Length = 356
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 102/246 (41%), Gaps = 53/246 (21%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA V + + KDQTYFL+ L+Q QL + +F + P+ +
Sbjct: 110 DYVATGHYARVTEENGQFHLLRGVDGNKDQTYFLNALNQEQLSKAMFPIGHLPKPEVRRL 169
Query: 64 ----------------------------------PMEGIILEAETGDFLEKHRGFWFYTI 89
G +++ TG+ +H G +YT+
Sbjct: 170 AEEAGLYTAKKKDSTGVCFIGERNFKEFLSQYLPAQSGDMVDIVTGEVKGRHDGLMYYTL 229
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG---LP 143
GQ Q LG+ +V +KD+ NNI++V + + L +G + ++G +P
Sbjct: 230 GQRQGLGIGGSGSGEPWFVADKDLNNNILYVVQGDHPSLYSTGLIASG-VNWIAGADAMP 288
Query: 144 PEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+ Y + +T+ EDG +A ++ + + GQ FYQG CLG
Sbjct: 289 KAAFTCTAKFRYRQPDQEVTLTPREDGTVHVA---FAKPQKAITPGQAVVFYQGEECLGG 345
Query: 201 GVILEA 206
G I A
Sbjct: 346 GTIESA 351
>gi|336065213|ref|YP_004560072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pasteurianus ATCC 43144]
gi|334283413|dbj|BAK30986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pasteurianus ATCC 43144]
Length = 373
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 110/256 (42%), Gaps = 53/256 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GII--------------LEAETGDFLE-------K 80
+ P + E GI L A+ G + +
Sbjct: 173 HLEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y A S
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASS 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E ++ + F + +TI H + D A V +E + + GQ F
Sbjct: 293 IHFTRDMPEEFTMEVTAKFRYRQPDSKVTI-HVKG---DKAEVVFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAW 207
Y G+ CLG G+I A+
Sbjct: 349 YDGKECLGGGIIDMAY 364
>gi|406874992|gb|EKD24829.1| tRNA-specific 2-thiouridylase mnmA [uncultured bacterium (gcode 4)]
Length = 350
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 50/242 (20%)
Query: 7 MEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIFHLVLY- 58
+ FDY+A+GHYA + A K + KDQ+YFL+ L+Q QL + +F + Y
Sbjct: 112 LWFDYIATGHYARIETIKATKKTTYKLLRWVDYNKDQSYFLAGLNQFQLSKSLFPVWGYT 171
Query: 59 -PRL------------------------TIPMEGIILEA----------ETGDFLEKHRG 83
P + IP++ +L+ TG + KH
Sbjct: 172 KPEIRALAKKIWLPNAARKDSQWLCFIGNIPIKDFLLKKLPKKEGDIVDTTGKIVGKHEW 231
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS--RNYYSFDKKRHLFHAGSLKLLSG 141
+F+TIGQ Q L L + YV++ D++ N V V + FDK ++
Sbjct: 232 AYFFTIGQRQGLKLPFKA--YVIKTDVKKNRVIVGDREDKQLFDKTIATTGRHWIRKSYT 289
Query: 142 LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
LP + ++++ T++ + +DI VV E + +A GQ Y+ C+GSG
Sbjct: 290 LPTKILAKIRYRQEPQEATLKR--NKQKDI-VVTFKEKQRAIAPGQTIVAYKWDECIGSG 346
Query: 202 VI 203
+I
Sbjct: 347 II 348
>gi|138896133|ref|YP_001126586.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus thermodenitrificans
NG80-2]
gi|196250086|ref|ZP_03148780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. G11MC16]
gi|166234855|sp|A4IR87.1|MNMA_GEOTN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|134267646|gb|ABO67841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus thermodenitrificans NG80-2]
gi|196210270|gb|EDY05035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. G11MC16]
Length = 371
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 99/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V ++K KDQTYFL+ L QAQL +++F + +
Sbjct: 119 SIGADYVATGHYARVEFRDGEYKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHLQKAD 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + +++ G+ +H G +
Sbjct: 179 VRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPAQPGVMKTLDGEVKGRHDGVMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD+ N+++V++ + + A + +S PE
Sbjct: 239 YTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVSDRKPE 298
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ + F + + + DG A V + + GQ FY G CLG G
Sbjct: 299 APFRCTAKFRYRQPDIGVMVHPLADGK---AEVVFDAPARAVTPGQAVVFYNGDECLGGG 355
Query: 202 VILEAW 207
I E +
Sbjct: 356 TIDEVF 361
>gi|404477018|ref|YP_006708449.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira pilosicoli B2904]
gi|404438507|gb|AFR71701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira pilosicoli B2904]
Length = 353
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 40/165 (24%)
Query: 2 DAI--SSMEFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFH 54
DAI S + FD A+GHYA V + + + K +KDQ+YFL L+Q QL +++F
Sbjct: 115 DAIEKSGLTFDKFATGHYAGVRYDEEEKRYILLRGKNHIKDQSYFLYRLTQEQLSKIMFP 174
Query: 55 LVL-------------------------------YPRL-TIPMEGIILEAETGDFLEKHR 82
+ Y RL +EG I+ ET + L KH
Sbjct: 175 MYEMTKEETRSLAREYNLIDVAEKNDSQDFFAGEYHRLFDEDLEGNIVHIETNEILGKHN 234
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV-SRNYYSFDK 126
G W YT+GQ + LG+ Y +++ D N ++V ++N+ DK
Sbjct: 235 GIWHYTVGQRKGLGIAYKEPLFIISLDSSTNTIYVGNKNHTIIDK 279
>gi|365919917|ref|ZP_09444276.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cardiobacterium valvarum F0432]
gi|364578718|gb|EHM55913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cardiobacterium valvarum F0432]
Length = 371
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 103/247 (41%), Gaps = 63/247 (25%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF--------- 53
DY+A+GHYA +H P++ KDQ+YFLS ++ QL R IF
Sbjct: 125 DYLATGHYAR----RGEHTGAPALYKGIDGSKDQSYFLSQITPGQLARAIFPLGGLAKSE 180
Query: 54 --------HLVLYPR-------------------LTIPME-GIILEAETGDFLEKHRGFW 85
LV Y + +P + G I+ A+ G ++ +H G
Sbjct: 181 VRRIAEQAGLVTYDKKDSTGICFIGERPFRDFLSTYLPTQPGKIITAQ-GAWIGEHFGLM 239
Query: 86 FYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFH----AGSL 136
+YTIGQ Q LG+ + YV++K++ +N + V + + L+H A L
Sbjct: 240 YYTIGQRQGLGIGGVAGASEEPWYVLDKNLADNTLIVGQGEHPL-----LYHQALTARQL 294
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
L+ P E Y + + G+D V ++ + + GQ+ Y G R
Sbjct: 295 SWLNEAPQENHIYTAKTRYRQADQPCRIQWRGDDEIHVAFAQPQRAVTPGQYLVLYDGDR 354
Query: 197 CLGSGVI 203
CLG GVI
Sbjct: 355 CLGGGVI 361
>gi|27262188|gb|AAN87375.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
[Heliobacillus mobilis]
Length = 376
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 98/248 (39%), Gaps = 55/248 (22%)
Query: 10 DYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIP 64
D VA+GHYA + + + + K + KDQ+Y L +++Q QL R +F L + + I
Sbjct: 121 DKVATGHYARIEYDAERQRYRLGQAKDAKKDQSYVLFNMTQEQLSRTMFPLGGFTKPEIR 180
Query: 65 ----------------------------------------MEGIILEAETGDFLEKHRGF 84
G ++ +G+ + H+G
Sbjct: 181 EMARAYNLAVASKPDSQEICFIPDNDYRRFLQERYPENSFAPGPFVDT-SGNVIGTHQGL 239
Query: 85 WFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS---- 140
FYT+GQ + LG + YVV D+ N V + R+ F ++ AG L +
Sbjct: 240 PFYTVGQRKGLGQAFGYPAYVVGLDVARNAVIIGRDEDVFSRR---LLAGDLNWIEVNRL 296
Query: 141 GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
P E +++ I +G D +V+ E + + GQ FYQG +G
Sbjct: 297 TAPMEVQAKIRYSALKAKAIIRPVGEG--DQVIVEFEEKQRAITPGQAVVFYQGDWIVGG 354
Query: 201 GVILEAWD 208
G ILE D
Sbjct: 355 GTILENLD 362
>gi|385795403|ref|YP_005831809.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis NE061598]
gi|282159938|gb|ADA79329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis NE061598]
Length = 378
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 138 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 196
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 197 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 256
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 257 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 316
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 317 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 373
Query: 200 SGVIL 204
GVI+
Sbjct: 374 GGVII 378
>gi|120554680|ref|YP_959031.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter aquaeolei VT8]
gi|205816919|sp|A1U1H5.1|MNMA_MARAV RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|120324529|gb|ABM18844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter aquaeolei VT8]
Length = 392
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 118/287 (41%), Gaps = 72/287 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A+GHY D K + KDQ+YFL +S ++ R +F
Sbjct: 119 LDYAVTLGADYIATGHYTRQ-RPLNDGSGKAQLLKGLDPNKDQSYFLHAVSGERIARTLF 177
Query: 54 ------------------------------------HLVLYPRLTIPMEGIILEAETGDF 77
+ + +P + +E G
Sbjct: 178 PVGELEKPEVRRIAEEQGFVTHDKKDSTGICFIGERKFTDFLKQYLPAQPGNIETPDGTV 237
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVY-----RYVVEKDIENNIVF-VSRNYYSFDKKRHLF 131
+ KH+G ++TIGQ Q LG+ + YV EKD++ N++ V ++ R L
Sbjct: 238 IGKHQGLMYHTIGQRQGLGIGGLAEFGDEPWYVAEKDLKRNVLIAVQGKHHPLLFSRGLV 297
Query: 132 HAGSLKLLSGLPPEKI------SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAA 185
+G + ++G PP + ++ +C +T+ DGG + VV + + +
Sbjct: 298 -SGPVDWVAGEPPAQKFRCKAKTRYRQPDQDCEVTVI---DGG--VKVV-FDDAQRAVTP 350
Query: 186 GQFAAFYQGRRCLGSGVILEAW-DDQGFPVCKKALEIARMEDKSKLG 231
GQ FYQG CLG GVI + W D++ P AR+E ++ G
Sbjct: 351 GQSVVFYQGEVCLGGGVIEQTWRDNEALP--------ARLEHQASEG 389
>gi|403379215|ref|ZP_10921272.1| tRNA-specific 2-thiouridylase MnmA [Paenibacillus sp. JC66]
Length = 377
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 44/237 (18%)
Query: 10 DYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V ++ S KDQTYFL+ L+Q+QL + +F + P+ +
Sbjct: 123 DYIATGHYAQVAERDGSYRLLRGVDSNKDQTYFLNALNQSQLSKTMFPIGHLPKPEVRAI 182
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + + G+ +H G +YT+G
Sbjct: 183 AEKAGLPTARKKDSTGVCFIGERDFKEFLSHYLPAQPGEMRTLDGELKGRHDGLMYYTLG 242
Query: 91 QHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
Q Q LG+ +V KD+ NNI++V + + L G + +SG P +
Sbjct: 243 QRQGLGIGGSGTGEPWFVAGKDLRNNILYVVQGDHPSLYSTSLMATG-VNWISGQSPGRT 301
Query: 148 SQLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ F Y + D V + + + + GQ FYQG C+G G I
Sbjct: 302 LHCTAKFRYRQPDQEVTVTELAADKVRVDFAREQRAITPGQAVVFYQGEECIGGGTI 358
>gi|21674668|ref|NP_662733.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium tepidum TLS]
gi|81790728|sp|Q8KBD3.1|MNMA_CHLTE RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|21647873|gb|AAM73075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlorobium tepidum TLS]
Length = 366
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 96/246 (39%), Gaps = 46/246 (18%)
Query: 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLY 58
+A+ + D VA+GHYA A + V KDQ+YFL L+QA+L + +F L Y
Sbjct: 109 EAMRLLRADLVATGHYARTELRDAVTRLLKGVDPEKDQSYFLWMLTQAELAKTLFPLGGY 168
Query: 59 -----------------------------------------PRLTIPMEGIILEAETGDF 77
P L + G + + G
Sbjct: 169 TKAEVRELARSFGVHAAEKKESQEICFVPHDDYCAYLANAIPGLEARVAGGEIVDQAGKV 228
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK 137
+ HRG+ FYTIGQ + LG+ YV E D E+N + V + + R L +G
Sbjct: 229 IGHHRGYPFYTIGQRRGLGVSTGEPVYVTEIDAEHNRIHVGSK--ADLECRSLIASGMNW 286
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
+ P + + Y + E ++ A V E QG+A GQ FY G
Sbjct: 287 IGIATPDKSFEAEARIRYRDRQSACMIEPMDDNRAWVSFREPKQGVACGQAVVFYDGDEV 346
Query: 198 LGSGVI 203
LG G+I
Sbjct: 347 LGGGII 352
>gi|270291444|ref|ZP_06197666.1| tRNA methyl transferase [Pediococcus acidilactici 7_4]
gi|304385157|ref|ZP_07367503.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus acidilactici DSM 20284]
gi|418069440|ref|ZP_12706718.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
PP-loop ATPase [Pediococcus acidilactici MA18/5M]
gi|270280290|gb|EFA26126.1| tRNA methyl transferase [Pediococcus acidilactici 7_4]
gi|304329351|gb|EFL96571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus acidilactici DSM 20284]
gi|357536909|gb|EHJ20937.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
PP-loop ATPase [Pediococcus acidilactici MA18/5M]
Length = 377
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 107/261 (40%), Gaps = 60/261 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D S+ DYVA+GHYA V H + S KDQTYFLS LS QL R++F L
Sbjct: 113 LDYAISLGADYVATGHYAQVERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLG 172
Query: 56 -VLYPRL-TIPME------------GIILEAET---------------------GDFLEK 80
++ P + I E GI E G+ +
Sbjct: 173 GMVKPEVRAIAKEAGLAVYDKKDSVGICFIGEKNFREFLSNYLPAKPGKMMTLDGEVKGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF----H 132
H G +YTIGQ + LG+ +VV KD+ NI++V + FD HL+
Sbjct: 233 HAGLMYYTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVGQ---GFDNP-HLYAASLD 288
Query: 133 AGSLKLLSGLPPEK------ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A + ++ L E+ ++ + +T+ +D + V E + + G
Sbjct: 289 ASDMHFVNRLGEERGHDFRCTAKFRYRAKDVPVTVHFSDDFSK--VTVDFDEPARAITPG 346
Query: 187 QFAAFYQGRRCLGSGVILEAW 207
Q Y G C+G G+I A+
Sbjct: 347 QALVLYDGEECIGGGIIDAAY 367
>gi|423561136|ref|ZP_17537412.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-A1]
gi|401201393|gb|EJR08258.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-A1]
Length = 371
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 103/246 (41%), Gaps = 55/246 (22%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ L+ + + G K+ +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHN----ELLYGDEVIAMNVGWVSNKVKE 298
Query: 150 LHSVFYNCSLTIEHCEDGG--------EDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ C+ + ++ E+ + E + + GQ FY G CLG
Sbjct: 299 TE---FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDGDECLGGA 355
Query: 202 VILEAW 207
I E +
Sbjct: 356 TIDEVY 361
>gi|418517468|ref|ZP_13083631.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410705846|gb|EKQ64313.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 378
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRDGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 169 LEKSTLRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ NN+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + S T++ +DG V+ + + GQ Y
Sbjct: 289 HWVTGAPPARRFSCTAQTRYRQPDESCTVDVQDDGS---VQVRFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G CLG VI
Sbjct: 346 DGEDCLGGAVI 356
>gi|326911266|ref|XP_003201982.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Meleagris gallopavo]
Length = 346
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 109/285 (38%), Gaps = 89/285 (31%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKPS---------------------VKDQ 36
A+ ++ D +A+GHYA + H +P KDQ
Sbjct: 37 AMDNLGADAIATGHYARTSLEDEEVFQQKHMKRPRELFRNRFEVRNTVKLLQGADLFKDQ 96
Query: 37 TYFLSHLSQAQLRRLIFHL-----------------------------VLYPRLTI---- 63
T+FLS +SQ LR+ IF L L+ + I
Sbjct: 97 TFFLSQISQDALRKTIFPLGDLTKSFVRKIASEHGLHHVLKKKEACSTFLFQSMGICFIG 156
Query: 64 -------------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDI 110
P G + E + H+G++ YTIGQ L + +VV+KD+
Sbjct: 157 ERNFEKFLLEYLEPQPGNFVSIEDKKVMGTHKGWFLYTIGQRARLAGQQDAW-FVVDKDV 215
Query: 111 ENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSL 159
+FV+ + R L + ++ PP +K+ + H F + C L
Sbjct: 216 STGDIFVAPSTDHPALYRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVL 275
Query: 160 TIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
T+ +DG + +V+ + + L GQFA FY+G CLGSG IL
Sbjct: 276 TLN--QDGSVWVTLVKPA---RALTPGQFAVFYKGDECLGSGKIL 315
>gi|312109803|ref|YP_003988119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y4.1MC1]
gi|423718843|ref|ZP_17693025.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus thermoglucosidans TNO-09.020]
gi|311214904|gb|ADP73508.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. Y4.1MC1]
gi|383367746|gb|EID45021.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus thermoglucosidans TNO-09.020]
Length = 370
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 61/257 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+D S++ DY+A+GHYA + + + K KDQTYFLS L++ L +++F L
Sbjct: 110 VDYALSLDADYIATGHYARIRRENGQVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGE 169
Query: 56 ----------------------------------VLYPRLTIPMEGIILEAETGDFLEKH 81
+ + +P + + + G+ L H
Sbjct: 170 LTKDEVRKIAKELNLVTANKKDSTGICFIGERNFKRFLKNFLPAQPGEIRSLDGEVLGTH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRH--LFHAG-- 134
G +YTIGQ + LG+ YVV+KD+ENN++ V++ K H LF G
Sbjct: 230 DGLMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQG------KNHPALFSTGLI 283
Query: 135 --SLKLLSG-LPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
++ ++G + P + Y + +T+ H G A+V+ + + + GQ
Sbjct: 284 ASNISFINGDVRPRTFACTAKFRYRQEDQKVTV-HVRPNG--TALVEFEKPVKAVTPGQV 340
Query: 189 AAFYQGRRCLGSGVILE 205
A FY CLGS VI E
Sbjct: 341 AVFYDNDVCLGSAVIDE 357
>gi|115314034|ref|YP_762757.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
holarctica OSU18]
gi|254366943|ref|ZP_04982980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. holarctica 257]
gi|115128933|gb|ABI82120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. holarctica OSU18]
gi|134252770|gb|EBA51864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. holarctica 257]
Length = 381
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 141 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 199
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 200 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 259
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 260 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 319
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 320 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 376
Query: 200 SGVIL 204
GVI+
Sbjct: 377 GGVII 381
>gi|227499265|ref|ZP_03929377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus tetradius ATCC 35098]
gi|227218674|gb|EEI83905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus tetradius ATCC 35098]
Length = 367
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 111/255 (43%), Gaps = 52/255 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D S+ D+VA+GHYA V S+ + + S KDQTYFLS LSQ Q++ ++F +
Sbjct: 113 LDFAKSLGADFVATGHYARVDRSADETVMLRGVDSNKDQTYFLSQLSQEQIKDVLFPVGE 172
Query: 58 YPRLTI-------------------------------------PMEGIILEAETGDFLEK 80
+ + EG I++ E G+ L +
Sbjct: 173 LEKSQVREIAHKYKLATADKKDSTGICFIGERDFNEFLSNYLPAQEGNIVDTE-GNILGR 231
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSR---NYYSFDKKRHLFHAGSL 136
H G F+TIGQ + LG+ +V KD++ N + V + N F K +A
Sbjct: 232 HEGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKKNELIVCQGKNNPLLFSNK---LYASEF 288
Query: 137 KLLSGLP-PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSED-DQGLAAGQFAAFYQG 194
+S PE+ S Y + H + G+ ++++ D + + GQ A FY G
Sbjct: 289 STISDKEIPEEFSCTAKFRYRQADINAHVKVLGD--GKIEVTYDRTKAVTPGQAAVFYLG 346
Query: 195 RRCLGSGVILEAWDD 209
CLGS +I E ++D
Sbjct: 347 DVCLGSAIIDEVYND 361
>gi|56708687|ref|YP_170583.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110671159|ref|YP_667716.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
tularensis FSC198]
gi|254875562|ref|ZP_05248272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis MA00-2987]
gi|56605179|emb|CAG46310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis SCHU S4]
gi|110321492|emb|CAL09693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis FSC198]
gi|254841561|gb|EET19997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. tularensis MA00-2987]
Length = 381
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 141 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 199
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 200 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 259
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 260 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 319
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 320 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 376
Query: 200 SGVIL 204
GVI+
Sbjct: 377 GGVII 381
>gi|295706703|ref|YP_003599778.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus megaterium DSM 319]
gi|294804362|gb|ADF41428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus megaterium DSM 319]
Length = 370
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 57/243 (23%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V + ++K V KDQTYFL+ L Q QL +++F + + +
Sbjct: 123 DYLATGHYARVAYRDGEYKMLRGVDGNKDQTYFLNQLGQDQLSKVMFPIGEIEKSKVREI 182
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + +++ G+ KH G +YTIG
Sbjct: 183 AKEAGLATATKKDSTGICFIGERNFKEFLSQYLPAQPGVMQTLDGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS--------- 140
Q LG+ +VV KD+E N+++V + +++ L ++ SL +
Sbjct: 243 QRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHN-----ELLYSTSLTATNVSWVSERDW 297
Query: 141 GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
P ++ + ++T+E +D D V +E + + GQ FY+ C+G
Sbjct: 298 SSPMTCTAKFRYRQTDSAVTVEKVDD---DTIKVIFAEPVRAITPGQAVVFYKDDECVGG 354
Query: 201 GVI 203
I
Sbjct: 355 ATI 357
>gi|392949171|ref|ZP_10314762.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus pentosus KCA1]
gi|392435586|gb|EIW13519.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus pentosus KCA1]
Length = 374
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 104/258 (40%), Gaps = 50/258 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D + DY+A+GHYA + H + S KDQTYFLS L L++++F
Sbjct: 113 LDYAMDLGADYIATGHYARLRHDEDGTMHLLRGVDSNKDQTYFLSQLDSKTLQKVMFPLG 172
Query: 54 --------HLVLYPRLTIPME------------------GIILEAETGDFLE-------K 80
L L L + G L A G + +
Sbjct: 173 EMIKPDVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLPATPGKMMTFDGQVKGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ +V+ KD+E NI++V + Y++ A L
Sbjct: 233 HAGLMYYTIGQRRGLGIGGDGEDNEPWFVIGKDLEKNILYVGKGYHNPHLYATHLKASDL 292
Query: 137 KLLS----GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ G ++ + +T+ +D E V E + + GQ FY
Sbjct: 293 HFVTDEDLGNDFHVTAKFRYRQKDSGVTVHFNDDHTE--VTVTFDEPVRAITPGQAVVFY 350
Query: 193 QGRRCLGSGVILEAWDDQ 210
G CLGSG+I A++D+
Sbjct: 351 NGEECLGSGMIDAAYNDE 368
>gi|390347698|ref|XP_003726848.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Strongylocentrotus purpuratus]
Length = 396
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 108/268 (40%), Gaps = 75/268 (27%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSV-------------KDQTYFLSHLSQAQLR 49
A++ + D +A+GHYA DK S KDQT+FLS ++Q L
Sbjct: 114 AMTKFDADGLATGHYAQRSIGEQFLYDKDSASKGVKLLKAADSWKDQTFFLSQITQNALG 173
Query: 50 RLIF---HLVL-------------------------------YPRLTI----PMEGIILE 71
+ +F HL +P P +G +
Sbjct: 174 KTLFPVGHLTKDVVKRIAHEVGLKRAAQRKESMGICFIGRRHFPTFIKEYLEPKQGSFIS 233
Query: 72 AETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
E + +H+G + +T+GQ +G + + +VV+KD ENN VFV+ + LF
Sbjct: 234 VEDNKTVGEHQGHFLFTLGQGANIGGMKERW-FVVDKDAENNTVFVAPTTH----HPALF 288
Query: 132 HAGSLKLLSG------LPPEKISQLHSVFYNCSLTIEH------CEDGGEDIA--VVQLS 177
H L++G PP ++ L +C +H C + +V LS
Sbjct: 289 HE---TLMTGPVHWIHQPPRQL--LEDQMMDCYFRFQHVHGLTKCTLTSSSMGSVIVSLS 343
Query: 178 EDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ + L GQ+A FY G CLGS VI++
Sbjct: 344 KPMRALTPGQYAVFYLGDECLGSAVIMK 371
>gi|375309840|ref|ZP_09775120.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus sp. Aloe-11]
gi|375078204|gb|EHS56432.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus sp. Aloe-11]
Length = 373
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 98/247 (39%), Gaps = 60/247 (24%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA VV + S KDQTYFL+ LSQ QL R +F + P+ +
Sbjct: 123 DYVATGHYARVVEEDGRFTLLRGVDSNKDQTYFLNALSQKQLSRAMFPIGHLPKPEVRKI 182
Query: 64 ---------------------------------PMEG-IILEAETGDFLEKHRGFWFYTI 89
P +G +++ TG+ +H G +YT+
Sbjct: 183 AESAGLYTAKKKDSTGVCFIGERNFKEFLSGYLPAKGGDMVDIATGEVKGRHDGLMYYTL 242
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAG----SLKLLSGL 142
GQ Q LG+ +V +KD+E NI++V + D+ L+ G + + G
Sbjct: 243 GQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQG----DRHHSLYSTGLIATDVNWIEGA 298
Query: 143 PPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+ + +T+ E+G V + + GQ FY G R
Sbjct: 299 DARPSGEFRCTAKFRYRQPDQQVTLRWLENG---TVHVVFDVHQKAITPGQAVVFYDGER 355
Query: 197 CLGSGVI 203
CLG G I
Sbjct: 356 CLGGGTI 362
>gi|228993134|ref|ZP_04153056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus pseudomycoides DSM 12442]
gi|228999183|ref|ZP_04158765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides Rock3-17]
gi|229006731|ref|ZP_04164365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides Rock1-4]
gi|228754592|gb|EEM04003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides Rock1-4]
gi|228760800|gb|EEM09764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides Rock3-17]
gi|228766593|gb|EEM15234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus pseudomycoides DSM 12442]
Length = 376
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYIDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 AKEAGLATATKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIGWVSNRAKEKEFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ +D + + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQEDNKVTVQIVDD---NTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|73542506|ref|YP_297026.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia eutropha JMP134]
gi|123624143|sp|Q46XF1.1|MNMA_CUPPJ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|72119919|gb|AAZ62182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia eutropha JMP134]
Length = 362
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 97/252 (38%), Gaps = 46/252 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D S+ + +A+GHYA V ++A K KDQ+YFL L+QAQL R +F L
Sbjct: 110 LDHAMSLGAETIATGHYARVRQNAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLG 169
Query: 57 LYPRLTI------------------------------------PMEGIILEAETGDFLEK 80
P+ + P + ++ G + +
Sbjct: 170 EIPKTRVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPMKTPDGKVVGE 229
Query: 81 HRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G FYT+GQ + +GL YV KD+ +N ++V + + A
Sbjct: 230 HIGLAFYTLGQRKGIGLGGSREGSGDAWYVARKDMASNTLYVVQGHDHPWLLTPTLVAAD 289
Query: 136 LKLLSGLPP-EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
L ++G PP S Y S + D+ + +E + GQ A Y G
Sbjct: 290 LSWVAGEPPLAGASMAAKTRYRQSDAPCVVDAADGDMLKLAFAEAQWAVTPGQSAVLYDG 349
Query: 195 RRCLGSGVILEA 206
CLG G+I A
Sbjct: 350 DVCLGGGIIQSA 361
>gi|407712145|ref|YP_006832710.1| tRNA-specific 2-thiouridylase [Burkholderia phenoliruptrix BR3459a]
gi|407234329|gb|AFT84528.1| tRNA-specific 2-thiouridylase [Burkholderia phenoliruptrix BR3459a]
Length = 381
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 104/261 (39%), Gaps = 63/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSA--------DHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D S+ + +A+GHYA V ++ DH KDQ+YFL L+QAQL + +
Sbjct: 110 LDHAMSLGAETIATGHYARVRENNGRFELLKAFDH-----TKDQSYFLHRLNQAQLSKTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTKVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLPTQPGPMKTTDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT GQ + +GL +V KDI +N ++V++ + H
Sbjct: 225 VVGEHIGLAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHTL 284
Query: 132 HAGSLKLLSGLPP-EKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQ--GLAA 185
AG+ ++G PP E + Y + T GG+ + QL+ DD +
Sbjct: 285 TAGNTSWVAGEPPAEGFACGAKTRYRQADARCTFGAAGAGGD---LFQLTFDDAQWAVTP 341
Query: 186 GQFAAFYQGRRCLGSGVILEA 206
GQ A Y G CLG G+I A
Sbjct: 342 GQSAVLYDGDVCLGGGIIEHA 362
>gi|288941240|ref|YP_003443480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Allochromatium vinosum DSM 180]
gi|288896612|gb|ADC62448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Allochromatium vinosum DSM 180]
Length = 371
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 100/261 (38%), Gaps = 70/261 (26%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D + + +A+GHYA VV + H+ + KDQTYFL L Q QL R +F L
Sbjct: 117 LDHALGLGAEAIATGHYARVVADAQGGYHLHRAVDADKDQTYFLHLLDQEQLSRALFPLA 176
Query: 57 ---------LYPRLTI---------------------------PMEGIILEAETGDFLEK 80
L RL + P E +E G L +
Sbjct: 177 DLTKGEVRALARRLGLANAAKKDSTGICFIGERRFSDFLARYLPREPGPIETPEGVRLGE 236
Query: 81 HRGFWFYTIGQHQELGLLYI-----VYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YT+GQ Q LG+ + YV KD NN + V + D + L +
Sbjct: 237 HHGLAYYTLGQRQGLGIGGVSQGREAPWYVAVKDSANNRLIVVQ-----DSRHPLLMSTG 291
Query: 136 LKLL-----SGLPPEKISQLHSVFYNCSLTIEH------CE--DGGEDIAVVQLSEDDQG 182
L+ L SG PE + C + H CE + G D V+ E +
Sbjct: 292 LEALQPHWISGRAPETP-------FRCLARLRHRQPLQACELVEIGADGCRVRFDEPQRA 344
Query: 183 LAAGQFAAFYQGRRCLGSGVI 203
+ GQ FYQ CLG VI
Sbjct: 345 VTPGQSVVFYQETECLGGAVI 365
>gi|206889455|ref|YP_002249424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206889622|ref|YP_002249374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741393|gb|ACI20450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741560|gb|ACI20617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 342
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 96/240 (40%), Gaps = 42/240 (17%)
Query: 10 DYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR------ 60
+Y+A+GHYA +V + K KDQ+YFL + + L +IF L Y +
Sbjct: 108 NYIATGHYARIVRINNIPLLMKGIDPKKDQSYFLYGIERTLLSHIIFPLGEYTKYKIREI 167
Query: 61 ---LTIPME-------------------------GIILEAETGDFLEKHRGFWFYTIGQH 92
+ IP + G I+E TG + +HRG YTIGQ
Sbjct: 168 AEKVGIPSKVAEESTEVCFLRDKRYYESIRPTKGGPIIEMSTGKIIGQHRGIHLYTIGQR 227
Query: 93 QELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHS 152
+ LG+ YVV+ + N V+V +F ++ F L L + E+ S
Sbjct: 228 KRLGIASPHPLYVVKIEPSENAVYVDSKEKAFMRE---FVVNELNWLCDIEKEEFSCQVK 284
Query: 153 VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQGF 212
+ Y + +D A V + GQ A FY G LG GVI E QGF
Sbjct: 285 IRYAMNPEKATVTLINKDRANVVFEKPQFAPTPGQSAVFYNGDIVLGGGVIKEIM--QGF 342
>gi|388565871|ref|ZP_10152351.1| tRNA-specific 2-thiouridylase MnmA [Hydrogenophaga sp. PBC]
gi|388266856|gb|EIK92366.1| tRNA-specific 2-thiouridylase MnmA [Hydrogenophaga sp. PBC]
Length = 383
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 98/255 (38%), Gaps = 51/255 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D + + +A+GHYA V + H K +KDQ+YFL L+QAQL + +F +
Sbjct: 111 LDHAMRLGAEKIATGHYARVRERAGRHELLKGLDPLKDQSYFLHRLTQAQLAKTMFPVGE 170
Query: 58 YPRLTI--------------------------PMEGII----------LEAETGDFLEKH 81
P+ + P + ++ E G + +H
Sbjct: 171 LPKTEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYIASAPGPIKDERGRTIGEH 230
Query: 82 RGFWFYTIGQHQELGLLYIVYR------------YVVEKDIENNIVFVSRNYYSFDKKRH 129
G FYT+GQ Q LG+ + + +V KDI N ++ + +
Sbjct: 231 VGLSFYTLGQRQGLGIGGVRAKGAQKGGSEHEPWFVARKDIARNTLWAVQGHDHPWLLSP 290
Query: 130 LFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
A ++G PP + Y + E G+D V++ + + GQ A
Sbjct: 291 RLRAHDASWVAGEPPRAGALAAKTRYRQADAPCAIEPLGDDGFVLRFEQAQWAVTPGQSA 350
Query: 190 AFYQGRRCLGSGVIL 204
Y G CLG GVI+
Sbjct: 351 VLYDGEVCLGGGVIV 365
>gi|390454901|ref|ZP_10240429.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus peoriae KCTC 3763]
Length = 375
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 102/247 (41%), Gaps = 60/247 (24%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DYVA+GHYA VV + S KDQTYFL+ LSQ QL R +F + P+ +
Sbjct: 125 DYVATGHYARVVEEDGRFTLLRGVDSNKDQTYFLNALSQKQLSRAMFPIGHLPKPEVRKI 184
Query: 64 ---------------------------------PMEG-IILEAETGDFLEKHRGFWFYTI 89
P +G +++ TG+ +H G +YT+
Sbjct: 185 AESAGLYTAKKKDSTGVCFIGERNFKEFLSGYLPAKGGDMVDIATGEVKGRHDGLMYYTL 244
Query: 90 GQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAG----SLKLLSG- 141
GQ Q LG+ +V +KD+E NI++V + D+ L+ G + + G
Sbjct: 245 GQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQG----DRHHSLYSTGLIATDVNWIEGA 300
Query: 142 -LPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+ P + + F + +T+ E+G V + + GQ FY G R
Sbjct: 301 DVRPSGEFRCTAKFRYRQPDQQVTLRWLENG---TVHVVFDVHQKAITPGQAVVFYDGER 357
Query: 197 CLGSGVI 203
CLG G I
Sbjct: 358 CLGGGTI 364
>gi|152976810|ref|YP_001376327.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cytotoxicus NVH
391-98]
gi|189036217|sp|A7GT74.1|MNMA_BACCN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|152025562|gb|ABS23332.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cytotoxicus NVH 391-98]
Length = 371
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 103/246 (41%), Gaps = 55/246 (22%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ L Q QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLGQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 AKEAGLATATKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ +VV K+++ NI++V + +++ A ++ +S EK
Sbjct: 243 QRHGLGIGGNGDPWFVVGKNLKENILYVDQGFHNELLYGDEVIATNVNWVSDRAKEKE-- 300
Query: 150 LHSVFYNCSLTIEH-CEDGGEDIAVVQ-------LSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ C+ + ED G + +V E + + GQ FY G CLG
Sbjct: 301 -----FKCTAKFRYRQEDNGVTVQIVDENTIRILCDEPIRAITPGQAVVFYDGDECLGGA 355
Query: 202 VILEAW 207
I E +
Sbjct: 356 TIDEVY 361
>gi|306834574|ref|ZP_07467687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus bovis ATCC 700338]
gi|304423376|gb|EFM26529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus bovis ATCC 700338]
Length = 373
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 112/261 (42%), Gaps = 63/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D ++ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL+++
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDEDGIVHMLRGADNN-----KDQTYFLSQLSQEQLQKV 167
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F L + P + E GI L A+ G +
Sbjct: 168 MFPLGHLEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDG 227
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+H G +YTIGQ LG+ +VV KD+ NI++V + +Y
Sbjct: 228 RDMGEHAGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTS 287
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A S+ +P E ++ + F + +TI H + D A V +E + + G
Sbjct: 288 LDASSIHFTRDMPEEFTMEVTAKFRYRQPDSKVTI-HVKG---DKAEVVFAEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAW 207
Q FY G+ CLG G+I A+
Sbjct: 344 QAVVFYDGKECLGGGIIDMAY 364
>gi|229032046|ref|ZP_04188029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1271]
gi|228729291|gb|EEL80285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1271]
Length = 376
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIGWVSNEAKEKEFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|320547685|ref|ZP_08041970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus equinus ATCC 9812]
gi|320447760|gb|EFW88518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus equinus ATCC 9812]
Length = 373
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 112/263 (42%), Gaps = 63/263 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D ++ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL+++
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDEDGTVHMLRGADNN-----KDQTYFLSQLSQEQLQKV 167
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F L + P + E GI L A+ G +
Sbjct: 168 MFPLGHLEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTVDG 227
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+H G +YTIGQ LG+ +VV KD+ NI++V + +Y
Sbjct: 228 RDMGEHAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTS 287
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A S+ +P E ++ + F + +T+ H + D A V +E + + G
Sbjct: 288 LDASSVHFTRDMPEEFTMEVTAKFRYRQPDSKVTV-HVKG---DKAEVVFAEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDD 209
Q FY G CLG G+I A+ D
Sbjct: 344 QAVVFYDGEECLGGGIIDMAYKD 366
>gi|325983111|ref|YP_004295513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosomonas sp. AL212]
gi|325532630|gb|ADZ27351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Nitrosomonas sp. AL212]
Length = 359
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 103/258 (39%), Gaps = 61/258 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV- 56
+D + + DY+A+GHYA V + K + KDQ+YFL L+QAQL + +F +
Sbjct: 110 LDHANKLGADYIATGHYARVRKAGGVFQLLKGEDGNKDQSYFLYRLNQAQLAKSLFPIGH 169
Query: 57 LYPRLT-----------------------------------IPMEGIILEAETGDFLEKH 81
LY R +P E ++ G + +H
Sbjct: 170 LYKREVRKIARELKLPNSSKKDSTGICFIGERPFREFLNRYLPHEPGEIQTTDGKVIGEH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +YTIGQ Q LG+ I +V KD+ N++ V + + D R A L
Sbjct: 230 IGLMYYTIGQRQGLGIGGIRNGGDEPWFVAAKDMNRNVLIVVQGHNHPDLFRPSLKAIDL 289
Query: 137 KLLSGLPP---------EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
+ P + Q + +L+ E CE V+ +++ + GQ
Sbjct: 290 SWIDDKQPHCNWVYAAKTRYRQTDAPCTITNLSHESCE--------VEFAQNQWAITPGQ 341
Query: 188 FAAFYQGRRCLGSGVILE 205
Y+ + CLG GVIL+
Sbjct: 342 SVVIYESQVCLGGGVILQ 359
>gi|194246580|ref|YP_002004219.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Phytoplasma mali]
gi|193806937|emb|CAP18369.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase
[Candidatus Phytoplasma mali]
Length = 385
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 115/255 (45%), Gaps = 51/255 (20%)
Query: 4 ISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL--VL 57
+ + + D++A+GHYAN+ + + K + KDQ+YFLS L Q QL+++IF L +
Sbjct: 122 VDTFKPDFIATGHYANIDYDKNNKLILKKAFDTNKDQSYFLSQLKQHQLKKIIFPLGNLT 181
Query: 58 YPRLT----------------------------------IPMEGIILEAETGDFLEKHRG 83
P + +PM+ ++ G +L++HRG
Sbjct: 182 KPEVREIAKKAGLINANKKDSTGICFIGERRFFDFLKNYLPMKPGKMKKLDGTYLKEHRG 241
Query: 84 FWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFV---SRNYYSFDKKRHLFHAGSL 136
+YTIGQ + LGL + +VV K+++ NI++V S ++Y + +
Sbjct: 242 TIYYTIGQRKGLGLGGCQFNQSPWFVVGKNLKKNILYVEQGSEHFYLYSDSALIVDVVWR 301
Query: 137 KLLSGLPPE-KISQ--LHSVFYNCSLTIEHCEDGGEDIAV-VQLSEDDQGLAAGQFAAFY 192
+ + + KIS+ L++ F L + + V V + + + GQ AFY
Sbjct: 302 GTIYDIQEQIKISKKNLNAKFRYRQLDQKISITWLNNTTVKVYYPQKIKAVTPGQICAFY 361
Query: 193 QGRRCLGSGVILEAW 207
CLGSG+I E +
Sbjct: 362 LEDICLGSGMIKEVY 376
>gi|160915329|ref|ZP_02077542.1| hypothetical protein EUBDOL_01338 [Eubacterium dolichum DSM 3991]
gi|158433128|gb|EDP11417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eubacterium dolichum DSM 3991]
Length = 387
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 112/261 (42%), Gaps = 61/261 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIF---H 54
++ + M FD VA GHYA V H + + + KDQTYFL+ + Q L+ +F H
Sbjct: 120 LNYANKMGFDMVAMGHYAQVEHGPKESRLIRGADTNKDQTYFLAQVPQQSLQHALFPIGH 179
Query: 55 LVLYPRLTIPME-----------------------------------GIILEAETGDFLE 79
L + I E G I++ E+ + +
Sbjct: 180 LEKHEVRQIAKELHLDSVSAKKDSTGICFIGERNFKAFLSNYLPSKDGDIVDIESLEVIG 239
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
+H G +YTIGQ + LG+ +VV KD+E N+++V+ ++ LF +
Sbjct: 240 RHAGVLYYTIGQRKGLGIGGNKGPWFVVGKDVEKNVLYVTNG----NESDWLFTNSC--I 293
Query: 139 LSGL-------PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
+SG+ P E + Y + ++ + +D + V+ S+ + +GQ
Sbjct: 294 VSGVNWFSNERPSEDYACTAKFRYRQADNAVVLRFIDD---NTVFVRYSQKVAAVTSGQE 350
Query: 189 AAFYQGRRCLGSGVILEAWDD 209
A FYQ CLG GVI +A+ D
Sbjct: 351 AVFYQNETCLGGGVIEDAFID 371
>gi|423400760|ref|ZP_17377933.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-2]
gi|423457356|ref|ZP_17434153.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5X2-1]
gi|423478538|ref|ZP_17455253.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6X1-1]
gi|401147740|gb|EJQ55233.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5X2-1]
gi|401653750|gb|EJS71293.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-2]
gi|402427769|gb|EJV59872.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6X1-1]
Length = 371
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIGWVSNEAKEKEFK 302
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|392429567|ref|YP_006470581.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus intermedius JTH08]
gi|419776853|ref|ZP_14302772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus intermedius SK54]
gi|383845538|gb|EID82941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus intermedius SK54]
gi|391758716|dbj|BAM24333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus intermedius JTH08]
Length = 373
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDEDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R F Q
Sbjct: 173 HLEKPEVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTFEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQNGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D A+V +E + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAIVNFAELQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGEECLGGGLIDNAY 364
>gi|424865880|ref|ZP_18289736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [SAR86
cluster bacterium SAR86B]
gi|400758453|gb|EJP72660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [SAR86
cluster bacterium SAR86B]
Length = 358
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 103/251 (41%), Gaps = 68/251 (27%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
D++A+GHYA +++ DH + KDQTYFL +++ QL+ IF L
Sbjct: 120 DFIATGHYAKLINED-DHTYLARAVDDFKDQTYFLHEVNENQLKNCIFPLADLTKNEVRK 178
Query: 57 LYPRLTIPME------GIILEAE---------------------TGDFLEKHRGFWFYTI 89
+ +P+ GI E G + +H G YTI
Sbjct: 179 IAADTNLPVAKKKDSVGICFIGERNLKDFLGRFISLKPGDIKDNNGKVIGRHNGSALYTI 238
Query: 90 GQHQELGLLYI-----VYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
GQ Q L + I + YV +KD NN +FV + L + SL +
Sbjct: 239 GQRQGLYIGGIKDMQELPWYVYKKDTLNNEIFVCQGV-----DNPLLFSNSLTI------ 287
Query: 145 EKISQLHSVFYN----CSLTIEHCED-------GGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
+KI ++ + YN SL I H +D+ +V SE + + GQ A FY+
Sbjct: 288 KKIKWINDINYNLPLNISLQIRHQHKPIKALLKKRDDMYIVDFSEPIRAITPGQSAVFYK 347
Query: 194 GRRCLGSGVIL 204
CLG GVI+
Sbjct: 348 DNICLGGGVII 358
>gi|340354720|ref|ZP_08677421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Sporosarcina newyorkensis 2681]
gi|339623119|gb|EGQ27625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Sporosarcina newyorkensis 2681]
Length = 372
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 104/249 (41%), Gaps = 50/249 (20%)
Query: 6 SMEFDYVASGHYANVVHSS---ADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ D++A+GHYA V+ A + + KDQTYFL+ L+Q QL++++F L + +
Sbjct: 121 SLGADFLATGHYAQVLEREDGVAMLRGVDNNKDQTYFLNQLTQEQLQQVMFPLGHLEKSS 180
Query: 63 IP----------------------------------MEGIILEAET--GDFLEKHRGFWF 86
+ + I E +T G + KH G +
Sbjct: 181 VREIAEKAGLATAKKKDSTGICFIGERNFKEFLSEYLPAIPGEMQTMDGKVMGKHDGLMY 240
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLS 140
+TIGQ LG+ + V KD+E N++ V + + YS K + + K L
Sbjct: 241 HTIGQRHGLGIGGSGEPWFAVGKDLERNVLLVEQGFHHDALYSTSLKATDMNICTTKEL- 299
Query: 141 GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
P+ S Y T E GE+ A+V +E + + GQ Y G CLG
Sbjct: 300 ---PKTFSCTAKFRYRQPDTQVTVELSGEE-AIVTFAEPVRAVTPGQAVVLYDGEECLGG 355
Query: 201 GVILEAWDD 209
G I E + D
Sbjct: 356 GTIDEVFKD 364
>gi|304436306|ref|ZP_07396284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370711|gb|EFM24358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 361
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 86/236 (36%), Gaps = 46/236 (19%)
Query: 11 YVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
Y+A+GHYA + H+ K + KDQ+Y L HL+Q + ++F L Y + I
Sbjct: 124 YIATGHYARITHTEDGTYHLRKGIDAAKDQSYVLYHLTQEMMDHVLFPLGDYRKDEIRRM 183
Query: 64 -----------------------------------PMEGIILEAETGDFLEKHRGFWFYT 88
M+ + TG L H G FYT
Sbjct: 184 AEDYGLPVAHKAESQEICFVPRDDYKSYLRTHAPQTMQTGAITDRTGHVLGTHEGIAFYT 243
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + LG+ YV D N V V + F H A L PP K
Sbjct: 244 IGQRRGLGIAAEHPLYVTALDASENRVIVGASDEIF---AHALTASDLSWTLSRPPHKPR 300
Query: 149 QLHS-VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
++ + + Y E G+ V SE + + GQ FY+G LG G I
Sbjct: 301 RVRAKIRYGKREADAWMEPQGDGTVAVHFSEPQRAVTPGQSIVFYEGDAVLGGGSI 356
>gi|336234153|ref|YP_004586769.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoglucosidasius
C56-YS93]
gi|335361008|gb|AEH46688.1| tRNA-specific 2-thiouridylase mnmA [Geobacillus thermoglucosidasius
C56-YS93]
Length = 370
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 106/263 (40%), Gaps = 73/263 (27%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+D S++ DY+A+GHYA + + + K KDQTYFLS L++ L +++F L
Sbjct: 110 VDYALSLDADYIATGHYARIRRENGQVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGE 169
Query: 56 ----------------------------------VLYPRLTIPMEGIILEAETGDFLEKH 81
+ + +P + + + G+ L H
Sbjct: 170 LTKDEVRKIAKELNLVTANKKDSTGICFIGERNFKRFLKNFLPAQPGEIRSLDGEVLGTH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRH--LFHAGSL 136
G +YTIGQ + LG+ YVV+KD+ENN++ V++ K H LF
Sbjct: 230 DGLMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQG------KNHPALFS---- 279
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIE--------------HCEDGGEDIAVVQLSEDDQG 182
+GL IS ++ C+ H G A+V+ + +
Sbjct: 280 ---TGLIASNISFINGDVRPCTFACTAKFRYRQEDQKVTVHVRPNG--TALVEFEKPVKA 334
Query: 183 LAAGQFAAFYQGRRCLGSGVILE 205
+ GQ A FY CLGS VI E
Sbjct: 335 VTPGQVAVFYDNDVCLGSAVIDE 357
>gi|118496723|ref|YP_897773.1| tRNA-specific 2-thiouridylase MnmA [Francisella novicida U112]
gi|194324030|ref|ZP_03057805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella novicida FTE]
gi|166234853|sp|A0Q454.1|MNMA_FRATN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|118422629|gb|ABK89019.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Francisella novicida U112]
gi|194321927|gb|EDX19410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella tularensis subsp. novicida FTE]
Length = 359
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 101/244 (41%), Gaps = 52/244 (21%)
Query: 10 DYVASGHYAN--VVHSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
DY+A+GHYA V+ + K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVRE 178
Query: 54 -----HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYTI 89
+LV + + I E + +FL K H G +YTI
Sbjct: 179 IAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLPAQKGEIHDENGIKIGMHDGLMYYTI 238
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL-P 143
GQ Q LG+ + R + +KD+ENN++ + + + A L ++G+ P
Sbjct: 239 GQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAP 298
Query: 144 PEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 299 ADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGG 355
Query: 201 GVIL 204
GVI+
Sbjct: 356 GVII 359
>gi|296127476|ref|YP_003634728.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Brachyspira murdochii DSM 12563]
gi|296019292|gb|ADG72529.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Brachyspira murdochii DSM 12563]
Length = 352
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 36/154 (23%)
Query: 7 MEFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHL------ 55
+EFD A+GHYA + + + K +KDQ+YFL L+Q QL ++IF +
Sbjct: 122 LEFDKFATGHYAGIKYDEKTKRYLLLRGKNLIKDQSYFLYRLTQNQLSKIIFPMHENTKE 181
Query: 56 ------------------------VLYPRL-TIPMEGIILEAETGDFLEKHRGFWFYTIG 90
Y RL EG I+ +T + L H+G W YT+G
Sbjct: 182 DTRKMAREYNLEVAEKSESQDFFAGEYSRLFDEDREGDIINIDTNEILGHHKGIWHYTVG 241
Query: 91 QHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSF 124
Q + LG+ Y +VV D + N V+V ++F
Sbjct: 242 QRKGLGIAYKEPLFVVSLDSKTNTVYVGNKNHTF 275
>gi|229198523|ref|ZP_04325227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus m1293]
gi|228585026|gb|EEK43140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus m1293]
Length = 376
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 AKEAGLVTAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEKEFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|432950050|ref|XP_004084364.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Oryzias latipes]
Length = 414
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 110/283 (38%), Gaps = 91/283 (32%)
Query: 3 AISSMEFDYVASGHYANV-------------------------------VHSSADHKDKP 31
AI ++ D +A+GHYA +H++AD
Sbjct: 114 AIHTLGADAMATGHYARTSQEDDEVFQQSHVAPPTSLFRDRFQIPNPVRLHTAADQS--- 170
Query: 32 SVKDQTYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI--------- 63
KDQT+FLS +SQ LR+ +F H VL + ++
Sbjct: 171 --KDQTFFLSQISQDALRQTLFPLAGLTKEFVKKMAAEAGLHHVLKKKESMGICFIGERN 228
Query: 64 ----------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENN 113
P G ++ E G + H+G++ T+GQ +G L + +VV+KD+E
Sbjct: 229 FQNFILEYLEPKPGNLVSVEDGAVMGSHQGWFTLTLGQRARIGGLKEPW-FVVDKDVETG 287
Query: 114 IVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ----------LHSV-FYNCSLTIE 162
VFV+ R ++ PP +++ +H + CS+T+
Sbjct: 288 DVFVAPTTNHPALFRDTLRTNRFHWVTRDPPPDLARSQMLECHFRFIHQMALVPCSVTLN 347
Query: 163 HCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
DG + LS + L GQFA Y+G CLGSG I++
Sbjct: 348 --LDGS---VWISLSRPVRALTPGQFAVLYKGDECLGSGKIVQ 385
>gi|78043170|ref|YP_361010.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Carboxydothermus hydrogenoformans Z-2901]
gi|123575599|sp|Q3AA24.1|MNMA_CARHZ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|77995285|gb|ABB14184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Carboxydothermus hydrogenoformans Z-2901]
Length = 365
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 65/251 (25%)
Query: 6 SMEFDYVASGHYANVVHS----------SADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
S+ DY+A+GHYA VV+ D K KDQTY L +L+Q LRRL+ L
Sbjct: 123 SLGMDYMATGHYARVVYKDDIGKYGLFRGVDRK-----KDQTYVLYNLTQDMLRRLLLPL 177
Query: 56 VLYPRLTI--------------PMEGIIL-----------------EAETGDFLE----- 79
Y + + P I E + G+F++
Sbjct: 178 GEYTKEQVRELARKYNLVTADKPESQEICFVPDNDYRKFLKERRGEEIKPGNFVDVNGRV 237
Query: 80 --KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK 137
+H+G+ +YTIGQ + LGL YVV+ E N V + + +F G +
Sbjct: 238 LGQHQGYPYYTIGQRKGLGLALGKPYYVVDIRPETNEVVIG-------EASEIFSPGLIA 290
Query: 138 -----LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
L PE+ + YN E G+D V +E + + GQ FY
Sbjct: 291 SDLNFLWFDEIPERFEAQAQIRYNAKPQPAVVERIGKDKVKVVFNEPQRAITPGQAVVFY 350
Query: 193 QGRRCLGSGVI 203
+G LG G I
Sbjct: 351 RGDELLGGGTI 361
>gi|346724925|ref|YP_004851594.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346649672|gb|AEO42296.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 378
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L QAQL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRGGRWRLLRGADRGKDQSYFLHQLGQAQLAATLFPIGD 168
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
+ T+ P + G + +H
Sbjct: 169 LEKSTLRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARAGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ NN+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + T++ +DG V+ + + GQ Y
Sbjct: 289 HWVTGAPPARRFTCTAQTRYRQPDEPCTVDVQDDGS---VQVRFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G+ CLG VI
Sbjct: 346 DGQECLGGAVI 356
>gi|208780006|ref|ZP_03247349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella novicida FTG]
gi|208744010|gb|EDZ90311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella novicida FTG]
Length = 359
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 101/244 (41%), Gaps = 52/244 (21%)
Query: 10 DYVASGHYAN--VVHSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
DY+A+GHYA V+ + K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVRE 178
Query: 54 -----HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYTI 89
+LV + + I E + +FL K H G +YTI
Sbjct: 179 IAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYTI 238
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL-P 143
GQ Q LG+ + R + +KD+ENN++ + + + A L ++G+ P
Sbjct: 239 GQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAP 298
Query: 144 PEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 299 ADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGG 355
Query: 201 GVIL 204
GVI+
Sbjct: 356 GVII 359
>gi|403049914|ref|ZP_10904398.1| tRNA-specific 2-thiouridylase MnmA [SAR86 cluster bacterium SAR86D]
Length = 359
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 106/254 (41%), Gaps = 68/254 (26%)
Query: 10 DYVASGHYANVVHSSADHK----DKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
DY+A+GHYA + + D K K KDQTYFL +++ + +F
Sbjct: 118 DYIATGHYAKL-ETINDIKYLKRAKDLEKDQTYFLHEVNEKEFENCLFPLENLTKSEVRE 176
Query: 54 ------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+L + I E +++ E G+ + +H+G YT
Sbjct: 177 IAKKNELITADKKDSVGICFVGERNLKDFLNRFIKFEKGLIKDEEGNIIGEHQGSILYTQ 236
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
GQ Q L + + R YV KDI NN ++V + + L + +GL
Sbjct: 237 GQRQGLNIGGVKGRDELPWYVYRKDIINNEIYVCQGVNN-----------KLLMKNGLTL 285
Query: 145 EKISQLHSVFY----NCSLTIEH------CEDGGE-DIAVVQLSEDDQGLAAGQFAAFYQ 193
E I+ ++++ Y NCS+ I H C+ E D+ SE + +A GQ A FY
Sbjct: 286 EHINWINNINYEFPLNCSVQIRHQHKPVKCKLVYENDLFKTVFSEPIRAIAPGQSAVFYN 345
Query: 194 GRRCLGSGVILEAW 207
CLG G+I E +
Sbjct: 346 NEICLGGGIITETF 359
>gi|42783525|ref|NP_980772.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus ATCC 10987]
gi|402555472|ref|YP_006596743.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus FRI-35]
gi|423573926|ref|ZP_17550045.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-D12]
gi|423603956|ref|ZP_17579849.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD102]
gi|73919894|sp|Q730D7.1|MNMA_BACC1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|42739454|gb|AAS43380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus ATCC 10987]
gi|401212495|gb|EJR19238.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-D12]
gi|401245642|gb|EJR51995.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD102]
gi|401796682|gb|AFQ10541.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus FRI-35]
Length = 371
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEKEFK 302
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|227509407|ref|ZP_03939456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus brevis subsp. gravesensis ATCC 27305]
gi|227191119|gb|EEI71186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus brevis subsp. gravesensis ATCC 27305]
Length = 374
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 104/255 (40%), Gaps = 50/255 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DY+A+GHYA + H + KDQTYFLS LS QL R++F +
Sbjct: 113 LDYALELGADYIATGHYAQLTRDEDGHNHLLRASDGNKDQTYFLSQLSANQLDRVMFPIG 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
++ P + +P + G+ +
Sbjct: 173 NLVKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLPATPGKMMTVDGEVKGQ 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ + +VV KD++ NI++V + Y++ A +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKKNILYVGKGYHNELLYADYLEASDI 292
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ L + + F + +T+ H D G+ + V + + GQ FY
Sbjct: 293 HWVNNLDRGQDFHCTAKFRYRQKDTGVTV-HLSDDGQKVRV-DFDAPVRAITPGQAVVFY 350
Query: 193 QGRRCLGSGVILEAW 207
G CLGS +I A+
Sbjct: 351 DGEECLGSAIIDAAY 365
>gi|229086959|ref|ZP_04219116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-44]
gi|228696335|gb|EEL49163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-44]
Length = 376
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYIDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNRAKEKGFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ +D + + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQEDNKVTVQIVDD---NTIRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|65321763|ref|ZP_00394722.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Bacillus anthracis str. A2012]
gi|386738286|ref|YP_006211467.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. H9401]
gi|384388138|gb|AFH85799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. H9401]
Length = 376
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|165872748|ref|ZP_02217376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0488]
gi|167636496|ref|ZP_02394793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0442]
gi|167638584|ref|ZP_02396860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0193]
gi|170689637|ref|ZP_02880819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0465]
gi|170709396|ref|ZP_02899807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0389]
gi|177653267|ref|ZP_02935519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0174]
gi|190566853|ref|ZP_03019769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. Tsiankovskii-I]
gi|227817175|ref|YP_002817184.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. CDC
684]
gi|229601635|ref|YP_002868683.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A0248]
gi|164711524|gb|EDR17073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0488]
gi|167513432|gb|EDR88802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0193]
gi|167528089|gb|EDR90886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0442]
gi|170125695|gb|EDS94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0389]
gi|170666407|gb|EDT17188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0465]
gi|172081549|gb|EDT66621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0174]
gi|190561844|gb|EDV15813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. Tsiankovskii-I]
gi|227004048|gb|ACP13791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. CDC 684]
gi|229266043|gb|ACQ47680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. A0248]
Length = 372
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 124 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 183
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 184 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 243
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 244 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 303
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 304 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 360
Query: 206 AW 207
+
Sbjct: 361 VY 362
>gi|118479554|ref|YP_896705.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis str. Al
Hakam]
gi|228929441|ref|ZP_04092462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228935717|ref|ZP_04098530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228948110|ref|ZP_04110394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228987648|ref|ZP_04147762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229093467|ref|ZP_04224570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-42]
gi|229123937|ref|ZP_04253129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 95/8201]
gi|229141133|ref|ZP_04269675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST26]
gi|229158012|ref|ZP_04286083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus ATCC 4342]
gi|118418779|gb|ABK87198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis str. Al Hakam]
gi|228625465|gb|EEK82221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus ATCC 4342]
gi|228642411|gb|EEK98700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST26]
gi|228659239|gb|EEL14887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 95/8201]
gi|228689938|gb|EEL43742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-42]
gi|228772108|gb|EEM20560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228811468|gb|EEM57805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228823955|gb|EEM69774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830229|gb|EEM75845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 376
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|319940179|ref|ZP_08014532.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus
1_2_62CV]
gi|319810650|gb|EFW06980.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus
1_2_62CV]
Length = 373
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 104/263 (39%), Gaps = 63/263 (23%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DYVA+GHYA +VH + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYARAKRDEDGIVHM---LRGVDNGKDQTYFLSQLSQEQLQKTMF 169
Query: 54 HLVLYPRLTIPM---------------EGIILEAET------GDFLEKHRGFWFYTIGQH 92
L + + GI E G++L G G+
Sbjct: 170 PLGHLEKSEVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTVDGRD 229
Query: 93 --QELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFH 132
+ GL+Y +VV KD+ NI++V + +Y+ +
Sbjct: 230 MGEHAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYNDNLMSTSLD 289
Query: 133 AGSLKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A + +P E + + F ++T++ D A+V +E + + G
Sbjct: 290 ASQVHFTRKMPAEFTMECTAKFRYRQPDSKVTVTVKG------DKAIVNFAEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDD 209
Q FY G CLG G+I A+ D
Sbjct: 344 QAVVFYDGEECLGGGLIDNAYKD 366
>gi|303232364|ref|ZP_07319057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Atopobium vaginae PB189-T1-4]
gi|302481548|gb|EFL44615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Atopobium vaginae PB189-T1-4]
Length = 392
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 94/265 (35%), Gaps = 76/265 (28%)
Query: 10 DYVASGHYANV----------------VHSSADHKDKPSV-------------KDQTYFL 40
D++A+GHYA V V SSAD + + KDQTYFL
Sbjct: 128 DFIATGHYAQVDAGALAGATADVADANVASSADSGNADATFPVSPLIRAADEHKDQTYFL 187
Query: 41 SHLSQAQLRRLIFHLVLYPRLTIPME---------------------------------- 66
+ A++ + IF + P E
Sbjct: 188 WRVPAARIAKTIFPIGNIPSKKQVRELCREFGLGVEQKPDSDGICFVGEVGIRTFLLDTL 247
Query: 67 ----GIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYY 122
G I+E ETG L +H G + YTIGQ + L L RYVV D NIV+VS N
Sbjct: 248 SQKAGDIVEWETGTVLGQHDGAFLYTIGQRRGLNLGGGPARYVVRTDTARNIVYVSSNIA 307
Query: 123 SFDKKRHLFHAGSLKL----LSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSE 178
+ H SL L G P ++ + + C + ++ E
Sbjct: 308 CEE-----LHCTSLALERTHWLGAAPTPGARYCVRLRHTGALVPCCVRYAGEQPTLEFDE 362
Query: 179 DDQGLAAGQFAAFYQGRRCLGSGVI 203
+A GQ A Y GRR G G I
Sbjct: 363 PIMRIAPGQSAVLYDGRRVCGGGFI 387
>gi|66472552|ref|NP_001018435.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Danio rerio]
gi|82192768|sp|Q503J2.1|MTU1_DANRE RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
gi|63101232|gb|AAH95308.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Danio
rerio]
gi|182891436|gb|AAI64518.1| Trmu protein [Danio rerio]
Length = 416
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 110/277 (39%), Gaps = 81/277 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD--------------------------HKDKPSVKDQ 36
A++++ D +A+GHYA + ++ +KDQ
Sbjct: 114 AVNTLGADAMATGHYARTSQEDEEVFQQKLTEAPKSLFRDRFEIRKPVRLYQGADLLKDQ 173
Query: 37 TYFLSHLSQAQLRRLIFHL-------------------VLYPRLTI-------------- 63
T+FLS +SQ LR +F L VL + ++
Sbjct: 174 TFFLSQISQDALRHTLFPLAGLTKGYVKKIAAEAGFQHVLKKKESMGICFIGKRDFENFI 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E G + KH+G++ T+GQ +G + +VV+KD+ VFV
Sbjct: 234 LEYLEPRPGNFVSIEDGQIMGKHKGWFTLTLGQRARIGGRADAW-FVVDKDVTTADVFVC 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPPEKI--SQL---HSVFYN------CSLTIEHCEDG 167
+ + R ++ PP ++ +Q+ H F N C++T+ DG
Sbjct: 293 PSTFHPALFRDTLQTDRFHWIAEEPPAELVHTQMMDCHFCFNNRMPLTPCTVTLN--LDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
V + E +G+A GQFA Y+G CLGSG I+
Sbjct: 351 S---VWVMVKEPMRGMATGQFAVLYKGHECLGSGKII 384
>gi|228917030|ref|ZP_04080590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228842637|gb|EEM87725.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 376
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQDDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|427414204|ref|ZP_18904394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Veillonella ratti ACS-216-V-Col6b]
gi|425714580|gb|EKU77583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Veillonella ratti ACS-216-V-Col6b]
Length = 353
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 96/239 (40%), Gaps = 52/239 (21%)
Query: 11 YVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL---------- 55
++ +GHYA V ++ A HK KDQ+Y L L+Q L L+F L
Sbjct: 117 HMVTGHYAQVRYNEATKLYEVHKGADPSKDQSYVLYTLNQDILSHLMFPLGAQKKTLTRE 176
Query: 56 ----------------------------VLYPRLT-IPMEGIILEAETGDFLEKHRGFWF 86
+ +LT P G I+ E G+ L +H G +
Sbjct: 177 MANDRDLPVANKPDSEDICFLPNHNYQGFIQKQLTEAPKSGNIVH-ENGEILGRHNGLFN 235
Query: 87 YTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK 146
YTIGQ + LG+ Y YVV D E N V V + F + H LSG P++
Sbjct: 236 YTIGQRKGLGVAYKYPLYVVRLDGEKNEVIVGPDESLFTNRMICKH---YNFLSGTIPKE 292
Query: 147 ISQLHSVFY--NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ + Y N SL + D ++ V + + GQ FY+G + LG GVI
Sbjct: 293 LHAAGKIRYAANPSLCVARIFD--DETMEVVFETPQRAITPGQSVVFYEGTQVLGGGVI 349
>gi|379727605|ref|YP_005319790.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Melissococcus plutonius DAT561]
gi|376318508|dbj|BAL62295.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Melissococcus plutonius DAT561]
Length = 373
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 101/248 (40%), Gaps = 50/248 (20%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-- 63
DY+A+GHYA + + + + + KDQTYFLS LSQ QL + +F L + +
Sbjct: 121 DYIATGHYAQIERTEDGNVRLLRGIDTNKDQTYFLSQLSQEQLSKAMFPLGGMEKTQVRE 180
Query: 64 ----------------------------------PMEGIILEAETGDFLEKHRGFWFYTI 89
P + + ETG+ H G +YTI
Sbjct: 181 IAAKANLATANKKDSTGVCFIGEKNFKKFLSEYLPAKKGKMVTETGEIKGTHDGLMYYTI 240
Query: 90 GQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
GQ Q LG+ +V+ KD+ N ++V + ++ A +++
Sbjct: 241 GQRQGLGIGGGGASQEPWFVIGKDLTTNTLYVGQGFHHPLLYATQLDASNIQFTKNSSMP 300
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K Q + F + ++T++ CED A V SE + + GQ FY G CLG G
Sbjct: 301 KEFQCTAKFRYRQQDTAVTVQLCEDA--TCAKVIFSEPVRAITPGQAVVFYDGMECLGGG 358
Query: 202 VILEAWDD 209
I A+ D
Sbjct: 359 TIDRAYQD 366
>gi|333394724|ref|ZP_08476543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus coryniformis subsp. coryniformis KCTC
3167]
gi|420145242|ref|ZP_14652714.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398403148|gb|EJN56417.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 374
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 60/263 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
+D + DY+A+GHYA + AD + KDQTYFLS LSQ QL +++F L
Sbjct: 113 LDYALDLGADYIATGHYARI-RRDADGTAHMLRGVDGNKDQTYFLSQLSQNQLNKVMFPL 171
Query: 56 --VLYPRLT----------------------------------IPMEGIILEAETGDFLE 79
+ P + +P + + G+
Sbjct: 172 GEMTKPEVREIAAKYDLATAKKKDSMGICFIGEKNFKQFLSQYLPAQPGKMMTVDGEVKG 231
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF---- 131
H G +YTIGQ Q LG+ +V+ KD+ N ++V + +++ HL+
Sbjct: 232 THDGLMYYTIGQRQGLGIGGNGTSNDPWFVIGKDLTTNTLYVGQGFHN----EHLYATHL 287
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A + L + + F + +T+ D + A ++ E + + GQ
Sbjct: 288 TASKFNFTTDLDRGDTFHVTAKFRYRQKDTGVTVHMNAD--QTTATIEFDEPVRAITPGQ 345
Query: 188 FAAFYQGRRCLGSGVILEAWDDQ 210
Y G CLGSG I A++D+
Sbjct: 346 AVVLYDGDECLGSGTIDAAYNDE 368
>gi|387823675|ref|YP_005823146.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Francisella cf. novicida 3523]
gi|328675274|gb|AEB27949.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)
-methyltransferase [Francisella cf. novicida 3523]
Length = 358
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 98/244 (40%), Gaps = 52/244 (21%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
DY+A+GHYA ++ K KDQTYFL L Q QLR+ IF
Sbjct: 118 DYIATGHYAQTRQAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNVEKSKVRE 177
Query: 54 -----HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYTI 89
+LV + + I E + +FL K H G +YTI
Sbjct: 178 IAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYTI 237
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
GQ Q LG+ + R + +KD+ NN++ + + + A L ++G+ P
Sbjct: 238 GQRQGLGIGGVKNRPEVPWFAAKKDLANNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAP 297
Query: 145 E-KISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
K V Y + S +E +DG + V E + + GQ FY CLG
Sbjct: 298 AGKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDEPQRAITPGQSVVFYIDDVCLGG 354
Query: 201 GVIL 204
G+I+
Sbjct: 355 GIII 358
>gi|30264466|ref|NP_846843.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Ames]
gi|47529924|ref|YP_021273.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187287|ref|YP_030539.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Sterne]
gi|254684152|ref|ZP_05148012.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str.
CNEVA-9066]
gi|254736499|ref|ZP_05194205.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Western
North America USA6153]
gi|254741537|ref|ZP_05199224.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Kruger
B]
gi|254751364|ref|ZP_05203401.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Vollum]
gi|254757696|ref|ZP_05209723.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str.
Australia 94]
gi|421506649|ref|ZP_15953572.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. UR-1]
gi|421638466|ref|ZP_16079062.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. BF1]
gi|73919893|sp|Q81JE5.1|MNMA_BACAN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|30259124|gb|AAP28329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. Ames]
gi|47505072|gb|AAT33748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. 'Ames Ancestor']
gi|49181214|gb|AAT56590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus anthracis str. Sterne]
gi|401823642|gb|EJT22789.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. UR-1]
gi|403394892|gb|EJY92132.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. BF1]
Length = 371
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 302
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|381170036|ref|ZP_09879197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|380689559|emb|CCG35684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas citri pv. mangiferaeindicae LMG 941]
Length = 378
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 169 LEKSTLRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ NN+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + S T++ +DG V+ + + GQ Y
Sbjct: 289 HWVTGAPPARRFSCTAQTRYRQPDESCTVDVQDDGS---VQVRFERPQRVVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G CLG VI
Sbjct: 346 DGEECLGGAVI 356
>gi|423417685|ref|ZP_17394774.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3X2-1]
gi|401106856|gb|EJQ14813.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3X2-1]
Length = 371
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEKEFK 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|344172370|emb|CCA85006.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia syzygii R24]
Length = 370
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 100/254 (39%), Gaps = 57/254 (22%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + + DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLKAFDH-----TKDQSYFLHRLNQAQLCRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTRVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KD+ N ++V + + H
Sbjct: 225 TIGQHIGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLS--EDDQGLAAGQFA 189
HA L ++G PP + +QL + T C + + L+ + + GQ A
Sbjct: 285 HADDLSWVAGHPPAEGTQL-AAKTRYRQTDAPCAVTRAAVGALTLTFPQAQWAVTPGQSA 343
Query: 190 AFYQGRRCLGSGVI 203
Y G CLG G+I
Sbjct: 344 VLYDGDVCLGGGII 357
>gi|196034345|ref|ZP_03101754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus W]
gi|195992887|gb|EDX56846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus W]
Length = 372
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 124 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 183
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 184 AKKAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 243
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 244 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 303
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 304 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 360
Query: 206 AW 207
+
Sbjct: 361 VY 362
>gi|119593830|gb|EAW73424.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
CRA_c [Homo sapiens]
Length = 281
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 99 PRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFVAPRTDH 157
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 158 PALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 215
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
VQ + LA GQFA FY+G CLGSG IL
Sbjct: 216 AVQAV---RALATGQFAVFYKGDECLGSGKILR 245
>gi|451823074|ref|YP_007459348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Kinetoplastibacterium desouzaii TCC079E]
gi|451775874|gb|AGF46915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Kinetoplastibacterium desouzaii TCC079E]
Length = 364
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 99/240 (41%), Gaps = 48/240 (20%)
Query: 12 VASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL---------VLYP 59
+A+GHYA + + ++ ++ KDQ+YFL L+Q QL R +F + L
Sbjct: 124 IATGHYARIKKNENKYQLLKAIDLNKDQSYFLYRLNQEQLSRSLFPIGNLHKKDVRALAK 183
Query: 60 RLTIP------MEGI--ILEAETGDFLEK-------------------HRGFWFYTIGQH 92
++ +P GI I E FL K H G FYTIGQ
Sbjct: 184 KIGLPNAYKKDSTGICFIGEKSFTTFLNKYIPFKRGPILTLDGKQIGEHNGISFYTIGQR 243
Query: 93 QELGLLYIVYR-------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
+ LG+ + YVV+KD+ NNI++VS+ S + L A + + G P+
Sbjct: 244 KGLGIGGVKNLSVSDNAWYVVKKDLYNNIIYVSQGRDSSLLQSKLLEAEDIHWIEGCEPQ 303
Query: 146 KISQ-LHSVFYNCSLTIEHCE-DGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
K+ L S C ++ +V E+ + GQ Y CLG G+I
Sbjct: 304 KLDNYLFSAKSRYRQQDSSCTIKTNQNKLIVSFLENQWAITEGQSVVIYDNDVCLGGGII 363
>gi|393200334|ref|YP_006462176.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Solibacillus silvestris StLB046]
gi|406668017|ref|ZP_11075765.1| tRNA-specific 2-thiouridylase mnmA [Bacillus isronensis B3W22]
gi|327439665|dbj|BAK16030.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase [Solibacillus silvestris StLB046]
gi|405384128|gb|EKB43579.1| tRNA-specific 2-thiouridylase mnmA [Bacillus isronensis B3W22]
Length = 372
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 97/247 (39%), Gaps = 66/247 (26%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V H K + KDQTYFL+ L+ QL +++F + P+ +
Sbjct: 125 DYLATGHYARVAHDENGVKMLRGIDNNKDQTYFLNQLTSEQLEKVMFPIGHLPKPEVRKI 184
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + +E G+ H G +YT+G
Sbjct: 185 AEEAGLATAKKKDSTGICFIGERNFKEFLSQYLPAQPGNMETFDGEVKGTHDGLMYYTLG 244
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL--KLLSGLPPEKI 147
Q LG+ +VV KD+ N+++V + FH +L L+ +
Sbjct: 245 QRHGLGIGGDGEPWFVVGKDLTRNVLYVGQG----------FHHDALYSDALTAVKMSFT 294
Query: 148 SQLHSVFYNCS-----------LTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+ + +NC+ +T+ EDG A ++ +E + + GQ Y G
Sbjct: 295 GEAKTGTFNCTAKFRYRQEDSPVTVTMREDG---TAYIEFAEPVRAITPGQAVVLYDGEE 351
Query: 197 CLGSGVI 203
CLG G I
Sbjct: 352 CLGGGTI 358
>gi|187930035|ref|YP_001900522.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia pickettii 12J]
gi|229486417|sp|B2UC85.1|MNMA_RALPJ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|187726925|gb|ACD28090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ralstonia pickettii 12J]
Length = 370
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 99/259 (38%), Gaps = 61/259 (23%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + + DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLKAFDH-----TKDQSYFLHRLNQAQLSRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEMPKTKVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KD+ N ++V + + H
Sbjct: 225 TIGEHIGLAFYTLGQRKGIGIGGSRDGTGDAWYVARKDMAANTLYVVQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
HA L ++G P + + L + + T+ G + SE + GQ
Sbjct: 285 HADDLSWVAGHAPAEGTHLGAKTRYRQADAPCTVARAAGGA---LTLTFSEAQWAVTPGQ 341
Query: 188 FAAFYQGRRCLGSGVILEA 206
A Y G CLG G+I A
Sbjct: 342 SAVLYDGEVCLGGGIISAA 360
>gi|114566016|ref|YP_753170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
gi|122318873|sp|Q0AZQ5.1|MNMA_SYNWW RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|114336951|gb|ABI67799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 338
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 97/254 (38%), Gaps = 64/254 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV----------KDQTYFLSHLSQAQLRR 50
+ A + D VASGHYA + D+ DK KDQ+YFL L Q QL R
Sbjct: 97 LKAALDLGADKVASGHYARI-----DYDDKSQCYRLMKGVDPRKDQSYFLYRLKQQQLSR 151
Query: 51 LIF-----------------HLVL---------------YPRLTIP----MEGIILEAET 74
LIF HL L Y P EG L+ T
Sbjct: 152 LIFPLGGYRKEEVREMARRYHLQLAEEKESQEVCFIPGDYREFIRPHVSYKEGSFLD-RT 210
Query: 75 GDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFD-----KKRH 129
G L +HRG FYTIGQ + L + YV++ D E N + + N F K+ H
Sbjct: 211 GKILGRHRGIPFYTIGQRRGLAVSAGRPLYVLKIDPEKNQILLGENEVLFSKLLRFKQNH 270
Query: 130 LFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +LL K+ S I HC + +DI + E + GQ
Sbjct: 271 FICSQDFELLI-----KVKAKIRYAARESEAILHCIE--DDIWELVFDEAQRAATPGQSV 323
Query: 190 AFYQGRRCLGSGVI 203
+YQG LG G I
Sbjct: 324 VYYQGDYVLGGGTI 337
>gi|196039389|ref|ZP_03106695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus NVH0597-99]
gi|206976034|ref|ZP_03236944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus H3081.97]
gi|217961886|ref|YP_002340456.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus AH187]
gi|218905591|ref|YP_002453425.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus AH820]
gi|225866378|ref|YP_002751756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 03BB102]
gi|376268294|ref|YP_005121006.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus F837/76]
gi|196030016|gb|EDX68617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus NVH0597-99]
gi|206745786|gb|EDZ57183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus H3081.97]
gi|217066211|gb|ACJ80461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH187]
gi|218535576|gb|ACK87974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH820]
gi|225789110|gb|ACO29327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 03BB102]
gi|364514094|gb|AEW57493.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Bacillus cereus F837/76]
Length = 372
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 124 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 183
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 184 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 243
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 244 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 303
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 304 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 360
Query: 206 AW 207
+
Sbjct: 361 VY 362
>gi|13508161|ref|NP_110110.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma pneumoniae M129]
gi|377822738|ref|YP_005175664.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma pneumoniae 309]
gi|385326999|ref|YP_005881431.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma pneumoniae FH]
gi|2496370|sp|P75365.1|MNMA_MYCPN RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|1674103|gb|AAB96067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma pneumoniae M129]
gi|301633672|gb|ADK87226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma pneumoniae FH]
gi|358640706|dbj|BAL22000.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma pneumoniae 309]
gi|440453569|gb|AGC04328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma pneumoniae M129-B7]
Length = 370
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 48/235 (20%)
Query: 13 ASGHYANVVHSS-----ADHKDKPSVKDQTYFLSHLSQAQLRRLIF-------------- 53
A+GHYA + + A KDK KDQTYFL+H+ AQL+ ++F
Sbjct: 135 ATGHYAALSWDNNQPLLAIPKDKH--KDQTYFLAHVKPAQLQDVVFPLAHLLKTEVRQIA 192
Query: 54 ----------------------HLVLYPRLTIPME-GIILEAETGDFLEKHRGFWFYTIG 90
H + + +P++ G+I + +T L H G WFYT G
Sbjct: 193 LAHHFSVATKKDSTGICFIGERHFSDFLKNYLPVKPGVIYDWKTQRQLGSHEGVWFYTTG 252
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q L L R +VVEKD++ N ++VS + D +R L P +
Sbjct: 253 QRSGLNLGGQAARNFVVEKDLKTNTLYVSSD--PEDLQRRGITLSHFNWLYQPNPLTQTV 310
Query: 150 LHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY-QGRRCLGSGVI 203
L + + L H ++ VQL + + GQ+ Y Q CLGSG+I
Sbjct: 311 LVRIRHAQPLVQGHITVQPNNVVQVQLDQPIDRVTNGQYGVLYTQNGICLGSGII 365
>gi|89100972|ref|ZP_01173817.1| TrmU [Bacillus sp. NRRL B-14911]
gi|89084308|gb|EAR63464.1| TrmU [Bacillus sp. NRRL B-14911]
Length = 370
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 46/248 (18%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DY+A+GHYA V H K + KDQTYFL+ L++ QL +++F + +
Sbjct: 119 SLGADYLATGHYARVEHGENGVKMLRGLDENKDQTYFLNQLTEEQLSKVMFPIGSIEKSE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + +E G+ + +H G +
Sbjct: 179 VREIAKKAGLATAAKKDSTGICFIGERNFKEFLGNYLPAQPGSMETMEGETVGRHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +V+ KD++ N+++V + + + A + +S P E
Sbjct: 239 YTIGQRHGLGIGGAGDPWFVIGKDLKRNVLYVGQGFDNEKLYSDSIIADKVSWVSKAPGE 298
Query: 146 KISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
Y + S+T+ E+G A + + + GQ FY G CLG G
Sbjct: 299 TFECTAKFRYRQPDNSVTVTLLENGQ---AKITFHSPIRAVTPGQAVVFYDGEVCLGGGT 355
Query: 203 ILEAWDDQ 210
I ++++
Sbjct: 356 IDRVFNNE 363
>gi|47566584|ref|ZP_00237406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus G9241]
gi|49481478|ref|YP_038446.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141111|ref|YP_085718.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus E33L]
gi|222097839|ref|YP_002531896.1| tRNA-specific 2-thiouridylase mnma [Bacillus cereus Q1]
gi|254724677|ref|ZP_05186460.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A1055]
gi|300119218|ref|ZP_07056915.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1]
gi|301055904|ref|YP_003794115.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus biovar anthracis str. CI]
gi|375286400|ref|YP_005106839.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus NC7401]
gi|423354887|ref|ZP_17332512.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus IS075]
gi|423373644|ref|ZP_17350983.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus AND1407]
gi|423549864|ref|ZP_17526191.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus ISP3191]
gi|423570634|ref|ZP_17546879.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-A12]
gi|71658010|sp|Q634E9.1|MNMA_BACCZ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|73919896|sp|Q6HDD0.1|MNMA_BACHK RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205814924|sp|A0RJ05.2|MNMA_BACAH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|254811444|sp|B9IYG1.1|MNMA_BACCQ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|47556614|gb|EAL14946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus G9241]
gi|49333034|gb|AAT63680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|51974580|gb|AAU16130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus E33L]
gi|221241897|gb|ACM14607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Q1]
gi|298723438|gb|EFI64183.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1]
gi|300378073|gb|ADK06977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus biovar anthracis str. CI]
gi|358354927|dbj|BAL20099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus NC7401]
gi|401085771|gb|EJP94007.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus IS075]
gi|401095848|gb|EJQ03901.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus AND1407]
gi|401189480|gb|EJQ96530.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus ISP3191]
gi|401203830|gb|EJR10665.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MSX-A12]
Length = 371
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 302
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|336392805|ref|ZP_08574204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus coryniformis subsp. torquens KCTC 3535]
Length = 374
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 60/263 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
+D + DY+A+GHYA + AD + KDQTYFLS LSQ QL +++F L
Sbjct: 113 LDYALDLGADYIATGHYARI-RRDADGTAHMLRGVDGNKDQTYFLSQLSQNQLNKVMFPL 171
Query: 56 --VLYPRLT----------------------------------IPMEGIILEAETGDFLE 79
+ P + +P + + G+
Sbjct: 172 GEMTKPEVREIAAKYDLATAKKKDSMGICFIGEKNFKQFLSQYLPAQPGKMMTVDGEVKG 231
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF---- 131
H G +YTIGQ Q LG+ +V+ KD+ N ++V + +++ HL+
Sbjct: 232 THDGLMYYTIGQRQGLGIGGNGTSNDPWFVIGKDLTTNTLYVGQGFHN----EHLYATHL 287
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A + L + + F + +T+ D + A ++ E + + GQ
Sbjct: 288 TASKFNFTTDLDRGDTFHVTAEFRYRQKDTGVTVHMNAD--QTTATIEFDEPVRAITPGQ 345
Query: 188 FAAFYQGRRCLGSGVILEAWDDQ 210
Y G CLGSG I A++D+
Sbjct: 346 AVVLYDGDECLGSGTIDAAYNDE 368
>gi|254876064|ref|ZP_05248774.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254842085|gb|EET20499.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 359
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 98/246 (39%), Gaps = 56/246 (22%)
Query: 10 DYVASGHYANVVHSSADH------KDKPSVKDQTYFLSHLSQAQLRRLIF---------- 53
DY+A+GHYA AD K KDQTYFL L Q QL++ +F
Sbjct: 119 DYIATGHYART--KVADDGSVQLVKGLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKSRV 176
Query: 54 -------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFY 87
+LV + + I E + DFL K H G +Y
Sbjct: 177 REIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLPAQKGEIHDENGIKIGMHDGLMYY 236
Query: 88 TIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG- 141
TIGQ Q LG+ + R + +KD+ENN++ + + + A L ++G
Sbjct: 237 TIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSWVAGS 296
Query: 142 LPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
P + V Y + S ++E DG ++ E + + GQ FY CL
Sbjct: 297 APADSFRCSAKVRYRQKDQSCSVEVNNDGSVNVV---FDEPQRAITPGQSVVFYDNDVCL 353
Query: 199 GSGVIL 204
G G+I+
Sbjct: 354 GGGIII 359
>gi|373857685|ref|ZP_09600426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus sp. 1NLA3E]
gi|372452817|gb|EHP26287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus sp. 1NLA3E]
Length = 371
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 103/244 (42%), Gaps = 59/244 (24%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF-----------HL 55
DY+A+GHYA V + +K + KDQTYFL+ LSQ QL +++F L
Sbjct: 123 DYLATGHYARVEYRDGAYKMLRGIDENKDQTYFLNQLSQTQLEKVMFPIGNLEKSKVREL 182
Query: 56 VLYPRLT-------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
L L +P + +E G+ + +H G +YTIG
Sbjct: 183 ALKANLATATKKDSTGICFIGERNFKDFLGNYLPAQPGNMETFDGEIMGRHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ +V+ KD+E NI++V + FD ++ A +S + +Q
Sbjct: 243 QRHGLGIGGSGDPWFVIGKDLERNILYVGQ---GFDHEKLYSEAIIATDISWTTSKPFAQ 299
Query: 150 LHSVFYNCSLTIEHCEDGGEDIAVVQLSED-------DQGLAA---GQFAAFYQGRRCLG 199
+ C+ + + ++ +VQ+ +D DQ + A GQ FY G CLG
Sbjct: 300 E----FECTAKFRYRQP--DNKVLVQILDDQKVKVIFDQPIRAVTPGQAVVFYNGEECLG 353
Query: 200 SGVI 203
I
Sbjct: 354 GATI 357
>gi|225621511|ref|YP_002722770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira hyodysenteriae WA1]
gi|225216332|gb|ACN85066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira hyodysenteriae WA1]
Length = 352
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 36/154 (23%)
Query: 7 MEFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHL------ 55
+EFD A+GHYA V + + K +KDQ+YFL L+Q QL +++F +
Sbjct: 122 LEFDKFATGHYAGVKYDEKTKRYLLLRGKNLIKDQSYFLYRLTQDQLSKIMFPMHENTKE 181
Query: 56 ------------------------VLYPRL-TIPMEGIILEAETGDFLEKHRGFWFYTIG 90
Y RL EG I+ +T + L H+G W YT+G
Sbjct: 182 DTRNIAREYNLDVAEKSESQDFFAGEYHRLFDEDKEGSIINIDTNEILGHHKGIWHYTVG 241
Query: 91 QHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSF 124
Q + LG+ Y ++V D E N V+V ++F
Sbjct: 242 QRKGLGIAYKEPLFIVALDSETNTVYVGNKNHTF 275
>gi|402567572|ref|YP_006616917.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cepacia GG4]
gi|402248769|gb|AFQ49223.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cepacia GG4]
Length = 382
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 102/261 (39%), Gaps = 71/261 (27%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSA--------DHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D S++ + +A+GHYA V DH KDQ+YFL L+QAQL + +
Sbjct: 110 LDHAMSLDAEMIATGHYARVRERDGRFELLKAFDH-----TKDQSYFLHRLNQAQLSKTM 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTKVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPMKTPDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNY-YSFDKKRHL 130
+ +H G FYT GQ + +GL +V KDI +N ++V + + + + R L
Sbjct: 225 IVGEHIGLAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQL 284
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEH------CEDGGEDIAVVQLSEDDQ--G 182
AG++ ++G PP ++C + C G D L+ DD
Sbjct: 285 V-AGNVSWVAGEPPAD-------GFSCGAKTRYRQADAGCSFGRADAGRFSLAFDDAQWA 336
Query: 183 LAAGQFAAFYQGRRCLGSGVI 203
+ GQ A Y G CLG G+I
Sbjct: 337 VTPGQSAVLYDGEICLGGGII 357
>gi|78047602|ref|YP_363777.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|123585152|sp|Q3BTY6.1|MNMA_XANC5 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|78036032|emb|CAJ23723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 378
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 98/251 (39%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L QAQL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRGGRWRLLRGADRGKDQSYFLHQLGQAQLAATLFPIGD 168
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
+ T+ P + G + +H
Sbjct: 169 LEKSTLRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARAGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ NN+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + T++ +DG V+ + + GQ Y
Sbjct: 289 HWVTGAPPARRFTCTAQTRYRQPDEPCTVDVQDDGS---VQVRFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G CLG VI
Sbjct: 346 DGEECLGGAVI 356
>gi|402564126|ref|YP_006606850.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis HD-771]
gi|423358568|ref|ZP_17336071.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD022]
gi|434377563|ref|YP_006612207.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis HD-789]
gi|401084440|gb|EJP92686.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD022]
gi|401792778|gb|AFQ18817.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis HD-771]
gi|401876120|gb|AFQ28287.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis HD-789]
Length = 371
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 55/246 (22%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ L+ + G K+ +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHN----ELLYGDEVIATNVGWVSNKVKE 298
Query: 150 LHSVFYNCSLTIEHCEDGG--------EDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ C+ + ++ E+ + E + + GQ FY G CLG
Sbjct: 299 TE---FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDGDECLGGA 355
Query: 202 VILEAW 207
I E +
Sbjct: 356 TIDEVY 361
>gi|227524073|ref|ZP_03954122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus hilgardii ATCC 8290]
gi|227088812|gb|EEI24124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus hilgardii ATCC 8290]
Length = 374
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 50/255 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DY+A+GHYA + H + KDQTYFLS LS QL R++F +
Sbjct: 113 LDYALELGADYIATGHYAQLTRDEDGHNHLLRASDGNKDQTYFLSQLSANQLDRVMFPIG 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
++ P + +P + G+ +
Sbjct: 173 NLVKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLPATPGKMMTVDGEVKGQ 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ + +V+ KD++ NI++V + Y++ A +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDI 292
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ L + + F + +T+ H D G+ + V + + GQ FY
Sbjct: 293 HWVNNLDRGQDFHCTAKFRYRQRDTGVTV-HLSDDGQKVRV-DFDAPVRAITPGQAVVFY 350
Query: 193 QGRRCLGSGVILEAW 207
G CLGS +I A+
Sbjct: 351 DGEECLGSAIIDAAY 365
>gi|218899565|ref|YP_002447976.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus G9842]
gi|218543622|gb|ACK96016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus G9842]
Length = 372
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 55/246 (22%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 124 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 183
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 184 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 243
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ L+ + G K+ +
Sbjct: 244 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHN----ELLYGDEVIATNVGWVSNKVKE 299
Query: 150 LHSVFYNCSLTIEHCEDGG--------EDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ C+ + ++ E+ + E + + GQ FY G CLG
Sbjct: 300 TE---FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDGDECLGGA 356
Query: 202 VILEAW 207
I E +
Sbjct: 357 TIDEVY 362
>gi|170691401|ref|ZP_02882566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia graminis C4D1M]
gi|170143606|gb|EDT11769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia graminis C4D1M]
Length = 381
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 105/263 (39%), Gaps = 67/263 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSA--------DHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D S+ + +A+GHYA V ++ DH KDQ+YFL L+QAQL + +
Sbjct: 110 LDHAMSLGAETIATGHYARVRENNGRFELLKAFDH-----TKDQSYFLHRLNQAQLSKTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTKVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLPTQPGPMKTTDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT GQ + +GL +V KDI +N ++V++ + H
Sbjct: 225 VVGEHIGLAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTL 284
Query: 132 HAGSLKLLSGLPPEK------ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQ--GL 183
AG+ ++G PP + ++ C+ + + +G + +L+ DD +
Sbjct: 285 SAGNTSWVAGEPPAEGFACGAKTRYRQADARCTFSRANQREG-----LFELTFDDAQWAV 339
Query: 184 AAGQFAAFYQGRRCLGSGVILEA 206
GQ A Y G CLG G+I A
Sbjct: 340 TPGQSAVLYDGDVCLGGGIIEHA 362
>gi|218281120|ref|ZP_03487655.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989]
gi|218217634|gb|EEC91172.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989]
Length = 385
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 102/252 (40%), Gaps = 59/252 (23%)
Query: 9 FDYVASGHYANVVHSSA---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-- 63
FD VA+GHYA+ + + K KDQTYFL + ++++ + IF L + I
Sbjct: 125 FDKVATGHYASNAEENGFTYLTRAKDQNKDQTYFLCQVEKSKIAKTIFPLAHLEKPEIRQ 184
Query: 64 ------------------------------------PMEGIILEAETGDFLEKHRGFWFY 87
+G I++ T + +H G +Y
Sbjct: 185 IAAELNLESVATKKDSTGICFIGERNFRQFLSNYLPSKDGDIVDVNTSKVIARHVGVLYY 244
Query: 88 TIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS---------LK 137
TIGQ + L + + +VV KD+ NI++V R +R L ++ S L
Sbjct: 245 TIGQRKGLNIDHEKGPWFVVGKDVVKNILYVCRT-----DQRDLLYSDSCIVKGINWILP 299
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
L +P + + + + IE +D +V+ + + GQ A FY G +C
Sbjct: 300 SLEEIPTKCTCKFRYRQKDQDIEIERLDDTS---VLVKYPQTIASVTEGQEAVFYDGDKC 356
Query: 198 LGSGVILEAWDD 209
+G GVI E + D
Sbjct: 357 IGGGVIEEVFKD 368
>gi|423071780|ref|ZP_17060553.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus intermedius
F0413]
gi|355363554|gb|EHG11291.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus intermedius
F0413]
Length = 373
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 103/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDEDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R F Q
Sbjct: 173 NLEKPEVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTFEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQNGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D A V +E + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKATVNFAELQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGEECLGGGLIDNAY 364
>gi|427400356|ref|ZP_18891594.1| tRNA-specific 2-thiouridylase mnmA [Massilia timonae CCUG 45783]
gi|425720630|gb|EKU83549.1| tRNA-specific 2-thiouridylase mnmA [Massilia timonae CCUG 45783]
Length = 370
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 100/254 (39%), Gaps = 51/254 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDK-----PSVKDQTYFLSHLSQAQLRRLIFHL 55
+D + D +A+GHYA V ++ K + + KDQ+YFL L+QAQL + +F L
Sbjct: 110 LDHAMKLGADLIATGHYARVRQNTGSGKFELLKAFDATKDQSYFLHRLNQAQLSKSLFPL 169
Query: 56 VLYPR---------LTIP------MEGI--ILEAETGDFLEK------------------ 80
P+ L +P GI I E DFL +
Sbjct: 170 GEIPKTEVRKIAEKLKLPNAAKKDSTGICFIGERPFRDFLNRYLSYKPGPIRLDDGTKVG 229
Query: 81 -HRGFWFYTIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFDKKRH 129
H G FYT+GQ + +G+ + R +V KDIE N +++ + + +
Sbjct: 230 EHVGLSFYTLGQRKGIGIGGLKSRKNADGTSEPWFVARKDIEANTLYIVQGHDHPWLLSN 289
Query: 130 LFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
AG ++G P Y + G+ V+ S+ + GQ A
Sbjct: 290 RLEAGQASWIAGEAPAPRELSAKTRYRQADVACRVLAEGDSRFVLDFSDPQWAVTPGQSA 349
Query: 190 AFYQGRRCLGSGVI 203
Y G CLG G+I
Sbjct: 350 VLYDGDVCLGGGII 363
>gi|422847856|ref|ZP_16894539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK72]
gi|325686453|gb|EGD28482.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK72]
Length = 373
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 101/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E G +L G G+ Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|227512195|ref|ZP_03942244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus buchneri ATCC 11577]
gi|227084589|gb|EEI19901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus buchneri ATCC 11577]
Length = 374
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 104/255 (40%), Gaps = 50/255 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DY+A+GHYA + H + KDQTYFLS LS QL R++F +
Sbjct: 113 LDYALELGADYIATGHYAQLTRDEDGHNHLLRASDGNKDQTYFLSQLSANQLDRVMFPIG 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
++ P + +P + G+ +
Sbjct: 173 NLVKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLPATPGKMMTVDGEVKGQ 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ + +V+ KD++ NI++V + Y++ A +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDI 292
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ L + + F + +T+ H D G+ + V + + GQ FY
Sbjct: 293 HWVNNLDRGQDFHCTAKFRYRQKDTGVTV-HLSDDGQKVRV-DFDAPVRAITPGQAVVFY 350
Query: 193 QGRRCLGSGVILEAW 207
G CLGS +I A+
Sbjct: 351 DGEECLGSAIIDAAY 365
>gi|384208325|ref|YP_005594045.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira intermedia PWS/A]
gi|343385975|gb|AEM21465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira intermedia PWS/A]
Length = 352
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 36/154 (23%)
Query: 7 MEFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHL------ 55
+EFD A+GHYA V + + K +KDQ+YFL L+Q QL +++F +
Sbjct: 122 LEFDKFATGHYAGVKYDEKTKRYLLLRGKNLIKDQSYFLYRLTQDQLSKIMFPMHENTKE 181
Query: 56 ------------------------VLYPRL-TIPMEGIILEAETGDFLEKHRGFWFYTIG 90
Y RL EG I+ +T + L H+G W YT+G
Sbjct: 182 DTRNIAREYNLDVAEKSESQDFFAGEYHRLFDEDKEGNIINIDTNEILGHHKGIWHYTVG 241
Query: 91 QHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSF 124
Q + LG+ Y ++V D E N V+V ++F
Sbjct: 242 QRKGLGIAYKDPLFIVSLDSETNTVYVGNKNHTF 275
>gi|228902924|ref|ZP_04067065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis IBL 4222]
gi|228967471|ref|ZP_04128500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228792248|gb|EEM39821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228856708|gb|EEN01227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis IBL 4222]
Length = 376
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 55/246 (22%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ L+ + G K+ +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHN----ELLYGDEVIATNVGWVSNKVKE 303
Query: 150 LHSVFYNCSLTIEHCEDGG--------EDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ C+ + ++ E+ + E + + GQ FY G CLG
Sbjct: 304 TE---FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDGDECLGGA 360
Query: 202 VILEAW 207
I E +
Sbjct: 361 TIDEVY 366
>gi|229186636|ref|ZP_04313797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BGSC 6E1]
gi|228596895|gb|EEK54554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BGSC 6E1]
Length = 376
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYGGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|403070218|ref|ZP_10911550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
[Oceanobacillus sp. Ndiop]
Length = 370
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 47/249 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
+D S+ DY+A+GHYA V + + V KDQTYFL+ LS L++++F L
Sbjct: 113 LDHAMSLGADYLATGHYAQVKETDGRIEMLRGVDDNKDQTYFLNQLSADVLKQVMFPLGH 172
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
P+ + P + ++ G + +H
Sbjct: 173 MPKSEVRRIAKEHGLVTADKKDSTGICFIGERNFKEFLSEYLPAQPGEMQTLDGAVMGRH 232
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YTIGQ Q LG+ +VV K++++NI++V + + + A L ++
Sbjct: 233 DGLMYYTIGQRQGLGIGGSGDPWFVVGKNLKDNILYVEQGFSNEKLYSDALVATDLNWIN 292
Query: 141 G-LPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+ E+ S Y + +T+ DG A V+ ++ + GQ FY G
Sbjct: 293 ADVITERFSCTAKFRYRQKDSQVTVSIQSDGK---AFVEFDSRERAITPGQAVVFYDGEV 349
Query: 197 CLGSGVILE 205
CLG G I E
Sbjct: 350 CLGGGTIDE 358
>gi|258646059|ref|ZP_05733528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dialister invisus DSM 15470]
gi|260403430|gb|EEW96977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dialister invisus DSM 15470]
Length = 350
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 98/246 (39%), Gaps = 60/246 (24%)
Query: 11 YVASGHYANVVHSSADHK---DKPS--VKDQTYFLSHLSQAQLRRLIFHL-VLYPRLT-- 62
Y A+GHYA + + K +K + KDQ+Y + HL+Q QL ++F L +Y + T
Sbjct: 112 YFATGHYARITYDGTRRKYQVEKATDLAKDQSYMMYHLTQDQLAHILFPLGRIYKKDTRR 171
Query: 63 ------IPM-------------------------------EGIILEAETGDFLEKHRGFW 85
+P G I + + G L H+G
Sbjct: 172 ISEEKGLPTYNKAESQDICFLTSEKSYAEFLQNHAPEAFRPGNITDTK-GRILGTHKGLP 230
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
FYTIGQ + LG+ YVV N V V N F R A L G PP
Sbjct: 231 FYTIGQRKGLGIASRTPLYVVSLHAGKNRVIVGSNDDLF---RSGLLANELDFTDGAPPS 287
Query: 146 KISQLHSVF------YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
+ + + +NC++T+++ A V+ E + + GQ FY+ R LG
Sbjct: 288 QQFRCRAKIRYGIHVHNCTVTLDN-----HGRAAVKFDEPQRAITPGQSVVFYEENRLLG 342
Query: 200 SGVILE 205
G I++
Sbjct: 343 GGTIMK 348
>gi|229135219|ref|ZP_04264018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST196]
gi|228648261|gb|EEL04297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST196]
Length = 376
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 ATEAGLATAAKKDSTGICFIGERNFKGFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEKEFT 307
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|75761642|ref|ZP_00741591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|74490863|gb|EAO54130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar israelensis ATCC 35646]
Length = 269
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 55/246 (22%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 21 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 80
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 81 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 140
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ L+ + G K+ +
Sbjct: 141 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHN----ELLYGDEVIATNVGWVSNKVKE 196
Query: 150 LHSVFYNCSLTIEHCEDGG--------EDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ C+ + ++ E+ + E + + GQ FY G CLG
Sbjct: 197 TE---FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDGDECLGGA 253
Query: 202 VILEAW 207
I E +
Sbjct: 254 TIDEVY 259
>gi|423612598|ref|ZP_17588459.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD107]
gi|401246187|gb|EJR52539.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD107]
Length = 371
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEKEFT 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|423558025|ref|ZP_17534327.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MC67]
gi|401191293|gb|EJQ98315.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus MC67]
Length = 371
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEKEFT 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|257066076|ref|YP_003152332.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Anaerococcus prevotii DSM 20548]
gi|256797956|gb|ACV28611.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Anaerococcus prevotii DSM 20548]
Length = 372
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 112/261 (42%), Gaps = 64/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D S+ DYVA+GHYA V S + + S KDQTYFLS LSQ Q++ ++F +
Sbjct: 113 LDFAKSLGADYVATGHYARVDRSGDETVMLRGLDSNKDQTYFLSQLSQEQIKDVLFPVGE 172
Query: 58 YPRLTI---------------PMEGII--------------LEAETGDFLE-------KH 81
+ + GI L A+ GD ++ KH
Sbjct: 173 LQKSEVREIAHKYKLATADKKDSTGICFIGERDFNEFLSNYLPAQAGDIVDTDGNVLGKH 232
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL--KL 138
G F+TIGQ + LG+ +V KD++ N + V + K L + L
Sbjct: 233 DGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKKNELIVCQG-----KNNPLLFSNKLYASE 287
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDI-AVVQLSED---------DQGLAAGQF 188
S +KI + ++C+ + + DI A V++ ED + + GQ
Sbjct: 288 FSTFTEKKIPKE----FDCTAKFRYRQ---ADIKAHVKVLEDGKVEVTYDRTKAVTPGQA 340
Query: 189 AAFYQGRRCLGSGVILEAWDD 209
A FYQG C+GS +I E ++D
Sbjct: 341 AVFYQGEVCIGSAIIDEVYND 361
>gi|163942146|ref|YP_001647030.1| tRNA-specific 2-thiouridylase MnmA [Bacillus weihenstephanensis
KBAB4]
gi|423368442|ref|ZP_17345874.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD142]
gi|423489575|ref|ZP_17466257.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BtB2-4]
gi|423495298|ref|ZP_17471942.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus CER057]
gi|423497908|ref|ZP_17474525.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus CER074]
gi|423512507|ref|ZP_17489038.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA2-1]
gi|423519093|ref|ZP_17495574.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA2-4]
gi|423591612|ref|ZP_17567643.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD048]
gi|423598293|ref|ZP_17574293.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD078]
gi|423660764|ref|ZP_17635933.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM022]
gi|423669977|ref|ZP_17645006.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM034]
gi|423673819|ref|ZP_17648758.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM062]
gi|205812536|sp|A9VIM2.1|MNMA_BACWK RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|163864343|gb|ABY45402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus weihenstephanensis KBAB4]
gi|401080769|gb|EJP89053.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD142]
gi|401151391|gb|EJQ58843.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus CER057]
gi|401160148|gb|EJQ67527.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA2-4]
gi|401161195|gb|EJQ68562.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus CER074]
gi|401231745|gb|EJR38247.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD048]
gi|401236563|gb|EJR43020.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD078]
gi|401299104|gb|EJS04704.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM034]
gi|401300805|gb|EJS06394.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM022]
gi|401310185|gb|EJS15510.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VDM062]
gi|402431811|gb|EJV63875.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BtB2-4]
gi|402449478|gb|EJV81315.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA2-1]
Length = 371
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEKEFT 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|407803326|ref|ZP_11150162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alcanivorax sp. W11-5]
gi|407022695|gb|EKE34446.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alcanivorax sp. W11-5]
Length = 369
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 96/249 (38%), Gaps = 47/249 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL-- 55
+D ++ D +A+GHYA HS A + +V KDQTYFL + Q R +F L
Sbjct: 118 LDHALTLGADGIATGHYAQANHSVAPAELLRAVDTNKDQTYFLHAVGGEQFSRTLFPLGH 177
Query: 56 VLYPRLT----------------------------------IPMEGIILEAETGDFLEKH 81
+ P + +P + ++E + G + +H
Sbjct: 178 IAKPEVRRIAAECGFANHKKKDSTGICFIGERRFKDFLQRYLPAQPGVIEDDHGHRIGEH 237
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +YT+GQ Q LG+ YV KD+ N++ + + +G +
Sbjct: 238 SGLMYYTLGQRQGLGIGGRADADESPWYVAAKDLTRNVLIAVQGHDHPLLHSRRLDSGPV 297
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHC--EDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
+SG PP + L + +HC E + V + + GQ FY G
Sbjct: 298 HWISGAPPAMPATL-TAKTRYRQPDQHCTLEPLADGRVRVHFDTPQRAVTPGQSVVFYDG 356
Query: 195 RRCLGSGVI 203
RCLG VI
Sbjct: 357 PRCLGGAVI 365
>gi|116283770|gb|AAH27991.1| TRMU protein [Homo sapiens]
Length = 267
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 85 PRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFVAPRTDH 143
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 144 PALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 201
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
VQ + LA GQFA FY+G CLGSG IL
Sbjct: 202 AVQAV---RALATGQFAVFYKGDECLGSGKILR 231
>gi|387813961|ref|YP_005429444.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381338974|emb|CCG95021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 378
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 64/270 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A+GHY D K + KDQ+YFL +S ++ R +F
Sbjct: 105 LDYAVTLGADYIATGHYTRQ-RPLNDGSGKAQLLKGLDPNKDQSYFLHAVSGQRIARTLF 163
Query: 54 ------------------------------------HLVLYPRLTIPMEGIILEAETGDF 77
+ + +P + +E G
Sbjct: 164 PVGELEKPEVRRIAEEQGFVTHDKKDSTGICFIGERKFTDFLKQYLPAQPGNIETPDGTV 223
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVY-----RYVVEKDIENNIVF-VSRNYYSFDKKRHLF 131
+ KH+G ++TIGQ Q LG+ + YV EKD+ N++ V ++ R L
Sbjct: 224 IGKHQGLMYHTIGQRQGLGIGGLAEFGDDPWYVAEKDLNRNVLIAVQGKHHPLLFSRGLV 283
Query: 132 HAGSLKLLSGLPPEKI------SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAA 185
+G + ++G PP + ++ +C +T+ DGG V + + +
Sbjct: 284 -SGPVDWVAGEPPAQKFRCKAKTRYRQPDQDCEVTVI---DGG---VKVIFDDAQRAVTP 336
Query: 186 GQFAAFYQGRRCLGSGVILEAW-DDQGFPV 214
GQ FYQG CLG GVI + W D++ P
Sbjct: 337 GQSVVFYQGEVCLGGGVIEQTWRDNEALPA 366
>gi|229013614|ref|ZP_04170745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides DSM 2048]
gi|229062091|ref|ZP_04199416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH603]
gi|229169139|ref|ZP_04296854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH621]
gi|228614367|gb|EEK71477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH621]
gi|228717243|gb|EEL68918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH603]
gi|228747673|gb|EEL97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus mycoides DSM 2048]
Length = 376
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEKEFT 307
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|15613824|ref|NP_242127.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
halodurans C-125]
gi|14195281|sp|Q9KDF2.1|MNMA_BACHD RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|10173877|dbj|BAB04980.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus
halodurans C-125]
Length = 371
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 49/243 (20%)
Query: 6 SMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
++ DYVA+GHYA V + + + K KDQTYFL+ LSQ QL R++F L
Sbjct: 120 TLGADYVATGHYAQVKNVDGQYQLIRGKDPNKDQTYFLNALSQQQLSRVMFPLGHLEKKE 179
Query: 56 --VLYPRLT---------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ R +P + ++ G+ H G +
Sbjct: 180 VRAIAERAGLATAKKKDSTGICFIGKRDFKEFLSSYLPAQPGEMQTLDGEVKGTHDGLMY 239
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLS 140
YT+GQ Q LG+ +V+ K++E NI++V + + YS + R + L+ S
Sbjct: 240 YTLGQRQGLGIGGSGEPWFVIGKNLEKNILYVGQGFHHPGLYS-EGLRAIKVNWILRRES 298
Query: 141 GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
P E ++ + +T+ DG + V +E + + GQ FY G CLG
Sbjct: 299 DEPFECTAKFRYRQPDQKVTVYPQSDGAVE---VLFAEPQRAITPGQAVVFYDGDVCLGG 355
Query: 201 GVI 203
G I
Sbjct: 356 GTI 358
>gi|365157974|ref|ZP_09354217.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacillus smithii 7_3_47FAA]
gi|363622153|gb|EHL73324.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacillus smithii 7_3_47FAA]
Length = 371
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 47/247 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D ++ DYVA+GHYA V + K K S KDQTYFL+ L Q QL +++F +
Sbjct: 114 LDHAMNLGADYVATGHYAQVEERGGEVKLLRGKDSNKDQTYFLNQLQQFQLEKVMFPIGH 173
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
+ + P + +E G + +H
Sbjct: 174 LEKKQVREIAQEAGLATAKKKDSTGICFIGERNFKEFLSQYLPAQPGKMETLDGKVMGEH 233
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YTIGQ LG+ +VV KD++ N+++V + +++ A ++ +S
Sbjct: 234 DGLMYYTIGQRHGLGIGGSGEPWFVVGKDVKRNVLYVGQGFHNDALYSDSIIATNVGWVS 293
Query: 141 GL-PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
P++ + Y + + ++ +G A V E + + GQ FY G
Sbjct: 294 DREKPQQFTCTAKFRYRQPDTKVIVQLLSNG---RASVVFDEPVRAVTPGQAVVFYNGEE 350
Query: 197 CLGSGVI 203
CLG G I
Sbjct: 351 CLGGGTI 357
>gi|384227697|ref|YP_005619442.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538637|gb|AEO08614.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 370
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 105/250 (42%), Gaps = 53/250 (21%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---HL- 55
+I ++ DY+A+GHYA + + + K KDQ+YFL L++ QL+R++F HL
Sbjct: 116 SIQELQADYIATGHYARIKKINEKYLLLKGTDLNKDQSYFLYTLNKIQLKRILFPIGHLK 175
Query: 56 -------------------------VLYPRLTIPMEGIILEAETGDFLE-------KHRG 83
+ P+ + L GD + KH G
Sbjct: 176 KKQVRNIARKIDLKNSEKKDSTGICFIGPKKLKNFLSLYLPENKGDIVTIAGQVVGKHNG 235
Query: 84 FWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-K 137
+FYT+GQ Q LG+ Y + YVVEK+I+ NI+ V++ Y+ R+L G + K
Sbjct: 236 IFFYTLGQRQGLGIGGIKGEYNIPWYVVEKNIKKNILIVAQGSYN----RYLMSVGLIAK 291
Query: 138 LLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
++ + +++S S Y I E + + GQ FY
Sbjct: 292 NVNWINSDQLSFPFSCMAKTRYRQKDIICKIEYINNKFIRILFDLPVIAVTPGQSIVFYL 351
Query: 194 GRRCLGSGVI 203
C+G G+I
Sbjct: 352 SEICIGGGII 361
>gi|119593831|gb|EAW73425.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform
CRA_d [Homo sapiens]
Length = 203
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 21 PRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFVAPRTDH 79
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 80 PALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 137
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
VQ + LA GQFA FY+G CLGSG IL
Sbjct: 138 AVQAV---RALATGQFAVFYKGDECLGSGKILR 167
>gi|320096111|ref|ZP_08027710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
partial [Actinomyces sp. oral taxon 178 str. F0338]
gi|319976950|gb|EFW08694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Actinomyces sp. oral taxon 178 str. F0338]
Length = 515
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 102/255 (40%), Gaps = 57/255 (22%)
Query: 2 DAISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLY 58
D ++ FD V +GHYA +V H+ + KDQ+Y L+ + +LRR++ L
Sbjct: 253 DRARALGFDAVCTGHYAAIVEGEQGPELHRGADAAKDQSYVLAVMGPDELRRVVLPLGGA 312
Query: 59 P----------RLT--------------IP--------------MEGIILEAETGDFLEK 80
P RL IP EG I+ + G L +
Sbjct: 313 PSKAWVRAEAERLGLGVSDKPDSYDICFIPDGDTQGFLRAHLGSAEGEIVTPD-GRVLGR 371
Query: 81 HRGFWFYTIGQHQELGLLYIV----YRYVVEKDIENNIVFV-SRNYYSFDKKRHLFHAGS 135
H G+W YT+GQ + LG+ RYV+E E N V V + + D+ + + +
Sbjct: 372 HGGYWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLTVDR---IECSDA 428
Query: 136 LKLLSGLPPEKIS-------QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
+ L P + S + H + + G VV L+E +G+A GQ
Sbjct: 429 VWLAPDDPGDAASGGLYAQFRAHGRPLPVASLVRRAPGGAGARFVVGLAEGARGVARGQS 488
Query: 189 AAFYQGRRCLGSGVI 203
Y+G R LG G I
Sbjct: 489 LVVYRGDRVLGEGTI 503
>gi|381210448|ref|ZP_09917519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
[Lentibacillus sp. Grbi]
Length = 369
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 46/241 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---HLVLYP 59
S+ DY+A+GHYA V + ++ + KDQTYFL+ LS L +++F HL
Sbjct: 118 SLGADYLATGHYAQVRENDGKYEMLRGIDDNKDQTYFLNQLSHDVLEKVMFPLGHLDKRE 177
Query: 60 RLTIPMEGIILEAETGD--------------FLE-------------------KHRGFWF 86
I E ++ A D FL +H G +
Sbjct: 178 VREIAKEHDLVTASKKDSTGICFIGERNFKEFLSEYLPAQPGQMKTLDGKEKGRHDGLMY 237
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ Q LG+ +VV K+++ NI++V + + + A + ++ +P E
Sbjct: 238 YTIGQRQGLGIGGSGEPWFVVGKNLDENILYVDQGFDNDKLYSDGLIASDVNWINNIPDE 297
Query: 146 KISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
S Y + ++T+ E+G V+ +E + + GQ FY CLG G
Sbjct: 298 SFSCTAKFRYRQKDSAVTVTKMENGK---VHVEFAEKQRAITPGQAVVFYNSEVCLGGGT 354
Query: 203 I 203
I
Sbjct: 355 I 355
>gi|337282939|ref|YP_004622410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis ATCC 15912]
gi|335370532|gb|AEH56482.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis ATCC 15912]
Length = 373
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME---------------------------GIILEAETGDFLE-------K 80
+ P + E G L A+ G + +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTIDGRDMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y +
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQSSQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTVKVKGDKAE----VIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G+ CLG G+I +A+ D
Sbjct: 349 YDGQECLGGGIIDQAYKD 366
>gi|294155486|ref|YP_003559870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma crocodyli MP145]
gi|291599923|gb|ADE19419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma crocodyli MP145]
Length = 372
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 60/255 (23%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
A + DY+A GHYA V + ++ K KDQTYFL+ +++ QL+++I L
Sbjct: 123 AFDKLGADYIAMGHYAKVENGKL-YRAKDENKDQTYFLAQVTEEQLKKVIMPLYDLQKSQ 181
Query: 56 -----------------------------VLYPRLTIP-MEGIILEAETGDFLEKHRGFW 85
+ + IP EG I++ T + KH G +
Sbjct: 182 IRKLAADLNLSTANKKDSTGICFIGERNFTSFLQNYIPAQEGDIVDITTNKKVAKHVGCF 241
Query: 86 FYTIGQHQELGL-LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
+YTIGQ + L L ++ YV +++ NI++V+ H + S +L++
Sbjct: 242 YYTIGQRKGLNLGGFVEPYYVCGHNVKENILYVA-------PASHPEYLDSNELIAS--- 291
Query: 145 EKISQLHSVFYNCSLTIE----------HCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
++ H F N ++T++ + E + + E Q + GQ Y G
Sbjct: 292 -NLTLNHKEFNNDNITVKFRYRQKDIKANIEILDNNFIKIYYPEKSQAVTPGQQVVLYDG 350
Query: 195 RRCLGSGVILEAWDD 209
+CLG VI E + D
Sbjct: 351 EKCLGGAVIEEVFLD 365
>gi|344169271|emb|CCA81598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [blood
disease bacterium R229]
Length = 370
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 101/258 (39%), Gaps = 65/258 (25%)
Query: 1 MDAISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ D +A+GHYA V + + DH KDQ+YFL L+QAQL R +
Sbjct: 110 LDHAMALGADTIATGHYARVREVDGRFELLKAFDH-----TKDQSYFLHRLNQAQLCRTL 164
Query: 53 FHLVLYPRLTI------------------------------------PMEGIILEAETGD 76
F L P+ + P + ++ G
Sbjct: 165 FPLGEIPKTRVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPIKTPDGK 224
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
+ +H G FYT+GQ + +G+ YV KD+ N ++V + + H
Sbjct: 225 TIGQHIGLAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTV 284
Query: 132 HAGSLKLLSGLPPEKISQLHS------VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAA 185
HA L ++G PP + +QL + C++T GG + + +
Sbjct: 285 HADDLSWVAGHPPAEGTQLAAKTRYRQTDAPCAVTRAA---GGA--LTLTFPQAQWAVTP 339
Query: 186 GQFAAFYQGRRCLGSGVI 203
GQ A Y G CLG G+I
Sbjct: 340 GQSAVLYDGDVCLGGGII 357
>gi|384182215|ref|YP_005567977.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324328299|gb|ADY23559.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 371
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 302
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQEDNKVTVQIVD---ENTVHILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|239828143|ref|YP_002950767.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70]
gi|239808436|gb|ACS25501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus sp. WCH70]
Length = 370
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 61/257 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSS---ADHKDKPSVKDQTYFLSHLSQAQLRRLIF---- 53
+D S++ DY+A+GHYA + + A + K KDQTYFLS L+ L +++F
Sbjct: 110 VDYALSLDADYIATGHYARISRENGQIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGE 169
Query: 54 --------------------------------HLVLYPRLTIPMEGIILEAETGDFLEKH 81
+ + + +P + + + G+ L H
Sbjct: 170 LTKDEVRKIAQELNLVNANKKDSTGICFIGERNFKNFLKNYLPAQPGEIRSLDGEVLGTH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRH--LFHAG-- 134
G +YTIGQ + LG+ YVV+KD+ENN++ V++ K H LF G
Sbjct: 230 DGLMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQG------KNHPALFSTGLI 283
Query: 135 --SLKLLSG-LPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
++ ++G + P + Y + +T+ H G A V+ + + + GQ
Sbjct: 284 ASNISFINGDVRPRTFACTAKFRYRQEDQKVTV-HIRPNG--TAFVEFEKPVKAVTPGQV 340
Query: 189 AAFYQGRRCLGSGVILE 205
A FY CLGS +I E
Sbjct: 341 AVFYDNDVCLGSAIIDE 357
>gi|379723670|ref|YP_005315801.1| protein MnmA [Paenibacillus mucilaginosus 3016]
gi|386726419|ref|YP_006192745.1| protein MnmA [Paenibacillus mucilaginosus K02]
gi|378572342|gb|AFC32652.1| MnmA [Paenibacillus mucilaginosus 3016]
gi|384093544|gb|AFH64980.1| protein MnmA [Paenibacillus mucilaginosus K02]
Length = 383
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 101/244 (41%), Gaps = 57/244 (23%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPM- 65
DY+A+GHYA V H+ H+ V KDQTYFL+ L+Q QL + +F + P+ +
Sbjct: 120 DYIATGHYARVEHTDGKHRLLRGVDGNKDQTYFLNALNQYQLSKAMFPIGHLPKPEVRAI 179
Query: 66 --------------EGII--------------LEAETGDF--LE-----KHRGFWFYTIG 90
G+ L A+ GD LE +H G +YT+G
Sbjct: 180 AEKAGLATAKKKDSTGVCFIGERNFKEFLSGYLPAKPGDMRTLEGEVKGRHDGLMYYTLG 239
Query: 91 QHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAG----SLKLLSGLP 143
Q LG+ +V KD+E NI++V + +K L+ G L +SG
Sbjct: 240 QRSGLGIGGSGSGEPWFVAGKDLERNILYVVQG----EKHPALYTKGLLATDLNWISGET 295
Query: 144 PEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P + + F + +T+ DG A V + + + GQ FY G CLG
Sbjct: 296 PAAPLRCTAKFRYRQPDQGVTLTFGPDG---TAEVVFDQPQKAITPGQAVVFYDGEECLG 352
Query: 200 SGVI 203
I
Sbjct: 353 GATI 356
>gi|345023320|ref|ZP_08786933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
[Ornithinibacillus scapharcae TW25]
Length = 370
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 103/250 (41%), Gaps = 53/250 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D + DY+A+GHYA V ++ + + S KDQTYFL+ L+ L +++F L
Sbjct: 113 LDYAMDLGADYLATGHYAQVRENNGKYEMLRGVDSNKDQTYFLNQLTSDILEKVMFPLGH 172
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
P+ + P + ++ G+ KH
Sbjct: 173 MPKSKVREIAKEHGLATATKKDSTGICFIGERNFKEFLSEYLPAQPGEMQTLNGEVKGKH 232
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YTIGQ Q LG+ +VV K+++ NI++V + Y + A L ++
Sbjct: 233 DGLMYYTIGQRQGLGIGGAGDPWFVVGKNLKENILYVEQGYSNETLYSEELIATDLNWIN 292
Query: 141 GLPPEKISQLHSVFY-------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
P+ I++ + + +T++ +DG V E + + GQ FY
Sbjct: 293 ---PQDITESFTCTAKFRYRQDDSGVTVKLQDDG---TVRVIFDERQRAITPGQAVVFYD 346
Query: 194 GRRCLGSGVI 203
G CLG G I
Sbjct: 347 GDVCLGGGTI 356
>gi|399018736|ref|ZP_10720906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Herbaspirillum sp. CF444]
gi|398100560|gb|EJL90798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Herbaspirillum sp. CF444]
Length = 364
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 98/245 (40%), Gaps = 53/245 (21%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL---------V 56
D +A+GHYA V + K + KDQ+YFL L+QAQL + +F L
Sbjct: 119 DLIATGHYARVRENPVGKFELMKAVDASKDQSYFLHRLNQAQLSKTLFPLGEIHKTEVRK 178
Query: 57 LYPRLTIP------MEGIILEAET---------------------GDFLEKHRGFWFYTI 89
+ +L +P GI E GD + +H G FYT+
Sbjct: 179 IAEQLKLPNATKKDSTGICFIGERPFREFLNRYLSYKPGPMKTPEGDIVGEHVGLSFYTL 238
Query: 90 GQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
GQ + +GL I YV KD+ENN +++ + + A + +
Sbjct: 239 GQRKGIGLGGIKAHQNADGNSDAWYVARKDVENNTLYIVQGHDHPWLLSSRLGASQISWV 298
Query: 140 SGLPPEKIS-QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
+G P+ + + + + +DG ++ S+ + GQ A YQG CL
Sbjct: 299 AGEAPDMAALSAKTRYRQADVPCTFNDDGAR--FDLRFSDPQWAVTPGQSAVLYQGDVCL 356
Query: 199 GSGVI 203
G G+I
Sbjct: 357 GGGII 361
>gi|381182877|ref|ZP_09891657.1| tRNA-specific 2-thiouridylase MnmA [Listeriaceae bacterium TTU
M1-001]
gi|380317233|gb|EIA20572.1| tRNA-specific 2-thiouridylase MnmA [Listeriaceae bacterium TTU
M1-001]
Length = 372
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 99/253 (39%), Gaps = 61/253 (24%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA + + + K V KDQTYFL+ LS+ QL ++F L +
Sbjct: 120 SLGADYVATGHYARIRRENGEIKLLRGVDRNKDQTYFLNQLSEEQLSHVMFPLGEMEKSE 179
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + ++ TG + KH G +
Sbjct: 180 VRAIAQKAGLATANKKDSTGICFIGERNFKQFLSEYLPAKPGEMKTLTGKKIGKHDGLMY 239
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ L+ +
Sbjct: 240 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHH----DSLYSNSLVATDVSFTSN 295
Query: 146 KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD-----------QGLAAGQFAAFYQG 194
K+ + H + C+ + + ED AV DD + + GQ FY G
Sbjct: 296 KVREKH---FTCTAKFRYRQ---EDSAVTVHLRDDHTAEVVFDAPVRAITPGQAVVFYDG 349
Query: 195 RRCLGSGVILEAW 207
C+G I W
Sbjct: 350 EECIGGATIDTVW 362
>gi|218961454|ref|YP_001741229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Cloacamonas acidaminovorans]
gi|167730111|emb|CAO81023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 382
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 83/193 (43%), Gaps = 50/193 (25%)
Query: 7 MEFDYVASGHYA-----NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRL 61
+EFDY A+GHYA N + K K + KDQ+YFL+ LSQ QL + +F L Y +
Sbjct: 127 LEFDYFATGHYAKIGFNNTLKRYQIRKAKDANKDQSYFLAFLSQEQLAQTLFPLGDYTKQ 186
Query: 62 TIPMEGI-------ILEAETGDFLE---------------------------KHRGFWFY 87
I I + E+ DFL+ KH+G Y
Sbjct: 187 EIKKMAIGKGFTELVERKESQDFLQSSDLEVLFKPEDFNPGEIIDMQGKVIGKHKGIINY 246
Query: 88 TIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE- 145
TIGQ + LG+ + YV++ D ENN + + Y F KK A + +S PE
Sbjct: 247 TIGQRRNLGISGMPEPYYVLQIDAENNRIVLGPKEYLFKKK---CSATDMNWVSLPAPEK 303
Query: 146 ------KISQLHS 152
KI Q HS
Sbjct: 304 KFRAKAKIRQQHS 316
>gi|295396917|ref|ZP_06807041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Aerococcus viridans ATCC 11563]
gi|294974851|gb|EFG50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Aerococcus viridans ATCC 11563]
Length = 378
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 100/250 (40%), Gaps = 59/250 (23%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPRLT- 62
DYVA+GHYA V + + + KDQTYFL+ LSQ QL+R++F L + P +
Sbjct: 125 DYVATGHYAQVERDAKGKVHMLRGLDNNKDQTYFLNQLSQDQLQRVMFPLGHLEKPEVRR 184
Query: 63 ---------------------------------IPMEGIILEAETGDFLEKHRGFWFYTI 89
+P + + AE G + H G +YTI
Sbjct: 185 IAEEAGLATAKKKDSTGICFIGEKNFKEFLGNFLPAQPGKMIAEDGTVMGDHMGLMYYTI 244
Query: 90 GQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
GQ + LG+ +VV KD N+++V + +++ A L +
Sbjct: 245 GQRKGLGIGGGGESDQPWFVVGKDQAKNVLYVGQGFHNDKLYADYLMASDLSFVD----- 299
Query: 146 KISQLHSVFYNCSL--------TIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
+ + ++C+ T H + + A + +E + + GQ FY G C
Sbjct: 300 --DEFTATSFDCTAKFRYRQKDTQVHVDINEDGTAKITFAEPVRAITPGQAVVFYDGPEC 357
Query: 198 LGSGVILEAW 207
LG G I A+
Sbjct: 358 LGGGTIDAAF 367
>gi|423395309|ref|ZP_17372510.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-1]
gi|423406184|ref|ZP_17383333.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-3]
gi|401654720|gb|EJS72259.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-1]
gi|401660178|gb|EJS77660.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG2X1-3]
Length = 371
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K++++NI++V + +++ A ++ +S E +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKDNILYVDQGFHNELLYGDEVIATNVGWVSNKAKETEFK 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|334882309|emb|CCB83304.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus pentosus MP-10]
gi|339639134|emb|CCC18360.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus pentosus IG1]
Length = 374
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 104/258 (40%), Gaps = 50/258 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D + DY+A+GHYA + H + S KDQTYFLS L L++++F
Sbjct: 113 LDYAMDLGADYIATGHYARLQHDEDGTMHLLRGVDSNKDQTYFLSQLDSKTLQKVMFPLG 172
Query: 54 --------HLVLYPRLTIPME------------------GIILEAETGDFLE-------K 80
L L L + G L A G + +
Sbjct: 173 EMIKPDVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLPATPGKMMTFDGQVKGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ +V+ KD++ NI++V + Y++ A L
Sbjct: 233 HAGLMYYTIGQRRGLGIGGDGEDNEPWFVIGKDLKQNILYVGKGYHNPHLYATHLKASDL 292
Query: 137 KLLS----GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ G ++ + +T+ +D E V E + + GQ FY
Sbjct: 293 HFVTDEDLGNDFHVTAKFRYRQKDSGVTVHFNDDHTE--VTVTFDEPVRAITPGQAVVFY 350
Query: 193 QGRRCLGSGVILEAWDDQ 210
G CLGSG+I A++D+
Sbjct: 351 NGEECLGSGMIDAAYNDE 368
>gi|194365696|ref|YP_002028306.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia
R551-3]
gi|229487423|sp|B4SIN4.1|MNMA_STRM5 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|194348500|gb|ACF51623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Stenotrophomonas maltophilia R551-3]
Length = 380
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 100/252 (39%), Gaps = 52/252 (20%)
Query: 1 MDAISSMEFDYVASGHYANVV---HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+DA + + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAARELGAERIATGHYARVAQRGHQWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGD 168
Query: 56 ------------VLYP-----------------------RLTIPMEGIILEAETGDFLEK 80
V P R G IL+ G + +
Sbjct: 169 LEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAE 228
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + + +
Sbjct: 229 HPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSTWMLSNRLRSET 288
Query: 136 LKLLSGLPP----EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
++G PP E +Q + T+E +DG +V + + + GQ
Sbjct: 289 AHWIAGAPPARRFECTAQTRYRQPDEPCTVEVLDDGS---VLVTFARPQRAVTPGQSLVL 345
Query: 192 YQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 346 YDGDVCLGGAVI 357
>gi|193212019|ref|YP_001997972.1| tRNA-specific 2-thiouridylase MnmA [Chlorobaculum parvum NCIB 8327]
gi|193085496|gb|ACF10772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlorobaculum parvum NCIB 8327]
Length = 364
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 101/250 (40%), Gaps = 50/250 (20%)
Query: 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLY 58
+A+ + D VA+GHYA + + KDQ+YFL L+QA+L + +F L Y
Sbjct: 109 EAMRLLGADLVATGHYARTERRDGVTRLLKGIDPEKDQSYFLWMLTQAELAKTLFPLGGY 168
Query: 59 PR----------------------------------LTIPMEGIILEAETGDFLEK---- 80
+ LT + G+ G+ +++
Sbjct: 169 TKAEVRELARSFEVHAAEKKESQEICFVPHDDYCAYLTRAIPGLEERVAGGEIVDQSGKV 228
Query: 81 ---HRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK 137
HRG+ FYTIGQ + LG+ YV + D E+N + V D + A ++
Sbjct: 229 IGHHRGYPFYTIGQRRGLGVSTGEPVYVTKIDAEHNRIRVGSKA---DLECRSLIATAMN 285
Query: 138 LLSGL--PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
SG+ P + Y + E G+D A V+ E QG+A GQ FY G
Sbjct: 286 W-SGIATPDAPFETEARIRYRDRQSACMVEPLGDDRARVRFHEPKQGVACGQAVVFYDGD 344
Query: 196 RCLGSGVILE 205
LG G+I E
Sbjct: 345 EVLGGGIIAE 354
>gi|300768828|ref|ZP_07078722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
gi|448821693|ref|YP_007414855.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus plantarum ZJ316]
gi|300493561|gb|EFK28735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum ATCC 14917]
gi|448275190|gb|AGE39709.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus plantarum ZJ316]
Length = 379
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 111/262 (42%), Gaps = 58/262 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D + DY+A+GHYA + H + S KDQTYFLS L L++++F
Sbjct: 118 LDYAMDLGADYIATGHYARLQHDEDGTMHLLRGVDSNKDQTYFLSQLDSKTLQKVMFPLG 177
Query: 54 --------HLVLYPRLTIPME------------------GIILEAETGDFLE-------K 80
L L L + G L A G + +
Sbjct: 178 EMVKPDVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLPATPGKMMTFDGQVKGE 237
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ +VV KD++ NI++V + Y++ HL+ A L
Sbjct: 238 HAGLMYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHN----PHLY-ATHL 292
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGG------EDIAVVQLSEDD--QGLAAGQF 188
K S L L + F+ + +D G +D V ++ DD + + GQ
Sbjct: 293 KA-SDLHFVTDEDLGNDFHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQA 351
Query: 189 AAFYQGRRCLGSGVILEAWDDQ 210
FY G CLGSG+I A++D+
Sbjct: 352 VVFYNGEECLGSGMIDAAYNDE 373
>gi|229098868|ref|ZP_04229804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-29]
gi|229105030|ref|ZP_04235684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-28]
gi|229117893|ref|ZP_04247255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock1-3]
gi|407706923|ref|YP_006830508.1| electron transfer flavoprotein subunit beta [Bacillus thuringiensis
MC28]
gi|228665550|gb|EEL21030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock1-3]
gi|228678407|gb|EEL32630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-28]
gi|228684541|gb|EEL38483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock3-29]
gi|407384608|gb|AFU15109.1| tRNA -methyltransferase [Bacillus thuringiensis MC28]
Length = 376
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K++++NI++V + +++ A ++ +S E +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKDNILYVDQGFHNELLYGDEVIATNVGWVSNKAKETEFK 307
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|254556990|ref|YP_003063407.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus plantarum JDM1]
gi|308180978|ref|YP_003925106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum ST-III]
gi|380032923|ref|YP_004889914.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum WCFS1]
gi|418275719|ref|ZP_12891042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum NC8]
gi|38258513|sp|Q88V96.1|MNMA_LACPL RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|254045917|gb|ACT62710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum JDM1]
gi|308046469|gb|ADN99012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum ST-III]
gi|342242166|emb|CCC79400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum WCFS1]
gi|376009270|gb|EHS82599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus plantarum subsp. plantarum NC8]
Length = 374
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 111/262 (42%), Gaps = 58/262 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D + DY+A+GHYA + H + S KDQTYFLS L L++++F
Sbjct: 113 LDYAMDLGADYIATGHYARLQHDEDGTMHLLRGVDSNKDQTYFLSQLDSKTLQKVMFPLG 172
Query: 54 --------HLVLYPRLTIPME------------------GIILEAETGDFLE-------K 80
L L L + G L A G + +
Sbjct: 173 EMVKPDVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLPATPGKMMTFDGQVKGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ +VV KD++ NI++V + Y++ HL+ A L
Sbjct: 233 HAGLMYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHN----PHLY-ATHL 287
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGG------EDIAVVQLSEDD--QGLAAGQF 188
K S L L + F+ + +D G +D V ++ DD + + GQ
Sbjct: 288 KA-SDLHFVTDEDLGNDFHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQA 346
Query: 189 AAFYQGRRCLGSGVILEAWDDQ 210
FY G CLGSG+I A++D+
Sbjct: 347 VVFYNGEECLGSGMIDAAYNDE 368
>gi|187250509|ref|YP_001874991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Elusimicrobium minutum Pei191]
gi|186970669|gb|ACC97654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Elusimicrobium minutum Pei191]
Length = 354
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 96/239 (40%), Gaps = 53/239 (22%)
Query: 9 FDYVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR--- 60
FD A+GHYA ++ + K KDQTYFL L+Q QL +F L Y +
Sbjct: 124 FDKFATGHYARIIFNEETGRYQLRKALDEAKDQTYFLYRLTQKQLSETLFPLGEYTKKQV 183
Query: 61 LTIPMEGIILEAET----------------------------GDFLEKHRGFWFYTIGQH 92
+ E +L AE G+ L KH G W YTIG+
Sbjct: 184 RALAKEKNLLAAEKADSQDFYCGDYNDILQFSAQPGSIVDKEGNVLGKHDGIWNYTIGKR 243
Query: 93 QELGLLYIVY-RYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE------ 145
+ +G+ YV+E + N+V V D + + A + S P+
Sbjct: 244 KGVGISGAKEPMYVIELLPKQNLVVVGTKK---DLYKDVLTASEINWGSVEEPKEPVKVQ 300
Query: 146 -KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
KI Q+H+ N +LT + A V+ E + AGQ FYQG LG G+I
Sbjct: 301 AKIRQMHTP-SNATLTPLPG-----NRAEVKFDEPQMSITAGQSVVFYQGDIVLGGGII 353
>gi|56419544|ref|YP_146862.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus
HTA426]
gi|448237185|ref|YP_007401243.1| tRNA-specific 2-thiouridylase mnmA 1 [Geobacillus sp. GHH01]
gi|81347762|sp|Q5L186.1|MNMA1_GEOKA RecName: Full=tRNA-specific 2-thiouridylase MnmA 1
gi|56379386|dbj|BAD75294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Geobacillus kaustophilus HTA426]
gi|445206027|gb|AGE21492.1| tRNA-specific 2-thiouridylase mnmA 1 [Geobacillus sp. GHH01]
Length = 370
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 110/257 (42%), Gaps = 61/257 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSS---ADHKDKPSVKDQTYFLSHLSQAQLRRLIF---- 53
+D S++ DY+A+GHYA + + A + K KDQTYFLS L+ L +++F
Sbjct: 110 VDYALSLDADYIATGHYARINRENGQIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGE 169
Query: 54 --------------------------------HLVLYPRLTIPMEGIILEAETGDFLEKH 81
+ + + +P + + + G+ L H
Sbjct: 170 LTKDEVRKIAQELNLVNANKKDSTGICFIGERNFKNFLKNYLPAQPGEIRSLDGEVLGTH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRH--LFHAG-- 134
G +YTIGQ + LG+ YVV+KD+ENN++ V++ K H LF G
Sbjct: 230 DGLMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQG------KNHPALFSTGLI 283
Query: 135 --SLKLLSG-LPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
++ ++G + P + Y + +T+ H G A V+ + + + GQ
Sbjct: 284 ASNISFINGDVRPRTFACTAKFRYRQEDQKVTV-HIRPNG--TAFVEFEKPVKAVTPGQV 340
Query: 189 AAFYQGRRCLGSGVILE 205
A FY CLGS +I E
Sbjct: 341 AVFYDNDVCLGSAIIDE 357
>gi|327273596|ref|XP_003221566.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Anolis carolinensis]
Length = 417
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 90/221 (40%), Gaps = 55/221 (24%)
Query: 34 KDQTYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI----------- 63
KDQT+FLS +SQ LRR IF H VL + ++
Sbjct: 171 KDQTFFLSQISQEALRRTIFPLGDLTKDFVKKIAAEHHLHHVLQRKESMGICFIGERNFE 230
Query: 64 --------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIV 115
P G + E + H+G++ YT+GQ + L + +VV+K+ + V
Sbjct: 231 KFILEYLEPRPGNFVSIEDDKVIGSHKGWFLYTLGQRARISGLKDAW-FVVDKNTASGDV 289
Query: 116 FVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS-----------QLHSVFYNCSLTIEHC 164
FV+ + R L + ++ PP ++ Q C+LT+
Sbjct: 290 FVAPSTDHPALYRSLLRTNRVHWIAEEPPAELIRDKMMECNFRFQHQMALVPCTLTLN-- 347
Query: 165 EDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+DG V L + L GQFA FY+G +CLGSG I+
Sbjct: 348 QDG---TVWVTLVTPLRALTPGQFAVFYKGDKCLGSGKIMR 385
>gi|87122222|ref|ZP_01078105.1| tRNA methyltransferase [Marinomonas sp. MED121]
gi|86162542|gb|EAQ63824.1| tRNA methyltransferase [Marinomonas sp. MED121]
Length = 377
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 109/261 (41%), Gaps = 61/261 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFL---------------SH 42
++ +++ DY+A+GHY H K + KDQ+YFL
Sbjct: 124 LEYANALGADYIATGHYVRRTHDDNQAKLLKGLDNNKDQSYFLYAVGKDEIAKSLFPVGE 183
Query: 43 LSQAQLRRLIFHLVLYPRLTIPMEGIILEAE---------------------TGDFLEKH 81
L + ++RRL L GI E GD + +H
Sbjct: 184 LEKPEVRRLAQEHDLITHNKKDSTGICFIGERRFKDFLEQYLPAQPGDIKTLEGDTIGRH 243
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDK---KRHLFHA 133
G ++TIGQ Q LG+ + YVVEKD++NN++ V+++ S DK K HL +A
Sbjct: 244 SGLMYHTIGQRQGLGIGGLANYSDEPWYVVEKDLDNNVLLVTQS--SDDKPLYKTHL-NA 300
Query: 134 GSLKLLSGLPPE------KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
++ ++ + PE + +C TI DG +++ V E + + GQ
Sbjct: 301 SNMDWVARVAPELPLTCKAKCRYRQADQDC--TISANPDGSIEVSFV---EAQRAITPGQ 355
Query: 188 FAAFYQGRRCLGSGVILEAWD 208
FY CLG G+I A++
Sbjct: 356 SVVFYLDEECLGGGIINRAFN 376
>gi|423377748|ref|ZP_17355032.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1O-2]
gi|423440856|ref|ZP_17417762.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4X2-1]
gi|423448976|ref|ZP_17425855.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5O-1]
gi|423463920|ref|ZP_17440688.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6O-1]
gi|423533284|ref|ZP_17509702.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB2-9]
gi|423541461|ref|ZP_17517852.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB4-10]
gi|423547697|ref|ZP_17524055.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB5-5]
gi|423622518|ref|ZP_17598296.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD148]
gi|401129570|gb|EJQ37253.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5O-1]
gi|401172649|gb|EJQ79870.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB4-10]
gi|401179418|gb|EJQ86591.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB5-5]
gi|401260638|gb|EJR66806.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD148]
gi|401636014|gb|EJS53768.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1O-2]
gi|402417517|gb|EJV49817.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4X2-1]
gi|402420187|gb|EJV52458.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6O-1]
gi|402463503|gb|EJV95203.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB2-9]
Length = 371
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K++++NI++V + +++ A ++ +S E +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKDNILYVDQGFHNELLYGDEVIATNVGWVSNKAKETEFK 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|377809548|ref|YP_005004769.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus claussenii ATCC BAA-344]
gi|361056289|gb|AEV95093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pediococcus claussenii ATCC BAA-344]
Length = 376
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 102/257 (39%), Gaps = 52/257 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D S+ DYVA+GHYA H + KDQTYFLS LS QL R++F L
Sbjct: 113 LDYAISLGADYVATGHYAQAERDENGHQHLLRAVDDNKDQTYFLSQLSADQLDRVMFPLG 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
+ P++ +P + + G + +
Sbjct: 173 GMRKPQVREIAHEAGLAVADKKDSVGICFIGEENFREFLGNYLPAKSGQMMTMDGKVMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ +VV KD+ NI++V + + + + A +
Sbjct: 233 HAGLMYYTIGQRRGLGIGGGSENNEPWFVVGKDLSKNILYVGQGFENPNLYATHLDASDM 292
Query: 137 KLLSGLPPEK------ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
++ L E+ ++ + +T+ +D + V E + + GQ
Sbjct: 293 HFVNKLGAERGHDFKCTAKFRYRAKDVPVTVHFSDDFSQ--VTVAFDEPARAITPGQALV 350
Query: 191 FYQGRRCLGSGVILEAW 207
Y G C+G G+I A+
Sbjct: 351 LYDGDECIGGGIIDAAY 367
>gi|325927859|ref|ZP_08189083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas perforans 91-118]
gi|325541699|gb|EGD13217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas perforans 91-118]
Length = 378
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+DA ++ + +A+GHYA V H + KDQ+YFL L QAQL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRGGRWRLLRGADRGKDQSYFLHQLGQAQLAATLFPIGD 168
Query: 56 -------VLYPRLTIPME--------------------GIILEAETGDF-------LEKH 81
+ +P G L A G+ + +H
Sbjct: 169 LEKSALRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARAGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ NN+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + T++ +DG V+ + + GQ Y
Sbjct: 289 HWVTGAPPARRFTCTAQTRYRQPDEPCTVDVQDDGS---VQVRFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G+ CLG VI
Sbjct: 346 DGQECLGGAVI 356
>gi|127512489|ref|YP_001093686.1| tRNA-specific 2-thiouridylase MnmA [Shewanella loihica PV-4]
gi|166235081|sp|A3QD79.1|MNMA_SHELP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|126637784|gb|ABO23427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella loihica PV-4]
Length = 371
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 97/247 (39%), Gaps = 55/247 (22%)
Query: 7 MEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---------- 53
++ DY+A GHY +S + V KDQ+YFL LS Q+ R +F
Sbjct: 124 LDADYIAMGHYVRRSDASGQSQMLRGVDGNKDQSYFLYTLSHEQIARSLFPVGELEKSEV 183
Query: 54 --------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
+ R +P + +E G+ + +H+G ++
Sbjct: 184 REIAKEMGLVTHDKKDSTGICFIGERKFTDFLRTFLPAQPGKIETAEGEVIGEHQGLMYH 243
Query: 88 TIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
T+GQ + LG+ + YVV+KD+E N++ V + F+A L +
Sbjct: 244 TLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLVVGQGGKHPRLMSVGFYADQLHWVDRT 303
Query: 143 PPEKISQL------HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
P +++ C+LT E G+D V E + GQ A FY G
Sbjct: 304 GPNDGAKITVKTRYRQQDVACTLTYE-----GDDRIKVIFDEPVAAVTPGQSAVFYDGEV 358
Query: 197 CLGSGVI 203
CLG G+I
Sbjct: 359 CLGGGII 365
>gi|375089474|ref|ZP_09735800.1| tRNA-specific 2-thiouridylase mnmA [Facklamia languida CCUG 37842]
gi|374566872|gb|EHR38106.1| tRNA-specific 2-thiouridylase mnmA [Facklamia languida CCUG 37842]
Length = 380
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 104/268 (38%), Gaps = 69/268 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D + DYVA GHYA V+ + S KDQTYFLS L+QAQL++ +F
Sbjct: 116 LDYAMDLGADYVAMGHYAQVMKDEQGVVHLLRGADSNKDQTYFLSQLNQAQLKKTLFPLG 175
Query: 54 HLVLYPRLTIPMEG--------------IILEAETGDFLE-------------------K 80
HL I E I E + DFL +
Sbjct: 176 HLQKAQVRQIAEEAGLATAHKKDSTGVCFIGERKFNDFLSHYLPNQPGPMKTLAGEVKGQ 235
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H G +YTIGQ LG+ +V+ KD ++ ++V + ++ + A
Sbjct: 236 HMGLMYYTIGQRHGLGIGGSTGSDGSNEPWFVIGKDQTSSTLYVGQGFHHENLYSDYLEA 295
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDI-AVVQLSEDDQ----------- 181
L L + + + C++ + + ED+ A V LS+D Q
Sbjct: 296 SDLSFTHDL-------IEDLEFECTVKFRYRQ---EDVPAKVTLSQDRQTCRVDFFEPAR 345
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDD 209
+ GQ FYQG CLG G I + D
Sbjct: 346 AVTPGQALVFYQGEECLGGGFIDACYKD 373
>gi|332525693|ref|ZP_08401842.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax benzoatilyticus JA2]
gi|332109252|gb|EGJ10175.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax benzoatilyticus JA2]
Length = 363
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 95/249 (38%), Gaps = 47/249 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D + + +A+GHYA V K KDQ+YFL L+QAQL R +F +
Sbjct: 111 LDHAMRLGAERIATGHYARVRERDGRFELLKGLDPAKDQSYFLHRLNQAQLARTMFPVGE 170
Query: 58 YPRLTI--------------------------PMEGII----------LEAETGDFLEKH 81
P+ + P + +E E G + +H
Sbjct: 171 LPKTEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYLAQAPGDIEDERGRVVGRH 230
Query: 82 RGFWFYTIGQHQELGLLYIVYR-------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAG 134
G FYT+GQ Q LG+ + YV K++E N++ V + + AG
Sbjct: 231 VGLSFYTLGQRQGLGIGGLKSGGGEHAPWYVARKELERNVLRVVQGHDHPWLLSRTLAAG 290
Query: 135 SLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
++G PP + Y + GE + V+ +E + GQ A Y G
Sbjct: 291 DCAWVAGTPPADGALAAKTRYRQADAACTLRRDGEAV-VLSFAEPQWAVTPGQSAVVYDG 349
Query: 195 RRCLGSGVI 203
CLG GVI
Sbjct: 350 EVCLGGGVI 358
>gi|313678598|ref|YP_004056338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma bovis PG45]
gi|312950108|gb|ADR24703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma bovis PG45]
Length = 374
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 104/242 (42%), Gaps = 45/242 (18%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP--- 59
A +++ DY+A GHYA V ++ K KDQTYFL+ LS QL+R++ L +
Sbjct: 124 AFNNLGADYIAMGHYAKVTDGRL-YRAKDQNKDQTYFLAQLSHEQLKRVLMPLAEFNSKE 182
Query: 60 ----------------------------RLT------IPME-GIILEAETGDFLEKHRGF 84
+ T IPM+ G I++ T + L KH G
Sbjct: 183 EVRKIAQEQGLITASKKDSTGICFIGERKFTKFLQNYIPMQPGDIVDIRTNNKLGKHEGC 242
Query: 85 WFYTIGQHQELGLLYIVY-RYVVEKDIENNIVFVSRNY-YSFDKKRHLFHAGSLKLLSGL 142
++YTIGQ + L L YV D++ NI++V+ + S+ L G +
Sbjct: 243 FYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVAPSSDLSYLTSDALLATGLTLNHNDF 302
Query: 143 PPEKIS-QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+S + N +TIE + I V SE Q + GQ Y+G++CLG
Sbjct: 303 DHNNLSAKFRYRQENIPVTIELLPN--NTIKVYYPSE-AQAVTPGQQVVIYEGQKCLGGA 359
Query: 202 VI 203
VI
Sbjct: 360 VI 361
>gi|424780977|ref|ZP_18207843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Catellicoccus marimammalium M35/04/3]
gi|422842397|gb|EKU26849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Catellicoccus marimammalium M35/04/3]
Length = 374
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 100/260 (38%), Gaps = 56/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DYVA+GHYA V + KDQTYFLS L Q QL + +F L
Sbjct: 113 LDYALELGADYVATGHYARTVRDENGMVHMLRGVDDNKDQTYFLSQLQQHQLEKTLFPLG 172
Query: 56 -VLYPRLTIPME-------------GII--------------LEAETGDFLEK------- 80
+ P++ E GI L A+ G + K
Sbjct: 173 ELEKPKVRAIAEEYDLATAHKKDSTGICFIGERNFKQFLSQYLPAQPGKMVTKEGEVKGQ 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ +V+ KD+ N + V + + D A +
Sbjct: 233 HDGLMYYTIGQRKGLGIGGNGKTNEPWFVIGKDLAKNELIVGQGFTHPDLYADCLTASQV 292
Query: 137 KLLSGLPPEKISQLHSVFY-------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ PEK Q + + +E ED E AVV E + + GQ
Sbjct: 293 SFTT---PEKKPQTFECTAKFRYRQKDVPVRVELNEDQSE--AVVHFLEPARAVTPGQAV 347
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G CLG +I A+ D
Sbjct: 348 VFYDGEECLGGALIDAAYRD 367
>gi|126920887|gb|AAI33484.1| TRMU protein [Bos taurus]
Length = 858
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ +G L + YVV+KD V V+
Sbjct: 680 PRPGRFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVDKDGAKGDVLVAPRTDH 738
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L G + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 739 PALYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 796
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
V+ + LA GQFA FY+G CLGSG IL
Sbjct: 797 AVKAV---RALAPGQFAVFYKGDECLGSGKILR 826
>gi|238026255|ref|YP_002910486.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia glumae BGR1]
gi|237875449|gb|ACR27782.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia glumae BGR1]
Length = 393
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 97/253 (38%), Gaps = 50/253 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D S+ + +A+GHYA V K KDQ+YFL L+QAQL + F L
Sbjct: 110 LDHAMSLGAETIATGHYARVRERDGRFELLKALDQTKDQSYFLHRLNQAQLSKTRFPLGE 169
Query: 58 YP---------RLTIP------MEGI--ILEAETGDFLEK-------------------H 81
P R+ +P GI I E DFL + H
Sbjct: 170 MPKTQVREIAARIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTRPGPMRTPDGRRVGEH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G FYT GQ + +GL +V KDI +N ++V++ + H AG++
Sbjct: 230 IGLAFYTFGQRKGIGLGGSRDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHELVAGNV 289
Query: 137 KLLSGLPPE------KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
++G PP ++ CS + GE + + GQ A
Sbjct: 290 SWVAGEPPADGFVCGAKTRYRQADSACSFARAKAGEAGEPRFSLAFDAPQWAVTPGQSAV 349
Query: 191 FYQGRRCLGSGVI 203
Y G CLG G+I
Sbjct: 350 LYDGEVCLGGGII 362
>gi|340723346|ref|XP_003400051.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Bombus terrestris]
Length = 399
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 101/258 (39%), Gaps = 61/258 (23%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSV-----------KDQTYFLSHLSQAQLRRL 51
A + ++ D +A+GHYA S KP KDQT+FL + Q LR
Sbjct: 112 ARNKLQADAIATGHYARTSFGSYLEHFKPDTNVSLFQARDPGKDQTFFLCQVPQQALRYS 171
Query: 52 IFHLVLYPR-------LTIPMEGIILEAET-----------------------GDFLE-- 79
+F L Y + L ++ I L+ E+ GDF++
Sbjct: 172 MFPLGEYLKKDVKQIALKAGLDKIALKRESRGICFVGKRNFQNFISKYIFDKPGDFVDLD 231
Query: 80 ------KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
KH GF +TIGQ+ ++ Y YV +KDI N + V + ++ L
Sbjct: 232 DGRVVGKHMGFHHWTIGQNIKISGSPAAY-YVYKKDINTNNIIVVKGTHNSALYSELITT 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEH--------CEDGGEDIAVVQLSEDDQGLAA 185
+ +S P S NC L +H ++ ++QLS+ + L
Sbjct: 291 ETPYWISSEPG---FNSFSRLLNCDLRFQHRDPLVPCTVHKNLKNQLIIQLSQPLRALTE 347
Query: 186 GQFAAFYQGRRCLGSGVI 203
GQF Y G CLGS VI
Sbjct: 348 GQFITLYNGEECLGSAVI 365
>gi|167626941|ref|YP_001677441.1| tRNA-specific 2-thiouridylase MnmA [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|189040504|sp|B0TW32.1|MNMA_FRAP2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|167596942|gb|ABZ86940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 359
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 56/246 (22%)
Query: 10 DYVASGHYA--NVVHSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
DY+A+GHYA V+ + K KDQTYFL L Q QL++ +F
Sbjct: 119 DYIATGHYARTKVIDDGSVQLVKGLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKSRVRE 178
Query: 54 -----HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYTI 89
+LV + + I E + DFL K H G +YTI
Sbjct: 179 IAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLPAQKGEIHDENGIKIGMHDGLMYYTI 238
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG-LP 143
GQ Q LG+ + R + +KD+ENN++ + + + A L ++G P
Sbjct: 239 GQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSWVAGSAP 298
Query: 144 PEKISQLHSVFYN-----CSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
+ V Y CS+ + + DG ++ E + + GQ FY CL
Sbjct: 299 ADSFRCSAKVRYRQKDQPCSVEVNN--DGSVNVV---FDEPQRAITPGQSVVFYDNDVCL 353
Query: 199 GSGVIL 204
G G+I+
Sbjct: 354 GGGIII 359
>gi|423389292|ref|ZP_17366518.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1X1-3]
gi|401641383|gb|EJS59100.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1X1-3]
Length = 371
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQGQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATAAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S E +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKETEFK 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|386359595|ref|YP_006057840.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Thermus thermophilus JL-18]
gi|383508622|gb|AFH38054.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermus thermophilus JL-18]
Length = 371
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 97/238 (40%), Gaps = 54/238 (22%)
Query: 7 MEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV------- 56
+ DYVA+GHY A + KDQ+YFL + L L+F HL
Sbjct: 125 LGLDYVATGHYVRR-EGEALLRGLDREKDQSYFLWGTPKEALPHLLFPVGHLTKKEVRQI 183
Query: 57 ---------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
L RL+ P G +++ TG+ + +H+G YT+
Sbjct: 184 AQEAGLPTAKKPESQNLCFVAGDLKGFLKERLS-PRPGPLVDVLTGEVVGEHQGASLYTL 242
Query: 90 GQHQELGLLYI-VYRYVVEKDIENNIVFVSRNYYSFDKKRHLF---HAGSLKLLSGLPPE 145
GQ + LGL + RYVV D+E N+V+V K+ LF A LL+ LP E
Sbjct: 243 GQRKGLGLWKTHLERYVVGLDVERNVVYVG------PKEAALFGGMEAEGENLLAELPEE 296
Query: 146 KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
Q+ +E + ++ E + GQ AAFYQG R LG VI
Sbjct: 297 VEVQVRYRTPPVKAVVESL-----NPLRLRFQEPVFAVTPGQSAAFYQGERLLGGAVI 349
>gi|47459275|ref|YP_016137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma mobile 163K]
gi|81614195|sp|Q6KHK4.1|MNMA_MYCMO RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|47458604|gb|AAT27926.1| tRNA-methyltransferase (5-methylaminomethyl-2-thiouridylate)
[Mycoplasma mobile 163K]
Length = 370
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 49/240 (20%)
Query: 10 DYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI------ 63
D++A+GHYA V +S ++ K KDQ+YFLS LS QL+++IF L + I
Sbjct: 129 DFIATGHYAKV-ENSLLYRAKDRNKDQSYFLSQLSSDQLKKIIFPLKDLTKDVIRKIAAE 187
Query: 64 -------------------------------PMEGIILEAETGDFLEKHRGFWFYTIGQH 92
M G I++ ET + + +H G +YT+GQ
Sbjct: 188 NNLVTAQKKDSTGICFIGERNFDKFLQNYIPNMPGNIVDIETNEVVGQHVGVMYYTLGQ- 246
Query: 93 QELGLLYIVY-RYVVEKDIENNIVFV----SRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
+++ L + Y YV D++N I++V S+NY DK A L++ +K
Sbjct: 247 RKINLSGMKYPYYVAGHDLKNKILYVASIHSKNYLKSDK----LEAIEFNLINKNFNKKN 302
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207
+ + IE I + ++ + + GQ Y G C+G G+I + +
Sbjct: 303 LTAKFRYRQEDIKIEILNIDKNKIE-ISYPDEFEAVTPGQHVVIYDGESCVGGGIINKTY 361
>gi|288799734|ref|ZP_06405193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 299 str. F0039]
gi|288332982|gb|EFC71461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Prevotella sp. oral taxon 299 str. F0039]
Length = 357
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 52/242 (21%)
Query: 8 EFDYVASGHYAN--VVHSSADHKDKPS-VKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIP 64
++D +A+GHYA +++ P VKDQT FL+ + QL++ IF + + + +
Sbjct: 120 DYDLIATGHYAQTEIINGKKWLVTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHFQKDEVR 179
Query: 65 M---------------EGI----------------------ILEAETGDFLEKHRGFWFY 87
+ +GI +LE +T + +H+G WFY
Sbjct: 180 VIAEREHLINAKRKDSQGICFLGKINYNDYIRKYLGENIGEVLELQTNKRIGQHKGLWFY 239
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ LG + +VV+KD+ NNI++VS+ Y + F L+ E++
Sbjct: 240 TIGQRHGLGFGGGPW-FVVKKDVNNNILYVSKGYEPSSAFKSEFGVSDFHFLT----EEV 294
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQ----GLAAGQFAAFY--QGRRCLGSG 201
L +V + T E + E I + + G+A GQF Y + RC+GSG
Sbjct: 295 D-LSNVTFKIRHTPEFHKARMEKINNNEYRLYSECPIHGVAPGQFCVVYDEEHHRCIGSG 353
Query: 202 VI 203
I
Sbjct: 354 EI 355
>gi|387787083|ref|YP_006252179.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mutans LJ23]
gi|379133484|dbj|BAL70236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mutans LJ23]
Length = 373
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 105/263 (39%), Gaps = 51/263 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ PR+ E GI E ++L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
+ +P E + + F + + D A V E + + GQ FY
Sbjct: 291 SQVHFTRNMPDEFTLECTAKFRYRQVDSKVTVKVKGDKAEVIFDEPQRAITPGQAVVFYD 350
Query: 194 GRRCLGSGVILEAWDDQGFPVCK 216
G CLG G+I A+ ++ VC+
Sbjct: 351 GEECLGGGLIDNAYKEE--KVCQ 371
>gi|357235174|ref|ZP_09122517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus criceti HS-6]
gi|356883156|gb|EHI73356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus criceti HS-6]
Length = 373
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 105/264 (39%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D S+ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL+++
Sbjct: 113 LDYAMSLGADYVATGHYAQVSRDEDGTVHMLRGADNN-----KDQTYFLSQLSQEQLQKV 167
Query: 52 IFHL--VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIG 90
+F L + P + E GI E G++L G G
Sbjct: 168 MFPLGHLEKPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTVDG 227
Query: 91 QH--QELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+ + GL+Y +VV KD+ NI++V + +Y
Sbjct: 228 RDMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHESLMSTS 287
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A + +P E + + F + +T++ D E V E + + G
Sbjct: 288 LQASQVHFTRDMPEEFSFECTAKFRYRQPDSKVTVKVSGDKAE----VIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYDGDECLGGGIIDNAYKNE 367
>gi|365903039|ref|ZP_09440862.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus malefermentans
KCTC 3548]
Length = 374
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 62/262 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DYVA+GHYA + H + KDQTYFLS LS QL R++F +
Sbjct: 113 LDYALDLGADYVATGHYAQLSRDENGHMHLMRSVDQNKDQTYFLSQLSTEQLDRVMFPIG 172
Query: 56 -VLYPRL-TIPMEGIILEAET---------------------------------GDFLEK 80
+ P + + E + AE G+
Sbjct: 173 DITKPEVRAMAKEAGLATAEKKDSVGICFIGEKNFKSFLGHYLPATPGKMMTVDGEVKGD 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF----H 132
H G +YTIGQ + LG+ +V+ KD+ NI++V + Y++ HL+
Sbjct: 233 HAGLMYYTIGQRRGLGIGGDGEDNEPWFVIGKDLTKNILYVGKGYHN----EHLYATHLD 288
Query: 133 AGSLKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A + ++ + ++ ++ H + +T++ +DG + + VV + + + G
Sbjct: 289 ASDIHWVNSI--DRGNEFHCTAKFRYRQKDTGVTVKISDDG-QKVTVV-FDDPVRAITPG 344
Query: 187 QFAAFYQGRRCLGSGVILEAWD 208
Q FY G CLGS +I A++
Sbjct: 345 QAVVFYDGAECLGSAIIDAAYN 366
>gi|384419342|ref|YP_005628702.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462255|gb|AEQ96534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 400
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L Q+QL +F +
Sbjct: 131 LDAAQALGAERIATGHYAQVAHRGGRWRLLRGADRGKDQSYFLHQLGQSQLAATLFPIGD 190
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 191 LEKSTLRRIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 250
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 251 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQA 310
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + T++ +DG V + + GQ Y
Sbjct: 311 HWVTGAPPARRFSCTAQTRYRQPDEPCTVDVQDDGS---VQVHFERPQRAVTPGQSLVLY 367
Query: 193 QGRRCLGSGVI 203
G+ CLG VI
Sbjct: 368 DGKECLGGAVI 378
>gi|196044752|ref|ZP_03111986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 03BB108]
gi|196024240|gb|EDX62913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 03BB108]
Length = 372
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 101/239 (42%), Gaps = 41/239 (17%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 124 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 183
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 184 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 243
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 244 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNEAKEKEFK 303
Query: 150 LHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207
+ F Y + E+ + E + + GQ FY G CLG I E +
Sbjct: 304 CTAKFRYRQEDNKVSVQIVDENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDEVY 362
>gi|84624072|ref|YP_451444.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|123521874|sp|Q2P2Q7.1|MNMA_XANOM RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|84368012|dbj|BAE69170.1| Probable tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 378
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L Q+QL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRGRRWRLLRGADRDKDQSYFLHQLGQSQLAATLFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 169 LEKSTLRRIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + T++ +DG V + + GQ Y
Sbjct: 289 HWVTGAPPARRFSCTAQTRYRQPDEPCTVDVQDDGS---VQVHFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G+ CLG VI
Sbjct: 346 DGKECLGGAVI 356
>gi|433463444|ref|ZP_20420998.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halobacillus sp. BAB-2008]
gi|432187539|gb|ELK44819.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halobacillus sp. BAB-2008]
Length = 370
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 100/247 (40%), Gaps = 47/247 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
MD S+ DY+A+GHYA V + ++ V KDQTYFL+ LSQ L +++F L
Sbjct: 113 MDHAMSLGADYLATGHYAQVRENEGTYEMLRGVDNNKDQTYFLNQLSQDVLEKVLFPLGH 172
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
+ + P + +E G+ +H
Sbjct: 173 MEKKEVRRIAEEHGLATAKKKDSTGICFIGERNFKEFLSEYLPAQPGNMETLDGEVKGRH 232
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YT+GQ Q LG+ +VV K++E N+++V + ++ A
Sbjct: 233 DGLMYYTLGQRQGLGIGGAGDPWFVVGKNVEKNVLYVGQGFHHEALYSDGLIASEANWTR 292
Query: 141 GLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
G P++ + + F + ++T+ +DG V E ++ + GQ Y G
Sbjct: 293 GEVPQEPFECTAKFRYRQDDSAVTVYPLDDG---TWKVMFHEPERAITPGQAVVLYDGDV 349
Query: 197 CLGSGVI 203
CLG I
Sbjct: 350 CLGGATI 356
>gi|254375237|ref|ZP_04990717.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548]
gi|151572955|gb|EDN38609.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548]
Length = 359
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 52/244 (21%)
Query: 10 DYVASGHYAN--VVHSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
+Y+A+GHYA V+ + K KDQTYFL L Q QLR+ IF
Sbjct: 119 NYIATGHYARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVRE 178
Query: 54 -----HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYTI 89
+LV + + I E + +FL K H G +YTI
Sbjct: 179 IAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYTI 238
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL-P 143
GQ Q LG+ + R + +KD+ENN++ + + + A L ++G+ P
Sbjct: 239 GQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAP 298
Query: 144 PEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 299 ADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGG 355
Query: 201 GVIL 204
GVI+
Sbjct: 356 GVII 359
>gi|229175070|ref|ZP_04302588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus MM3]
gi|228608438|gb|EEK65742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus MM3]
Length = 376
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIGWVSNEAKEKEFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + G + ++ E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQEDNKVTVQIVD--GNTVRIL-CDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|337750615|ref|YP_004644777.1| protein MnmA [Paenibacillus mucilaginosus KNP414]
gi|336301804|gb|AEI44907.1| MnmA [Paenibacillus mucilaginosus KNP414]
Length = 385
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 101/244 (41%), Gaps = 57/244 (23%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPM- 65
DY+A+GHYA V H+ H+ V KDQTYFL+ L+Q QL + +F + P+ +
Sbjct: 122 DYIATGHYARVEHTDGKHRLLRGVDGNKDQTYFLNALNQYQLSKAMFPIGHLPKPEVRAI 181
Query: 66 --------------EGII--------------LEAETGDF--LE-----KHRGFWFYTIG 90
G+ L A+ GD LE +H G +YT+G
Sbjct: 182 AEKAGLATAKKKDSTGVCFIGERNFKEFLSGYLPAKPGDMRTLEGEVKGRHDGLMYYTLG 241
Query: 91 QHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAG----SLKLLSGLP 143
Q LG+ +V KD+E NI++V + +K L+ G L +SG
Sbjct: 242 QRSGLGIGGSGSGEPWFVAGKDLERNILYVVQG----EKHPALYTKGLLATDLNWISGEI 297
Query: 144 PEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P + + F + +T+ DG A V + + + GQ FY G CLG
Sbjct: 298 PAAPLRCTAKFRYRQPDQGVTLTFGPDG---TAEVVFDQPQKAITPGQAVVFYDGEECLG 354
Query: 200 SGVI 203
I
Sbjct: 355 GATI 358
>gi|171778579|ref|ZP_02919706.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282802|gb|EDT48226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantarius subsp. infantarius ATCC
BAA-102]
Length = 406
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 108/261 (41%), Gaps = 63/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D ++ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL ++
Sbjct: 146 LDYAMTLGADYVATGHYAQVSRDEDGTVHMLRGADNN-----KDQTYFLSQLSQEQLEKV 200
Query: 52 IFHL--VLYPRLTIPME--GII-------------------------LEAETGDFLE--- 79
+F L + P + E G++ L A+ G +
Sbjct: 201 MFPLGHLKKPEVRKIAERAGLVTAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTVDG 260
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+H G +YTIGQ LG+ +VV KD+ NI++V + +Y
Sbjct: 261 RDMGEHAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTS 320
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A S+ +P E ++ + F + +T+ D E V E + + G
Sbjct: 321 LDASSIHFTRDMPEEFTMEVTAKFRYRQPDSKVTVHVKGDKAE----VIFDEPQRAITPG 376
Query: 187 QFAAFYQGRRCLGSGVILEAW 207
Q FY G CLG G+I A+
Sbjct: 377 QAVVFYDGEECLGGGIIDMAY 397
>gi|306832460|ref|ZP_07465612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus subsp. gallolyticus TX20005]
gi|304425360|gb|EFM28480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus subsp. gallolyticus TX20005]
Length = 393
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 108/261 (41%), Gaps = 63/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D ++ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL+++
Sbjct: 133 LDYAMTLGADYVATGHYAQVSRDEDGTVHMLRGADNN-----KDQTYFLSQLSQEQLQKV 187
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F L + P + E GI L A+ G +
Sbjct: 188 MFPLGHLEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDG 247
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+H G +YTIGQ LG+ +VV KD+ NI++V + +Y
Sbjct: 248 RDMGEHAGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTS 307
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A S+ +P E ++ + F + +T+ D E V E + + G
Sbjct: 308 LDASSIHFTRDMPEEFTMEVTAKFRYRQPDSKVTVHVKGDKAE----VVFDEPQRAITPG 363
Query: 187 QFAAFYQGRRCLGSGVILEAW 207
Q FY G CLG G+I A+
Sbjct: 364 QAVVFYDGEECLGGGIIDMAY 384
>gi|325979485|ref|YP_004289201.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|386338912|ref|YP_006035081.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus subsp. gallolyticus ATCC
43143]
gi|325179413|emb|CBZ49457.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334281548|dbj|BAK29122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus subsp. gallolyticus ATCC
43143]
Length = 373
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 110/261 (42%), Gaps = 63/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D ++ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL+++
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDEDGTVHMLRGADNN-----KDQTYFLSQLSQEQLQKV 167
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F L + P + E GI L A+ G +
Sbjct: 168 MFPLGHLEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDG 227
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+H G +YTIGQ LG+ +VV KD+ NI++V + +Y
Sbjct: 228 RDMGEHAGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTS 287
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A S+ +P E ++ + F + +T+ H + D A V E + + G
Sbjct: 288 LDASSIHFTRDMPEEFTMEVTAKFRYRQPDSKVTV-HVKG---DKAEVVFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAW 207
Q FY G CLG G+I A+
Sbjct: 344 QAVVFYDGEECLGGGIIDMAY 364
>gi|254372089|ref|ZP_04987582.1| hypothetical protein FTCG_01230 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151569820|gb|EDN35474.1| hypothetical protein FTCG_01230 [Francisella novicida GA99-3549]
Length = 359
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 52/244 (21%)
Query: 10 DYVASGHYAN--VVHSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
+Y+A+GHYA V+ + K KDQTYFL L Q QLR+ IF
Sbjct: 119 NYIATGHYARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVRE 178
Query: 54 -----HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYTI 89
+LV + + I E + +FL K H G +YTI
Sbjct: 179 IAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLPAQKGEIHDENGIKIGMHDGLMYYTI 238
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL-P 143
GQ Q LG+ + R + +KD+ENN++ + + + A L ++G+ P
Sbjct: 239 GQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAP 298
Query: 144 PEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 299 ADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLGG 355
Query: 201 GVIL 204
GVI+
Sbjct: 356 GVII 359
>gi|422880525|ref|ZP_16926988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1059]
gi|422929954|ref|ZP_16962894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis ATCC 29667]
gi|422930461|ref|ZP_16963392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK340]
gi|332363581|gb|EGJ41362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1059]
gi|339613587|gb|EGQ18323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis ATCC 29667]
gi|339621246|gb|EGQ25809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK340]
Length = 373
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 103/260 (39%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAVTPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G CLG G+I A+ D
Sbjct: 347 VFYDGDECLGGGLIDRAYKD 366
>gi|146319824|ref|YP_001199536.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 05ZYH33]
gi|253752800|ref|YP_003025941.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis SC84]
gi|253754625|ref|YP_003027766.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis P1/7]
gi|253756558|ref|YP_003029698.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis BM407]
gi|386583103|ref|YP_006079507.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis SS12]
gi|386589232|ref|YP_006085633.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis A7]
gi|403062564|ref|YP_006650780.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis S735]
gi|205828994|sp|A4VYE7.1|MNMA_STRSY RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205829102|sp|A4W4N7.2|MNMA_STRS2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|145690630|gb|ABP91136.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Streptococcus suis 05ZYH33]
gi|251817089|emb|CAZ52741.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus suis SC84]
gi|251819022|emb|CAZ56869.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus suis BM407]
gi|251820871|emb|CAR47637.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus suis P1/7]
gi|353735249|gb|AER16259.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis SS12]
gi|354986393|gb|AER45291.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis A7]
gi|402809890|gb|AFR01382.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis S735]
Length = 374
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 114 LDYAMNLGADYVATGHYAQVTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 173
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P++ E GI E G +L G G+ +
Sbjct: 174 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTVDGRDMGE 233
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 234 HTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQ 293
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E V +E + + GQ F
Sbjct: 294 VHFTRDMPEEFTLECTAKFRYRQPDSQVTVKVKGDKAE----VIFAEPQRAITPGQAVVF 349
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G+ CLG G+I A+ D
Sbjct: 350 YDGQECLGGGMIDMAYKD 367
>gi|423615263|ref|ZP_17591097.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD115]
gi|401260942|gb|EJR67109.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD115]
Length = 371
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLLKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K++++NI++V + +++ A ++ +S E +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKDNILYVDQGFHNELLYGDEVIATNVGWVSNKAKETEFK 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|429124232|ref|ZP_19184764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira hampsonii 30446]
gi|426279962|gb|EKV56981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira hampsonii 30446]
Length = 352
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 36/147 (24%)
Query: 7 MEFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHL------ 55
+EFD A+GHYA V + + K +KDQ+YFL L+Q QL ++IF +
Sbjct: 122 LEFDKFATGHYAGVKYDENTKRYLLLRGKNLIKDQSYFLYRLTQDQLSKIIFPMHENTKE 181
Query: 56 ------------------------VLYPRL-TIPMEGIILEAETGDFLEKHRGFWFYTIG 90
Y RL EG I+ +T + L H+G W YT+G
Sbjct: 182 DTRNIARGYNLDVAEKSESQDFFAGEYHRLFDEDKEGSIINIDTNEVLGHHKGIWHYTVG 241
Query: 91 QHQELGLLYIVYRYVVEKDIENNIVFV 117
Q + LG+ Y ++V D E N V+V
Sbjct: 242 QRKGLGIAYKEPLFIVSLDSETNTVYV 268
>gi|350401324|ref|XP_003486118.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Bombus impatiens]
Length = 399
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 61/258 (23%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSV-----------KDQTYFLSHLSQAQLRRL 51
A + ++ D +A+GHY S KP KDQT+FL + Q LR
Sbjct: 112 ACNKLQADAIATGHYVRTSFGSYLEHFKPDTNVSLFQARDAEKDQTFFLCQVPQQALRYS 171
Query: 52 IFHLVLYPRLTIP-------MEGIILEAET-----------------------GDFLE-- 79
+F L Y + + ++ + L+ E+ GDF++
Sbjct: 172 MFPLGEYLKKDVKQIAWKAGLDKVALKRESRGICFVGKRNFQNFISKYISDKPGDFVDLD 231
Query: 80 ------KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
KH GF +TIGQ+ ++ L Y YV +KDI N + V + ++ L
Sbjct: 232 DGRVVGKHMGFHHWTIGQNIKISGLPAAY-YVYKKDINTNNIIVVKGTHNSALYSELIIT 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEH--------CEDGGEDIAVVQLSEDDQGLAA 185
+ +S P S NC L +H ++ ++QLS+ + +
Sbjct: 291 KTPYWISSEPE---FNSFSGLLNCDLRFQHRDPLVSCTVHKNLKNQLIIQLSQPLRAITE 347
Query: 186 GQFAAFYQGRRCLGSGVI 203
GQF Y G CLGS VI
Sbjct: 348 GQFVTLYNGEECLGSAVI 365
>gi|410453648|ref|ZP_11307594.1| tRNA-specific 2-thiouridylase MnmA [Bacillus bataviensis LMG 21833]
gi|409932945|gb|EKN69897.1| tRNA-specific 2-thiouridylase MnmA [Bacillus bataviensis LMG 21833]
Length = 372
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 63/250 (25%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF-----------HL 55
DY+A+GHYA V + ++K + KDQTYFL+ LSQ Q+ +++F +
Sbjct: 124 DYLATGHYARVEYRDGEYKMLRGLDENKDQTYFLNQLSQEQISKVMFPIGNLEKSKVREI 183
Query: 56 VLYPRLT-------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+ L +P + +E G+ KH G ++TIG
Sbjct: 184 AMEAGLATATKKDSTGICFIGERNFKDFLGQYLPAQPGNMETFDGEVKGKHEGLMYHTIG 243
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG--LPPEKI 147
Q LG+ + + KD++ NI++V + ++ A ++ +S +P E
Sbjct: 244 QRHGLGIGGSGEPWFAIGKDLKRNILYVGQGFHHDKLYSDAITAVNVSWVSNHEMPVE-- 301
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQ----------GLAAGQFAAFYQGRRC 197
++C+ + ++ + V+L EDD+ + GQ A FY G C
Sbjct: 302 -------FDCTAKFRYRQE--DHKVTVRLLEDDKVQVLFHEPIRAITPGQAAVFYNGDEC 352
Query: 198 LGSGVILEAW 207
LG G I E +
Sbjct: 353 LGGGTIDEVY 362
>gi|379706238|ref|YP_005204697.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Streptococcus infantarius subsp. infantarius CJ18]
gi|374682937|gb|AEZ63226.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Streptococcus infantarius subsp. infantarius CJ18]
Length = 373
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 110/261 (42%), Gaps = 63/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D ++ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL ++
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDEDGTVHMLRGADNN-----KDQTYFLSQLSQEQLEKV 167
Query: 52 IFHL--VLYPRLTIPME--GII-------------------------LEAETGDFLE--- 79
+F L + P + E G++ L A+ G +
Sbjct: 168 MFPLGHLKKPEVRKIAERAGLVTAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTVDG 227
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+H G +YTIGQ LG+ +VV KD+ NI++V + +Y
Sbjct: 228 RDMGEHAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTS 287
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A S+ +P E ++ + F + +T+ H + D A V E + + G
Sbjct: 288 LDASSIHFTRDMPEEFTMEVTAKFRYRQPDSKVTV-HVKG---DKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAW 207
Q FY G CLG G+I A+
Sbjct: 344 QAVVFYDGEECLGGGIIDMAY 364
>gi|229163345|ref|ZP_04291297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus R309803]
gi|228620126|gb|EEK77000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus R309803]
Length = 372
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 124 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 183
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 184 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 243
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S E +
Sbjct: 244 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEAEFK 303
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 304 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 360
Query: 206 AW 207
+
Sbjct: 361 VY 362
>gi|419706720|ref|ZP_14234234.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus salivarius PS4]
gi|383283544|gb|EIC81494.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus salivarius PS4]
Length = 373
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 104/257 (40%), Gaps = 51/257 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VVH + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVVHDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ P + E GI E +L +G +G+
Sbjct: 173 HLQKPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+ +P E + + F Y + + GE V+ +E + + GQ FY
Sbjct: 291 SMIHFTREMPEEFEMECTAKFRYRQPDSKVTVKVKGEKAEVI-FAEPQRAITPGQAVVFY 349
Query: 193 QGRRCLGSGVILEAWDD 209
G+ CLG G+I +A+ D
Sbjct: 350 DGQECLGGGIIDQAYKD 366
>gi|58582179|ref|YP_201195.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|188576740|ref|YP_001913669.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188576931|ref|YP_001913860.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|75435215|sp|Q5GZR1.1|MNMA_XANOR RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205829009|sp|B2SMD7.1|MNMA_XANOP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|58426773|gb|AAW75810.1| tRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|188521192|gb|ACD59137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas oryzae pv. oryzae PXO99A]
gi|188521383|gb|ACD59328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas oryzae pv. oryzae PXO99A]
Length = 378
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L Q+QL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRGGRWRLLRGADRDKDQSYFLHQLGQSQLAATLFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 169 LEKSTLRRIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + T++ +DG V + + GQ Y
Sbjct: 289 HWVTGAPPARRFSCTAQTRYRQPDEPCTVDVQDDGS---VQVHFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G+ CLG VI
Sbjct: 346 DGKECLGGAVI 356
>gi|359798617|ref|ZP_09301188.1| tRNA-specific 2-thiouridylase MnmA [Achromobacter arsenitoxydans
SY8]
gi|359363439|gb|EHK65165.1| tRNA-specific 2-thiouridylase MnmA [Achromobacter arsenitoxydans
SY8]
Length = 372
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 104/262 (39%), Gaps = 62/262 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH--------KDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ +++A+GHYA V AD K + KDQ+YFL L+QAQL R +
Sbjct: 115 LDHAMALGAEHIATGHYARVREVPADGGGTQFQLLKALDASKDQSYFLHRLNQAQLSRTL 174
Query: 53 F-----HLVLYPRLT-------------------------------IPME-GIILEAETG 75
F H R+ +P E G IL E G
Sbjct: 175 FPLGEIHKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLPTEPGPILTPE-G 233
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFD 125
+ +H G FYT+GQ + LG+ + R YV KD+E N+++V + +
Sbjct: 234 QKVGRHEGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYVARKDLERNVLYVVQGHDHPW 293
Query: 126 KKRHLFHAGSLKLLSGLPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQG 182
A ++G PP + Y + + + DG +A +E
Sbjct: 294 LLSDSLQAQDASWVAGHPPAAGAYGAKTRYRQADAACRLGSAADGAFSLA---FTEPQWA 350
Query: 183 LAAGQFAAFYQGRRCLGSGVIL 204
+ GQ A Y G CLG G+IL
Sbjct: 351 VTPGQSAVLYDGEVCLGGGIIL 372
>gi|423521748|ref|ZP_17498221.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA4-10]
gi|401176410|gb|EJQ83605.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuA4-10]
Length = 371
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S EK
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEKEFT 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I +
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDD 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|312866787|ref|ZP_07727000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis F0405]
gi|311097570|gb|EFQ55801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis F0405]
Length = 373
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME---------------------------GIILEAETGDFLE-------K 80
+ P + E G L A+ G + +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTIDGRDMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y HA
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLHASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|423483973|ref|ZP_17460663.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6X1-2]
gi|401141524|gb|EJQ49079.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6X1-2]
Length = 371
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK--- 146
Q LG+ + V K+++ NI++V + +++ A ++ +S EK
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKEKEFK 302
Query: 147 -ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
++ + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKCRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|228910232|ref|ZP_04074050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis IBL 200]
gi|228849396|gb|EEM94232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis IBL 200]
Length = 376
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S E +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKETEFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|56475956|ref|YP_157545.1| tRNA-specific 2-thiouridylase MnmA [Aromatoleum aromaticum EbN1]
gi|81598997|sp|Q5P7R7.1|MNMA_AROAE RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|56311999|emb|CAI06644.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
[Aromatoleum aromaticum EbN1]
Length = 374
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 104/265 (39%), Gaps = 69/265 (26%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH-------KDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ D +A+GHYA V + D K + KDQ+YFL L+QAQL + +F
Sbjct: 116 LDHAMALGADRIATGHYAQVREWANDGRSEYQLLKAEDGTKDQSYFLYRLNQAQLAKTLF 175
Query: 54 HL-VLYPRLT-----------------------------------IPME-GIILEAETGD 76
L LY R +PM G I + G
Sbjct: 176 PLGALYKRDVRRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLPMRPGEIRNLDDGR 235
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFDK 126
+ +H+G ++TIGQ + L + I R YV KD++ N+++ + +
Sbjct: 236 VIGEHQGLMYHTIGQRKGLHIGGIKGRQDGAGEHDAWYVAGKDVKANVLYAVQGHEHPAL 295
Query: 127 KRHLFHAGSLKLLSGLPPEKISQLHSVFY--------NCSLTIEHCEDGGEDIAVVQLSE 178
+ A L ++G P H V+ + IE DGG +I +E
Sbjct: 296 LKTRLSATDLHWIAGRDP----HTHWVYTAKPRYRTPDMPCEIEALVDGGAEIV---FAE 348
Query: 179 DDQGLAAGQFAAFYQGRRCLGSGVI 203
L GQ Y+ + CLG GVI
Sbjct: 349 PQWALTPGQSVVVYESKVCLGGGVI 373
>gi|229019618|ref|ZP_04176430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1273]
gi|228741666|gb|EEL91854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1273]
Length = 376
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 ATAAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S E +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKETEFK 307
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|228923148|ref|ZP_04086439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228941564|ref|ZP_04104113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228954681|ref|ZP_04116704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228960668|ref|ZP_04122313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|228974494|ref|ZP_04135061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228981088|ref|ZP_04141389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis Bt407]
gi|229048104|ref|ZP_04193677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH676]
gi|229071905|ref|ZP_04205116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus F65185]
gi|229081661|ref|ZP_04214156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock4-2]
gi|229111869|ref|ZP_04241415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock1-15]
gi|229129677|ref|ZP_04258645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-Cer4]
gi|229146967|ref|ZP_04275331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST24]
gi|229152600|ref|ZP_04280789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus m1550]
gi|229180672|ref|ZP_04308012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 172560W]
gi|229192608|ref|ZP_04319569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus ATCC 10876]
gi|228590915|gb|EEK48773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus ATCC 10876]
gi|228602817|gb|EEK60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus 172560W]
gi|228630861|gb|EEK87501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus m1550]
gi|228636566|gb|EEK93032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-ST24]
gi|228653794|gb|EEL09664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus BDRD-Cer4]
gi|228671625|gb|EEL26923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock1-15]
gi|228701665|gb|EEL54156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus Rock4-2]
gi|228711201|gb|EEL63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus F65185]
gi|228723259|gb|EEL74631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH676]
gi|228778629|gb|EEM26895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis Bt407]
gi|228785211|gb|EEM33223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228799032|gb|EEM46004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|228805008|gb|EEM51604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228818120|gb|EEM64196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228836527|gb|EEM81877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 376
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 128 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 187
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 188 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 247
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S E +
Sbjct: 248 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKEKETEFK 307
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 308 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 364
Query: 206 AW 207
+
Sbjct: 365 VY 366
>gi|445062477|ref|ZP_21374860.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira hampsonii 30599]
gi|444506141|gb|ELV06520.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Brachyspira hampsonii 30599]
Length = 352
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 36/147 (24%)
Query: 7 MEFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHL------ 55
+EFD A+GHYA V + + K +KDQ+YFL L+Q QL ++IF +
Sbjct: 122 LEFDKFATGHYAGVKYDENTKRYLLLRGKNLIKDQSYFLYRLTQDQLSKIIFPMHENTKE 181
Query: 56 ------------------------VLYPRL-TIPMEGIILEAETGDFLEKHRGFWFYTIG 90
Y RL EG I+ +T + L H+G W YT+G
Sbjct: 182 DTRNIARGYNLDVAEKSESQDFFAGEYHRLFDEDKEGNIINIDTNEVLGHHKGIWHYTVG 241
Query: 91 QHQELGLLYIVYRYVVEKDIENNIVFV 117
Q + LG+ Y ++V D E N V+V
Sbjct: 242 QRKGLGIAYKEPLFIVSLDSETNTVYV 268
>gi|340788819|ref|YP_004754284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Collimonas fungivorans Ter331]
gi|340554086|gb|AEK63461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Collimonas fungivorans Ter331]
Length = 373
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 99/256 (38%), Gaps = 53/256 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + D +A+GHYA V + + K + KDQ+YFL L+Q+QL R +F L
Sbjct: 111 LDHAMKLGADLIATGHYARVRQADSGRFELLKAVDASKDQSYFLHRLNQSQLSRTLFPLG 170
Query: 56 --------VLYPRLTIP------MEGIILEAE---------------------TGDFLEK 80
+ ++ +P GI E GD + +
Sbjct: 171 EIQKTEVRKIAEQIQLPNAKKKDSTGICFIGERPFREFLNRYLSYKPGPMKTPDGDVVGE 230
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFDKKRHL 130
H G FYT+GQ + +GL + YV KD+ENN +++ + +
Sbjct: 231 HVGLSFYTLGQRKGIGLGGMKTHKNAGGDSDPWYVARKDVENNTLYIVQGHDHPWLLSST 290
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
AG L ++G P Y + + T + + + S+ + GQ
Sbjct: 291 LQAGQLSWVAGEAPGSGQLSAKTRYRQADMACTFDSLRLPEAENFALSFSDPQWAVTPGQ 350
Query: 188 FAAFYQGRRCLGSGVI 203
A Y G CLG G+I
Sbjct: 351 SAVLYDGDICLGGGII 366
>gi|291296936|ref|YP_003508334.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Meiothermus ruber DSM 1279]
gi|290471895|gb|ADD29314.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Meiothermus ruber DSM 1279]
Length = 362
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 92/242 (38%), Gaps = 44/242 (18%)
Query: 10 DYVASGHYANVVHSSADHKDKPSVKDQTYFL---------------SHLSQAQLRRLIFH 54
DYVA+GHY + ++ P KDQTYFL HL + Q+R L
Sbjct: 121 DYVATGHYV-INRDGGLYRGDPK-KDQTYFLWGTPKEAIPHMLFPVGHLEKPQVRALAEQ 178
Query: 55 LVLYPRLTIP----------------------MEGIILEAETGDFLEKHRGFWFYTIGQH 92
L P P G +++ ETG + +H G FYT+GQ
Sbjct: 179 FGL-PTAKKPESQNICFVQGDLKDFLAQHLSARPGPLIDLETGQQIGEHNGAQFYTVGQK 237
Query: 93 QELGLLYI-VYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLH 151
+ LGL + RYVV+ + N V V + L LP Q+
Sbjct: 238 KGLGLWKSHLERYVVQVNTTTNEVIVGPREACMWGGLEIREVNLLVEAQDLPERLEVQVR 297
Query: 152 SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAWDDQG 211
+E E G V++L+E + GQ A YQG R LG G I A +Q
Sbjct: 298 YRTRPVPARVEAMEAGR---MVIRLAEPQFAVTPGQSAVLYQGERLLGGGFITRALYNQF 354
Query: 212 FP 213
P
Sbjct: 355 QP 356
>gi|346314627|ref|ZP_08856145.1| tRNA methyl transferase [Erysipelotrichaceae bacterium 2_2_44A]
gi|345906151|gb|EGX75882.1| tRNA methyl transferase [Erysipelotrichaceae bacterium 2_2_44A]
Length = 386
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 57/253 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
MD + FD +A+GHYA V HS+ + + + KDQTYFL +SQ LR +F +
Sbjct: 119 MDYARRLGFDTLATGHYAQVDHSAEESRMLRGADNNKDQTYFLCQVSQDALRHSMFPVGH 178
Query: 56 -------VLYPRLTI-----------------------------PMEGIILEAETGDFLE 79
+ R+ + +G I++ ET + +
Sbjct: 179 MEKQEVREIAERMELNSVAEKKDSTGICFIGERNFKEFLKNYLPSRDGDIMDIETLEVVG 238
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
+H G +YTIGQ + LG+ +VV KD++ NI++V+ S H+ S +
Sbjct: 239 RHSGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSES-----DWLHSDSC-I 292
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGG--------EDIAVVQLSEDDQGLAAGQFAA 190
+SG+ S+ Y C+ + + E ++ + + AGQ A
Sbjct: 293 VSGVNWFS-SERPQGDYVCTAKFRYRQPDNDVILRFIDETTVFLRYPQMVSSVTAGQEAV 351
Query: 191 FYQGRRCLGSGVI 203
FYQ CLG GVI
Sbjct: 352 FYQKEECLGGGVI 364
>gi|284007318|emb|CBA72670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Arsenophonus nasoniae]
Length = 364
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 57/252 (22%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
A + DY+A+GHYA + H + + KDQ+YFL L QAQL + +F +
Sbjct: 111 AAEDLAADYIATGHYARCKTVNGRHQLLRGLDNNKDQSYFLYTLDQAQLAQSLFPIGELE 170
Query: 60 RLTI------------------------------------PMEGIILEAETGDFLEKHRG 83
+ T+ P + ++ G L +H G
Sbjct: 171 KSTVRRIAEEIGLITAKKKDSTGICFIGERKFRDFLARYLPAKPGVIITVDGKILGEHSG 230
Query: 84 FWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
++T+GQ + LG+ + YVV+KDI+NN + V++ + + R + ++
Sbjct: 231 LMYHTLGQRKGLGIGGVKEANDDPWYVVDKDIKNNRLIVAQGH---NHPRLMSTGLIVQQ 287
Query: 139 LSGLPPEKISQLHSVFY-------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ + P +++ + + TI+ D + +VQ + GQ A F
Sbjct: 288 IHWINPPALNETNQYTVKTRYRQPDIPCTIKQLSD---NKIIVQFDYPIAAVTPGQSAVF 344
Query: 192 YQGRRCLGSGVI 203
YQG CLG GVI
Sbjct: 345 YQGEICLGGGVI 356
>gi|187922695|ref|YP_001894337.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phytofirmans PsJN]
gi|229486336|sp|B2SX74.1|MNMA_BURPP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|187713889|gb|ACD15113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia phytofirmans PsJN]
Length = 383
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 106/276 (38%), Gaps = 57/276 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
+D S+ + +A+GHYA V + + K KDQ+YFL L+QAQL + +F L
Sbjct: 110 LDHAMSLGAETIATGHYARVRQNERNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPL 169
Query: 56 VLYPRLTI------------------------------------PMEGIILEAETGDFLE 79
P+ + P + ++ G +
Sbjct: 170 GEIPKTKVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPMKTTDGKVVG 229
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAG 134
+H G FYT GQ + +GL +V KDI +N ++V++ + H AG
Sbjct: 230 EHIGLAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHAWLLSHTLSAG 289
Query: 135 SLKLLSGLPPE------KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
+ ++G PP ++ C+ + GE + + + GQ
Sbjct: 290 NTSWVAGEPPADGFACGAKTRYRQADAPCTFS---SAGSGEGLFELNFDAAQWAVTPGQS 346
Query: 189 AAFYQGRRCLGSGVILEAWDDQGFPVCKKALEIARM 224
A Y G CLG G+I A Q PV ++ + A +
Sbjct: 347 AVLYDGDVCLGGGIIEHAVTGQ--PVAREPQKAALL 380
>gi|328950099|ref|YP_004367434.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis
DSM 14884]
gi|328450423|gb|AEB11324.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis
DSM 14884]
Length = 374
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 95/236 (40%), Gaps = 47/236 (19%)
Query: 10 DYVASGHYANVVHSSAD---HKDKPSVKDQTYFL---------------SHLSQAQLRRL 51
DYVA+GHY V H+ KDQTYFL H+ + ++RRL
Sbjct: 125 DYVATGHYVRRVEGPQGIEFHRGGDPRKDQTYFLWGTPREAMPHILFPVGHMQKPEVRRL 184
Query: 52 I--FHLVLYPR------LTIP-------------MEGIILEAETGDFLEKHRGFWFYTIG 90
F L+ + +P G +++ ETG+ + +H G FYT+G
Sbjct: 185 AERFGLITAKKPESQNICFVPGSVRAFLEEHLGGQPGPVIDLETGEVIGEHAGAQFYTVG 244
Query: 91 QHQELGLLYI-VYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q + LGL + RYVVE + N V V + A + LL L PE + +
Sbjct: 245 QRKGLGLWKTHLERYVVEVRPQTNEVIVGPREAC---QWRGLEAREINLL--LDPETLPE 299
Query: 150 LHS--VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ + V Y + G V++ E + GQ Y G R LG GVI
Sbjct: 300 VVTAQVRYRQRPARARVRELGAGRFVLEFDEPQFAVTRGQSVVLYDGDRLLGGGVI 355
>gi|312143962|ref|YP_003995408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halanaerobium hydrogeniformans]
gi|311904613|gb|ADQ15054.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halanaerobium hydrogeniformans]
Length = 357
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 96/242 (39%), Gaps = 49/242 (20%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL----------- 55
DY+A+GHY+ + ++ + K + KDQ+Y L L+Q QL R +F L
Sbjct: 121 DYIATGHYSKIEKNNGRYLLKKGRDESKDQSYMLYVLNQEQLSRALFPLGDFTKQEIRQK 180
Query: 56 ------------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFW 85
YP ++ P G IL++E G+ + H G
Sbjct: 181 AKELGFEIHNKAESQEICFVPDDDYVRFLDNNYPEISKP--GPILDSE-GNKVGTHNGIS 237
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ + LG+ YVV+ D +NN V + + F K LF +
Sbjct: 238 NYTIGQRRGLGVALGYPAYVVKLDPDNNAVILGEDEEVFSK--GLFAEDINIIPFSSLDG 295
Query: 146 KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
KI + YN E GED V+ + + + GQ FY G G+I E
Sbjct: 296 KIEVAAQIRYNSYPVPAIIEKIGEDKIKVEFKDSQRAVTPGQSVVFYLDDLVFGGGIIKE 355
Query: 206 AW 207
++
Sbjct: 356 SF 357
>gi|385792032|ref|YP_005825008.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676178|gb|AEB27048.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Francisella cf. novicida Fx1]
Length = 359
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 100/244 (40%), Gaps = 52/244 (21%)
Query: 10 DYVASGHYAN--VVHSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
DY+A+GHYA V+ + K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVRE 178
Query: 54 -----HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYTI 89
+LV + + I E + +FL K H G +YTI
Sbjct: 179 IAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLPAQKGEIHDENGIKIGMHDGLMYYTI 238
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL-P 143
GQ Q LG+ + R + +KD+ENN++ + + + A L ++G+ P
Sbjct: 239 GQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAP 298
Query: 144 PEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+K V Y + S +E +D + V + + + GQ FY CLG
Sbjct: 299 ADKFRCAAKVRYRQKDQSCEVEVNQDASVN---VTFDQPQRAITPGQSVVFYIDDVCLGG 355
Query: 201 GVIL 204
GVI+
Sbjct: 356 GVII 359
>gi|386581026|ref|YP_006077431.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis JS14]
gi|319759218|gb|ADV71160.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis JS14]
Length = 419
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 159 LDYAMNLGADYVATGHYAQVTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P++ E GI E G +L G G+ +
Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTVDGRDMGE 278
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 279 HTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQ 338
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E V +E + + GQ F
Sbjct: 339 VHFTRDMPEEFTLECTAKFRYRQPDSQVTVKVKGDKAE----VIFAEPQRAITPGQAVVF 394
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G+ CLG G+I A+ D
Sbjct: 395 YDGQECLGGGMIDMAYKD 412
>gi|323341801|ref|ZP_08082034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464226|gb|EFY09419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelothrix rhusiopathiae ATCC 19414]
Length = 372
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 62/262 (23%)
Query: 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR- 60
D + + F+ +A+GHYA + ++ KDQTYFLS + L R++F L +
Sbjct: 118 DFMDANGFEALATGHYA-ITRDGKMYRAVDQNKDQTYFLSRVRPEVLPRVLFPLGSLTKD 176
Query: 61 --------LTIPM----------------------------EGIILEAETGDFLEKHRGF 84
L +P+ EG I++ +T L KH+G
Sbjct: 177 EVRRIALELDLPVATKKDSTGICFIGERQYRDFLKNYLKDVEGDIIDVDTQKVLGKHQGV 236
Query: 85 WFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP 143
FYTIGQ L + V +VV KD+ N ++V + D A + ++
Sbjct: 237 MFYTIGQRHGLDISTAVGPWFVVGKDLSTNRIYVGKGA---DHPMLFAGAAEIAEMNWFT 293
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAV-----------VQLSEDDQGLAAGQFAAFY 192
EK+ C+ + + +DI V V++ +D + + GQ A FY
Sbjct: 294 DEKVD------LECTAKFRYRQ---KDIKVRISWLDETRLRVEMIDDVKSVTLGQEAVFY 344
Query: 193 QGRRCLGSGVILEAWDDQGFPV 214
G CLG G I +D G V
Sbjct: 345 LGEECLGGGRIDRVFDTDGNEV 366
>gi|254523199|ref|ZP_05135254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Stenotrophomonas sp. SKA14]
gi|219720790|gb|EED39315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Stenotrophomonas sp. SKA14]
Length = 380
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 98/252 (38%), Gaps = 52/252 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+DA + + +A+GHYA V + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAARELGAERIATGHYARVTQRGGQWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGD 168
Query: 56 ------------VLYP-----------------------RLTIPMEGIILEAETGDFLEK 80
V P R G IL+ G + +
Sbjct: 169 LEKSDLRRIARDVGLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAE 228
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 HPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSRWMLSDRLRSET 288
Query: 136 LKLLSGLPP----EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
++G PP E +Q + T+E +DG +V + + + GQ
Sbjct: 289 AHWIAGSPPARRFECTAQTRYRQPDEPCTVEVLDDGS---VLVSFARPQRAVTPGQSLVL 345
Query: 192 YQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 346 YDGDVCLGGAVI 357
>gi|365158811|ref|ZP_09355002.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. 7_6_55CFAA_CT2]
gi|410676783|ref|YP_006929154.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis Bt407]
gi|423385896|ref|ZP_17363152.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1X1-2]
gi|423411808|ref|ZP_17388928.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3O-2]
gi|423426529|ref|ZP_17403560.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3X2-2]
gi|423432406|ref|ZP_17409410.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4O-1]
gi|423437841|ref|ZP_17414822.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4X12-1]
gi|423502917|ref|ZP_17479509.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HD73]
gi|423527747|ref|ZP_17504192.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB1-1]
gi|423582604|ref|ZP_17558715.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD014]
gi|423585125|ref|ZP_17561212.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD045]
gi|423631120|ref|ZP_17606867.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD154]
gi|423634781|ref|ZP_17610434.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD156]
gi|423640524|ref|ZP_17616142.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD166]
gi|423650260|ref|ZP_17625830.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD169]
gi|423657350|ref|ZP_17632649.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD200]
gi|73919895|sp|Q812R6.2|MNMA_BACCR RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|363626305|gb|EHL77296.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. 7_6_55CFAA_CT2]
gi|401103876|gb|EJQ11853.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3O-2]
gi|401111276|gb|EJQ19175.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG3X2-2]
gi|401117162|gb|EJQ25000.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4O-1]
gi|401120996|gb|EJQ28792.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG4X12-1]
gi|401213483|gb|EJR20224.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD014]
gi|401233768|gb|EJR40254.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD045]
gi|401264487|gb|EJR70599.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD154]
gi|401278767|gb|EJR84697.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD156]
gi|401279585|gb|EJR85507.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD166]
gi|401282678|gb|EJR88577.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD169]
gi|401290093|gb|EJR95797.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus VD200]
gi|401635952|gb|EJS53707.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG1X1-2]
gi|402451410|gb|EJV83229.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HuB1-1]
gi|402459138|gb|EJV90875.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus HD73]
gi|409175912|gb|AFV20217.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis Bt407]
Length = 371
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S E +
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKEKETEFK 302
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|357417560|ref|YP_004930580.1| tRNA-specific 2-thiouridylase MnmA [Pseudoxanthomonas spadix
BD-a59]
gi|355335138|gb|AER56539.1| tRNA-specific 2-thiouridylase MnmA [Pseudoxanthomonas spadix
BD-a59]
Length = 408
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 104/253 (41%), Gaps = 55/253 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---H 54
+DA ++ + +A+GHYA V A + KDQ+YFL L Q QL +F H
Sbjct: 145 IDAARALGAEKIATGHYARVEQRRARWHLLRGADPGKDQSYFLHQLGQEQLAATLFPIGH 204
Query: 55 L------VLYPRLTIPME--------------------GIILEAETGDF-------LEKH 81
L + + +P+ G L A TG+ + +H
Sbjct: 205 LHKPDLRGIARQAGLPVHDKKDSTGICFIGERDFRQFLGQYLPARTGEMRDPDGVVIGQH 264
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +F+T+GQ + L + + R YVV KD+ N+++V ++ S + + +
Sbjct: 265 PGVFFFTLGQREGLNIGGVRGRAAAPWYVVGKDVAGNVLYVDQDTASPYLQSTRLRSEPM 324
Query: 137 KLLSGLPPEKISQLHS------VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
+ G PP Q + C++ ++ EDG DI +L + + GQ
Sbjct: 325 HWIGGSPPAARLQCSAQTRYRQAAEACAVHVQ--EDGTLDIQFARLQ---RAVTPGQSVV 379
Query: 191 FYQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 380 LYDGDDCLGGAVI 392
>gi|218232235|ref|YP_002369206.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus B4264]
gi|218160192|gb|ACK60184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus B4264]
Length = 372
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 124 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 183
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 184 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 243
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S E +
Sbjct: 244 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKEKETEFK 303
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 304 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 360
Query: 206 AW 207
+
Sbjct: 361 VY 362
>gi|319791106|ref|YP_004152746.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase
[Variovorax paradoxus EPS]
gi|315593569|gb|ADU34635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Variovorax paradoxus EPS]
Length = 366
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 98/258 (37%), Gaps = 55/258 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDK------PSVKDQTYFLSHLSQAQLRRLIF- 53
+D + + +A+GHYA V H+ + + PS KDQ+YFL L+QAQL + +F
Sbjct: 110 LDHAMRLGAEKIATGHYARVRHNEVTGRHELLKGLDPS-KDQSYFLHRLNQAQLSKTLFP 168
Query: 54 ----HLVLYPRLT-------------------------------IPMEGIILEAETGDFL 78
H R+ I E ++ + G L
Sbjct: 169 VGELHKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFRDFLNRYISKEPGPIKDDRGRKL 228
Query: 79 EKHRGFWFYTIGQHQELGLLYIVYR------------YVVEKDIENNIVFVSRNYYSFDK 126
+H+G FYT+GQ Q LG+ + + +V KDIE N ++V + +
Sbjct: 229 GEHQGLSFYTLGQRQGLGIGGVKEKGAQRGSGDHSPWFVARKDIEKNTLWVVQGHDHPWL 288
Query: 127 KRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
+A +SG P S Y + D ++ + G
Sbjct: 289 LSSALNADDASWVSGEAPAAGSYGSKARYRQADAGCELSDDANGAFSLRFGAPQWAVTPG 348
Query: 187 QFAAFYQGRRCLGSGVIL 204
Q A Y G RCLG GVI+
Sbjct: 349 QSAVLYDGERCLGGGVIV 366
>gi|13357963|ref|NP_078237.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|170762343|ref|YP_001752485.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma parvum serovar 3
str. ATCC 27815]
gi|171920416|ref|ZP_02931735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|183508565|ref|ZP_02958082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701789|ref|ZP_02971467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma parvum serovar 6 str. ATCC 27818]
gi|14195293|sp|Q9PQ88.1|MNMA_UREPA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|189040514|sp|B1AJ41.1|MNMA_UREP2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|11277497|pir||H82896 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase UU402
[imported] - Ureaplasma urealyticum
gi|6899388|gb|AAF30812.1|AE002137_11 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|168827920|gb|ACA33182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|171902858|gb|EDT49147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|182676011|gb|EDT87916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701067|gb|EDU19349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ureaplasma parvum serovar 6 str. ATCC 27818]
Length = 385
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 66/255 (25%)
Query: 3 AISSMEFDYVASGHYANVVH---SSADHKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV 56
A + ++ DY+A GHYA V H SS K + KDQTYFL +L+Q QL+ ++F HL
Sbjct: 126 AKNELQADYIAMGHYARVKHDRNSSFLLKAIDTNKDQTYFLCNLNQNQLQNVLFPIGHLT 185
Query: 57 -LYPRLTIPMEGIIL-------------EAETGDFLEK--------------------HR 82
L R G+I E FL+ H
Sbjct: 186 KLQVRAIAKKHGLITANKKDSTGICFIGERNFKTFLQNYIPNQPGQIINIVNNQIIGHHI 245
Query: 83 GFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
G +YTIGQ + L L + R +V +KDI+ I++V+ + SF+K+ + ++ ++
Sbjct: 246 GTMYYTIGQRKGLNLGGMNERMFVCDKDIDKKIIYVAPS--SFEKQYLISTQALIENINF 303
Query: 142 LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQ-------------LSEDDQGLAAGQF 188
+ P YN + I +D+ +V E + + GQ+
Sbjct: 304 IEP----------YNPQIPIMVRFRHRQDLIIVNDFLPIKNTKNVLINYESARAITPGQY 353
Query: 189 AAFYQGRRCLGSGVI 203
A FYQ C+G G++
Sbjct: 354 AVFYQNDHCIGGGIV 368
>gi|223933686|ref|ZP_03625662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus suis 89/1591]
gi|223897639|gb|EEF64024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus suis 89/1591]
Length = 419
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 159 LDYAMNLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P++ E GI E G +L G G+ +
Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTVDGRDMGE 278
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 279 HTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQ 338
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E V +E Q + GQ F
Sbjct: 339 VHFTRDMPEEFKLECTAKFRYRQPDSQVTVKVKGDKAE----VIFAEPQQAITPGQAVVF 394
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G+ CLG G+I A+ D
Sbjct: 395 YDGQECLGGGMIDMAYKD 412
>gi|30022472|ref|NP_834103.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus ATCC 14579]
gi|206969454|ref|ZP_03230408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1134]
gi|296504889|ref|YP_003666589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis BMB171]
gi|384188469|ref|YP_005574365.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar chinensis CT-43]
gi|449091364|ref|YP_007423805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|452200860|ref|YP_007480941.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|29898030|gb|AAP11304.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
[Bacillus cereus ATCC 14579]
gi|206735142|gb|EDZ52310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus cereus AH1134]
gi|296325941|gb|ADH08869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis BMB171]
gi|326942178|gb|AEA18074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar chinensis CT-43]
gi|449025121|gb|AGE80284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus thuringiensis serovar kurstaki str. HD73]
gi|452106253|gb|AGG03193.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 372
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 124 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 183
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 184 AKEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 243
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S E +
Sbjct: 244 QRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKEKETEFK 303
Query: 150 LHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 304 CTAKFRYRQEDNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 360
Query: 206 AW 207
+
Sbjct: 361 VY 362
>gi|25298369|pir||C84960 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
2.1.1.61) [imported] - Buchnera sp. (strain APS)
gi|10038936|dbj|BAB12971.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
Length = 392
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---HL- 55
+I ++ DY+A+GHYA + + + K + KDQ+YFL L+ QLR+++F HL
Sbjct: 140 SIQELKADYIATGHYARIKKINGKYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLK 199
Query: 56 -------------------------VLYPRLTIPMEGIILEAETGDFLE-------KHRG 83
+ P+ + + + GD + KH G
Sbjct: 200 KNKVRNIAKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISEKKGDIVTISGRVIGKHSG 259
Query: 84 FWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-K 137
++YTIGQ Q LG+ Y + YVVEK+IE NI+ V++ Y+ +HL G + K
Sbjct: 260 VFYYTIGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYN----KHLMSIGLIAK 315
Query: 138 LLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
++ + ++ +S + Y I E + + GQ FY
Sbjct: 316 NINWINYDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVFYV 375
Query: 194 GRRCLGSGVI 203
C+G G+I
Sbjct: 376 SDICIGGGII 385
>gi|451343103|ref|ZP_21912179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eggerthia catenaformis OT 569 = DSM 20559]
gi|449338099|gb|EMD17251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eggerthia catenaformis OT 569 = DSM 20559]
Length = 375
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 105/261 (40%), Gaps = 74/261 (28%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
++ S+ D++A+GHYA + H H D+ + KDQTYFL L+Q QLR +F
Sbjct: 118 LNYAKSIHADWIATGHYARIEH----HGDRSVMLRGIDDNKDQTYFLCQLNQQQLRNTLF 173
Query: 54 ---HLVL---------------------------------YPRLTIPME-GIILEAETGD 76
HL + + IP + G +++ ETG
Sbjct: 174 PIGHLTKKEVREIAAQLKLSVADKRDSTGICFIGERDFREFLKNYIPAKPGKMIDIETGK 233
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+ +H+G +YTIGQ + L + +V K+ + NI++++ S D+ + L G+
Sbjct: 234 VIAEHQGIMYYTIGQRKGLNIGGKGGPWFVAGKEYDQNILYIA----SGDQNKWLLSEGA 289
Query: 136 LK-----LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE--------DIAVVQLSEDDQG 182
L + P E + NC+ + + E V +
Sbjct: 290 LITAVNWISDNFPKEDL--------NCTAKFRYRQQDNEVSLHFINQHTLYVTFKHPIKS 341
Query: 183 LAAGQFAAFYQGRRCLGSGVI 203
+ GQ A FY G CLG G I
Sbjct: 342 VTPGQAAVFYLGEECLGGGTI 362
>gi|257471315|ref|ZP_05635314.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
Length = 392
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 109/253 (43%), Gaps = 59/253 (23%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---HL- 55
+I ++ DY+A+GHYA + + + K + KDQ+YFL L+ QLR+++F HL
Sbjct: 140 SIQELKADYIATGHYARIKKINGKYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLK 199
Query: 56 -------------------------VLYPRLTIPMEGIILEAETGDFLE-------KHRG 83
+ P+ + + + GD + KH G
Sbjct: 200 KNKVRNIAKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISEKKGDIVTISGRVIGKHSG 259
Query: 84 FWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-K 137
++YTIGQ Q LG+ Y + YVVEK+IE NI+ V++ Y+ +HL G + K
Sbjct: 260 VFYYTIGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYN----KHLMSIGLIAK 315
Query: 138 LLSGLPPEKISQLHSVFY-------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
++ + +++S S + + IE+ + I + GQ
Sbjct: 316 NINWINYDQLSFPLSCMAKTRYRQKDITCKIEYINNHHIKIL---FDFPVAAVTPGQSVV 372
Query: 191 FYQGRRCLGSGVI 203
FY C+G G+I
Sbjct: 373 FYVSDICIGGGII 385
>gi|340368982|ref|XP_003383028.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Amphimedon
queenslandica]
Length = 579
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 115/283 (40%), Gaps = 73/283 (25%)
Query: 4 ISSMEFDYVASGHYANV--------VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF-- 53
I+ D +A+GHYA + + SADH KDQTYFLS +SQ+ L +F
Sbjct: 117 INKYRMDAIATGHYAQLSTNEQGVRLMKSADH-----FKDQTYFLSTVSQSSLLNTLFPI 171
Query: 54 -----------------HLVLYPRLTIPM-------------------EGIILEAETGDF 77
H + + ++ + EG+++ TG+
Sbjct: 172 GHLTKKEVKEIAIENGLHRIAKKKESMGLCFIGKRNNSNFMREYIDGEEGLMINILTGEI 231
Query: 78 LEKHRGFWFYTIGQHQELG-----LLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFH 132
+ KH G +YTIGQ LG L +V+ KDI NN +F+ ++ + ++
Sbjct: 232 MGKHNGHQYYTIGQRSGLGDGNGPL------FVINKDINNNTLFIGPSHLLYSREIVTSK 285
Query: 133 AGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ ++ + + C IE E G V LS+ + + GQ+ FY
Sbjct: 286 PYWIRNITSKVLQARIRHQGELVQCR--IEDYEYG----LRVFLSQPIRAVTPGQYIVFY 339
Query: 193 QGRRCLG-----SGVILEAWDDQGFPVCKKALEIARMEDKSKL 230
G CLG +GV+ E+ +D V ++ + M +L
Sbjct: 340 SGEECLGGACIKNGVMAESANDSHSTVNEEKQHVFVMRHGERL 382
>gi|219681627|ref|YP_002468013.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219624470|gb|ACL30625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
Length = 368
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 111/253 (43%), Gaps = 59/253 (23%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---HL- 55
+I ++ DY+A+GHYA + + + K + KDQ+YFL L+ QLR+++F HL
Sbjct: 116 SIQELKADYIATGHYARIKKINGKYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLK 175
Query: 56 -------------------------VLYPRLTIPMEGIILEAETGDFLE-------KHRG 83
+ P+ + + + GD + KH G
Sbjct: 176 KNKVRNIAKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISEKKGDIVTISGRVIGKHSG 235
Query: 84 FWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-K 137
++YTIGQ Q LG+ Y + YVVEK+IE NI+ V++ Y+ +HL G + K
Sbjct: 236 VFYYTIGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYN----KHLMSIGLIAK 291
Query: 138 LLSGLPPEKISQLHSVFY-------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
++ + +++S S + + IE+ + I ++ + GQ
Sbjct: 292 NINWINYDQLSFPLSCMAKTRYRQKDITCKIEYINN--HHIKIL-FDFPVAAVTPGQSVV 348
Query: 191 FYQGRRCLGSGVI 203
FY C+G G+I
Sbjct: 349 FYVSDICIGGGII 361
>gi|408824673|ref|ZP_11209563.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas geniculata N1]
Length = 380
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 99/252 (39%), Gaps = 52/252 (20%)
Query: 1 MDAISSMEFDYVASGHYANVV---HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+DA + + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGD 168
Query: 56 ------------VLYP-----------------------RLTIPMEGIILEAETGDFLEK 80
V P R G IL+ G + +
Sbjct: 169 LEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAE 228
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 HPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSDRLRSET 288
Query: 136 LKLLSGLPP----EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
++G PP E +Q + T+E +DG +V + + + GQ
Sbjct: 289 AHWIAGAPPARRFECTAQTRYRQPDEPCTVEVLDDGS---VLVTFARPQRAVTPGQSLVL 345
Query: 192 YQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 346 YDGDVCLGGAVI 357
>gi|384226067|ref|YP_005617230.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|384226592|ref|YP_005618343.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
gi|384227123|ref|YP_005618873.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|414562619|ref|YP_005617810.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311085999|gb|ADP66081.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086574|gb|ADP66655.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087155|gb|ADP67235.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087689|gb|ADP67768.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 392
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---HL- 55
+I ++ DY+A+GHYA + + + K + KDQ+YFL L+ QLR+++F HL
Sbjct: 140 SIQELKADYIATGHYARIKKINGKYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLK 199
Query: 56 -------------------------VLYPRLTIPMEGIILEAETGDFLE-------KHRG 83
+ P+ + + + GD + KH G
Sbjct: 200 KNKVRNIAKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISEKKGDIVTISGRVIGKHSG 259
Query: 84 FWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-K 137
++YTIGQ Q LG+ Y + YVVEK+IE NI+ V++ Y+ +HL G + K
Sbjct: 260 VFYYTIGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYN----KHLMSIGLIAK 315
Query: 138 LLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
++ + ++ +S + Y I E + + GQ FY
Sbjct: 316 NINWINYDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDFPVAAVTPGQSVVFYV 375
Query: 194 GRRCLGSGVI 203
C+G G+I
Sbjct: 376 SDICIGGGII 385
>gi|28952048|ref|NP_240085.2| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11135216|sp|P57349.1|MNMA_BUCAI RecName: Full=tRNA-specific 2-thiouridylase MnmA
Length = 368
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---HL- 55
+I ++ DY+A+GHYA + + + K + KDQ+YFL L+ QLR+++F HL
Sbjct: 116 SIQELKADYIATGHYARIKKINGKYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLK 175
Query: 56 -------------------------VLYPRLTIPMEGIILEAETGDFLE-------KHRG 83
+ P+ + + + GD + KH G
Sbjct: 176 KNKVRNIAKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISEKKGDIVTISGRVIGKHSG 235
Query: 84 FWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-K 137
++YTIGQ Q LG+ Y + YVVEK+IE NI+ V++ Y+ +HL G + K
Sbjct: 236 VFYYTIGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYN----KHLMSIGLIAK 291
Query: 138 LLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
++ + ++ +S + Y I E + + GQ FY
Sbjct: 292 NINWINYDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVFYV 351
Query: 194 GRRCLGSGVI 203
C+G G+I
Sbjct: 352 SDICIGGGII 361
>gi|406885944|gb|EKD33050.1| hypothetical protein ACD_76C00099G0009 [uncultured bacterium]
Length = 342
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 96/244 (39%), Gaps = 47/244 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF------- 53
+ + + + +A+GHYA + K + KDQTYFL + + L R++F
Sbjct: 106 LKSADELGIEIIATGHYARIKRGKL-LAGKDNNKDQTYFLWAMPRTALSRVMFPIGDMYK 164
Query: 54 -----------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGF 84
++ + + IP + +G+ + KH+G
Sbjct: 165 TDVRETAKKLGLSVADKKDSVGICFIGEVNMYDFLKKYIPDNPGDIVNSSGNIVGKHKGL 224
Query: 85 WFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
FYTIGQ L + YVV KD++ N + VS NY K L A S L P
Sbjct: 225 PFYTIGQRHGLSIGGGEPYYVVSKDLQKNHLIVSSNYDQGLYKNEL-KAHSSNWLIKAPK 283
Query: 145 EKISQLHSVFYNCSLTIEHC----EDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+K + + Y L E C +GG D + + GQ Y+G CLG
Sbjct: 284 KKFKCMARIRYRQPL--EKCVVIPREGGFDAV---FDRPQRAVTPGQSIVLYKGNVCLGG 338
Query: 201 GVIL 204
G+I+
Sbjct: 339 GIII 342
>gi|205374227|ref|ZP_03227026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus coahuilensis m4-4]
Length = 371
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 47/252 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D + DY+A+GHYA V + K K KDQTYFL+ LSQ L++++F +
Sbjct: 114 LDHAMKLGADYLATGHYAQVEERDGEIKMLRGKDENKDQTYFLNQLSQDVLKKVLFPIGS 173
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
+ + P + +E +G+ +H
Sbjct: 174 LDKSRVREIAKEAGLATATKKDSTGICFIGERNFKEFLGQYLPAQPGTMETLSGEVKGQH 233
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G ++TIGQ LG+ + V KD+E N++FV + + A + S
Sbjct: 234 EGLMYHTIGQRHGLGIGGAGEPWFAVGKDLERNVLFVEQGFDHDSLYSTSILATDISWTS 293
Query: 141 GLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
P E+ + F + S+T++ ++ + V E + + GQ FY G
Sbjct: 294 DFPKEQEFHCTAKFRYRQSDNSVTVKLLDN---NKVEVIFDEPIRAVTPGQAVVFYDGDV 350
Query: 197 CLGSGVILEAWD 208
CLG G I E ++
Sbjct: 351 CLGGGTIDEIFN 362
>gi|406986602|gb|EKE07161.1| hypothetical protein ACD_18C00175G0024 [uncultured bacterium]
Length = 397
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 110/281 (39%), Gaps = 85/281 (30%)
Query: 1 MDAISSMEFDYVASGHYANVV----HSSADHKD-------------------KPSVKDQT 37
+D I + FDY+A+GHYA + H + + K+ K KDQT
Sbjct: 125 LDKIKELGFDYIATGHYAKLARDTNHVTLNKKNEDVPEKEMVRDTCYVLRVPKDENKDQT 184
Query: 38 YFLSHLSQAQLRRLIFHLVLY--------------PRLT--------------------- 62
YFL L+Q QL + +F L Y P T
Sbjct: 185 YFLHQLNQEQLSKTLFPLGDYTKPEVRELAKKFDLPTATKEESMGICFVGELDMKEFLQR 244
Query: 63 -IPMEGIILEAETGDFLEKHRGFWFYTIGQH---QELGLLYIVYRYVVEKDIENNIVFVS 118
+P + E+G+ + H G FYTIGQ ++ G +++ VV K+ E N + V
Sbjct: 245 DLPKNPGKIVTESGEVIGDHEGLAFYTIGQRHGFEQQGGGNVLF--VVAKNKEKNELIVG 302
Query: 119 RNYYSFDKKRHLFHAGSLKL-----LSGLPPEKIS---QLHSVFYNCSLTIEHCE----- 165
DK L + +++ +SG Q+ C++ + H +
Sbjct: 303 ------DKDSELLNKDEIEVEDINWVSGFIRRSFGEGGQIPVFPLKCTVRLRHRQALQEV 356
Query: 166 --DGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+ ++I ++ + +GQFA FY+ CLG GVI+
Sbjct: 357 TVEKNDNIYKLKFLNKQKAATSGQFAVFYKDGECLGGGVII 397
>gi|398817760|ref|ZP_10576367.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brevibacillus sp. BC25]
gi|398029362|gb|EJL22838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brevibacillus sp. BC25]
Length = 370
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 95/242 (39%), Gaps = 51/242 (21%)
Query: 10 DYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V + ++K + KDQTYFL+ L Q QL + +F + P+ +
Sbjct: 122 DYIATGHYAQVKYIDGEYKLIRGADNNKDQTYFLNVLGQEQLSKTMFPIGNLPKPQVREI 181
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + +E G + H G +YT+G
Sbjct: 182 AEKAGLYTAKKKDSTGICFIGERNFRDFLQNYLPAKPGNIETVDGAVIGTHDGLMYYTLG 241
Query: 91 QHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
Q Q LG+ +VV+KD+E N++ V A ++ +S P
Sbjct: 242 QRQGLGIGGGHGTSGQPWFVVDKDLERNVLIVGEGSDHIRLYSKSLLATNVSWVSDKKPS 301
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ + F + +T+ EDG ++ + + + GQ FY G CLG G
Sbjct: 302 ETFTCTAKFRYRQPDQGVTVHLLEDGTVEVV---FDQPQKAVTPGQAVVFYDGEVCLGGG 358
Query: 202 VI 203
I
Sbjct: 359 TI 360
>gi|242239492|ref|YP_002987673.1| tRNA-specific 2-thiouridylase MnmA [Dickeya dadantii Ech703]
gi|242131549|gb|ACS85851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dickeya dadantii Ech703]
Length = 370
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 105/257 (40%), Gaps = 62/257 (24%)
Query: 3 AISSMEFDYVASGHYA---NVVHSSADHKDKPSVKDQTYFLSHLS--------------- 44
A + DY+A+GHY ++ S + + KDQ+YFL LS
Sbjct: 116 AAEDLCADYIATGHYVRRQDIAGKSRLLRGLDNNKDQSYFLYTLSHEQVAQSLFPVGELE 175
Query: 45 QAQLRRLIFHLVL----------------------YPRLTIPMEGIILEAETGDFLEKHR 82
+ Q+RR+ L L R G I+ + G + +H+
Sbjct: 176 KPQVRRIAEELDLATAKKKDSTGICFIGERKFRDFLARYLPAQPGAIISVDDGKTMGEHQ 235
Query: 83 GFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK 137
G ++T+GQ + LG+ + YVV+KD+ NNI++V++ + + R + +
Sbjct: 236 GLMYHTLGQRKGLGIGGVRDGGDDPWYVVDKDVANNILYVAQGH---EHPRLMSQGLIAQ 292
Query: 138 LLSGLPPEKISQLHSVFYN---------CSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
L + E +SQ + C+LT GE+ V+ + GQ
Sbjct: 293 QLHWVDREPLSQPQTCTVKTRYRQADIPCTLTPL-----GEERVEVRFESPVAAVTPGQS 347
Query: 189 AAFYQGRRCLGSGVILE 205
A FYQG CLG G+I E
Sbjct: 348 AVFYQGEVCLGGGIIEE 364
>gi|339640906|ref|ZP_08662350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. oral taxon 056 str. F0418]
gi|339454175|gb|EGP66790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. oral taxon 056 str. F0418]
Length = 373
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 95/252 (37%), Gaps = 45/252 (17%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA VV + K + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYALTLGADYVATGHYAQVVRDKDGTIHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL I + A+ D +L G G+ Q
Sbjct: 173 HLEKSEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLRQNILYVGQGFYHDNLMSTSLTASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ +P E + + F + D A V + + + GQ FY G
Sbjct: 293 IHFTRKMPDEFTLECTAKFRYRQPDTKVTVFVKGDKATVDFDQPQRAITPGQAVVFYDGE 352
Query: 196 RCLGSGVILEAW 207
CLG G+I A+
Sbjct: 353 ECLGGGLIDNAY 364
>gi|219682184|ref|YP_002468568.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219621917|gb|ACL30073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
Length = 368
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---HL- 55
+I ++ DY+A+GHYA + + + K + KDQ+YFL L+ QLR+++F HL
Sbjct: 116 SIQELKADYIATGHYARIKKINGKYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLK 175
Query: 56 -------------------------VLYPRLTIPMEGIILEAETGDFLE-------KHRG 83
+ P+ + + + GD + KH G
Sbjct: 176 KNKVRNIAKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISEKKGDIVTISGRVIGKHSG 235
Query: 84 FWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-K 137
++YTIGQ Q LG+ Y + YVVEK+IE NI+ V++ Y+ +HL G + K
Sbjct: 236 VFYYTIGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYN----KHLMSIGLIAK 291
Query: 138 LLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
++ + ++ +S + Y I E + + GQ FY
Sbjct: 292 NINWINYDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDFPVAAVTPGQSVVFYV 351
Query: 194 GRRCLGSGVI 203
C+G G+I
Sbjct: 352 SDICIGGGII 361
>gi|333984719|ref|YP_004513929.1| tRNA-specific 2-thiouridylase mnmA [Methylomonas methanica MC09]
gi|333808760|gb|AEG01430.1| tRNA-specific 2-thiouridylase mnmA [Methylomonas methanica MC09]
Length = 364
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 99/251 (39%), Gaps = 54/251 (21%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL--VL 57
AI + +Y+A+GHYA V + K K+Q+YFL + Q L + +F + +
Sbjct: 112 AIEDLGAEYIATGHYARVCEQDGEFQLLKGLDPNKEQSYFLYAMGQKALSKTLFPIGHLH 171
Query: 58 YPRLT----------------------------------IPMEGIILEAETGDFLEKHRG 83
P + +P + + G + +H G
Sbjct: 172 KPEIRAMADRAGFANSRKKDSTGICFIGERKFKEFLQRYLPHQPGEMRTPEGQTIGQHHG 231
Query: 84 FWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
+YT+GQ Q LG+ + +V+EKD+ENNI+ V + + + AG L
Sbjct: 232 LMYYTLGQRQGLGIGGVKNAPDEPWFVLEKDLENNILLVGQGHDHPLMLHNTLEAGQLDW 291
Query: 139 LSGLPPEKI------SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
P + ++ +C + DGG + V + E + + GQ FY
Sbjct: 292 CGSQPLNETLRCAAKTRYRQADQDC---LVEPIDGGTRVKV-RFDEPQRAITPGQSVVFY 347
Query: 193 QGRRCLGSGVI 203
+G CLG G+I
Sbjct: 348 RGEVCLGGGII 358
>gi|312194884|ref|YP_004014945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Frankia sp. EuI1c]
gi|311226220|gb|ADP79075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Frankia sp. EuI1c]
Length = 359
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 95/241 (39%), Gaps = 46/241 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPM 65
++ FD V +GH+A + + KDQ+Y L L QLRR IF L + +
Sbjct: 116 ALGFDAVVTGHHARLSADGVLRRSVDPAKDQSYVLGTLRPEQLRRAIFPLGDSTKAQVRA 175
Query: 66 E-------------------------------------GIILEAETGDFLEKHRGFWFYT 88
E G I++A TG+ L H G + +T
Sbjct: 176 EAAARGLGVADKPDSHDICFVPSGDTGAWLRDRLGAKPGPIVDAATGETLGAHDGTFAFT 235
Query: 89 IGQHQELGLLYIVY----RYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
+GQ + L L RYV++ + V V S D R + AG G+
Sbjct: 236 VGQRRGLRLGRPAPDGRPRYVLDISPVTSTVTVG-PAESLDVWRLVADAGVWAAPEGVDV 294
Query: 145 EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
E ++Q+ + + ++ DGGE ++L +G AAGQ Y G R LG G IL
Sbjct: 295 ECLAQVRA--HGDAVPAVARADGGE--LSIELRAPVRGTAAGQAVVLYDGDRVLGGGHIL 350
Query: 205 E 205
Sbjct: 351 R 351
>gi|383787642|ref|YP_005472211.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Fervidobacterium pennivorans DSM 9078]
gi|383110489|gb|AFG36092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Fervidobacterium pennivorans DSM 9078]
Length = 362
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 48/244 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60
MD S +YVASGHYA ++ +K KDQ+YFL+ + + +L+R+I Y +
Sbjct: 122 MDVALSDGMEYVASGHYARIIDGKL-YKAVDESKDQSYFLASIKKEKLKRIILPNGYYTK 180
Query: 61 LTI----PMEGIILE---------------------------------AETGDFLEKHRG 83
I +GI + G + KH G
Sbjct: 181 DEIRKIAQQQGIHVAHKIDSQDLCFLPDNDLKSFFKDWGVDVKAGNIITTDGRIIGKHDG 240
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP 143
FYTIGQ ++LG+ YV K+++ N + V+ +DK H+ +L +
Sbjct: 241 LPFYTIGQ-RKLGIAAGSKLYVRAKNVDGNFILVAPVDKLYDK--HMV-VSNLNVYDDYL 296
Query: 144 PEKIS---QLHSVFYNCSLTIEHCE-DGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P + ++ F T+++ E DGG+ V E + GQ A FY G R +
Sbjct: 297 PNEFRASVKIRKKFKEVGCTVQYREEDGGK--LFVTFDEPTFAVTPGQIAVFYDGPRVIC 354
Query: 200 SGVI 203
+GVI
Sbjct: 355 AGVI 358
>gi|386587232|ref|YP_006083634.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis D12]
gi|353739378|gb|AER20386.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis D12]
Length = 374
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 114 LDYAMNLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 173
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P++ E GI E G +L G G+ +
Sbjct: 174 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTVDGRDMGE 233
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 234 HTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQ 293
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E V +E + + GQ F
Sbjct: 294 VHFTRDMPEEFTLECTAKFRYRQPDSQVTVKVKGDKAE----VIFAEPQRAITPGQAVVF 349
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G+ CLG G+I A+ D
Sbjct: 350 YDGQECLGGGMIDMAYKD 367
>gi|146322015|ref|YP_001201726.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 98HAH33]
gi|386578957|ref|YP_006075363.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus suis GZ1]
gi|145692821|gb|ABP93326.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Streptococcus suis 98HAH33]
gi|292559420|gb|ADE32421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus suis GZ1]
Length = 423
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 163 LDYAMNLGADYVATGHYAQVTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 222
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P++ E GI E G +L G G+ +
Sbjct: 223 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTVDGRDMGE 282
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 283 HTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQ 342
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E V +E + + GQ F
Sbjct: 343 VHFTRDMPEEFTLECTAKFRYRQPDSQVTVKVKGDKAE----VIFAEPQRAITPGQAVVF 398
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G+ CLG G+I A+ D
Sbjct: 399 YDGQECLGGGMIDMAYKD 416
>gi|110005181|emb|CAK99508.1| probable trna 5-methylaminomethyl-2-thiouridylate-methyltransferase
protein [Spiroplasma citri]
Length = 377
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 59/258 (22%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
AI++ D++A GHYA V + + KDQTYFLS L+Q QL + F L
Sbjct: 121 AINNYHADFIAMGHYARVRFNEELQEYQLLRGIDRDKDQTYFLSQLNQGQLSKTFFPLGN 180
Query: 56 ----------------------------------VLYPRLTIP-MEGIILEAETGDFLEK 80
++ + IP +G I++ ET + +
Sbjct: 181 LTKKEVREIAMTQNLSTANKKDSTGICFIGERDFKIFLQNYIPNQDGNIVDIETKEVVGH 240
Query: 81 HRGFWFYTIGQHQELGLLYIVYRYVVE-KDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
H G +YTIGQ + L L + Y V K++E NI++V+++ +++ L+ L
Sbjct: 241 HNGVMYYTIGQRRGLNLGGMSEPYFVAGKNVEKNILYVAKS----SEEKWLYSTSCLV-- 294
Query: 140 SGLPPEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAF 191
I+ +NC+ + + ++ +VQ + + + GQ + F
Sbjct: 295 --TDVNWINTFREKEFNCTAKFRYRQKDIPVKITVLNDNKCLVQFATTVKAITPGQASVF 352
Query: 192 YQGRRCLGSGVILEAWDD 209
Y CLG GVI + + D
Sbjct: 353 YVDEVCLGGGVINDVYLD 370
>gi|126667269|ref|ZP_01738242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter sp. ELB17]
gi|126628214|gb|EAZ98838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Marinobacter sp. ELB17]
Length = 374
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 105/269 (39%), Gaps = 73/269 (27%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A+GHY D K + KDQ+YFL +S ++ R +F
Sbjct: 101 LDYAITLGADYIATGHYTRQCPLD-DGSGKAQLLKGLDDNKDQSYFLHAVSGDRIARTLF 159
Query: 54 ------------------------------------HLVLYPRLTIPMEGIILEAETGDF 77
+ + +P + +E GD
Sbjct: 160 PVGELEKPEVRRIAEAQGLVTHDKKDSTGICFIGERKFTDFLKQYLPAQPGTIETPEGDI 219
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRH--L 130
+ +H+G ++TIGQ Q LG+ + YV EKD+ N++ ++ K H L
Sbjct: 220 IGRHQGLMYHTIGQRQGLGIGGLNGYSDEPWYVAEKDLARNVLIAAQG------KNHPLL 273
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEH------CE----DGGEDIAVVQLSEDD 180
F G L+SG ++ S + C + CE DGG + VV +
Sbjct: 274 FSRG---LVSGPVDWVAAEAPSAKFRCMAKTRYRQPDQLCEVTVIDGG--VKVV-FDDAQ 327
Query: 181 QGLAAGQFAAFYQGRRCLGSGVILEAWDD 209
+ + GQ A FY G CLG GVI W D
Sbjct: 328 RAVTPGQSAVFYDGEICLGGGVIEHTWRD 356
>gi|336065914|ref|YP_004560772.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Erysipelothrix rhusiopathiae str. Fujisawa]
gi|334295860|dbj|BAK31731.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelothrix rhusiopathiae str. Fujisawa]
Length = 372
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 62/259 (23%)
Query: 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR- 60
D + + F+ +A+GHYA + ++ KDQTYFLS + L R++F L +
Sbjct: 118 DFMDANGFEALATGHYA-ITRDGKMYRAVDQNKDQTYFLSRVRPEVLPRVLFPLGSLTKD 176
Query: 61 --------LTIPM----------------------------EGIILEAETGDFLEKHRGF 84
L +P+ EG I++ +T L KH+G
Sbjct: 177 EVRRIALELDLPVATKKDSTGICFIGERQYRDFLKNYLKDVEGDIIDVDTQKVLGKHQGV 236
Query: 85 WFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP 143
FYTIGQ L + V +VV KD+ N ++V + D A + ++
Sbjct: 237 MFYTIGQRHGLDISTAVGPWFVVGKDLSTNRIYVGKGA---DHPMLFAGAAEIAEINWFA 293
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAV-----------VQLSEDDQGLAAGQFAAFY 192
EK+ C+ + + +DI V V++ +D + + GQ A FY
Sbjct: 294 DEKVD------LECTAKFRYRQ---KDIKVRISWLDETRLRVEMIDDVKSVTLGQEAVFY 344
Query: 193 QGRRCLGSGVILEAWDDQG 211
G CLG G I +D G
Sbjct: 345 LGEACLGGGRIDRVFDTNG 363
>gi|342216617|ref|ZP_08709264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Peptoniphilus sp. oral taxon 375 str. F0436]
gi|341587507|gb|EGS30907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Peptoniphilus sp. oral taxon 375 str. F0436]
Length = 366
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 103/258 (39%), Gaps = 58/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D+ ++ DY+A GHYA S + KDQTYFLS LSQ QL++ IF +
Sbjct: 107 LDSAMNLGADYIAMGHYAQTSRDSEGKVHLLRGADDNKDQTYFLSQLSQDQLQKAIFPIG 166
Query: 57 LYPRLTIPMEGIILEAETGD------------------------------------FLEK 80
+ + L+ T D + K
Sbjct: 167 DLTKAQVRAIAKDLDLATADKKDSTGVCFIGERNFNEFLANYLPNQPGQMVTLDGKVMGK 226
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRH--LFH-- 132
H G +YTIGQ Q LG+ +V+ KD++ ++V + K H LF
Sbjct: 227 HNGLMYYTIGQRQGLGIGGGGESGEPWFVIGKDLKTKTLYVGQG------KNHPNLFSDS 280
Query: 133 --AGSLKLLSGLPP-EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
A L + G P + V Y H + G D A+V + +G+ GQ
Sbjct: 281 CLASDLNFIQGQAPGDSFDCTVKVRYRQKDVPAHVDLRG-DKALVHFKDKVRGVTPGQAV 339
Query: 190 AFYQGRRCLGSGVILEAW 207
FYQG+ CLG G+I EA+
Sbjct: 340 VFYQGQECLGGGLIDEAY 357
>gi|414565016|ref|YP_006043977.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338848081|gb|AEJ26293.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 373
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 106/265 (40%), Gaps = 67/265 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV----------KDQTYFLSHLSQAQLRR 50
+D ++ DYVA+GHYA + +D+ V KDQTYFLS LSQ QL++
Sbjct: 113 LDYAMTLGADYVATGHYAQI------KRDENGVVHMLRGLDKGKDQTYFLSQLSQEQLQK 166
Query: 51 LIFHL-------------------------------------VLYPRLTIPMEGIILEAE 73
+F L R +G ++ +
Sbjct: 167 TMFPLGHLQKSEVRAIAEQAGLATAKKKDSTGICFIGEKNFKTFLSRYLPAQKGRMMTVD 226
Query: 74 TGDFLEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKR 128
D E H G +YTIGQ LG+ +VV KD+ NI++V + +Y
Sbjct: 227 GRDMGE-HAGLMYYTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMS 285
Query: 129 HLFHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLA 184
A ++ +P E + + F + +T+ H + +D A V +E + +
Sbjct: 286 TSLDASVIQFTREVPEEFTLECTAKFRYRQPDSKVTV-HVK---KDKAKVVFAEPQRAIT 341
Query: 185 AGQFAAFYQGRRCLGSGVILEAWDD 209
GQ FY G CLG G+I A+ D
Sbjct: 342 PGQAVVFYDGHECLGGGIIDMAYKD 366
>gi|417091916|ref|ZP_11956650.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis R61]
gi|353532485|gb|EHC02154.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis R61]
Length = 374
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 114 LDYAMNLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 173
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P++ E GI E G +L G G+ +
Sbjct: 174 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTVDGRDMGE 233
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 234 HTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQ 293
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E I V E + + GQ F
Sbjct: 294 VHFTRDMPEEFTLECTAKFRYRQPDSQVTVKVKGDKAEVIFV----EPQRAITPGQAVVF 349
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G+ CLG G+I A+ D
Sbjct: 350 YDGQECLGGGMIDMAYKD 367
>gi|322386456|ref|ZP_08060085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus cristatus ATCC 51100]
gi|417921469|ref|ZP_12564960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus cristatus ATCC 51100]
gi|321269542|gb|EFX52473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus cristatus ATCC 51100]
gi|342834152|gb|EGU68427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus cristatus ATCC 51100]
Length = 373
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 105/258 (40%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GII--------------LEAETGDFLE-------K 80
+ P + E GI L A+ G + +
Sbjct: 173 HLEKPEVRAVAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTMDGRDMGQ 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNEPWFVVGKDLSQNILYVGQGFYHDHLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D A+V + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAIVNFDQPQRAVTPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGEECLGGGLIDRAY 364
>gi|450106101|ref|ZP_21860292.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SF14]
gi|449223579|gb|EMC23258.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SF14]
Length = 373
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 108/267 (40%), Gaps = 59/267 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DY+A+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYMATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ PR+ E GI E ++L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V E + + GQ
Sbjct: 291 SQVHFTRNMPDEFTLECTAKFRYRQADSKVTVKVKGDKAE----VIFDEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCK 216
FY G CLG G+I A+ ++ VC+
Sbjct: 347 VFYDGEECLGGGLIDNAYKEE--KVCQ 371
>gi|418963822|ref|ZP_13515654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus anginosus subsp. whileyi CCUG 39159]
gi|383342555|gb|EID20768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus anginosus subsp. whileyi CCUG 39159]
Length = 373
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 69/266 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV----------KDQTYFLSHLSQAQLRR 50
+D ++ DYVA+GHYA V +D+ + KDQTYFLS LSQ QL++
Sbjct: 113 LDYAMTLGADYVATGHYARV------KRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQK 166
Query: 51 LIFHLVLYPRLTIPM---------------EGIILEAET------GDFLEKHRGFWFYTI 89
+F L + + GI E G++L G
Sbjct: 167 TMFPLGHLEKSEVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTVN 226
Query: 90 GQH--QELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRH 129
G+ + GL+Y +VV KD+ NI++V + +Y +
Sbjct: 227 GRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMST 286
Query: 130 LFHAGSLKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGL 183
A + +P E + + F ++T++ +D A+V +E + +
Sbjct: 287 SLDASQVHFTREMPAEFTMECTAKFRYRQPDSKVTVTVK------DDKAIVNFAEPQRAI 340
Query: 184 AAGQFAAFYQGRRCLGSGVILEAWDD 209
GQ FY CLG G+I A+ D
Sbjct: 341 TPGQAVVFYDEEECLGGGLIDNAYKD 366
>gi|383857783|ref|XP_003704383.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
[Megachile rotundata]
Length = 398
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 98/258 (37%), Gaps = 60/258 (23%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKP-----------SVKDQTYFLSHLSQAQLRRL 51
A +++ D +A+GHYA KP KDQT+FLS + + L+
Sbjct: 112 ARDNLKADAIATGHYAKTSFGPYLEHFKPLENVKLLKAQDEEKDQTFFLSQIPETALKFC 171
Query: 52 IFHLVLYPRLTIPM--------------------------------------EGIILEAE 73
+F L Y + + G ++ +
Sbjct: 172 MFPLGEYLKSRVKQIAQEADLNFIAQKKESMGICFIGKREFQHFISQYIPDKPGNFVDLD 231
Query: 74 TGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
+G + +H+GF +T+GQ LG L Y ++ +KD N + V
Sbjct: 232 SGQVVGEHKGFHHWTVGQKIRLGGLDSSY-FIYQKDTTTNDIIVVPGTNHPALYSDFIRT 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCED--------GGEDIAVVQLSEDDQGLAA 185
+ +SG PPE +S + +C +H E D ++QLS+ + +
Sbjct: 291 EAPHWISGKPPELMSP--ARIMHCDFRFQHREPVIPCTVHMTLHDQLIIQLSQPLRAITN 348
Query: 186 GQFAAFYQGRRCLGSGVI 203
GQFA Y+G CLGS VI
Sbjct: 349 GQFAVLYKGEECLGSAVI 366
>gi|423452306|ref|ZP_17429159.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5X1-1]
gi|401139944|gb|EJQ47501.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG5X1-1]
Length = 371
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S E
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVEQGFHNELLYGDEVIATNVGWVSNKAKETEFT 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|116628661|ref|YP_821280.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus
LMD-9]
gi|122266745|sp|Q03I88.1|MNMA_STRTD RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116101938|gb|ABJ67084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus thermophilus LMD-9]
Length = 373
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 104/260 (40%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKAMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYT----IGQ 91
HL I + A+ D +L +G +G+
Sbjct: 173 HLQKSEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
++ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 STIHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKSE----VIFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|90961839|ref|YP_535755.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius UCC118]
gi|122449023|sp|Q1WTT7.1|MNMA_LACS1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|90821033|gb|ABD99672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius UCC118]
Length = 375
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D S++ DY+A GHYA + + KDQTYFLS LSQ QL++++F
Sbjct: 113 LDYAMSIDADYIAMGHYAQLRRDEDGRVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIG 172
Query: 54 HLVLYPRLTIPME--------------------------GIILEAETGDFLE-------K 80
HL I E G L A+ G+ +
Sbjct: 173 HLQKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLPAQPGEMVTLDGEVKGN 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G YTIGQ + LG+ +V+ KD++ N + V + Y++ HL+ A SL
Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHN----EHLY-ANSL 287
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGG------EDIAVVQLSEDD--QGLAAGQF 188
+ IS F+ + +D G ED V++ D+ + + GQ
Sbjct: 288 DASKLSFVDDISDCGDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQE 347
Query: 189 AAFYQGRRCLGSGVILEAW 207
FY G CLGSG I A+
Sbjct: 348 VVFYDGEECLGSGTIDHAY 366
>gi|30248966|ref|NP_841036.1| tRNA-specific 2-thiouridylase MnmA [Nitrosomonas europaea ATCC
19718]
gi|81584700|sp|Q82VV0.1|MNMA_NITEU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|30138583|emb|CAD84874.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
protein [Nitrosomonas europaea ATCC 19718]
Length = 362
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 103/256 (40%), Gaps = 51/256 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---H 54
+D ++ D++A+GHYA V + K + KDQ+YFL L+Q QL IF H
Sbjct: 110 LDHALNLGADWIATGHYAQVHETDGLFQLLKGEDGNKDQSYFLYRLNQQQLSHTIFPIGH 169
Query: 55 LVLYPRLTIPME------------GII--------------LEAETGDF-------LEKH 81
L I E GI L A G+ + +H
Sbjct: 170 LYKREVRKIAREHRLPNSTKKDSTGICFIGERPFREFLNRYLPANPGEIHTLDDQVVGEH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +YTIGQ Q LG+ +V KDI+ N+++V + + R A L
Sbjct: 230 LGVMYYTIGQRQGLGIGGTRQGSEQPWFVSGKDIKKNVLYVVQGHDHPALLRSSLTAADL 289
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+SG PP + +++ + I H E D + + G+ GQ Y
Sbjct: 290 SWISGTPPHQNWVYAAKIRYRQTDAPCAITHFE---HDSCQIGFAAPQWGITPGQSVVVY 346
Query: 193 QGRRCLGSGVILEAWD 208
+ + CLG GVI+ + D
Sbjct: 347 ESKVCLGGGVIIGSND 362
>gi|26554279|ref|NP_758213.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Mycoplasma penetrans HF-2]
gi|30173413|sp|Q8CXQ3.1|MNMA_MYCPE RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|26454288|dbj|BAC44617.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Mycoplasma penetrans HF-2]
Length = 370
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 99/248 (39%), Gaps = 58/248 (23%)
Query: 6 SMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60
+ + DY+A+GHYA+V + A++ + K KDQTYFL L+Q+QL + IF L +
Sbjct: 125 NFDCDYIATGHYADVRFNQANNIYELLEAKDIEKDQTYFLCSLNQSQLSKSIFPLADLTK 184
Query: 61 LTI-------------------------------------PMEGIILEAETGDFLEKHRG 83
+ G I++ +T + H G
Sbjct: 185 KEVREIANKIGLDNWDKKDSTGICFIGERNFKNFLHNYIDKKPGKIIDIDTSKEVGTHEG 244
Query: 84 FWFYTIGQHQELGLLYIVYRY-VVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
FYTIGQ + L L RY V +KDI NNI++V+ N + S G
Sbjct: 245 IHFYTIGQRKGLNLGGNSSRYFVCKKDISNNILYVTSNESKLKNLSSVVATCSYFNWIGY 304
Query: 143 PPEKISQLHSVFYNCSLTIEHCE---DGGEDI---AVVQLSEDD-QGLAAGQFAAFYQGR 195
P + I H + +G I VVQ D + ++ GQ+ YQ
Sbjct: 305 VPNN--------NKVEIRIRHSKNKINGHFKILKDNVVQFEFDSPEVISPGQYIVAYQKG 356
Query: 196 RCLGSGVI 203
CLG G I
Sbjct: 357 VCLGGGPI 364
>gi|423470612|ref|ZP_17447356.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6O-2]
gi|402436278|gb|EJV68310.1| tRNA-specific 2-thiouridylase mnmA [Bacillus cereus BAG6O-2]
Length = 371
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 47/242 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA V + ++K V KDQTYFL+ LSQ QL + +F L + P++
Sbjct: 123 DYVATGHYARVAYMDGEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLGELKKPQIREM 182
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + +++ +G+ KH G +YTIG
Sbjct: 183 ATEAGLATAAKKDSTGICFIGERNFKDFLSNYLPAQPGVMQTLSGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q LG+ + V K+++ NI++V + +++ A ++ +S E
Sbjct: 243 QRHGLGIGGNGDPWFAVGKNLKENILYVEQGFHNELLYGDEVIATNVGWVSNKAKETEFT 302
Query: 150 LHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ F + +T++ + E+ + E + + GQ FY G CLG I E
Sbjct: 303 CTAKFRYRQADNKVTVQIVD---ENTVRILCDEPIRAITPGQAVVFYDGDECLGGATIDE 359
Query: 206 AW 207
+
Sbjct: 360 VY 361
>gi|262281666|ref|ZP_06059435.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA]
gi|262262120|gb|EEY80817.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA]
Length = 373
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 103/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAVTPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I +A+
Sbjct: 347 VFYDGDECLGGGLIDKAY 364
>gi|148377683|ref|YP_001256559.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma agalactiae PG2]
gi|205816906|sp|A5IYK6.1|MNMA_MYCAP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|148291729|emb|CAL59115.1| TRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase
[Mycoplasma agalactiae PG2]
Length = 374
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 105/252 (41%), Gaps = 65/252 (25%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP--- 59
A +++ DY+A GHYA V ++ K KDQTYFL+ LS QL+R++ L +
Sbjct: 124 AFNNLGADYIAMGHYAKVTDGRL-YRAKDQNKDQTYFLAQLSHEQLKRVLMPLAEFSSKE 182
Query: 60 ----------------------------RLT------IPME-GIILEAETGDFLEKHRGF 84
+ T IPM+ G I++ T L KH G
Sbjct: 183 EVRKIAQEQDLITASKKDSTGICFIGERKFTKFLQNYIPMQPGDIVDIRTNKKLGKHEGC 242
Query: 85 WFYTIGQHQELGLLYIVY-RYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL-SGL 142
++YTIGQ + L L YV D++ NI++V+ + L + S LL +GL
Sbjct: 243 FYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVAPS-------SDLSYLTSDALLATGL 295
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAV-----------VQLSEDDQGLAAGQFAAF 191
H+ N S + + +DI V V + Q + GQ
Sbjct: 296 TLNHDDFDHN---NLSAKFRYRQ---QDIPVTIELLPNNTIKVYYPSESQAVTPGQQVVL 349
Query: 192 YQGRRCLGSGVI 203
Y+G++CLG VI
Sbjct: 350 YEGQKCLGGAVI 361
>gi|422857280|ref|ZP_16903930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1057]
gi|327463811|gb|EGF10127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1057]
Length = 373
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 98/254 (38%), Gaps = 57/254 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 --------VLYPRLTIPM------EGIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ R + GI E G +L G G+ Q
Sbjct: 173 HLEKTEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAVTPGQAV 346
Query: 190 AFYQGRRCLGSGVI 203
FY G CLG G+I
Sbjct: 347 VFYDGDECLGGGLI 360
>gi|421474872|ref|ZP_15922876.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia multivorans CF2]
gi|400231298|gb|EJO61001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Burkholderia multivorans CF2]
Length = 376
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 49/250 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D S+ + +A+GHYA V K KDQ+YFL L+QAQL + +F L
Sbjct: 105 LDHAMSLGAETIATGHYARVRERDGRFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGE 164
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
P+ + P + ++ G + +H
Sbjct: 165 IPKTKVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPMKTPDGKLVGEH 224
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNY-YSFDKKRHLFHAGS 135
G FYT GQ + +GL +V KDI +N ++V + + + + R L AG+
Sbjct: 225 IGLAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELV-AGN 283
Query: 136 LKLLSGLPPEK--ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
+ ++G PP + + + GGE ++ ++ + GQ A Y
Sbjct: 284 VSWIAGEPPAEGFACGAKTRYRQADAACTFARAGGERFSLA-FADAQWAVTPGQSAVLYD 342
Query: 194 GRRCLGSGVI 203
G CLG G+I
Sbjct: 343 GEICLGGGII 352
>gi|456064109|ref|YP_007503079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta
proteobacterium CB]
gi|455441406|gb|AGG34344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta
proteobacterium CB]
Length = 384
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 97/254 (38%), Gaps = 56/254 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D S+ D +A+GHYA V H K + KDQ+YFL L+QAQL ++F L
Sbjct: 134 LDHAMSLGADAIATGHYARVRHHGGRVQLLKALDASKDQSYFLHRLTQAQLTNVLFPLGE 193
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
P+ + P ++ G + +H
Sbjct: 194 IPKTEVRQIAEQIGLHNARKKDSTGICFIGERPFREFLNRYLPRTPGPIKTPEGKTVGEH 253
Query: 82 RGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G F+T+GQ + +GL YV KD+ NN ++V++ + + A
Sbjct: 254 MGLAFFTLGQRKGIGLGGSQDGNGDAWYVARKDVANNTLYVAQGHEHPWLLANQLTAIDA 313
Query: 137 KLLSGLPPEKISQLHSVFYN-----CSLTIEHCEDGGEDIAVVQLS--EDDQGLAAGQFA 189
++G+ P Y CSLT G E +L+ E + GQ A
Sbjct: 314 SWVAGVAPTPGQYSAKTRYRQTDSACSLTA-----GAEGPLSFELAFPESQWAVTPGQSA 368
Query: 190 AFYQGRRCLGSGVI 203
Y G CLG G+I
Sbjct: 369 VLYDGDVCLGGGII 382
>gi|424788749|ref|ZP_18215499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus intermedius BA1]
gi|422112529|gb|EKU16316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus intermedius BA1]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDEDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD--------------FLEKH------RGFWFYTIGQHQ 93
HL I + + A+ D FL ++ R F Q
Sbjct: 173 HLEKPEVRAIAKKAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTFEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P + + + F ++T++ D A V +E + + GQ
Sbjct: 293 VHFTKEMPEKFTMECTAKFRYRQPDSKVTVTVKG------DKATVNFAELQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGEECLGGGLIDNAY 364
>gi|422861136|ref|ZP_16907778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK330]
gi|327467648|gb|EGF13145.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK330]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 104/258 (40%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|344207386|ref|YP_004792527.1| tRNA-specific 2-thiouridylase mnmA [Stenotrophomonas maltophilia
JV3]
gi|343778748|gb|AEM51301.1| tRNA-specific 2-thiouridylase mnmA [Stenotrophomonas maltophilia
JV3]
Length = 380
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 99/252 (39%), Gaps = 52/252 (20%)
Query: 1 MDAISSMEFDYVASGHYANVV---HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+DA + + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGD 168
Query: 56 ------------VLYP-----------------------RLTIPMEGIILEAETGDFLEK 80
V P R G IL+ G + +
Sbjct: 169 LEKSDLRRIARDVGLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAE 228
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 HPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSQWMLSERLRSET 288
Query: 136 LKLLSGLPP----EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
++G PP E +Q + T+E +DG +V + + + GQ
Sbjct: 289 AHWIAGSPPARRFECTAQTRYRQPDEPCTVEVLDDGS---VLVTFARPQRAVTPGQSLVL 345
Query: 192 YQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 346 YDGDVCLGGAVI 357
>gi|289666030|ref|ZP_06487611.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 378
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAHRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + +H
Sbjct: 169 LEKSTLRRTAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + T++ +DG V + + GQ Y
Sbjct: 289 HWVTGAPPARRFSCTAQTRYRQPDEPCTVDVQDDGS---VKVHFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G CLG VI
Sbjct: 346 DGEECLGGAVI 356
>gi|374338990|ref|YP_005095710.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus macedonicus ACA-DC 198]
gi|372285110|emb|CCF03448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus macedonicus ACA-DC 198]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 108/261 (41%), Gaps = 63/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D ++ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL+++
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDEDGTVHMLRGADNN-----KDQTYFLSQLSQEQLQKV 167
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F L + P + E GI L A+ G +
Sbjct: 168 MFPLGHLEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTVDG 227
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+H G +YTIGQ LG+ +VV KD+ NI++V + +Y
Sbjct: 228 RDMGEHAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTS 287
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A S+ +P E ++ + F + +T+ D E V E + + G
Sbjct: 288 LDASSIHFTRHMPEEFTMEVTAKFRYRQPDSKVTVHVKGDKAE----VVFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAW 207
Q FY G CLG G+I A+
Sbjct: 344 QAVVFYDGEECLGGGIIDIAY 364
>gi|450122227|ref|ZP_21866672.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans ST6]
gi|449228185|gb|EMC27565.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans ST6]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 111/268 (41%), Gaps = 61/268 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
+D ++ DYVA+GHYA V AD + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQV-SCDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPL 171
Query: 56 --VLYPRLT-IPMEGIILEAETGD------------------FLEKHRGFWFYT----IG 90
+ PR+ I + ++ A+ D +L +G +G
Sbjct: 172 GHLQKPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMG 231
Query: 91 QHQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFH 132
+H GL+Y +VV KD+ NI++V + +Y
Sbjct: 232 EHN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLT 289
Query: 133 AGSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
A + +P E + + F + +T++ D E V E + + GQ
Sbjct: 290 ASQVHFTRNMPDEFTLECTAKFRYRQADSKVTVKVKGDKAE----VIFDEPQRAITPGQA 345
Query: 189 AAFYQGRRCLGSGVILEAWDDQGFPVCK 216
FY G CLG G+I A+ ++ VC+
Sbjct: 346 VVFYYGEECLGGGLIDNAYKEE--KVCQ 371
>gi|319946006|ref|ZP_08020255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus australis ATCC 700641]
gi|417919165|ref|ZP_12562705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus australis ATCC 700641]
gi|319747814|gb|EFW00059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus australis ATCC 700641]
gi|342834542|gb|EGU68809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus australis ATCC 700641]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME---------------------------GIILEAETGDFLE-------K 80
+ P + E G L A+ G + +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTVDGRDMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVTFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|422822837|ref|ZP_16871026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK405]
gi|422825200|ref|ZP_16873379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK678]
gi|422856267|ref|ZP_16902924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1]
gi|422863829|ref|ZP_16910459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK408]
gi|422864821|ref|ZP_16911446.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1058]
gi|324991889|gb|EGC23812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK405]
gi|324996221|gb|EGC28131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK678]
gi|327458514|gb|EGF04864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1]
gi|327471584|gb|EGF17027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK408]
gi|327490314|gb|EGF22101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1058]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 100/258 (38%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E +L G G+ Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTMEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAVTPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|157150902|ref|YP_001449344.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gordonii str.
Challis substr. CH1]
gi|189040513|sp|A8AU84.1|MNMA_STRGC RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|157075696|gb|ABV10379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gordonii str. Challis substr. CH1]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL +I + A+ D +L G G+ Q
Sbjct: 173 HLEKPEVRSIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|301301190|ref|ZP_07207346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|385840454|ref|YP_005863778.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus salivarius CECT
5713]
gi|417788361|ref|ZP_12436044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius NIAS840]
gi|418961392|ref|ZP_13513279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius SMXD51]
gi|300214575|gb|ADJ78991.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus salivarius CECT
5713]
gi|300851189|gb|EFK78917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|334308538|gb|EGL99524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius NIAS840]
gi|380345059|gb|EIA33405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius SMXD51]
Length = 375
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D S++ DY+A GHYA + + KDQTYFLS LSQ QL++++F
Sbjct: 113 LDYAMSIDADYIAMGHYAQLRRDEDGRVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIG 172
Query: 54 HLVLYPRLTIPME--------------------------GIILEAETGDFLE-------K 80
HL I E G L A+ G+ +
Sbjct: 173 HLQKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLPAQPGEMVTLDGEVKGN 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G YTIGQ + LG+ +V+ KD++ N + V + Y++ HL+ A SL
Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHN----EHLY-ANSL 287
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGG------EDIAVVQLSEDD--QGLAAGQF 188
+ IS F+ + +D G ED V++ D+ + + GQ
Sbjct: 288 DASKLSFVDDISDRGDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQE 347
Query: 189 AAFYQGRRCLGSGVILEAW 207
FY G CLGSG I A+
Sbjct: 348 VVFYDGEECLGSGTIDHAY 366
>gi|258546108|ref|ZP_05706342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cardiobacterium hominis ATCC 15826]
gi|258518660|gb|EEV87519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Cardiobacterium hominis ATCC 15826]
Length = 369
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 101/247 (40%), Gaps = 63/247 (25%)
Query: 10 DYVASGHYANV-VHSSAD--HKDKPSVKDQTYFLSHLSQAQLRRLIFHL----------- 55
DY+A+GHYA H A +K KDQ+YFLS ++ AQL + +F L
Sbjct: 125 DYLATGHYARRGTHHGAPALYKGVDGSKDQSYFLSQITPAQLDKALFPLGGMAKSDVRRI 184
Query: 56 ------VLYPRLTIPMEGIILEAETGDFLE-------------------KHRGFWFYTIG 90
V Y + I E DFL +H G +YTIG
Sbjct: 185 AEQAGLVTYDKKDSTGICFIGERPFRDFLANYFENKPGKMITPQGVWVGEHIGLMYYTIG 244
Query: 91 QHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFH----AGSLKLLSG 141
Q Q LG+ I YV++K+ +N + V + + L+H A L L+
Sbjct: 245 QRQGLGIGGIAGASEEPWYVLDKNPADNTLIVGQGEHPL-----LYHDTLTARQLAWLNE 299
Query: 142 LPPE-KISQLHSVFYN----CSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
P ++ Q + + C +T + GED VQ E + + GQ+ Y G R
Sbjct: 300 APEAGRVYQAKTRYRQPDQPCRITWQ-----GEDEITVQFDEPQRAITPGQYLVLYDGER 354
Query: 197 CLGSGVI 203
CLG GVI
Sbjct: 355 CLGGGVI 361
>gi|332529592|ref|ZP_08405548.1| tRNA-specific 2-thiouridylase MnmA [Hylemonella gracilis ATCC
19624]
gi|332040942|gb|EGI77312.1| tRNA-specific 2-thiouridylase MnmA [Hylemonella gracilis ATCC
19624]
Length = 386
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 107/276 (38%), Gaps = 75/276 (27%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDK------PSVKDQTYFLSHLSQAQLRRLIF- 53
+D + + +A+GHYA V + K + PS KDQ+YFL L+QAQL + +F
Sbjct: 114 LDHAMRLGAEKIATGHYARVRLNEKTGKHELLKGLDPS-KDQSYFLHRLNQAQLSKTLFP 172
Query: 54 ----HLVLYPRLT------------------------------------------IPMEG 67
H R+ P+ G
Sbjct: 173 VGELHKTEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYIQKEPGPIKDGTPLPG 232
Query: 68 II-LEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYR------------YVVEKDIENNI 114
E G + KH G FYT+GQ Q LG+ I + +V KD++ N
Sbjct: 233 SPDYERAHGRVIGKHVGLSFYTLGQRQGLGIGGIKDKGAQKGGGEHEPWFVARKDMDKNQ 292
Query: 115 VFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGED 170
++V + + + H HA ++G PP LH+ + + T++H ED G
Sbjct: 293 LWVVQGHDHPLLQSHGLHALDASWIAGEPPLP-GDLHAKARYRQADAACTLDHVEDSGFS 351
Query: 171 IAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206
+ + E + GQ A Y G CLG G++ +A
Sbjct: 352 L---RFPEAQWAVTPGQSAVLYDGEVCLGGGIVQQA 384
>gi|406915746|gb|EKD54798.1| hypothetical protein ACD_60C00044G0017 [uncultured bacterium]
Length = 362
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 46/240 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI------ 63
DY+A+GHYA ++S K + KDQ+YFL L Q QL +F L + ++
Sbjct: 122 DYIATGHYARKQNTSELLKGRDLNKDQSYFLYALDQEQLAHSLFPLGDLTKESVRKLAAK 181
Query: 64 ------------------------------PMEGIILEAETGDFLEKHRGFWFYTIGQHQ 93
P + ++E G + +H G FYT GQ Q
Sbjct: 182 AGFKNHAKKDSTGICFIGERKFKTFLNDYLPSKPGVIETTDGTIVGQHDGLMFYTHGQRQ 241
Query: 94 ELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG-LP--PE 145
L + + YVV+KD+ N++ V++ + H A + +SG LP P
Sbjct: 242 GLKIGGLKNSSEAPWYVVKKDLIRNVLIVAQGAENPLLYAHSLIANQIHWISGNLPAFPL 301
Query: 146 KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
IS I + D E + E + + GQ FY+G CLG G+I++
Sbjct: 302 TISAKTRYRQKDQACIIYPLD--EKQYKIDFKEPQRAITPGQSVVFYEGDACLGGGIIIK 359
>gi|410697852|gb|AFV76920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Thermus oshimai JL-2]
Length = 365
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 95/236 (40%), Gaps = 50/236 (21%)
Query: 7 MEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV------L 57
+ DYVA+GHY + P KDQ+YFL + L L+F HL L
Sbjct: 124 LGLDYVATGHYVRREGEALLRGLDPE-KDQSYFLWGTPKEALPHLLFPVGHLTKKEVRAL 182
Query: 58 YPRLTIPM---------------------------EGIILEAETGDFLEKHRGFWFYTIG 90
R +P G I++A TG+ + +H G YTIG
Sbjct: 183 AERAGLPTARKPESQNLCFVAGDLKGFLQERLKTRPGPIVDALTGEVVGEHLGASLYTIG 242
Query: 91 QHQELGLLYI-VYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q + LGL + RYVV D + N+V+V + + A + LL+ LP
Sbjct: 243 QRKGLGLFKSHLERYVVGVDPKANVVYVGPREAALWEG---LEAHGVNLLAELP------ 293
Query: 150 LHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQ--GLAAGQFAAFYQGRRCLGSGVI 203
+V E +A ++L + +A GQ A FYQG R LG GVI
Sbjct: 294 -EAVEVQVRYRTPPVRAKVESLAPLRLRFEKPLFAVAPGQSAVFYQGERLLGGGVI 348
>gi|422822758|ref|ZP_16870951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK353]
gi|324989555|gb|EGC21501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK353]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAVVNFDKPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|386718493|ref|YP_006184819.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Stenotrophomonas maltophilia D457]
gi|384078055|emb|CCH12644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Stenotrophomonas maltophilia D457]
Length = 375
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 99/252 (39%), Gaps = 52/252 (20%)
Query: 1 MDAISSMEFDYVASGHYANVV---HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+DA + + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 104 LDAARELGAERIATGHYARVAQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGD 163
Query: 56 ------------VLYP-----------------------RLTIPMEGIILEAETGDFLEK 80
V P R G IL+ G + +
Sbjct: 164 LEKSDLRRIARDVGLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAE 223
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 224 HPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSDRLRSET 283
Query: 136 LKLLSGLPP----EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
++G PP E +Q + T+E +DG +V + + + GQ
Sbjct: 284 AHWIAGSPPARRFECTAQTRYRQPDEPCTVEVLDDGS---VLVTFARPQRAVTPGQSLVL 340
Query: 192 YQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 341 YDGDVCLGGAVI 352
>gi|313899166|ref|ZP_07832687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium sp. HGF2]
gi|312956035|gb|EFR37682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium sp. HGF2]
Length = 393
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 57/253 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
MD + FD +A+GHYA V HS+ + + + KDQTYFL +SQ LR +F +
Sbjct: 126 MDYARRLGFDTLATGHYAQVDHSAEESRMLRGADNNKDQTYFLCQVSQDALRHSMFPIGH 185
Query: 56 -------VLYPRLTI-----------------------------PMEGIILEAETGDFLE 79
+ R+ + +G I++ +T + +
Sbjct: 186 MEKQEVREIAERMELNSVAEKKDSTGICFIGERNFKEFLKNYLPSRDGDIMDIKTLEVVG 245
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
+H G +YTIGQ + LG+ +VV KD++ NI++V+ S H+ S +
Sbjct: 246 RHSGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSES-----DWLHSDSC-I 299
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGG--------EDIAVVQLSEDDQGLAAGQFAA 190
+SG+ S+ Y C+ + + E ++ + + AGQ A
Sbjct: 300 VSGVNWFS-SERPQGDYVCTAKFRYRQPDNDVILRFIDETTVFLRYPQMVSSVTAGQEAV 358
Query: 191 FYQGRRCLGSGVI 203
FYQ CLG GVI
Sbjct: 359 FYQKEECLGGGVI 371
>gi|449988479|ref|ZP_21820512.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NVAB]
gi|449184048|gb|EMB86011.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NVAB]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 106/264 (40%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ PR+ E GI E ++L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSNSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAG 186
+ +P +K + NC+ + + + D A V E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYNGDECLGGGLIDNAYQEE 367
>gi|357011670|ref|ZP_09076669.1| MnmA [Paenibacillus elgii B69]
Length = 363
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 57/244 (23%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V + + S KDQTYFL L+Q QL + +F + P+ +
Sbjct: 122 DYIATGHYARVEERDGKYHLLRGVDSNKDQTYFLHALNQYQLSKAMFPIGHLPKPEVRAI 181
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + + G+ +H G +YT+G
Sbjct: 182 AEKAGLATAKKKDSTGVCFIGERNFKEFLSGYLPAKPGEMRTLEGEVKGRHDGLMYYTLG 241
Query: 91 QHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAG----SLKLLSGLP 143
Q Q LG+ +V KD+E NI++V + +K L+ G L ++G P
Sbjct: 242 QRQGLGIGGSGSGEPWFVAGKDLEKNILYVVQG----EKHPALYSTGLLATDLNWIAGEP 297
Query: 144 PEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P++ + F + +T+ E G +I + + + GQ FY G CLG
Sbjct: 298 PKEALHCTAKFRYRQPDQGVTVHFGEGGRCEIV---FDQPQKAITPGQSVVFYDGEVCLG 354
Query: 200 SGVI 203
VI
Sbjct: 355 GAVI 358
>gi|160931216|ref|ZP_02078618.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753]
gi|156869771|gb|EDO63143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium leptum DSM 753]
Length = 357
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 91/241 (37%), Gaps = 47/241 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR-- 60
S+E+DYVA+GHYA + + K P KDQ+Y L HL+Q QL + L +
Sbjct: 118 SLEYDYVATGHYAVITQNDEGRWLLKKAPCSKDQSYVLYHLTQHQLAHTLMPLAGMEKSE 177
Query: 61 ---------LTI----------------------------PMEGIILEAETGDFLEKHRG 83
L + P G ++ + G+ L H+G
Sbjct: 178 ARELAREAGLPVAHKPDSQEICFVQDNDYASFIRRYTGKEPPPGNFID-QAGNVLGTHKG 236
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP 143
YTIGQ + LG+ + +V + D +N V + N + AG + L+S
Sbjct: 237 ITHYTIGQRKGLGISFGKPMFVTKIDPISNTVTLGENGSQYASS---LIAGKVNLISADT 293
Query: 144 PE-KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
E IS V Y V E + + GQ A FY G LG G+
Sbjct: 294 LEAPISAQVKVRYQAPPAPARLTPLDNGKIRVDFQEPQRSVTPGQAAVFYDGDLVLGGGI 353
Query: 203 I 203
I
Sbjct: 354 I 354
>gi|227890864|ref|ZP_04008669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius ATCC 11741]
gi|227867273|gb|EEJ74694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius ATCC 11741]
Length = 375
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D S++ DY+A GHYA + + KDQTYFLS LSQ QL++++F
Sbjct: 113 LDYAMSIDADYIAMGHYAQLRRDEDGRVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIG 172
Query: 54 HLVLYPRLTIPME--------------------------GIILEAETGDFLE-------K 80
HL I E G L A+ G+ +
Sbjct: 173 HLQKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLPAQPGEMVTLDGEVKGN 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G YTIGQ + LG+ +V+ KD++ N + V + Y++ HL+ A SL
Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHN----EHLY-ANSL 287
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGG------EDIAVVQLSEDD--QGLAAGQF 188
+ IS F+ + +D G ED V++ D+ + + GQ
Sbjct: 288 DASKLSFVDDISDRGDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQE 347
Query: 189 AAFYQGRRCLGSGVILEAW 207
FY G CLGSG I A+
Sbjct: 348 VVFYDGEECLGSGTIDHAY 366
>gi|373123940|ref|ZP_09537783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 21_3]
gi|422327101|ref|ZP_16408128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 6_1_45]
gi|371660135|gb|EHO25392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 21_3]
gi|371664151|gb|EHO29332.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 6_1_45]
Length = 386
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 107/253 (42%), Gaps = 57/253 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
MD + FD +A+GHYA V HS+ + + + KDQTYFL +SQ LR +F +
Sbjct: 119 MDYARRLGFDTLATGHYAQVDHSAEESRMLRGADNNKDQTYFLCQVSQDALRHSMFPIGH 178
Query: 56 -------VLYPRLTI-----------------------------PMEGIILEAETGDFLE 79
+ R+ + +G I++ +T + +
Sbjct: 179 MEKQEVREIAERMELNSVAEKKDSTGICFIGERNFKEFLKNYLPSRDGDIMDIKTLEVVG 238
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
+H G +YTIGQ + LG+ +VV KD++ NI++V+ S H+ S +
Sbjct: 239 RHSGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSES-----DWLHSDSC-I 292
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGG--------EDIAVVQLSEDDQGLAAGQFAA 190
+SG+ S+ Y C+ + + E ++ + + AGQ A
Sbjct: 293 VSGVNWFS-SERPQGDYVCTAKFRYRQPDNDVILRFIDETTVFLRYPQMVSSVTAGQEAV 351
Query: 191 FYQGRRCLGSGVI 203
FYQ CLG GVI
Sbjct: 352 FYQKEECLGGGVI 364
>gi|380511182|ref|ZP_09854589.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas sacchari NCPPB
4393]
Length = 380
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
+DA + + +A+GHYA V + + KDQ+YFL L QAQL +F +
Sbjct: 109 LDAARELGAERIATGHYARVDCVGGRWRLLRGLDRNKDQSYFLHQLGQAQLAATLFPVGE 168
Query: 58 YPR---------LTIPME--------------------GIILEAETGDF-------LEKH 81
P+ +P G L A G+ + +H
Sbjct: 169 LPKEQVRRIAREAGLPTHAKKDSTGICFIGERDFREFLGRYLPARRGEIRDPHEQIVAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ N+++V ++ S + + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVARNVLYVDQDRDSPYLMANWLQSEAA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + T+E +DG V+ + + + GQ Y
Sbjct: 289 HWIAGAPPARRFDCTAQTRYRQADEPCTVEVGDDG---TLSVRFARPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
QG +CLG VI
Sbjct: 346 QGEQCLGGAVI 356
>gi|422882991|ref|ZP_16929440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK49]
gi|332364140|gb|EGJ41917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK49]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQEGVVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTIECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAVTPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|94984899|ref|YP_604263.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus geothermalis DSM
11300]
gi|205816613|sp|Q1J090.1|MNMA_DEIGD RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|94555180|gb|ABF45094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Deinococcus geothermalis DSM 11300]
Length = 381
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 95/236 (40%), Gaps = 44/236 (18%)
Query: 11 YVASGHYANVVH----SSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
YVA+GHY V S H+ KDQTYFL + L ++F + + PR+
Sbjct: 128 YVATGHYVKRVEREDGSVEFHRGDDPRKDQTYFLWGTPREALPFILFPVGELEKPRVREI 187
Query: 63 -------------------IP-------------MEGIILEAETGDFLEKHRGFWFYTIG 90
+P +G+I E TG+ + +H G FYT+G
Sbjct: 188 AAEKGLLTARKPESQNICFVPGKVQDFVAEHLPQRQGLIREIRTGEVVGEHLGTQFYTLG 247
Query: 91 QHQELGLLYI-VYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ 149
Q + LGL R+VV D E N V+V A L L+ LP E Q
Sbjct: 248 QKKGLGLYQTHRVRHVVHLDPETNTVWVGDYEDCLWTGLKAEGANYLLDLAELPREVEVQ 307
Query: 150 LHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ T+ H ++ G ++ Q E +A GQ A Y G R LG G+I +
Sbjct: 308 VRYRTKPVRATVLHADEHGFEL---QFEEPQFAVAPGQSAVLYAGTRLLGGGLIAD 360
>gi|335031526|ref|ZP_08524956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus anginosus SK52 = DSM 20563]
gi|333769319|gb|EGL46453.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus anginosus SK52 = DSM 20563]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 102/266 (38%), Gaps = 69/266 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV----------KDQTYFLSHLSQAQLRR 50
+D ++ DYVA+GHYA V +D+ + KDQTYFLS LSQ QL++
Sbjct: 113 LDYAMTLGADYVATGHYARV------KRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQK 166
Query: 51 LIFHLVLYPRLTIPM---------------EGIILEAET------GDFLEKHRGFWFYTI 89
+F L + + GI E G++L G
Sbjct: 167 TMFPLGHLEKSEVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTVD 226
Query: 90 GQH--QELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRH 129
G+ + GL+Y +VV KD+ NI++V + +Y +
Sbjct: 227 GRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHGNLMST 286
Query: 130 LFHAGSLKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGL 183
A + +P E + + F ++T++ D A+V +E + +
Sbjct: 287 SLDASQVHFTRKMPAEFTMECTAKFRYRQPDSKVTVTVKG------DKAIVNFAEPQRAI 340
Query: 184 AAGQFAAFYQGRRCLGSGVILEAWDD 209
GQ FY CLG G+I A+ D
Sbjct: 341 TPGQAVVFYDEEECLGGGLIDNAYKD 366
>gi|403746109|ref|ZP_10954766.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Alicyclobacillus hesperidum URH17-3-68]
gi|403120993|gb|EJY55331.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Alicyclobacillus hesperidum URH17-3-68]
Length = 384
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 99/248 (39%), Gaps = 61/248 (24%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA + H+ AD + KDQTYFL L Q LRR +F
Sbjct: 136 DYLATGHYAQL-HTGADGSVELLRGADPNKDQTYFLHTLDQEPLRRAMFPIGHLQKAEVR 194
Query: 54 HLVLYPRLT-------------------------IPMEGIILEAETGDFLEKHRGFWFYT 88
+ RL +P + I+E G+ + +H G +YT
Sbjct: 195 QIARDHRLPTAAKKDSTGICFIGERNFRQFLSTYLPAQPGIIEDVDGNRIGQHEGLMYYT 254
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP 143
IGQ + +G+ + YVV+KD+E N++ V++ A L ++G P
Sbjct: 255 IGQRRGIGIGGLQEGSGEAWYVVDKDLERNVLIVAQGQDHPRLFATRLSASRLSFVAGRP 314
Query: 144 PEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
P+ + C+ + + G D V E + + GQ FY G
Sbjct: 315 PQPD------MFRCTAKFRYRQSDQGVTVHMRGPDTCEVVFDEPQRAITPGQSVVFYDGN 368
Query: 196 RCLGSGVI 203
CLG G+I
Sbjct: 369 VCLGGGII 376
>gi|422849767|ref|ZP_16896443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK115]
gi|325689331|gb|EGD31337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK115]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTIECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAVTPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|359403786|ref|ZP_09196690.1| tRNA-specific 2-thiouridylase MnmA [Spiroplasma melliferum KC3]
gi|438120103|ref|ZP_20871883.1| tRNA-specific 2-thiouridylase MnmA [Spiroplasma melliferum IPMB4A]
gi|358833017|gb|EHK52121.1| tRNA-specific 2-thiouridylase MnmA [Spiroplasma melliferum KC3]
gi|434155200|gb|ELL44166.1| tRNA-specific 2-thiouridylase MnmA [Spiroplasma melliferum IPMB4A]
Length = 377
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 107/258 (41%), Gaps = 59/258 (22%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
AI++ D++A GHYA V + + KDQTYFLS L+Q QL + F L
Sbjct: 121 AINNYHADFIAMGHYARVRFNEELQEYQLLRGIDRDKDQTYFLSQLNQGQLSKTFFPLGN 180
Query: 56 ---------VLYPRLT-------------------------IP-MEGIILEAETGDFLEK 80
+ L+ IP +G I++ ET + +
Sbjct: 181 LTKKEVREIAMTQNLSTANKKDSTGICFIGERDFKNFLQNYIPNQDGNIVDIETKEVVGH 240
Query: 81 HRGFWFYTIGQHQELGLLYIVYRYVVE-KDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
H G +YTIGQ + L L + Y V K++E NI++V+++ +++ L+ L
Sbjct: 241 HNGVMYYTIGQRRGLNLGGMSEPYFVAGKNVEKNILYVAKS----SEEKWLYSTSCLV-- 294
Query: 140 SGLPPEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAF 191
I+ +NC+ + + ++ +V+ + + + GQ A F
Sbjct: 295 --TDVNWINTFREKEFNCTAKFRYRQKDIPVKITVLNDNKCLVEFATTVKAITPGQAAVF 352
Query: 192 YQGRRCLGSGVILEAWDD 209
Y CLG GVI + + D
Sbjct: 353 YVDEVCLGGGVINDVYLD 370
>gi|205829196|sp|B1WC37.1|MTU1_RAT RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
gi|171846652|gb|AAI61991.1| Trmu protein [Rattus norvegicus]
Length = 441
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ ++ L + YVVEKD V V+
Sbjct: 263 PRPGKFISIEDNRVLGTHKGWFLYTLGQRAKISGLSEPW-YVVEKDGTKGDVLVAPRVDH 321
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L + ++ PP +K+ + H F + C LT+ +DG +
Sbjct: 322 PALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 379
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
V+ +GLA GQFA FY+G CLGSG IL
Sbjct: 380 AVKAV---RGLALGQFAVFYKGEECLGSGKILR 409
>gi|304407559|ref|ZP_07389211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus curdlanolyticus YK9]
gi|304343510|gb|EFM09352.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Paenibacillus curdlanolyticus YK9]
Length = 376
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-- 63
DY+A+GHYA V ++ + S KDQTYFL L Q+QL + +F + P+ +
Sbjct: 123 DYLATGHYARVERTANGETKLLRGVDSNKDQTYFLHQLDQSQLAKAMFPIGDLPKPEVRR 182
Query: 64 ----------------------------------PME-GIILEAETGDFLEKHRGFWFYT 88
P + G +++ +G+ +H G +YT
Sbjct: 183 IAEEAGLATAKKKDSTGVCFIGERNFKQFLSGYLPAQPGPMIDLRSGETKGQHDGLMYYT 242
Query: 89 IGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
+GQ Q LG+ +V +KD+E NI++V + A + +S PE
Sbjct: 243 LGQRQGLGIGGSGNGEPWFVADKDLERNILYVVQGDSHARLYSERLTAEGINWISPNRPE 302
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ F + +T+ DG +A V + + + GQ FY G CLG G
Sbjct: 303 GPITCTAKFRYRQADQGVTVTLSADG---MAEVVFDQPQKAITPGQAVVFYDGDICLGGG 359
Query: 202 VI 203
I
Sbjct: 360 TI 361
>gi|304439506|ref|ZP_07399414.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372014|gb|EFM25612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Peptoniphilus duerdenii ATCC BAA-1640]
Length = 355
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 50/249 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+D + DY+A GHYA V H + + KDQ+YFLS + + L++ IF +
Sbjct: 110 LDFALKLGADYIAMGHYARVKHENGHSYLLRGVDENKDQSYFLSRVKEEALKKTIFPIGD 169
Query: 56 -----------------------------------VLYPRLTIPMEGIILEAETGDFLEK 80
+ G I++ E G+ L +
Sbjct: 170 IKKERVREIAEELNLATAKKKDSTGVCFIGERDFNKFLDKFLFTKPGKIVD-EAGNVLGE 228
Query: 81 HRGFWFYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK 137
H G YTIGQ + +G+ + +V +K++E N + V++ + R F+
Sbjct: 229 HSGLMHYTIGQRKGIGIGGVGTGEPFFVADKNLEKNELIVAQGVDNPILYRDEFYVEEPF 288
Query: 138 LLSGLPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
++G P ++ + Y + + + +D + V+L + +G+ GQ A FY G
Sbjct: 289 FINGTPDYPLNCTGKIRYRAPDVGMVVTKIDD---ETLKVKLEKPLKGVTPGQIAVFYSG 345
Query: 195 RRCLGSGVI 203
CLGSG+I
Sbjct: 346 EICLGSGII 354
>gi|422850451|ref|ZP_16897121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK150]
gi|325695737|gb|EGD37636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK150]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 99/252 (39%), Gaps = 45/252 (17%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQEGVVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ +P E + + F + D AVV + + + + GQ FY G
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVAVKGDKAVVNVDQPQRAVTPGQAVVFYDGD 352
Query: 196 RCLGSGVILEAW 207
CLG G+I A+
Sbjct: 353 ECLGGGLIDRAY 364
>gi|313889493|ref|ZP_07823139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pseudoporcinus SPIN 20026]
gi|313122105|gb|EFR45198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pseudoporcinus SPIN 20026]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V S + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYALNLGADYVATGHYAQVERDSDGRVHMLRGVDNGKDQTYFLSQLSQEQLQKTLFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL I + A+ D +L +G G+ +
Sbjct: 173 HLQKSQVREIAARADLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMKTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ N+++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNVLYVGQGFYHESLMSTSLDASM 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F +C ++++ D A V +E + + GQ F
Sbjct: 293 VHFTHDMPKEFTLECTAKFRYRQPDCKVSVKVSGDK----AKVLFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y + CLG G+I +A+ D
Sbjct: 349 YDNQECLGGGIIDQAYKD 366
>gi|125719134|ref|YP_001036267.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus sanguinis SK36]
gi|166235087|sp|A3CRB2.1|MNMA_STRSV RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|125499051|gb|ABN45717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
putative [Streptococcus sanguinis SK36]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAVVNFDKPQRAITPGQGV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|416852669|ref|ZP_11909814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pseudoporcinus LQ 940-04]
gi|356740158|gb|EHI65390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pseudoporcinus LQ 940-04]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V S + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYALNLGADYVATGHYAQVERDSDGRVHMLRGVDNGKDQTYFLSQLSQEQLQKTLFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL I + A+ D +L +G G+ +
Sbjct: 173 HLQKSQVREIAARADLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMKTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ N+++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNVLYVGQGFYHESLMSTSLDASM 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F +C ++++ D A V +E + + GQ F
Sbjct: 293 VHFTHDMPKEFTLECTAKFRYSQPDCKVSVKVSGDK----AKVLFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y + CLG G+I +A+ D
Sbjct: 349 YDNQECLGGGIIDQAYKD 366
>gi|312864108|ref|ZP_07724343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus vestibularis F0396]
gi|322515817|ref|ZP_08068761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus vestibularis ATCC 49124]
gi|311100340|gb|EFQ58548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus vestibularis F0396]
gi|322125703|gb|EFX97025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus vestibularis ATCC 49124]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 105/260 (40%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPMEGIILEA-----ETG--------------DFLEKHRGFWFYT----IGQ 91
+ P + E + L TG +L +G +G+
Sbjct: 173 HLQKPEVREIAERVGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 SMIHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKAE----VIFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|323350805|ref|ZP_08086464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis VMC66]
gi|422881114|ref|ZP_16927570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK355]
gi|322122979|gb|EFX94682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis VMC66]
gi|332365071|gb|EGJ42836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK355]
Length = 373
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 104/258 (40%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA + + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQIKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|163751230|ref|ZP_02158458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella benthica KT99]
gi|161328944|gb|EDQ00018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Shewanella benthica KT99]
Length = 376
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 51/247 (20%)
Query: 7 MEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---------- 53
++ DY+A GHY + + V KDQ+YFL LS Q+ R +F
Sbjct: 125 LDADYIAMGHYVRRCDETGQSRMLRGVDGNKDQSYFLYTLSHEQIARSLFPVGELEKSEV 184
Query: 54 --------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
+ R +P + +E G+ + KH+G ++
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTDFLRTFLPAQPGNIETAEGEVIGKHQGLMYH 244
Query: 88 TIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
T+GQ + LG+ + YVV+K+++ N++ V + F+A L +
Sbjct: 245 TLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGTHPRLMSMGFYADQLHWVDRK 304
Query: 143 PPEKISQL------HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
P +++ C+L +E+ D GED V E + GQ A FY
Sbjct: 305 GPINEARITVKTRYRQRDVACTLFLEN-NDKGEDTIRVLFDEPVAAVTPGQSAVFYSDEL 363
Query: 197 CLGSGVI 203
CLG G+I
Sbjct: 364 CLGGGII 370
>gi|377573842|ref|ZP_09802891.1| tRNA-specific 2-thiouridylase MnmA [Mobilicoccus pelagius NBRC
104925]
gi|377537460|dbj|GAB48056.1| tRNA-specific 2-thiouridylase MnmA [Mobilicoccus pelagius NBRC
104925]
Length = 365
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 97/262 (37%), Gaps = 62/262 (23%)
Query: 2 DAISSMEFDYVASGHYANVVHSSAD---------HKDKPSVKDQTYFLSHLSQAQLRRLI 52
D ++ FD VA+GHYA +V H+ + KDQ+Y L + + QL
Sbjct: 112 DKTLALGFDGVATGHYARIVDPGDPDNTTGRRELHRAADAAKDQSYVLGVMDERQLAAAF 171
Query: 53 FHLVLYPRLTIPMEG-----------------IILEAET-------------------GD 76
F L + I E I + +T G+
Sbjct: 172 FPLGDTTKPEIRREAAERGFAVAKKPDSYDICFISDGDTRGWLAGRLGERPGEIVDTSGE 231
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVY----RYVVEKDIENNIVFVS-RNYYSFDKKRHLF 131
+ +HRG + YT+GQ + L L RYVV+ D+ N V V D
Sbjct: 232 IVGEHRGAYGYTVGQRKGLALRRPAADGRPRYVVDTDVTTNRVVVGPEEMLGID-----V 286
Query: 132 HAGSLKLLSGLPPEKI----SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
G G PE + +Q+ + T E DG VV+L+ ++G+AAGQ
Sbjct: 287 IVGENARWCGPAPEGLVPVGAQVRAHGRELPATAEATPDG---EVVVRLAHRERGVAAGQ 343
Query: 188 FAAFYQGRRCLGSGVILEAWDD 209
Y G R +GS I D
Sbjct: 344 SVVLYDGTRVVGSATITRTARD 365
>gi|110834136|ref|YP_692995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alcanivorax borkumensis SK2]
gi|123149502|sp|Q0VQ25.1|MNMA_ALCBS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|110647247|emb|CAL16723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alcanivorax borkumensis SK2]
Length = 364
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 44/249 (17%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIFHL--V 56
+D ++ DY+A+GHY+ V H+ + + KDQTYFL + + R +F L +
Sbjct: 114 LDHAITLGADYIATGHYSQVSHTGKAKLLRAVDTNKDQTYFLHAVDYQKFDRTLFPLGDL 173
Query: 57 LYPRLT----------------------------------IPMEGIILEAETGDFLEKHR 82
P + +P + +E + G+ + +H
Sbjct: 174 EKPEVRRIAEQKGFDNHKKKDSTGICFIGERRFKDFLEQYLPAQPGSIEDDHGNVIGQHD 233
Query: 83 GFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK 137
G +YT+GQ Q LG+ + YV +KD+E N++ + + ++ ++
Sbjct: 234 GLMYYTLGQRQGLGIGGLASASEAPWYVAKKDLERNVLIAVQGTDHPLLYSRVLNSAPMQ 293
Query: 138 LLSGLPPEKISQLHS-VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
++ P ++L + Y D GE V E + + GQ FY G
Sbjct: 294 WVALEAPALPARLTAKTRYRQPDQGCTVSDAGEGRVTVTFDEPQRAVTPGQSVVFYDGPV 353
Query: 197 CLGSGVILE 205
CLG VI E
Sbjct: 354 CLGGAVIEE 362
>gi|422877658|ref|ZP_16924128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1056]
gi|332359520|gb|EGJ37339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1056]
Length = 373
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAVVNFDKPQRAVTPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|288906423|ref|YP_003431645.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus UCN34]
gi|288733149|emb|CBI14730.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus gallolyticus UCN34]
Length = 373
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 109/261 (41%), Gaps = 63/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D ++ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL+++
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDEDGTVHMLRGADNN-----KDQTYFLSQLSQEQLQKV 167
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F L + P + E GI L A+ G +
Sbjct: 168 MFPLGHLEKPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDG 227
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+H G +YTIGQ LG+ +VV KD+ NI++V + +Y
Sbjct: 228 RDMGEHAGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTS 287
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A S+ +P E ++ + F + +T+ H + A V E + + G
Sbjct: 288 LDASSIHFTRDMPEEFTMEVTAKFRYRQPDSKVTV-HVKGAK---AEVVFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAW 207
Q FY G CLG G+I A+
Sbjct: 344 QAVVFYDGEECLGGGIIDMAY 364
>gi|419813699|ref|ZP_14338511.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus sp. GMD2S]
gi|419816683|ref|ZP_14340866.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus sp. GMD4S]
gi|404466946|gb|EKA12216.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus sp. GMD4S]
gi|404472632|gb|EKA17049.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus sp. GMD2S]
Length = 373
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRNMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|398805057|ref|ZP_10564039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Polaromonas sp. CF318]
gi|398092515|gb|EJL82926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Polaromonas sp. CF318]
Length = 412
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 100/265 (37%), Gaps = 62/265 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVH--SSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-- 53
+D + + +A+GHYA V H S+ H K KDQ+YFL L+QAQL + +F
Sbjct: 122 LDHAMRLGAEKIATGHYARVRHNESTGLHELLKGLDPAKDQSYFLHRLNQAQLSKTLFPV 181
Query: 54 ---HLVLYPRLT----IP------MEGII---------------------LEAETGDFLE 79
H R+ +P GI ++ + G L
Sbjct: 182 GELHKTEVRRIADEIGLPNAKKKDSTGICFIGERPFRDFLNRYIAKAPGPIKNDKGRVLG 241
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR---------------------YVVEKDIENNIVFVS 118
+H G FYT+GQ Q LG+ + + +V KD+E N ++V
Sbjct: 242 EHVGLSFYTLGQRQGLGIGGVKAKGADLKAAQARGLRGVGEHDPWFVARKDLETNTLWVV 301
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSE 178
+ + + + A ++G PP + Y + D + ++
Sbjct: 302 QGHDHPWLQSTVLTAQDCSWVAGHPPAPGAMAAKTRYRQADAACELRQASSDSCELAFAD 361
Query: 179 DDQGLAAGQFAAFYQGRRCLGSGVI 203
+ GQ A YQG CLG GVI
Sbjct: 362 AQWAVTPGQSAVLYQGEVCLGGGVI 386
>gi|421453416|ref|ZP_15902772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus salivarius K12]
gi|400181725|gb|EJO15992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus salivarius K12]
Length = 373
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 104/260 (40%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ P + E GI E +L +G +G+
Sbjct: 173 HLQKPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 SMIHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKAE----VIFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|307545655|ref|YP_003898134.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halomonas elongata DSM 2581]
gi|307217679|emb|CBV42949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halomonas elongata DSM 2581]
Length = 370
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 95/252 (37%), Gaps = 61/252 (24%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF------------- 53
D++A+GHY K + KDQ+YFL + +A + R +F
Sbjct: 121 DWIATGHYVRRAERDGHARLLKGLDANKDQSYFLHAVPEAAIARSLFPVGELEKSEVRDI 180
Query: 54 -----------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTIG 90
+ R +P + + GD + +H G +YT+G
Sbjct: 181 AERHGLATARKKDSTGICFIGERRFRDFLRQYLPAQPGTIATPDGDVIGEHMGLMYYTLG 240
Query: 91 QHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL-----LS 140
Q Q LG+ + YV KD+E N++ V + K L + SL ++
Sbjct: 241 QRQGLGIGGLANYSDAPWYVAGKDLERNVLTVVQG-----KHHPLLYTDSLATEAMDWVA 295
Query: 141 GLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
G PP + + H+ + T+ ED G + V + + + GQ Y G
Sbjct: 296 GTPPAREGRYHAKTRYRQDDVPCTMRVAEDDGVE---VHFDDPQRAVTPGQSLVLYDGDI 352
Query: 197 CLGSGVILEAWD 208
CLG GVI W+
Sbjct: 353 CLGGGVIRATWN 364
>gi|228477995|ref|ZP_04062606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus salivarius SK126]
gi|228250175|gb|EEK09428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus salivarius SK126]
Length = 373
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 104/260 (40%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ P + E GI E +L +G +G+
Sbjct: 173 HLQKPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 SMIHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKAE----VIFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|410459953|ref|ZP_11313641.1| tRNA-specific 2-thiouridylase MnmA [Bacillus azotoformans LMG 9581]
gi|409927791|gb|EKN64917.1| tRNA-specific 2-thiouridylase MnmA [Bacillus azotoformans LMG 9581]
Length = 372
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 100/247 (40%), Gaps = 57/247 (23%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
++ DY+A+GHYA V + ++K V KDQTYFL+ L QAQL +++F L P+
Sbjct: 121 TLGADYLATGHYAQVEYRDGEYKMLRGVDDNKDQTYFLNQLGQAQLSKVMFPLGHLPKSE 180
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ H G +
Sbjct: 181 VRKIAAEAGLATATKKDSTGICFIGERNFKEFLSNYLPAQPGKMTTLDGEVKGTHEGLMY 240
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL--- 142
+TIGQ LG+ + + K+++ N+++V + +++ ++ SL ++G
Sbjct: 241 HTIGQRHGLGIGGSGEPWFAIGKNLKENVLYVGQGFHN-----DALYSDSLIAVNGSWVS 295
Query: 143 ---PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
P E Y + +T+E E ED V E + + GQ FY G
Sbjct: 296 DRKPTEPFVCTAKFRYRQPDIPVTVEIIE---EDKVRVIFGEPVRAITPGQSVVFYNGDE 352
Query: 197 CLGSGVI 203
CLG I
Sbjct: 353 CLGGATI 359
>gi|424668709|ref|ZP_18105734.1| tRNA-specific 2-thiouridylase mnmA [Stenotrophomonas maltophilia
Ab55555]
gi|401072045|gb|EJP80554.1| tRNA-specific 2-thiouridylase mnmA [Stenotrophomonas maltophilia
Ab55555]
Length = 380
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 99/252 (39%), Gaps = 52/252 (20%)
Query: 1 MDAISSMEFDYVASGHYANVV---HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+DA + + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGD 168
Query: 56 ------------VLYP-----------------------RLTIPMEGIILEAETGDFLEK 80
V P R G IL+ G + +
Sbjct: 169 LEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGRILDPADGSVIAE 228
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 HPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSET 288
Query: 136 LKLLSGLPP----EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
++G PP E +Q + T++ +DG +V + + + GQ
Sbjct: 289 AHWIAGSPPARCFECTAQTRYRQPDEPCTVQVLDDGS---VLVTFARPQRAVTPGQSLVL 345
Query: 192 YQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 346 YDGDVCLGGAVI 357
>gi|383760531|ref|YP_005439517.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax gelatinosus IL144]
gi|381381201|dbj|BAL98018.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax gelatinosus IL144]
Length = 363
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 95/249 (38%), Gaps = 47/249 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D + + +A+GHYA V K KDQ+YFL L+QAQL R +F +
Sbjct: 111 LDHAMRLGAERIATGHYARVRERDGRFELLKGLDPAKDQSYFLHRLNQAQLARTMFPVGE 170
Query: 58 YPRLTI--------------------------PMEGII----------LEAETGDFLEKH 81
P+ + P + +E E G + +H
Sbjct: 171 LPKTEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYLAQAPGDIEDERGRVVGRH 230
Query: 82 RGFWFYTIGQHQELGLLYIVYR-------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAG 134
G FYT+GQ Q LG+ + YV K++E N++ V + + A
Sbjct: 231 VGLSFYTLGQRQGLGIGGLKTGGGEHAPWYVARKELERNVLRVVQGHDHPWLLSRTLAAS 290
Query: 135 SLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
++G PP + + Y + GE + V+ +E + GQ A Y G
Sbjct: 291 DCAWVAGTPPAEGALAAKTRYRQADAACTLRRDGEAV-VLSFAEPQWAVTPGQSAVVYGG 349
Query: 195 RRCLGSGVI 203
CLG GVI
Sbjct: 350 EVCLGGGVI 358
>gi|421230968|ref|ZP_15687618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2080076]
gi|395597165|gb|EJG57372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2080076]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|387760337|ref|YP_006067314.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus salivarius 57.I]
gi|339291104|gb|AEJ52451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus salivarius 57.I]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 103/260 (39%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYT----IGQ 91
HL I + A+ D +L +G +G+
Sbjct: 173 HLQKPDVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 SMIHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKAE----VVFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|358465266|ref|ZP_09175216.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. oral taxon 058 str. F0407]
gi|357065761|gb|EHI75936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. oral taxon 058 str. F0407]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V H + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVAHDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 DLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|168483769|ref|ZP_02708721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CDC1873-00]
gi|417695295|ref|ZP_12344475.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47368]
gi|418090764|ref|ZP_12727909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44452]
gi|418108369|ref|ZP_12745404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41410]
gi|418168229|ref|ZP_12804875.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA19077]
gi|418174949|ref|ZP_12811547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41437]
gi|418217884|ref|ZP_12844553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae NP127]
gi|418220078|ref|ZP_12846735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47751]
gi|418237728|ref|ZP_12864285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae NorthCarolina6A-23]
gi|419459002|ref|ZP_13998938.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA02270]
gi|419461274|ref|ZP_14001192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA02714]
gi|419524909|ref|ZP_14064475.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA14373]
gi|421271785|ref|ZP_15722632.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SPAR55]
gi|172042905|gb|EDT50951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CDC1873-00]
gi|332203292|gb|EGJ17359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47368]
gi|353766137|gb|EHD46677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44452]
gi|353776896|gb|EHD57370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41410]
gi|353836148|gb|EHE16236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA19077]
gi|353843509|gb|EHE23553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41437]
gi|353877025|gb|EHE56869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae NP127]
gi|353877875|gb|EHE57714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47751]
gi|353894861|gb|EHE74601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae NorthCarolina6A-23]
gi|379533874|gb|EHY99086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA02270]
gi|379535310|gb|EHZ00514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA02714]
gi|379560613|gb|EHZ25635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA14373]
gi|395877344|gb|EJG88413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SPAR55]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|12045151|ref|NP_072962.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma genitalium G37]
gi|1723144|sp|P47537.1|MNMA_MYCGE RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|3844874|gb|AAC71516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma genitalium G37]
gi|166078872|gb|ABY79490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[synthetic Mycoplasma genitalium JCVI-1.0]
Length = 367
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 108/243 (44%), Gaps = 64/243 (26%)
Query: 13 ASGHYA--NVVHSSADHK-DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI------ 63
A+GHYA N++ + K + KDQTYFL+++ + Q + +IF L ++T+
Sbjct: 137 ATGHYAKINMIENQPLLSIPKDTNKDQTYFLANVKKEQFQNVIFPLADLKKITVRNIARE 196
Query: 64 ------------------------------PME-GIILEAETGDFLEKHRGFWFYTIGQH 92
P++ G+I + +T + +H G WFYTIGQ
Sbjct: 197 NNWEVADKKDSTGICFIGERHFSDFLKNYLPVKKGLIKDWKTKQTISEHDGVWFYTIGQR 256
Query: 93 QELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLH 151
L L + R +VV KDIE N +FV S DK+ L L + L K QL
Sbjct: 257 SGLNLGGLKQRHFVVAKDIETNELFV-----SCDKEELLKTTILLDQFNWLYTPK--QLP 309
Query: 152 SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQ----------GLAAGQFAAFYQ-GRRCLGS 200
S + I H + +IA ++L D++ +A+GQF Y + CLG+
Sbjct: 310 S---QVLVRIRHAQK--PEIAKLKLLSDNKLEITFKNPVISVASGQFGVLYTLDQICLGA 364
Query: 201 GVI 203
G+I
Sbjct: 365 GLI 367
>gi|381150728|ref|ZP_09862597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylomicrobium album BG8]
gi|380882700|gb|EIC28577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylomicrobium album BG8]
Length = 363
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 95/246 (38%), Gaps = 45/246 (18%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---HL- 55
AI + +Y+A+GHYA V ++ K K+Q+YFL + Q QL R +F HL
Sbjct: 112 AIEDLGAEYIATGHYARVEARGGEYFLLKGLDPGKEQSYFLYTMGQKQLSRTLFPIGHLH 171
Query: 56 --------------------------------VLYPRLTIPMEGIILEAETGDFLEKHRG 83
+ + +P + + G + +H G
Sbjct: 172 KSEIRTMAEKAGFANSRKKDSTGICFIGERKFREFLQRYLPTQPGDIRTPEGKTIGRHHG 231
Query: 84 FWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
+YT+GQ Q LG+ + YV+EKD++NN++ V + + ++ AG L
Sbjct: 232 LMYYTLGQRQGLGIGGVKDTPDEPWYVLEKDLDNNVLVVGQGHDHPLMLHNVLEAGQLDW 291
Query: 139 LSGLP-PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
SG P I Y + E+ E + + GQ FY C
Sbjct: 292 CSGRPLAGTIRCAAKTRYRQTDQPCRLIPLPENRCKAVFDEPQRAITPGQSVVFYDDEVC 351
Query: 198 LGSGVI 203
LG G+I
Sbjct: 352 LGGGII 357
>gi|226312727|ref|YP_002772621.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599]
gi|226095675|dbj|BAH44117.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599]
Length = 370
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 94/242 (38%), Gaps = 51/242 (21%)
Query: 10 DYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V + ++K + KDQTYFL+ L Q QL + +F + P+ +
Sbjct: 122 DYIATGHYAQVKYIDGEYKLIRGADNNKDQTYFLNVLGQEQLSKTMFPIGHLPKPQVREI 181
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + +E G + H G +YT+G
Sbjct: 182 AEKAGLYTAKKKDSTGICFIGERNFREFLQNYLPAKQGNIETVDGAVIGTHDGLMYYTLG 241
Query: 91 QHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
Q Q LG+ +VV+KD+E N + V A ++ +S P
Sbjct: 242 QRQGLGIGGGHGTSGQPWFVVDKDLERNALIVGEGSDHIRLYSKSLLATNVSWVSDKKPS 301
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ + F + +T+ EDG ++ + + + GQ FY G CLG G
Sbjct: 302 ETFTCTAKFRYRQPDQGVTVHLLEDGNVEVV---FDQPQKAVTPGQAVVFYNGEVCLGGG 358
Query: 202 VI 203
I
Sbjct: 359 TI 360
>gi|227544860|ref|ZP_03974909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri CF48-3A]
gi|338204202|ref|YP_004650347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri SD2112]
gi|227185134|gb|EEI65205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri CF48-3A]
gi|336449442|gb|AEI58057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri SD2112]
Length = 377
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 101/257 (39%), Gaps = 69/257 (26%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-- 63
DYVA+GHYA+V + K KDQTYFLS L QL +++F L Y + I
Sbjct: 122 DYVATGHYADVKRDENGRMHLMRAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYTKPEIRK 181
Query: 64 -------------PMEGIILEAETGDFLE-----------KHRGFWFYTIGQHQELGLLY 99
GI E G F E +GQH +GL+Y
Sbjct: 182 IAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIPAQPGNMETLDGKVVGQH--MGLMY 239
Query: 100 IVYR-----------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
+V+ KD++ N+++V + Y + HL+ A L+
Sbjct: 240 YTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGY----ENSHLY-ATHLEASDIH 294
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAV-VQLSEDDQ-----------GLAAGQFAA 190
+ + + ++C+ + + D+ V V LSEDDQ + GQ
Sbjct: 295 WVDDVVSRYGRDFHCTAKFRYRQ---TDVGVTVHLSEDDQMVTVEFDDPARAITPGQAVV 351
Query: 191 FYQGRRCLGSGVILEAW 207
FY G CLGS +I A+
Sbjct: 352 FYDGEECLGSAIIDRAY 368
>gi|340399872|ref|YP_004728897.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus salivarius CCHSS3]
gi|418018857|ref|ZP_12658412.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus salivarius M18]
gi|338743865|emb|CCB94375.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus salivarius CCHSS3]
gi|345526299|gb|EGX29611.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus salivarius M18]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 104/260 (40%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ P + E GI E +L +G +G+
Sbjct: 173 HLQKPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 SMIHFTRDMPEEFEMKCTAKFRYRQPDSKVTVKVKGDKAE----VIFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|422852655|ref|ZP_16899319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK160]
gi|325698055|gb|EGD39936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK160]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTIECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAVTPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|456735855|gb|EMF60581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Stenotrophomonas maltophilia EPM1]
Length = 380
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 99/252 (39%), Gaps = 52/252 (20%)
Query: 1 MDAISSMEFDYVASGHYANVV---HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+DA + + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGD 168
Query: 56 ------------VLYP-----------------------RLTIPMEGIILEAETGDFLEK 80
V P R G IL+ G + +
Sbjct: 169 LEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPARPGQILDPADGSVIAE 228
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 HPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSET 288
Query: 136 LKLLSGLPP----EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
++G PP E +Q + T++ +DG +V + + + GQ
Sbjct: 289 AHWIAGSPPARRFECTAQTRYRQPDEPCTVQVLDDGS---VLVTFARPQRAVTPGQSLVL 345
Query: 192 YQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 346 YDGDVCLGGAVI 357
>gi|445384245|ref|ZP_21427515.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus MTCC
5460]
gi|445396540|ref|ZP_21429254.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus MTCC
5461]
gi|444748062|gb|ELW73053.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus MTCC
5461]
gi|444748095|gb|ELW73084.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus MTCC
5460]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 103/260 (39%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYT----IGQ 91
HL I + A+ D +L +G +G+
Sbjct: 173 HLQKSEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 SMIHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKSE----VIFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|315604614|ref|ZP_07879677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Actinomyces sp. oral taxon 180 str. F0310]
gi|315313626|gb|EFU61680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Actinomyces sp. oral taxon 180 str. F0310]
Length = 363
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 6 SMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP--- 59
++ FD V +GHYA +V + H+ ++KDQ+Y L+ + +L R++ L P
Sbjct: 116 ALGFDAVCTGHYAAIVDGPSGPELHRGADALKDQSYVLAVMGPEELARVVLPLGQAPSKA 175
Query: 60 -------RLTIPM----------------------------EGIILEAETGDFLEKHRGF 84
RL + + EG I+ + G+ L +H G+
Sbjct: 176 WVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFLRAHLGASEGEIVTPD-GEVLGRHEGY 234
Query: 85 WFYTIGQHQELGLLYIV----YRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL-- 138
W YT+GQ + LG+ RYV+E E N V V + + H +A L
Sbjct: 235 WNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGPSELLSISRIHATNAVWLASDD 294
Query: 139 LSGLPPEKISQLHSVFYNCSLTI-EHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
P + QL + + + + E D V L + +G+A GQ Y+G R
Sbjct: 295 AGNEPADLFVQLRA--HGAPIPVAELVRDEASATIDVVLEDGARGVARGQSMVIYRGSRV 352
Query: 198 LGSGVI 203
LG G I
Sbjct: 353 LGEGTI 358
>gi|309799040|ref|ZP_07693293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantis SK1302]
gi|308117275|gb|EFO54698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantis SK1302]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V A + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEAGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|320355316|ref|YP_004196655.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Desulfobulbus propionicus DSM 2032]
gi|320123818|gb|ADW19364.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Desulfobulbus propionicus DSM 2032]
Length = 350
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 2 DAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
D + + + +A+GHYA V S D + KDQ+YFL+ L+ Q+ L+F L
Sbjct: 104 DTMRHQDLERIATGHYARV-QSVGDRCFVARGSDRTKDQSYFLARLAADQVNTLLFPLGD 162
Query: 56 ----VLYPR------------------LTIPMEGIILEAETGDF-----------LEKHR 82
+Y R L+ + + E GD + +HR
Sbjct: 163 WTKQQVYARAAALGFHFSGEESQDVCFLSQGLAAFLSEQGIGDLCGPVVTADGRQIGEHR 222
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
G W YTIGQ + LGL + YVV D N V V + F + + L
Sbjct: 223 GVWHYTIGQRRGLGLPDVTPWYVVGLDGPGNRVIVGKQDDLFATRCTVHALRWTHQPPAL 282
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
P + QL S + G E ++V + + GQFA Y+ R +GS V
Sbjct: 283 PWRGLVQLRSRHTPAMAAL--APSGPEQWSLV-FDTPQRAITPGQFAVCYEHDRVVGSAV 339
Query: 203 I 203
I
Sbjct: 340 I 340
>gi|329894882|ref|ZP_08270681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium IMCC3088]
gi|328922611|gb|EGG29946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium IMCC3088]
Length = 361
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 106/260 (40%), Gaps = 64/260 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ D++A+GHYA +A K KDQ+YFL + L + +F L
Sbjct: 111 LDYALNLGADFIATGHYARTGLDNAGLTTLQKGADPNKDQSYFLHQVPHQALAKTLFPLG 170
Query: 56 -----------------------------VLYPRLT------IPMEGIILEAETGDFLEK 80
+ R T +P + + A +G+ L
Sbjct: 171 DMHKTEVRERAKAAGLATFDKKDSTGICFIGERRFTDFLSTYLPAQPGKIVAVSGEELGS 230
Query: 81 HRGFWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H+G ++TIGQ Q LG+ YVV+KD++NN + V++ ++ LF
Sbjct: 231 HQGLMYHTIGQRQGLGIGGTKDFGDAPWYVVDKDLDNNRLIVAQG----NQHPSLFK--- 283
Query: 136 LKLLSGLPPEKISQLHSVFYNCSLTIEH------CE---DGGEDIAVVQLSEDDQGLAAG 186
+ L+ + P I + CS I + C GG+ +V+ + + + G
Sbjct: 284 -QRLTVVDPFWIGTPPPRDFRCSAKIRYRQPDQPCSVSYQGGD--LLVEFDQAQRAITPG 340
Query: 187 QFAAFYQGRRCLGSGVILEA 206
Q FY G RCLG GVI A
Sbjct: 341 QSVVFYDGDRCLGGGVIAGA 360
>gi|418161187|ref|ZP_12797878.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17328]
gi|419488025|ref|ZP_14027778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44386]
gi|353830777|gb|EHE10906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17328]
gi|379590140|gb|EHZ54978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44386]
Length = 363
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 103 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 162
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 163 HLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 222
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 223 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 282
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 283 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 338
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 339 YDGEECLGGGLIDNAYRD 356
>gi|190574280|ref|YP_001972125.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia
K279a]
gi|205828975|sp|B2FQX2.1|MNMA_STRMK RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|190012202|emb|CAQ45825.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Stenotrophomonas maltophilia K279a]
Length = 380
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 99/252 (39%), Gaps = 52/252 (20%)
Query: 1 MDAISSMEFDYVASGHYANVV---HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+DA + + +A+GHYA V H + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGD 168
Query: 56 ------------VLYP-----------------------RLTIPMEGIILEAETGDFLEK 80
V P R G IL+ G + +
Sbjct: 169 LEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPAKPGQILDPADGSVIAE 228
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 HPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSET 288
Query: 136 LKLLSGLPP----EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
++G PP E +Q + T++ +DG +V + + + GQ
Sbjct: 289 AHWIAGSPPARRFECTAQTRYRQPDEPCTVQVLDDGS---VLVTFARPQRAVTPGQSLVL 345
Query: 192 YQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 346 YDGDVCLGGAVI 357
>gi|182683091|ref|YP_001834838.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae
CGSP14]
gi|182628425|gb|ACB89373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CGSP14]
Length = 391
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 131 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 190
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 191 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 250
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 251 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 310
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 311 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFTEPQRAITPGQAVVF 366
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 367 YDGEECLGGGLIDNAYRD 384
>gi|406658879|ref|ZP_11067019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus iniae 9117]
gi|405579094|gb|EKB53208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus iniae 9117]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYAQVKRDQNGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTLFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL I E + A+ D +L +G G+ +
Sbjct: 173 HLEKSEVRKIAEEAGLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASV 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ + P E + + F + ++T++ D E V +E + + GQ F
Sbjct: 293 IHFTTETPEEFTLECTAKFRYRQPDSAVTVKVKGDKAE----VIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGDECLGGGMIDMAYKD 366
>gi|325847124|ref|ZP_08169950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481096|gb|EGC84141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 369
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 105/258 (40%), Gaps = 60/258 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D + DY+A+GHYA V SS + K S KDQTYFLS LSQ Q++ ++F +
Sbjct: 115 LDYAKDLGADYLATGHYARVDRSSGETKMLRGIDSNKDQTYFLSQLSQDQIKDVLFPVGN 174
Query: 58 YPRLTI-------------------------------------PMEGIILEAETGDFLEK 80
+ + EG I++ + G+ + K
Sbjct: 175 LDKKEVRKIAKENNLATADKKDSTGICFIGERNFNEFLSNYLPAKEGNIVDTD-GNIMGK 233
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENN--IVFVSRNYYSFDKKRHLFHAGSLK 137
H G ++TIGQ + LG+ +V KD+E N IV +N R + S
Sbjct: 234 HYGLMYHTIGQRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSSI 293
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE------DIAVVQLSEDD-QGLAAGQFAA 190
GL E ++C+ + + D V++ D + + GQ A
Sbjct: 294 SAEGLKKE---------FDCTCKFRYRQKDINSHVKILDDGKVEIRYDKTKAVTPGQAAV 344
Query: 191 FYQGRRCLGSGVILEAWD 208
FY G CLGS +I E ++
Sbjct: 345 FYDGEVCLGSCIIDEVYN 362
>gi|418192831|ref|ZP_12829327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47439]
gi|421239711|ref|ZP_15696264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2080913]
gi|353860978|gb|EHE40917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47439]
gi|395610585|gb|EJG70661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2080913]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|417918071|ref|ZP_12561624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis SK236]
gi|342829062|gb|EGU63423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis SK236]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME---------------------------GIILEAETGDFLE-------K 80
+ P + E G L A+ G + +
Sbjct: 173 YLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTIDGRDMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|418026842|ref|ZP_12665601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus thermophilus CNCM I-1630]
gi|354694257|gb|EHE93941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus thermophilus CNCM I-1630]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 104/260 (40%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ P + E GI E +L +G +G+
Sbjct: 173 HLQKPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 SMIHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKSE----VIFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|386585164|ref|YP_006081567.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis D9]
gi|353737310|gb|AER18319.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis D9]
Length = 419
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 159 LDYAMNLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P++ E GI E G +L G G+ +
Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTVDGRDMGE 278
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 279 HTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQ 338
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E V +E + + GQ F
Sbjct: 339 VHFTRDMPEEFKLECTAKFRYRQPDSQVTVKVKGDKAE----VIFAEPQRAITPGQAVVF 394
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G+ CLG G+I A+ D
Sbjct: 395 YDGQECLGGGMIDMAYKD 412
>gi|387785107|ref|YP_006071190.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus salivarius JIM8777]
gi|338745989|emb|CCB96355.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus salivarius JIM8777]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 104/260 (40%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ P + E GI E +L +G +G+
Sbjct: 173 HLQKPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 SMIHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKAE----VIFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|39938611|ref|NP_950377.1| tRNA(5-methylaminomethyl-2-thiouridylate) [Onion yellows
phytoplasma OY-M]
gi|81565131|sp|Q6YR90.1|MNMA_ONYPE RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|39721720|dbj|BAD04210.1| tRNA(5-methylaminomethyl-2-thiouridylate) [Onion yellows
phytoplasma OY-M]
Length = 378
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 110/262 (41%), Gaps = 69/262 (26%)
Query: 3 AISSMEFDYVASGHYANVVH-SSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF- 53
A + + Y+A GHYAN+++ +S+D K P + KDQTYFLS L+ QL+ ++F
Sbjct: 120 ATTKLAPQYIAMGHYANIIYETSSDQKLVPRLACAVDQNKDQTYFLSQLTTKQLQNILFP 179
Query: 54 --HLVLYPRLTIPME------------GII--------------LEAETGD-------FL 78
+L I +E GI L A+ GD FL
Sbjct: 180 LGNLTKQEVRQIALENNLINATKKDSTGICFIGERNFFQFLSNYLPAQKGDIKTLDGTFL 239
Query: 79 EKHRGFWFYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H+G +YTIGQ + LGL + + +VV K + N ++V + H +
Sbjct: 240 AHHKGVMYYTIGQRKNLGLGDVPSQKPWFVVGKHLPTNTLYVEQG------STHPYLYSD 293
Query: 136 LKLLSGLPPE-KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD---------QGLAA 185
L+ + K + LH + + +D+ + L +++ + +
Sbjct: 294 KALIGDIVWRGKKTNLH-----LQAKMRY-RQPNQDVILTWLDQNNLEIHYPQTIKAVTP 347
Query: 186 GQFAAFYQGRRCLGSGVILEAW 207
GQ AFY C G+GVI E +
Sbjct: 348 GQICAFYDKNICCGAGVIKEVY 369
>gi|225857998|ref|YP_002739508.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae 70585]
gi|418109103|ref|ZP_12746132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA49447]
gi|419422219|ref|ZP_13962438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA43264]
gi|419441574|ref|ZP_13981609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13224]
gi|254811463|sp|C1CAE7.1|MNMA_STRP7 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|225721738|gb|ACO17592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 70585]
gi|353784396|gb|EHD64816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA49447]
gi|379555070|gb|EHZ20139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13224]
gi|379589550|gb|EHZ54389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA43264]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|225869459|ref|YP_002745407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus equi subsp. zooepidemicus]
gi|259495839|sp|C0MGQ2.1|MNMA_STRS7 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|225702735|emb|CAX00880.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus equi subsp. zooepidemicus]
Length = 374
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 65/264 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV----------KDQTYFLSHLSQAQLRR 50
+D ++ DYVA+GHYA + +D+ V KDQTYFLS LSQ QL++
Sbjct: 114 LDYAMTLGADYVATGHYAQI------KRDENGVVHMLRGFDKGKDQTYFLSQLSQKQLQK 167
Query: 51 LIF---HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTI 89
+F HL I + + A+ D +L +G
Sbjct: 168 TMFPLGHLQKSEVRAIAEQAGLATAKKKDSTGICFIGEKNFKTFLSHYLPAQKGRMMTVD 227
Query: 90 GQH--QELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRH 129
G+ + GL+Y +VV KD+ NI++V + +Y
Sbjct: 228 GRDMGEHAGLMYYTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMST 287
Query: 130 LFHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAA 185
A ++ +P E + + F + +T+ H + +D A V +E + +
Sbjct: 288 SLDASVIQFTREVPEEFTLECTAKFRYRQPDSKVTV-HVK---KDKAKVVFAEPQRAITP 343
Query: 186 GQFAAFYQGRRCLGSGVILEAWDD 209
GQ FY G CLG G+I A+ D
Sbjct: 344 GQAVVFYDGHECLGGGIIDMAYKD 367
>gi|419800909|ref|ZP_14326161.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis F0449]
gi|385693398|gb|EIG24046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis F0449]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME---------------------------GIILEAETGDFLE-------K 80
+ P + E G L A+ G + +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTIDGRDMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRNMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|312865771|ref|ZP_07725993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus downei F0415]
gi|311098646|gb|EFQ56868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus downei F0415]
Length = 374
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 110/264 (41%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D S+ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL+++
Sbjct: 114 LDYAMSLGADYVATGHYAQVSRDEDGTVHMLRGADNN-----KDQTYFLSQLSQEQLQKV 168
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F L + P + E GI L A+ G L
Sbjct: 169 MFPLGHLEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMLTLDG 228
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+H G +YTIGQ LG+ +VV KD+ NI++V + +Y
Sbjct: 229 KDMGQHAGLMYYTIGQRGGLGIGGQQGGGNAPWFVVGKDLSQNILYVGQGFYHDALMSTS 288
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A ++ P E + + F + +T+ H + D A V + + + G
Sbjct: 289 LKASTIHFTRDTPEEFTMECTAKFRYRQPDSKVTV-HVKG---DQAEVVFDQPQRAITPG 344
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 345 QAVVFYDGDECLGGGIIDNAYKNE 368
>gi|303260932|ref|ZP_07346881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP14-BS292]
gi|303269624|ref|ZP_07355383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae BS458]
gi|387758495|ref|YP_006065473.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae INV200]
gi|417685613|ref|ZP_12334893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41301]
gi|418138480|ref|ZP_12775312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13338]
gi|418158770|ref|ZP_12795476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17227]
gi|418179515|ref|ZP_12816090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41688]
gi|419513750|ref|ZP_14053378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae England14-9]
gi|419520113|ref|ZP_14059712.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA05245]
gi|421295411|ref|ZP_15746126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA58581]
gi|301801084|emb|CBW33752.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae INV200]
gi|302637769|gb|EFL68255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP14-BS292]
gi|302640826|gb|EFL71214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae BS458]
gi|332077431|gb|EGI87892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41301]
gi|353826425|gb|EHE06583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17227]
gi|353846937|gb|EHE26964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41688]
gi|353906187|gb|EHE81591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13338]
gi|379541737|gb|EHZ06902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA05245]
gi|379638240|gb|EIA02785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae England14-9]
gi|395897480|gb|EJH08439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA58581]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|335042529|ref|ZP_08535556.1| putative tRNA methyltransferase [Methylophaga aminisulfidivorans
MP]
gi|333789143|gb|EGL55025.1| putative tRNA methyltransferase [Methylophaga aminisulfidivorans
MP]
Length = 367
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 72/262 (27%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSA--------DHKDKPSVKDQTYFLSHLSQAQLRRLI 52
+D + D +A+GHYA V + DHK KDQ+YFL L Q QL R
Sbjct: 111 LDHAIELGGDIIATGHYARVEERNGQFHLLKGQDHK-----KDQSYFLYTLGQEQLSRTR 165
Query: 53 FHLVLYPRLT------------------------------------IPMEGIILEAETGD 76
F L P+ IP + + G+
Sbjct: 166 FPLGDLPKTEVRRIAEQAGFINHDKKDSTGICFIGERHFREFLSRYIPAQPGEMRTPEGE 225
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR--------YVVEKDIENNIVFVSRNYYSFDKKR 128
+ H G +YT+GQ Q LG I R +V KD++N I++V + + + +
Sbjct: 226 IIGDHAGLMYYTLGQRQGLG---IGGRKDSTGEPWFVAGKDMDNQILYVVQGDHPWLWSQ 282
Query: 129 HLFHAGSLKLLSGLPPE------KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQG 182
+L A L ++G PPE ++ C++T +D +I V+ E +
Sbjct: 283 NLV-AEELSWVAGHPPEFPCRAAAKTRYRQPDQACTIT----QDDNGNIH-VEFDEKQRA 336
Query: 183 LAAGQFAAFYQGRRCLGSGVIL 204
+ GQ FY CLG G+I+
Sbjct: 337 VTPGQSVVFYLDDDCLGGGIIV 358
>gi|325844820|ref|ZP_08168272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Turicibacter sp. HGF1]
gi|325489007|gb|EGC91395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Turicibacter sp. HGF1]
Length = 377
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 107/260 (41%), Gaps = 60/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIF----- 53
+D ++ DY+A GHYA V H + + KDQTYFLS L+QAQL + +F
Sbjct: 123 LDYAMNLGCDYIAMGHYARVSHEGEVQMLRGLDNNKDQTYFLSQLTQAQLSKTLFPVGEL 182
Query: 54 -------------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHR 82
+ + + +P + + G+ + +H
Sbjct: 183 QKSEVRAIAEKLDLATAKKKDSTGVCFIGERNFTQFLQNYLPAQPGQMRTLEGEVVGEHI 242
Query: 83 GFWFYTIGQHQELGLLYIV-YRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
G +YTIGQ + LG+ +V+ K++++N++ V + FD + + ++
Sbjct: 243 GLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQ---GFDHEYVYADEALVSNVNW 299
Query: 142 LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV-----------VQLSEDDQGLAAGQFAA 190
+P E+ Y C+ + + DI V V++ E + + GQ A
Sbjct: 300 IPSERFVGT----YRCTAKFRYRQ---PDIPVELTWIDDETLNVKMLEPVRAVTPGQAAV 352
Query: 191 FYQGRRCLGSGVILEAWDDQ 210
FY CLG G I A+ D+
Sbjct: 353 FYLDEVCLGGGRIEVAYKDK 372
>gi|379012230|ref|YP_005270042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
[Acetobacterium woodii DSM 1030]
gi|375303019|gb|AFA49153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
[Acetobacterium woodii DSM 1030]
Length = 349
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 102/244 (41%), Gaps = 63/244 (25%)
Query: 12 VASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL------------- 55
+A+GHYA ++ +++ S+ KDQ+YFL HL+Q L RLIF L
Sbjct: 112 MATGHYAEIIKVGQEYQLLASLNKNKDQSYFLYHLNQDILGRLIFPLNQFESKRDVRKSI 171
Query: 56 -VLYPRLT----------IPMEG---IILEA--------------ETGDFLEKHRGFWFY 87
L+P L+ IP +G I EA G L KH G +
Sbjct: 172 AGLFPELSNGNESQGICFIPAKGHHLFIKEAVFGANPTPSGNFVDAAGKILGKHSGVHAF 231
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRN---YYS--FDKKRHLFHAGSLKLLSGL 142
T+GQ + LG+ VVE E N + + R Y + F + + H SL
Sbjct: 232 TLGQTRGLGIHNERRLAVVEIIPETNTIVLDREEALYQTDIFVDQLYFQHQRSL------ 285
Query: 143 PPEKISQLHSVFYNCSLTIEH---CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
PE F C +E+ E +D A++ + + A GQ FYQGR+ LG
Sbjct: 286 -PET----GFTFKTCRWGLEYQGQIELTAKDQAIIHCHQAVRAPAPGQTLVFYQGRQVLG 340
Query: 200 SGVI 203
G+I
Sbjct: 341 GGII 344
>gi|152978287|ref|YP_001343916.1| tRNA-specific 2-thiouridylase MnmA [Actinobacillus succinogenes
130Z]
gi|205811095|sp|A6VLY4.1|MNMA_ACTSZ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|150840010|gb|ABR73981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Actinobacillus succinogenes 130Z]
Length = 389
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 106/250 (42%), Gaps = 53/250 (21%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
A + DY+A+GHY V S DH + + KDQ+YFL LS+ Q+ + +F +
Sbjct: 139 AAEDLGADYIATGHY--VRRSGPDHDAHLLRGLDNNKDQSYFLHALSKKQVGQSLFPVGE 196
Query: 58 YPRLTI------------------------------------PMEGIILEAETGDFLEKH 81
+ + P + ++ G+ + +H
Sbjct: 197 VEKTVVRAVAEELGLITAKKKDSTGICFIGERKFKDFLARFLPAQPGDIKTTEGEVIGRH 256
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
+G ++T+GQ + LG+ I + YVVEKD++NN++ V++ + + + A L
Sbjct: 257 QGLMYHTLGQRKGLGIGGIKGKDENAWYVVEKDLKNNVLVVAQGHDNSALQSSGLIAKQL 316
Query: 137 KLLSGLPPEKISQLH-SVFYNCSLTIEHCE--DGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
+S P K LH +V T CE +D V E + GQ A FYQ
Sbjct: 317 TWVSEQPLRKT--LHCTVKTRYRQTDIACEVVPVNDDTVEVHFDEPQIAVTPGQSAVFYQ 374
Query: 194 GRRCLGSGVI 203
G CLG G+I
Sbjct: 375 GEECLGGGII 384
>gi|406944280|gb|EKD76088.1| hypothetical protein ACD_43C00228G0001 [uncultured bacterium]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 105/249 (42%), Gaps = 61/249 (24%)
Query: 6 SMEFDYVASGHYANV--VHSSADH-------KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
++ F+ +A+GHYA V + SA + K KDQ+YF+ HL+Q QL +++F
Sbjct: 128 ALGFEKIATGHYARVGELRPSAPNAASWQLLKGVDPNKDQSYFIYHLNQTQLAKILFPIG 187
Query: 54 HL------VLYPRLTIPM------EGII--------------LEAETG-------DFLEK 80
HL L +P+ +G+ ++AE G + +
Sbjct: 188 HLQKSEVRKLAQDFKLPVAHKPDSQGLCFIGDINFQTFLKQYVKAEPGPMILTDGTIMGQ 247
Query: 81 HRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
H+G +YTIGQ Q L + YVVEK + +N + + + +S
Sbjct: 248 HKGLAYYTIGQRQGLEIGGTGPYYVVEKRLADNTLIICQGANDKSLLSSWCTFAEEHWVS 307
Query: 141 GLPPEKISQLHSVFYNCSLTIEH------CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
G+ P + + CS I + C G I + +E + + GQFA FY G
Sbjct: 308 GVRPAEE-------FECSAKIRYRSPDVKCRVIGNHI---EFAEPARAVTPGQFAVFYNG 357
Query: 195 RRCLGSGVI 203
+ LG GVI
Sbjct: 358 DQVLGGGVI 366
>gi|300087159|ref|YP_003757681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299526892|gb|ADJ25360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 359
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 102/238 (42%), Gaps = 43/238 (18%)
Query: 5 SSMEFDYVASGHYANV-VHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL---- 55
S ++F++V +GHYA H ++ + + KDQ+YFLS LSQAQLR L F L
Sbjct: 124 SGLDFEFVFTGHYARTDFHHQSNRYRLLRARYHNKDQSYFLSRLSQAQLRILRFPLGDLS 183
Query: 56 -----VLYPRLTIPM------EGII----------------LEAETGDFLEKHRGFWFYT 88
L R+ +P+ + I ++ ++GD + +H G +T
Sbjct: 184 KDEVRKLAERINLPVSRKEESQNFISGGYRQLVCSQDTSGPIKNKSGDIIGQHSGISSFT 243
Query: 89 IGQHQELGLLYIVYRYVVEKDI-ENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
IGQ LGL YVV+ D EN IV +R+ D+ L +S E
Sbjct: 244 IGQRHGLGLSSPEPLYVVQIDAPENTIVVGARSALYRDE----IQVEKLNWISISQLENP 299
Query: 148 SQLHSVFYNCSLTIEH--CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
QL + + ++ + D V+ A GQ A FY+ +GSGVI
Sbjct: 300 VQLTARVRSAAVPAAAMVIPNHLTDSVTVRFEVPQMAPAPGQIAVFYEDDIVVGSGVI 357
>gi|293374251|ref|ZP_06620579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Turicibacter sanguinis PC909]
gi|292647084|gb|EFF65066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Turicibacter sanguinis PC909]
Length = 377
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 107/260 (41%), Gaps = 60/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIF----- 53
+D ++ DY+A GHYA V H + + KDQTYFLS L+QAQL + +F
Sbjct: 123 LDYAMNLGCDYIAMGHYARVSHEGEVQMLRGLDNNKDQTYFLSQLTQAQLSKTLFPVGEL 182
Query: 54 -------------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHR 82
+ + + +P + + G+ + +H
Sbjct: 183 QKSEVRAIAAKLDLATAKKKDSTGVCFIGERNFTQFLQNYLPAQPGQMRTLEGEVVGEHI 242
Query: 83 GFWFYTIGQHQELGLLYIV-YRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
G +YTIGQ + LG+ +V+ K++++N++ V + FD + + ++
Sbjct: 243 GLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQ---GFDHEYVYADEALVSNVNW 299
Query: 142 LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV-----------VQLSEDDQGLAAGQFAA 190
+P E+ Y C+ + + DI V V++ E + + GQ A
Sbjct: 300 IPSERFVGT----YRCTAKFRYRQ---PDIPVELTWIDDETLNVKMLEPVRAVTPGQAAV 352
Query: 191 FYQGRRCLGSGVILEAWDDQ 210
FY CLG G I A+ D+
Sbjct: 353 FYLDEVCLGGGRIEVAYKDK 372
>gi|225871462|ref|YP_002747409.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus equi subsp. equi
4047]
gi|254811462|sp|C0MB53.1|MNMA_STRE4 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|225700866|emb|CAW95613.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus equi subsp. equi 4047]
Length = 374
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 65/264 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV----------KDQTYFLSHLSQAQLRR 50
+D ++ DYVA+GHYA + +D+ V KDQTYFLS LSQ QL++
Sbjct: 114 LDYAMTLGADYVATGHYAQI------KRDENGVVHMLRGLDKGKDQTYFLSQLSQEQLQK 167
Query: 51 LIF---HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTI 89
+F HL I + + A+ D +L +G
Sbjct: 168 TMFPLGHLQKSEVRAIAEQAGLATAKKKDSTGICFISEKNFKTFLSHYLPAQKGRMMTVD 227
Query: 90 GQH--QELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRH 129
G+ + GL+Y +VV KD+ NI++V + +Y
Sbjct: 228 GRDMGEHAGLMYYTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMST 287
Query: 130 LFHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAA 185
A ++ +P E + + F + +T+ H + +D A V +E + +
Sbjct: 288 SLDASVIQFTREVPEEFTLECTAKFRYRQPDSKVTV-HVK---KDKAKVVFAEPQRAITP 343
Query: 186 GQFAAFYQGRRCLGSGVILEAWDD 209
GQ FY G CLG G+I A+ D
Sbjct: 344 GQAVVFYDGHECLGGGIIDMAYKD 367
>gi|205829105|sp|Q1JED4.2|MNMA_STRPD RecName: Full=tRNA-specific 2-thiouridylase MnmA
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 100/256 (39%), Gaps = 53/256 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYAQVKRDENGTVYMLRGADNGKDQTYFLSQLSQEQLQKTLFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL I + A+ D +L +G G+ +
Sbjct: 173 HLQKSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTIDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASV 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ ED E V +E + + GQ F
Sbjct: 293 IHFTREMPEEFTFECTAKFRYRQPDSQVTVHVREDKAE----VVFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAW 207
Y G+ CLG G+I A+
Sbjct: 349 YDGKECLGGGMIDMAY 364
>gi|399050517|ref|ZP_10740650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brevibacillus sp. CF112]
gi|433546350|ref|ZP_20502678.1| tRNA U34-sulfurtransferase [Brevibacillus agri BAB-2500]
gi|398051752|gb|EJL44064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Brevibacillus sp. CF112]
gi|432182380|gb|ELK39953.1| tRNA U34-sulfurtransferase [Brevibacillus agri BAB-2500]
Length = 370
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 97/242 (40%), Gaps = 51/242 (21%)
Query: 10 DYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V ++K + KDQTYFL+ L Q QL + +F + P+ +
Sbjct: 122 DYIATGHYAQVKFIDGEYKLIRGADNNKDQTYFLNVLGQEQLSKTMFPIGHLPKPEVRKI 181
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + +E GD + +H G +YT+G
Sbjct: 182 AEEAGLYTAKKKDSTGICFIGERNFREFLQNYLPAKPGNIETVDGDVIGQHDGLMYYTLG 241
Query: 91 QHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
Q Q LG+ + +VV+KD+E N++ V A + +S P
Sbjct: 242 QRQGLGIGGGHGKTGQPWFVVDKDLERNVLIVGEGSNHPRLYSSSLLATDVSWVSANKPT 301
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ + F + +T+ H +G + V +E + + GQ FY G CLG G
Sbjct: 302 ESFACTAKFRYRQPDQQVTV-HIREG--NTVEVVFAEPQKAVTPGQAVVFYDGEVCLGGG 358
Query: 202 VI 203
I
Sbjct: 359 TI 360
>gi|438000012|ref|YP_007183745.1| tRNA-specific 2-thiouridylase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451812941|ref|YP_007449394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
gi|429339246|gb|AFZ83668.1| tRNA-specific 2-thiouridylase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451778910|gb|AGF49790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
Length = 380
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 102/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
+D + +Y+A+GHYA + + + +V KDQ+YFL L+Q QL R IF L
Sbjct: 124 LDYCLQLGANYIATGHYARIKKIDSKYHLLKAVDLKKDQSYFLYRLNQEQLSRSIFPLGC 183
Query: 58 YPRLTI---------------PMEGIILEAET--GDFLEK-------------------H 81
+ + GI E FLEK H
Sbjct: 184 IQKTEVREIAREIGLHNFDKKDSTGICFIGEKFFSGFLEKFIPIKKGAILTLDGKEIGVH 243
Query: 82 RGFWFYTIGQHQELGLLYI------------VYRYVVEKDIENNIVFVSR--NYYSFDKK 127
+G FYT+GQ + LG+ I YV KD++NNI++V R N+ +
Sbjct: 244 KGVHFYTLGQRKGLGIGGIKDYNPSSNIFENAAWYVARKDLKNNILYVVRGKNHQLLNSN 303
Query: 128 RHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCE--DGGEDIAVVQLSEDDQGLAA 185
R A ++ ++ L P K + L+ C+ + ++ ++ E +
Sbjct: 304 R--LQAANIHWINELMPTKKNNLYHAKTRYRQIDSECKLLNLNDNEIEIEFKEKQWAITP 361
Query: 186 GQFAAFYQGRRCLGSGVI 203
GQ Y C+G G+I
Sbjct: 362 GQSVVIYDNDICMGGGII 379
>gi|195979019|ref|YP_002124263.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|229487422|sp|B4U0P1.1|MNMA_STREM RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|195975724|gb|ACG63250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
[Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 374
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 65/264 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV----------KDQTYFLSHLSQAQLRR 50
+D ++ DYVA+GHYA + +D+ V KDQTYFLS LSQ QL++
Sbjct: 114 LDYAMTLGADYVATGHYAQI------KRDENGVVHMLRGLDKGKDQTYFLSQLSQEQLQK 167
Query: 51 LIF---HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTI 89
+F HL I + + A+ D +L +G
Sbjct: 168 TMFPLGHLQKSEVRAIAEQAGLATAKKKDSTGICFIGEKNFKTFLSHYLPAQKGRMMTVD 227
Query: 90 GQH--QELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRH 129
G+ + GL+Y +VV KD+ NI++V + +Y
Sbjct: 228 GRDMGEHAGLMYYTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMST 287
Query: 130 LFHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAA 185
A ++ +P E + + F + +T+ H + +D A V +E + +
Sbjct: 288 SLDASVIQFTREVPEEFTLECTAKFRYRQPDSKVTV-HVK---KDKAKVVFAEPQRAITP 343
Query: 186 GQFAAFYQGRRCLGSGVILEAWDD 209
GQ FY G CLG G+I A+ D
Sbjct: 344 GQAVVFYDGHECLGGGIIDMAYKD 367
>gi|387880535|ref|YP_006310838.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis FW213]
gi|386793983|gb|AFJ27018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis FW213]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME---------------------------GIILEAETGDFLE-------K 80
+ P + E G L A+ G + +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTIDGRDMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRNMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|205829101|sp|B2IRK2.2|MNMA_STRPS RecName: Full=tRNA-specific 2-thiouridylase MnmA
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFTEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|450049941|ref|ZP_21840001.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NFSM1]
gi|449203196|gb|EMC04069.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NFSM1]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 106/264 (40%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ PR+ E GI E ++L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSNYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAG 186
+ +P +K + NC+ + + + D A V +E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFNEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYDGDECLGGGLIDNAYQEE 367
>gi|401886940|gb|EJT50951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Trichosporon asahii var. asahii CBS 2479]
Length = 371
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 90/239 (37%), Gaps = 54/239 (22%)
Query: 15 GHYANVVHS---SADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-------- 63
GHYA V S + H+ + KDQTY+LS + + QL + +F L P+ ++
Sbjct: 136 GHYARVKRSPDGATLHRALDANKDQTYYLSQVREEQLAKAVFPLAGIPKPSVRDLARHFN 195
Query: 64 -PME------GIILEAETGDF-----------------------LEKHRGFWFYTIGQHQ 93
P G+ E G F + HRG +YTIGQ
Sbjct: 196 LPTAEREESMGVCFIGERGKFGDFVSQYTSLAEPGYFVNLEGERMAPHRGNCYYTIGQRP 255
Query: 94 ELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQLHSV 153
LG L Y+ K + N + + + + ++G PPE I
Sbjct: 256 RLGGLPGGRWYIARKHVNGNDILLVQGADHPALYCEQLWSSDFNWIAGHPPEHID----- 310
Query: 154 FYNCSLTIEH-CEDGGEDIAV-----VQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206
N + I H E ++V V + +A GQ + G RCLGSGVI E
Sbjct: 311 --NALIQIRHRMEPVPGRVSVEGRVRVDFDKPVGAVAEGQIVGVWDGDRCLGSGVIEET 367
>gi|386345732|ref|YP_006041896.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Streptococcus thermophilus JIM 8232]
gi|339279193|emb|CCC20941.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Streptococcus thermophilus JIM 8232]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 103/260 (39%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKAMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYT----IGQ 91
HL I + A+ D +L +G +G+
Sbjct: 173 HLQKSEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 SMIHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKSE----VIFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|284047421|ref|YP_003397760.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Acidaminococcus fermentans DSM 20731]
gi|283951642|gb|ADB46445.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Acidaminococcus fermentans DSM 20731]
Length = 356
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 91/240 (37%), Gaps = 50/240 (20%)
Query: 10 DYVASGHYANVVHSSADHKDK-----PSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI- 63
D V +GHYA + + K + KDQ+Y L +L+Q QL F L Y +
Sbjct: 120 DCVVTGHYARIRKNETTGKYELLKALDPKKDQSYVLYNLTQEQLAHTCFPLGGYHKTHTR 179
Query: 64 --------------------------------------PMEGIILEAETGDFLEKHRGFW 85
P G L+ E G+ + +HRG
Sbjct: 180 EIAEENGFINSHKPDSQDICFVPNGQYTDAVQRILDYRPQPGPFLDLE-GNVIGQHRGII 238
Query: 86 FYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG-LP 143
+YT+GQH+ LGL + YVV+ D + N + V + F +K + G +SG +P
Sbjct: 239 YYTLGQHKHLGLNQPDFPLYVVKIDPKKNAIVVGPSEALFSRKASV---GEANWISGEVP 295
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ V Y G+D +Q E + + GQ A Y G LG G I
Sbjct: 296 AGPVRCQVKVRYRQDAQPATVTPTGKDTFTIQFDEPQRAITPGQAAVLYDGEVVLGGGTI 355
>gi|152981022|ref|YP_001352063.1| tRNA-specific 2-thiouridylase MnmA [Janthinobacterium sp.
Marseille]
gi|205816857|sp|A6SUW6.1|MNMA_JANMA RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|151281099|gb|ABR89509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Janthinobacterium sp. Marseille]
Length = 372
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 97/249 (38%), Gaps = 57/249 (22%)
Query: 10 DYVASGHYANV--VHSSADH------KDKPSVKDQTYFLSHLSQAQLRRLIFHL------ 55
D +A+GHYA V V S D K + KDQ+YFL L+QAQL + +F L
Sbjct: 119 DMIATGHYARVREVTSGPDAGRVELLKAVDASKDQSYFLHRLNQAQLAKTLFPLGEIRKT 178
Query: 56 ---VLYPRLTIP------MEGIILEAET---------------------GDFLEKHRGFW 85
+ +L +P GI E G + +H G
Sbjct: 179 EVRKIAEQLKLPNATKKDSTGICFIGERPFREFLNRYLSYQPGPMKTPEGVIVGEHVGLS 238
Query: 86 FYTIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
FYT+GQ + +GL + YV KD+ N +++ + + AG
Sbjct: 239 FYTLGQRKGIGLGGMKSHKNTDGNSEPWYVARKDVATNTLYIVQGHDHPWLLSSELSAGQ 298
Query: 136 LKLLSGLPP-EKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
+ ++G PP E++ + + + D D + + + GQ A YQG
Sbjct: 299 MSWVAGSPPSEELVSAKTRYRQADVACSQRSDA--DGFSLAFAAPQWAVTPGQSAVLYQG 356
Query: 195 RRCLGSGVI 203
CLG G+I
Sbjct: 357 DVCLGGGII 365
>gi|450158715|ref|ZP_21878997.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 66-2A]
gi|449241969|gb|EMC40576.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 66-2A]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 106/267 (39%), Gaps = 59/267 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ PR+ E GI E +L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLATAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + F + +T++ D E V E + + GQ
Sbjct: 291 SQVHFTHNMPDEFTLSCTAKFRYRQPDSQVTVKVKGDKAE----VIFDEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDDQGFPVCK 216
FY G+ C G G+I A+ ++ VC+
Sbjct: 347 VFYDGKECFGGGLIDNAYKEE--KVCQ 371
>gi|418183918|ref|ZP_12820468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47283]
gi|353852939|gb|EHE32924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47283]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|418095224|ref|ZP_12732340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA16531]
gi|353772004|gb|EHD52510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA16531]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|269123624|ref|YP_003306201.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Streptobacillus moniliformis DSM 12112]
gi|268314950|gb|ACZ01324.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Streptobacillus moniliformis DSM 12112]
Length = 359
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 99/250 (39%), Gaps = 51/250 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK----DKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D + + DY+A+GHYA + + K + KDQ+YFL L+Q QL +++F +
Sbjct: 109 LDYANKLGADYIATGHYARLTTNEKGEKVLLRGVDNNKDQSYFLCGLNQKQLEKVLFPIG 168
Query: 57 LYPRLTI---------------PMEGIILEAE---------------------TGDFLEK 80
Y + I GI E G+ L
Sbjct: 169 EYEKTEIRKIAEKYNLKTAKKKDSTGICFIGERNFNEFLSKYLPAKDGNIVDINGNILGS 228
Query: 81 HRGFWFYTIGQHQELGLLYIVY-----RYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ + +GL +VV+K++E N + V++ + + L A
Sbjct: 229 HHGLMYYTIGQRKGIGLGNTKEGTGEPYFVVDKNVEKNELIVAQGDDNLLYSKGLI-ANK 287
Query: 136 LKLLSG--LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
++ LP + + S I+ E ED + E + + GQ Y
Sbjct: 288 FNFINEIELPFRCTVKFRYRQNDVSAVIDKIE---EDRYQIIFDEKQRAVTLGQIVVLYD 344
Query: 194 GRRCLGSGVI 203
G +CLG G+I
Sbjct: 345 GEKCLGGGII 354
>gi|320160878|ref|YP_004174102.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerolinea thermophila UNI-1]
gi|319994731|dbj|BAJ63502.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerolinea thermophila UNI-1]
Length = 361
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 94/242 (38%), Gaps = 48/242 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLY--- 58
S+ + A+GHYA + + + KDQ+Y LS L Q QLR F + Y
Sbjct: 119 SLGATWFATGHYARLRRLESGEVQLLRGVDVEKDQSYVLSVLPQEQLRHTFFPVGEYHKP 178
Query: 59 ------PRLTIPM------------------------------EGIILEAETGDFLEKHR 82
R +P+ G+I+ + G+ L +H+
Sbjct: 179 EVRELARRFGLPVANRADSQDLCFLAGGDYRDFLSRHAPEVSRPGVIVNRQ-GEILGEHQ 237
Query: 83 GFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
G FYTIGQ + LG+ + YV+EKD+ N + V + + R A + +SG
Sbjct: 238 GLAFYTIGQRKGLGIAFPRPLYVLEKDVVRNRLVVGEEH---ELGRSTLIAERVNWISGQ 294
Query: 143 PPEKISQLH-SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
PP Q+ + Y D V+ + + GQ FYQG CLG G
Sbjct: 295 PPVSSIQVEVKIRYKAREAHGVVIPLTPDRVKVEFDHPLRDITPGQQCVFYQGEICLGGG 354
Query: 202 VI 203
I
Sbjct: 355 TI 356
>gi|33151616|ref|NP_872969.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus ducreyi 35000HP]
gi|71153355|sp|Q7U342.1|MNMA_HAEDU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|33147837|gb|AAP95358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Haemophilus ducreyi 35000HP]
Length = 384
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 106/264 (40%), Gaps = 81/264 (30%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDK------PSVKDQTYFLSHLSQAQLRRLIF--- 53
A + DY+A+GHY V SAD+++ + KDQ+YFL LS Q+ + +F
Sbjct: 134 AAEDLGADYIATGHY---VRRSADNENAQLLRGLDANKDQSYFLYTLSNQQVAKSLFPVG 190
Query: 54 ------------HLVLYPRLTIPMEGI--------------ILEAETGDF-------LEK 80
L L GI L A+ GD + +
Sbjct: 191 EIEKPMVRQIATDLGLVTAKKKDSTGICFIGERKFKEFLARFLPAQPGDISTVEGEIVGR 250
Query: 81 HRGFWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YT+GQ + LG+ L YVVEKD+ NN++ V++ H S
Sbjct: 251 HDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLVNNVLIVAQG-----------HDNS 299
Query: 136 LKLLSGLPPEKISQLHSV-------FYNCSLTIEHCEDG---------GEDIAVVQLSED 179
L +GL +QLH V C++ + + E+I V+ E
Sbjct: 300 ALLSTGLIA---NQLHWVDRKTIGDTLRCTVKTRYRQTDIACLVEPIDAENIRVI-FDEP 355
Query: 180 DQGLAAGQFAAFYQGRRCLGSGVI 203
+ GQ A FYQG CLG GVI
Sbjct: 356 QIAVTPGQSAVFYQGEVCLGGGVI 379
>gi|400291141|ref|ZP_10793168.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus ratti FA-1 = DSM
20564]
gi|399921932|gb|EJN94749.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus ratti FA-1 = DSM
20564]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 108/270 (40%), Gaps = 65/270 (24%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D ++ DYVA+GHYA V VH AD+ KDQTYFLS LSQ QL+++
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDEDGTVHMLRGADNN-----KDQTYFLSQLSQEQLQKV 167
Query: 52 IFHL--VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIG 90
+F L + P++ E GI E ++L +G G
Sbjct: 168 MFPLGHLQKPQVREIAEKAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQKGRMMTVDG 227
Query: 91 QHQ--ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHL 130
+ GL+Y +VV KD+ NI++V + +Y
Sbjct: 228 RDMGGHNGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTS 287
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A + +P E + + F + +T++ D E V E + + G
Sbjct: 288 LTASQVHFTHDMPNEFTLECTAKFRYRQPDSQVTVKVKGDKAE----VIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQGFPVCK 216
Q FY G CLG G+I A+ QG VC+
Sbjct: 344 QAVVFYDGDECLGGGLIDNAY--QGEKVCQ 371
>gi|94544976|gb|ABF35024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pyogenes MGAS10270]
Length = 379
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 100/256 (39%), Gaps = 53/256 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 119 LDYAMTLGADYVATGHYAQVKRDENGTVYMLRGADNGKDQTYFLSQLSQEQLQKTLFPLG 178
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL I + A+ D +L +G G+ +
Sbjct: 179 HLQKSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTIDGRDMGE 238
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 239 HAGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASV 298
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ ED E V +E + + GQ F
Sbjct: 299 IHFTREMPEEFTFECTAKFRYRQPDSQVTVHVREDKAE----VVFAEPQRAITPGQAVVF 354
Query: 192 YQGRRCLGSGVILEAW 207
Y G+ CLG G+I A+
Sbjct: 355 YDGKECLGGGMIDMAY 370
>gi|168487074|ref|ZP_02711582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CDC1087-00]
gi|417697612|ref|ZP_12346785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41317]
gi|418147623|ref|ZP_12784390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13856]
gi|419452223|ref|ZP_13992198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae EU-NP03]
gi|419505135|ref|ZP_14044796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA49194]
gi|419509472|ref|ZP_14049117.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae NP141]
gi|419529377|ref|ZP_14068912.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA40028]
gi|421214249|ref|ZP_15671196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070108]
gi|421214265|ref|ZP_15671210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070108]
gi|421214398|ref|ZP_15671335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070109]
gi|421237597|ref|ZP_15694170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2071247]
gi|421244044|ref|ZP_15700549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2081685]
gi|183570004|gb|EDT90532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CDC1087-00]
gi|332202053|gb|EGJ16122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41317]
gi|353813821|gb|EHD94048.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13856]
gi|379576281|gb|EHZ41209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA40028]
gi|379607049|gb|EHZ71795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA49194]
gi|379628186|gb|EHZ92790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae EU-NP03]
gi|379634658|gb|EHZ99222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae NP141]
gi|395577506|gb|EJG38046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070108]
gi|395577740|gb|EJG38276.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070108]
gi|395583579|gb|EJG44023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070109]
gi|395605123|gb|EJG65254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2071247]
gi|395611010|gb|EJG71084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2081685]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|55821970|ref|YP_140412.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus LMG
18311]
gi|55823887|ref|YP_142328.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus
CNRZ1066]
gi|386087603|ref|YP_006003477.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
contains the PP-loop ATPase domain [Streptococcus
thermophilus ND03]
gi|387910697|ref|YP_006341003.1| trNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus
MN-ZLW-002]
gi|81558821|sp|Q5LXJ9.1|MNMA_STRT1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|81560008|sp|Q5M249.1|MNMA_STRT2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|55737955|gb|AAV61597.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Streptococcus thermophilus LMG 18311]
gi|55739872|gb|AAV63513.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
[Streptococcus thermophilus CNRZ1066]
gi|312279316|gb|ADQ63973.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Streptococcus thermophilus ND03]
gi|387575632|gb|AFJ84338.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus
MN-ZLW-002]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 104/260 (40%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ P + E GI E +L +G +G+
Sbjct: 173 HLQKPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + ++ A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F + +T++ D E V +E + + GQ
Sbjct: 291 SMIHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKSE----VIFAEPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAWDD 209
FY G+ CLG G+I +A+ D
Sbjct: 347 VFYDGQECLGGGIIDQAYKD 366
>gi|399545415|ref|YP_006558723.1| tRNA-specific 2-thiouridylase mnmA [Marinobacter sp. BSs20148]
gi|399160747|gb|AFP31310.1| tRNA-specific 2-thiouridylase mnmA [Marinobacter sp. BSs20148]
Length = 381
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 102/266 (38%), Gaps = 67/266 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A+GHY D K + KDQ+YFL +S ++ R +F
Sbjct: 108 LDYAITLGADYIATGHYTRQCPLD-DGSGKVQLLKGLDGNKDQSYFLHAVSGDRIARTLF 166
Query: 54 ------------------------------------HLVLYPRLTIPMEGIILEAETGDF 77
+ + +P + +E GD
Sbjct: 167 PVGELEKPEVRRIAEAQGFVTHDKKDSTGICFIGERKFTDFLKQYLPAQPGTIETPEGDI 226
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRH--L 130
+ +H+G ++TIGQ Q LG+ + YV EKD+ N++ ++ K H L
Sbjct: 227 VGRHQGLMYHTIGQRQGLGIGGLNGYSDEPWYVAEKDLARNVLIAAQG------KNHPLL 280
Query: 131 FHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEH------CEDGGEDIAVVQLSEDDQ-GL 183
F G L+SG ++ S + C + CE D V + +D Q +
Sbjct: 281 FSRG---LVSGPVDWVAAEAPSAKFRCMAKTRYRQPDQLCEVTAIDGGVKVVFDDAQRAV 337
Query: 184 AAGQFAAFYQGRRCLGSGVILEAWDD 209
GQ FY G CLG GVI W D
Sbjct: 338 TPGQSVVFYDGEICLGGGVIEHTWRD 363
>gi|322390500|ref|ZP_08064018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis ATCC 903]
gi|321142774|gb|EFX38234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parasanguinis ATCC 903]
Length = 373
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 105/256 (41%), Gaps = 53/256 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME---------------------------GIILEAETGDFLE-------K 80
+ P + E G L A+ G + +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTIDGRDMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASM 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E V +E + + GQ F
Sbjct: 293 IHFTRDMPEEFEMECTAKFRYRQPDSKVTVKVKGDKAE----VIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAW 207
Y G+ CLG G+I +A+
Sbjct: 349 YDGQECLGGGIIDQAY 364
>gi|51893527|ref|YP_076218.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Symbiobacterium thermophilum IAM 14863]
gi|81388362|sp|Q67LS2.1|MNMA_SYMTH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|51857216|dbj|BAD41374.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Symbiobacterium thermophilum IAM 14863]
Length = 390
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 102/262 (38%), Gaps = 70/262 (26%)
Query: 1 MDAISSMEFDYVASGHYANV-----------VHSSADHKDKPSVKDQTYFLSHLSQAQLR 49
++ +E DYVA+GHYA + + SAD + KDQTY L +L+Q L
Sbjct: 141 LEKAKQLECDYVATGHYAVIGQDDRFPGRWLLGKSADAR-----KDQTYVLHNLTQEALA 195
Query: 50 RLIF---HL--------------------------VLY------------PRLTIPMEGI 68
+F HL +Y P +P G
Sbjct: 196 HTLFPVGHLQKSEVRALAAKYGFVTADKPDSQEICFVYDNDYGRFLKERAPEAIVP--GP 253
Query: 69 ILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKR 128
IL G+ + +H+G YTIGQ + LGL YVV+ D+E N V V + ++ R
Sbjct: 254 ILNTR-GEVIGQHQGLPLYTIGQRKGLGLTTPRPVYVVDLDVERNAVIVGEDEETY---R 309
Query: 129 HLFHAGSLKLLS--GL--PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLA 184
A L ++ GL P +++ + TI GED V+ + +
Sbjct: 310 GGLVASDLNWIAIPGLTFPRRCRAKIRRMAPEAECTIYPI---GEDAVRVEFDRPQRAIT 366
Query: 185 AGQFAAFYQGRRCLGSGVILEA 206
GQ FY G LG G I A
Sbjct: 367 PGQAVVFYDGDWVLGGGTIERA 388
>gi|365925123|ref|ZP_09447886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420266452|ref|ZP_14768918.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394425366|gb|EJE98350.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 375
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 111/262 (42%), Gaps = 63/262 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DY+A GHYA + + + + S KDQTYFLS LSQ QL + +F +
Sbjct: 113 LDYAMKLDADYIAMGHYAQIRRDADGYVHLLRGTDSNKDQTYFLSQLSQEQLDKAMFPIG 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
+ P + +P + ++ G+
Sbjct: 173 NLEKPEVRRIAEEAGLATAKKKDSTGVCFIGERNFSKFLNEFLPAKSGKMKTFDGEIKGD 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G YTIGQ + LG+ +VV KD+ N ++V + Y++ HL+ A SL
Sbjct: 233 HYGLMNYTIGQRKGLGIGGDGQSNEPWFVVGKDLSTNTLYVGQGYHN----EHLY-ADSL 287
Query: 137 --KLLSGLPPEKISQLHSVFYNCSLTIEHCE-DGG------EDIAVVQLSEDD--QGLAA 185
+S + P + L ++C+ + + D G ED + V++ D+ + +
Sbjct: 288 DGSKISFIAPIEDRGLE---FHCTAKFRYRQKDTGVTVFLNEDYSKVRVEFDEPVRAITP 344
Query: 186 GQFAAFYQGRRCLGSGVILEAW 207
GQ FY G CLGS I A+
Sbjct: 345 GQEVVFYDGDECLGSATIDRAY 366
>gi|308234530|ref|ZP_07665267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Atopobium vaginae DSM 15829]
Length = 410
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 98/246 (39%), Gaps = 62/246 (25%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPM 65
D++A+GHYA V H + KDQTYFL ++ + L + IF + I
Sbjct: 165 DFIATGHYARVYTDRHSHVHLLRAADEHKDQTYFLWRVNPSLLEKTIFPIGSIASKEIVR 224
Query: 66 E--------------------------------------GIILEAETGDFLEKHRGFWFY 87
+ G I+E ETG+ L H G + Y
Sbjct: 225 QMCATRGLGIESKPDSDGICFIGEVGIRTFLLDTLSKRAGDIIEWETGNVLGHHDGAFLY 284
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + L L RYVV D E N V+V+ N D + LL+ E I
Sbjct: 285 TIGQRKGLNLGGGPARYVVGTDTERNRVYVTANTKCPDLWCQTMVLDDVYLLN----ESI 340
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQ----------GLAAGQFAAFYQGRRC 197
+ H+++ + + H G V+L D + +AAGQ A YQG+ C
Sbjct: 341 DE-HALY---QVRLRHT--GKLQDVHVKLIHDHKIELHFESAVPKIAAGQSAVIYQGKIC 394
Query: 198 LGSGVI 203
+G G+I
Sbjct: 395 VGGGII 400
>gi|417937347|ref|ZP_12580650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantis X]
gi|343398798|gb|EGV11326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantis X]
Length = 373
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E I + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFILECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|450180768|ref|ZP_21887404.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 24]
gi|449247913|gb|EMC46181.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 24]
Length = 373
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 108/264 (40%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLT-IPMEGIILEAETGD------------------FLEKHRGFWFYT----IGQ 91
+ PR+ I + ++ A+ D +L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAG 186
+ +P +K + NC+ + + + D A V +E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFNEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYDGDECLGGGLIDNAYQEE 367
>gi|325915390|ref|ZP_08177707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas vesicatoria ATCC 35937]
gi|325538437|gb|EGD10116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas vesicatoria ATCC 35937]
Length = 378
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA ++ + +A+GHYA V + + KDQ+YFL L Q QL +F +
Sbjct: 109 LDAAQALGAERIATGHYAQVAYRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATVFPIGD 168
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
+ T+ P G L A TG+ + H
Sbjct: 169 LEKSTLRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIADH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSQWLQSEQA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + T++ +DG V+ + + GQ Y
Sbjct: 289 HWVTGAPPARRFTCTAQTRYRQPDEPCTVDVQDDGS---VQVRFERPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
G CLG VI
Sbjct: 346 DGEECLGGAVI 356
>gi|340750753|ref|ZP_08687590.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium mortiferum ATCC
9817]
gi|229420385|gb|EEO35432.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium mortiferum ATCC
9817]
Length = 357
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 105/249 (42%), Gaps = 50/249 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL----- 55
+D S D++A+GHY + D P+ KDQ YFLS +++ L+ L+F +
Sbjct: 114 IDFARSKGADFMATGHYTQLKDGVLSMGDDPN-KDQVYFLSQINKENLKYLMFPIGDLEK 172
Query: 56 ----VLYPRLTI-----------------PMEGIILE-------------AETGDFLEKH 81
L +L + ++ +LE G L KH
Sbjct: 173 PKVRELAEQLGVRVYAKKDSQEICFVEDGKLKEFLLENTKGRAGKKGNIVTTDGKVLGKH 232
Query: 82 RGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFD-----KKRHLFHAGSL 136
G FYTIGQ + LG+ YV+E D +NN V V N F + +L L
Sbjct: 233 NGLAFYTIGQRKGLGISQEKPLYVIELDSKNNNVIVGDNEQLFKGELIAENVNLISFDRL 292
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY-QGR 195
+ L+G+ ++ + C L E E+G ++ V + + + + GQ FY + +
Sbjct: 293 EELNGVVCWAKTRSRDKLHKCQL--EVLENG--NVKVRFIEDKVRAVTPGQGVVFYNEEK 348
Query: 196 RCLGSGVIL 204
+ LGSG I+
Sbjct: 349 KVLGSGFII 357
>gi|237749060|ref|ZP_04579540.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13]
gi|229380422|gb|EEO30513.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13]
Length = 367
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 97/252 (38%), Gaps = 49/252 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL-- 55
+D S+ + +A+GHYA V ++ + +V KDQ+YFL L+Q QL + IF L
Sbjct: 110 LDHAVSLGAEQIATGHYARVRENNGLFELMKAVDDTKDQSYFLHRLNQKQLSKAIFPLGE 169
Query: 56 -------VLYPRLTIP------MEGIILEAET---------------------GDFLEKH 81
+ +L +P GI E G + +H
Sbjct: 170 IRKTEVRKIAEKLGLPNAKKKDSTGICFIGERPFRAFLNRYLSYEPGPIKTPEGKEIGQH 229
Query: 82 RGFWFYTIGQHQELGLLYIV----------YRYVVEKDIENNIVFVSRNYYSFDKKRHLF 131
G FYTIGQ + +G+ + YV KDI+NN ++V + +
Sbjct: 230 VGLSFYTIGQRKGIGIGGLKSFKNPDGTSDAWYVARKDIQNNTLYVVQGHDHPWLLSPEL 289
Query: 132 HAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
A ++G PE + Y G+D V + GQ A F
Sbjct: 290 IATQSSWIAGFSPENQALSVKTRYRQKDVAGTLNVKGDDAFSVNFDAPQWAVTPGQSAVF 349
Query: 192 YQGRRCLGSGVI 203
Y+G CLG G+I
Sbjct: 350 YKGDVCLGGGII 361
>gi|158319927|ref|YP_001512434.1| tRNA-specific 2-thiouridylase MnmA [Alkaliphilus oremlandii OhILAs]
gi|205811148|sp|A8MEV9.1|MNMA_ALKOO RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|158140126|gb|ABW18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alkaliphilus oremlandii OhILAs]
Length = 364
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 49/249 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---H 54
+D + DY+A+GHYA V +S +++ V KDQTYFL+ L+Q QL + +F H
Sbjct: 114 LDHAIKLGADYLATGHYAQVDYSDGEYRLLRGVDTNKDQTYFLNQLNQYQLSKAMFPVGH 173
Query: 55 LVLYPRLTIPMEGIILEAETGD--------------FLE-------------------KH 81
L I ++ + A D FL KH
Sbjct: 174 LQKKDLRQIALDAGLATASKKDSTGICFIGERNFKEFLSNYLPAKPGKIISLDGEVKGKH 233
Query: 82 RGFWFYTIGQHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
G +YT+GQ + LG+ +VV+KD+E NI++V++ L+
Sbjct: 234 DGLMYYTLGQRKGLGIGGAGTGEPWFVVDKDLEKNILYVTQGETHPSLYSRGLIGADLQW 293
Query: 139 LSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
+S P + + + F + +T+ + E+G + V E + + GQ FY G
Sbjct: 294 VSENPKPSVIKCTAKFRYRQPDQGVTV-YVEEG--NTCRVMFDEPQKAITPGQAVVFYDG 350
Query: 195 RRCLGSGVI 203
CLG I
Sbjct: 351 VVCLGGATI 359
>gi|387929844|ref|ZP_10132521.1| tRNA-specific 2-thiouridylase MnmA [Bacillus methanolicus PB1]
gi|387586662|gb|EIJ78986.1| tRNA-specific 2-thiouridylase MnmA [Bacillus methanolicus PB1]
Length = 371
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 55/242 (22%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA V + +HK + KDQTYFL+ L+ L +++F + + +
Sbjct: 123 DYLATGHYARVEYRDGEHKMLRGLDENKDQTYFLNQLTSDTLEKVMFPIGNLEKSKVREI 182
Query: 64 ---------------------------------PMEGIILEAETGDFLEKHRGFWFYTIG 90
P + +E G+ KH G +YTIG
Sbjct: 183 AKEAGLATASKKDSTGICFIGERNFKEFLSSYLPAQPGNMETIDGEVKGKHDGLMYYTIG 242
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLF----HAGSLKLLSG-LPP 144
Q LG+ +V+ KD+E N+++V + FD + HL+ +A ++ +S P
Sbjct: 243 QRHGLGIGGSGEPWFVIGKDLERNVLYVGQ---GFDNE-HLYSDSINATNVSWVSKHAKP 298
Query: 145 EKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
E+ Y + +T++ DG + A V E + + GQ FY G CLG G
Sbjct: 299 EEFECTAKFRYRQPDNKVTVQ-LMDGNK--ARVVFHEPVRAVTPGQAVVFYNGEECLGGG 355
Query: 202 VI 203
I
Sbjct: 356 TI 357
>gi|289523006|ref|ZP_06439860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503549|gb|EFD24713.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 351
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 94/251 (37%), Gaps = 49/251 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
D ++ D+VA+GHYA + ++ + + K+Q+Y L L + L +IF L
Sbjct: 103 FDLLNCYNSDFVATGHYAKIYKDDLNYHLVRGRDPKKEQSYMLYRLPKNWLSSVIFPLGD 162
Query: 56 --------------------------------------VLYPRLTIPMEGIILEAETGDF 77
L R+ + EG IL + G+F
Sbjct: 163 LTKAEVKKKAREIFGNIFDDVEESADLCFLRRDETLRDFLSSRIDV-KEGPILSLQ-GEF 220
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK 137
L HRG +YT+GQ + LGL + YV E + N + V R D +R S
Sbjct: 221 LGSHRGIGYYTVGQREGLGLPNGPW-YVSEINASENALIVGRKE---DLQRRFIKCYSPH 276
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
L G K+ + + + G E V L G+A GQ Y GR
Sbjct: 277 WLEGPEVGKVYSAQHRYKATPKPVALTDSGEEGFTVKALESPFWGVAPGQSLVLYDGRVV 336
Query: 198 LGSGVILEAWD 208
+G G+I D
Sbjct: 337 VGGGIIAGCSD 347
>gi|449942092|ref|ZP_21805853.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 11A1]
gi|449966020|ref|ZP_21812163.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 15VF2]
gi|450030089|ref|ZP_21833056.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans G123]
gi|450065891|ref|ZP_21845690.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NLML9]
gi|450093455|ref|ZP_21856611.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans W6]
gi|450150532|ref|ZP_21876619.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 14D]
gi|449151166|gb|EMB54908.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 11A1]
gi|449170508|gb|EMB73211.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 15VF2]
gi|449193418|gb|EMB94802.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans G123]
gi|449209478|gb|EMC09997.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NLML9]
gi|449217207|gb|EMC17276.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans W6]
gi|449233510|gb|EMC32580.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 14D]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ PR+ E GI E ++L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAG 186
+ +P +K + NC+ + + + D A V E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYDGDECLGGGLIDNAYQEE 367
>gi|452203575|ref|YP_007483708.1| tRNA-specific 2-thiouridylase [Dehalococcoides mccartyi DCMB5]
gi|452110634|gb|AGG06366.1| tRNA-specific 2-thiouridylase [Dehalococcoides mccartyi DCMB5]
Length = 357
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 102/253 (40%), Gaps = 54/253 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHS--------SADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
++ I + DY+A+GHYA +V AD K KDQ+YFL L L RL+
Sbjct: 112 LNKIQDFKADYLATGHYARIVSDENGTHLLRGADEK-----KDQSYFLYTLPPESLSRLM 166
Query: 53 FHL---------VLYPRLTIPME---------------------------GIILEAETGD 76
F L L + +P+ G IL+ TG
Sbjct: 167 FPLGQKYKKDIVRLATNMKLPVSQKESQDVCFIPDGDYKSFLATRMGFTPGKILDT-TGK 225
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
L +H+G YT+GQ Q LGL +V + + + N + V+ + + + + + +
Sbjct: 226 ILGEHQGLPLYTVGQRQGLGLASNEKLFVSDMNADANTITVAGHDQLYTSR--ILLSNFI 283
Query: 137 KLLSGLPPEKISQLHSVFYNCSLT-IEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
SG+PP+ + V Y + ++ G D +++L+ +GQ A Y
Sbjct: 284 WRESGIPPDTSGMIVKVRYKAAPAEVKKISQSG-DFYILELASPVWAATSGQAAVIYLDD 342
Query: 196 RCLGSGVILEAWD 208
LG G+I D
Sbjct: 343 MVLGGGIIESGGD 355
>gi|449915991|ref|ZP_21796622.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 15JP3]
gi|449155752|gb|EMB59247.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 15JP3]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 107/264 (40%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLT-IPMEGIILEAETGD------------------FLEKHRGFWFYT----IGQ 91
+ PR+ I + ++ A+ D +L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAG 186
+ +P +K + NC+ + + + D A V E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVTVNVNGDKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYNGDECLGGGLIDNAYQEE 367
>gi|407792892|ref|ZP_11139928.1| tRNA-specific 2-thiouridylase MnmA [Idiomarina xiamenensis 10-D-4]
gi|407217150|gb|EKE86986.1| tRNA-specific 2-thiouridylase MnmA [Idiomarina xiamenensis 10-D-4]
Length = 407
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 106/268 (39%), Gaps = 69/268 (25%)
Query: 3 AISSMEFDYVASGHY----ANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRL 51
A+ + DY+A+GHY + H++ D D + KDQ+YFL LS AQL R
Sbjct: 143 ALEVHDADYIATGHYVQRSSASAHANPDQADTVQMLRGLDGNKDQSYFLYTLSSAQLART 202
Query: 52 IFHLVLYPRLTI------------------------------------PMEGIILEAETG 75
+F + + T+ P + +++ G
Sbjct: 203 LFPVGHLEKPTVREIAEAQGLVTADKKDSTGICFIGERKFSDFLQRFLPAQPGPIKSVDG 262
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYR--------YVVEKDIENNIVFVSRNYYSFDKK 127
+ L +H+G ++T+GQ + L+I R YVV+KD++NN++ V++ +
Sbjct: 263 ELLGEHQGLMYHTLGQRKG---LHIGGRADSNGEAWYVVDKDVQNNVLLVAQGHDHPRLY 319
Query: 128 RHLFHAGSLKLLSGLPPEKISQL------HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQ 181
H L ++ P +QL C + + + D A E
Sbjct: 320 SHGMVVNQLHWVAAHGPADNAQLTVKTRYRQADIGCRVQRLNTQQWQVDFA-----EPVA 374
Query: 182 GLAAGQFAAFYQGRRCLGSGVILEAWDD 209
+ GQ A FY G CLG G+I + D
Sbjct: 375 AVTPGQSAVFYSGDVCLGGGIIEQRCSD 402
>gi|449969130|ref|ZP_21813037.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 2VS1]
gi|450056322|ref|ZP_21841975.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NLML4]
gi|450166370|ref|ZP_21882307.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans B]
gi|449174432|gb|EMB76922.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 2VS1]
gi|449206933|gb|EMC07621.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NLML4]
gi|449239770|gb|EMC38477.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans B]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ PR+ E GI E ++L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAG 186
+ +P +K + NC+ + + + D A V E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYDGDECLGGGLIDNAYQEE 367
>gi|365851148|ref|ZP_09391589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus parafarraginis F0439]
gi|363717347|gb|EHM00725.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus parafarraginis F0439]
Length = 374
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 50/255 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DY+A+GHYA + H + KDQTYFLS LS Q+ R++F +
Sbjct: 113 LDYALELGADYIATGHYAQLTRDEDGHNHLLRAVDGNKDQTYFLSQLSADQIDRVMFPIG 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
++ P + +P + G+
Sbjct: 173 NLVKPEVREIARKAGLATADKKDSVGICFIGEKNFKNFLGHYLPATPGKMMTVDGEVKGT 232
Query: 81 HRGFWFYTIGQHQELGL----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ + +VV KD++ NI++V + Y++ A +
Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKKNILYVGKGYHNELLYADYLEASDI 292
Query: 137 KLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++ L + + F + +T+ DG V + + GQ FY
Sbjct: 293 HWVNNLDRGQDFHCTAKFRYRQKDTGVTVHLSADGKS--VRVDFDAPVRAITPGQAVVFY 350
Query: 193 QGRRCLGSGVILEAW 207
G CLGS +I A+
Sbjct: 351 DGDECLGSAIIDAAY 365
>gi|119503231|ref|ZP_01625315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[marine gamma proteobacterium HTCC2080]
gi|119460877|gb|EAW41968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[marine gamma proteobacterium HTCC2080]
Length = 363
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 102/251 (40%), Gaps = 52/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHS---SADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+D + + D++A+GHY S +A K KDQ+YFL + +L R +F +
Sbjct: 113 LDYATELGADFIATGHYVRRDDSGERTALLKGLDPDKDQSYFLHQVGHRELSRSLFPVGD 172
Query: 56 VLYPRLT----------------------------------IPMEGIILEAETGDFLEKH 81
+ P + +P + ++E G L +H
Sbjct: 173 LAKPEVRKIAEQAGLTTARKKDSTGICFIGERRFKDFLQQYLPAQPGVIEDTNGQALGEH 232
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
+G ++TIGQ Q LG+ + R YVVEK +E N++ V++ +H HA +L
Sbjct: 233 QGLMYHTIGQRQGLGIGGLADRNAAPWYVVEKHVERNVLIVAQGNDHPRLYKHSLHASTL 292
Query: 137 KLLS----GLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+S P + +++ + S + G +V+ + + GQ FY
Sbjct: 293 FWISEQAPTFPLQCTAKVRYRQPDQSCVVTKTASG----FLVEFDVPQRAITPGQSVVFY 348
Query: 193 QGRRCLGSGVI 203
C+G G+I
Sbjct: 349 HNDTCMGGGII 359
>gi|401681803|ref|ZP_10813699.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. AS14]
gi|400185808|gb|EJO20033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. AS14]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 57/254 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDEDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D AVV + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAVVNFDQPQRAVTPGQAV 346
Query: 190 AFYQGRRCLGSGVI 203
FY G CLG G+I
Sbjct: 347 VFYDGDECLGGGLI 360
>gi|237746906|ref|ZP_04577386.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS]
gi|229378257|gb|EEO28348.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS]
Length = 369
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 97/257 (37%), Gaps = 59/257 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+D S+ + +A+GHYA V ++ K KDQ+YFL L+Q QL + IF L
Sbjct: 110 LDHAISLGAERIATGHYARVRENNGFFELLKAVDDTKDQSYFLHRLNQQQLSKTIFPLGE 169
Query: 56 -------VLYPRLTIP------MEGIILEAET---------------------GDFLEKH 81
+ ++ +P GI E GD + +H
Sbjct: 170 IRKTEVRQIAEKIGLPNAKKKDSTGICFIGERPFRAFLNRYLSYEPGPIKTPEGDEIGQH 229
Query: 82 RGFWFYTIGQHQELGL--LYIVYR--------YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
G FYTIGQ + +G+ L R YV KD NN ++V + +
Sbjct: 230 VGLSFYTIGQRKGIGIGGLKSFRRPDGTSDAWYVARKDTHNNTLYVVQGHDHPWLLSPSL 289
Query: 132 HAGSLKLLSGLPPEKISQLHSVFYN-----CSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
AG ++G+ PE Y C L + G + + G
Sbjct: 290 EAGQSSWIAGISPEDGELSVKTRYRQKDVPCVLNVT-----GNSELTASFEKPQWAITPG 344
Query: 187 QFAAFYQGRRCLGSGVI 203
Q A FY+G CLG G+I
Sbjct: 345 QSAVFYKGNVCLGGGII 361
>gi|149010994|ref|ZP_01832299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP19-BS75]
gi|421216515|ref|ZP_15673418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070335]
gi|147764630|gb|EDK71560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP19-BS75]
gi|395585553|gb|EJG45932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070335]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DEAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|332284783|ref|YP_004416694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pusillimonas sp. T7-7]
gi|330428736|gb|AEC20070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pusillimonas sp. T7-7]
Length = 379
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 99/257 (38%), Gaps = 53/257 (20%)
Query: 1 MDAISSMEFDYVASGHYANV----VHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF 53
+D ++ DY+A+GHYA V + H+ ++ KDQ+YFL L+QAQL R +F
Sbjct: 123 LDHAMTLGADYIATGHYARVRSIQTPNGTQHQLLKALDLSKDQSYFLHRLNQAQLARTLF 182
Query: 54 HLVLYPRLTI------------------------------------PMEGIILEAETGDF 77
L P+ + P ++ G
Sbjct: 183 PLGEIPKTEVRRLAQELQLPNAAKKDSTGICFIGERPFREFLNRYLPTHAGPIKTPEGVV 242
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFDKK 127
+ +H+G FYT+GQ + LG+ + R Y KD+++N ++V + +
Sbjct: 243 VGEHQGLSFYTLGQRKGLGIGGVKGRQRDDGTADAWYTARKDLDSNTLYVVQGHDHPWLL 302
Query: 128 RHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
+A ++G PE S Y + + + + E+ + GQ
Sbjct: 303 ASSLNAQDASWVAGYAPEPGSYAAKSRYRQADAVCALAGVSGNRFSLAFQEEQWAVTPGQ 362
Query: 188 FAAFYQGRRCLGSGVIL 204
A Y CLG G+I+
Sbjct: 363 SAVLYDKDVCLGGGIII 379
>gi|422872045|ref|ZP_16918538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1087]
gi|328945150|gb|EGG39305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sanguinis SK1087]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 57/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + K + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYALTLGADYVATGHYAQVKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GI--ILEAETGDFLEKH------RGFWFYTIGQHQ 93
+ P + E GI I E +FL ++ R Q
Sbjct: 173 HLEKPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLPAQPGRMMTLEGRDMGQ 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ +P E + + F ++T++ D A V + + + GQ
Sbjct: 293 VHFTKEMPEEFTMECTAKFRYRQPDSKVTVTVKG------DKAAVNFDQPQRAITPGQAV 346
Query: 190 AFYQGRRCLGSGVILEAW 207
FY G CLG G+I A+
Sbjct: 347 VFYDGDECLGGGLIDRAY 364
>gi|424794159|ref|ZP_18220166.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
methyltransferase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796124|gb|EKU24696.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
methyltransferase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 379
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
+DA + + +A+GHYA V + + + KDQ+YFL L QAQL +F +
Sbjct: 109 LDAARELGAERIATGHYARVAFADGRWRLLRGLDRNKDQSYFLHQLGQAQLAATLFPVGE 168
Query: 58 YPR---------LTIPME--------------------GIILEAETGDF-------LEKH 81
P+ +P G L A G+ + +H
Sbjct: 169 LPKEQVRRIAREAGLPTHAKKDSTGICFIGERDFREFLGRYLPARRGEIRDPQEQVVAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ N+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVARNVLYVDQDRDSPHLMSTQLQSEAA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G P + +Q + T+E +DG V+ + + + GQ Y
Sbjct: 289 HWIAGSAPARRFDCTAQTRYRQADEPCTVEVTDDG---TLAVRFARAQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
QG CLG VI
Sbjct: 346 QGDNCLGGAVI 356
>gi|339444207|ref|YP_004710211.1| hypothetical protein EGYY_05970 [Eggerthella sp. YY7918]
gi|338903959|dbj|BAK43810.1| hypothetical protein EGYY_05970 [Eggerthella sp. YY7918]
Length = 355
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 98/247 (39%), Gaps = 63/247 (25%)
Query: 10 DYVASGHYANVVH----------SSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL---- 55
D +A+GHYA +V+ ++ D + KDQ+Y L+ LSQ QL RL+ L
Sbjct: 117 DRIATGHYARIVYLKECGRFSVKTALDAR-----KDQSYMLALLSQEQLARLVLPLGAVT 171
Query: 56 -----VLYPRLTIPM-------EGIILEAETGDFLE--------------------KHRG 83
VL L +P+ + +E + DFL +H G
Sbjct: 172 KAEVRVLAADLELPVAEKPESQDNCFVEGDYRDFLRARGVVDAPGNIVDGAGRVLGRHTG 231
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFD-----KKRHLFHAGSLKL 138
YT+GQ + +G+ YVVEK + + V + + K+ + GSL
Sbjct: 232 LANYTVGQRKGIGIAAEEPYYVVEKRVATGELVVGFAHEALASAVRVKRMNWLAGGSLDD 291
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
P + + +L Y E G D+ + L A GQ+A Y+G L
Sbjct: 292 ----PRDALVKLR---YRSRAVPCIIEPEGSDVVRIALRSPQPTTAPGQYAVLYEGDTVL 344
Query: 199 GSGVILE 205
G G+I E
Sbjct: 345 GGGMIEE 351
>gi|24380473|ref|NP_722428.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans UA159]
gi|397650666|ref|YP_006491193.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans GS-5]
gi|449864731|ref|ZP_21778589.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans U2B]
gi|449869423|ref|ZP_21780070.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 8ID3]
gi|449891386|ref|ZP_21787895.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SF12]
gi|449897735|ref|ZP_21790159.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans R221]
gi|449904280|ref|ZP_21792610.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans M230]
gi|449935721|ref|ZP_21803561.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 2ST1]
gi|449981292|ref|ZP_21817737.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 5SM3]
gi|449983682|ref|ZP_21818553.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NFSM2]
gi|449996102|ref|ZP_21823350.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans A9]
gi|450011201|ref|ZP_21829050.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans A19]
gi|450022880|ref|ZP_21830213.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans U138]
gi|450082694|ref|ZP_21852482.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans N66]
gi|450097386|ref|ZP_21857458.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SF1]
gi|450115472|ref|ZP_21863960.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans ST1]
gi|450155866|ref|ZP_21878498.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 21]
gi|450171815|ref|ZP_21884207.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SM4]
gi|30173426|sp|Q8DRS4.1|MNMA_STRMU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|24378503|gb|AAN59734.1|AE015035_3 putative tRNA [Streptococcus mutans UA159]
gi|392604235|gb|AFM82399.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans GS-5]
gi|449158136|gb|EMB61558.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 8ID3]
gi|449166214|gb|EMB69164.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 2ST1]
gi|449175915|gb|EMB78289.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 5SM3]
gi|449180938|gb|EMB83070.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NFSM2]
gi|449183736|gb|EMB85712.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans A9]
gi|449189656|gb|EMB91299.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans A19]
gi|449194213|gb|EMB95576.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans U138]
gi|449214236|gb|EMC14531.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans N66]
gi|449222758|gb|EMC22475.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SF1]
gi|449227939|gb|EMC27330.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans ST1]
gi|449236527|gb|EMC35439.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 21]
gi|449243502|gb|EMC41924.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SM4]
gi|449256750|gb|EMC54565.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SF12]
gi|449259660|gb|EMC57183.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans M230]
gi|449260870|gb|EMC58360.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans R221]
gi|449264802|gb|EMC62137.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans U2B]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRL-TIPMEGIILEAETGD------------------FLEKHRGFWFYT----IGQ 91
+ PR+ I + ++ A+ D +L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCE-DGGEDIAV------VQLSEDDQGLAAG 186
+ +P +K + NC+ + + D D+ V V E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVDVKVNGDKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYDGDECLGGGLIDNAYQEE 367
>gi|328944127|ref|ZP_08241592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Atopobium vaginae DSM 15829]
gi|327492096|gb|EGF23870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Atopobium vaginae DSM 15829]
Length = 430
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 98/246 (39%), Gaps = 62/246 (25%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPM 65
D++A+GHYA V H + KDQTYFL ++ + L + IF + I
Sbjct: 185 DFIATGHYARVYTDRHSHVHLLRAADEHKDQTYFLWRVNPSLLEKTIFPIGSIASKEIVR 244
Query: 66 E--------------------------------------GIILEAETGDFLEKHRGFWFY 87
+ G I+E ETG+ L H G + Y
Sbjct: 245 QMCATRGLGIESKPDSDGICFIGEVGIRTFLLDTLSKRAGDIIEWETGNVLGHHDGAFLY 304
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + L L RYVV D E N V+V+ N D + LL+ E I
Sbjct: 305 TIGQRKGLNLGGGPARYVVGTDTERNRVYVTANTKCPDLWCQTMVLDDVYLLN----ESI 360
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQ----------GLAAGQFAAFYQGRRC 197
+ H+++ + + H G V+L D + +AAGQ A YQG+ C
Sbjct: 361 DE-HALY---QVRLRHT--GKLQDVHVKLIHDHKIELHFESAVPKIAAGQSAVIYQGKIC 414
Query: 198 LGSGVI 203
+G G+I
Sbjct: 415 VGGGII 420
>gi|419481185|ref|ZP_14020981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA40563]
gi|379582592|gb|EHZ47470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA40563]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFALECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|168492409|ref|ZP_02716552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CDC0288-04]
gi|183573402|gb|EDT93930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CDC0288-04]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 103/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + GE V+ +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVK--GEKAEVI-FAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|449887075|ref|ZP_21786595.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SA41]
gi|450039414|ref|ZP_21836168.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans T4]
gi|449200458|gb|EMC01485.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans T4]
gi|449253473|gb|EMC51426.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SA41]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 108/264 (40%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRL-TIPMEGIILEAETGD------------------FLEKHRGFWFYT----IGQ 91
+ PR+ I + ++ A+ D +L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCE-DGGEDIAV------VQLSEDDQGLAAG 186
+ +P +K + NC+ + + D D+ V V E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVDVKVNGDKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYDGDECLGGGLIDNAYQEE 367
>gi|373455239|ref|ZP_09547077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dialister succinatiphilus YIT 11850]
gi|371935066|gb|EHO62837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Dialister succinatiphilus YIT 11850]
Length = 352
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 97/247 (39%), Gaps = 58/247 (23%)
Query: 11 YVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL-VLYPRLT-- 62
Y A+GHYA ++++ HK KDQ+Y + HL+Q QL +IF L Y + T
Sbjct: 114 YFATGHYARILYNPERQKYEVHKGIDLGKDQSYMMYHLTQDQLAHIIFPLGRTYKKDTRR 173
Query: 63 ------IPM-------EGIILEAET-----------------------GDFLEKHRGFWF 86
+P + L +E+ G L +HRG +
Sbjct: 174 ISKEKGLPTYNKAESQDICFLTSESSYVEFLKNHAPEAFRPGNIVDKKGRVLGQHRGIPY 233
Query: 87 YTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG-LPPE 145
YTIGQ + LG+ YV + N V V N F R A L G P E
Sbjct: 234 YTIGQRKGLGIAARTPLYVTALRPDKNQVVVGDNDDLF---RTRLLADELHFTDGEAPAE 290
Query: 146 KISQLHSVFY-----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
+ + Y +C++T+E AVV+ E + + GQ FY R +G
Sbjct: 291 EFRCQAKIRYGIKVHDCTVTLER-----NGRAVVKFDEPQRAITTGQSVVFYDDDRLIGG 345
Query: 201 GVILEAW 207
G I+ A
Sbjct: 346 GTIMRAL 352
>gi|194468395|ref|ZP_03074381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri 100-23]
gi|194453248|gb|EDX42146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri 100-23]
Length = 377
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 101/257 (39%), Gaps = 69/257 (26%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-- 63
DYVA+GHYA+V + K KDQTYFLS L QL +++F L Y + I
Sbjct: 122 DYVATGHYADVKRDENGRMHLMRAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYTKPEIRK 181
Query: 64 -------------PMEGIILEAETGDFLE-----------KHRGFWFYTIGQHQELGLLY 99
GI E G F E +GQH +GL+Y
Sbjct: 182 IAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIPAQPGNMETLDGKVVGQH--MGLMY 239
Query: 100 IVYR-----------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
+V+ KD++ N+++V + Y + HL+ A L+
Sbjct: 240 YTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGY----ENSHLY-ATHLEASDVH 294
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAV-VQLSEDDQ-----------GLAAGQFAA 190
+ + + ++C+ + + D+ V V LS+DDQ + GQ
Sbjct: 295 WVDDVVSRYGRDFHCTAKFRYRQ---TDVGVTVHLSDDDQMVTVEFDDPARAITPGQAVV 351
Query: 191 FYQGRRCLGSGVILEAW 207
FY G CLGS +I A+
Sbjct: 352 FYDGEECLGSAIIDRAY 368
>gi|419766970|ref|ZP_14293142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK579]
gi|383353552|gb|EID31160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK579]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 99/255 (38%), Gaps = 47/255 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL + E + A+ D +L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
+ S +P E + + F Y S + G D A V +E + + GQ FY G
Sbjct: 293 VHFTSEMPEEFTLECTAKFRYRQSDSKVTVHVKG-DKAEVIFAEPQRAITPGQAVVFYDG 351
Query: 195 RRCLGSGVILEAWDD 209
CLG G+I A+ D
Sbjct: 352 EECLGGGLIDNAYRD 366
>gi|339448187|ref|ZP_08651743.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus fructivorans KCTC
3543]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 101/252 (40%), Gaps = 63/252 (25%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPRLT- 62
DY+A GHYA + H + KDQTYFLS LS QL R++F + + P +
Sbjct: 122 DYIAMGHYAQLKRDKDGHNHLLRSTDLNKDQTYFLSQLSADQLDRVMFPVGGMTKPDVRR 181
Query: 63 ---------------------------------IPMEGIILEAETGDFLEKHRGFWFYTI 89
+P + + G+ +H G +YTI
Sbjct: 182 IAKKANLWVADKKDSMGVCFIGPNNFNNFLSHYLPAKPGKMMTFDGEVKGQHNGLMYYTI 241
Query: 90 GQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
GQ + LG+ Y +VV KD+ NI++V + Y++ HL+ SGL
Sbjct: 242 GQRKGLGIGGDGYDNLPWFVVGKDLSKNILYVGKGYHN----EHLY--ADYLTASGLSWI 295
Query: 146 KISQLHSVFY----------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ + F+ + +T+ H ED D V E + + GQ FY G+
Sbjct: 296 DSNTRGNDFHCTAKFRYRQKDTGVTV-HVED--NDHVKVVFDEPVRSITPGQAVVFYDGQ 352
Query: 196 RCLGSGVILEAW 207
CLG+ I A+
Sbjct: 353 ECLGTATIDAAF 364
>gi|309775351|ref|ZP_07670356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 3_1_53]
gi|308916868|gb|EFP62603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Erysipelotrichaceae bacterium 3_1_53]
Length = 386
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 108/255 (42%), Gaps = 61/255 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF---- 53
M+ + FD +A+GHYA V HS + + S KDQTYFL +SQ LR +F
Sbjct: 119 MNYARKLGFDVLATGHYAQVDHSGKESRMLRGADSNKDQTYFLCQVSQDALRHSMFPIGH 178
Query: 54 ---HLV--LYPRLTI-----------------------------PMEGIILEAETGDFLE 79
H V + R+ + +G I++ ET + +
Sbjct: 179 MEKHEVREIAERMELNSVSKKKDSTGICFIGERNFKEFLKNYLPSQDGDIMDIETLETIG 238
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
+H G +YTIGQ + LG+ +VV KD++ NI++V+ S ++ S +
Sbjct: 239 RHGGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSES-----DWLYSDSC-I 292
Query: 139 LSGLP--PEKISQLHSVFYNCSLTIEHCEDGGEDI--------AVVQLSEDDQGLAAGQF 188
+SG+ E Q V C+ + + + I V+ + + AGQ
Sbjct: 293 VSGVNWFSENKPQGELV---CTAKFRYRQPDNDVILRFIDNTTVYVRYPQLVSSVTAGQE 349
Query: 189 AAFYQGRRCLGSGVI 203
A FYQ CLG GVI
Sbjct: 350 AVFYQNEECLGGGVI 364
>gi|319892675|ref|YP_004149550.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus pseudintermedius HKU10-03]
gi|386319116|ref|YP_006015279.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus pseudintermedius ED99]
gi|317162371|gb|ADV05914.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Staphylococcus pseudintermedius HKU10-03]
gi|323464287|gb|ADX76440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus pseudintermedius ED99]
Length = 370
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 104/260 (40%), Gaps = 56/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKP--------SVKDQTYFLSHLSQAQLRRLI 52
+D + DYVA+GHYA V H H+D + KDQTYFL+ L++AQL +++
Sbjct: 112 LDHALKLGADYVATGHYARVRH----HEDGSVEMLRGVDNNKDQTYFLNQLTEAQLSKVM 167
Query: 53 F-----------HLVLYPRLT-------------------------IPMEGIILEAETGD 76
F + L L +P + + G+
Sbjct: 168 FPIGDIDKQKVREIALEQDLATAKKKDSTGICFIGERNFKTFLSQYLPAQPGEMRTLNGE 227
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+H G +YTIGQ LG+ +VV K++E+NI++V + ++ A
Sbjct: 228 LKGQHGGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASD 287
Query: 136 LKLLSGL----PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ ++ P + ++ + +T+ G+D V E + + GQ F
Sbjct: 288 VSFVNATDLTEPLKCTAKFRYRQKDVGVTVTA---HGDDAVKVTFDEPVRAITPGQAVVF 344
Query: 192 YQGRRCLGSGVILEAWDDQG 211
Y G CLG I + + G
Sbjct: 345 YDGDVCLGGATIDDVYKKDG 364
>gi|339327183|ref|YP_004686876.1| tRNA-specific 2-thiouridylase MnmA [Cupriavidus necator N-1]
gi|338167340|gb|AEI78395.1| tRNA-specific 2-thiouridylase MnmA [Cupriavidus necator N-1]
Length = 361
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 99/252 (39%), Gaps = 52/252 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D S+ + +A+GHYA V ++A K KDQ+YFL L+QAQL R +F L
Sbjct: 112 LDHAMSLGAETIATGHYARVRQNAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLG 171
Query: 57 LYPRLTI------------------------------------PMEGIILEAETGDFLEK 80
P+ + P + ++A G + +
Sbjct: 172 EIPKTRVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLPTKPGPMKAPEGKVVGE 231
Query: 81 HRGFWFYTIGQHQELGLLYIV-----YRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G FYT+GQ + +GL YV KD+ NN ++V + + + A
Sbjct: 232 HIGLAFYTLGQRKGIGLGGSRDGNGDAWYVARKDMANNTLYVVQGHDHPWLLTPVLTASD 291
Query: 136 LKLLSG----LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
L ++G ++ + + T++ + D + +E + GQ A
Sbjct: 292 LSWVAGEPPAAGAPMAAKTRYRQSDAACTVQAVDG---DALTLGFAEAQWAVTPGQSAVL 348
Query: 192 YQGRRCLGSGVI 203
Y G CLG G+I
Sbjct: 349 YDGDICLGGGII 360
>gi|290581402|ref|YP_003485794.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Streptococcus mutans NN2025]
gi|450034546|ref|ZP_21834439.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans M21]
gi|450062407|ref|ZP_21844295.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NLML5]
gi|450087549|ref|ZP_21854346.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NV1996]
gi|450109433|ref|ZP_21861436.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SM6]
gi|450132465|ref|ZP_21870068.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NLML8]
gi|254998301|dbj|BAH88902.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Streptococcus mutans NN2025]
gi|449153149|gb|EMB56840.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NLML8]
gi|449196328|gb|EMB97606.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans M21]
gi|449205935|gb|EMC06661.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NLML5]
gi|449217775|gb|EMC17807.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans NV1996]
gi|449226172|gb|EMC25728.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans SM6]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 107/264 (40%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLT-IPMEGIILEAETGD------------------FLEKHRGFWFYT----IGQ 91
+ PR+ I + ++ A+ D +L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAG 186
+ +P +K + NC+ + + + D A V E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYDGDECLGGGLIDNAYQEE 367
>gi|225016206|ref|ZP_03705398.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum
DSM 5476]
gi|224951028|gb|EEG32237.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum
DSM 5476]
Length = 352
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 48/243 (19%)
Query: 5 SSMEFDYVASGHYANVVHS-SADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLY-- 58
+++ FDYVA+GHYA + + + + K + KDQ+YFL + L ++F L Y
Sbjct: 112 AALGFDYVATGHYARIEQNEQGEFQLKTAAYAQKDQSYFLYGIPYPNLGHILFPLGGYTK 171
Query: 59 PRL-------------------------------------TIPMEGIILEAETGDFLEKH 81
P++ TIP +G ++++ G L +H
Sbjct: 172 PQVRELAEKYGFSVSHKRDSQEICFVDRNGYGTFLERFTGTIPPKGNFIDSQ-GTVLGEH 230
Query: 82 RGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
+G W YT+GQ + LG+ + YV E + +N V + + ++ + A + L
Sbjct: 231 KGIWHYTVGQRKGLGMAFGKPMYVSEINPADNTVRLVDDEENYSSR---LTAERMNYLIP 287
Query: 142 LPPEKISQLHSVFYN-CSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
PP K ++ N E + + + + GQ A Y G CLG
Sbjct: 288 HPPSKPVRVQVKIRNRAEFAPALLTPLSEAKIELAFDQPQRAITKGQSAVLYDGEVCLGG 347
Query: 201 GVI 203
G+I
Sbjct: 348 GII 350
>gi|450045710|ref|ZP_21838543.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans N34]
gi|450143992|ref|ZP_21873741.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 1ID3]
gi|449151198|gb|EMB54939.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 1ID3]
gi|449199993|gb|EMC01041.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans N34]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 105/264 (39%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ PR+ E GI E +L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLATAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAG 186
+ +P +K + NC+ + + + D A V +E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFNEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYDGDECLGGGLIDNAYQEE 367
>gi|374619862|ref|ZP_09692396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium HIMB55]
gi|374303089|gb|EHQ57273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
proteobacterium HIMB55]
Length = 371
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 100/258 (38%), Gaps = 66/258 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF 53
+D ++ D +A+GHY + H DK ++ KDQ+YFL + L+ +F
Sbjct: 113 LDYAKALGADKIATGHYVK----TGTHDDKATLVKGRDAGKDQSYFLHQVEHTALQDTLF 168
Query: 54 HLVLYPRLTI---------------PMEGI--ILEAETGDFLEK---------------- 80
+ + + GI I E DFL +
Sbjct: 169 PIGELEKTEVRSIASEHNFGTATKKDSTGICFIGERRFSDFLAQYLKKNPGPIKSVDGAV 228
Query: 81 ---HRGFWFYTIGQHQELGLLYI-----VYRYVVEKDIENNIVFVSRNYYSFDKKRHLFH 132
H+G ++TIGQ Q LG+ + YVV+K++E N ++V + + H
Sbjct: 229 IGEHQGLMYHTIGQRQGLGIGGLKNASEAPWYVVDKEVETNTLWVCQGNDNPALFASTLH 288
Query: 133 AGSLKLLSGLPPEKISQLHSVFYNCSLTIEH------CEDGGEDIA-VVQLSEDDQGLAA 185
G L +SG PE V + C+ + + CE + VV + +
Sbjct: 289 TGDLFWISGAAPE-------VPFTCNAKVRYRQADQACEVSRQGNGYVVHFDNPQRAITP 341
Query: 186 GQFAAFYQGRRCLGSGVI 203
GQ YQG CLG GVI
Sbjct: 342 GQSLVLYQGEVCLGGGVI 359
>gi|440730503|ref|ZP_20910588.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas translucens
DAR61454]
gi|440378748|gb|ELQ15365.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas translucens
DAR61454]
Length = 379
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
+DA + + +A+GHYA V + + + KDQ+YFL L QAQL +F +
Sbjct: 109 LDAARELGAERIATGHYARVAFADGRWRLLRGLDRNKDQSYFLHQLGQAQLAATLFPVGE 168
Query: 58 YPR---------LTIPME--------------------GIILEAETGDF-------LEKH 81
P+ +P G L A G+ + +H
Sbjct: 169 LPKEQVRRIAREAGLPTHAKKDSTGICFIGERDFRQFLGRYLPARRGEIRDPQEQVVAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ N+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVARNVLYVDQDRDSPHLMSTQLQSEAA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G P + +Q + T+E +DG V+ + + + GQ Y
Sbjct: 289 HWIAGSAPARRFDCTAQTRYRQADEPCTVEVADDG---TLAVRFARPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
QG CLG VI
Sbjct: 346 QGDDCLGGAVI 356
>gi|418181767|ref|ZP_12818328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA43380]
gi|353850004|gb|EHE30008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA43380]
Length = 373
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 103/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + GE V+ +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVK--GEKAEVI-FAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|344344094|ref|ZP_08774959.1| tRNA-specific 2-thiouridylase mnmA [Marichromatium purpuratum 984]
gi|343804378|gb|EGV22279.1| tRNA-specific 2-thiouridylase mnmA [Marichromatium purpuratum 984]
Length = 371
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 102/250 (40%), Gaps = 61/250 (24%)
Query: 10 DYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHL---------VL 57
+ +A+GHYA V H ++ H+ + KDQTYFL L Q QL F L +
Sbjct: 128 EAIATGHYARVEHGASGHRLCLCADANKDQTYFLHLLDQHQLAHARFPLHDLGKPEVRAI 187
Query: 58 YPRLTIP------MEGI--ILEAETGDFLEK-------------------HRGFWFYTIG 90
RL + GI I E G+FL + H G +YTIG
Sbjct: 188 ARRLGLANAAKKDSTGICFIGERRFGEFLARYVDRTPGPIEDPEGRVLGEHHGLAYYTIG 247
Query: 91 QHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
Q Q LG+ I +V KD E+N + V + K L AGSL PP
Sbjct: 248 QRQGLGIGGIAGGGEAPWFVATKDPEHNRLIVVQG-----KHHPLLMAGSLH---AQPPH 299
Query: 146 KIS-QLHSVFYNCSLTIEH--------CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
I+ + + ++C + H E G + V+ +E + + GQ FYQG
Sbjct: 300 WIAGEAPATPFDCLARLRHRQPLQRCTVETLGPEGCQVRFAEAQRAVTPGQSIVFYQGET 359
Query: 197 CLGSGVILEA 206
CLG VI A
Sbjct: 360 CLGGAVIEHA 369
>gi|336437072|ref|ZP_08616781.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
1_4_56FAA]
gi|336006206|gb|EGN36242.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
1_4_56FAA]
Length = 356
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 88/237 (37%), Gaps = 44/237 (18%)
Query: 10 DYVASGHYANVV----HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-- 63
DY+A+GHYA +V + KDQTY L +L+Q QL+R + + Y + I
Sbjct: 122 DYIATGHYARIVCLENGRYTLQRSANLAKDQTYALYNLTQEQLKRTLMPVGAYSKEEIRG 181
Query: 64 ------------PMEGIILEAETGDF------------------------LEKHRGFWFY 87
P I GD+ + +H+G Y
Sbjct: 182 IAEKIGLMVASKPDSQDICFVPDGDYASYIEETAGVHMPEGNFVLTDGTVIGRHKGITHY 241
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + LGL +V+E + N V + + S H + + P+++
Sbjct: 242 TVGQRKGLGLALGYPAFVLEIRPDTNEVVIGTHAESMADSLRANHLNFMSVEELTEPKRV 301
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+ YN E GED + E + + GQ FY G LG G IL
Sbjct: 302 --FTKIRYNHKGVWATVEKVGEDEVLCTFEEPQRAVTPGQAVVFYDGDYVLGGGTIL 356
>gi|113461819|ref|YP_719888.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 129PT]
gi|123327501|sp|Q0I5Y6.1|MNMA_HAES1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|112823862|gb|ABI25951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Haemophilus somnus 129PT]
Length = 383
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 106/255 (41%), Gaps = 63/255 (24%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDK-----PSVKDQTYFLSHLSQAQLRRLIFHL-- 55
A+ + DY+A+GHY V S + + K S KDQ+YFL LS+ Q+ + +F +
Sbjct: 133 AVEDLGADYIATGHY--VRRSDVNGQTKLLRGLDSNKDQSYFLYTLSKDQVAQSLFPVGE 190
Query: 56 VLYPRLTIPME--GII-------------------------LEAETGDF-------LEKH 81
+ P + E G+I L A+ G+ + KH
Sbjct: 191 IEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKEFLARFLPAQPGEIRMVDGKVIGKH 250
Query: 82 RGFWFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +YT+GQ + LG+ L YVVEKD+ NN++ V++ + A L
Sbjct: 251 DGLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGNDNSALLSQGLIATQL 310
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEH------CE--DGGEDIAVVQLSEDDQGLAAGQF 188
+ LP + C++ + CE +D V+ E + GQ
Sbjct: 311 YWVDRLPIRQ-------NLRCTVKTRYRQQDIACEVIPLNDDCVEVRFDEPQIAVTPGQS 363
Query: 189 AAFYQGRRCLGSGVI 203
A FYQG CLG GVI
Sbjct: 364 AVFYQGEECLGGGVI 378
>gi|358467092|ref|ZP_09176861.1| hypothetical protein HMPREF9093_01337 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357068403|gb|EHI78412.1| hypothetical protein HMPREF9093_01337 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 362
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 50/250 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLY 58
+D I S ++A+GHY + + D S KDQ YFLS + + +L +++F + +
Sbjct: 119 LDFILSKGASFMATGHYTRLKNGLLTVGD-DSNKDQVYFLSQIEKNRLSKILFPVGDLAK 177
Query: 59 PRLTIPMEGIILEA-------------------------------------ETGDFLEKH 81
P+L E I + + G L KH
Sbjct: 178 PKLRELAEQIGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAEKIGNIVDKDGKILGKH 237
Query: 82 RGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDK-----KRHLFHAGSL 136
+GF FYTIGQ + LG+ YV+ D NN + V RN F + + +LF SL
Sbjct: 238 KGFSFYTIGQRKGLGISSEEPLYVLSFDRSNNNIIVGRNEDLFKEELIATRLNLFSVSSL 297
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+ L L ++ +F+ C L + G++ V + + + GQ FY
Sbjct: 298 ESLDNLECFAKTRSRDIFHKCVLKKD-----GDNFQVKFIDNKVRAITPGQGIVFYNSDG 352
Query: 197 CLGSGVILEA 206
+ +G +E+
Sbjct: 353 NVIAGGFIES 362
>gi|227872028|ref|ZP_03990409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Oribacterium sinus F0268]
gi|227842120|gb|EEJ52369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Oribacterium sinus F0268]
Length = 362
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 92/246 (37%), Gaps = 57/246 (23%)
Query: 11 YVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP-----R 60
Y+ +GHYA + + K K KDQ+Y L LSQ QL +F L Y R
Sbjct: 122 YIVTGHYARIEKDESSGRYLLKKAKDEKKDQSYVLYFLSQEQLAHTLFPLGEYSSKEEVR 181
Query: 61 LTIPMEGII-------------LEAETGDFLEK---------------------HRGFWF 86
G I + GDFLEK HRG
Sbjct: 182 EIADKYGFINSDKPDSQDICFVTNGDYGDFLEKFRGKPYPSGDFVDENGKKLGEHRGTVR 241
Query: 87 YTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFH---AGSLKLLSGLP 143
YTIGQ + LGL YV K+IE N V +S DK+ F A +S P
Sbjct: 242 YTIGQRKGLGLSLKKPMYVSGKNIEKNQVILS------DKEGIYFEGLLANDFNWISLPP 295
Query: 144 PEKISQLHSVFYNCSL--TIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
E ++ YN I + G+ ++ E ++ + GQ Y G LG G
Sbjct: 296 TEDMAVEAKTRYNGKAVPAIVSVRENGD--VFLRFPEKERAVTKGQAVVLYDGDLVLGGG 353
Query: 202 VILEAW 207
I+E +
Sbjct: 354 TIVEGY 359
>gi|345857921|ref|ZP_08810339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Desulfosporosinus sp. OT]
gi|344329008|gb|EGW40368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Desulfosporosinus sp. OT]
Length = 369
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 92/241 (38%), Gaps = 48/241 (19%)
Query: 10 DYVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---- 60
DY+A+GHYA V+ K KDQTY L L+Q QL +F L YP+
Sbjct: 124 DYIATGHYAQVLRDPDSDRFLLSKGADERKDQTYALYMLTQEQLAHTLFPLADYPKEQIR 183
Query: 61 -------------------LTIPMEGIILEAE---------------TGDFLEKHRGFWF 86
IP + + G+ L KHRG
Sbjct: 184 KMARERGLGVGDKPDSQEICFIPNDDYATFVQKRSEESIKPGNFVDLAGNSLGKHRGIIH 243
Query: 87 YTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK 146
YT+GQ + LG+ + +VV + +N V + + + + + P K
Sbjct: 244 YTVGQRKGLGVTFGKPMFVVGLNPVSNEVVLGEDPDVYTDTLWAIDLNWISISELKEPIK 303
Query: 147 ISQLHSVFYNCS---LTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
I + YN S TI E G +D +V+ E + + GQ FYQG +G G I
Sbjct: 304 IEA--KIRYNSSGAHATIYPGEIGVDDSVMVRFDEPQRAVTPGQAVVFYQGNIVVGGGKI 361
Query: 204 L 204
+
Sbjct: 362 I 362
>gi|322391188|ref|ZP_08064660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus peroris ATCC 700780]
gi|321145941|gb|EFX41330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus peroris ATCC 700780]
Length = 453
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 193 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 252
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E G++L G G+ +
Sbjct: 253 HLEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTVDGRDMGE 312
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 313 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHEALMSTSLEASQ 372
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ D E V +E + + GQ F
Sbjct: 373 VHFTRDMPEEFTLECIAKFRYRQPDSKVTVHVKGDKAE----VIFAEPQRAITPGQAVVF 428
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 429 YDGEECLGGGLIDNAYRD 446
>gi|319651666|ref|ZP_08005793.1| TrmU protein [Bacillus sp. 2_A_57_CT2]
gi|317396733|gb|EFV77444.1| TrmU protein [Bacillus sp. 2_A_57_CT2]
Length = 371
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 102/250 (40%), Gaps = 51/250 (20%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DY+A+GHYA V ++K + KDQTYFL+ L+Q QL +++F + +
Sbjct: 119 SLGADYLATGHYARVEFRDGEYKMLRGLDDNKDQTYFLNQLTQDQLEKVMFPIGDIEKSK 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + +E G + KH G +
Sbjct: 179 VRELAKDAGLATAAKKDSTGICFIGERNFKEFLGNYLPAQPGNMETMDGKIVGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL--- 142
YTIGQ LG+ + + KD++ N+++V + +++ + ++ S+ ++
Sbjct: 239 YTIGQRHGLGIGGAGEPWFAIGKDLKRNVLYVGQGFHN-----EMLYSDSIIAVNASWVT 293
Query: 143 ---PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P++ Y + + + G+ V E + + GQ FY G CLG
Sbjct: 294 HSEQPQEFECTAKFRYRQADSRVKVQILGDGKVQVIFDEPIRAVTPGQAVVFYNGDECLG 353
Query: 200 SGVILEAWDD 209
G I + + D
Sbjct: 354 GGTIDKIFKD 363
>gi|329116668|ref|ZP_08245385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parauberis NCFD 2020]
gi|326907073|gb|EGE53987.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parauberis NCFD 2020]
gi|456369903|gb|EMF48803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parauberis KRS-02109]
gi|457093960|gb|EMG24515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus parauberis KRS-02083]
Length = 372
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 102/256 (39%), Gaps = 53/256 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA + + + KDQTYFLS LSQ QL++ +F L
Sbjct: 112 LDYAMTLGADYVATGHYAQIERDQYGTVHMLRGVDNGKDQTYFLSQLSQKQLQKTLFPLG 171
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E +L +G G+ +
Sbjct: 172 HLQKPEVRAIAEKAGLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMLTVDGRDMGE 231
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A +
Sbjct: 232 HAGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDAST 291
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V E+ + + GQ F
Sbjct: 292 IHFTKEMPEEFTMECTAKFRYRQPDSKVTV-HVKG---DKAEVIFDEEQRAITPGQAVVF 347
Query: 192 YQGRRCLGSGVILEAW 207
Y G+ CLG G+I A+
Sbjct: 348 YDGQECLGGGIIDMAF 363
>gi|407959943|dbj|BAM53183.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BEST7613]
Length = 374
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 42/246 (17%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL------- 55
S+ DY+A+GHYA V S + + KDQTYFL+ L++ L +++F +
Sbjct: 122 SLGADYLATGHYARVDRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIGELQKSR 181
Query: 56 --------VLYPRLTIPMEGII--------------LEAETGDFLE-------KHRGFWF 86
L GI L A+ GD + +H G +
Sbjct: 182 VREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGDMMTMDGEVKGRHDGLMY 241
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG--LP 143
YTIGQ LG+ + V KD+E NI++V + +++ A ++ + +
Sbjct: 242 YTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNISWVRSDIMK 301
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
E+IS Y GE A V E + + GQ FY G CLG G I
Sbjct: 302 GEEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFYDGEECLGGGTI 361
Query: 204 LEAWDD 209
+ + D
Sbjct: 362 DDVYKD 367
>gi|418975510|ref|ZP_13523414.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus oralis SK1074]
gi|383347493|gb|EID25471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus oralis SK1074]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VNFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|452205010|ref|YP_007485139.1| tRNA-specific 2-thiouridylase [Dehalococcoides mccartyi BTF08]
gi|452112066|gb|AGG07797.1| tRNA-specific 2-thiouridylase [Dehalococcoides mccartyi BTF08]
Length = 357
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 101/253 (39%), Gaps = 54/253 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHS--------SADHKDKPSVKDQTYFLSHLSQAQLRRLI 52
++ I + DY+A+GHYA +V AD K KDQ+YFL L L RL+
Sbjct: 112 LNKIQDFKADYLATGHYARIVSDENGTHLLRGADEK-----KDQSYFLYTLPPESLSRLM 166
Query: 53 FHL---------VLYPRLTIPME---------------------------GIILEAETGD 76
F L L + +P+ G IL+ TG
Sbjct: 167 FPLGQKYKKDIVRLATNMKLPVSQKESQDVCFIPDGDYKSFLATRMGFTPGKILDT-TGK 225
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
L +H+G YT+GQ Q LGL +V + + + N + V+ + + + + + +
Sbjct: 226 ILGEHQGLPLYTVGQRQGLGLASNEKLFVSDMNADANTITVAGHDQLYTSR--ILLSNFI 283
Query: 137 KLLSGLPPEKISQLHSVFYNCSLT-IEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
SG+PP+ + V Y + ++ G D +++L+ GQ A Y
Sbjct: 284 WRESGIPPDTSGMIVKVRYKAAPAEVKKISQSG-DFYILELASPVWAATPGQAAVIYLDD 342
Query: 196 RCLGSGVILEAWD 208
LG G+I D
Sbjct: 343 MVLGGGIIESGGD 355
>gi|451946025|ref|YP_007466620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Desulfocapsa sulfexigens DSM 10523]
gi|451905373|gb|AGF76967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Desulfocapsa sulfexigens DSM 10523]
Length = 335
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 96/245 (39%), Gaps = 45/245 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
MDA+ + +A+GHYA++V + + ++KDQTYFL+ L Q QL R+ F L
Sbjct: 93 MDAMLEHGMEEIATGHYASIVEEDGCFFLQQGEDTIKDQTYFLARLGQKQLARVKFPLGA 152
Query: 58 YPRLTI----------------PMEGIILEAET----------------------GDFLE 79
+ + + L+ E+ G L
Sbjct: 153 MTKSAVYDLVEEHGFTDFRGRESQDVCFLQNESVGHFLTTRSPESARDGDIVHINGHVLG 212
Query: 80 KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
+H G YT+GQ + LG+ YV++ D N V V N D + +
Sbjct: 213 RHNGIINYTVGQRRGLGIAAPSPLYVLKIDASANRVIVGDND---DLYQDSIEIQDVSWN 269
Query: 140 SGLPPEKISQ-LHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
G PP+ L + Y + ED + +E + + GQFA Y+G R +
Sbjct: 270 CGKPPKSDHDYLVRIRYGHEGQPAKIKQISEDHYHISFTERQRAVTPGQFAVIYEGDRLI 329
Query: 199 GSGVI 203
GSG I
Sbjct: 330 GSGEI 334
>gi|449948397|ref|ZP_21807907.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 11SSST2]
gi|449167812|gb|EMB70672.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 11SSST2]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 108/264 (40%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DY+A+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYMATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLT-IPMEGIILEAETGD------------------FLEKHRGFWFYT----IGQ 91
+ PR+ I + ++ A+ D +L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y + A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSNSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAG 186
+ +P +K + NC+ + + + D A V E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYNGDECLGGGLIDNAYQEE 367
>gi|392595460|gb|EIW84783.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Coniophora
puteana RWD-64-598 SS2]
Length = 372
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 102/253 (40%), Gaps = 62/253 (24%)
Query: 11 YVASGHYA-NVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
++A+GH+A H ++D P++ KDQTY+LS +S ++R +F L + ++
Sbjct: 118 WLATGHWAAKGRHIASDGSLLPTLRRPRDLSKDQTYYLSSISADSIQRALFPLADFTKVE 177
Query: 63 I--------------------------------------PMEGIILEAETGDFLEKHRGF 84
I P G I+E + L H+G
Sbjct: 178 IRELAEKWGLPTAKREESMGLCFVGEKRRFNDFLAQYLQPQPGSIVEHPSKRVLGTHQGL 237
Query: 85 WFYTIGQHQEL-GLLYIVYRYVVEKDIEN---NIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
W YTIGQ ++ GL V +V KD+ N+V+ + N + K ++ + +
Sbjct: 238 WNYTIGQGAKIAGLKDRV--FVASKDVSTNTVNVVYGTENPALYAKS--VWTDDFSWIWA 293
Query: 141 GLPPEKIS-------QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
G PPE + + V + T ED + ++ E + A GQ A Y
Sbjct: 294 GQPPEALKHGMKVRVKTRHVMQDVGCTAYLDEDCPGGLRII-FDEPQKAQAPGQIAVLYD 352
Query: 194 GRRCLGSGVILEA 206
G CLG G I +A
Sbjct: 353 GTWCLGCGRIRDA 365
>gi|417940101|ref|ZP_12583389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus oralis SK313]
gi|343388982|gb|EGV01567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus oralis SK313]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQKQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRNMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|421297597|ref|ZP_15748294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA60080]
gi|395905048|gb|EJH15956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA60080]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAITLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLGKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|221310688|ref|ZP_03592535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus subtilis subsp. subtilis str. 168]
gi|221315011|ref|ZP_03596816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221319932|ref|ZP_03601226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus subtilis subsp. subtilis str. JH642]
gi|221324213|ref|ZP_03605507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus subtilis subsp. subtilis str. SMY]
gi|255767628|ref|NP_390627.3| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp.
subtilis str. 168]
gi|386759303|ref|YP_006232519.1| protein MnmA [Bacillus sp. JS]
gi|402776904|ref|YP_006630848.1| tRNA 2-thiouridylase [Bacillus subtilis QB928]
gi|452915163|ref|ZP_21963789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus subtilis MB73/2]
gi|254763446|sp|O35020.4|MNMA_BACSU RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|225185256|emb|CAB14691.3| tRNA 2-thiouridylase [Bacillus subtilis subsp. subtilis str. 168]
gi|384932585|gb|AFI29263.1| MnmA [Bacillus sp. JS]
gi|402482084|gb|AFQ58593.1| TRNA 2-thiouridylase [Bacillus subtilis QB928]
gi|407965586|dbj|BAM58825.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BEST7003]
gi|452115511|gb|EME05907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus subtilis MB73/2]
Length = 371
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 42/246 (17%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL------- 55
S+ DY+A+GHYA V S + + KDQTYFL+ L++ L +++F +
Sbjct: 119 SLGADYLATGHYARVDRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIGELQKSR 178
Query: 56 --------VLYPRLTIPMEGII--------------LEAETGDFLE-------KHRGFWF 86
L GI L A+ GD + +H G +
Sbjct: 179 VREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGDMMTMDGEVKGRHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG--LP 143
YTIGQ LG+ + V KD+E NI++V + +++ A ++ + +
Sbjct: 239 YTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNISWVRSDIMK 298
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
E+IS Y GE A V E + + GQ FY G CLG G I
Sbjct: 299 GEEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFYDGEECLGGGTI 358
Query: 204 LEAWDD 209
+ + D
Sbjct: 359 DDVYKD 364
>gi|357635872|ref|ZP_09133747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus macacae NCTC 11558]
gi|357584326|gb|EHJ51529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus macacae NCTC 11558]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 108/262 (41%), Gaps = 49/262 (18%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DYVA+GHYA V+ + H + + KDQTYFLS LSQ QL+R++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVMRDQNGVVHMLRGVDTNKDQTYFLSQLSQEQLKRVMFPLG 172
Query: 57 LYPRLTI----PMEGII-------------------------LEAETGDFLE-------K 80
+ + G++ L A+ G L
Sbjct: 173 HLEKSVVREIAEKAGLVTAKKKDSTGICFIGEKNFKNFLSQYLPAQPGRMLTIDGKDMGP 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y A
Sbjct: 233 HSGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHKSLMSTRLTASM 292
Query: 136 LKLLSGLPPEKISQLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
+ +P + + F Y + G + VV +E + + GQ FY G
Sbjct: 293 IHFTRDVPKSFTLECTAKFRYRQPDSKVTVYVNGNNAEVV-FAEPQRAITPGQAVVFYDG 351
Query: 195 RRCLGSGVILEAWDDQGFPVCK 216
CLG G+I A+ QG VC+
Sbjct: 352 DECLGGGLIDNAY--QGKKVCQ 371
>gi|449875480|ref|ZP_21782236.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans S1B]
gi|449253884|gb|EMC51818.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans S1B]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 104/264 (39%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ PR+ E GI E +L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLATAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAG 186
+ +P +K + NC+ + + + D A V E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYNGDECLGGGLIDNAYQEE 367
>gi|443632071|ref|ZP_21116251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443348186|gb|ELS62243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 371
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 42/246 (17%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLV------ 56
S+ DY+A+GHYA V S + + KDQTYFL+ L++ L +++F +
Sbjct: 119 SLGADYLATGHYARVDRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIGELQKSR 178
Query: 57 ---------LYPRLTIPMEGII--------------LEAETGDFLE-------KHRGFWF 86
L GI L A+ GD + +H G +
Sbjct: 179 VREIAKEADLATATKKDSTGICFIGERNFKTFLSQYLPAQPGDMMTMDGEVKGRHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG--LP 143
YTIGQ LG+ + V KD+E NI++V + +++ A ++ + +
Sbjct: 239 YTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNISWVRSDIMK 298
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
E+IS Y GE A V E + + GQ FY G CLG G I
Sbjct: 299 GEEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFYDGEECLGGGTI 358
Query: 204 LEAWDD 209
+ + D
Sbjct: 359 DDVYKD 364
>gi|148543839|ref|YP_001271209.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri DSM
20016]
gi|184153240|ref|YP_001841581.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri JCM 1112]
gi|227364743|ref|ZP_03848792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri MM2-3]
gi|325682630|ref|ZP_08162147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri MM4-1A]
gi|423332880|ref|ZP_17310662.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
[Lactobacillus reuteri ATCC 53608]
gi|166991123|sp|A5VJ48.1|MNMA_LACRD RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|229486414|sp|B2G6L9.1|MNMA_LACRJ RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|148530873|gb|ABQ82872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri DSM 20016]
gi|183224584|dbj|BAG25101.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
[Lactobacillus reuteri JCM 1112]
gi|227070202|gb|EEI08576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri MM2-3]
gi|324978469|gb|EGC15419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus reuteri MM4-1A]
gi|337727998|emb|CCC03087.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
[Lactobacillus reuteri ATCC 53608]
Length = 377
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 101/257 (39%), Gaps = 69/257 (26%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-- 63
DYVA+GHYA+V + K KDQTYFLS L QL +++F L Y + I
Sbjct: 122 DYVATGHYADVKRDENGRMHLMRAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYTKPEIRK 181
Query: 64 -------------PMEGIILEAETGDFLE-----------KHRGFWFYTIGQHQELGLLY 99
GI E G F E +GQH +GL+Y
Sbjct: 182 IAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIPAQPGNMETLDGKVVGQH--MGLMY 239
Query: 100 IVYR-----------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
+V+ KD++ N+++V + Y + HL+ A L+
Sbjct: 240 YTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGY----ENSHLY-ATHLEASDIH 294
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAV-VQLSEDDQ-----------GLAAGQFAA 190
+ + + ++C+ + + D+ V V LS+DDQ + GQ
Sbjct: 295 WVDDVVSRYGRDFHCTAKFRYRQ---TDVGVTVHLSDDDQMVTVEFDDPARAITPGQAVV 351
Query: 191 FYQGRRCLGSGVILEAW 207
FY G CLGS +I A+
Sbjct: 352 FYDGEECLGSAIIDRAY 368
>gi|319764949|ref|YP_004128886.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Alicycliphilus denitrificans BC]
gi|317119510|gb|ADV01999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Alicycliphilus denitrificans BC]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 98/260 (37%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
+D + + +A+GHYA V H+ A K KDQ+YFL L+Q QL R +F +
Sbjct: 113 LDHAMRLGAEKIATGHYARVRHNPATGLFELLKGLDPAKDQSYFLHRLNQEQLARTLFPV 172
Query: 56 ---------VLYPRLTIPME----------------------------GIILEAETGDFL 78
+ + +P G IL+ + G L
Sbjct: 173 GELRKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISHEPGPILD-DRGRRL 231
Query: 79 EKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKR---------- 128
+H G FYT+GQ Q LG+ + + E+ FV+R + + R
Sbjct: 232 GRHVGLSFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWFVARKELATNTLRVVQGHDHPWL 291
Query: 129 --HLFHAGSLKLLSGLPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGL 183
H A ++G PP + Y + + T+ + G + Q SE +
Sbjct: 292 LSHRLAAQDASWVAGRPPAPGACAAKTRYRQQDAACTVLAAQGGAFSL---QFSEAQWAV 348
Query: 184 AAGQFAAFYQGRRCLGSGVI 203
GQ A Y G CLG GVI
Sbjct: 349 TPGQSAVLYDGEVCLGGGVI 368
>gi|222151508|ref|YP_002560664.1| tRNA-specific 2-thiouridylase MnmA [Macrococcus caseolyticus
JCSC5402]
gi|222120633|dbj|BAH17968.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Macrococcus caseolyticus JCSC5402]
Length = 371
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 47/246 (19%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL--VLYPRLT-- 62
DYVA+GHYA + S + V KDQTYFL+ L+Q QL R++F L + P +
Sbjct: 121 DYVATGHYAQIRRSEDGVEMLRGVDNNKDQTYFLNQLTQEQLSRVMFPLGHLQKPEVREI 180
Query: 63 --------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIG 90
+P + ++ G + H G +YTIG
Sbjct: 181 ALKHDLATAKKKDSTGICFIGERNFKEFLSGYLPAQNGEMQTLDGKPMGTHSGLMYYTIG 240
Query: 91 QHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL----PPE 145
Q LG+ +VV K++++N+++V + + A + ++ + P E
Sbjct: 241 QRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFDHDALYSDYLIASDVSFVNPVDLTTPLE 300
Query: 146 KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
++ + +T+E +D + V +E + + GQ FY G CLG I +
Sbjct: 301 CTAKFRYRQRDTKVTVEKIDD---NTIKVTYAEPVRAITPGQAVVFYNGEVCLGGATIDD 357
Query: 206 AWDDQG 211
+ G
Sbjct: 358 VYKTSG 363
>gi|73662449|ref|YP_301230.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|123642746|sp|Q49Y59.1|MNMA_STAS1 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|72494964|dbj|BAE18285.1| putative tRNA methyltransferase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 370
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 42/244 (17%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
DYVA+GHYA V H + + KDQTYFL+ LSQ+QL R++F
Sbjct: 121 DYVATGHYARVRRHEDGHVEMLRGVDNNKDQTYFLNQLSQSQLSRVMFPIGDIEKKEVRR 180
Query: 54 ------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+ + +P + + G+ + H G +YTI
Sbjct: 181 IAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGEMRTLKGEKIGTHAGLMYYTI 240
Query: 90 GQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
GQ LG+ +VV K++++NI++V + ++ A + ++ + E
Sbjct: 241 GQRHGLGIGGDGDPWFVVGKNLDDNILYVEQGFHHDALYSDYLIASDISFVNDVDLENGF 300
Query: 149 QLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207
+ + F Y T ++ E+ V +E + + GQ Y G CLG I + +
Sbjct: 301 ECTAKFRYRQKDTKVFVKNENENAIRVIFNEPVRAITPGQSVVLYDGDVCLGGATIDDVY 360
Query: 208 DDQG 211
+ G
Sbjct: 361 KESG 364
>gi|319787135|ref|YP_004146610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoxanthomonas suwonensis 11-1]
gi|317465647|gb|ADV27379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Pseudoxanthomonas suwonensis 11-1]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 97/255 (38%), Gaps = 59/255 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+DA + + +A+GHYA V+H + KDQTYFL L QAQL +F +
Sbjct: 110 LDAARELGAERIATGHYAQVLHEGGRWRLLRGADRDKDQTYFLHQLGQAQLAATLFPIGH 169
Query: 58 YPRLTI---------PME--------------------GIILEAETGDF-------LEKH 81
P+ + P G L A+ G+ + H
Sbjct: 170 LPKAEVRRLAREAGLPTHAKKDSTGICFIGERDFREFLGRYLAAQPGEIRDPQGVRIGTH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ NI++V ++ S ++
Sbjct: 230 PGVFYFTLGQREGLAIGGVRGRPAAPWYVVGKDVAGNILYVDQDRDSPWLMAGTVETEAM 289
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTI------EHCEDGGEDIAV--VQLSEDDQGLAAGQF 188
+ G PP + ++C+ + E C D V+ + GQ
Sbjct: 290 HWVEGAPP-------ATEFDCTAQVRYRQQDEPCRVRVRDDGTLSVRFVRPQRAATPGQS 342
Query: 189 AAFYQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 343 LVLYDGPVCLGGAVI 357
>gi|407941385|ref|YP_006857026.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax sp. KKS102]
gi|407899179|gb|AFU48388.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax sp. KKS102]
Length = 389
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 100/260 (38%), Gaps = 62/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
+D + + +A+GHYA V H+ A K KDQ+YFL L+QAQL + +F +
Sbjct: 113 LDHAMRLGAEKIATGHYARVRHNPATGLHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPV 172
Query: 56 ---------VLYPRLTIP----------------------------MEGIILEAETGDFL 78
+ + +P G+IL+ + G L
Sbjct: 173 GELHKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISHAPGLILD-DRGRKL 231
Query: 79 EKHRGFWFYTIGQHQELGLLYIVYR------------YVVEKDIENNIVFVSRNYYSFDK 126
+H G FYT+GQ Q LG+ + + +V KD+E N + V + +
Sbjct: 232 GQHVGLSFYTLGQRQGLGIGGVKEKGAQRGGGAHEPWFVARKDLEKNTLRVVQGHDHPWL 291
Query: 127 KRHLFHAGSLKLLSGLPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGL 183
H A + +G P + Y + + +E DG +Q + +
Sbjct: 292 LSHRLVAQDVSWCAGQAPAPGTYAAKTRYRQQDAACALEAVPDG----FALQFPDAQWAV 347
Query: 184 AAGQFAAFYQGRRCLGSGVI 203
GQ A Y G CLG GVI
Sbjct: 348 TPGQSAVLYDGDVCLGGGVI 367
>gi|450076043|ref|ZP_21849628.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans N3209]
gi|449213247|gb|EMC13586.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans N3209]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 105/264 (39%), Gaps = 63/264 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYT----IGQ 91
+ PR+ E GI E +L +G +G+
Sbjct: 173 HLQKPRVREIAEKAGLATAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGE 232
Query: 92 HQELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHA 133
H GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HN--GLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTA 290
Query: 134 GSLKLLSGLPPEKISQLHSVFYNCSLTIEHCE-DGGEDIAV------VQLSEDDQGLAAG 186
+ +P +K + NC+ + + D D+ V V E + + G
Sbjct: 291 SQVHFTQNMP-DKFT------LNCTAKFRYRQPDSKVDVKVNGDKAEVIFDEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQ 210
Q FY G CLG G+I A+ ++
Sbjct: 344 QAVVFYDGDECLGGGLIDNAYQEE 367
>gi|414156493|ref|ZP_11412795.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. F0442]
gi|410870140|gb|EKS18099.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. F0442]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GII--------------LEAETGDFLE-------K 80
+ P + E GI L A+ G + +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|315221594|ref|ZP_07863514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus anginosus F0211]
gi|421490145|ref|ZP_15937519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus anginosus SK1138]
gi|315189428|gb|EFU23123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus anginosus F0211]
gi|400373550|gb|EJP26478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus anginosus SK1138]
Length = 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 102/263 (38%), Gaps = 63/263 (23%)
Query: 1 MDAISSMEFDYVASGHYA-------NVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIF 53
+D ++ DYVA+GHYA +VH + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYARAKRDEDGIVHML---RGVDNGKDQTYFLSQLSQEQLQKTMF 169
Query: 54 HLVLYPRLTIPM---------------EGIILEAET------GDFLEKHRGFWFYTIGQH 92
L + + GI E G++L G G+
Sbjct: 170 PLGHLEKSEVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLGNYLPAQPGRMMTVDGRD 229
Query: 93 --QELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFH 132
+ GL+Y +VV KD+ NI++V + +Y +
Sbjct: 230 MGEHAGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLD 289
Query: 133 AGSLKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAG 186
A + +P E + + F ++T++ D A+V +E + + G
Sbjct: 290 ASQVHFTREIPAEFTMECTAKFRYRQPDSKVTVTVKG------DKAIVNFAEPQRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAWDD 209
Q FY CLG G+I A+ D
Sbjct: 344 QAVVFYDEEECLGGGLIDNAYKD 366
>gi|384176329|ref|YP_005557714.1| tRNA methyl transferase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349595553|gb|AEP91740.1| tRNA methyl transferase [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 371
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 98/246 (39%), Gaps = 42/246 (17%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL------- 55
S+ DY+A+GHYA V S + + KDQTYFL+ L++ L +++F +
Sbjct: 119 SLGADYLATGHYARVDRSGGKVRMLRGLDENKDQTYFLNQLTEDTLSKVMFPIGELQKSR 178
Query: 56 --------VLYPRLTIPMEGII--------------LEAETGDFLE-------KHRGFWF 86
L GI L A+ GD + +H G +
Sbjct: 179 VREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGDMMTMDGEVKGRHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG--LP 143
YTIGQ LG+ + V KD+E NI++V + +++ A ++ + L
Sbjct: 239 YTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNISWVRSDILK 298
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
E+IS Y GE A V E + + GQ FY G CLG G I
Sbjct: 299 GEEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFYDGEECLGGGTI 358
Query: 204 LEAWDD 209
+ + D
Sbjct: 359 DDVYKD 364
>gi|87306814|ref|ZP_01088960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Blastopirellula marina DSM 3645]
gi|87290187|gb|EAQ82075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Blastopirellula marina DSM 3645]
Length = 363
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 92/249 (36%), Gaps = 54/249 (21%)
Query: 2 DAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
D S+ +YVA+GHYA ++ D + S KDQTY L + + LRR++
Sbjct: 121 DYADSVGAEYVATGHYARLITDQTDALPRLVRGVDSGKDQTYVLFGIGREYLRRMLLPVG 180
Query: 54 ------------------------------------HLVLYPRLTIPMEGIILEAETGDF 77
+ R + G I+ G+
Sbjct: 181 QFEKSRIRELAGQIGMRVADKKDSQEICFVTSGKHDEFIKSRRADLQTAGEIVTT-AGEV 239
Query: 78 LEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLK 137
+ H G YTIGQ + LG+ R+VV D E N V + + R A
Sbjct: 240 VGTHDGIEKYTIGQRKGLGVALGEPRFVVRIDAETNQVVIGEKE---ELGRTELTARDCN 296
Query: 138 LLSGLPPEKISQLHSVFYN---CSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
L LP + + YN T+EH DG IAV E +G+A GQ Y G
Sbjct: 297 WLVDLPAGPLRCRAQIRYNSDDAPATVEHLPDG--RIAVT-FDEPRRGVAPGQAVVCYDG 353
Query: 195 RRCLGSGVI 203
+ LG G I
Sbjct: 354 DQVLGGGWI 362
>gi|417810257|ref|ZP_12456936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius GJ-24]
gi|335349053|gb|EGM50553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus salivarius GJ-24]
Length = 375
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 106/259 (40%), Gaps = 57/259 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D S++ DY+A GHYA + + KDQTYFLS LSQ QL++++F
Sbjct: 113 LDYAMSIDADYIAMGHYAQLRRDEDGRVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIG 172
Query: 54 HLVLYPRLTIPME--------------------------GIILEAETGDFLE-------K 80
HL I E G L A+ G+ +
Sbjct: 173 HLQKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLPAQPGEMVTLDGEVKGN 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G YTIGQ + LG+ +V+ K+++ N + V + Y++ HL+ A SL
Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKNLKTNTLLVGQGYHN----EHLY-ANSL 287
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGG------EDIAVVQLSEDD--QGLAAGQF 188
+ IS F+ + +D G ED V++ D+ + + GQ
Sbjct: 288 DASKLSFVDDISDRGDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQE 347
Query: 189 AAFYQGRRCLGSGVILEAW 207
FY G CLGSG I A+
Sbjct: 348 VVFYDGEECLGSGTIDHAY 366
>gi|433676395|ref|ZP_20508510.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430818489|emb|CCP38803.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 379
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
+DA + + +A+GHYA V + + + KDQ+YFL L QAQL +F +
Sbjct: 109 LDAARELGAERIATGHYARVTFADGRWRLLRGLDRNKDQSYFLHQLGQAQLAATLFPVGE 168
Query: 58 YPR---------LTIPME--------------------GIILEAETGDF-------LEKH 81
P+ +P G L A G+ + +H
Sbjct: 169 LPKEQVRRIAREAGLPTHAKKDSTGICFIGERDFRQFLGRYLPARRGEIRDPQEQVVAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ N+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVARNVLYVDQDRDSPHLMSTQLQSEAA 288
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G P + +Q + T+E +DG V+ + + + GQ Y
Sbjct: 289 HWIAGSAPARRFDCTAQTRYRQADEPCTVEVADDG---TLAVRFAHPQRAVTPGQSLVLY 345
Query: 193 QGRRCLGSGVI 203
QG CLG VI
Sbjct: 346 QGDDCLGGAVI 356
>gi|392957292|ref|ZP_10322816.1| tRNA-specific 2-thiouridylase MnmA [Bacillus macauensis ZFHKF-1]
gi|391876699|gb|EIT85295.1| tRNA-specific 2-thiouridylase MnmA [Bacillus macauensis ZFHKF-1]
Length = 375
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 105/252 (41%), Gaps = 48/252 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D S+ DYVA+GHYA + + + KDQTYFL+ LSQ Q+ +++F +
Sbjct: 118 LDHAMSLGADYVATGHYARIGEDEEGLVTMLRGVDANKDQTYFLNQLSQDQISKVLFPIG 177
Query: 56 -VLYPRL-TIPMEGIILEAE----TG-------DFLE----------------------K 80
+ P + I E + A+ TG DF E K
Sbjct: 178 ELNKPEIRKIAEEAGLATAKKKDSTGICFIGERDFKEFLSNYLPAKPGNMTTLDGAVKGK 237
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
H G +YTIGQ LG+ +VV KD+ +N ++V + + A L
Sbjct: 238 HDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLASNTLYVEQGFDHDSLYSDRLIAEEPSWL 297
Query: 140 SGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
S P E + + F + +T+ EDG ++VV E + + GQ FY G
Sbjct: 298 SSKPLEGSKKCTAKFRYRQPDKGVTVTTMEDG--RLSVV-FDEPQRAITPGQAVVFYDGD 354
Query: 196 RCLGSGVILEAW 207
CLG I E +
Sbjct: 355 VCLGGATIDEVF 366
>gi|293604355|ref|ZP_06686762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Achromobacter piechaudii ATCC 43553]
gi|292817232|gb|EFF76306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Achromobacter piechaudii ATCC 43553]
Length = 360
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 105/264 (39%), Gaps = 66/264 (25%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH--------KDKPSVKDQTYFLSHLSQAQLRRLI 52
+D ++ +++A+GHYA V A+ K + KDQ+YFL L+QAQL R +
Sbjct: 103 LDHAMALGAEHIATGHYARVREVPAEGGGTQFQLLKALDASKDQSYFLHRLNQAQLSRTL 162
Query: 53 F-----HLVLYPRLT-------------------------------IPME-GIILEAETG 75
F H R+ +P E G IL E G
Sbjct: 163 FPLGDIHKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLPTEPGPILTPE-G 221
Query: 76 DFLEKHRGFWFYTIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFD 125
+ +H G FYT+GQ + LG+ + R YV KD+E NI++V + +
Sbjct: 222 QQVGRHEGLSFYTLGQRKGLGVGGVKGRQREDGTAEAWYVARKDLERNILYVVQGHDHPW 281
Query: 126 KKRHLFHAGSLKLLSGLPPEKISQLHSVFY---NCSLTIEHCEDG--GEDIAVVQLSEDD 180
A ++G PP S Y + + ++ DG D V Q +
Sbjct: 282 LLSSQLQAQDASWVAGHPPAIASYGAKTRYRQADAACRLDQAADGTFALDFEVPQWA--- 338
Query: 181 QGLAAGQFAAFYQGRRCLGSGVIL 204
+ GQ A Y G CLG G+IL
Sbjct: 339 --VTPGQSAVLYDGDVCLGGGIIL 360
>gi|256544685|ref|ZP_05472057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus vaginalis ATCC 51170]
gi|256399574|gb|EEU13179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaerococcus vaginalis ATCC 51170]
Length = 369
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 105/258 (40%), Gaps = 60/258 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57
+D + DY+A+GHYA V S + K S KDQTYFLS LSQ Q++ ++F +
Sbjct: 115 LDYAKDLGADYLATGHYARVDRSEGETKMLRGLDSNKDQTYFLSQLSQDQIKDVLFPVGD 174
Query: 58 YPRLTI-------------------------------------PMEGIILEAETGDFLEK 80
+ + EG I++ + G+ + K
Sbjct: 175 LDKKEVRKIAKENNLATADKKDSTGICFIGERNFNEFLSNYLPAKEGNIVDTD-GNIMGK 233
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENN--IVFVSRNYYSFDKKRHLFHAGSLK 137
H G ++TIGQ + LG+ +V KD+E N IV +N R + S
Sbjct: 234 HYGLMYHTIGQRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSSI 293
Query: 138 LLSGLPPEKISQLHSVFYNCSLTIEHCEDGGE------DIAVVQLSEDD-QGLAAGQFAA 190
GL E ++C+ + + D V+++ D + + GQ A
Sbjct: 294 SKKGLKKE---------FDCTCKFRYRQKDINSHVKILDDGRVEITYDKTKAVTPGQAAV 344
Query: 191 FYQGRRCLGSGVILEAWD 208
FY G CLGS +I E ++
Sbjct: 345 FYDGEVCLGSCIIDEVYN 362
>gi|322378091|ref|ZP_08052577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. M334]
gi|321280928|gb|EFX57942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. M334]
Length = 391
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 131 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 190
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 191 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 250
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 251 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 310
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 311 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 366
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 367 YDGEECLGGGLIDNAYRD 384
>gi|449973603|ref|ZP_21814809.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 11VS1]
gi|449179380|gb|EMB81595.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 11VS1]
Length = 373
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 101/255 (39%), Gaps = 63/255 (24%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPRLTI 63
DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L + PR+
Sbjct: 122 DYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLQKPRVRE 181
Query: 64 PME-------------GIILEAET------GDFLEKHRGFWFYT----IGQHQELGLLYI 100
E GI E +L +G +G+H GL+Y
Sbjct: 182 IAEKAGLATAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGEHN--GLMYY 239
Query: 101 VYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
+VV KD+ NI++V + +Y + A + +
Sbjct: 240 TIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSNSLTASQVHFTQNM 299
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAGQFAAFYQGR 195
P +K + NC+ + + + D A V E + + GQ FY G
Sbjct: 300 P-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPGQAVVFYNGD 352
Query: 196 RCLGSGVILEAWDDQ 210
CLG G+I A+ ++
Sbjct: 353 ECLGGGLIDNAYQEE 367
>gi|134093604|ref|YP_001098679.1| tRNA-specific 2-thiouridylase MnmA [Herminiimonas arsenicoxydans]
gi|205816908|sp|A4G213.1|MNMA_HERAR RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|133737507|emb|CAL60550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Herminiimonas arsenicoxydans]
Length = 372
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 96/249 (38%), Gaps = 57/249 (22%)
Query: 10 DYVASGHYANV--VHSSADH------KDKPSVKDQTYFLSHLSQAQLRRLIFHL------ 55
D +A+GHYA V V S D K + KDQ+YFL L+QAQL + +F L
Sbjct: 119 DMIATGHYARVREVTSGPDAGQVQLLKAVDASKDQSYFLHRLNQAQLSKTLFPLGEIRKT 178
Query: 56 ---VLYPRLTIP------MEGIILEAE---------------------TGDFLEKHRGFW 85
+ +L +P GI E G + +H G
Sbjct: 179 EVRKIAEQLQLPNASKKDSTGICFIGERPFREFLNRYLSYQPGPMKTPDGTIVGEHVGLS 238
Query: 86 FYTIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
FYT+GQ + +GL + YV KD+ NN +++ + + AG
Sbjct: 239 FYTLGQRKGIGLGGMKTHKNTDGNSGPWYVARKDVANNTLYIVQGHDHPWLLSSALSAGQ 298
Query: 136 LKLLSG-LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
+ ++G P E++ + + + + D + + GQ A YQG
Sbjct: 299 MSWVAGRAPSEELVAAKTRYRQADVACS--QHATADNLALAFDTPQWAVTPGQSAVLYQG 356
Query: 195 RRCLGSGVI 203
CLG G+I
Sbjct: 357 DVCLGGGII 365
>gi|21283300|ref|NP_646388.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
aureus MW2]
gi|49486454|ref|YP_043675.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
aureus MSSA476]
gi|297207658|ref|ZP_06924093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300911740|ref|ZP_07129183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus TCH70]
gi|418934590|ref|ZP_13488412.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus CIGC128]
gi|418988686|ref|ZP_13536358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus CIG1835]
gi|421148498|ref|ZP_15608158.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|443640002|ref|ZP_21124002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus 21196]
gi|448740348|ref|ZP_21722327.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus
KT/314250]
gi|24638304|sp|Q8NW84.1|MNMA_STAAW RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|56749706|sp|Q6G8U8.1|MNMA_STAAS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|21204740|dbj|BAB95436.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus MW2]
gi|49244897|emb|CAG43358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887675|gb|EFH26573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300885986|gb|EFK81188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus TCH70]
gi|377717779|gb|EHT41954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus CIG1835]
gi|377770684|gb|EHT94445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus CIGC128]
gi|394331641|gb|EJE57724.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|443406277|gb|ELS64861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus 21196]
gi|445548832|gb|ELY17079.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus
KT/314250]
Length = 372
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 60/263 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DYVA+GHYA + H + + KDQTYFL+ LSQ QL +++F +
Sbjct: 112 LDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIG 171
Query: 57 LYPRLTIPM----EGII-------------------------LEAETGDFLE-------K 80
++ + +G++ L A+ GD + K
Sbjct: 172 DIEKIEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGK 231
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
H G +YTIGQ LG+ +VV K++++N+++V + ++ A +
Sbjct: 232 HSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFV 291
Query: 140 SGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGL-----------AAGQF 188
+ PE + L F C+ + + +D V E+D L GQ
Sbjct: 292 N---PED-NDLDQGF-ECTAKFRYRQ---KDTKVFVKRENDHALRVTFAEPVRAITPGQA 343
Query: 189 AAFYQGRRCLGSGVILEAWDDQG 211
FYQG CLG I + + ++G
Sbjct: 344 VVFYQGDVCLGGATIDDVFKNEG 366
>gi|167629936|ref|YP_001680435.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Heliobacterium modesticaldum Ice1]
gi|205816855|sp|B0TFA7.1|MNMA_HELMI RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|167592676|gb|ABZ84424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Heliobacterium modesticaldum Ice1]
Length = 385
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 49/243 (20%)
Query: 12 VASGHYANVVHSSADHKDK-----PSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPME 66
VA+GHYA + SA + + + KDQ+Y L +++Q QL R +F L + + I +
Sbjct: 123 VATGHYARIEQDSATGRYRLGRGIDANKDQSYALFNMTQEQLSRTLFPLGGFTKPEIREK 182
Query: 67 ----GIILEA-----------------------------------ETGDFLEKHRGFWFY 87
G+ + + + G+ + HRG FY
Sbjct: 183 AAQLGLAVASKPDSQEICFIPDNDYRRFLEERYPDHRFQPGPFVDQEGNVIGTHRGLPFY 242
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL--PPE 145
T+GQ + LG+ + YV+ D+E+N V + + + +R L + ++GL P E
Sbjct: 243 TVGQRKGLGVAFGFPAYVIALDVEHNAVVIGPD-EAVKGRRLLADDLNWIDIAGLKAPME 301
Query: 146 KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+++ I +DG +V+ + + + GQ FY+G +G G I+
Sbjct: 302 VEAKIRYSASPAIAVISPVKDG--SAVIVEFAAPQRAITPGQAVVFYRGDWVVGGGTIVR 359
Query: 206 AWD 208
D
Sbjct: 360 NLD 362
>gi|285018226|ref|YP_003375937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas albilineans GPE PC73]
gi|283473444|emb|CBA15949.1| probable trna
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
protein [Xanthomonas albilineans GPE PC73]
Length = 397
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 51/251 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVL 57
+DA + + +A+GHYA V + + KDQ+YFL L QAQL +F +
Sbjct: 126 LDAARDLGAERIATGHYARVAFVDRRWRLLRGLDRNKDQSYFLHQLGQAQLAATLFPVGE 185
Query: 58 YPR---------LTIPME------GII--------------LEAETGDF-------LEKH 81
P+ +P GI L A G+ + +H
Sbjct: 186 LPKEQVRRIARQAGLPTHAKKDSTGICFIGERDFRTFLSRYLPARRGEIRDPHEQIVAEH 245
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YV+ KD+ N+++V ++ S + S
Sbjct: 246 PGVFYFTLGQREGLNIGGVRGRAAAPWYVIGKDVARNVLYVDQDRDSPHLMATQLRSESA 305
Query: 137 KLLSGLPPEK----ISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
++G PP + +Q + +E +DG VQ + + + GQ Y
Sbjct: 306 HWIAGAPPARHFACRAQTRYRQADEPCMVEIRDDG---TLTVQFTRPQRAVTPGQSLVLY 362
Query: 193 QGRRCLGSGVI 203
QG CLG VI
Sbjct: 363 QGEECLGGAVI 373
>gi|384427887|ref|YP_005637246.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas campestris pv. raphani 756C]
gi|341936989|gb|AEL07128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Xanthomonas campestris pv. raphani 756C]
Length = 369
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 55/253 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
++A ++ + +A+GHYA V H + KDQ+YFL L Q+QL +F +
Sbjct: 100 LEAAQALGAERIATGHYARVAHLGGRWRLLRGADRNKDQSYFLHQLGQSQLAATLFPIGE 159
Query: 56 -------VLYPRLTIPME--------------------GIILEAETGDF-------LEKH 81
+ +P G L A TG+ + +H
Sbjct: 160 LEKSALRRIAQEAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 219
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 220 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVGSNVLYVDQDRDSPLLQSRWLQSEQA 279
Query: 137 KLLSGLPPEK-ISQLHSVFYN-----CSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
++G PP + S Y C++T++ +DG V + + GQ
Sbjct: 280 HWVTGAPPARSFSCTAQTRYRQPDEPCTVTVQ--DDG---TLQVHFERPQRAVTPGQSLV 334
Query: 191 FYQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 335 LYDGEECLGGAVI 347
>gi|289168790|ref|YP_003447059.1| tRNA methyl transferase [Streptococcus mitis B6]
gi|288908357|emb|CBJ23199.1| tRNA methyl transferase [Streptococcus mitis B6]
Length = 373
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDDDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEKAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|373452218|ref|ZP_09544134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eubacterium sp. 3_1_31]
gi|371966907|gb|EHO84386.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Eubacterium sp. 3_1_31]
Length = 387
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 118/274 (43%), Gaps = 66/274 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHS---SADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
M + FD +A+GHYA V H+ S + S KDQTYFL +SQ L +F +
Sbjct: 119 MKYARKLGFDILATGHYAQVEHTPLYSRMLRGADSNKDQTYFLCQVSQDALAHALFPIGN 178
Query: 56 -------VLYPRLTI-----------------------------PMEGIILEAETGDFLE 79
V+ +L + +G I++ + + +
Sbjct: 179 LNKAEVRVIAQKLELESVATKKDSTGICFIGERNFKEFLQNYLPSQDGDIVDIHSLEVIG 238
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL 138
+H G +YTIGQ + LG+ +VV KD+ NI++V+ ++K L+ +
Sbjct: 239 RHIGVLYYTIGQRKGLGIGGNKGPWFVVGKDVHKNILYVTNG----NEKDWLYSTSCI-- 292
Query: 139 LSG---LPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD------QGLAA---G 186
+SG L P K Y C+ + + E I++ + E QG+A+ G
Sbjct: 293 VSGVNWLRPHKPENE----YACTAKFRYRQQDHE-ISLQFIDETTVLVCYPQGVASVTCG 347
Query: 187 QFAAFYQGRRCLGSGVILEAWDDQGFPVCKKALE 220
Q A FY G+ CLG GVI E + D G + KK E
Sbjct: 348 QEAVFYDGQECLGGGVIEEVFCD-GISMQKKIEE 380
>gi|384449299|ref|YP_005661901.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila pneumoniae LPCoLN]
gi|269303316|gb|ACZ33416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila pneumoniae LPCoLN]
Length = 361
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 103/241 (42%), Gaps = 54/241 (22%)
Query: 10 DYVASGHYANV---VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL---------VL 57
DY+A+GHY + + + + KDQ+YFLS ++ L ++F L +
Sbjct: 119 DYLATGHYCRLNTELQETQLLRGCDPQKDQSYFLSGTPKSALHNVLFPLGEMNKTEVRAI 178
Query: 58 YPRLTIPM----------------------------EGIILEAETGDFLEKHRGFWFYTI 89
+ +P G I++ +T + + +H+G +YTI
Sbjct: 179 AAQAALPTAEKKDSTGICFIGKRPFKEFLEKFLPNKTGNIIDWDTKEIVGQHQGAHYYTI 238
Query: 90 GQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
GQ + L L YVV K+IE N +++ R D + + + L+ P K S
Sbjct: 239 GQRRGLDLGGSEKPCYVVGKNIEENSIYIVRGE---DHPQLYLRELTARELNWFTPPK-S 294
Query: 149 QLHS---VFYNC---SLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
H V Y + TI++ D D V+ S+ + + GQ AFYQG CLGSGV
Sbjct: 295 GCHCSAKVRYRSPDEACTIDYSSD---DEVKVRFSQPVKAVTPGQTIAFYQGDTCLGSGV 351
Query: 203 I 203
I
Sbjct: 352 I 352
>gi|419479040|ref|ZP_14018853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA19101]
gi|419498734|ref|ZP_14038434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47597]
gi|379574374|gb|EHZ39317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA19101]
gi|379603622|gb|EHZ68390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47597]
gi|429317141|emb|CCP36889.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SPN034156]
Length = 373
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 106/258 (41%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GII--------------LEAETGDFLE-------K 80
+ P + E GI L A+ G + +
Sbjct: 173 HLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYRY-----VVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ LG+ Y VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGYNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFALECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|335030292|ref|ZP_08523785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantis SK1076]
gi|421276526|ref|ZP_15727348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SPAR10]
gi|334266540|gb|EGL85017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantis SK1076]
gi|395877002|gb|EJG88073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SPAR10]
Length = 373
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL I E + A+ D +L G G+ +
Sbjct: 173 HLEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|385799608|ref|YP_005836012.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Halanaerobium praevalens DSM 2228]
gi|309388972|gb|ADO76852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Halanaerobium praevalens DSM 2228]
Length = 360
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 99/245 (40%), Gaps = 55/245 (22%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPME 66
DY+ASGHYA + + + K + KDQ+Y L L+Q QL + +F L Y + I +
Sbjct: 121 DYIASGHYAKIEKENGRYILKKGLDENKDQSYMLYVLNQEQLSQTLFPLSEYTKSEIREK 180
Query: 67 ---------------------------------------GIILEAETGDFLEKHRGFWFY 87
G IL++E G+ + +H G Y
Sbjct: 181 AKNLGFEIHNKAESQEICFVPDDDYVRFLDNNYPEISNTGPILDSE-GNKVGEHEGLAHY 239
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-KLLSGLPPEK 146
TIGQ + LG+ YV D E N V V ++ + +F G + + L+ +P E
Sbjct: 240 TIGQRRGLGISMGYPIYVTNLDYEKNAVIVGKD-------KSVFSDGLIAEELNFIPFED 292
Query: 147 ISQLHSV----FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
I V YN + E D V+ E + + GQ FY G LG G+
Sbjct: 293 IDGRMEVEAQIRYNSFPVKAYIEKIKNDEVKVEFEEAQRAVTPGQSVVFYLGDLVLGGGI 352
Query: 203 ILEAW 207
I +++
Sbjct: 353 IKKSF 357
>gi|308189959|ref|YP_003922890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma fermentans JER]
gi|319777241|ref|YP_004136892.1| tRNA-specific 2-thiouridylase mnma [Mycoplasma fermentans M64]
gi|307624701|gb|ADN69006.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma fermentans JER]
gi|318038316|gb|ADV34515.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma fermentans M64]
Length = 372
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 44/245 (17%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
A + DY+A GHYA V + ++ K KDQTYFL+ L+ QL +++ L YP+
Sbjct: 123 AFEKLNADYIAMGHYAKVKNGKL-YRAKDQNKDQTYFLAQLTNQQLEKVLMPLADYPKEE 181
Query: 63 I-------------------------------------PMEGIILEAETGDFLEKHRGFW 85
I +G IL+ +T + L H G +
Sbjct: 182 IRKIAKKLDLATATKKDSTGICFIGERHFTKFLQNYIPAQKGKILDIKTKEVLGTHDGCF 241
Query: 86 FYTIGQHQELGL-LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL-SGLP 143
+YTIGQ + L L YV D++NNI++ + + ++ A +L L
Sbjct: 242 YYTIGQRKGLNLGGKSEAHYVCGHDVKNNIIYAAPASDPSYLESNMLIASNLCLNHHRFN 301
Query: 144 PEKIS-QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
K+S + + + +E E+ I V S+ Q + GQ Y +CLG +
Sbjct: 302 KNKLSAKFRYRQKDLKVKVEFLENN--KIKVFYPSK-AQAVTPGQQVVLYDQDKCLGGAI 358
Query: 203 ILEAW 207
I E +
Sbjct: 359 IEEIY 363
>gi|302876907|ref|YP_003845540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium cellulovorans 743B]
gi|307687595|ref|ZP_07630041.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulovorans 743B]
gi|302579764|gb|ADL53776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium cellulovorans 743B]
Length = 373
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 57/252 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
+D ++ DY+A GHYA V ++K KDQTYFL L+Q QL + +F +
Sbjct: 114 LDFALTVGADYIAMGHYAQVDFRDGEYKLLRAADENKDQTYFLCKLNQYQLSKSMFPIGH 173
Query: 56 VLYPRLT----------------------------------IPMEGIILEAETGDFLEKH 81
+ P + +P + + G+ + +H
Sbjct: 174 LRKPEVREKAREANLVTATKKDSTGVCFIGEKNFRQFLNNYLPAKSGPMMTLDGNVMGEH 233
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G YT+GQ + LG+ +VV+KD++ NI++V + ++ L+ G L+
Sbjct: 234 IGLMHYTLGQRKGLGIGGAGEPWFVVDKDLKKNILYVVQG----EQDPRLYSYG----LT 285
Query: 141 GLPPEKISQLHSV-FYNCSLTIEHCE-DGG-------EDIAVVQLSEDDQGLAAGQFAAF 191
+ IS+ +NC+ + + D G ++ +V+ E + + GQ F
Sbjct: 286 AVEVSWISEKEKPKTFNCTAKFRYRQKDQGVIVHQREDNTCIVEFIEPQKAITPGQIVVF 345
Query: 192 YQGRRCLGSGVI 203
Y G CLG G I
Sbjct: 346 YDGDECLGGGTI 357
>gi|321312277|ref|YP_004204564.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BSn5]
gi|428280201|ref|YP_005561936.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
[Bacillus subtilis subsp. natto BEST195]
gi|291485158|dbj|BAI86233.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
[Bacillus subtilis subsp. natto BEST195]
gi|320018551|gb|ADV93537.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BSn5]
Length = 371
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 42/246 (17%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL------- 55
S+ DY+A+GHYA V S + + KDQTYFL+ L++ L +++F +
Sbjct: 119 SLGADYLATGHYARVDRSGEKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIGELQKSR 178
Query: 56 --------VLYPRLTIPMEGII--------------LEAETGDFLE-------KHRGFWF 86
L GI L A+ GD + +H G +
Sbjct: 179 VREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGDMMTMDGEVKGRHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG--LP 143
YTIGQ LG+ + V KD+E NI++V + +++ A ++ + +
Sbjct: 239 YTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNISWVRSDIMK 298
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
E+IS Y GE A V E + + GQ FY G CLG G I
Sbjct: 299 GEEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFYDGEECLGGGTI 358
Query: 204 LEAWDD 209
+ + D
Sbjct: 359 DDVYKD 364
>gi|197303193|ref|ZP_03168235.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC
29176]
gi|197297733|gb|EDY32291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Ruminococcus lactaris ATCC 29176]
Length = 358
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 91/245 (37%), Gaps = 52/245 (21%)
Query: 6 SMEFDYVASGHYANVVH----SSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRL 61
S+ DY+A+GHYA + H A + KDQTY L +L+Q QL R + + Y +
Sbjct: 120 SIGADYIATGHYARIEHLPNGRYAIRRSATMEKDQTYALYNLTQEQLARTLMPVGEYSKD 179
Query: 62 TI--------------PMEGIILEAETGDF------------------------LEKHRG 83
I P I GD+ L KH+G
Sbjct: 180 RIREMADEIGLLVAHKPDSQDICFVPDGDYASFIENTTDQVLPTGNFVTPEGKVLGKHKG 239
Query: 84 FWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP 143
YT+GQ + LGL +V+E E N V + S + A L +S
Sbjct: 240 IIHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTYEESLT---YTVRANELNFMS--- 293
Query: 144 PEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
E+I++ +F YN E GED V E + GQ Y G LG
Sbjct: 294 VEQITEPVRIFAKIRYNHKGAWCTVERTGEDEIVCTFDEPIRAATPGQAVVLYDGEYVLG 353
Query: 200 SGVIL 204
G IL
Sbjct: 354 GGTIL 358
>gi|406594255|ref|YP_006741508.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci MN]
gi|410858324|ref|YP_006974264.1| tRNA-methyltransferase [Chlamydia psittaci 01DC12]
gi|405782687|gb|AFS21435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci MN]
gi|410811219|emb|CCO01864.1| tRNA-methyltransferase [Chlamydia psittaci 01DC12]
Length = 362
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 100/250 (40%), Gaps = 59/250 (23%)
Query: 4 ISSMEFDYVASGHYA--NVVHSSADH-KDKPSVKDQTYFLSHLSQAQLRRLIFHL----- 55
+ +E D++A+GHY +V + + K KDQ+YFL Q L+ ++F L
Sbjct: 113 VVELEGDFLATGHYCRLDVRRQGVELLRGKDPHKDQSYFLCGTRQESLKNVLFPLGDMTK 172
Query: 56 --------------------------------VLYPRLTIPMEGIILEAETGDFLEKHRG 83
+ +EG I++ ++ + H G
Sbjct: 173 TEVRAIAAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPNLEGDIMDYDSQKIVGSHEG 232
Query: 84 FWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
+YTIGQ + L + YVV KD+E NIV++ + + A L +
Sbjct: 233 AHYYTIGQRRGLDIGGSEKPCYVVGKDMEKNIVYIVQGEDHPLLYQQELTAKELNWF--V 290
Query: 143 PPEKISQLHSVFYNCSLTI------EHCE---DGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
PE I++ CS + E CE G +D V+ + + + GQ AFY
Sbjct: 291 SPESITR-------CSAKVRYRSEDEECEILHTGEQDKVRVRFASPVKAITPGQTIAFYD 343
Query: 194 GRRCLGSGVI 203
G RCLG GVI
Sbjct: 344 GERCLGGGVI 353
>gi|347534658|ref|YP_004841328.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sanfranciscensis
TMW 1.1304]
gi|345504714|gb|AEN99396.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus sanfranciscensis
TMW 1.1304]
Length = 382
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 103/258 (39%), Gaps = 50/258 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVH--SSADH--KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DY+A GHYA + + +H + KDQTYFLS LS QL R++F +
Sbjct: 121 LDYAMDLGADYIAMGHYAQLKRDENGKNHLLRSTDLNKDQTYFLSQLSAEQLDRVMFPIG 180
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
+ P + IP + + G+ +
Sbjct: 181 GMTKPEVREIAHEANLYVADKKDSMGVCFIGPNNFNQFLSNYIPAKSGKMMTMNGEVKGE 240
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ + LG+ +V+ KD+ NI++V + Y + A +
Sbjct: 241 HVGLMYYTIGQRKGLGIGGDGQDNRPWFVIGKDLSKNILYVGKGYENPYLYADYLTASDV 300
Query: 137 KLLSGLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+ G + + F + +T+ H D G+ + V + + + + GQ FY
Sbjct: 301 SWVDGNDRGNDFRCTAKFRYRQTDVPVTV-HLSDDGKQVKV-EFDDPARAVTPGQAVVFY 358
Query: 193 QGRRCLGSGVILEAWDDQ 210
G CLG I A+ DQ
Sbjct: 359 DGDECLGYATIDAAFKDQ 376
>gi|15902166|ref|NP_357716.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae R6]
gi|15457661|gb|AAK98926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae R6]
Length = 391
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 131 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 190
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 191 HLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 250
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 251 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 310
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 311 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 366
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 367 YDGEECLGGGLIDNAYRD 384
>gi|307711099|ref|ZP_07647521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK321]
gi|307617061|gb|EFN96239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK321]
Length = 373
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL + E + A+ D +L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKTFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|408790492|ref|ZP_11202111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus florum 2F]
gi|408520216|gb|EKK20304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus florum 2F]
Length = 372
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 62/252 (24%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPRLT- 62
DY+A GHYA + H + KDQTYFLS LS QL R++F + + P +
Sbjct: 120 DYIAMGHYAQLKRDEQGHNHLLRSTDLNKDQTYFLSQLSTDQLDRILFPVGGMTKPEVRE 179
Query: 63 ---------------------------------IPMEGIILEAETGDFLEKHRGFWFYTI 89
+P + + G+ +H+G +YTI
Sbjct: 180 IAHEAQLYVADKKDSMGVCFIGPNNFDNFLSEYLPAQPGKMMTFDGEVKGQHQGLMYYTI 239
Query: 90 GQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
GQ + LG+ + +VV KD+ +N+++V + Y + HL+ L SG+
Sbjct: 240 GQRRGLGIGGDGHDNQPWFVVGKDLAHNVLYVGKGY----ENPHLY--ADYLLASGMSWV 293
Query: 146 KISQLHSVFY----------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ + F+ + +T+ DG D V E + + GQ YQG
Sbjct: 294 AGNTMGQDFHCTAKFRYRQRDVGVTVHVDPDG--DRVRVDFDEPARAVTPGQALVLYQGA 351
Query: 196 RCLGSGVILEAW 207
CLG I A+
Sbjct: 352 ECLGEATIDAAY 363
>gi|392972285|ref|ZP_10337677.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046388|ref|ZP_10901858.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus sp. OJ82]
gi|392509998|emb|CCI60980.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus equorum subsp.
equorum Mu2]
gi|402763795|gb|EJX17887.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus sp. OJ82]
Length = 370
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 42/244 (17%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF------------ 53
DYVA+GHYA V H + + KDQTYFL+ LSQ QL R++F
Sbjct: 121 DYVATGHYARVRRHEDGHVEMLRGVDNNKDQTYFLNQLSQDQLSRVMFPIGDIEKSEVRR 180
Query: 54 ------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+ + +P + + TGD + H G +YTI
Sbjct: 181 IAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGDMVTLTGDKIGTHAGLMYYTI 240
Query: 90 GQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
GQ LG+ +VV K++++N+++V + ++ A + ++ + E+
Sbjct: 241 GQRHGLGIGGDGDPWFVVGKNLDDNVLYVEQGFHHDALYSDYLIASDISFVNTVDLEEGF 300
Query: 149 QLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207
+ + F Y T + ++ V +E + + GQ Y G CLG I + +
Sbjct: 301 ECSAKFRYRQKDTKVFVKKENDNAIRVLFAEPVRAITPGQSVVLYDGDVCLGGATIDDVF 360
Query: 208 DDQG 211
+ G
Sbjct: 361 KESG 364
>gi|417794094|ref|ZP_12441357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus oralis SK255]
gi|334271204|gb|EGL89598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus oralis SK255]
Length = 373
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL + E ++ A+ D +L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLVTAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|238809910|dbj|BAH69700.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 382
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 44/245 (17%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
A + DY+A GHYA V + ++ K KDQTYFL+ L+ QL +++ L YP+
Sbjct: 133 AFEKLNADYIAMGHYAKVKNGKL-YRAKDQNKDQTYFLAQLTNQQLEKVLMPLADYPKEE 191
Query: 63 I-------------------------------------PMEGIILEAETGDFLEKHRGFW 85
I +G IL+ +T + L H G +
Sbjct: 192 IRKIAKKLDLATATKKDSTGICFIGERHFTKFLQNYIPAQKGKILDIKTKEVLGTHDGCF 251
Query: 86 FYTIGQHQELGL-LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL-SGLP 143
+YTIGQ + L L YV D++NNI++ + + ++ A +L L
Sbjct: 252 YYTIGQRKGLNLGGKSEAHYVCGHDVKNNIIYAAPASDPSYLESNMLIASNLCLNHHRFN 311
Query: 144 PEKIS-QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
K+S + + + +E E+ I V S+ Q + GQ Y +CLG +
Sbjct: 312 KNKLSAKFRYRQKDLKVKVEFLENN--KIKVFYPSK-AQAVTPGQQVVLYDQDKCLGGAI 368
Query: 203 ILEAW 207
I E +
Sbjct: 369 IEEIY 373
>gi|254492565|ref|ZP_05105737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylophaga thiooxidans DMS010]
gi|224462457|gb|EEF78734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylophaga thiooxydans DMS010]
Length = 367
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 48/239 (20%)
Query: 12 VASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT------ 62
+A+GHYA V K KDQ+YFL L Q QL R +F L P+
Sbjct: 122 IATGHYARVAERDGKFHLLKGLDDKKDQSYFLYTLGQQQLSRTLFPLGELPKTEVRQIAE 181
Query: 63 ------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIGQH 92
IP + + G+ + +H G +YT+GQ
Sbjct: 182 QAGFINHDKKDSTGICFIGERHFREFLSRYIPAQPGEMRTPDGEKIGEHAGLMYYTLGQR 241
Query: 93 QELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
Q LG+ +V KD+EN I++V + + + ++L A L ++G PE
Sbjct: 242 QGLGIGGRKNSTGEPWFVAGKDMENRILYVVQGDHPWLWSQNL-TAEQLSWVAGEEPEFP 300
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQ--GLAAGQFAAFYQGRRCLGSGVIL 204
+ + + C +D ++ + DD+ + GQ FYQ CLG G+I+
Sbjct: 301 CRA-AAKTRYRQPDQPCTISKDDNGLIHVEFDDKQRAVTPGQSVVFYQQDDCLGGGIIV 358
>gi|329942704|ref|ZP_08291483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila psittaci Cal10]
gi|332287299|ref|YP_004422200.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila psittaci 6BC]
gi|384450451|ref|YP_005663051.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila psittaci 6BC]
gi|384451453|ref|YP_005664051.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Chlamydophila psittaci 01DC11]
gi|384452426|ref|YP_005665023.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila psittaci 08DC60]
gi|384453402|ref|YP_005665998.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Chlamydophila psittaci C19/98]
gi|384454381|ref|YP_005666976.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila psittaci 02DC15]
gi|392376540|ref|YP_004064318.1| tRNA-methyltransferase [Chlamydophila psittaci RD1]
gi|407453868|ref|YP_006732976.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci 84/55]
gi|407460535|ref|YP_006738310.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci WC]
gi|313847883|emb|CBY16878.1| tRNA-methyltransferase [Chlamydophila psittaci RD1]
gi|325507227|gb|ADZ18865.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila psittaci 6BC]
gi|328814964|gb|EGF84953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila psittaci Cal10]
gi|328914545|gb|AEB55378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila psittaci 6BC]
gi|334692183|gb|AEG85402.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Chlamydophila psittaci C19/98]
gi|334693163|gb|AEG86381.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Chlamydophila psittaci 01DC11]
gi|334694138|gb|AEG87355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila psittaci 02DC15]
gi|334695115|gb|AEG88331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydophila psittaci 08DC60]
gi|405780627|gb|AFS19377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci 84/55]
gi|405787339|gb|AFS26083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci WC]
Length = 362
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 97/244 (39%), Gaps = 59/244 (24%)
Query: 10 DYVASGHYA--NVVHSSADH-KDKPSVKDQTYFLSHLSQAQLRRLIFHL----------- 55
D++A+GHY +V + + K KDQ+YFL Q L+ ++F L
Sbjct: 119 DFLATGHYCRLDVRRQGVELLRGKDPHKDQSYFLCGTRQESLKNVLFPLGDMTKTEVRAI 178
Query: 56 --------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+ +EG I++ ++ + H G +YTI
Sbjct: 179 AAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPNLEGDIMDYDSQKIVGSHEGAHYYTI 238
Query: 90 GQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
GQ + L + YVV KD+E NIV++ R + A L + PE I+
Sbjct: 239 GQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWF--VSPESIT 296
Query: 149 QLHSVFYNCSLTI------EHCE---DGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
+ CS + E CE G +D V+ + + + GQ AFY G RCLG
Sbjct: 297 R-------CSAKVRYRSEDEECEILHTGEQDKVRVRFASPVKAITPGQTIAFYDGERCLG 349
Query: 200 SGVI 203
GVI
Sbjct: 350 GGVI 353
>gi|418145374|ref|ZP_12782160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13637]
gi|353816248|gb|EHD96457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13637]
Length = 373
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 98/249 (39%), Gaps = 53/249 (21%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPRLTI 63
DYVA+GHYA VV + + KDQTYFLS LSQ QL++ +F L + P +
Sbjct: 122 DYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRK 181
Query: 64 PME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--QELGLLYIVY 102
E GI E ++L G G+ + GL+Y
Sbjct: 182 LAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGEHAGLMYYTI 241
Query: 103 R------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
+VV KD+ NI++V + +Y A + +P
Sbjct: 242 GQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTREMPE 301
Query: 145 EKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
E + + F + +T+ H + D A V +E + + GQ FY G CLG
Sbjct: 302 EFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVFYDGEECLGG 357
Query: 201 GVILEAWDD 209
G+I A+ D
Sbjct: 358 GLIDNAYRD 366
>gi|330833760|ref|YP_004402585.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3]
gi|329307983|gb|AEB82399.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3]
Length = 419
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 159 LDYAMNLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P++ E GI E G +L G G+ +
Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTVDGRDMGE 278
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 279 HTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQ 338
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E V +E + + G+ F
Sbjct: 339 VHFTRDMPEEFKLECTAKFRYRQPDSQVTVKVKGDKAE----VIFAEPQRAITPGKAVVF 394
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G+ CLG G+I A+ D
Sbjct: 395 YDGQECLGGGMIDMAYKD 412
>gi|307710241|ref|ZP_07646684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK564]
gi|307619003|gb|EFN98136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK564]
Length = 373
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|430755884|ref|YP_007208745.1| tRNA methyl transferase [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430020404|gb|AGA21010.1| tRNA methyl transferase [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 374
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 42/246 (17%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL------- 55
S+ DY+A+GHYA V S + + KDQTYFL+ L++ L +++F +
Sbjct: 122 SLGADYLATGHYARVDRSGEKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIGELQKSR 181
Query: 56 --------VLYPRLTIPMEGII--------------LEAETGDFLE-------KHRGFWF 86
L GI L A+ GD + +H G +
Sbjct: 182 VREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGDMMTMDGEVKGRHDGLMY 241
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG--LP 143
YTIGQ LG+ + V KD+E NI++V + +++ A ++ + +
Sbjct: 242 YTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNISWVRSDIMK 301
Query: 144 PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
E+IS Y GE A V E + + GQ FY G CLG G I
Sbjct: 302 GEEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFYDGEECLGGGTI 361
Query: 204 LEAWDD 209
+ + D
Sbjct: 362 DDVYKD 367
>gi|421267363|ref|ZP_15718238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SPAR95]
gi|395872452|gb|EJG83550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SPAR95]
Length = 373
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|339320874|ref|YP_004683396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma bovis Hubei-1]
gi|392429948|ref|YP_006470993.1| tRNA-methyltransferase [Mycoplasma bovis HB0801]
gi|338226999|gb|AEI90061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Mycoplasma bovis Hubei-1]
gi|392051357|gb|AFM51732.1| tRNA-methyltransferase [Mycoplasma bovis HB0801]
Length = 374
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 104/252 (41%), Gaps = 65/252 (25%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP--- 59
A +++ DY+A GHYA V ++ K KDQTYFL+ LS QL+R++ L +
Sbjct: 124 AFNNLGADYIAMGHYAKVTDGRL-YRAKDQNKDQTYFLAQLSHEQLKRVLMPLAEFNSKE 182
Query: 60 ----------------------------RLT------IPME-GIILEAETGDFLEKHRGF 84
+ T IPM+ G I++ T L +H G
Sbjct: 183 EVRKIAQEQGLITASKKDSTGICFIGERKFTKFLQNYIPMQPGDIVDIRTNKKLGEHEGC 242
Query: 85 WFYTIGQHQELGLLYIVY-RYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL-SGL 142
++YTIGQ + L L YV D++ NI++V+ L + S LL +GL
Sbjct: 243 FYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVA-------PSSDLSYLISDALLATGL 295
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAV-----------VQLSEDDQGLAAGQFAAF 191
H+ N S + + EDI V V + Q + GQ
Sbjct: 296 TLNHDDFDHN---NLSAKFRYRQ---EDIPVTIELLPNNTIKVYYPSEAQAVTPGQQVVI 349
Query: 192 YQGRRCLGSGVI 203
Y+G++CLG VI
Sbjct: 350 YEGQKCLGGAVI 361
>gi|312869501|ref|ZP_07729656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus oris PB013-T2-3]
gi|417885490|ref|ZP_12529644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus oris F0423]
gi|311094948|gb|EFQ53237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus oris PB013-T2-3]
gi|341595412|gb|EGS38061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus oris F0423]
Length = 377
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 69/258 (26%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLY--PRLT- 62
DYVA+GHYA++ + + KDQTYFLS L QL +++F L Y P++
Sbjct: 122 DYVATGHYADLKRDADGRMHLMRAADQHKDQTYFLSQLDYHQLDKVLFPLANYTKPQIRE 181
Query: 63 IPMEGIILEAETGD-----FLEKHRGFWFY------------------TIGQHQELGLLY 99
I E + AE D F+ + F + +GQH +GL+Y
Sbjct: 182 IAKEAGLATAEKKDSVGICFIGEDGHFREFLSQYIPAQPGNMETVDGKVVGQH--MGLMY 239
Query: 100 IVYR-----------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
+V+ KDIE N+++V + Y++ HL+ A L+
Sbjct: 240 YTIGQRRGLGLGGNKESNEPWFVIGKDIEKNVLYVGQGYHN----EHLY-ATHLEASDIH 294
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAV-VQLSEDDQ-----------GLAAGQFAA 190
+ + + ++C+ + + +D+ V V++++DDQ + GQ
Sbjct: 295 WVDDVVSRYGREFHCTAKFRYRQ---KDVGVTVRIADDDQMVTVTFDDPARAITPGQAVV 351
Query: 191 FYQGRRCLGSGVILEAWD 208
FY G+ CLGS +I A++
Sbjct: 352 FYDGQECLGSAIIDRAYN 369
>gi|395216323|ref|ZP_10401299.1| tRNA-specific 2-thiouridylase MnmA [Pontibacter sp. BAB1700]
gi|394455475|gb|EJF09945.1| tRNA-specific 2-thiouridylase MnmA [Pontibacter sp. BAB1700]
Length = 375
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 99/241 (41%), Gaps = 51/241 (21%)
Query: 10 DYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF------------- 53
D++A+GHYAN+ + + K KDQ+Y L +SQ L R +F
Sbjct: 125 DFIATGHYANIREENGRYVISKGLDENKDQSYALWGISQESLSRTMFPLGKLRKTEIRQM 184
Query: 54 -------HLVLYPR----LTIP-----------MEGIILEAETGDFL-------EKHRGF 84
LV P IP +EG+ + G+F+ KH G+
Sbjct: 185 AMDRGFTELVNKPESYEICFIPDNDYRGFLKRRVEGLEEQVAGGEFVLEDGTVVGKHEGY 244
Query: 85 WFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS--GL 142
FYTIGQ + LG+ YV + E N V + NY D ++ G L ++ L
Sbjct: 245 PFYTIGQRKGLGIALGFPAYVTRIEKETNRVILG-NYE--DLAKNAMTVGKLNMVKYENL 301
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
+ I + V YN T E G+ + V LS +A GQ A FY+G +G G
Sbjct: 302 IGQPIPTITKVRYNDPGTEAIIEQEGDKMKVHFLS-GVHAIAPGQAAVFYEGNDVVGGGW 360
Query: 203 I 203
I
Sbjct: 361 I 361
>gi|387129084|ref|YP_006291974.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Methylophaga sp. JAM7]
gi|386270373|gb|AFJ01287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Methylophaga sp. JAM7]
Length = 367
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 93/245 (37%), Gaps = 56/245 (22%)
Query: 12 VASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT------ 62
+A+GHYA V + K KDQ+YFL L QAQL R +F L P+
Sbjct: 122 IATGHYARVREVDGEFQLLKGLDGNKDQSYFLYTLGQAQLSRTLFPLGELPKTEVRQIAD 181
Query: 63 ------------------------------IPMEGIILEAETGDFLEKHRGFWFYTIGQH 92
IP + + GD + +H G +YT+GQ
Sbjct: 182 KAGFITADKKDSTGICFIGERRFREFLSRYIPAKPGEMRTPEGDLIGEHIGLMYYTLGQR 241
Query: 93 QELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE-- 145
Q LG+ +V KD+E ++V + + + L A L ++G PP
Sbjct: 242 QGLGIGGRPNSTGEPWFVAGKDMETRTLYVVQGDHEWLYSDQLI-AEQLSWVAGNPPSLP 300
Query: 146 ----KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
++ +C + + + VV + + + GQ FYQ CLG G
Sbjct: 301 CRATAKTRYRQPDQDCVI-----DQNSQGQIVVTFDDKQRAVTPGQSVVFYQDAVCLGGG 355
Query: 202 VILEA 206
+I++
Sbjct: 356 IIIQT 360
>gi|366165643|ref|ZP_09465398.1| tRNA-specific 2-thiouridylase MnmA [Acetivibrio cellulolyticus CD2]
Length = 360
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 102/248 (41%), Gaps = 55/248 (22%)
Query: 6 SMEFDYVASGHYANVVHSSADHKD---KPSV---KDQTYFLSHLSQAQLRRLIFHLVLYP 59
SM DYVA+GHYA ++ + K K SV KDQTY L +L+Q QL +++ + Y
Sbjct: 120 SMGLDYVATGHYA-IIEYDENRKRYLLKKSVTQQKDQTYALYNLTQDQLSKVLMPIGNYS 178
Query: 60 RLTIPME-------------------------GIILEAET-------------GDFLEKH 81
+ + + G ++ T G+ L +H
Sbjct: 179 KDVVRQKAAELGLCVASKPDSQEICFVDDNNYGRFIQENTDKKIVPGNFVDTKGNILGRH 238
Query: 82 RGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS- 140
+G YT+GQ + LG+ + YV+ D++NN V + N F K A L +S
Sbjct: 239 KGLIHYTVGQRKGLGIAFGKPMYVIGLDVKNNNVILGDNSEVFSDK---LIADDLNFISI 295
Query: 141 -GL--PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197
GL P +++ TI E+G V+ + + GQ FY+
Sbjct: 296 DGLYEPMRVKAKIRYSAKEGDATIIPIENGK---VRVEFDTPQRAITPGQSVVFYEDDIV 352
Query: 198 LGSGVILE 205
+G G+I E
Sbjct: 353 VGGGIIQE 360
>gi|442804377|ref|YP_007372526.1| tRNA-specific 2-thiouridylase MnmA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740227|gb|AGC67916.1| tRNA-specific 2-thiouridylase MnmA [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 362
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 98/247 (39%), Gaps = 53/247 (21%)
Query: 6 SMEFDYVASGHYANVVHSSADHKD--KPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPR 60
SM DY+A+GHYA + + ++ + K SV KDQTY L ++ Q QL R +F + Y +
Sbjct: 118 SMGIDYIATGHYARIEYDASRGRYLLKRSVTDKKDQTYVLYNMKQYQLERTLFPIGNYTK 177
Query: 61 LTI---------------------------------------PMEGIILEAETGDFLEKH 81
T+ P G ++ E G+ L H
Sbjct: 178 ETVRKIAEELGFIVADKPDSQEICFVTDNDYAGFISSRLKKSPEPGYFVDTE-GNILGMH 236
Query: 82 RGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV---SRNYYSFDKKRHLFHAGSLKL 138
+G + YT+GQ + LG+ YVV D +NN V + + Y + L KL
Sbjct: 237 KGIYNYTVGQRKGLGISLGKPMYVVRIDAKNNTVVLGEAGKEYSAGLIASDLNWIAFEKL 296
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
S I + + Y+ + + V+ + + + GQ FY G L
Sbjct: 297 ES-----PIRAMAKIRYSAKESEAVITPLDNNKVKVEFTYPQRAVTPGQAVVFYDGDIVL 351
Query: 199 GSGVILE 205
G G+I E
Sbjct: 352 GGGIIEE 358
>gi|389857672|ref|YP_006359915.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST1]
gi|353741390|gb|AER22397.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST1]
Length = 419
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 159 LDYAMNLGADYVATGHYAQVTRDEEGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P++ E GI E G +L G G+ +
Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLPAQPGRMMTVDGRDMGE 278
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 279 HTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSQNILYVGQGFYHESLMSTSLQASQ 338
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T++ D E I +E + + GQ F
Sbjct: 339 VHFTRDMPEEFTLECTAKFRYRQPDSQVTVKVKGDKAEVI----FAEPQRAITPGQAIVF 394
Query: 192 YQGRRCLGSGVILEAWDD 209
Y + CLG G+I A+ D
Sbjct: 395 YDEQECLGGGMIDMAYKD 412
>gi|21231412|ref|NP_637329.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768534|ref|YP_243296.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991657|ref|YP_001903667.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
campestris str. B100]
gi|24638306|sp|Q8P9A1.1|MNMA_XANCP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|81305494|sp|Q4UUJ7.1|MNMA_XANC8 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|205829008|sp|B0RT32.1|MNMA_XANCB RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|21113079|gb|AAM41253.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66573866|gb|AAY49276.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str.
8004]
gi|167733417|emb|CAP51618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
methyltransferase [Xanthomonas campestris pv.
campestris]
Length = 378
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 102/253 (40%), Gaps = 55/253 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHL-- 55
++A ++ + +A+GHYA V H + KDQ+YFL L Q+QL +F +
Sbjct: 109 LEAAQALGAERIATGHYARVAHLGGRWRLLRGADRNKDQSYFLHQLGQSQLAATLFPIGE 168
Query: 56 -------VLYPRLTIPME--------------------GIILEAETGDF-------LEKH 81
+ +P G L A TG+ + +H
Sbjct: 169 LEKSALRRIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLPARTGEIRDPQGQRIAEH 228
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +++T+GQ + L + + R YVV KD+ +N+++V ++ S + +
Sbjct: 229 PGVFYFTLGQREGLNIGGVRGRAAAPWYVVGKDVGSNVLYVDQDRDSPLLQSRWLQSEQA 288
Query: 137 KLLSGLPPEK-ISQLHSVFYN-----CSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
++G PP + S Y C++T++ +DG V + + GQ
Sbjct: 289 HWVTGAPPARSFSCTAQTRYRQPDEPCTVTVQ--DDG---TLQVNFERPQRAVTPGQSLV 343
Query: 191 FYQGRRCLGSGVI 203
Y G CLG VI
Sbjct: 344 LYDGEECLGGAVI 356
>gi|116516757|ref|YP_815643.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae D39]
gi|421265223|ref|ZP_15716107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SPAR27]
gi|30173410|sp|Q8CWW0.2|MNMA_STRR6 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|122279467|sp|Q04MV1.1|MNMA_STRP2 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|116077333|gb|ABJ55053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae D39]
gi|395869245|gb|EJG80360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SPAR27]
Length = 373
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|220917573|ref|YP_002492877.1| tRNA-specific 2-thiouridylase MnmA [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955427|gb|ACL65811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 351
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 88/242 (36%), Gaps = 60/242 (24%)
Query: 12 VASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPMEG- 67
+A+GHYA V KDQ+YFL L Q LR ++F + + + E
Sbjct: 119 LATGHYARVEERGGRRALLTAADPAKDQSYFLYGLGQDALRDVLFPVGALAKPVVRAEAA 178
Query: 68 ----------------IILEAETGDF---------------------LEKHRGFWFYTIG 90
+ + GDF L +H G +T+G
Sbjct: 179 RAGLAVADKPDSQEICFVTRGDAGDFVALRAPARIRAGEIVSTAGEVLGRHDGVHRFTVG 238
Query: 91 QHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQL 150
Q + LG+ V RYVV D V V + + R F +SG PP +L
Sbjct: 239 QRRGLGIAGAVPRYVVRLDAATARVVVG---SAEEASRDRFEVREASWVSGAPPAGPVEL 295
Query: 151 HSVFYNCSLTIEHCEDG---------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ + H +G G A V+L+ +G+A GQ A FY G +G G
Sbjct: 296 R-------VKVRHRHEGERGTVRAVSGGAGADVRLARPVRGVAPGQAAVFYAGDEVVGGG 348
Query: 202 VI 203
I
Sbjct: 349 RI 350
>gi|418967166|ref|ZP_13518847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK616]
gi|383345121|gb|EID23255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK616]
Length = 373
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL + E + A+ D +L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQSGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|407459161|ref|YP_006737264.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci M56]
gi|405786122|gb|AFS24867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci M56]
Length = 362
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 96/244 (39%), Gaps = 59/244 (24%)
Query: 10 DYVASGHYA--NVVHSSADH-KDKPSVKDQTYFLSHLSQAQLRRLIFHL----------- 55
D+ A+GHY +V + + K KDQ+YFL Q L+ ++F L
Sbjct: 119 DFFATGHYCRLDVRRQGVELLRGKDPHKDQSYFLCGTRQESLKNVLFPLGDMTKTEVRAI 178
Query: 56 --------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+ +EG I++ ++ + H G +YTI
Sbjct: 179 AAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPNLEGDIIDYDSQKIVGSHEGAHYYTI 238
Query: 90 GQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
GQ + L + YVV KD+E NIV++ R + A L + PE I+
Sbjct: 239 GQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWF--VSPEAIT 296
Query: 149 QLHSVFYNCSLTI------EHCE---DGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
+ CS + E CE G +D V+ + + + GQ AFY G RCLG
Sbjct: 297 R-------CSAKVRYRSEDEECEILHTGEQDKVCVRFASPVKAITPGQTIAFYDGERCLG 349
Query: 200 SGVI 203
GVI
Sbjct: 350 GGVI 353
>gi|417897997|ref|ZP_12541923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus 21259]
gi|341849499|gb|EGS90642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus 21259]
Length = 372
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 60/263 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DYVA+GHYA + H + + KDQTYFL+ LSQ QL +++F +
Sbjct: 112 LDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIG 171
Query: 57 LYP----RLTIPMEGII-------------------------LEAETGDFLE-------K 80
R +G++ L A+ GD + K
Sbjct: 172 DIEKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGK 231
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
H G +YTIGQ LG+ +VV K++++N+++V + ++ A +
Sbjct: 232 HSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFV 291
Query: 140 SGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGL-----------AAGQF 188
+ PE + L+ F C+ + + +D V E+D L GQ
Sbjct: 292 N---PED-NDLYQGF-ECTAKFRYRQ---KDTKVFVKRENDHALRVTFAEPVRAITPGQA 343
Query: 189 AAFYQGRRCLGSGVILEAWDDQG 211
FYQG CLG I + + ++G
Sbjct: 344 VVFYQGDVCLGGATIDDVFKNEG 366
>gi|398307305|ref|ZP_10510891.1| tRNA-specific 2-thiouridylase MnmA [Bacillus vallismortis DV1-F-3]
Length = 371
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 100/257 (38%), Gaps = 64/257 (24%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLV------ 56
S+ DY+A+GHYA V S + + KDQTYFL+ L++ L +++F +
Sbjct: 119 SLGADYLATGHYARVDRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIGELQKSR 178
Query: 57 ---------LYPRLTIPMEGII--------------LEAETGDFLE-------KHRGFWF 86
L GI L A+ GD + +H G +
Sbjct: 179 VREIAKEADLATATKKDSTGICFIGERNFKTFLSQYLPAQPGDMMTMDGEVKGRHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ + V KD+E NI++V + +++ L +
Sbjct: 239 YTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHN-----------PLLYSDKITAT 287
Query: 146 KISQLHSVFYN-----CSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFY 192
IS +HS C+ + ++ GE A V E + + GQ FY
Sbjct: 288 NISWVHSDTMKGEEIACTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347
Query: 193 QGRRCLGSGVILEAWDD 209
G CLG G I + + D
Sbjct: 348 DGEECLGGGTIDDVYKD 364
>gi|82751221|ref|YP_416962.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus RF122]
gi|418886887|ref|ZP_13441034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus CIG1150]
gi|123547857|sp|Q2YT57.1|MNMA_STAAB RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|82656752|emb|CAI81181.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase tRNA
[Staphylococcus aureus RF122]
gi|377724389|gb|EHT48505.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus CIG1150]
Length = 372
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 109/263 (41%), Gaps = 60/263 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DYVA+GHYA + H + + KDQTYFL+ LSQ QL +++F +
Sbjct: 112 LDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIG 171
Query: 57 LYP----RLTIPMEGII-------------------------LEAETGDFLE-------K 80
R +G++ L A+ GD + K
Sbjct: 172 DIEKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGK 231
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
H G +YTIGQ LG+ +VV K++++N+++V + ++ A +
Sbjct: 232 HSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFV 291
Query: 140 SGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGL-----------AAGQF 188
+ PE + L F C+ + + +D V E+D L GQ
Sbjct: 292 N---PED-NDLDQGF-ECTAKFRYRQ---KDTKVFVKRENDHALRVTFAEPVRAITPGQA 343
Query: 189 AAFYQGRRCLGSGVILEAWDDQG 211
FYQG CLG +I + + ++G
Sbjct: 344 VVFYQGDVCLGGAIIDDVFKNEG 366
>gi|421233187|ref|ZP_15689812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2061617]
gi|421248496|ref|ZP_15704959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2082239]
gi|395603899|gb|EJG64032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2061617]
gi|395615125|gb|EJG75141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2082239]
Length = 373
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 99/257 (38%), Gaps = 51/257 (19%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192
+ +P E + + F S I H + D A V +E + + GQ FY
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVIVHVKG---DKAEVIFAEPQRAITPGQAVVFY 349
Query: 193 QGRRCLGSGVILEAWDD 209
G CLG G+I A+ D
Sbjct: 350 DGEECLGGGLIDNAYRD 366
>gi|418974119|ref|ZP_13522046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383345761|gb|EID23856.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pseudopneumoniae ATCC BAA-960]
Length = 373
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 102/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + GE V+ +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVK--GEKAEVI-FAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|307705802|ref|ZP_07642645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK597]
gi|307620634|gb|EFN99727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK597]
Length = 373
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|407456565|ref|YP_006735138.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci VS225]
gi|407457917|ref|YP_006736222.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci WS/RT/E30]
gi|405783826|gb|AFS22573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci VS225]
gi|405785548|gb|AFS24294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlamydia psittaci WS/RT/E30]
Length = 362
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 97/244 (39%), Gaps = 59/244 (24%)
Query: 10 DYVASGHYA--NVVHSSADH-KDKPSVKDQTYFLSHLSQAQLRRLIFHL----------- 55
D++A+GHY +V + + K KDQ+YFL Q L+ ++F L
Sbjct: 119 DFLATGHYCRLDVRRQGVELLRGKDPHKDQSYFLCGTRQESLKNVLFPLGDMTKTEVRAI 178
Query: 56 --------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+ +EG I++ ++ + H G +YTI
Sbjct: 179 AAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPNLEGDIIDYDSQKIVGSHEGAHYYTI 238
Query: 90 GQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
GQ + L + YVV KD+E NIV++ R + A L + PE I+
Sbjct: 239 GQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWF--VSPESIT 296
Query: 149 QLHSVFYNCSLTI------EHCE---DGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
+ CS + E CE G +D V+ + + + GQ AFY G RCLG
Sbjct: 297 R-------CSAKVRYRSEDEECEILHTGEQDKVRVRFASPVKAITPGQTIAFYDGERCLG 349
Query: 200 SGVI 203
GVI
Sbjct: 350 GGVI 353
>gi|342162923|ref|YP_004767562.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pseudopneumoniae
IS7493]
gi|383938922|ref|ZP_09992119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pseudopneumoniae SK674]
gi|421306335|ref|ZP_15756982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA60132]
gi|341932805|gb|AEL09702.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pseudopneumoniae
IS7493]
gi|383714263|gb|EID70272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pseudopneumoniae SK674]
gi|395910045|gb|EJH20919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA60132]
Length = 373
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|322388413|ref|ZP_08062016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantis ATCC 700779]
gi|419842872|ref|ZP_14366204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantis ATCC 700779]
gi|321140726|gb|EFX36228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantis ATCC 700779]
gi|385703449|gb|EIG40567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus infantis ATCC 700779]
Length = 373
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 104/264 (39%), Gaps = 65/264 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV----------KDQTYFLSHLSQAQLRR 50
+D ++ DYVA+GHYA V+ +D+ V KDQTYFLS LSQ QL++
Sbjct: 113 LDYAMTLGADYVATGHYARVL------RDEDGVVHMLRGVDNGKDQTYFLSQLSQEQLQK 166
Query: 51 LIFHL--VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTI 89
+F L + P + E GI E ++L G
Sbjct: 167 TMFPLGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMMTVD 226
Query: 90 GQH--QELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRH 129
G+ + GL+Y +VV KD+ NI++V + +Y
Sbjct: 227 GRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMST 286
Query: 130 LFHAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAA 185
A + +P E + + F + +T+ H + D A V +E + +
Sbjct: 287 SLEASQVHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITP 342
Query: 186 GQFAAFYQGRRCLGSGVILEAWDD 209
GQ FY G CLG G+I A+ D
Sbjct: 343 GQAVVFYDGEECLGGGLIDNAYRD 366
>gi|386828469|ref|ZP_10115576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Beggiatoa alba B18LD]
gi|386429353|gb|EIJ43181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Beggiatoa alba B18LD]
Length = 358
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 93/246 (37%), Gaps = 61/246 (24%)
Query: 12 VASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF--------------- 53
+A+GHY ++ K KDQ+YFL L Q+QL + +F
Sbjct: 120 IATGHYTRQRCVDGEYQLLKGLDPSKDQSYFLYLLGQSQLAQSLFPIGEIHKNQVRAYAE 179
Query: 54 --HLVLYPRLT-------------------IPMEGIILEAETGDFLEKHRGFWFYTIGQH 92
L+ + + +P + +E GD++ H G +YTIGQ
Sbjct: 180 QAGLITHDKKDSTGICFIGERPFKSFLERYLPAQRGRMETPDGDYVGDHDGVMYYTIGQR 239
Query: 93 QELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE-- 145
Q L + YVV KDI NN + V++ + R A L +SG P
Sbjct: 240 QGLNIGGRATGSGEAWYVVAKDIPNNRLIVAQGHNHPLLFRQTLQAEQLHWISGHAPTIP 299
Query: 146 -------KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
+ Q +L + CE V + + + AGQ FYQG CL
Sbjct: 300 YRCYAKTRYRQPDQACRITTLENDRCE--------VHFDQPQRAITAGQSVVFYQGEVCL 351
Query: 199 GSGVIL 204
G G+I+
Sbjct: 352 GGGIIV 357
>gi|418092987|ref|ZP_12730118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA49138]
gi|353767340|gb|EHD47874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA49138]
Length = 373
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDIPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|452124426|ref|ZP_21937010.1| tRNA-specific 2-thiouridylase MnmA [Bordetella holmesii F627]
gi|452127821|ref|ZP_21940400.1| tRNA-specific 2-thiouridylase MnmA [Bordetella holmesii H558]
gi|451923656|gb|EMD73797.1| tRNA-specific 2-thiouridylase MnmA [Bordetella holmesii F627]
gi|451926036|gb|EMD76172.1| tRNA-specific 2-thiouridylase MnmA [Bordetella holmesii H558]
Length = 370
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 99/258 (38%), Gaps = 58/258 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDK-------PSVKDQTYFLSHLSQAQLRRLIF 53
+D + +++A+GHYA V D + + KDQ+YFL L+QAQL R +F
Sbjct: 115 LDHAMAWGAEHIATGHYARVRGVDNDRGRRFQLLKAFDASKDQSYFLHRLNQAQLARTLF 174
Query: 54 --------------HLVLYP-----------------------RLTIPMEGIILEAETGD 76
H + P R G IL + G
Sbjct: 175 PLGELHKTEVRRIAHEIGLPNAAKKDSTGICFIGERPFREFLNRYLPTAPGPILTPQ-GK 233
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYR----------YVVEKDIENNIVFVSRNY-YSFD 125
L +H G FYT+GQ + LG+ + + Y KD+E N ++V + + + +
Sbjct: 234 HLGQHHGLAFYTLGQRKGLGIGGVKGQQRDDGTADAWYAARKDLEKNALYVVQGHEHPWL 293
Query: 126 KKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAA 185
R L HA + + G PE + Y + H + + + +D
Sbjct: 294 LSRRL-HAQDVSWIDGHAPEPGAYAAKTRYRQADAACHLSLEAQGFS-LSFDQDQWAATP 351
Query: 186 GQFAAFYQGRRCLGSGVI 203
GQ A Y G CLG G+I
Sbjct: 352 GQSAVLYDGDVCLGGGII 369
>gi|401683929|ref|ZP_10815814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. BS35b]
gi|400186969|gb|EJO21174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. BS35b]
Length = 373
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL + E ++ A+ D +L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLVTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|354558111|ref|ZP_08977367.1| tRNA-specific 2-thiouridylase mnmA [Desulfitobacterium
metallireducens DSM 15288]
gi|353548836|gb|EHC18280.1| tRNA-specific 2-thiouridylase mnmA [Desulfitobacterium
metallireducens DSM 15288]
Length = 375
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 96/248 (38%), Gaps = 55/248 (22%)
Query: 10 DYVASGHYANVVHSSADHK---DKP--SVKDQTYFLSHLSQAQLRRLIFHLVLYP----- 59
DY+A+GHYA ++ + + + ++P + KDQTY L L+Q QL +F L Y
Sbjct: 124 DYIATGHYAQILRNPENGRLFLNRPEDTWKDQTYMLYTLTQDQLAHTLFPLADYKKERIR 183
Query: 60 ----------------------------------RLTIPMEGIILEAETGDFLEKHRGFW 85
R T P++ + G L +H+G
Sbjct: 184 EMAEERGLLRVARKPDSQEICFIPDNDYASFVEKRATEPIKPGNFVDKQGHVLGRHQGLV 243
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YT+GQ + LG+ + +VV + E N V + + F + + + P
Sbjct: 244 HYTVGQRKGLGVTFGKPMFVVGFNTERNEVVLGEDPEVFSDALYATDLNWMAIEDLTEPL 303
Query: 146 KISQLHSVFYNCSLT------IEHCEDGGEDIAV---VQLSEDDQGLAAGQFAAFYQGRR 196
K+S + Y SL +E+ E I VQ + + GQ FY G R
Sbjct: 304 KVSA--KIRYKASLAPAMIYPVENSEQIKGAIGACVKVQFETPQRAITPGQVVVFYDGDR 361
Query: 197 CLGSGVIL 204
+G G I+
Sbjct: 362 VIGGGKII 369
>gi|227529026|ref|ZP_03959075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus vaginalis ATCC 49540]
gi|227351038|gb|EEJ41329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus vaginalis ATCC 49540]
Length = 377
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 111/265 (41%), Gaps = 65/265 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D + + DYVA+GHYA++ + + K KDQTYFLS L QL +++F L
Sbjct: 113 IDYANQLGADYVATGHYADLKRDADGRMHLMRAKDQNKDQTYFLSQLDYQQLDKVLFPLA 172
Query: 57 LYPRLTIPM---------------EGIILEAETGDFLE---------------------- 79
Y + I GI E G F E
Sbjct: 173 NYTKPEIRQIAEEAGLATAKKKDSVGICFIGEDGHFREFLSQYIPAQPGNMETVDGKVVG 232
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
+H G +YTIGQ + LGL +V+ KDI+ N+++V + Y + HL+ A
Sbjct: 233 QHMGLMYYTIGQRRGLGLGGNKKSNAPWFVIGKDIKKNVLYVGQGY----ENEHLY-ATH 287
Query: 136 LKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAV-VQLSEDDQ-----------GL 183
L+ + + ++C+ + + +D+ V V +SED+Q +
Sbjct: 288 LEASDIHWVDDAVSRYGHDFHCTAKFRYRQ---KDVGVTVHISEDEQMVTVTFDDPARAI 344
Query: 184 AAGQFAAFYQGRRCLGSGVILEAWD 208
GQ FY G CLGS +I A++
Sbjct: 345 TPGQAVVFYDGEECLGSAIIDRAYN 369
>gi|125973240|ref|YP_001037150.1| tRNA-specific 2-thiouridylase MnmA [Clostridium thermocellum ATCC
27405]
gi|256003718|ref|ZP_05428706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium thermocellum DSM 2360]
gi|281417440|ref|ZP_06248460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium thermocellum JW20]
gi|385778849|ref|YP_005688014.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Clostridium thermocellum DSM 1313]
gi|419723134|ref|ZP_14250269.1| tRNA-specific 2-thiouridylase mnmA [Clostridium thermocellum AD2]
gi|419724962|ref|ZP_14252017.1| tRNA-specific 2-thiouridylase mnmA [Clostridium thermocellum YS]
gi|205813738|sp|A3DDC8.1|MNMA_CLOTH RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|125713465|gb|ABN51957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium thermocellum ATCC 27405]
gi|255992279|gb|EEU02373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium thermocellum DSM 2360]
gi|281408842|gb|EFB39100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium thermocellum JW20]
gi|316940529|gb|ADU74563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Clostridium thermocellum DSM 1313]
gi|380771582|gb|EIC05447.1| tRNA-specific 2-thiouridylase mnmA [Clostridium thermocellum YS]
gi|380780901|gb|EIC10564.1| tRNA-specific 2-thiouridylase mnmA [Clostridium thermocellum AD2]
Length = 359
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 99/244 (40%), Gaps = 51/244 (20%)
Query: 6 SMEFDYVASGHYANVVHSSADHKD----KPSV---KDQTYFLSHLSQAQLRRLIFHLVLY 58
SM DY+A+GHYA + + D+K K SV KDQTY L +++Q QL+ ++ + +
Sbjct: 120 SMGIDYIATGHYAIITYD--DNKKRYLLKKSVTQQKDQTYALYNVTQEQLKHILMPIGNF 177
Query: 59 PRLTIPME-------------------------GIILEAET-------------GDFLEK 80
+ + + G +E T G+ L K
Sbjct: 178 TKEQVRAKAKELGLYVASKPDSQEICFVNDNDYGKFIEENTDKEIKPGYFVDTKGNILGK 237
Query: 81 HRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
HRG YT+GQ + LG+ YVV D ENN V + + K+ + + +
Sbjct: 238 HRGIIHYTVGQRKGLGIALGKPMYVVRIDAENNTVVLGDENEVYSKELTAYDLNFISIDK 297
Query: 141 GLPPEKI-SQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P ++ +++ I EDG + VV + + GQ FY G +G
Sbjct: 298 LEEPMRVKAKIRYSAKEADAVIYPLEDG--KVRVV-FDTPQRAVTPGQSVVFYDGDIVVG 354
Query: 200 SGVI 203
G+I
Sbjct: 355 GGII 358
>gi|81673663|gb|AAI09775.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos
taurus]
Length = 263
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 17/153 (11%)
Query: 64 PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYS 123
P G + E L H+G++ YT+GQ +G L + YVV+KD V V+
Sbjct: 85 PRPGRFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVDKDGAKGDVLVAPRTDH 143
Query: 124 FDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDGGEDIA 172
R L G + ++ P +K+ + H F + C LT+ +DG +
Sbjct: 144 PALYRDLLRTGRVHWIAEEPTAALVRDKMMECHFRFRHQMALVPCVLTLN--QDGTVWVT 201
Query: 173 VVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
V+ + LA GQFA FY+G CLGSG IL
Sbjct: 202 AVKAV---RALAPGQFAVFYKGDECLGSGKILR 231
>gi|339629609|ref|YP_004721252.1| tRNA-specific 2-thiouridylase MnmA [Sulfobacillus acidophilus TPY]
gi|339287398|gb|AEJ41509.1| tRNA-specific 2-thiouridylase MnmA [Sulfobacillus acidophilus TPY]
Length = 346
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 91/245 (37%), Gaps = 48/245 (19%)
Query: 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF----- 53
D S DY+A+GHY V + + ++ +V KDQ+Y L L QA L+ L+F
Sbjct: 103 DWAKSQGADYLATGHYVRVTYEAGRYRLWRAVDRQKDQSYLLYTLGQADLQHLLFPLGTL 162
Query: 54 -----------------------HLVLYP-----------RLTIPMEGIILEAETGDFLE 79
L P R G I++ E G L
Sbjct: 163 TKDQSRALAEQHGLVTAHKPDSQELCFVPNNDYHAYLREHRPEAERPGEIVDTE-GRVLG 221
Query: 80 KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
+H+G FYTIGQ + LGL RYVV D + N V V R +R + +
Sbjct: 222 EHQGVAFYTIGQRRGLGLALDEPRYVVRLDAKANRVVVGRRP---QVERESLSLRDVHYV 278
Query: 140 SGLP-PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
S P E L + YN E E AVV+ + GQ YQG +
Sbjct: 279 SDEPWTEAGRGLVKIRYNMEPAPATWEP-QEASAVVRFDSPQWAVTPGQIGVLYQGEELI 337
Query: 199 GSGVI 203
G I
Sbjct: 338 AGGKI 342
>gi|149005874|ref|ZP_01829603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP18-BS74]
gi|225855906|ref|YP_002737417.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae P1031]
gi|237649790|ref|ZP_04524042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CCRI 1974]
gi|237821488|ref|ZP_04597333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CCRI 1974M2]
gi|307126353|ref|YP_003878384.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 670-6B]
gi|410475636|ref|YP_006742395.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae gamPNI0373]
gi|418087939|ref|ZP_12725104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47033]
gi|418111467|ref|ZP_12748472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41538]
gi|418120254|ref|ZP_12757202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44194]
gi|418201450|ref|ZP_12837882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA52306]
gi|419454558|ref|ZP_13994521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae EU-NP04]
gi|419456732|ref|ZP_13996681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA02254]
gi|419465779|ref|ZP_14005665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA05248]
gi|419494478|ref|ZP_14034198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47461]
gi|419511585|ref|ZP_14051219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA05578]
gi|419515856|ref|ZP_14055474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA02506]
gi|421282370|ref|ZP_15733160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA04216]
gi|421284475|ref|ZP_15735253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA60190]
gi|421302000|ref|ZP_15752665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17484]
gi|444386660|ref|ZP_21184687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PCS125219]
gi|444390709|ref|ZP_21188624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PCS70012]
gi|444392766|ref|ZP_21190462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PCS81218]
gi|444394895|ref|ZP_21192443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0002]
gi|444396599|ref|ZP_21194086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0006]
gi|444401147|ref|ZP_21198448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0007]
gi|444402702|ref|ZP_21199857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0008]
gi|444404720|ref|ZP_21201664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0009]
gi|444406967|ref|ZP_21203634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0010]
gi|444411134|ref|ZP_21207601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0076]
gi|444413559|ref|ZP_21209874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0153]
gi|444414123|ref|ZP_21210424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0199]
gi|444417753|ref|ZP_21213769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0360]
gi|444421495|ref|ZP_21217212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0427]
gi|444423116|ref|ZP_21218742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0446]
gi|254811467|sp|C1CI29.1|MNMA_STRZP RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|147762230|gb|EDK69191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP18-BS74]
gi|225725914|gb|ACO21766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae P1031]
gi|306483415|gb|ADM90284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 670-6B]
gi|353755616|gb|EHD36219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47033]
gi|353786524|gb|EHD66935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41538]
gi|353794809|gb|EHD75161.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44194]
gi|353868926|gb|EHE48809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA52306]
gi|379533418|gb|EHY98631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA02254]
gi|379547351|gb|EHZ12488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA05248]
gi|379596842|gb|EHZ61645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47461]
gi|379630999|gb|EHZ95579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae EU-NP04]
gi|379636055|gb|EIA00613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA05578]
gi|379639859|gb|EIA04398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA02506]
gi|395884340|gb|EJG95378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA04216]
gi|395888395|gb|EJG99406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA60190]
gi|395902814|gb|EJH13746.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17484]
gi|406368581|gb|AFS42271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae gamPNI0373]
gi|444254411|gb|ELU60844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PCS125219]
gi|444257172|gb|ELU63510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PCS70012]
gi|444258864|gb|ELU65181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0002]
gi|444261830|gb|ELU68128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0006]
gi|444262883|gb|ELU69135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PCS81218]
gi|444263945|gb|ELU70071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0007]
gi|444266023|gb|ELU72000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0008]
gi|444270563|gb|ELU76314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0010]
gi|444272730|gb|ELU78417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0153]
gi|444275723|gb|ELU81338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0076]
gi|444276268|gb|ELU81838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0009]
gi|444282111|gb|ELU87393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0427]
gi|444282918|gb|ELU88142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0360]
gi|444283078|gb|ELU88288.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0199]
gi|444287526|gb|ELU92449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PNI0446]
Length = 373
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|342210545|ref|ZP_08703308.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma anatis 1340]
gi|341579426|gb|EGS29449.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma anatis 1340]
Length = 372
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 48/247 (19%)
Query: 3 AISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
A + + DY+A GHYA V + ++ K KDQTYFLS L+ QL R+I L
Sbjct: 123 AFNDLNADYIAMGHYAKVKNGHL-YRAKDVNKDQTYFLSQLTHEQLSRVIMPLSDLNKDE 181
Query: 56 -----------------------------VLYPRLTIPME-GIILEAETGDFLEKHRGFW 85
V + + IP + G ++ TG+ + H G +
Sbjct: 182 VREIAKKIGLVTANKKDSTGICFIGERNFVKFLQNYIPAQPGDTVDIITGEKVGTHDGCY 241
Query: 86 FYTIGQHQ--ELGLLYIVYRYVVEKDIENNIVFVS-RNYYSFDKKRHLFHAGSLKLLS-G 141
+YTIGQ + LG + Y YV ++ NI++V+ ++ F +L A +L L +
Sbjct: 242 YYTIGQRKGLNLGGMKEPY-YVCGHNVHKNILYVAPASHEEFLNSNNLI-ASNLNLNNHD 299
Query: 142 LPPEKISQLHSVFYN-CSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGS 200
E +S N + I+ +D D V + Q + GQ Y G +C+G
Sbjct: 300 FNYENLSAKFRYRQNDIKVRIKMLDD---DRVRVYYDQGSQAVTPGQQVVLYDGEKCIGG 356
Query: 201 GVILEAW 207
G+I E +
Sbjct: 357 GIIEEIF 363
>gi|303255169|ref|ZP_07341245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae BS455]
gi|303259175|ref|ZP_07345153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP-BS293]
gi|303263258|ref|ZP_07349181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae BS397]
gi|303265423|ref|ZP_07351323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae BS457]
gi|302597999|gb|EFL65069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae BS455]
gi|302639593|gb|EFL70050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP-BS293]
gi|302644863|gb|EFL75110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae BS457]
gi|302647031|gb|EFL77255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae BS397]
Length = 373
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|417847740|ref|ZP_12493702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK1073]
gi|418976362|ref|ZP_13524238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK575]
gi|339456574|gb|EGP69165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK1073]
gi|383351578|gb|EID29365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis SK575]
Length = 373
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|418131538|ref|ZP_12768415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA11304]
gi|418142923|ref|ZP_12779726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13494]
gi|353809006|gb|EHD89268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA11304]
gi|353810666|gb|EHD90916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13494]
Length = 363
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 103 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 162
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 163 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 222
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 223 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 282
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 283 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 338
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 339 YDGEECLGGGLIDNAYRD 356
>gi|385260463|ref|ZP_10038609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. SK140]
gi|385191307|gb|EIF38723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. SK140]
Length = 373
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVV--HSSADH--KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V H + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYARVACDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL I E + A+ D +L G G+ +
Sbjct: 173 HLEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|169834334|ref|YP_001693654.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae
Hungary19A-6]
gi|205828976|sp|B1I833.1|MNMA_STRPI RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|168996836|gb|ACA37448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae Hungary19A-6]
Length = 373
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNLLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|352103923|ref|ZP_08960163.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Halomonas sp. HAL1]
gi|350599101|gb|EHA15196.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
[Halomonas sp. HAL1]
Length = 360
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 101/267 (37%), Gaps = 71/267 (26%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV-------KDQTYFLSHLSQAQLRRLIF--------- 53
D +A+GHY + +P + KDQ+YFL + +A + R +F
Sbjct: 110 DKIATGHYVR----QGVREGRPRLLKGLDGNKDQSYFLHAVPEAAIARTLFPVGELEKPA 165
Query: 54 -------HLVLYPRLT--------------------IPMEGIILEAETGDFLEKHRGFWF 86
H ++ + +P + +E GD + KH G +
Sbjct: 166 VRALAEEHGLITAKKKDSTGICFIGERRFRDFLQQYLPAQPGTIETPDGDVIGKHMGLMY 225
Query: 87 YTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
YT+GQ Q LG+ + YV KD++ N++ + + ++ ++G
Sbjct: 226 YTLGQRQGLGIGGLANYSEEPWYVAAKDLDRNVLIAVQGKHDQLLYSDTLATEAMDWVAG 285
Query: 142 LPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQ--GLAAGQFAAFYQGR 195
PP + + + +C I DGG V+++ DD + GQ Y G
Sbjct: 286 EPPVQQGRFTAKTRYRQSDCGCEIRVLPDGG-----VEVTFDDPQWAVTPGQSLVLYDGD 340
Query: 196 RCLGSGVILEAWDDQGFPVCKKALEIA 222
CLG GVI W KKA E A
Sbjct: 341 ICLGGGVIRATW--------KKAAEAA 359
>gi|386318004|ref|YP_006014168.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|417751901|ref|ZP_12400157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus dysgalactiae subsp. equisimilis SK1249]
gi|417927541|ref|ZP_12570929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus dysgalactiae subsp. equisimilis SK1250]
gi|323128291|gb|ADX25588.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|333772349|gb|EGL49206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus dysgalactiae subsp. equisimilis SK1249]
gi|340765415|gb|EGR87941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus dysgalactiae subsp. equisimilis SK1250]
Length = 373
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVKRDEDGTVHMLRGADNGKDQTYFLSQLSQKQLQKTLFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E +L +G G+ +
Sbjct: 173 HLQKPEVRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASV 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVVFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGMIDMAYRD 366
>gi|194398405|ref|YP_002036838.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae G54]
gi|229487424|sp|B5E605.1|MNMA_STRP4 RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|194358072|gb|ACF56520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae G54]
Length = 373
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|374815464|ref|ZP_09719201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Treponema primitia ZAS-1]
Length = 352
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 94/250 (37%), Gaps = 53/250 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL 55
++ ++FD + +GHYA + AD + + KDQ+Y L ++Q QL F L
Sbjct: 105 LERTRQLDFDTIVTGHYARIERDGADGRFLLKRALDTKKDQSYVLYAMTQDQLAHTQFPL 164
Query: 56 --VLYPRLT---------------------IP----------------MEGIILEAETGD 76
+ PR+ +P EG I++ E G
Sbjct: 165 GELTKPRVREIAEAQGFVNAKKHDSQDICFVPDRDYGGFIERYTGKRSAEGNIVDEE-GR 223
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
L KHRG YT+GQ + LG+ YV K + +N V + + K A L
Sbjct: 224 VLGKHRGIIRYTVGQRRGLGIALNEPVYVKAKSVADNTVTLGPEESLYTKS---LTANEL 280
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEH---CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ 193
L+S EK L L E E GED V E + + AGQ Y
Sbjct: 281 NLISYARLEK--PLRVTVKTRYLQKEQWATAEQTGEDTLRVDFDEPQRAITAGQAVVLYD 338
Query: 194 GRRCLGSGVI 203
G +G G I
Sbjct: 339 GDVVVGGGTI 348
>gi|379007274|ref|YP_005256725.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Sulfobacillus acidophilus DSM 10332]
gi|361053536|gb|AEW05053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Sulfobacillus acidophilus DSM 10332]
Length = 352
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 91/245 (37%), Gaps = 48/245 (19%)
Query: 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF----- 53
D S DY+A+GHY V + + ++ +V KDQ+Y L L QA L+ L+F
Sbjct: 109 DWAKSQGADYLATGHYVRVTYEAGRYRLWRAVDRQKDQSYLLYTLGQADLQHLLFPLGTL 168
Query: 54 -----------------------HLVLYP-----------RLTIPMEGIILEAETGDFLE 79
L P R G I++ E G L
Sbjct: 169 TKDQSRALAEQHGLVTAHKPDSQELCFVPNNDYHAYLREHRPEAERPGEIVDTE-GRVLG 227
Query: 80 KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
+H+G FYTIGQ + LGL RYVV D + N V V R +R + +
Sbjct: 228 EHQGVAFYTIGQRRGLGLALDEPRYVVRLDAKANRVVVGRRP---QVERESLSLRDVHYV 284
Query: 140 SGLP-PEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCL 198
S P E L + YN E E AVV+ + GQ YQG +
Sbjct: 285 SDEPWTEAGRGLVKIRYNMEPAPATWEP-QEASAVVRFDSPQWAVTPGQIGVLYQGEELI 343
Query: 199 GSGVI 203
G I
Sbjct: 344 AGGKI 348
>gi|384228261|ref|YP_005619996.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
gi|345539194|gb|AEO08061.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 370
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 111/257 (43%), Gaps = 68/257 (26%)
Query: 3 AISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYP 59
AI ++ DYVA+GHYA + +++ + K KDQ+YFL L+ QL++++F + +
Sbjct: 119 AIHVLKADYVATGHYARIKNNNGKYILLKGIDQNKDQSYFLYTLNHIQLKKILFPIGDWT 178
Query: 60 RLTI------------------------PMEGIILE-----------AETGDFLEKHRGF 84
+ TI P IL +G + KH G
Sbjct: 179 KNTIRNFAKKINIRISKKKDSTGICFIGPKNLKILNFYITEKIGDIVTVSGKIIGKHNGI 238
Query: 85 WFYTIGQHQELGL-----LYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
++YTIGQ + LG+ Y + YVV+KDI+ N + V++ A ++ L+
Sbjct: 239 FYYTIGQRKGLGIGGIKEEYNIPWYVVKKDIKKNQLIVAQG------------ASNIYLM 286
Query: 140 S-GLPPEKISQLHSVF----YNCSLTIEHCE-DGGEDIAVVQ-------LSEDDQGLAAG 186
S GL + I+ +++ + +C + I + + D +I ++ + G
Sbjct: 287 SVGLIAKNINWINNDYISYPLSCKIKIRYRQIDISCNIECIKNKRLKILFDSPVIAVTPG 346
Query: 187 QFAAFYQGRRCLGSGVI 203
Q Y C+G G+I
Sbjct: 347 QSVVLYLLEVCIGGGII 363
>gi|148987860|ref|ZP_01819323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP6-BS73]
gi|148992708|ref|ZP_01822351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP9-BS68]
gi|149017799|ref|ZP_01834258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP23-BS72]
gi|168489391|ref|ZP_02713590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP195]
gi|168493828|ref|ZP_02717971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CDC3059-06]
gi|387625629|ref|YP_006061801.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae INV104]
gi|417675908|ref|ZP_12325321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17545]
gi|417678106|ref|ZP_12327507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17570]
gi|417693060|ref|ZP_12342249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47901]
gi|418073021|ref|ZP_12710284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA11184]
gi|418077684|ref|ZP_12714908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 4027-06]
gi|418079843|ref|ZP_12717059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 6735-05]
gi|418088548|ref|ZP_12725709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA43265]
gi|418097557|ref|ZP_12734659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 6901-05]
gi|418101840|ref|ZP_12738917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae NP070]
gi|418104211|ref|ZP_12741271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44500]
gi|418113735|ref|ZP_12750728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 5787-06]
gi|418115903|ref|ZP_12752880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 6963-05]
gi|418124755|ref|ZP_12761678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44511]
gi|418133867|ref|ZP_12770727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA11426]
gi|418154179|ref|ZP_12790910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA16242]
gi|418172545|ref|ZP_12809159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41277]
gi|418190601|ref|ZP_12827106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47388]
gi|418213337|ref|ZP_12840072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA54644]
gi|418215619|ref|ZP_12842345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae Netherlands15B-37]
gi|418224579|ref|ZP_12851210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae NP112]
gi|418233355|ref|ZP_12859936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA08780]
gi|419430586|ref|ZP_13970732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae EU-NP05]
gi|419432785|ref|ZP_13972907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA40183]
gi|419439385|ref|ZP_13979442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA40410]
gi|419445896|ref|ZP_13985902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 7879-04]
gi|419463548|ref|ZP_14003444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA04175]
gi|419474520|ref|ZP_14014362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA14688]
gi|419483403|ref|ZP_14023179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA43257]
gi|419485618|ref|ZP_14025385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44128]
gi|419496576|ref|ZP_14036288.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47522]
gi|419507239|ref|ZP_14046895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA49542]
gi|419533585|ref|ZP_14073093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17457]
gi|421208018|ref|ZP_15665043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070005]
gi|421219382|ref|ZP_15676244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070425]
gi|421221696|ref|ZP_15678497.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070531]
gi|421224009|ref|ZP_15680755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070768]
gi|421277939|ref|ZP_15728751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17301]
gi|421280183|ref|ZP_15730982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA04672]
gi|421293233|ref|ZP_15743960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA56113]
gi|421299859|ref|ZP_15750531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA19998]
gi|421308610|ref|ZP_15759241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA62681]
gi|444383309|ref|ZP_21181501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PCS8106]
gi|444384365|ref|ZP_21182461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PCS8203]
gi|147926324|gb|EDK77397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP6-BS73]
gi|147928434|gb|EDK79449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP9-BS68]
gi|147931363|gb|EDK82341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP23-BS72]
gi|183572139|gb|EDT92667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae SP195]
gi|183576137|gb|EDT96665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae CDC3059-06]
gi|301793411|emb|CBW35778.1| putative tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae INV104]
gi|332075800|gb|EGI86267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17570]
gi|332076573|gb|EGI87035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17545]
gi|332204143|gb|EGJ18208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47901]
gi|353748706|gb|EHD29357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 4027-06]
gi|353752559|gb|EHD33184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA11184]
gi|353754162|gb|EHD34775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 6735-05]
gi|353764289|gb|EHD44838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA43265]
gi|353771713|gb|EHD52220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 6901-05]
gi|353777552|gb|EHD58024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae NP070]
gi|353778645|gb|EHD59111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44500]
gi|353788399|gb|EHD68796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 5787-06]
gi|353791541|gb|EHD71915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 6963-05]
gi|353801611|gb|EHD81913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44511]
gi|353822471|gb|EHE02646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA16242]
gi|353839244|gb|EHE19318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA41277]
gi|353858200|gb|EHE38160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47388]
gi|353870620|gb|EHE50491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA54644]
gi|353874525|gb|EHE54380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae Netherlands15B-37]
gi|353883776|gb|EHE63581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae NP112]
gi|353889939|gb|EHE69706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA08780]
gi|353903854|gb|EHE79368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA11426]
gi|379540827|gb|EHZ05998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA04175]
gi|379562027|gb|EHZ27041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA14688]
gi|379568547|gb|EHZ33526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17457]
gi|379578907|gb|EHZ43815.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA40183]
gi|379581870|gb|EHZ46753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA40410]
gi|379582914|gb|EHZ47791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA43257]
gi|379588527|gb|EHZ53367.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA44128]
gi|379602701|gb|EHZ67471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47522]
gi|379613374|gb|EHZ78086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA49542]
gi|379615354|gb|EHZ80060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 7879-04]
gi|379631830|gb|EHZ96406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae EU-NP05]
gi|395576488|gb|EJG37042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070005]
gi|395590787|gb|EJG51087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070531]
gi|395591182|gb|EJG51478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070425]
gi|395591345|gb|EJG51640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2070768]
gi|395883058|gb|EJG94101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA17301]
gi|395883540|gb|EJG94582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA04672]
gi|395896287|gb|EJH07254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA56113]
gi|395900956|gb|EJH11893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA19998]
gi|395912755|gb|EJH23612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA62681]
gi|444249844|gb|ELU56330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PCS8106]
gi|444253019|gb|ELU59479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae PCS8203]
Length = 373
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|421205547|ref|ZP_15662615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2090008]
gi|421228815|ref|ZP_15685494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2061376]
gi|421290930|ref|ZP_15741674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA56348]
gi|421310836|ref|ZP_15761449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA58981]
gi|395578154|gb|EJG38679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2090008]
gi|395599004|gb|EJG59202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae 2061376]
gi|395896730|gb|EJH07695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA56348]
gi|395913796|gb|EJH24645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA58981]
Length = 373
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|418316687|ref|ZP_12928122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus 21340]
gi|365240650|gb|EHM81417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus 21340]
Length = 372
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 60/263 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DYVA+GHYA + H + + KDQTYFL+ LSQ QL +++F +
Sbjct: 112 LDHAMNLGADYVATGHYACIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIG 171
Query: 57 LYPRLTIPM----EGII-------------------------LEAETGDFLE-------K 80
++ + +G++ L A+ GD + K
Sbjct: 172 DIEKIEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGK 231
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
H G +YTIGQ LG+ +VV K++++N+++V + ++ A +
Sbjct: 232 HSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFV 291
Query: 140 SGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGL-----------AAGQF 188
+ PE + L F C+ + + +D V E+D L GQ
Sbjct: 292 N---PED-NDLDQGF-ECTAKFRYRQ---KDTKVFVKRENDHALRVTFAEPVRAITPGQA 343
Query: 189 AAFYQGRRCLGSGVILEAWDDQG 211
FYQG CLG I + + ++G
Sbjct: 344 VVFYQGDVCLGGATIDDVFKNEG 366
>gi|414157670|ref|ZP_11413966.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. F0441]
gi|410871588|gb|EKS19535.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. F0441]
Length = 373
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|333896666|ref|YP_004470540.1| tRNA-specific 2-thiouridylase mnmA [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111931|gb|AEF16868.1| tRNA-specific 2-thiouridylase mnmA [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 369
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 103/251 (41%), Gaps = 58/251 (23%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---HLVLYPRLTI 63
DY+A+GHYA + H +K V KDQTYFL L Q QL + +F HL I
Sbjct: 123 DYIATGHYARIEHIDGHYKMLKGVDKNKDQTYFLCELGQKQLSKTMFPIGHLDKSEVREI 182
Query: 64 PME------------GIILEAE---------------------TGDFLEKHRGFWFYTIG 90
+ GI E +G L +H G FYT+G
Sbjct: 183 ARKAGLKTADKKDSTGICFIGERKFKEFLNQFLPAKPGEIRDLSGRVLGRHDGLMFYTLG 242
Query: 91 QHQELGLLYIVYR---YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
Q + +G+ + +VV+KD+ENNI++V++ DK L+ G L +
Sbjct: 243 QRRGIGIGGVGTGEPWFVVDKDVENNILYVAQG----DKNPALYSYG---LFTKNVNWID 295
Query: 148 SQLHSVFYNCSLTIEHCEDGGEDIAV--------VQLSEDDQGLAAGQFAAFYQGRRCLG 199
++ C + + +D+ V V + + + GQF FY G CLG
Sbjct: 296 GDMNFDELRCKAKFRYRQP-DQDVMVFKKDNGYLVVFDKPQRAVTPGQFVVFYDGEYCLG 354
Query: 200 SGVILEAWDDQ 210
GVI + D+
Sbjct: 355 GGVIETIYKDE 365
>gi|307707803|ref|ZP_07644280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis NCTC 12261]
gi|307616063|gb|EFN95259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis NCTC 12261]
Length = 373
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 107/259 (41%), Gaps = 55/259 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLT----------------------------------IPME-GIILEAETGDFLE 79
+ P + +P + G ++ ++ D E
Sbjct: 173 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDSRDMGE 232
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAG 134
H G +YTIGQ LG+ +VV KD+ NI++V + +Y A
Sbjct: 233 -HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEAS 291
Query: 135 SLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190
+ +P E + + F + +T+ H + D A V +E + + GQ
Sbjct: 292 QVHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVV 347
Query: 191 FYQGRRCLGSGVILEAWDD 209
FY G CLG G+I A+ D
Sbjct: 348 FYDGEECLGGGLIDNAYRD 366
>gi|410495953|ref|YP_006905799.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
subsp. equisimilis AC-2713]
gi|410441113|emb|CCI63741.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
subsp. equisimilis AC-2713]
Length = 373
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 99/255 (38%), Gaps = 47/255 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVKRDEDGTVHMLRGADNGKDQTYFLSQLSQKQLQKTLFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E +L +G G+ +
Sbjct: 173 HLQKPEVRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASV 292
Query: 136 LKLLSGLPPEKISQLHSVF-YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
+ +P E + + F Y S + G+ VV +E + + GQ FY G
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQSDSKVTVHVKGDKAEVV-FAEPQRAITPGQAVVFYDG 351
Query: 195 RRCLGSGVILEAWDD 209
CLG G+I A+ D
Sbjct: 352 EECLGGGMIDMAYRD 366
>gi|322375113|ref|ZP_08049627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. C300]
gi|321280613|gb|EFX57652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. C300]
Length = 415
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 99/258 (38%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 155 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 214
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 215 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 274
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 275 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 334
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ D E V +E + + GQ F
Sbjct: 335 VHFTRDMPEEFTLECTAKFRYRQPDSKVTVHVKGDKAE----VIFAEPQRAITPGQAVVF 390
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 391 YDGEECLGGGLIDNAYRD 408
>gi|78186206|ref|YP_374249.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium luteolum DSM 273]
gi|123583498|sp|Q3B625.1|MNMA_PELLD RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|78166108|gb|ABB23206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Chlorobium luteolum DSM 273]
Length = 367
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 89/249 (35%), Gaps = 46/249 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHL-- 55
++ + + D VA+GHYA H+ + KDQ+YFL L+Q +L R I L
Sbjct: 109 LEGAAQLGADMVATGHYARTAFIDGRHRLFAGLDRKKDQSYFLWMLAQEELSRTILPLGG 168
Query: 56 ---------------------------------------VLYPRLTIPMEGIILEAETGD 76
P L +EG + +G
Sbjct: 169 LTKPEVRDLARSFGLTAAEKKESQEICFVPDDDYGSYLESAVPGLHRRVEGGEILDPSGQ 228
Query: 77 FLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
+ H+G+ FYTIGQ + LG YV D N+V F + H +
Sbjct: 229 VIGHHKGYPFYTIGQRRGLGTATGEPLYVTAIDPIGNLVHTGPKSALFSTSVEVSHLNWI 288
Query: 137 KLLSGLPP-EKISQLHSVFYNCSLTIEHCEDGGEDI-AVVQLSEDDQGLAAGQFAAFYQG 194
+ P E +++ + TI G + A + E L GQ A FY+G
Sbjct: 289 GIDPPFAPMEATAKIRYRDHASPCTIIPLGPGPTGVTARIMFKEPKSALTPGQAAVFYRG 348
Query: 195 RRCLGSGVI 203
LG G+I
Sbjct: 349 EEVLGGGII 357
>gi|419468064|ref|ZP_14007937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA06083]
gi|379548334|gb|EHZ13466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA06083]
Length = 363
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 103 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 162
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 163 HLEKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 222
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 223 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 282
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 283 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 338
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 339 YDGEECLGGGLIDNAYRD 356
>gi|390935565|ref|YP_006393070.1| tRNA-specific 2-thiouridylase mnmA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389571066|gb|AFK87471.1| tRNA-specific 2-thiouridylase mnmA [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 369
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 104/255 (40%), Gaps = 66/255 (25%)
Query: 10 DYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLTI--- 63
DY+A+GHYA + H+ ++ V KDQTYFL L Q QL + +F + +L +
Sbjct: 123 DYIATGHYARIEHTDGHYRMLKGVDKNKDQTYFLCELGQKQLSKTMFPIGHLDKLEVREI 182
Query: 64 ------------PMEGIILEAE---------------------TGDFLEKHRGFWFYTIG 90
GI E +G L +H G FYT+G
Sbjct: 183 ARKAGLKTADKKDSTGICFIGERKFKEFLNQFLPAKPGEIRDLSGRVLGRHDGLMFYTLG 242
Query: 91 QHQELGLLYIVYR---YVVEKDIENNIVFVSR--------NYYSFDKKRHLFHA----GS 135
Q + +G+ + +VV+KD+ENN+++V++ +Y F K +
Sbjct: 243 QRRGIGIGGVGTGEPWFVVDKDVENNVLYVAQGEKNPALYSYGLFTKDVNWIDGDMDFDE 302
Query: 136 LKLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
LK + + Q VF +D G + +L + + GQF FY G
Sbjct: 303 LKCKAKFRYRQPDQDVMVFK---------KDNGYLVVFDKLQ---RAVTPGQFVVFYDGE 350
Query: 196 RCLGSGVILEAWDDQ 210
CLG GVI + D+
Sbjct: 351 YCLGGGVIETIYKDK 365
>gi|418597998|ref|ZP_13161512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus 21343]
gi|374400306|gb|EHQ71424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Staphylococcus aureus subsp. aureus 21343]
Length = 372
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 108/263 (41%), Gaps = 60/263 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DYVA+GHYA + H + + KDQTYFL+ LSQ QL +++F +
Sbjct: 112 LDHAMNLGADYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIG 171
Query: 57 LYP----RLTIPMEGII-------------------------LEAETGDFLE-------K 80
R +G++ L A+ GD + K
Sbjct: 172 DIEKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLPAQPGDMITLDGKKMGK 231
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLL 139
H G +YTIGQ LG+ +VV K++++N+++V + ++ A +
Sbjct: 232 HSGLMYYTIGQRHGLGIGGDGNPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFV 291
Query: 140 SGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGL-----------AAGQF 188
+ PE + L F C+ + + +D V E+D L GQ
Sbjct: 292 N---PED-NDLDQGF-ECTAKFRYRQ---KDTKVFVKRENDHALRVTFAEPVRAITPGQA 343
Query: 189 AAFYQGRRCLGSGVILEAWDDQG 211
FYQG CLG I + + ++G
Sbjct: 344 VVFYQGDVCLGGATIDDVFKNEG 366
>gi|270291927|ref|ZP_06198142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. M143]
gi|270279455|gb|EFA25297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. M143]
Length = 383
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 123 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDTGKDQTYFLSQLSQEQLQKTMFPLG 182
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL + E + A+ D +L G G+ +
Sbjct: 183 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLPAQPGRMMTMDGRDMGE 242
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQ 302
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 303 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 358
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 359 YDGEECLGGGLIDNAYRD 376
>gi|419492294|ref|ZP_14032022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47210]
gi|379595991|gb|EHZ60796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47210]
Length = 373
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFTEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|306828717|ref|ZP_07461909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis ATCC 6249]
gi|418129324|ref|ZP_12766208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA07643]
gi|419782043|ref|ZP_14307854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus oralis SK610]
gi|304428895|gb|EFM31983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus mitis ATCC 6249]
gi|353802616|gb|EHD82908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA07643]
gi|383183684|gb|EIC76219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus oralis SK610]
Length = 373
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTRDMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|397670401|ref|YP_006511936.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
[Propionibacterium propionicum F0230a]
gi|395143186|gb|AFN47293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Propionibacterium propionicum F0230a]
Length = 357
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 98/255 (38%), Gaps = 74/255 (29%)
Query: 6 SMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
++ FD VA+GHYA VV + ++ H+ KDQ+Y L L+Q QLRR +F L P+
Sbjct: 116 ALGFDAVATGHYARVVDNGSELELHRAADPDKDQSYVLGVLNQDQLRRSLFPLADTPKPQ 175
Query: 63 IPME-------------------------------------GIILEAETGDFLEKHRGFW 85
+ E G I++ +G L +HRG
Sbjct: 176 VRAEAHSLGLRVADKPDSYDICFIPDGDTQGYLRAHLGETPGPIVD-RSGTELGRHRGHH 234
Query: 86 FYTIGQHQELGLLYIV----YRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
+TIGQ + L L RYV+ + +N V V + L+G
Sbjct: 235 GFTIGQRKGLDLRVPAPDGNPRYVLRIEPASNRVVVGPGESLL-----------VTNLAG 283
Query: 142 LPPEKIS-------------QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQF 188
+ P + H + ++T G+D V+L E +G+A GQ
Sbjct: 284 IRPTWTQHRVPGSWRGQVQYRAHGAALSATITTT-----GDDQVRVELDEPTRGVAPGQS 338
Query: 189 AAFYQGRRCLGSGVI 203
F+ R +GS I
Sbjct: 339 MVFFDATRVVGSATI 353
>gi|385261720|ref|ZP_10039837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. SK643]
gi|385192442|gb|EIF39847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus sp. SK643]
Length = 373
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIF--- 53
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 54 HLVLYPRLTIPMEGIILEAETGD------------------FLEKHRGFWFYTIGQH--Q 93
HL + E + A+ D +L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVICAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
>gi|332686364|ref|YP_004456138.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Melissococcus plutonius ATCC 35311]
gi|332370373|dbj|BAK21329.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Melissococcus plutonius ATCC 35311]
Length = 373
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 99/248 (39%), Gaps = 50/248 (20%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI-- 63
DY+A+GHYA + + + + + KDQTYFLS LSQ QL + +F L + +
Sbjct: 121 DYIATGHYAQIERTEDGNVRLLRGIDTNKDQTYFLSQLSQEQLSKAMFPLGGMEKTQVRE 180
Query: 64 ----------------------------------PMEGIILEAETGDFLEKHRGFWFYTI 89
P + + ETG+ H G +YTI
Sbjct: 181 IAAKANLATANKKDSTGVCFIGEKNFKKFLSEYLPAKKGKMVTETGEIKGIHDGLMYYTI 240
Query: 90 GQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
GQ Q LG+ +V+ KD+ N ++V + ++ A +++
Sbjct: 241 GQRQGLGIGGGGASQEPWFVIGKDLTTNTLYVGQGFHHPLLYASQLDASNIQFTKNSSMP 300
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K Q + F + ++T+ ED A V SE + + GQ FY G CLG G
Sbjct: 301 KEFQCTAKFRYRQQDTAVTVRLGEDA--TCAKVIFSEPVRAITPGQAVVFYDGMECLGGG 358
Query: 202 VILEAWDD 209
I A+ D
Sbjct: 359 TIDRAYQD 366
>gi|81428407|ref|YP_395407.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus sakei subsp. sakei 23K]
gi|123564381|sp|Q38XI3.1|MNMA_LACSS RecName: Full=tRNA-specific 2-thiouridylase MnmA
gi|78610049|emb|CAI55098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Lactobacillus sakei subsp. sakei 23K]
Length = 379
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 107/261 (40%), Gaps = 63/261 (24%)
Query: 1 MDAISSMEFDYVASGHYANVVH--SSADH--KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ D++A GHYA + + H + S KDQTYFLS LSQ QL++ +F +
Sbjct: 113 LDYAMELDADFIAMGHYAQIERDENGIAHMLRGGDSNKDQTYFLSALSQDQLQKSMFPIG 172
Query: 56 ----------------------------VLYPRLTIPMEGIILEAETG-----DFLEK-- 80
+ R G L A+ G D LEK
Sbjct: 173 HMQKSEVRRLAEEAGLATAKKKDSTGICFIGERNFKQFLGEYLPAQPGKMMTVDGLEKGT 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ LG+ +VV KD+E NI++V + Y++ L +A L
Sbjct: 233 HDGLMYYTIGQRSGLGIGGGGESNDPWFVVGKDLEQNILYVGQGYHN-----ELLYADQL 287
Query: 137 KL--LSGLPPEKISQLHSVFYNCSLTIEH-CEDGG-------EDIAVVQLSEDDQGLAAG 186
++ + P H ++C+ + +D G E A V + + G
Sbjct: 288 DASKMTWITPVD----HGTDFHCTAKFRYRQQDVGITVHMTSETTATVVFDAPVRAITPG 343
Query: 187 QFAAFYQGRRCLGSGVILEAW 207
Q FY G CLG G I A+
Sbjct: 344 QAVVFYDGAECLGGGTIDVAY 364
>gi|406892358|gb|EKD37729.1| hypothetical protein ACD_75C01019G0001, partial [uncultured
bacterium]
Length = 164
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 18/152 (11%)
Query: 66 EGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFD 125
EG IL + G L HRG + YTIGQ + LG+ YV D++ N V V N F
Sbjct: 22 EGPIL-STAGQLLGTHRGLFRYTIGQRKGLGIASSAPLYVTCLDVKRNAVIVGSNEELF- 79
Query: 126 KKRHLFHAGSLKLLSGLPPEKISQLHSVFYNCSLTIEH--------CEDGGEDIAVVQLS 177
R+ L L G PP+ Q Y + H + +
Sbjct: 80 --RNRIDVAELHWL-GTPPDTTRQ-----YTVRIRYSHPGSKATLALHENANACGTIVFD 131
Query: 178 EDDQGLAAGQFAAFYQGRRCLGSGVILEAWDD 209
E + + GQFA Y G LGSGVI+ A +
Sbjct: 132 EPQRAITPGQFAVIYDGTELLGSGVIVSAVSE 163
>gi|294140592|ref|YP_003556570.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Shewanella violacea DSS12]
gi|293327061|dbj|BAJ01792.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
[Shewanella violacea DSS12]
Length = 376
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 97/247 (39%), Gaps = 51/247 (20%)
Query: 7 MEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---------- 53
++ D++A GHY + + + KDQ+YFL LS Q+ R +F
Sbjct: 125 LDADFIAMGHYVRRSDETGQSRMLRGIDGNKDQSYFLYTLSHEQIARSLFPVGELEKSEV 184
Query: 54 --------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
+ +P + +E G+ + KH+G ++
Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLPAQPGDIETAEGEVIGKHQGLMYH 244
Query: 88 TIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
T+GQ + LG+ + YVV+K+++ N++ V + F+A L +
Sbjct: 245 TLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGTHPRLMSLGFYADQLHWVDRK 304
Query: 143 PP---EKIS---QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
P KI+ + C+L +E D GED V E + GQ A FY G
Sbjct: 305 GPVDEAKITVKTRYRQRDVACTLFLE-TNDKGEDTIRVLFDEPVAAVTPGQSAVFYSGEL 363
Query: 197 CLGSGVI 203
CLG G+I
Sbjct: 364 CLGGGII 370
>gi|429204399|ref|ZP_19195688.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus saerimneri 30a]
gi|428147340|gb|EKW99567.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus saerimneri 30a]
Length = 379
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 105/264 (39%), Gaps = 58/264 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF-- 53
+D ++ DY+A GHYA V AD + KDQTYFLS LSQ QL+R++F
Sbjct: 113 LDYAMKLDADYIAMGHYAQV-RRDADGTVHMLRGGDPNKDQTYFLSQLSQDQLQRVMFPI 171
Query: 54 ---HLVLYPRLT-------------------------------IPMEGIILEAETGDFLE 79
H R+ +P + ++ G+
Sbjct: 172 GGMHKDEVRRIAEEAGLATAKKKDSTGICFIGERNFNKFLGEFLPAQPGKMKTLDGEIKG 231
Query: 80 KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G YTIGQ + LG+ +VV KD++ N + V + Y + + A +
Sbjct: 232 DHFGLMNYTIGQRRGLGIGGNGQSNEPWFVVGKDLKTNTLLVGQGYENDYLYANYLEASN 291
Query: 136 LKLLSGLPPEKISQLHSVF------YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
L ++ + ++ + H + +T+ +D + V E + + GQ
Sbjct: 292 LSFVAPI-ADRGQEFHCTAKFRYRQKDVGVTVRFNDDRTQ--MTVYFDEPARAITPGQEV 348
Query: 190 AFYQGRRCLGSGVILEAW---DDQ 210
Y G CLGSG I A+ DDQ
Sbjct: 349 VLYDGDECLGSGTIDHAYKLVDDQ 372
>gi|251783539|ref|YP_002997844.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|408402600|ref|YP_006860564.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Streptococcus dysgalactiae subsp. equisimilis RE378]
gi|242392171|dbj|BAH82630.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus dysgalactiae subsp. equisimilis GGS_124]
gi|407968829|dbj|BAM62067.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
[Streptococcus dysgalactiae subsp. equisimilis RE378]
Length = 379
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 119 LDYAMTLGADYVATGHYAQVKRDEDGTVHMLRGADNGKDQTYFLSQLSQKQLQKTLFPLG 178
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E +L +G G+ +
Sbjct: 179 HLQKPEVRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLPAQKGRMMTVDGRDMGE 238
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 239 HAGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASV 298
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 299 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVVFAEPQRAITPGQAVVF 354
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 355 YDGEECLGGGMIDMAYRD 372
>gi|392330283|ref|ZP_10274899.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus canis FSL Z3-227]
gi|391420155|gb|EIQ82966.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus canis FSL Z3-227]
Length = 373
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 99/258 (38%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E +L +G G+ +
Sbjct: 173 HLQKPEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLPAQKGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASV 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ D E V +E + + GQ F
Sbjct: 293 IHFTRDMPEEFTLECTAKFRYRQPDSQVTVHVRGDKAE----VVFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGMIDIAYKD 366
>gi|449928747|ref|ZP_21801285.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 3SN1]
gi|449165052|gb|EMB68081.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans 3SN1]
Length = 373
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 104/261 (39%), Gaps = 65/261 (24%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL--VLYPRLTI 63
DYVA+GHYA V + + + KDQTYFLS LSQ QL++++F L + PR+
Sbjct: 122 DYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLQKPRVRE 181
Query: 64 PME-------------GIILEAET------GDFLEKHRGFWFYT----IGQHQELGLLYI 100
E GI E +L +G +G+H GL+Y
Sbjct: 182 IAEKAGLATAKKKDSTGICFIGEKNFKEFLSSYLPAQKGRMMTIDGRDMGEHN--GLMYY 239
Query: 101 VYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
+VV KD+ NI++V + +Y + A + +
Sbjct: 240 TIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSNSLTASQVHFTQNM 299
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGE-------DIAVVQLSEDDQGLAAGQFAAFYQGR 195
P +K + NC+ + + + D A V E + + GQ FY G
Sbjct: 300 P-DKFT------LNCTAKFRYRQPDSKVTVKVNGDKAEVIFDELQRAITPGQAVVFYNGD 352
Query: 196 RCLGSGVILEAWDDQGFPVCK 216
CLG G+I A+ ++ +C+
Sbjct: 353 ECLGGGLIDNAYQEE--KICQ 371
>gi|418199293|ref|ZP_12835742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47976]
gi|419522669|ref|ZP_14062252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13723]
gi|419531430|ref|ZP_14070950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47794]
gi|421274107|ref|ZP_15724941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA52612]
gi|353866881|gb|EHE46777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47976]
gi|379560290|gb|EHZ25316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA13723]
gi|379609756|gb|EHZ74493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA47794]
gi|395875942|gb|EJG87019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Streptococcus pneumoniae GA52612]
Length = 373
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DYVA+GHYA V + + KDQTYFLS LSQ QL++ +F L
Sbjct: 113 LDYAMTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172
Query: 56 -VLYPRLTIPME-------------GIILEAET------GDFLEKHRGFWFYTIGQH--Q 93
+ P + E GI E ++L G G+ +
Sbjct: 173 HLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLPAQPGRMMTVDGRDMGE 232
Query: 94 ELGLLYIVYR------------------YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
GL+Y +VV KD+ NI++V + +Y A
Sbjct: 233 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTNLEASQ 292
Query: 136 LKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF 191
+ +P E + + F + +T+ H + D A V +E + + GQ F
Sbjct: 293 VHFTREMPEEFTLECTAKFRYRQPDSKVTV-HVKG---DKAEVIFAEPQRAITPGQAVVF 348
Query: 192 YQGRRCLGSGVILEAWDD 209
Y G CLG G+I A+ D
Sbjct: 349 YDGEECLGGGLIDNAYRD 366
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,831,570,981
Number of Sequences: 23463169
Number of extensions: 203591726
Number of successful extensions: 450931
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 2697
Number of HSP's that attempted gapping in prelim test: 441776
Number of HSP's gapped (non-prelim): 7113
length of query: 300
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 159
effective length of database: 9,050,888,538
effective search space: 1439091277542
effective search space used: 1439091277542
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)