BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048403
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0SMH1|MNMA_BORAP tRNA-specific 2-thiouridylase MnmA OS=Borrelia afzelii (strain PKo)
GN=mnmA PE=3 SV=1
Length = 355
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 117/253 (46%), Gaps = 65/253 (25%)
Query: 8 EFDYVASGHYANVVHSSADHK-----DKPSVKDQTYFLSHLSQAQLRRLIFHL------- 55
++D V +GHYA + + D K K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKI--QTKDKKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173
Query: 56 --VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFW 85
+ + +P +G I+E ETG + H G+W
Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGTHNGYW 233
Query: 86 FYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS--RNYYSFDKKRHLFHAGSLKLLSGLP 143
F+T+GQ + + L + +V+EKD+E NI+++S NY K++ L H + ++G P
Sbjct: 234 FFTVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYSKQAKRKFLVH--EIHWINGTP 290
Query: 144 PEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ F N + I H E +++ + L++ D G++ GQFA FY+
Sbjct: 291 SD--------FENFKIKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKNT 342
Query: 196 RCLGSGVILEAWD 208
CLG I + +
Sbjct: 343 ECLGGAKIFKVME 355
>sp|A1R0A7|MNMA_BORT9 tRNA-specific 2-thiouridylase MnmA OS=Borrelia turicatae (strain
91E135) GN=mnmA PE=3 SV=1
Length = 354
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 115/244 (47%), Gaps = 54/244 (22%)
Query: 9 FDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
+D + +GHYA + + DH + K +KDQ+YFLSHLS+ Q+ +L F L
Sbjct: 117 YDLIVTGHYAKI-ENKNDHYILKQAKDKIKDQSYFLSHLSRKQISKLHFPLGDLLKTEIR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ ++ +P ++G I+E ETG L H G+WF+
Sbjct: 176 QIAQKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSR--NYYSFDKKRHLFHAGSL---KLLSGL 142
TIGQ + + L + + +V EKDI+NNI+++S NY K++ L H + L +G
Sbjct: 236 TIGQRKGIKLSHGPW-FVTEKDIQNNIIYISNSINYLKQGKQQFLVHKTNWINKPLNNGD 294
Query: 143 PPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGV 202
KI IE ++ DI V L E D G++ GQF FYQ CLG
Sbjct: 295 LSAKIRHGEK---KIKCKIEMLKN---DIIKVDLEEKDYGISPGQFCIFYQEDECLGGAK 348
Query: 203 ILEA 206
IL+
Sbjct: 349 ILKT 352
>sp|O51625|MNMA_BORBU tRNA-specific 2-thiouridylase MnmA OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=mnmA PE=3
SV=1
Length = 355
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>sp|B7J2N7|MNMA_BORBZ tRNA-specific 2-thiouridylase MnmA OS=Borrelia burgdorferi (strain
ZS7) GN=mnmA PE=3 SV=1
Length = 355
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQISKLYFPLGTLLKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKNINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIIEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + + F + ++ P
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINDTPTN-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ DQG++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>sp|B2S125|MNMA_BORHD tRNA-specific 2-thiouridylase MnmA OS=Borrelia hermsii (strain DAH)
GN=mnmA PE=3 SV=2
Length = 354
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 110/238 (46%), Gaps = 42/238 (17%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL---------V 56
+D + +GHYA + + + + + K +KDQ+YFLSHLS+ Q+ +L F L
Sbjct: 117 YDLIVTGHYAKIENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTEIRQ 176
Query: 57 LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFYT 88
+ ++ +P ++G I+E ETG L H G+WF+T
Sbjct: 177 IAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGELKGNIIEQETGKILGTHNGYWFFT 236
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + + L + + +V EKDI+NNI+++S + + +H F ++ P I
Sbjct: 237 IGQRKGIKLSHGPW-FVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWINK-PVNNID 294
Query: 149 QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206
+ + E DI V L E D G++ GQF FYQ CLG IL+
Sbjct: 295 LSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQEDECLGGAQILQT 352
>sp|Q660I8|MNMA_BORGA tRNA-specific 2-thiouridylase MnmA OS=Borrelia garinii (strain PBi)
GN=mnmA PE=3 SV=1
Length = 355
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 111/246 (45%), Gaps = 57/246 (23%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D V +GHYA + + K +KDQ+YFLSHLSQ Q+ +L F L
Sbjct: 116 QYDLVVTGHYARIQIKEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSEVR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P +G I+E ETG + H G+WF+
Sbjct: 176 QIAKSINLPNKDRKDSQGICFLGKIKYNEFIKYHLGEKKGNIVEKETGKIIGIHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
T+GQ + + L + +V+EKD+E NI+++S N + + F + ++G+P +
Sbjct: 236 TVGQRRGIKLSNGPW-FVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWINGMPSD-- 292
Query: 148 SQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
F N + I H E ++ + L++ D G++ GQFA FY+ CLG
Sbjct: 293 ------FENFKIKIRHGEKKYSCKLRLITNNLIEIFLNKKDHGISPGQFAIFYKNTECLG 346
Query: 200 SGVILE 205
I +
Sbjct: 347 GAKIFK 352
>sp|B5RQ24|MNMA_BORRA tRNA-specific 2-thiouridylase MnmA OS=Borrelia recurrentis (strain
A1) GN=mnmA PE=3 SV=1
Length = 354
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 48/242 (19%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D + +GHYA + + + + + K +KDQ+YFLSHLS+ Q+ +L F L
Sbjct: 116 KYDLIVTGHYAKIENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSEIR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P ++G I+E ETG L H G+WF+
Sbjct: 176 QIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSR--NYYSFDKKRHLFHAGSLKLLSGLPPE 145
TIGQ + + L + + +V EKDI+NNI+++S NY K++ L H + P
Sbjct: 236 TIGQRKGIKLSHGPW-FVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWI----NKPL 290
Query: 146 KISQLHSVFYNCSLTIE-HCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
K + L + + I+ E ++I V L E D G++ GQF FY+ CLG IL
Sbjct: 291 KNNNLSAKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYKEDECLGGAKIL 350
Query: 205 EA 206
+
Sbjct: 351 KT 352
>sp|B5RMM8|MNMA_BORDL tRNA-specific 2-thiouridylase MnmA OS=Borrelia duttonii (strain Ly)
GN=mnmA PE=3 SV=1
Length = 354
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 48/242 (19%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHL--------- 55
++D + +GHYA + + + + + K +KDQ+YFLSHLS+ Q+ +L F L
Sbjct: 116 KYDLIVTGHYAKIENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSEIR 175
Query: 56 VLYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ + +P ++G I+E ETG L H G+WF+
Sbjct: 176 QIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGELKGNIIEQETGKILGTHNGYWFF 235
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSR--NYYSFDKKRHLFHAGSLKLLSGLPPE 145
TIGQ + + L + + +V EKDI+NNI+++S NY K++ L H + + L +
Sbjct: 236 TIGQRKGIKLSHGPW-FVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNW-INKPLKND 293
Query: 146 KIS-QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+S ++ IE +D +I V L E D G++ GQF FY+ CLG IL
Sbjct: 294 NLSAKIRHGEKKIKCKIETLKD---EIIRVNLEEKDYGISPGQFCIFYKEDECLGGAKIL 350
Query: 205 EA 206
+
Sbjct: 351 KT 352
>sp|Q64WG8|MNMA2_BACFR tRNA-specific 2-thiouridylase MnmA 2 OS=Bacteroides fragilis
(strain YCH46) GN=mnmA2 PE=3 SV=1
Length = 353
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 109/245 (44%), Gaps = 54/245 (22%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FD A+GHYA + K +KDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDLTATGHYATTLQLGGKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEVR 172
Query: 57 -LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFY 87
+ R +P EG ++E ETG + HRG+WF+
Sbjct: 173 EIALRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI++NI++VS Y + + + F ++ P E
Sbjct: 233 TIGQRKGLGLGGGPW-FVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 148 SQLHSVFYNCSLTIE-------HCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+ V + T E H E+G I+ SE QG+A GQF Y + R C
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLLHDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRVCF 347
Query: 199 GSGVI 203
GSG I
Sbjct: 348 GSGEI 352
>sp|Q5LFN5|MNMA2_BACFN tRNA-specific 2-thiouridylase MnmA 2 OS=Bacteroides fragilis
(strain ATCC 25285 / NCTC 9343) GN=mnmA2 PE=3 SV=1
Length = 353
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 106/245 (43%), Gaps = 54/245 (22%)
Query: 8 EFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIF-------HLV- 56
+FD A+GHYA + K +KDQT FL+ + Q+ +L+F H V
Sbjct: 113 DFDLTATGHYATTLQLGGKTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKHEVR 172
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG ++E ETG + HRG+WF+
Sbjct: 173 EIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLGEKEGAVIEFETGKKIGTHRGYWFH 232
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI++NI++VS Y + + + F ++ P E
Sbjct: 233 TIGQRKGLGLGGGPW-FVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDNPWEGS 291
Query: 148 SQLHSVFYNCSLTIE-------HCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+ V + T E H E+G I+ SE QG+A GQF Y + R C
Sbjct: 292 TGEEEVTFKIRHTPEFIKGRLLHDEEGYRIIS----SEKLQGIAPGQFGVIYDAESRVCF 347
Query: 199 GSGVI 203
GSG I
Sbjct: 348 GSGEI 352
>sp|Q8ABF5|MNMA1_BACTN tRNA-specific 2-thiouridylase MnmA 1 OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=mnmA1 PE=3 SV=1
Length = 355
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 105/243 (43%), Gaps = 51/243 (20%)
Query: 9 FDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
FD+ A+GHYA + K VKDQT FL+ + Q+ +L+F +
Sbjct: 114 FDFTATGHYATTIRQDGKTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQEVRE 173
Query: 57 LYPRLTIP----------------------------MEGIILEAETGDFLEKHRGFWFYT 88
+ R +P EG I+E ETG + HRG+WF+T
Sbjct: 174 IASRAGLPSARRKDSQGICFLGKINYNDFVRRFLGEREGAIIELETGKKVGTHRGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS 148
IGQ + LGL + +V++KD+E NI++VS Y + F ++ P +
Sbjct: 234 IGQRKGLGLSGGPW-FVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDAG 292
Query: 149 QLHSVFYNCSLTIEHC------EDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCLGS 200
+ + + T E E+GG+ + SE QG+A GQF Y + C+GS
Sbjct: 293 KEIDITFKIRHTPEFTKGKLVQEEGGQ--FRILSSEKLQGIAPGQFGVIYDEEAGICVGS 350
Query: 201 GVI 203
G I
Sbjct: 351 GEI 353
>sp|A6LIF1|MNMA_PARD8 tRNA-specific 2-thiouridylase MnmA OS=Parabacteroides distasonis
(strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=mnmA PE=3
SV=1
Length = 358
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 46/243 (18%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA K VKDQT FL +++ Q+++L+F HL+
Sbjct: 114 DFDKIATGHYATTTEIDGKTWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R G I+E ETG L KH G+WF+
Sbjct: 174 AIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLGKRPGKIVELETGKVLGKHNGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +V++KDI+ NI++VS Y + + + ++ P +
Sbjct: 234 TIGQRKGLGLSGGPW-FVIQKDIKRNIIYVSNGYDPETQYGKVINMQGFDFITEDPWGEF 292
Query: 148 SQLHSVFYNCSLTIEHCEDGGE---DIAVVQLSEDDQGLAAGQFAAFYQGRR--CLGSGV 202
+ + T E D+ V+ E QG+A GQ++ Y CLGSG+
Sbjct: 293 EGEKEITFKIRHTPEFTHGYIRRIGDLYRVESDEKIQGIAPGQYSVIYDKDHHLCLGSGM 352
Query: 203 ILE 205
I++
Sbjct: 353 IID 355
>sp|A6KXF7|MNMA1_BACV8 tRNA-specific 2-thiouridylase MnmA 1 OS=Bacteroides vulgatus
(strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=mnmA1 PE=3
SV=1
Length = 354
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 9 FDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL---------- 55
+D A+GHYA+++ + VKDQT FL+ + Q+ +L+F L
Sbjct: 114 YDKTATGHYASILEKDGKIWLGTAQDPVKDQTDFLAQIDYLQISKLMFPLGGLMKNEVRD 173
Query: 56 ---------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFWFYT 88
R EG I+E ETG + H+G+WF+T
Sbjct: 174 IARIAKLPSAQRKDSQGICFLGKINYNEFLRRFLGEKEGDIIEMETGKRIGTHKGYWFHT 233
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNY-----YSFDKKRHLFHAGSLKLLSGLP 143
IGQ + LGL + +V+ KDI+ NI++VS Y Y D H FH + L G P
Sbjct: 234 IGQRKGLGLGGGPW-FVIRKDIDENIIYVSHGYDTDKQYGTDFALHDFHFITEDLWKGAP 292
Query: 144 PEKIS---QLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGRRCL 198
+S + F LT E +++ + QG+A GQF Y C+
Sbjct: 293 SADVSFKIRHTDTFMKGILTRE------DNLFRIHSHVPLQGIAPGQFGVLYDKNAEICV 346
Query: 199 GSGVI 203
GSG I
Sbjct: 347 GSGEI 351
>sp|A8YUQ2|MNMA_LACH4 tRNA-specific 2-thiouridylase MnmA OS=Lactobacillus helveticus
(strain DPC 4571) GN=mnmA PE=3 SV=1
Length = 375
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 105/260 (40%), Gaps = 59/260 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSAD----HKDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D ++ DY+A GHYA V + + K KDQTYFLS L+Q Q++++IF L
Sbjct: 113 LDFAMDLDADYIAMGHYAKTVKDADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLA 172
Query: 56 -VLYPRLT----------------------------------IPMEGIILEAETGDFLEK 80
+ P++ +P + + G + +
Sbjct: 173 NLTKPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLPAKSGKMVTPDGKVVGE 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
H G +YTIGQ Q LGL +VV KD++ N + V + Y S A +
Sbjct: 233 HAGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDM 292
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEH--CEDG-------GEDIAVVQLSEDDQGLAAGQ 187
+G P H V ++CS + C+ G ++ A V E + + GQ
Sbjct: 293 SFFTGKPD------HDVEFHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQ 346
Query: 188 FAAFYQGRRCLGSGVILEAW 207
YQG CLG G I A+
Sbjct: 347 ALVLYQGEECLGGGNIDAAY 366
>sp|O75648|MTU1_HUMAN Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Homo sapiens
GN=TRMU PE=1 SV=2
Length = 421
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 110/277 (39%), Gaps = 81/277 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H KP S KDQ
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFL 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV+
Sbjct: 234 LQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
+ VQ + LA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 384
>sp|Q9DAT5|MTU1_MOUSE Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Mus musculus
GN=Trmu PE=2 SV=1
Length = 417
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 110/278 (39%), Gaps = 81/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D VA+GHYA + H KP S KDQ
Sbjct: 114 AVDNLGADAVATGHYARTSLEDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQ 173
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPRLTI-------------- 63
T+FLS +SQ LRR IF H VL R ++
Sbjct: 174 TFFLSQVSQDALRRTIFPLGELTKDFVKKIAAENSLHHVLQKRESMGICFIGKRNLEHFL 233
Query: 64 -----PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVS 118
P G + E L H+G++ YT+GQ ++ L + YVVEKD V V+
Sbjct: 234 LQYLQPRPGKFVSIEDNTVLGTHKGWFLYTLGQRAKISGLREPW-YVVEKDGTKGDVLVA 292
Query: 119 RNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCEDG 167
R L + ++ PP +K+ + H F + C LT+ +DG
Sbjct: 293 PRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLN--QDG 350
Query: 168 GEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205
+ V+ +GLA GQFA FY+G CLGSG IL
Sbjct: 351 TVWVTAVKAV---RGLALGQFAVFYKGEECLGSGKILR 385
>sp|B2GB92|MNMA_LACF3 tRNA-specific 2-thiouridylase MnmA OS=Lactobacillus fermentum
(strain NBRC 3956 / LMG 18251) GN=mnmA PE=3 SV=1
Length = 377
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 67/259 (25%)
Query: 10 DYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTIPM 65
DYVA+GHYA++ A + + K KDQTYFLS L AQL +++F L Y + +
Sbjct: 122 DYVATGHYADLKRDEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVRQ 181
Query: 66 ---------------EGIILEAETGDFLE----------------------KHRGFWFYT 88
GI E G F E H G +YT
Sbjct: 182 LAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLPAQQGEMQTVDGKVVGTHAGLMYYT 241
Query: 89 IGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
IGQ + LGL +V+ KDI N+++V + Y + HL+ A ++
Sbjct: 242 IGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGY----ENEHLY-ATHMEASDIHWV 296
Query: 145 EKISQLHSVFYNCS-----------LTIEHCEDGGEDIAVVQLSEDD--QGLAAGQFAAF 191
+ + + + ++C+ +T++ +DG +V ++ DD + + GQ F
Sbjct: 297 DDVVSRYGMEFHCTAKFRYRQKDEGVTVKLSDDG----QMVTVTSDDPARAITPGQAVVF 352
Query: 192 YQGRRCLGSGVILEAWDDQ 210
Y G CLGS +I A++ +
Sbjct: 353 YDGDECLGSAIIDRAYNQE 371
>sp|Q1GAS1|MNMA_LACDA tRNA-specific 2-thiouridylase MnmA OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC 11842 / DSM 20081)
GN=mnmA PE=3 SV=1
Length = 375
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 97/250 (38%), Gaps = 47/250 (18%)
Query: 7 MEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA + + H +P KDQTYFLS L+Q Q++R++F L + P
Sbjct: 119 LDADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPE 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P +G + G + H G +
Sbjct: 179 VRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPDGKVVGHHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD+E N + V + Y S A + +G
Sbjct: 239 YTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMTFFTGN 298
Query: 143 PPEKISQLHSV---FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P E + + C + + A V E + + GQ Y G CLG
Sbjct: 299 PEEDTEFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLYNGEECLG 358
Query: 200 SGVILEAWDD 209
G I A+ D
Sbjct: 359 GGNIDAAFKD 368
>sp|Q6AIZ6|MNMA_DESPS tRNA-specific 2-thiouridylase MnmA OS=Desulfotalea psychrophila
(strain LSv54 / DSM 12343) GN=mnmA PE=3 SV=1
Length = 344
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 107/251 (42%), Gaps = 59/251 (23%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIFHL---- 55
AI + +A+GHYA + ++A HK KDQ+YFLS LSQ QL IF L
Sbjct: 104 AILRQGVERIATGHYAQIHKTAAGYQLHKGVDPHKDQSYFLSRLSQEQLAHSIFPLGGMH 163
Query: 56 --VLYP----------RLTIPMEGIILEAE-TGDFLE---------------------KH 81
+Y R T + LE + DFLE KH
Sbjct: 164 KGAIYDLVEAHGFHDFRGTESQDVCFLEQDNVVDFLEQTAEFSASSGNIVMNDGKILGKH 223
Query: 82 RGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG 141
+G YT+GQ + LG+ Y V YV+ D++NN V V N F K + + +S
Sbjct: 224 KGLHRYTVGQRRGLGISYPVPLYVINLDVKNNNVIVGENEQLFHKTMAI---SDIHWIS- 279
Query: 142 LPPEKISQLHSVFYNCSLTIEHCEDGGE--------DIAVVQLSEDDQGLAAGQFAAFYQ 193
PE+ LH+ S+ I G + + A V E + + GQFA Y+
Sbjct: 280 -QPEREDLLHA-----SVHIRSTHKGAQASVILKENNRASVIFDEPQRAITPGQFATIYK 333
Query: 194 GRRCLGSGVIL 204
+ LGSGVIL
Sbjct: 334 DTQVLGSGVIL 344
>sp|Q2Y6T6|MNMA_NITMU tRNA-specific 2-thiouridylase MnmA OS=Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849) GN=mnmA PE=3 SV=1
Length = 363
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 107/260 (41%), Gaps = 57/260 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV- 56
+D + + DY+A+GHYA V ++ K + KDQ+YFL L+QAQL R +F +
Sbjct: 110 LDHAAGLGADYIATGHYAQVRNTDGVFQLLKGEDGTKDQSYFLYRLNQAQLSRALFPIGH 169
Query: 57 LYPRLT-----------------------------------IPMEGIILEAETGDFLEKH 81
LY R +P + + +GD + +H
Sbjct: 170 LYKRDVRSIAKDHGLPNFSKKDSTGICFIGERPFREFLNRYLPNDPGEIRTPSGDVMGRH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
G +YTIGQ Q LG+ +V EKD++ N++ V + + D R A L
Sbjct: 230 AGLMYYTIGQRQGLGIGGTRGGDGEPWFVSEKDVKRNVLTVVQGHDHPDLLRPALAATDL 289
Query: 137 KLLSGLPPE-------KISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+SG P KI S CS+T C ++ ++ +A GQ
Sbjct: 290 TWVSGKMPRCNWVYAAKIRYRQSD-APCSITYLDCNK-----CKIEFAQPQWAVAPGQSV 343
Query: 190 AFYQGRRCLGSGVILEAWDD 209
Y+ + CLG GVI DD
Sbjct: 344 VVYESKVCLGGGVIAATQDD 363
>sp|B2A5K1|MNMA_NATTJ tRNA-specific 2-thiouridylase MnmA OS=Natranaerobius thermophilus
(strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=mnmA
PE=3 SV=1
Length = 368
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 61/252 (24%)
Query: 6 SMEFDYVASGHYANVVHSSAD-----HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLY-- 58
++E DY+A+GHY+ +V+ + ++ K KDQ+Y LS L+Q QL R +F L Y
Sbjct: 123 ALECDYIATGHYSKIVYDNLKNRYLLYRGKDKTKDQSYMLSQLTQEQLARTLFPLGDYYK 182
Query: 59 ---------------------------------------PRLTIPMEGIILEAETGDFLE 79
P P G IL+A+ G+ L
Sbjct: 183 EDVRNIAEQNELGVADKPDSQEICFVPNNDYGEFLQSVVPEHINP--GPILDAQ-GNKLG 239
Query: 80 KHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL-KL 138
+H+G FYTIGQ + LG+ YV++ D +NN + V K L+ G + +
Sbjct: 240 EHKGIAFYTIGQRRGLGISLGRPVYVIDIDADNNALIVG-------DKEELYSDGLIAEE 292
Query: 139 LSGLPPEKISQL----HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194
++ +P E+I + YN + G D +V+ ++ + + GQ FYQ
Sbjct: 293 INLIPYEQIENSIDIECKIRYNSRNVSSTLQPYGNDQLLVKFNQPVEAVTPGQGVTFYQD 352
Query: 195 RRCLGSGVILEA 206
+G G IL+A
Sbjct: 353 DLVIGGGTILKA 364
>sp|Q04B58|MNMA_LACDB tRNA-specific 2-thiouridylase MnmA OS=Lactobacillus delbrueckii
subsp. bulgaricus (strain ATCC BAA-365) GN=mnmA PE=3
SV=1
Length = 375
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 97/250 (38%), Gaps = 47/250 (18%)
Query: 7 MEFDYVASGHYANVV--HSSADHKDKP--SVKDQTYFLSHLSQAQLRRLIFHL--VLYPR 60
++ DY+A GHYA + + H +P KDQTYFLS L+Q Q++R++F L + P
Sbjct: 119 LDADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPE 178
Query: 61 LT----------------------------------IPMEGIILEAETGDFLEKHRGFWF 86
+ +P +G + G + H G +
Sbjct: 179 VRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLPAQGGDMVTPDGKVVGHHAGLMY 238
Query: 87 YTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL 142
YTIGQ Q LGL +VV KD+E N + V + Y S A + +G
Sbjct: 239 YTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMTFFTGN 298
Query: 143 PPEKISQLHSV---FYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P E + + C + + A V E + + GQ Y G CLG
Sbjct: 299 PEEDTEFKATAKFRYRQCDVGVTVKYYAASKTADVYFDEPARAVTPGQALVLYNGEECLG 358
Query: 200 SGVILEAWDD 209
G I A+ D
Sbjct: 359 GGNIDAAFKD 368
>sp|Q92BK1|MNMA_LISIN tRNA-specific 2-thiouridylase MnmA OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=mnmA PE=3 SV=1
Length = 371
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGDMRTLNGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++NN++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDISFTTNSEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTFVCTAKFRYRQTDTKVTVNMREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>sp|B2RHP0|MNMA_PORG3 tRNA-specific 2-thiouridylase MnmA OS=Porphyromonas gingivalis
(strain ATCC 33277 / DSM 20709 / JCM 12257) GN=mnmA PE=3
SV=1
Length = 361
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 103/248 (41%), Gaps = 50/248 (20%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA + K VKDQT FL+ ++ AQ+ +L+F HL+
Sbjct: 114 QFDRIATGHYATTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG + +H+G+WF+
Sbjct: 174 AIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI+ NI+ VSR Y + + ++ E
Sbjct: 234 TIGQRKGLGLSGGPW-FVVKKDIKRNIILVSRGYDPDTQYGKTIEMETFDFITEDAYEAG 292
Query: 148 SQLHSVFYNCSLTIEHCED-------GGEDIAVVQLSEDDQGLAAGQFAAFYQGRR--CL 198
+ I H + GE ++ E QG+A GQ+ Y C
Sbjct: 293 YWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIYDEDHHLCY 352
Query: 199 GSGVILEA 206
GSG+I +
Sbjct: 353 GSGMITKG 360
>sp|Q8Y714|MNMA_LISMO tRNA-specific 2-thiouridylase MnmA OS=Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=mnmA PE=3
SV=1
Length = 371
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDVCLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>sp|Q7MAW9|MNMA_PORGI tRNA-specific 2-thiouridylase MnmA OS=Porphyromonas gingivalis
(strain ATCC BAA-308 / W83) GN=mnmA PE=3 SV=1
Length = 361
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 103/248 (41%), Gaps = 50/248 (20%)
Query: 8 EFDYVASGHYANVVHSSAD---HKDKPSVKDQTYFLSHLSQAQLRRLIF---HLV----- 56
+FD +A+GHYA + K VKDQT FL+ ++ AQ+ +L+F HL+
Sbjct: 114 QFDRIATGHYATTDLLNGKTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEVR 173
Query: 57 -----------------------------LYPRLTIPMEGIILEAETGDFLEKHRGFWFY 87
R EG I+E ETG + +H+G+WF+
Sbjct: 174 AIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLGKKEGRIIELETGKVIGRHQGYWFH 233
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI 147
TIGQ + LGL + +VV+KDI+ NI+ VSR Y + + ++ E
Sbjct: 234 TIGQRKGLGLSGGPW-FVVKKDIKRNIILVSRGYDPDAQYGKTIEMETFDFITEDAYEAG 292
Query: 148 SQLHSVFYNCSLTIEHCED-------GGEDIAVVQLSEDDQGLAAGQFAAFYQGRR--CL 198
+ I H + GE ++ E QG+A GQ+ Y C
Sbjct: 293 YWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIYDEDHHLCY 352
Query: 199 GSGVILEA 206
GSG+I +
Sbjct: 353 GSGMITKG 360
>sp|A5EVB4|MNMA_DICNV tRNA-specific 2-thiouridylase MnmA OS=Dichelobacter nodosus (strain
VCS1703A) GN=mnmA PE=3 SV=1
Length = 376
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 64/248 (25%)
Query: 10 DYVASGHYANVV----HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHL---------- 55
D++A+GHYA + H +A K + KDQ+YFL ++ AQL + IF L
Sbjct: 127 DFLATGHYAQRLQSDNHEAALFKGVDAQKDQSYFLHQITPAQLNKAIFPLGGLQKKQVRA 186
Query: 56 --------------------------VLYPRLTIPMEGIILEAETGDFLEKHRGFWFYTI 89
+ + +P + +++ G+ + +H G +YTI
Sbjct: 187 IARERGLTTFDKKDSTGICFIGERPFRAFLQQYLPAQKGLMKTPNGEIVGEHMGLMYYTI 246
Query: 90 GQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP 144
GQ Q LG+ I YV+EKD+ NN++ V + + R L AG L L+ P
Sbjct: 247 GQRQGLGIGGIAGASEEPWYVLEKDLSNNVLIVGQGDHPLLYHRVLI-AGQLSWLNEAP- 304
Query: 145 EKISQLHSVFYNC---------SLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
+ FY+ +++ DG + QL + + GQ+A Y G
Sbjct: 305 -----IAGRFYHAKTRYRQSDQKCRVDYAADGRLQLTFEQLQ---RAITLGQYAVIYDGE 356
Query: 196 RCLGSGVI 203
RCLG GVI
Sbjct: 357 RCLGGGVI 364
>sp|Q5KWT8|MNMA2_GEOKA tRNA-specific 2-thiouridylase MnmA 2 OS=Geobacillus kaustophilus
(strain HTA426) GN=mnmA2 PE=3 SV=1
Length = 371
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DY+A+GHYA V ++K KDQTYFL+ L QAQL +++F + +
Sbjct: 119 SIGADYIATGHYARVEFRDGEYKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIGHLQKAD 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + +++ G+ +H G +
Sbjct: 179 VRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLPAQPGVMKTLDGEVKGRHDGVMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD+ N+++V++ + + A + +S PE
Sbjct: 239 YTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVNWVSDRKPE 298
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ + F + +T+ DGG A V + + GQ FY G CLG G
Sbjct: 299 APFRCTAKFRYRQPDVGVTVHPLADGG---AEVVFDAPARAVTPGQAVVFYNGEECLGGG 355
Query: 202 VILEAW 207
I E +
Sbjct: 356 TIDEVF 361
>sp|Q71ZF8|MNMA_LISMF tRNA-specific 2-thiouridylase MnmA OS=Listeria monocytogenes
serotype 4b (strain F2365) GN=mnmA PE=3 SV=1
Length = 371
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLNGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>sp|C1KVF9|MNMA_LISMC tRNA-specific 2-thiouridylase MnmA OS=Listeria monocytogenes
serotype 4b (strain CLIP80459) GN=mnmA PE=3 SV=1
Length = 371
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLNGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>sp|B8DDZ8|MNMA_LISMH tRNA-specific 2-thiouridylase MnmA OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=mnmA PE=3 SV=1
Length = 371
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ D+VA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADFVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGAMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLNGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDISFTTNAAKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ EDG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTIECTAKFRYRQTDTKVTVHLREDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAW 207
I W
Sbjct: 356 TIDTVW 361
>sp|Q039P7|MNMA_LACC3 tRNA-specific 2-thiouridylase MnmA OS=Lactobacillus casei (strain
ATCC 334) GN=mnmA PE=3 SV=1
Length = 377
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 107/260 (41%), Gaps = 61/260 (23%)
Query: 1 MDAISSMEFDYVASGHYANV-------VH--SSADHKDKPSVKDQTYFLSHLSQAQLRRL 51
+D + DY+A GHYA V VH AD KDQTYFLS LSQ QL++
Sbjct: 117 LDYADQLNADYIAMGHYAQVKTDENGIVHMLRGADGN-----KDQTYFLSQLSQDQLKKS 171
Query: 52 IFHL--VLYPRLTIPME-------------GII--------------LEAETGDFLE--- 79
+F + + P + E GI L A+ G +
Sbjct: 172 LFPIGHLQKPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLPAQPGKMMTVDG 231
Query: 80 ----KHRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLF 131
H G +YTIGQ Q LG+ +VV KD++ NI++V + + +
Sbjct: 232 VEMGTHDGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSL 291
Query: 132 HAGSLKLLSGLPPEKISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQ 187
A +L +G P + + + + F + +T+ + +DG A V + + GQ
Sbjct: 292 SASNLNWTTGQAPAEGTHMTAKFRYRQRDTGVTLHYHDDG---TATVDFDVPVRAITPGQ 348
Query: 188 FAAFYQGRRCLGSGVILEAW 207
FY G CLG G I A+
Sbjct: 349 AVVFYDGDECLGGGTIDAAY 368
>sp|Q5ZKW0|MTU1_CHICK Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Gallus gallus
GN=TRMU PE=2 SV=1
Length = 424
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 115/285 (40%), Gaps = 89/285 (31%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKPS---------------------VKDQ 36
A+ ++ D +A+GHYA + H +P KDQ
Sbjct: 115 AMDNLGADAIATGHYARTSLEDEEVFQQKHTKRPRELFRNRFEVRNTVKLLQGADLFKDQ 174
Query: 37 TYFLSHLSQAQLRRLIF-------------------HLVLYPR---LTIPMEGI------ 68
T+FLS +SQ LR+ IF H VL + T P + +
Sbjct: 175 TFFLSQISQDALRKTIFPLGDLTKSFVRKIASEHGLHHVLKKKEACTTFPFQSMGVCFIG 234
Query: 69 ----------ILEAETGDFLE--------KHRGFWFYTIGQHQELGLLYIVYRYVVEKDI 110
LE + G+F+ H+G++ YTIGQ L L + +VV+KD+
Sbjct: 235 ERNFEKFLLEYLEPQPGNFVSIEDKKVMGTHKGWFLYTIGQRARLAGLQGAW-FVVDKDV 293
Query: 111 ENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSL 159
+FV+ + R L + ++ PP +K+ + H F + C L
Sbjct: 294 STGDIFVAPSTDHPALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVL 353
Query: 160 TIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
T+ +DG + +V+ + + L GQFA FY+G CLGSG IL
Sbjct: 354 TLN--QDGSVWVTLVKPA---RALTPGQFAVFYKGDECLGSGKIL 393
>sp|A8FFP0|MNMA_BACP2 tRNA-specific 2-thiouridylase MnmA OS=Bacillus pumilus (strain
SAFR-032) GN=mnmA PE=3 SV=1
Length = 372
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 57/254 (22%)
Query: 6 SMEFDYVASGHYANVVHSSADHK---DKPSVKDQTYFLSHLSQAQLRRLIF--------- 53
S+ DY+A+GHYA V + + K + KDQTYFL+ L+Q QL +++F
Sbjct: 119 SLGADYLATGHYARVDRTGDEVKMLRGLDANKDQTYFLNQLTQEQLDKVMFPIGDLEKKR 178
Query: 54 ---------------------------HLVLYPRLTIPMEGIILEAETGDFLEKHRGFWF 86
+ + +P + +++ G+ +H G +
Sbjct: 179 VRELAKEAELATATKKDSTGICFIGERNFKTFLSQYLPAQPGVMQTMDGEVKGEHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL--LSGLP 143
YTIGQ Q LG+ +VV KD+E NI+FV + +++ L ++ S+ +S
Sbjct: 239 YTIGQRQGLGIGGSGDPWFVVGKDLEQNILFVEQGFHN-----PLLYSESISAVNISWTR 293
Query: 144 PEKISQLHSVFYNCSLTIEHCEDG--------GEDIAVVQLSEDDQGLAAGQFAAFYQGR 195
P + + + C+ + ++ GE A+V E + + GQ FY G
Sbjct: 294 PHIVGENGEL--TCTAKFRYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFYDGD 351
Query: 196 RCLGSGVILEAWDD 209
CLG G I + + D
Sbjct: 352 ECLGGGTIDDVFKD 365
>sp|Q5RB73|MTU1_PONAB Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Pongo abelii
GN=TRMU PE=2 SV=1
Length = 422
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 109/278 (39%), Gaps = 82/278 (29%)
Query: 3 AISSMEFDYVASGHYANVVHSSAD-----HKDKP---------------------SVKDQ 36
A+ ++ D +A+GHYA + H KP S K Q
Sbjct: 114 AVDNLGADAIATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQ 173
Query: 37 TYFLSHL-SQAQLRRLIF-------------------HLVLYPRLTI------------- 63
T+FLS + SQ LRR IF H VL + ++
Sbjct: 174 TFFLSQVFSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHF 233
Query: 64 ------PMEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFV 117
P G + E L H+G++ YT+GQ +G L + YVVEKD VFV
Sbjct: 234 LLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPW-YVVEKDSVKGDVFV 292
Query: 118 SRNYYSFDKKRHLFHAGSLKLLSGLPP-----EKISQLHSVFYN------CSLTIEHCED 166
+ R L + ++ PP +K+ + H F + C LT+ +D
Sbjct: 293 APRTDHPALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLN--QD 350
Query: 167 GGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVIL 204
G + VQ + LA GQFA FY+G CLGSG IL
Sbjct: 351 GTVWVTAVQAV---RALATGQFAVFYKGDECLGSGKIL 385
>sp|Q03QJ0|MNMA_LACBA tRNA-specific 2-thiouridylase MnmA OS=Lactobacillus brevis (strain
ATCC 367 / JCM 1170) GN=mnmA PE=3 SV=1
Length = 375
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 55/261 (21%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHL- 55
+D + DY+A+GHYA + A H + KDQTYFLS LS QL R++F +
Sbjct: 113 LDYALELGADYIATGHYAQLTRDEAGHAHLMRAVDQNKDQTYFLSQLSTEQLDRVMFPIG 172
Query: 56 -VLYPRLT-IPME------------GIILEAETG---DFLEK------------------ 80
++ P++ I E GI E G DFL+
Sbjct: 173 DLVKPQVREIAKEAGLATAEKKDSMGICFIGEKGHFKDFLKTYLPAKAGDMMTVDGEIKG 232
Query: 81 -HRGFWFYTIGQHQELGLLYIVYR----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGS 135
H G +YTIGQ + LG+ +V+ KD++ NI++V + Y++ A
Sbjct: 233 HHAGLMYYTIGQRKGLGIGGDGIDNEPWFVIGKDLQKNILYVGKGYHNPHLYATHLSASD 292
Query: 136 LKLLSGLPPEKISQLHSVFY------NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189
+ ++ + ++ S H + +T+ H D G+ + V+ + + + GQ
Sbjct: 293 IHWVNTI--DRGSDFHCTAKFRYRQKDTGVTV-HLNDDGQQV-TVEFDDPARAITPGQAV 348
Query: 190 AFYQGRRCLGSGVILEAWDDQ 210
FY G CLGS +I A++ +
Sbjct: 349 VFYNGDECLGSAIIDAAYNQE 369
>sp|A0AIW1|MNMA_LISW6 tRNA-specific 2-thiouridylase MnmA OS=Listeria welshimeri serovar
6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=mnmA
PE=3 SV=1
Length = 371
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 47/249 (18%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA V + + V KDQTYFL+ LSQ QL++++F L +
Sbjct: 119 SLGADYVATGHYAQVKKIGDEIELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLGGMEKTE 178
Query: 63 I------------------------------------PMEGIILEAETGDFLEKHRGFWF 86
+ P + + G+ L KH G +
Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQPGEMRTLDGEVLGKHDGLMY 238
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YTIGQ LG+ +VV KD++ N++FV + ++ A + +
Sbjct: 239 YTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHESLYSDSLIATDISFTTNAEKP 298
Query: 146 KISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
K + + F + +T+ DG A V ++ + + GQ FY G CLG G
Sbjct: 299 KTFECTAKFRYRQTDTKVTVHLRSDG---TAEVVFADPVRAITPGQAVVFYDGDICLGGG 355
Query: 202 VILEAWDDQ 210
I W ++
Sbjct: 356 TIDTVWKNE 364
>sp|B4U7E2|MNMA_HYDS0 tRNA-specific 2-thiouridylase MnmA OS=Hydrogenobaculum sp. (strain
Y04AAS1) GN=mnmA PE=3 SV=1
Length = 342
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 49/237 (20%)
Query: 6 SMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLV--------- 56
+ + D++A+GHY V+ K + KDQ+YF++ + + L L+F +
Sbjct: 115 TADIDFLATGHY--VIKEEGKIK-RAKEKDQSYFMALVPKQSLDYLMFPVGYMTKQEIRD 171
Query: 57 LYPRLTIPM----------------------------EGIILEAETGDFLEKHRGFWFYT 88
+ ++ +P+ +G I+ T L KH+G YT
Sbjct: 172 IAKKINLPVANKIESQDVCFLKGMDLEDYLSQFIDMTQGDIVHIATQKTLGKHKGIHRYT 231
Query: 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP-EKI 147
IGQ LG+ Y YVVEKDIE NI++V Y L A +LK + L EK
Sbjct: 232 IGQRHGLGVSYHKPLYVVEKDIEKNILYVGEKEYL------LKDAITLKDYNKLEDFEKD 285
Query: 148 SQLHSVFYNCS-LTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203
+ + YN + I+H E+ +++ ++ L E +A GQ A Y G LG G+I
Sbjct: 286 NMYIQIRYNSKPIPIKHIEENKDNV-IIFLKEPATQVAKGQVGAIYFGDILLGGGII 341
>sp|Q0ADM9|MNMA_NITEC tRNA-specific 2-thiouridylase MnmA OS=Nitrosomonas eutropha (strain
C91) GN=mnmA PE=3 SV=1
Length = 361
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 61/259 (23%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLV- 56
+D ++ D++A+GHYA V + K + KDQ+YFL L+Q QL R IF +
Sbjct: 110 LDHALALGADWIATGHYAQVHEINGQFQLLKGEDGNKDQSYFLYRLNQQQLSRTIFPIGH 169
Query: 57 LYPRLT-----------------------------------IPMEGIILEAETGDFLEKH 81
LY R +P++ + G + +H
Sbjct: 170 LYKREVRKIAHKHGLPNSTKKDSTGICFIGERPFREFLNRYLPVDPGEIHTLDGQIVGEH 229
Query: 82 RGFWFYTIGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSL 136
+G +YTIGQ Q LG+ I +V KD++ N+++V + + R A L
Sbjct: 230 QGLMYYTIGQRQGLGIGGIREGSEQPWFVSGKDMQTNVLYVVQGHDHPALLRSSLTAADL 289
Query: 137 KLLSGLPPEKISQLHSVFYNCSLTIEHCEDGGEDIAVVQLSEDD---------QGLAAGQ 187
+SG PP + S +++ T C A+++L D G+ GQ
Sbjct: 290 SWISGAPPHQ-SWVYAAKIRYRQTDAPC-------AIIRLEHDSCQIGFAAPQWGVTPGQ 341
Query: 188 FAAFYQGRRCLGSGVILEA 206
Y+ + CLG G+I ++
Sbjct: 342 SVVIYESKVCLGGGIITDS 360
>sp|Q5WHN4|MNMA_BACSK tRNA-specific 2-thiouridylase MnmA OS=Bacillus clausii (strain
KSM-K16) GN=mnmA PE=3 SV=1
Length = 364
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 47/242 (19%)
Query: 6 SMEFDYVASGHYANVVHSSADH---KDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLT 62
S+ DYVA+GHYA + ++ K + KDQTYFL+ LSQ QL +++F L +
Sbjct: 118 SLGADYVATGHYAQLQELDGEYRLIKGADANKDQTYFLNALSQKQLSKVMFPLGHLQKAE 177
Query: 63 I---------------PMEGIIL-------------------EAETGDFLEK--HRGFWF 86
+ GI ET D ++K H G +
Sbjct: 178 VRKIAAEAELATATKKDSTGICFIGERDFKEFLQTFLPAQPGRMETMDGIDKGQHDGLMY 237
Query: 87 YTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE 145
YT+GQ Q LG+ +V++KD+E N++ V + Y+ A + ++
Sbjct: 238 YTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGYHHPGLYSDGLWATDMNWIAKEERT 297
Query: 146 KISQLHSVFY----NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
+ F + +T+ EDG A +Q + + + GQ Y+G RC+G G
Sbjct: 298 SPFTCKAKFRYRQEDQGVTVFPKEDG---RAFIQFDQPQRAITPGQAVVLYEGDRCIGGG 354
Query: 202 VI 203
VI
Sbjct: 355 VI 356
>sp|B1YJE9|MNMA_EXIS2 tRNA-specific 2-thiouridylase MnmA OS=Exiguobacterium sibiricum
(strain DSM 17290 / JCM 13490 / 255-15) GN=mnmA PE=3
SV=1
Length = 374
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 47/251 (18%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADHKDKPSV---KDQTYFLSHLSQAQLRRLIF---H 54
+D + D+VA+GHYA V+ +HK V KDQTYFL+ LSQ Q+ + +F H
Sbjct: 117 LDHAMRLGADFVATGHYARAVYEDGEHKLLRGVDTNKDQTYFLNQLSQDQIAKAMFPIGH 176
Query: 55 LVLYPRLTIPMEGIILEAET---------------------------------GDFLEKH 81
+ I E + A+ G + +H
Sbjct: 177 MEKSEVRKIAEEANLATAKKKDSTGICFIGERNFKQFLSQYLPAQPGEMRTLDGKTMGRH 236
Query: 82 RGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS 140
G +YT+GQ LG+ +VV K++++NI+FV + +++ +A + +
Sbjct: 237 DGLMYYTMGQRHGLGIGGDGEPWFVVGKNLQDNILFVEQGFHNELLYSEGLYASDISWTA 296
Query: 141 GLPPEKISQLHSVF----YNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRR 196
+P + + F + +T+ + G D+A E + + GQ FY G
Sbjct: 297 TMPAGTEFRCTAKFRYRQTDTPVTVRVLDGGRLDVA---FDERQRAITPGQAVVFYDGDV 353
Query: 197 CLGSGVILEAW 207
CLG I +A+
Sbjct: 354 CLGGATIDDAY 364
>sp|O67274|MNMA_AQUAE tRNA-specific 2-thiouridylase MnmA OS=Aquifex aeolicus (strain VF5)
GN=mnmA PE=3 SV=1
Length = 356
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 56/245 (22%)
Query: 8 EFDYVASGHYANV----VHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPRLTI 63
+ D +A+GHYA + + + K +DQTYFLS + + L L F L Y + +
Sbjct: 120 DIDKLATGHYAKIEEDKKYGLVIKRPKDRKRDQTYFLSLVRREDLELLTFPLGAYTKEEV 179
Query: 64 P------------------------------MEGII------LEAETGDFLEKHRGFWFY 87
+EGI+ ++ +G L +H G + Y
Sbjct: 180 REIAKRYGLEVAQKRDSQEVCFLMGKSPGEYLEGILGKQRGLIKHVSGKVLGEHEGVYRY 239
Query: 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHL----FHAGSLKLLSGLP 143
TIGQ + LG+ Y YV++ D + N + V Y ++ K + FH +P
Sbjct: 240 TIGQRRGLGISYGKPVYVIDIDAKTNTLIVGEEEYLYNDKLLVKEINFH---------VP 290
Query: 144 PEKISQLHS--VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSG 201
EK + + + + + +E E E +V+ ED +G+ GQ AFY G LG G
Sbjct: 291 LEKWENVSAQIRYRHKPVPVERIEKTEEGF-LVKFKEDVRGITPGQVVAFYDGDVLLGGG 349
Query: 202 VILEA 206
+I E+
Sbjct: 350 IIEES 354
>sp|A4J081|MNMA_FRATW tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=mnmA PE=3 SV=1
Length = 359
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
>sp|Q5NEF9|MNMA_FRATT tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4) GN=mnmA PE=3 SV=2
Length = 359
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
>sp|B2SEJ7|MNMA_FRATM tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
mediasiatica (strain FSC147) GN=mnmA PE=3 SV=1
Length = 359
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
>sp|Q14FW2|MNMA_FRAT1 tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
tularensis (strain FSC 198) GN=mnmA PE=3 SV=2
Length = 359
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
>sp|Q8CXC7|MNMA_OCEIH tRNA-specific 2-thiouridylase MnmA OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=mnmA PE=3 SV=1
Length = 371
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 58/253 (22%)
Query: 1 MDAISSMEFDYVASGHYANVVHSSADH----KDKPSVKDQTYFLSHLSQAQLRRLIFHLV 56
+D ++ DY+A+GHYA V + KDQTYFL+ LS+ L +++F L
Sbjct: 113 LDHALALGADYLATGHYAQVRRDKNGRVEMLRGNDENKDQTYFLNQLSEDVLDKVMFPLG 172
Query: 57 LYPR---LTIPMEGIILEAETGD--------------FLEK------------------- 80
P+ I E ++ AE D FL +
Sbjct: 173 HLPKSEVRKIAKEHELVTAEKKDSTGICFIGERNFKEFLSEYLPAQPGEMQTLDGIVKGS 232
Query: 81 HRGFWFYTIGQHQELGLLYIVYR-YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKL- 138
H G +YT+GQ Q LG+ +VV K++ +NI++V + Y + +L+ +
Sbjct: 233 HDGLMYYTLGQRQGLGIGGSGDPWFVVGKNLTDNILYVGQGY----ENDYLYSNALVATD 288
Query: 139 LSGLPPEKISQLHSVFYNCSLTIEHCEDGGE--------DIAVVQLSEDDQGLAAGQFAA 190
++ + P+KIS +NC+ + + E + V ED + + GQ
Sbjct: 289 INWIQPDKISDT----FNCTAKFRYRQQDSEVNVTIKSENEVYVAFKEDQRAITPGQAVV 344
Query: 191 FYQGRRCLGSGVI 203
FY G CLG G I
Sbjct: 345 FYDGEVCLGGGTI 357
>sp|Q0BP64|MNMA_FRATO tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=mnmA PE=3 SV=2
Length = 359
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
>sp|Q2A5X5|MNMA_FRATH tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=mnmA PE=3 SV=1
Length = 359
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
>sp|A7N9A5|MNMA_FRATF tRNA-specific 2-thiouridylase MnmA OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=mnmA PE=3 SV=1
Length = 359
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 101/245 (41%), Gaps = 54/245 (22%)
Query: 10 DYVASGHYANVVHSSADH-----KDKPSVKDQTYFLSHLSQAQLRRLIF----------- 53
DY+A+GHYA +AD K KDQTYFL L Q QLR+ IF
Sbjct: 119 DYIATGHYAQT-RLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVR 177
Query: 54 ------HLVLYPRLTIPMEGIILEAETGDFLEK-------------------HRGFWFYT 88
+LV + + I E + +FL K H G +YT
Sbjct: 178 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYT 237
Query: 89 IGQHQELGLLYIVYR-----YVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL- 142
IGQ Q LG+ + R + +KD+ENN++ + + + A L ++G+
Sbjct: 238 IGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMA 297
Query: 143 PPEKISQLHSVFY---NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLG 199
P +K V Y + S +E +DG + V + + + GQ FY CLG
Sbjct: 298 PADKFRCAAKVRYRQKDQSCEVEVNQDGSVN---VTFDQPQRAITPGQSVVFYIDDVCLG 354
Query: 200 SGVIL 204
GVI+
Sbjct: 355 GGVII 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,050,336
Number of Sequences: 539616
Number of extensions: 4903051
Number of successful extensions: 13412
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 353
Number of HSP's that attempted gapping in prelim test: 11237
Number of HSP's gapped (non-prelim): 1485
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)