Query 048403
Match_columns 300
No_of_seqs 129 out of 1049
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:13:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03054 tRNA_Me_trans: tRNA m 100.0 9.5E-65 2.1E-69 489.5 16.8 198 1-203 108-356 (356)
2 PRK14665 mnmA tRNA-specific 2- 100.0 2.7E-57 5.9E-62 438.1 20.5 194 2-204 107-359 (360)
3 PRK14664 tRNA-specific 2-thiou 100.0 1.8E-57 3.9E-62 439.8 18.1 195 2-205 102-347 (362)
4 KOG2805 tRNA (5-methylaminomet 100.0 2.3E-56 5E-61 421.3 18.3 205 3-213 116-377 (377)
5 cd01998 tRNA_Me_trans tRNA met 100.0 2.3E-55 5E-60 421.9 21.3 196 2-203 107-349 (349)
6 TIGR00420 trmU tRNA (5-methyla 100.0 2E-55 4.4E-60 423.6 20.2 194 2-203 110-352 (352)
7 PRK00143 mnmA tRNA-specific 2- 100.0 1.6E-55 3.4E-60 422.9 18.4 193 2-204 110-346 (346)
8 COG0482 TrmU Predicted tRNA(5- 100.0 2.7E-55 5.9E-60 422.2 19.3 199 1-206 109-355 (356)
9 PRK00074 guaA GMP synthase; Re 97.2 0.00022 4.9E-09 72.7 3.5 61 2-64 309-380 (511)
10 PRK00509 argininosuccinate syn 96.6 0.00039 8.5E-09 69.3 -0.6 44 2-60 103-152 (399)
11 PRK08384 thiamine biosynthesis 96.0 0.00095 2.1E-08 66.1 -1.9 47 2-60 278-325 (381)
12 cd01997 GMP_synthase_C The C-t 95.9 0.0067 1.4E-07 58.2 3.6 62 2-64 93-165 (295)
13 PRK13820 argininosuccinate syn 95.9 0.0021 4.5E-08 64.0 0.1 45 2-60 103-149 (394)
14 PLN00200 argininosuccinate syn 95.7 0.0023 5E-08 63.9 -0.6 43 2-59 107-152 (404)
15 PTZ00327 eukaryotic translatio 92.6 0.94 2E-05 46.1 10.2 105 90-205 323-451 (460)
16 cd01992 PP-ATPase N-terminal d 91.1 0.049 1.1E-06 46.9 -0.7 54 2-60 90-149 (185)
17 TIGR00552 nadE NAD+ synthetase 90.5 0.094 2E-06 48.5 0.5 42 2-60 122-163 (250)
18 cd04094 selB_III This family r 88.9 0.7 1.5E-05 36.6 4.4 48 155-203 45-97 (97)
19 PLN02347 GMP synthetase 88.1 0.42 9E-06 49.6 3.2 55 9-64 336-404 (536)
20 TIGR03680 eif2g_arch translati 87.9 3.4 7.4E-05 40.9 9.4 104 90-204 285-406 (406)
21 PRK10512 selenocysteinyl-tRNA- 87.5 3.2 6.9E-05 43.8 9.3 104 88-208 232-342 (614)
22 TIGR02432 lysidine_TilS_N tRNA 86.7 0.19 4E-06 43.7 -0.2 54 2-60 93-153 (189)
23 cd03706 mtEFTU_III Domain III 86.1 1.6 3.4E-05 34.2 4.8 35 170-205 58-92 (93)
24 PRK04000 translation initiatio 83.7 7.2 0.00016 38.9 9.3 47 152-204 361-411 (411)
25 cd03707 EFTU_III Domain III of 83.1 2.6 5.7E-05 32.6 4.8 34 169-203 57-90 (90)
26 TIGR00485 EF-Tu translation el 81.0 6.6 0.00014 38.7 7.9 107 90-206 272-392 (394)
27 PLN03126 Elongation factor Tu; 80.8 12 0.00026 38.4 9.9 109 89-207 350-477 (478)
28 TIGR00475 selB selenocysteine- 80.2 8.1 0.00017 40.4 8.6 48 153-206 290-338 (581)
29 TIGR00884 guaA_Cterm GMP synth 77.8 1.4 3.1E-05 42.5 2.1 55 2-60 110-167 (311)
30 CHL00071 tufA elongation facto 76.9 16 0.00035 36.3 9.2 107 90-206 282-407 (409)
31 PLN03127 Elongation factor Tu; 76.0 11 0.00024 38.1 7.9 107 90-206 325-445 (447)
32 PRK00049 elongation factor Tu; 75.8 14 0.00031 36.5 8.5 109 88-206 272-394 (396)
33 PTZ00141 elongation factor 1- 74.9 18 0.0004 36.5 9.1 116 88-211 291-434 (446)
34 PRK12736 elongation factor Tu; 74.6 18 0.00038 35.8 8.8 108 90-207 272-393 (394)
35 PRK12735 elongation factor Tu; 72.9 16 0.00035 36.0 8.1 108 89-206 273-394 (396)
36 PRK05124 cysN sulfate adenylyl 72.5 25 0.00054 35.9 9.5 108 89-207 304-438 (474)
37 cd01990 Alpha_ANH_like_I This 72.0 2.6 5.6E-05 37.1 2.1 17 2-18 89-105 (202)
38 TIGR00483 EF-1_alpha translati 71.0 31 0.00068 34.2 9.6 109 90-207 287-423 (426)
39 PRK00919 GMP synthase subunit 70.9 3.7 8E-05 39.8 3.0 53 2-60 113-165 (307)
40 cd01513 Translation_factor_III 65.6 43 0.00094 25.8 7.6 32 171-203 65-102 (102)
41 PRK12317 elongation factor 1-a 62.3 37 0.00079 33.7 8.2 109 90-207 285-421 (425)
42 PRK05506 bifunctional sulfate 60.8 62 0.0013 34.0 9.9 110 89-209 300-436 (632)
43 cd00553 NAD_synthase NAD+ synt 60.4 3.6 7.8E-05 37.9 0.6 42 2-60 124-165 (248)
44 cd01712 ThiI ThiI is required 59.7 5.4 0.00012 34.5 1.6 17 2-18 97-113 (177)
45 cd03708 GTPBP_III Domain III o 55.6 24 0.00051 26.9 4.4 34 170-205 52-86 (87)
46 COG0037 MesJ tRNA(Ile)-lysidin 54.3 7.2 0.00016 36.1 1.6 18 2-19 114-131 (298)
47 cd01993 Alpha_ANH_like_II This 52.8 6.9 0.00015 33.3 1.1 18 2-19 100-117 (185)
48 PRK08349 hypothetical protein; 50.9 8.8 0.00019 34.1 1.5 17 2-18 99-115 (198)
49 PRK01565 thiamine biosynthesis 50.5 4.4 9.6E-05 40.2 -0.5 47 2-60 273-320 (394)
50 cd01986 Alpha_ANH_like Adenine 49.9 10 0.00023 29.8 1.7 18 2-19 55-72 (103)
51 PF01171 ATP_bind_3: PP-loop f 48.6 9.7 0.00021 33.2 1.4 17 2-18 90-106 (182)
52 TIGR00342 thiazole biosynthesi 47.3 11 0.00023 37.3 1.6 18 2-19 269-286 (371)
53 cd01995 ExsB ExsB is a transcr 45.7 12 0.00025 32.0 1.4 51 2-60 70-126 (169)
54 PF03143 GTP_EFTU_D3: Elongati 43.4 45 0.00098 26.5 4.4 35 171-206 64-98 (99)
55 PRK10696 tRNA 2-thiocytidine b 40.6 16 0.00034 34.0 1.5 17 2-18 125-141 (258)
56 cd01984 AANH_like Adenine nucl 40.4 18 0.0004 27.1 1.7 18 2-19 42-59 (86)
57 PF02983 Pro_Al_protease: Alph 37.9 30 0.00065 25.7 2.4 15 101-118 26-40 (62)
58 COG0050 TufB GTPases - transla 35.1 3.1E+02 0.0067 27.6 9.4 41 166-207 353-393 (394)
59 TIGR00268 conserved hypothetic 34.8 23 0.0005 32.7 1.7 18 2-19 101-118 (252)
60 PF05005 Ocnus: Janus/Ocnus fa 34.2 35 0.00076 28.5 2.5 14 196-209 62-75 (108)
61 TIGR02034 CysN sulfate adenyly 29.1 3.7E+02 0.008 26.7 9.2 65 88-162 275-343 (406)
62 PLN00043 elongation factor 1-a 24.4 3.9E+02 0.0084 27.1 8.5 111 90-208 293-431 (447)
63 TIGR00364 exsB protein. This p 22.4 47 0.001 29.3 1.3 17 2-18 105-121 (201)
64 cd01996 Alpha_ANH_like_III Thi 22.3 47 0.001 27.6 1.3 19 2-20 96-114 (154)
65 PF08022 FAD_binding_8: FAD-bi 20.1 35 0.00075 27.3 0.0 26 168-193 13-40 (105)
No 1
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=100.00 E-value=9.5e-65 Score=489.49 Aligned_cols=198 Identities=35% Similarity=0.559 Sum_probs=149.7
Q ss_pred ChhhHh-CCCcEEecCcceEEeecC--C---CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC-
Q 048403 1 MDAISS-MEFDYVASGHYANVVHSS--A---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP- 64 (300)
Q Consensus 1 ~e~a~~-lGad~VATGHYAri~~~~--~---~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp- 64 (300)
+++|++ +|||+||||||||+.... . +.++.|+.||||||||+|++++|+++|||||+++| +||+
T Consensus 108 ~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r~~D~~KDQSYfL~~l~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~ 187 (356)
T PF03054_consen 108 LEYADEGLGADYIATGHYARIEKDEKNGRYRLLRGADPKKDQSYFLSRLPQEQLSRLIFPLGELTKEEVREIAREAGLPV 187 (356)
T ss_dssp HHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE-SSTTC--GGGGTT--HHHHCCEE-TCCCS-HHHHHHHHHHCT-TT
T ss_pred HHHHHhhcCCCeeccceeEEEEeeccCCceEEEecCCCCCCceEEEEecCHHHHHhhcCCCCCCCHHHHHHHHHhcCCcc
Confidence 367888 999999999999998763 2 34789999999999999999999999999999999 5554
Q ss_pred ---------------------------CcccEEecCCCcEEeeeeCeeeeeeccccccCCC-CCceEEEEEEeCCCCEEE
Q 048403 65 ---------------------------MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLL-YIVYRYVVEKDIENNIVF 116 (300)
Q Consensus 65 ---------------------------~pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkGLgi~-g~~p~YVv~kD~~~N~V~ 116 (300)
+||+|+|.+||++||+|+|+|+|||||||||+|+ ..+||||++||+++|+||
T Consensus 188 a~k~eSq~iCFi~~~~~~~fl~~~~~~~~G~ivd~~tG~vlG~H~G~~~yTiGQRkGlgi~g~~~p~yV~~id~~~N~V~ 267 (356)
T PF03054_consen 188 AEKKESQGICFIGDGDYREFLKRYLPEKPGPIVDIDTGKVLGEHKGIHFYTIGQRKGLGIAGYGEPLYVVEIDPETNTVV 267 (356)
T ss_dssp TT-----SSTTTCCCHHHHHHCTTS----EEEEETT-S-EEEEES-CCC--TT-BTTTTTT-TSS-EEEEEEECCCTEEE
T ss_pred cCccccceEEEecCCcHHHhhhhccccccCcccccccceeeeeccCeeeEccCCCCCCCCCCCCCeEEEEEEecCCCEEE
Confidence 8999999877999999999999999999999999 469999999999999999
Q ss_pred EecCCCcccceeeEEEEcceeecCCCCCCc-c----cccc--cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEE
Q 048403 117 VSRNYYSFDKKRHLFHAGSLKLLSGLPPEK-I----SQLH--SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189 (300)
Q Consensus 117 V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~-~----~~~r--~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~a 189 (300)
|+++++++.|+++.+.++++||+.+..+.. . .++| +.+++|+++.. +++.+.|+|++|++||||||+|
T Consensus 268 Vg~g~~~~~L~~~~~~~~~~~w~~~~~~~~~~~~~~vkiR~~~~~~~~~v~~~-----~~~~~~V~f~eP~~avaPGQ~a 342 (356)
T PF03054_consen 268 VGPGYDHEDLFSREFTVEDFNWISPELPDGNPLECQVKIRYRQKPVPCTVEPI-----GDGRLRVEFDEPQRAVAPGQSA 342 (356)
T ss_dssp EEESTT-GGGEEEEEEEECEEETT-S--SSCEEEEEEESSTTS--EEEEEEE------SSS-EEEEEEEEEET--TTSEE
T ss_pred EeCCcChHHHccCEEEEEeeeeccccCcccCceEEEEEEccCCCCCCEEEEEe-----cCCeEEEEeCCCCCCCCCCcEE
Confidence 999988999999999999999998644331 1 2333 77899999876 4678999999999999999999
Q ss_pred EEEeCCEEEEeEEE
Q 048403 190 AFYQGRRCLGSGVI 203 (300)
Q Consensus 190 VfY~gd~cLGGG~I 203 (300)
|||++|+|||||+|
T Consensus 343 VfY~~d~vLGgG~I 356 (356)
T PF03054_consen 343 VFYDGDRVLGGGII 356 (356)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEC
Confidence 99999999999998
No 2
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=100.00 E-value=2.7e-57 Score=438.12 Aligned_cols=194 Identities=27% Similarity=0.389 Sum_probs=167.3
Q ss_pred hhhHhCCCcEEecCcceEEeecCC---CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC-----
Q 048403 2 DAISSMEFDYVASGHYANVVHSSA---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP----- 64 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~---~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp----- 64 (300)
++|+++|+|+||||||||+..... +.++.|..||||||||+|++++|+++|||||+++| +||+
T Consensus 107 ~~A~~~G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSyfL~~l~~~~l~~~ifPLg~~~K~eVr~~A~~~gl~~~a~k 186 (360)
T PRK14665 107 KIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKSEARAYAAERGFEKVAKK 186 (360)
T ss_pred HHHHHcCCCEEEECCccceeccCCcEEEEeecCCCCCceEEecCCCHHHHhheeccCcCCCHHHHHHHHHHCCCCccCcC
Confidence 578899999999999999854332 24789999999999999999999999999999999 4541
Q ss_pred -----------------------C-------------cccEEecCCCcEEeeeeCeeeeeeccccccCCCCCceEEEEEE
Q 048403 65 -----------------------M-------------EGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEK 108 (300)
Q Consensus 65 -----------------------~-------------pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkGLgi~g~~p~YVv~k 108 (300)
. ||+|+| .+|++||+|+|+|+|||||||||++++.+||||++|
T Consensus 187 ~eSq~iCF~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~G~iv~-~~g~~lG~H~G~~~yTiGQRkgl~i~~~~p~yV~~~ 265 (360)
T PRK14665 187 RDSLGVCFCPMDYRSFLKKCLCDESGDKNRNIYRKVERGRFLD-ESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEI 265 (360)
T ss_pred CCCCccccCCchHHHHHHHhcccccccccccccccCCCccEEc-CCCCEeEEECCEEeeecCCcccCCCCCCCceEEEEE
Confidence 2 799999 489999999999999999999999987789999999
Q ss_pred eCCCCEEEEecCCCcccceeeEEEEcceeecCCCCCCcc----ccc--ccceeeeEEEEEeeccCCCCEEEEEeCCCccc
Q 048403 109 DIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI----SQL--HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQG 182 (300)
Q Consensus 109 D~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~~----~~~--r~~~~~c~v~~~~~~~~~~~~~~V~f~eP~ra 182 (300)
|+++|+|+|++. +.|+++++.+.++||+...++... .++ |+.+++|+++.. +++.+.|+|++|++|
T Consensus 266 d~~~n~v~v~~~---~~l~~~~~~~~~~~w~~~~~~~~~~~~~~k~R~~~~~~~~~~~~~-----~~~~~~v~f~~p~~a 337 (360)
T PRK14665 266 HPETNEVVLASL---KALEKTEMWLKDWNIVNESRLLGCDDIIVKIRYRKQENHCTVTIT-----PDNLLHVQLHEPLTA 337 (360)
T ss_pred cCCCCEEEEECh---HHhcCCEEEEEeceEcCCCCCCCCeEEEEEEecCCCCcCEEEEEc-----cCCEEEEEeCCCCcc
Confidence 999999999973 578899999999999864333211 223 367789998754 456799999999999
Q ss_pred cCCCcEEEEEeCCEEEEeEEEe
Q 048403 183 LAAGQFAAFYQGRRCLGSGVIL 204 (300)
Q Consensus 183 VAPGQ~aVfY~gd~cLGGG~I~ 204 (300)
|||||+||||++|+|||||+|.
T Consensus 338 v~pGQ~~v~Y~~~~vlGgg~I~ 359 (360)
T PRK14665 338 IAEGQAAAFYKDGLLLGGGIIT 359 (360)
T ss_pred cCCCcEEEEEECCEEEEEEEEc
Confidence 9999999999999999999995
No 3
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=100.00 E-value=1.8e-57 Score=439.77 Aligned_cols=195 Identities=27% Similarity=0.396 Sum_probs=168.4
Q ss_pred hhhHhCCCcEEecCcceEEeecCC---CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC-----
Q 048403 2 DAISSMEFDYVASGHYANVVHSSA---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP----- 64 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~---~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp----- 64 (300)
+.|+++|+|+||||||||+..... +.++.|..|||||||++|++++|+++|||||+++| .||+
T Consensus 102 ~~A~~~G~~~IATGHyar~~~~~~~~~l~~g~D~~kDQsyfl~~l~~~~l~~~ifPLg~~~K~evr~~A~~~gl~~~a~k 181 (362)
T PRK14664 102 EWADKLGCAWIATGHYSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDILRRCIFPLGNYTKQTVREYLREKGYEAKSKE 181 (362)
T ss_pred HHHHHcCCCEEEECCccccccCCCeEEEEEcCCCcchHHHHHHhcCHHHHhHHhccCccCCHHHHHHHHHHcCCCCCCCC
Confidence 578899999999999999864432 24789999999999999999999999999999999 3442
Q ss_pred ----------------------------CcccEEecCCCcEEeeeeCeeeeeeccccccCCCCCceEEEEEEeCCCCEEE
Q 048403 65 ----------------------------MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVF 116 (300)
Q Consensus 65 ----------------------------~pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkGLgi~g~~p~YVv~kD~~~N~V~ 116 (300)
+||+|+|. +|++||+|+|+|+|||||||||++++.+||||++||+++|+|+
T Consensus 182 ~dSq~iCFi~~~~~~fl~~~~~~~~~~~~~G~iv~~-~G~~~G~H~G~~~yTiGQRkglgi~~~~p~yV~~~d~~~n~v~ 260 (362)
T PRK14664 182 GESMEVCFIKGDYRDFLREQCPELDTEVGPGWFVNS-EGVKLGQHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVM 260 (362)
T ss_pred CCCCcceeecCcHHHHHHHhcccccCcCCCEeEEeC-CCCEEEEECCEEEEecCCccCCCCCCCCceEEEEEcCCCCEEE
Confidence 37999995 8999999999999999999999998768999999999999999
Q ss_pred EecCCCcccceeeEEEEcceeecCCCCCCc----cccc--ccceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEEE
Q 048403 117 VSRNYYSFDKKRHLFHAGSLKLLSGLPPEK----ISQL--HSVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAA 190 (300)
Q Consensus 117 V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~----~~~~--r~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~aV 190 (300)
|++.. .|+++.+.+.++||+...++.. ..++ ++.+++|+++.. +++.+.|+|++|++||||||+||
T Consensus 261 v~~~~---~l~~~~~~~~~~~w~~~~~~~~~~~~~~k~R~~~~~~~~~v~~~-----~~~~~~v~f~~p~~avapGQ~~v 332 (362)
T PRK14664 261 LGDAE---QLKAEYMLAEQDNIVDEQELFACPDLAVRIRYRSRPIPCRVKRL-----EDGRLLVRFLAEASAIAPGQSAV 332 (362)
T ss_pred EeChh---HhcCCEEEEeccEecCCCCCCCCceEEEEEccCCCCcCEEEEEe-----cCCeEEEEeCCCCcCcCCCcEEE
Confidence 99764 6788999999999986443311 1223 367789999765 45679999999999999999999
Q ss_pred EEeCCEEEEeEEEee
Q 048403 191 FYQGRRCLGSGVILE 205 (300)
Q Consensus 191 fY~gd~cLGGG~I~~ 205 (300)
||++|+|||||+|.+
T Consensus 333 ~Y~~~~vlGgG~I~~ 347 (362)
T PRK14664 333 FYEGRRVLGGAFIAS 347 (362)
T ss_pred EEECCEEEEEEEEcc
Confidence 999999999999964
No 4
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-56 Score=421.34 Aligned_cols=205 Identities=41% Similarity=0.709 Sum_probs=179.9
Q ss_pred hhHhCCCcEEecCcceEEeecCCC------CCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC---
Q 048403 3 AISSMEFDYVASGHYANVVHSSAD------HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP--- 64 (300)
Q Consensus 3 ~a~~lGad~VATGHYAri~~~~~~------~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp--- 64 (300)
+.+++|+||||||||||++..... ..+.|..||||||||+|++++|+|+|||||+++| .|||
T Consensus 116 a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~d~~KDQt~FL~~in~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~ae 195 (377)
T KOG2805|consen 116 AIENLGYDWLATGHYARVVLEDEDNAESHLLISKDMVKDQTYFLSTINQTQLKRLLFPLGCLTKSEVKKLAKQAGFPNAE 195 (377)
T ss_pred HHHhcCCCeEEeeeeeeeecCcccCcceeEeecccccCCceeEeecccHHHHHhhhccCcccCHHHHHHHHHhcCCcccc
Confidence 456899999999999999865432 2678999999999999999999999999999999 5554
Q ss_pred --------------------------CcccEEecCCCcEEeeeeCeeeeeeccccc----cCCCCCceEEEEEEeCCCCE
Q 048403 65 --------------------------MEGIILEAETGDFLEKHRGFWFYTIGQHQE----LGLLYIVYRYVVEKDIENNI 114 (300)
Q Consensus 65 --------------------------~pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkG----Lgi~g~~p~YVv~kD~~~N~ 114 (300)
+||+|++++.|.++|.|.|+|.||||||.| +...+ +||||.+||.++|+
T Consensus 196 K~eSqGICFvgk~~~F~dFl~~yi~~~~g~Il~i~~gs~vg~h~G~h~~TIGqR~g~sqa~~~~~-g~wfV~~k~~~~n~ 274 (377)
T KOG2805|consen 196 KPESQGICFVGKIKHFSDFLQRYIGSSPGPILEIDSGSVVGNHRGIHSYTIGQRCGISQALSLYG-GPWFVSEKDTKNNV 274 (377)
T ss_pred CcccceeEEeccchhHHHHHHHhcCCCCCCeEEecCCcccccccceEEEEechhcCchhhhhccC-CceEEEEeecCCCe
Confidence 899999999999999999999999999999 44444 89999999999999
Q ss_pred EEEecCCCcccceeeEEEEcceeecCCCCCCc-c----cccc----cceeeeEEEEEeeccCCCCEEEEEeCCCccccCC
Q 048403 115 VFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK-I----SQLH----SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAA 185 (300)
Q Consensus 115 V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~-~----~~~r----~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAP 185 (300)
|||++++++++|+++.|.+++++|+...++.. . .++| +++++|+++++ +++.++|+|++|+||+||
T Consensus 275 i~i~rg~~~p~l~s~~~~i~~~kw~~~k~~~i~t~~l~c~~R~qh~~p~~~c~~~~~-----~~~~~~Ihl~~~~Raitp 349 (377)
T KOG2805|consen 275 IYICRGYNNPDLYSRIFRIGSPKWLGTKPQGIKTGALRCKVRSQHTPPLYSCKLEMS-----GDNLAVIHLDAKQRAITP 349 (377)
T ss_pred EEEEcCCCCHHHhhceEEecChhhcCcCcCcCcccceEEEEEeccCCCCccceEEec-----CCCcEEEEccchhcccCC
Confidence 99999999999999999999999998665541 1 1122 56688888876 456699999999999999
Q ss_pred CcEEEEEeCCEEEEeEEEeeeecCCCCC
Q 048403 186 GQFAAFYQGRRCLGSGVILEAWDDQGFP 213 (300)
Q Consensus 186 GQ~aVfY~gd~cLGGG~I~~~~~~~~~~ 213 (300)
||+||||+++.|||||+|.++++++.||
T Consensus 350 GQ~~~fY~~~~cLGsG~I~~v~~~~~~~ 377 (377)
T KOG2805|consen 350 GQFCAFYEDDTCLGSGVILEVNPDKCFP 377 (377)
T ss_pred CcEEEEEeCCeEeccceeeecCccccCC
Confidence 9999999999999999999999988775
No 5
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=100.00 E-value=2.3e-55 Score=421.91 Aligned_cols=196 Identities=36% Similarity=0.554 Sum_probs=172.0
Q ss_pred hhhHhCCCcEEecCcceEEeecC-C---CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC----
Q 048403 2 DAISSMEFDYVASGHYANVVHSS-A---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP---- 64 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~-~---~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp---- 64 (300)
+.|+++|+|+|||||||+..... . +.++.|..|||||||+.+++++|.+++|||++++| .|||
T Consensus 107 ~~A~~~g~~~IatGHya~d~~~~~~~~~l~rg~d~~kdqsy~L~~~~~~~l~~ii~PL~~~~K~eVr~~A~~~gl~~~~k 186 (349)
T cd01998 107 DYAKKLGADYIATGHYARIEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQLSRLIFPLGDLTKPEVREIAKELGLPVAKK 186 (349)
T ss_pred HHHHHcCcCEEEECCcCCeeecCCCceEEeecCCCCCCcceEeccCCHHHHhheeecCCCCCHHHHHHHHHHcCCCCCCC
Confidence 46888999999999999986433 1 34789999999999999999999999999999999 4553
Q ss_pred ------------------------CcccEEecCCCcEEeeeeCeeeeeeccccccCCCCCceEEEEEEeCCCCEEEEecC
Q 048403 65 ------------------------MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLYIVYRYVVEKDIENNIVFVSRN 120 (300)
Q Consensus 65 ------------------------~pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~ 120 (300)
+||+|+|. +|++||+|+|+|+|||||||||+++..+||||++||+++|+|+|+++
T Consensus 187 ~~s~~iCFi~~~~~~~fl~~~~~~~~G~i~~~-~g~~~g~H~G~~~yTiGQr~gl~~~~~~p~yV~~~d~~~n~v~v~~~ 265 (349)
T cd01998 187 KDSQGICFIGERNFRDFLKEYLPEKPGEIVDI-DGKVLGEHKGLWFYTIGQRKGLGIASGEPWYVVEKDPETNIVVVGPG 265 (349)
T ss_pred CCCCceEEecCCCHHHHHHHhcCCCCCCEECC-CCCEeeEECCEeeEecCCcccCCCCCCCcEEEEEEcCCCCEEEEECC
Confidence 78999995 79999999999999999999999986689999999999999999998
Q ss_pred CCcccceeeEEEEcceeecCCCCCCcc----cccc--cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEEEEEeC
Q 048403 121 YYSFDKKRHLFHAGSLKLLSGLPPEKI----SQLH--SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG 194 (300)
Q Consensus 121 ~~~~~L~~~~~~v~~~~Wi~~~p~~~~----~~~r--~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~aVfY~g 194 (300)
+++++|+++.+.+.++||+.+.++... .++| +.+.+|+++.. +++.+.|+|++|++||||||+||||++
T Consensus 266 ~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~-----~~~~~~v~~~~p~~~v~pGQ~~v~Y~~ 340 (349)
T cd01998 266 SDHEALYSDGLIAKDFNWIGDPPPLEPLECEVKIRYRQPPVPCTIEPL-----DDGRLEVIFDEPQRAVAPGQAAVFYDG 340 (349)
T ss_pred CCChhHhcCEEEEEccEECCCCCCCCCEEEEEEEccCCCCcCEEEEEe-----CCCeEEEEeCCCCcccCCCCEEEEEEC
Confidence 888999999999999999975543221 2333 67788998765 455799999999999999999999999
Q ss_pred CEEEEeEEE
Q 048403 195 RRCLGSGVI 203 (300)
Q Consensus 195 d~cLGGG~I 203 (300)
|+|||||+|
T Consensus 341 ~~~lggg~I 349 (349)
T cd01998 341 DRVLGGGII 349 (349)
T ss_pred CEEEeeEEC
Confidence 999999998
No 6
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=100.00 E-value=2e-55 Score=423.56 Aligned_cols=194 Identities=33% Similarity=0.558 Sum_probs=167.1
Q ss_pred hhhHhC-CCcEEecCcceEEeecCC---CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC----
Q 048403 2 DAISSM-EFDYVASGHYANVVHSSA---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP---- 64 (300)
Q Consensus 2 e~a~~l-Gad~VATGHYAri~~~~~---~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp---- 64 (300)
++|+++ |+|+||||||||+..+.. ..++.|.+|||||||+.|++++|++++|||++++| .||+
T Consensus 110 ~~a~~~~G~~~IATGHya~~~~d~~~~~l~~~~d~~kDqsy~L~~l~~~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~k 189 (352)
T TIGR00420 110 EYAAELLGNDKIATGHYARIAEIEGKSLLLRALDKNKDQSYFLYHLSHEQLAKLLFPLGELLKPEVRQIAKNAGLPTAEK 189 (352)
T ss_pred HHHHHHcCCCEEEECCcceEeCCCCcEEEEEccCCCcCcceecccCCHHHhhhhcccCCCCCHHHHHHHHHHcCCCCCCC
Confidence 567775 999999999999864432 24789999999999999999999999999999999 4553
Q ss_pred ------------------------CcccEEecCCCc-EEeeeeCeeeeeeccccccCCC-CCceEEEEEEeCCCCEEEEe
Q 048403 65 ------------------------MEGIILEAETGD-FLEKHRGFWFYTIGQHQELGLL-YIVYRYVVEKDIENNIVFVS 118 (300)
Q Consensus 65 ------------------------~pG~Ivd~e~G~-vlG~H~Gl~~YTIGQRkGLgi~-g~~p~YVv~kD~~~N~V~V~ 118 (300)
.||+|++. +|+ +||+|+|+|+|||||||||+|+ ..+||||++||+++|+|+|+
T Consensus 190 ~~Sq~iCFi~~~~~~~fl~~~~~~~~g~iv~~-~g~~~~g~H~G~~~yTiGQr~gl~i~~~~~p~yV~~~d~~~n~v~v~ 268 (352)
T TIGR00420 190 KDSQGICFIGERKFRDFLKKYLPVKPGVIITV-DGQSVIGEHDGLWFYTIGQRKGLGIGGAAEPWFVVEKDLETNELIVS 268 (352)
T ss_pred CCCCCeEEecCCCHHHHHHHhCCCCCCcEEeC-CCCEeeEEECCEEeEecCCcCCCCCCCCCCceEEEEEcCCCCEEEEe
Confidence 68999995 798 9999999999999999999998 45899999999999999999
Q ss_pred cCCCcccceeeEEEEcceeecCCCCCCcc----cccc--cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEEEEE
Q 048403 119 RNYYSFDKKRHLFHAGSLKLLSGLPPEKI----SQLH--SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192 (300)
Q Consensus 119 ~~~~~~~L~~~~~~v~~~~Wi~~~p~~~~----~~~r--~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~aVfY 192 (300)
++ ++.|+++.+.+.++||+.+.++... .++| +.+++|+++.. +++.+.|+|++|++||||||+||||
T Consensus 269 ~~--~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~k~R~~~~~~~~~~~~~-----~~~~~~v~f~~p~~~v~pGQ~~v~Y 341 (352)
T TIGR00420 269 HG--KPDLASRGLLAQQFHWLDDEPNPFEMRCTVKIRYRQVPVQCKLKLL-----DDNLIEVIFDEPQAGVTPGQSAVLY 341 (352)
T ss_pred CC--cHHHccCEEEEEeeEECCCCCCCCCeEEEEEEccCCCCcCEEEEEe-----cCCEEEEEeCCCCcccCCCcEEEEE
Confidence 86 4689999999999999964433111 2333 67789998754 4567999999999999999999999
Q ss_pred eCCEEEEeEEE
Q 048403 193 QGRRCLGSGVI 203 (300)
Q Consensus 193 ~gd~cLGGG~I 203 (300)
++|+|||||+|
T Consensus 342 ~~~~~lggg~I 352 (352)
T TIGR00420 342 KGDICLGGGII 352 (352)
T ss_pred ECCEEEEeEEC
Confidence 99999999998
No 7
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=100.00 E-value=1.6e-55 Score=422.87 Aligned_cols=193 Identities=33% Similarity=0.518 Sum_probs=168.2
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC--------
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP-------- 64 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp-------- 64 (300)
+.|+++|+|+|||||||+......+.++.|.+|||||||+.+++++|.+++|||++++| .|||
T Consensus 110 ~~A~~~g~~~IATGH~a~d~~~~~L~rg~d~~kDqsy~l~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k~~s~ 189 (346)
T PRK00143 110 EYARELGADYIATGHYARIRDGRELLRGVDPNKDQSYFLYQLTQEQLAKLLFPLGELTKPEVREIAEEAGLPVAKKKDSQ 189 (346)
T ss_pred HHHHHCCCCEEEeeeeccccccceEEEccCCCcChhhhhccCCHHHhcceeccCccCCHHHHHHHHHHcCCCcCCCCCCC
Confidence 57889999999999999875322355789999999999999999999999999999999 4553
Q ss_pred --------------------CcccEEecCCCcEEeeeeCeeeeeeccccccCCC-CCceEEEEEEeCCCCEEEEecCCCc
Q 048403 65 --------------------MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLL-YIVYRYVVEKDIENNIVFVSRNYYS 123 (300)
Q Consensus 65 --------------------~pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkGLgi~-g~~p~YVv~kD~~~N~V~V~~~~~~ 123 (300)
+||.|++. +|++||+|+|+|+|||||||||+++ ..+||||++||+++|+|+|+++
T Consensus 190 ~icf~~~~~~~~fl~~~~~~~pG~~~~~-~g~~~g~H~G~~~yTiGQr~gl~~~~~~~p~yV~~~d~~~n~v~v~~~--- 265 (346)
T PRK00143 190 GICFIGERDYRDFLKRYLPAQPGEIVDL-DGKVLGEHKGLMYYTIGQRKGLGIGGDGEPWYVVGKDPETNTVVVGQG--- 265 (346)
T ss_pred cccCCCchhHHHHHHHhcccCCCCEEcc-CCCEEEEECCEEeEecCCcCCCCCCCCCcceEEEEEcCCCCEEEEECh---
Confidence 79999995 7999999999999999999999998 4589999999999999999987
Q ss_pred ccceeeEEEEcceeecCCCCCCcc----cccc--cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEEEEEeCCEE
Q 048403 124 FDKKRHLFHAGSLKLLSGLPPEKI----SQLH--SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRC 197 (300)
Q Consensus 124 ~~L~~~~~~v~~~~Wi~~~p~~~~----~~~r--~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~c 197 (300)
++|+++.+.+.++||+...++... .++| +.+++|+++ . +++.+.|+|++|++||||||+||||++|+|
T Consensus 266 ~~l~~~~~~~~~~~w~~~~~~~~~~~~~~~~R~~~~~~~~~~~-~-----~~~~~~v~~~~p~~~v~pGQ~~v~Y~~~~~ 339 (346)
T PRK00143 266 EALYSRELIASDLNWVGGEPPEEPFECTAKIRYRQKPVPATVE-L-----EDDRVEVEFDEPQRAVTPGQAAVFYDGDRV 339 (346)
T ss_pred hHhcccEEEEEeeeecCCCCCCCCEEEEEEEccCCCCcCEEEE-E-----cCCEEEEEeCCCccccCCCcEEEEEECCEE
Confidence 578999999999999974433221 2333 677899987 3 456799999999999999999999999999
Q ss_pred EEeEEEe
Q 048403 198 LGSGVIL 204 (300)
Q Consensus 198 LGGG~I~ 204 (300)
||||+|.
T Consensus 340 lggg~I~ 346 (346)
T PRK00143 340 LGGGIIE 346 (346)
T ss_pred EEEEEEC
Confidence 9999994
No 8
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-55 Score=422.21 Aligned_cols=199 Identities=32% Similarity=0.482 Sum_probs=171.1
Q ss_pred ChhhHhCCCcEEecCcceEEeecC---CCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC----
Q 048403 1 MDAISSMEFDYVASGHYANVVHSS---ADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP---- 64 (300)
Q Consensus 1 ~e~a~~lGad~VATGHYAri~~~~---~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp---- 64 (300)
++.|+++|||+||||||||+.... .+.++.|.+|||||||++++++||+++|||||+|+| .||+
T Consensus 109 l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~~~ql~~~lFPlG~l~K~evR~iA~~~gL~~a~K 188 (356)
T COG0482 109 LDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALSQEQLERLLFPLGDLEKLEVRPIAAEKGLPTAKK 188 (356)
T ss_pred HHHHHHcCCCeEEEeeeEeeecCCcccccccCCCcccchhheecccCHHHHhhccccCCCCCHHHHHHHHHHcCCCccCc
Confidence 467888999999999999997643 356899999999999999999999999999999999 4553
Q ss_pred ------------------------CcccEEecCCCcEEeeeeCeeeeeeccccccCCCC--CceEEEEEEeCCCCEEEEe
Q 048403 65 ------------------------MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLY--IVYRYVVEKDIENNIVFVS 118 (300)
Q Consensus 65 ------------------------~pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkGLgi~g--~~p~YVv~kD~~~N~V~V~ 118 (300)
+||.|++. +|+++|+|.|+|+||||||+||+|++ .+||||++||+++|+|||+
T Consensus 189 kdS~~ICFi~~~~~~~fl~~~~p~~~G~ii~~-~G~v~g~H~G~~~yTiGQR~Gl~I~~~~~~p~yVv~kd~~~n~~~V~ 267 (356)
T COG0482 189 KDSQGICFIGERKFKDFLGRYLPAKPGEIIDK-DGKVLGEHDGLMYYTIGQRKGLGIGGLKGEPWYVVGKDLKKNRLYVG 267 (356)
T ss_pred ccCCcceecCCCCHHHHHHhhCCCCCceEEec-CCcEeeecCCEEEEecccccccCcCCCCCCCEEEEEEecccCeEEEe
Confidence 59999996 89999999999999999999999997 4799999999999999999
Q ss_pred cCCCcccceeeEEEEcceeecCCCCCCcc----cccc--cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEEEEE
Q 048403 119 RNYYSFDKKRHLFHAGSLKLLSGLPPEKI----SQLH--SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY 192 (300)
Q Consensus 119 ~~~~~~~L~~~~~~v~~~~Wi~~~p~~~~----~~~r--~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~aVfY 192 (300)
++. .|++..+.+.++||+.+.++... .++| +...+|.++.... ++..+.|.|++|++||||||++|||
T Consensus 268 ~~~---~l~~~~l~~~~~~~~~~~~~~~~~~~~~k~R~~~~~~~~~~~~~~~---~~~~~~v~f~~~~~avtpGQ~~v~Y 341 (356)
T COG0482 268 QGE---ALLSVGLIAEDLNWLDDAPPEEPLECTAKVRYRQGDEPCKVKVLSD---EDVELAVKFDEPQRAVTPGQAAVLY 341 (356)
T ss_pred cch---hheeeeeeeecccccccccCCCCceEEEEEeccCCCCceeEEEccC---CcceEEEEecCccccccCCcEEEEe
Confidence 975 78899999999999986433222 2333 5457788776632 2356679999999999999999999
Q ss_pred eCCEEEEeEEEeee
Q 048403 193 QGRRCLGSGVILEA 206 (300)
Q Consensus 193 ~gd~cLGGG~I~~~ 206 (300)
++|+|||||+|..+
T Consensus 342 ~~d~~lGgg~I~~~ 355 (356)
T COG0482 342 DGDICLGGGIIDTS 355 (356)
T ss_pred cCCEEEeeEEeecc
Confidence 99999999999864
No 9
>PRK00074 guaA GMP synthase; Reviewed
Probab=97.23 E-value=0.00022 Score=72.71 Aligned_cols=61 Identities=18% Similarity=0.368 Sum_probs=49.7
Q ss_pred hhhHhC-CCcEEecCc-ceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC
Q 048403 2 DAISSM-EFDYVASGH-YANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP 64 (300)
Q Consensus 2 e~a~~l-Gad~VATGH-YAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp 64 (300)
+.|+++ |+++||||| |..+.+..... +.+..|||++ |+.++......+++||.+++| +|||
T Consensus 309 ~~a~~~~g~~~latGhn~dD~~Et~~~~-~~~~ik~~~~-l~Gl~~~~~~~ii~PL~~l~K~EIr~~a~~~gLp 380 (511)
T PRK00074 309 EEAKKLGGVKFLAQGTLYPDVIESGGTK-KAATIKSHHN-VGGLPEDMKLKLVEPLRELFKDEVRKLGLELGLP 380 (511)
T ss_pred HHHHHccCCCEEEECCCcchhhhhcCCC-CccccccccC-ccCcChhHhcccccchhhcCHHHHHHHHHHcCCC
Confidence 457788 999999999 87765432222 5667899999 999999988899999999999 6887
No 10
>PRK00509 argininosuccinate synthase; Provisional
Probab=96.64 E-value=0.00039 Score=69.29 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=39.3
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceE---ecccCHHHHhhhcccCCCC---cc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYF---LSHLSQAQLRRLIFHLVLY---PR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYF---Ls~L~q~qL~rllFPLG~l---~K 60 (300)
+.|+++|+++||||||++ .+||++| |..+.++. .+++|+.++ +|
T Consensus 103 ~~A~~~G~~~IA~G~t~k-------------GnDq~rf~~g~~al~pel--~VisPlre~~~~tK 152 (399)
T PRK00509 103 EIARKEGADAVAHGCTGK-------------GNDQVRFELGIAALAPDL--KVIAPWREWDLKSR 152 (399)
T ss_pred HHHHHcCCCEEEeCCCcC-------------CCCHHHHHHHHHHhCCCC--eeecchhhcCCCCH
Confidence 578899999999999987 3999999 99999886 899999997 66
No 11
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=96.00 E-value=0.00095 Score=66.14 Aligned_cols=47 Identities=17% Similarity=0.051 Sum_probs=38.8
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcce-EecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTY-FLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSY-FLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|+++|+++||||||+.- .++||+ .|+.+++...-.+++||+.+.|
T Consensus 278 ~iA~~~g~~~IaTGhslgq------------vaSQtl~Nl~~i~~~~~lpilRPLi~~dK 325 (381)
T PRK08384 278 RIAKEFGAKGIVMGDSLGQ------------VASQTLENMYIVSQASDLPIYRPLIGMDK 325 (381)
T ss_pred HHHHHcCCCEEEEcccchh------------HHHHHHHHHHHHhccCCCcEEeeCCCCCH
Confidence 4678899999999999742 478887 6777777776789999999998
No 12
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=95.94 E-value=0.0067 Score=58.18 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=44.9
Q ss_pred hhhHhCC-CcEEecCcceEEe-ecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC
Q 048403 2 DAISSME-FDYVASGHYANVV-HSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP 64 (300)
Q Consensus 2 e~a~~lG-ad~VATGHYAri~-~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp 64 (300)
+.|+++| +++|||||++-=. +........+.-|+|++++ .++....-+++.||.+++| +|||
T Consensus 93 ~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~-Gl~a~~~~~vi~PL~~l~K~EVR~lar~lGLp 165 (295)
T cd01997 93 EEAKKLGLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVG-GLPEDMKLKLIEPLRDLFKDEVRELGRELGLP 165 (295)
T ss_pred HHHHHcCCCCEEEECCcccchhhhccccccccccccccccc-ccchHhhCCcccccccCcHHHHHHHHHHcCCC
Confidence 4678899 9999999997421 1111112356689999975 5666666789999999999 6887
No 13
>PRK13820 argininosuccinate synthase; Provisional
Probab=95.92 E-value=0.0021 Score=64.04 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=38.8
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCC--Ccc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVL--YPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~--l~K 60 (300)
+.|++.|+++||+||+++ .+||.+|...+....| ++++|+.+ ++|
T Consensus 103 e~A~e~G~~~IA~G~t~~-------------gnDq~rfe~~~~a~~l-~viaP~re~~ltK 149 (394)
T PRK13820 103 EVAEKEGASAIAHGCTGK-------------GNDQLRFEAVFRASDL-EVIAPIRELNLTR 149 (394)
T ss_pred HHHHHcCCCEEEECCCCC-------------cchHHHHHHhhHhhcC-eeeCchhccCCCH
Confidence 578899999999999985 6899999988877776 79999999 566
No 14
>PLN00200 argininosuccinate synthase; Provisional
Probab=95.70 E-value=0.0023 Score=63.94 Aligned_cols=43 Identities=21% Similarity=0.226 Sum_probs=38.4
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceE---ecccCHHHHhhhcccCCCCc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYF---LSHLSQAQLRRLIFHLVLYP 59 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYF---Ls~L~q~qL~rllFPLG~l~ 59 (300)
+.|++.|+++||+|||++ .+||+|| +..|.++. .+++|++++.
T Consensus 107 ~~A~~~G~~~VahG~tgk-------------GnDq~rf~~~~~al~pel--~ViaPlre~~ 152 (404)
T PLN00200 107 DIAKEVGADAVAHGATGK-------------GNDQVRFELTFFALNPEL--KVVAPWREWD 152 (404)
T ss_pred HHHHHcCCCEEEeCCcCC-------------CCcHHHHHHHHHHhCCCC--eeeCchhhcC
Confidence 578899999999999986 3899999 99999887 8999999974
No 15
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=92.55 E-value=0.94 Score=46.13 Aligned_cols=105 Identities=19% Similarity=0.071 Sum_probs=64.1
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCC---------------CCCccccc----
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL---------------PPEKISQL---- 150 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~---------------p~~~~~~~---- 150 (300)
|||-||.+.. .+ -|.+.|..++.|.+.++...+ ..+.|.+. +.|+... +.....++
T Consensus 323 G~~vai~l~l-d~-~v~~~dv~rG~Vl~~~~~~~~--~~~~~~a~-v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~ 397 (460)
T PTZ00327 323 GGLIGVGTTI-DP-TLTRADRLVGQVLGYPGKLPE--VYAEIEIQ-YYLLRRLLGVKSQDGKKATKVAKLKKGESLMINI 397 (460)
T ss_pred CCEEEEEecc-CC-CcchhhcccccEEEcCCCCCc--eeEEEEEE-EEEecccccccccccccccCCcccCCCCEEEEEe
Confidence 7777666541 11 145567788889887653222 23455443 6676431 11111111
Q ss_pred ccceeeeEEEEEeeccCCCC-EEEEEeCCCccccCCCcEEEEEe--C--CEEEEeEEEee
Q 048403 151 HSVFYNCSLTIEHCEDGGED-IAVVQLSEDDQGLAAGQFAAFYQ--G--RRCLGSGVILE 205 (300)
Q Consensus 151 r~~~~~c~v~~~~~~~~~~~-~~~V~f~eP~raVAPGQ~aVfY~--g--d~cLGGG~I~~ 205 (300)
....+.|+|... ..+ .+.++|++|. ++.+||-++|=+ + -+.+|+|+|..
T Consensus 398 gt~~~~~~i~~i-----~~~~~~~l~l~~P~-~~~~gdr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 398 GSTTTGGRVVGI-----KDDGIAKLELTTPV-CTSVGEKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred cccEEEEEEEEe-----CCCeEEEEEECccE-eccCCCEEEEEeccCCCcEEEEEEEEcC
Confidence 133456777654 233 7889999999 888999999853 2 37999999985
No 16
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=91.08 E-value=0.049 Score=46.91 Aligned_cols=54 Identities=17% Similarity=0.027 Sum_probs=31.7
Q ss_pred hhhHhCCCcEEecCcceEEeecCC---CCCCCCCCCCcceEeccc---CHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSA---DHKDKPSVKDQTYFLSHL---SQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~---~~~~~D~~KDQSYFLs~L---~q~qL~rllFPLG~l~K 60 (300)
++|+++|+++|||||++.-.-... ..++.+.. .|..+ .....-.+++||..++|
T Consensus 90 ~~a~~~~~~~i~~Gh~~dD~~e~~l~~l~~g~~~~-----~l~~~~~~~~~~~~~virPl~~~~k 149 (185)
T cd01992 90 EIAKEHGADVLLTAHHADDQAETVLMRLLRGSGLR-----GLAGMPARIPFGGGRLIRPLLGITR 149 (185)
T ss_pred HHHHHcCCCEEEEcCCcHHHHHHHHHHHHccCCcc-----cccCCCcccCCCCCeEECCCCCCCH
Confidence 467889999999999975321100 01111111 12222 22345678999999998
No 17
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=90.45 E-value=0.094 Score=48.46 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=28.5
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|+++|++.||||||+..... ||.-. .-+...++||++++|
T Consensus 122 ~~A~~~g~~~laTgh~~E~~~G--------------~~t~~---gd~~~~i~PL~~l~K 163 (250)
T TIGR00552 122 AIANKHNLLVLGTGNKSELMLG--------------YFTKY---GDGGCDIAPIGDLFK 163 (250)
T ss_pred HHHHhcCCEEEcCCcHHHHhhC--------------Ceecc---cCCccCccccCCCcH
Confidence 4678899999999999864211 11100 013446899999999
No 18
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=88.88 E-value=0.7 Score=36.62 Aligned_cols=48 Identities=21% Similarity=0.220 Sum_probs=35.8
Q ss_pred eeeEEEEEeec---cCCCCEEEEEeCCCccccCCCcEEEEEeCC--EEEEeEEE
Q 048403 155 YNCSLTIEHCE---DGGEDIAVVQLSEDDQGLAAGQFAAFYQGR--RCLGSGVI 203 (300)
Q Consensus 155 ~~c~v~~~~~~---~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd--~cLGGG~I 203 (300)
+.|++.+...+ +++...+.+.|++|. ++.+||-.++=+++ +.+|||+|
T Consensus 45 v~~ri~ll~~~~~~pg~~~~a~l~l~~pl-~~~~gdrfilR~~~~~~tiggG~V 97 (97)
T cd04094 45 VLARVVLLDRDELAPGEEALAQLRLEEPL-VALRGDRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEEEEeCCccccCCCCEEEEEEEECCcE-eecCCCeEEEeeCCCCeEEEeEEC
Confidence 55666543211 123446889999999 89999999998887 89999986
No 19
>PLN02347 GMP synthetase
Probab=88.07 E-value=0.42 Score=49.61 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=39.4
Q ss_pred CcEEecCc-ceEEeec---CCC-CCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC
Q 048403 9 FDYVASGH-YANVVHS---SAD-HKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP 64 (300)
Q Consensus 9 ad~VATGH-YAri~~~---~~~-~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp 64 (300)
++++|.|+ |..+.+. ... .+..+.-|-.-. .+.|+++++.+++|||++++| +|||
T Consensus 336 ~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~hhn-~~~l~~~~~~~ii~PL~~l~K~eVR~la~~lgl~ 404 (536)
T PLN02347 336 PAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHN-VGGLPKDMKLKLIEPLKLLFKDEVRKLGRLLGVP 404 (536)
T ss_pred CcEEccCCcccccccccCCCCCccccccceeeecc-cccChHHHHCccccchhhCcHHHHHHHHHHcCCC
Confidence 49999999 8777542 110 011334454443 599999999999999999999 6886
No 20
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=87.90 E-value=3.4 Score=40.94 Aligned_cols=104 Identities=17% Similarity=0.092 Sum_probs=60.9
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCC----------CCCCcccc----ccccee
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG----------LPPEKISQ----LHSVFY 155 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~----------~p~~~~~~----~r~~~~ 155 (300)
|||.||.+.. .+ =+-+.|...+.|.+.++...+ ..+.|.+ .+.|+.. .+.....+ +....+
T Consensus 285 G~~v~i~l~~-~~-~i~~~dv~~G~vl~~~~~~~~--~~~~f~a-~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~ 359 (406)
T TIGR03680 285 GGLVGVGTKL-DP-ALTKADALAGQVVGKPGTLPP--VWESLEL-EVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATT 359 (406)
T ss_pred CCEEEEeecc-CC-CCCHHHcccccEEEcCCCCCC--ceeEEEE-EEEEEecccCcccccccccCCCCCEEEEEEccceE
Confidence 6666665531 10 133356677888877653221 2345544 4556532 11111111 113446
Q ss_pred eeEEEEEeeccCCCCEEEEEeCCCccccCCCcEEEEE--eCC--EEEEeEEEe
Q 048403 156 NCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFY--QGR--RCLGSGVIL 204 (300)
Q Consensus 156 ~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~aVfY--~gd--~cLGGG~I~ 204 (300)
+|++... +++.+.|+|.+|. .+.+||-+++- .+. +.+|.|.|.
T Consensus 360 ~~~v~~~-----~~~~~~l~l~~p~-~~~~g~r~~~~~~~~~~~~~~g~g~~~ 406 (406)
T TIGR03680 360 VGVVTSA-----RKDEIEVKLKRPV-CAEEGDRVAISRRVGGRWRLIGYGIIK 406 (406)
T ss_pred EEEEEEc-----CCcEEEEEECCcE-EcCCCCEEEEEEecCCceEEEEEEEeC
Confidence 7887754 4567999999995 78899998884 355 799999983
No 21
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=87.49 E-value=3.2 Score=43.77 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=62.8
Q ss_pred eeccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCC-CCCCccccc----ccceeeeEEEEE
Q 048403 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG-LPPEKISQL----HSVFYNCSLTIE 162 (300)
Q Consensus 88 TIGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~-~p~~~~~~~----r~~~~~c~v~~~ 162 (300)
.-|||.+|++.+. |-..++..+.|.+.++...+ ...+. .|+.. .|......+ ....++|++...
T Consensus 232 ~aG~rval~l~g~----~~~~~i~rGdvl~~~~~~~~---~~~~~----~~l~~~~~l~~~~~~~~~~gt~~~~~~i~~l 300 (614)
T PRK10512 232 QAGQRIALNIAGD----AEKEQINRGDWLLADAPPEP---FTRVI----VELQTHTPLTQWQPLHIHHAASHVTGRVSLL 300 (614)
T ss_pred eCCCeEEEEecCC----CChhhCCCcCEEeCCCCCcc---ceeEE----EEEcCCccCCCCCEEEEEEcccEEEEEEEEc
Confidence 3488877777641 22346788888887643211 12221 12221 111111111 134467887765
Q ss_pred eeccCCCCEEEEEeCCCccccCCCcEEEEEe--CCEEEEeEEEeeeec
Q 048403 163 HCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ--GRRCLGSGVILEAWD 208 (300)
Q Consensus 163 ~~~~~~~~~~~V~f~eP~raVAPGQ~aVfY~--gd~cLGGG~I~~~~~ 208 (300)
+...+.+.|++|. .+.+||-.++=+ .-+.+|||+|....+
T Consensus 301 -----~~~~~~l~l~~p~-~~~~gdr~ilr~~s~~~tigGg~Vld~~~ 342 (614)
T PRK10512 301 -----EDNLAELVLDTPL-WLADNDRLVLRDISARNTLAGARVVMLNP 342 (614)
T ss_pred -----CCeEEEEEECCcc-cccCCCEEEEEeCCCCEEEEEEEEcccCC
Confidence 4567899999999 677899988855 568999999987653
No 22
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=86.70 E-value=0.19 Score=43.73 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=32.8
Q ss_pred hhhHhCCCcEEecCcceEEeecCC---CCCCCCCCCCcceEecccCHHH----HhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSA---DHKDKPSVKDQTYFLSHLSQAQ----LRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~---~~~~~D~~KDQSYFLs~L~q~q----L~rllFPLG~l~K 60 (300)
+.|++.|+++|+|||.+.-.-... ..++.. .+.|+.++... --.+++||.+++|
T Consensus 93 ~~a~~~g~~~i~~Gh~~~D~~e~~l~~~~~g~~-----~~~l~~~~~~~~~~~~~~iirPL~~~~k 153 (189)
T TIGR02432 93 EIAKKHGADYILTAHHADDQAETILLRLLRGSG-----LRGLSGMKPIRILGNGGQIIRPLLGISK 153 (189)
T ss_pred HHHHHcCCCEEEEcCccHHHHHHHHHHHHcCCC-----cccccCCccccccCCCCEEECCCCCCCH
Confidence 467889999999999975311000 012221 34555554321 2348899999998
No 23
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=86.15 E-value=1.6 Score=34.20 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=30.2
Q ss_pred CEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEee
Q 048403 170 DIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILE 205 (300)
Q Consensus 170 ~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~ 205 (300)
..+.+.|++|. .+.+|+..+|=++++.+|+|+|.+
T Consensus 58 ~~v~i~l~~p~-~~~~g~rf~lR~~~~tvg~G~V~~ 92 (93)
T cd03706 58 TKVTLILRRPM-VLEKGQRFTLRDGNRTIGTGLVTD 92 (93)
T ss_pred EEEEEEECCcE-EEeeCCEEEEEECCEEEEEEEEEe
Confidence 45778888999 778999999988889999999965
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=83.65 E-value=7.2 Score=38.88 Aligned_cols=47 Identities=26% Similarity=0.232 Sum_probs=35.7
Q ss_pred cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEEEE--EeCC--EEEEeEEEe
Q 048403 152 SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAF--YQGR--RCLGSGVIL 204 (300)
Q Consensus 152 ~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~aVf--Y~gd--~cLGGG~I~ 204 (300)
...++|++... +.+.+.|+|.+|. .+.+||..+| -++. +.+|-|.|.
T Consensus 361 t~~~~~~i~~i-----~~~~~~~~l~~p~-~~~~g~r~~~~~~~~~~~~~~~~~~~~ 411 (411)
T PRK04000 361 TATTVGVVTSA-----RKDEAEVKLKRPV-CAEEGDRVAISRRVGGRWRLIGYGIIK 411 (411)
T ss_pred ccEEEEEEEEc-----CCcEEEEEECCcE-ecCCCCEEEEEEecCCcEEEEEEEEeC
Confidence 33467777654 4568999999998 6779999999 3566 788988873
No 25
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=83.09 E-value=2.6 Score=32.59 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=28.3
Q ss_pred CCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEE
Q 048403 169 EDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVI 203 (300)
Q Consensus 169 ~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I 203 (300)
...+.+.|++|. .+.+|+..+|=++...+|+|+|
T Consensus 57 ~~~v~l~l~~pv-~~~~~~rf~lR~~~~tig~G~V 90 (90)
T cd03707 57 NVKMTVELIHPI-ALEKGLRFAIREGGRTVGAGVI 90 (90)
T ss_pred EEEEEEEECCcE-EEecCCEEEEecCCcEEEEEEC
Confidence 345778888998 7789999999777889999986
No 26
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=80.98 E-value=6.6 Score=38.65 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=61.0
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCC-----C-Ccc----cccccceeeeEE
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP-----P-EKI----SQLHSVFYNCSL 159 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p-----~-~~~----~~~r~~~~~c~v 159 (300)
|+|.+|.+.+.. .+|+..+.|...++. +.. .+.|. -.+.|+...+ + ... ..+....+.|++
T Consensus 272 Gd~v~l~l~~i~-----~~~i~rG~vl~~~~~--~~~-~~~f~-a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i 342 (394)
T TIGR00485 272 GDNVGLLLRGIK-----REEIERGMVLAKPGS--IKP-HTKFE-AEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSI 342 (394)
T ss_pred CCEEEEEeCCcc-----HHHCCccEEEecCCC--CCc-ceEEE-EEEEEEecCCCCCCCccccCceEEEEEecceEEEEE
Confidence 777666665411 246778888766532 111 24443 3455664321 1 111 111122356776
Q ss_pred EEEee----ccCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeee
Q 048403 160 TIEHC----EDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206 (300)
Q Consensus 160 ~~~~~----~~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~ 206 (300)
..... .+++...+.++|++|. .+.+|+-.+|=++.+.+|+|+|.++
T Consensus 343 ~~~~~~~~l~~g~~a~v~~~~~~p~-~~~~~~rfilR~~g~tv~~G~V~~v 392 (394)
T TIGR00485 343 TLPEGVEMVMPGDNVKMTVELISPI-ALEQGMRFAIREGGRTVGAGVVSKI 392 (394)
T ss_pred EecCCcceeCCCCEEEEEEEECceE-EEeECCEEEEecCCcEEEEEEEEEe
Confidence 53211 0112234678888988 7889999999887899999999865
No 27
>PLN03126 Elongation factor Tu; Provisional
Probab=80.84 E-value=12 Score=38.38 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=64.5
Q ss_pred eccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCC------CCCccc----ccccceeeeE
Q 048403 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL------PPEKIS----QLHSVFYNCS 158 (300)
Q Consensus 89 IGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~------p~~~~~----~~r~~~~~c~ 158 (300)
-|||.+|.+.+. -.+|+..+.|+..++. +. -.+.|. -.+.|+... +..... .+.....+|+
T Consensus 350 aG~~v~l~L~~i-----~~~di~rG~VL~~~~~--~~-~~~~F~-A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~ 420 (478)
T PLN03126 350 AGDNVGLLLRGI-----QKADIQRGMVLAKPGS--IT-PHTKFE-AIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGK 420 (478)
T ss_pred CCceeeeeccCC-----cHHHcCCccEEecCCC--CC-ceEEEE-EEEEEecccccCCcccccCCcEEEEEEEecEEEEE
Confidence 488888888652 2357888888877643 11 124443 345566432 111111 1123335677
Q ss_pred EEEEeec---------cCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeeee
Q 048403 159 LTIEHCE---------DGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 159 v~~~~~~---------~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~~ 207 (300)
|...... .++...+.++|++|. .+.+|+-.+|=+++..+|+|+|.+..
T Consensus 421 I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi-~~~~~~RfilR~~~~Tva~G~V~~v~ 477 (478)
T PLN03126 421 VTSIMNDKDEESKMVMPGDRVKMVVELIVPV-ACEQGMRFAIREGGKTVGAGVIQSII 477 (478)
T ss_pred EEEEecccCCCccEeCCCCEEEEEEEECCeE-EEccCCEEEEecCCceEEEEEEEEec
Confidence 6643210 011124567888887 57889999998888999999998653
No 28
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=80.18 E-value=8.1 Score=40.43 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=37.8
Q ss_pred ceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEEEEEeC-CEEEEeEEEeee
Q 048403 153 VFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQG-RRCLGSGVILEA 206 (300)
Q Consensus 153 ~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~aVfY~g-d~cLGGG~I~~~ 206 (300)
..+.|++... +.+.+.+.|++|. .+.+||.+++=++ .+.+|||.|...
T Consensus 290 ~~~~~~i~~l-----~~~~~~l~l~~P~-~~~~gd~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 290 SVTTGKISLL-----DKGIALLTLDAPL-ILAKGDKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred eEEEEEEEEc-----cCcEEEEEECCce-ecCCCCEEEEEeCCCEEEeeeEEecC
Confidence 3356777654 4568899999999 6789999999874 479999999866
No 29
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=77.79 E-value=1.4 Score=42.52 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=33.5
Q ss_pred hhhHhCC-CcEEecCcceEEeecCCCCC-C-CCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSME-FDYVASGHYANVVHSSADHK-D-KPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lG-ad~VATGHYAri~~~~~~~~-~-~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|+++| +++|||||.+-= ....+ + .+..|-.. -+..++....-.++.||.+++|
T Consensus 110 ~~A~~~g~~~~la~Gt~~dD---~~Es~~G~~~~iks~~-~~~gl~~~~~~~ii~PL~~l~K 167 (311)
T TIGR00884 110 REAKKIGDAEYLAQGTIYPD---VIESAAGTAHVIKSHH-NVGGLPEDMKLKLVEPLRELFK 167 (311)
T ss_pred HHHHHCCCCCEEEECCCChh---hhhhccChhHhhhccC-ccccCChhhcCceEEEcccCcH
Confidence 3577889 999999998631 00111 1 11122222 2445666666679999999999
No 30
>CHL00071 tufA elongation factor Tu
Probab=76.88 E-value=16 Score=36.26 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=61.5
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCC------CCCcc----cccccceeeeEE
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL------PPEKI----SQLHSVFYNCSL 159 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~------p~~~~----~~~r~~~~~c~v 159 (300)
||+.+|.+.+- -.+|+..+.|....+. +. -.+.|.+ .+.|+... +.... ..+.....+|++
T Consensus 282 Gd~v~i~l~~i-----~~~~i~~G~vl~~~~~--~~-~~~~f~a-~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i 352 (409)
T CHL00071 282 GDNVGILLRGI-----QKEDIERGMVLAKPGT--IT-PHTKFEA-QVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKI 352 (409)
T ss_pred CceeEEEEcCC-----CHHHcCCeEEEecCCC--CC-cceEEEE-EEEEEecccCCccccccCCceEEEEEcccEEEEEE
Confidence 66666666541 1257888888877642 21 1355543 34454321 11111 112233367777
Q ss_pred EEEeec---------cCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeee
Q 048403 160 TIEHCE---------DGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206 (300)
Q Consensus 160 ~~~~~~---------~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~ 206 (300)
...... .++...+.++|++|. .+.+|+-.+|=+++..+|+|.|.+.
T Consensus 353 ~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi-~~e~~~rfilR~~~~tig~G~V~~~ 407 (409)
T CHL00071 353 ESFTADDGSKTEMVMPGDRIKMTVELIYPI-AIEKGMRFAIREGGRTVGAGVVSKI 407 (409)
T ss_pred EEEcccCCCCCcEecCCCEEEEEEEECCeE-EEeeCCEEEEecCCeEEEEEEEEEe
Confidence 643210 111224678888887 5677888888888899999999865
No 31
>PLN03127 Elongation factor Tu; Provisional
Probab=75.98 E-value=11 Score=38.14 Aligned_cols=107 Identities=22% Similarity=0.247 Sum_probs=62.6
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCC-----C-Ccc----cccccceeeeEE
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP-----P-EKI----SQLHSVFYNCSL 159 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p-----~-~~~----~~~r~~~~~c~v 159 (300)
|||.||.+.+.. ..|+..+.|...++. + .-.+.|.+ .+.|+...+ + ... ..+....+.|++
T Consensus 325 Gd~v~l~L~~i~-----~~~i~rG~Vl~~~~~--~-~~~~~F~A-~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i 395 (447)
T PLN03127 325 GDNVGLLLRGLK-----REDVQRGQVICKPGS--I-KTYKKFEA-EIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKV 395 (447)
T ss_pred CCEEEEEeCCCC-----HHHCCCccEEecCCC--C-ceeEEEEE-EEEEEcccccccCcccccCceeEEEeeecceeEEE
Confidence 888888776522 246778888876532 2 22455543 344554321 1 110 111122245666
Q ss_pred EEEee----ccCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeee
Q 048403 160 TIEHC----EDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206 (300)
Q Consensus 160 ~~~~~----~~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~ 206 (300)
..... ..++...+.++|++|. .+.+|+-.+|=+++..+|+|+|.++
T Consensus 396 ~~~~~~~~l~~gd~a~v~l~~~~p~-~le~g~RfilR~~g~Tvg~G~V~~v 445 (447)
T PLN03127 396 ELPEGVKMVMPGDNVTAVFELISPV-PLEPGQRFALREGGRTVGAGVVSKV 445 (447)
T ss_pred EeccCccccCCCCEEEEEEEECceE-EEeeCCEEEEEeCCcEEEEEEEEEe
Confidence 53211 1122335778888887 6789999999887899999999875
No 32
>PRK00049 elongation factor Tu; Reviewed
Probab=75.78 E-value=14 Score=36.51 Aligned_cols=109 Identities=19% Similarity=0.168 Sum_probs=62.2
Q ss_pred eeccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCC------CCCcc----cccccceeee
Q 048403 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL------PPEKI----SQLHSVFYNC 157 (300)
Q Consensus 88 TIGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~------p~~~~----~~~r~~~~~c 157 (300)
.-|||.||.+.+.. .+|...+.|...++...+ .+.|.+ .+.++... +.... ..+....+.|
T Consensus 272 ~~Gd~v~l~l~~i~-----~~~i~~G~vl~~~~~~~~---~~~f~a-~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~ 342 (396)
T PRK00049 272 QAGDNVGALLRGIK-----REDVERGQVLAKPGSITP---HTKFEA-EVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTG 342 (396)
T ss_pred cCCCEEEEEeCCCC-----HHHCCcceEEecCCCCCc---ceEEEE-EEEEEecCcCCCCCcccCCCEEEEEEecCcEEE
Confidence 34888888776522 357888888877643211 344443 33344321 11111 1111223456
Q ss_pred EEEEEee----ccCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeee
Q 048403 158 SLTIEHC----EDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206 (300)
Q Consensus 158 ~v~~~~~----~~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~ 206 (300)
++.+... ..++...+.++|++|. .+.||+-.+|=++++.+|+|.|.+.
T Consensus 343 ~i~l~~~~~~l~~g~~a~v~i~~~~p~-~~e~~~RfilR~~g~t~~~G~V~~v 394 (396)
T PRK00049 343 VIELPEGVEMVMPGDNVEMTVELIAPI-AMEEGLRFAIREGGRTVGAGVVTKI 394 (396)
T ss_pred EEEecCCCcccCCCCEEEEEEEECceE-EEeeCCEEEEecCCcEEEEEEEEEe
Confidence 6643211 0112234677788887 6788999888777899999999865
No 33
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=74.94 E-value=18 Score=36.53 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=64.6
Q ss_pred eeccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCCC-cc----cccccceeeeEEEEE
Q 048403 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE-KI----SQLHSVFYNCSLTIE 162 (300)
Q Consensus 88 TIGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~-~~----~~~r~~~~~c~v~~~ 162 (300)
.-|||.||.+.+.. ..|+.++.|+..... .+....++|.+ .+.|+....+. .. ..+....++|++...
T Consensus 291 ~aG~~v~i~L~~i~-----~~~v~rG~vl~~~~~-~p~~~~~~f~a-~i~~l~~~~~i~~G~~~vl~~~t~~~~~~i~~i 363 (446)
T PTZ00141 291 VPGDNVGFNVKNVS-----VKDIKRGYVASDSKN-DPAKECADFTA-QVIVLNHPGQIKNGYTPVLDCHTAHIACKFAEI 363 (446)
T ss_pred CCCCEEEEEECCCC-----HHHcCCceEEecCCC-CCCccceEEEE-EEEEECCCCccCCCCeEEEEEeceEEEEEEEEE
Confidence 34787777776422 247788888876532 23222455555 66677533221 11 112223356666532
Q ss_pred eec-----------------cCCCCEEEEEeCCCccccC------CCcEEEEEeCCEEEEeEEEeeeecCCC
Q 048403 163 HCE-----------------DGGEDIAVVQLSEDDQGLA------AGQFAAFYQGRRCLGSGVILEAWDDQG 211 (300)
Q Consensus 163 ~~~-----------------~~~~~~~~V~f~eP~raVA------PGQ~aVfY~gd~cLGGG~I~~~~~~~~ 211 (300)
... .++...+.+++++|. .+. .++-.+|=+++..+|+|.|.++..+..
T Consensus 364 ~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi-~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~~ 434 (446)
T PTZ00141 364 ESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPM-CVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKEG 434 (446)
T ss_pred EEEeccccccccCCCCcEECCCCEEEEEEEECCce-EEeecccCCCCccEEEEECCCEEEEEEEEEEecCCC
Confidence 100 011123556667776 344 466777878788999999999875553
No 34
>PRK12736 elongation factor Tu; Reviewed
Probab=74.60 E-value=18 Score=35.78 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=60.0
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCC------CCCcc----cccccceeeeEE
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL------PPEKI----SQLHSVFYNCSL 159 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~------p~~~~----~~~r~~~~~c~v 159 (300)
|||.+|.+.+.. ..|...+.|...++...+ .+.|.+ .+.|+... +.... ..+......|++
T Consensus 272 Gd~v~l~l~~i~-----~~~i~~G~vl~~~~~~~~---~~~f~a-~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i 342 (394)
T PRK12736 272 GDNVGVLLRGVD-----RDEVERGQVLAKPGSIKP---HTKFKA-EVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSI 342 (394)
T ss_pred CCEEEEEECCCc-----HHhCCcceEEecCCCCCc---ceEEEE-EEEEEecccCCCCCcccCCceEEEEEccCeEEEEE
Confidence 777777665421 236778888866542211 244433 23344321 11110 111122245666
Q ss_pred EEEe----eccCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeeee
Q 048403 160 TIEH----CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 160 ~~~~----~~~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~~ 207 (300)
.... ..+++...++++|++|. .+-+|+-.+|=++.+.+|+|.|.+..
T Consensus 343 ~~~~~~~~l~~g~~a~v~l~~~~p~-~~~~~~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 343 ELPEGTEMVMPGDNVTITVELIHPI-AMEQGLKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred EecCCcceeCCCCEEEEEEEECceE-EEeeCCEEEEecCCcEEEEEEEEEee
Confidence 4321 11112234677888888 67789998887778999999998764
No 35
>PRK12735 elongation factor Tu; Reviewed
Probab=72.86 E-value=16 Score=36.02 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=61.3
Q ss_pred eccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCC---CCc---c----cccccceeeeE
Q 048403 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLP---PEK---I----SQLHSVFYNCS 158 (300)
Q Consensus 89 IGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p---~~~---~----~~~r~~~~~c~ 158 (300)
-|||.||.+.+.. ..|...+.|...++. +. -.+.|. -++.|+...+ +.. . ..+....+.|+
T Consensus 273 aGd~v~l~L~~i~-----~~~i~rG~vl~~~~~--~~-~~~~f~-a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~ 343 (396)
T PRK12735 273 AGDNVGVLLRGTK-----REDVERGQVLAKPGS--IK-PHTKFE-AEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGT 343 (396)
T ss_pred CCCEEEEEeCCCc-----HHHCCcceEEEcCCC--CC-cceEEE-EEEEEEecccCCCCCcccCCCeeEEEeccceEEEE
Confidence 3888888776521 246778888766542 11 134443 3444554211 111 1 11112235666
Q ss_pred EEEEee----ccCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeee
Q 048403 159 LTIEHC----EDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206 (300)
Q Consensus 159 v~~~~~----~~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~ 206 (300)
+..... ..++...+.++|++|. .+.+|+-.+|=++...+|+|.|.+.
T Consensus 344 i~~~~~~~~l~~g~~a~v~l~~~~p~-~~~~~~rfilR~~g~tv~~G~V~~v 394 (396)
T PRK12735 344 IELPEGVEMVMPGDNVKMTVELIAPI-AMEEGLRFAIREGGRTVGAGVVAKI 394 (396)
T ss_pred EEccCCCceeCCCCEEEEEEEECceE-EEeECCEEEEEcCCcEEEEEEEEEe
Confidence 643210 1112234778888888 6778999888887899999999865
No 36
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=72.50 E-value=25 Score=35.85 Aligned_cols=108 Identities=14% Similarity=0.083 Sum_probs=61.6
Q ss_pred eccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCCCcccc----cccceeeeEEEEEee
Q 048403 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQ----LHSVFYNCSLTIEHC 164 (300)
Q Consensus 89 IGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~~~~----~r~~~~~c~v~~~~~ 164 (300)
-|||.+|.+.. ..|+..+.|++.++.. + .-.+.|. -.+.|+...+.....+ +....++|+|.....
T Consensus 304 aG~~V~l~L~~-------~~~i~rG~VL~~~~~~-~-~~~~~f~-a~i~~l~~~~i~~G~~~~l~~gt~~~~a~i~~i~~ 373 (474)
T PRK05124 304 AGEAITLVLED-------EIDISRGDLLVAADEA-L-QAVQHAS-ADVVWMAEQPLQPGQSYDIKIAGKKTRARVDAIRY 373 (474)
T ss_pred CCCEEEEEeCC-------ccccCCccEEECCCCC-C-ccceEEE-EEEEEeCCcccCCCCeEEEEeCCCEEEEEEEEEee
Confidence 37777776652 2467888888876432 1 1245554 3466775332221111 113346677654321
Q ss_pred c----------c--C-CCC--EEEEEeCCCccccCCCcE------EEE--EeCCEEEEeEEEeeee
Q 048403 165 E----------D--G-GED--IAVVQLSEDDQGLAAGQF------AAF--YQGRRCLGSGVILEAW 207 (300)
Q Consensus 165 ~----------~--~-~~~--~~~V~f~eP~raVAPGQ~------aVf--Y~gd~cLGGG~I~~~~ 207 (300)
. + . .++ .+.+.+++|. .+.+++- .++ +++...+|+|.|.+..
T Consensus 374 ~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv-~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 374 QVDINTLTQREAENLPLNGIGLVELTFDEPL-VLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred eeccCCCcccCccccCCCCEEEEEEEECCee-ccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 0 0 0 122 3567778887 5677666 666 7788899999998754
No 37
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=71.97 E-value=2.6 Score=37.08 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.9
Q ss_pred hhhHhCCCcEEecCcce
Q 048403 2 DAISSMEFDYVASGHYA 18 (300)
Q Consensus 2 e~a~~lGad~VATGHYA 18 (300)
+.|+++|+++|+|||.+
T Consensus 89 ~~a~~~g~~~I~~G~~~ 105 (202)
T cd01990 89 EIAEELGLDVVLDGTNA 105 (202)
T ss_pred HHHHHCCCCEEEEcCcc
Confidence 46788999999999986
No 38
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=70.97 E-value=31 Score=34.19 Aligned_cols=109 Identities=16% Similarity=0.081 Sum_probs=59.8
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCCCc-c----cccccceeeeEEEEEee
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK-I----SQLHSVFYNCSLTIEHC 164 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~-~----~~~r~~~~~c~v~~~~~ 164 (300)
|||.||.+.+. -.+|+..+.|.+.+.. +....+.|.+. +.|+....+.. . ..+.....+|+|+....
T Consensus 287 G~~v~i~l~~i-----~~~~i~rG~vl~~~~~--~~~~~~~f~a~-v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~ 358 (426)
T TIGR00483 287 GDNIGFNVRGV-----SKKDIRRGDVCGHPDN--PPKVAKEFTAQ-IVVLQHPGAITVGYTPVFHCHTAQIACRFDELLK 358 (426)
T ss_pred CCEEEEEECCC-----ChhhcccceEEecCCC--CCceeeEEEEE-EEEECCCCccCCCCeEEEEecCcEEEEEEEEEEE
Confidence 77777666541 1246777888776542 22234555444 56764322211 1 12223335677653211
Q ss_pred c------------c---CCCC--EEEEEeCCCccccCC------CcEEEEEeCCEEEEeEEEeeee
Q 048403 165 E------------D---GGED--IAVVQLSEDDQGLAA------GQFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 165 ~------------~---~~~~--~~~V~f~eP~raVAP------GQ~aVfY~gd~cLGGG~I~~~~ 207 (300)
. + ..+. .+.++|++|. .+.+ ++-.+|=+++..+|+|.|....
T Consensus 359 ~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi-~~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~ 423 (426)
T TIGR00483 359 KNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPM-VIEAVKEIPPLGRFAIRDMGQTVAAGMIIDVD 423 (426)
T ss_pred EecCccccccCCCCceeCCCCEEEEEEEECCee-EEeecccCCCCccEEEEECCCEEEEEEEEEee
Confidence 0 0 0122 3556667776 4454 7778887878899999998775
No 39
>PRK00919 GMP synthase subunit B; Validated
Probab=70.90 E-value=3.7 Score=39.85 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=32.5
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|+++|+++||+||.+.=. ...++ ..|.+.. +..++...--+++.||.+++|
T Consensus 113 ~~A~~~g~~~Ia~Gtn~dD~---iE~r~--~iks~~n-v~gl~~~~~~~Ii~PL~~l~K 165 (307)
T PRK00919 113 EVAKEIGAEYLVQGTIAPDW---IESEG--GIKSHHN-VGGLPEGMVLKIVEPLRDLYK 165 (307)
T ss_pred HHHHHcCCCEEEECCCCcch---hhccC--ccccccc-ccccChhhcCCcccCchhCcH
Confidence 46788999999999875311 01111 1344433 234444333369999999999
No 40
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=65.58 E-value=43 Score=25.81 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=24.8
Q ss_pred EEEEEeCCCccccC------CCcEEEEEeCCEEEEeEEE
Q 048403 171 IAVVQLSEDDQGLA------AGQFAAFYQGRRCLGSGVI 203 (300)
Q Consensus 171 ~~~V~f~eP~raVA------PGQ~aVfY~gd~cLGGG~I 203 (300)
.+.+.|++|. .+. +|+..+|=+++..+|+|.|
T Consensus 65 ~v~l~~~~pi-~~e~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 65 IVEVELQKPV-ALETFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EEEEEECCce-EEEEhhhCCCcccEEEEeCCCEEEEEEC
Confidence 4566677887 555 8888888788788999976
No 41
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=62.34 E-value=37 Score=33.65 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=58.8
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCC-Ccc----cccccceeeeEEEEEee
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP-EKI----SQLHSVFYNCSLTIEHC 164 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~-~~~----~~~r~~~~~c~v~~~~~ 164 (300)
||+.||.+.+. -..|+..+.|...+.. .+ ...++|.+. +.|+....+ ... ..+.....+|++.....
T Consensus 285 G~~v~i~l~~~-----~~~~i~rG~vl~~~~~-~~-~~~~~f~a~-v~~l~~~~~i~~G~~~~~~~~t~~~~~~i~~i~~ 356 (425)
T PRK12317 285 GDNIGFNVRGV-----GKKDIKRGDVCGHPDN-PP-TVAEEFTAQ-IVVLQHPSAITVGYTPVFHAHTAQVACTFEELVK 356 (425)
T ss_pred CCeEEEEECCC-----CHHHccCccEecCCCC-CC-CcccEEEEE-EEEECCCCcCCCCCeEEEEEcCcEEEEEEEEEEE
Confidence 66666655431 1246778888766542 22 224556554 667643211 111 11223335677653211
Q ss_pred c-----------------cCCCCEEEEEeCCCccccCCC------cEEEEEeCCEEEEeEEEeeee
Q 048403 165 E-----------------DGGEDIAVVQLSEDDQGLAAG------QFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 165 ~-----------------~~~~~~~~V~f~eP~raVAPG------Q~aVfY~gd~cLGGG~I~~~~ 207 (300)
. .++...+.++|.+|. .+.++ +-.+|=+++..+|+|.|.++.
T Consensus 357 ~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~-~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~ 421 (425)
T PRK12317 357 KLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPL-VIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVK 421 (425)
T ss_pred EeccccccccCCCCcEECCCCEEEEEEEECCee-EEEeCCcCCCCccEEEEECCCeEEEEEEEEec
Confidence 0 011223566677876 45554 567776777899999998876
No 42
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=60.76 E-value=62 Score=34.05 Aligned_cols=110 Identities=14% Similarity=0.031 Sum_probs=61.4
Q ss_pred eccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCCCccc----ccccceeeeEEEEEee
Q 048403 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS----QLHSVFYNCSLTIEHC 164 (300)
Q Consensus 89 IGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~~~----~~r~~~~~c~v~~~~~ 164 (300)
-|||.||.+.+ .+|++.+.|.+.++.. ....+.|. -.+.|+...+..... .+....++|++.....
T Consensus 300 aG~~v~i~l~~-------~~~i~rG~vL~~~~~~--~~~~~~f~-a~i~~l~~~~~~~g~~~~l~~gt~~~~a~i~~i~~ 369 (632)
T PRK05506 300 AGQAVTLTLAD-------EIDISRGDMLARADNR--PEVADQFD-ATVVWMAEEPLLPGRPYLLKHGTRTVPASVAAIKY 369 (632)
T ss_pred CCCeEEEEecC-------ccccCCccEEecCCCC--CcceeEEE-EEEEEecccccCCCCeEEEEeCCCEEEEEEEEEEE
Confidence 36776666542 2477888888876532 22245554 344566533221111 1113335677653311
Q ss_pred ---------------ccCCCCEEEEEeCCCccccCCCcE------EEE--EeCCEEEEeEEEeeeecC
Q 048403 165 ---------------EDGGEDIAVVQLSEDDQGLAAGQF------AAF--YQGRRCLGSGVILEAWDD 209 (300)
Q Consensus 165 ---------------~~~~~~~~~V~f~eP~raVAPGQ~------aVf--Y~gd~cLGGG~I~~~~~~ 209 (300)
..++...+.+++++|. .+.+++- .+| ++++..+|+|.|....+.
T Consensus 370 ~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi-~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~ 436 (632)
T PRK05506 370 RVDVNTLERLAAKTLELNEIGRCNLSTDAPI-AFDPYARNRTTGSFILIDRLTNATVGAGMIDFALRR 436 (632)
T ss_pred EecCCCCccCCcceeCCCCEEEEEEEECCEE-eeeeccccccCceEEEEeccCCceEEEEEECccccc
Confidence 0011123567778877 5667666 667 678899999999977653
No 43
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=60.39 E-value=3.6 Score=37.91 Aligned_cols=42 Identities=10% Similarity=-0.084 Sum_probs=28.3
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|.++|+..++||||+........ ... | ....+.||++++|
T Consensus 124 ~~A~~~~~~vlgTgn~~E~~~G~~t-~~g----d------------~~~~i~Pl~~l~K 165 (248)
T cd00553 124 ALANKLGGLVLGTGNKSELLLGYFT-KYG----D------------GAADINPIGDLYK 165 (248)
T ss_pred HHHHhcCCEEEcCCcHhHHHhCCee-ccC----C------------cccCccccCCCcH
Confidence 4678899999999999866321100 001 1 1357899999999
No 44
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=59.66 E-value=5.4 Score=34.47 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=15.0
Q ss_pred hhhHhCCCcEEecCcce
Q 048403 2 DAISSMEFDYVASGHYA 18 (300)
Q Consensus 2 e~a~~lGad~VATGHYA 18 (300)
+.|+++|+++|||||.+
T Consensus 97 ~~A~~~g~~~I~~G~~~ 113 (177)
T cd01712 97 KLAEELGADAIVTGESL 113 (177)
T ss_pred HHHHHcCCCEEEEccCc
Confidence 46788999999999986
No 45
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=55.55 E-value=24 Score=26.89 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=25.9
Q ss_pred CEEEEEe-CCCccccCCCcEEEEEeCCEEEEeEEEee
Q 048403 170 DIAVVQL-SEDDQGLAAGQFAAFYQGRRCLGSGVILE 205 (300)
Q Consensus 170 ~~~~V~f-~eP~raVAPGQ~aVfY~gd~cLGGG~I~~ 205 (300)
..+.++| ..|. .+-+|+..+| +.+..+|.|+|.+
T Consensus 52 ~~v~i~f~~~p~-~~e~~grf~l-r~g~tva~G~I~~ 86 (87)
T cd03708 52 ALVRFRFLYHPE-YLREGQRLIF-REGRTKGVGEVTK 86 (87)
T ss_pred EEEEEEECCCCc-EEccCCeEEE-ECCCcEEEEEEEE
Confidence 4566775 5677 6788988888 6558999999965
No 46
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=54.32 E-value=7.2 Score=36.11 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.2
Q ss_pred hhhHhCCCcEEecCcceE
Q 048403 2 DAISSMEFDYVASGHYAN 19 (300)
Q Consensus 2 e~a~~lGad~VATGHYAr 19 (300)
+.|+++|||+|||||=+.
T Consensus 114 ~~a~~~g~~~i~tgH~~d 131 (298)
T COG0037 114 KIAKELGADKIATGHHLD 131 (298)
T ss_pred HHHHHcCCCeEEeccCcH
Confidence 467889999999999753
No 47
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=52.79 E-value=6.9 Score=33.31 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.5
Q ss_pred hhhHhCCCcEEecCcceE
Q 048403 2 DAISSMEFDYVASGHYAN 19 (300)
Q Consensus 2 e~a~~lGad~VATGHYAr 19 (300)
+.|+++|+++|+|||.+.
T Consensus 100 ~~a~~~g~~~l~~Gh~~d 117 (185)
T cd01993 100 KIAKELGADKLATGHNLD 117 (185)
T ss_pred HHHHHcCCCEEEEcCChH
Confidence 467889999999999963
No 48
>PRK08349 hypothetical protein; Validated
Probab=50.89 E-value=8.8 Score=34.07 Aligned_cols=17 Identities=6% Similarity=0.071 Sum_probs=14.2
Q ss_pred hhhHhCCCcEEecCcce
Q 048403 2 DAISSMEFDYVASGHYA 18 (300)
Q Consensus 2 e~a~~lGad~VATGHYA 18 (300)
+.|.++|+|+|||||.+
T Consensus 99 ~~A~~~g~~~I~tG~~~ 115 (198)
T PRK08349 99 RIAHEIGASAIITGDSL 115 (198)
T ss_pred HHHHHcCCCEEEEecCC
Confidence 46788999999999943
No 49
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=50.48 E-value=4.4 Score=40.20 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=29.2
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcce-EecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTY-FLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSY-FLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|++.|++.|+|||-+- ...+||. +|..++...=-.++-||.+++|
T Consensus 273 ~~A~~~g~~~IvtG~~~~------------d~~sqt~~~l~~i~~~~~~~V~rPLig~~K 320 (394)
T PRK01565 273 KIAEKRGALAIVTGESLG------------QVASQTLESMYAINAVTNLPVLRPLIGMDK 320 (394)
T ss_pred HHHHHcCCCEEEEccccc------------cccHHHHHHHHHHhhccCcEEEECCCCCCH
Confidence 357889999999999751 1223443 3332322111246789999988
No 50
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=49.87 E-value=10 Score=29.82 Aligned_cols=18 Identities=11% Similarity=0.146 Sum_probs=15.2
Q ss_pred hhhHhCCCcEEecCcceE
Q 048403 2 DAISSMEFDYVASGHYAN 19 (300)
Q Consensus 2 e~a~~lGad~VATGHYAr 19 (300)
+.|++.|+++|||||-+.
T Consensus 55 ~~a~~~g~~~i~~g~~~~ 72 (103)
T cd01986 55 RIAKEKGAETIATGTRRD 72 (103)
T ss_pred HHHHHcCCCEEEEcCCcc
Confidence 467789999999999864
No 51
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=48.61 E-value=9.7 Score=33.15 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=10.7
Q ss_pred hhhHhCCCcEEecCcce
Q 048403 2 DAISSMEFDYVASGHYA 18 (300)
Q Consensus 2 e~a~~lGad~VATGHYA 18 (300)
+.|.+.|+++|||||=+
T Consensus 90 ~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 90 EIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHHTTT-CEEE---BH
T ss_pred HhhhcccccceeecCcC
Confidence 46788999999999974
No 52
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=47.35 E-value=11 Score=37.26 Aligned_cols=18 Identities=6% Similarity=-0.010 Sum_probs=15.4
Q ss_pred hhhHhCCCcEEecCcceE
Q 048403 2 DAISSMEFDYVASGHYAN 19 (300)
Q Consensus 2 e~a~~lGad~VATGHYAr 19 (300)
+.|+++|+++|||||++.
T Consensus 269 ~~A~~~g~~~I~tG~~l~ 286 (371)
T TIGR00342 269 KVAEKEGCLAIVTGESLG 286 (371)
T ss_pred HHHHHcCCCEEEEccChH
Confidence 357889999999999974
No 53
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=45.67 E-value=12 Score=31.96 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=30.0
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEeccc------CHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHL------SQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L------~q~qL~rllFPLG~l~K 60 (300)
+.|++.|+++|+|||++.-... . .| ..-.|+..+ ....--++++||..++|
T Consensus 70 ~~a~~~g~~~i~~G~~~~d~~~---~--~~---~~~~~~~~~~~~~~~~~~~~~~v~~PL~~~~K 126 (169)
T cd01995 70 AYAEALGAEAIIIGVNAEDYSG---Y--PD---CRPEFIEAMNKALNLGTENGIKIHAPLIDLSK 126 (169)
T ss_pred HHHHHCCCCEEEEeeccCccCC---C--CC---CCHHHHHHHHHHHHhhcCCCeEEEeCcccCCH
Confidence 3567899999999999852110 0 01 111233222 12222468999999999
No 54
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=43.42 E-value=45 Score=26.46 Aligned_cols=35 Identities=9% Similarity=0.162 Sum_probs=28.8
Q ss_pred EEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeee
Q 048403 171 IAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEA 206 (300)
Q Consensus 171 ~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~ 206 (300)
.+.++|+.|. .+.+|+-.+|=+++.-+|.|+|.++
T Consensus 64 ~v~l~~~~pi-~ve~~~Rf~lR~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 64 VVELEFQKPI-CVEPFSRFILRDGGKTIAVGVVTKV 98 (99)
T ss_dssp EEEEEEEEEE-EETTTTEEEEEETTEEEEEEEEEEE
T ss_pred ccceeeccce-eeecCceEEEccCCeEEEEEEEEEe
Confidence 3566677764 7889999999999999999999874
No 55
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=40.58 E-value=16 Score=33.95 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=14.8
Q ss_pred hhhHhCCCcEEecCcce
Q 048403 2 DAISSMEFDYVASGHYA 18 (300)
Q Consensus 2 e~a~~lGad~VATGHYA 18 (300)
+.|++.|+++|||||-+
T Consensus 125 ~~a~~~g~~~Ia~GH~~ 141 (258)
T PRK10696 125 RTARELGATKIALGHHR 141 (258)
T ss_pred HHHHHcCCCEEEEcCch
Confidence 46788999999999986
No 56
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=40.43 E-value=18 Score=27.11 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.3
Q ss_pred hhhHhCCCcEEecCcceE
Q 048403 2 DAISSMEFDYVASGHYAN 19 (300)
Q Consensus 2 e~a~~lGad~VATGHYAr 19 (300)
+.+++.|+|+|++||-+.
T Consensus 42 ~~a~~~~~~~Iv~G~~~~ 59 (86)
T cd01984 42 RLAAEEGADVIILGHNAD 59 (86)
T ss_pred HHHHHcCCCEEEEcCCch
Confidence 467889999999999864
No 57
>PF02983 Pro_Al_protease: Alpha-lytic protease prodomain; InterPro: IPR004236 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The alpha-lytic protease prodomain is associated with serine peptidases, specifically the alpha-lytic endopeptidases and streptogrisin A, B, C, D and E, which are bacterial enzymes and which belong to MEROPS peptidase subfamily S1A (IPR001316 from INTERPRO). The protease precursor in Gram-negative bacterial proteases may be a general property of extracellular bacterial proteases []. The proteases are encoded with a large (166 amino acid) N-terminal pro region that is required transiently both in vivo and in vitro for the correct folding of the protease domain [, ]. The pro region also acts as a potent inhibitor of the mature enzyme []. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0005576 extracellular region; PDB: 3PRO_C 2PRO_B 4PRO_C.
Probab=37.93 E-value=30 Score=25.74 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.1
Q ss_pred ceEEEEEEeCCCCEEEEe
Q 048403 101 VYRYVVEKDIENNIVFVS 118 (300)
Q Consensus 101 ~p~YVv~kD~~~N~V~V~ 118 (300)
.-||| |+.+|.|+|-
T Consensus 26 ~~Wyv---D~~tn~VVV~ 40 (62)
T PF02983_consen 26 TSWYV---DPRTNKVVVT 40 (62)
T ss_dssp EEEEE---ECCCTEEEEE
T ss_pred ceEEE---eCCCCeEEEE
Confidence 46998 9999999995
No 58
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=35.09 E-value=3.1e+02 Score=27.59 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=34.7
Q ss_pred cCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeeee
Q 048403 166 DGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 166 ~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~~ 207 (300)
++++-.+.|++..|. ++-+|+--++-.|++-+|+|+++++.
T Consensus 353 pgdnv~~~veLi~pi-a~e~G~rFaIreGgrtvgaGvV~~i~ 393 (394)
T COG0050 353 PGDNVKMVVELIHPI-AMEEGLRFAIREGGRTVGAGVVTKII 393 (394)
T ss_pred CCCceEEEEEEeeee-ecCCCCEEEEEeCCeeeeeeEEeeec
Confidence 334556889999988 89999999999999999999998753
No 59
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=34.76 E-value=23 Score=32.75 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=15.4
Q ss_pred hhhHhCCCcEEecCcceE
Q 048403 2 DAISSMEFDYVASGHYAN 19 (300)
Q Consensus 2 e~a~~lGad~VATGHYAr 19 (300)
+.|+++|+++|+|||.+.
T Consensus 101 ~~A~~~g~~~I~~G~n~d 118 (252)
T TIGR00268 101 KEAEKRGYDVVVDGTNAD 118 (252)
T ss_pred HHHHHcCCCEEEECCCCc
Confidence 467889999999999873
No 60
>PF05005 Ocnus: Janus/Ocnus family (Ocnus); InterPro: IPR007702 This family is comprised of the Ocnus, Janus-A and Janus-B proteins. These proteins have been found to be testes specific in Drosophila melanogaster [].; PDB: 2OZX_A 2OZW_A 2NMM_C 2AI6_A 2HW4_A.
Probab=34.24 E-value=35 Score=28.53 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=10.9
Q ss_pred EEEEeEEEeeeecC
Q 048403 196 RCLGSGVILEAWDD 209 (300)
Q Consensus 196 ~cLGGG~I~~~~~~ 209 (300)
.|||||.|..-...
T Consensus 62 ~clGGGrI~hd~~~ 75 (108)
T PF05005_consen 62 ECLGGGRIEHDPDK 75 (108)
T ss_dssp EEEEEEEEEEETTT
T ss_pred EEeCCcEEEeCCCC
Confidence 39999999976543
No 61
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=29.12 E-value=3.7e+02 Score=26.70 Aligned_cols=65 Identities=18% Similarity=0.080 Sum_probs=32.8
Q ss_pred eeccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCCCccccc----ccceeeeEEEEE
Q 048403 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKISQL----HSVFYNCSLTIE 162 (300)
Q Consensus 88 TIGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~~~~~----r~~~~~c~v~~~ 162 (300)
+-|||.+|.+.. ..|+..+.|...++. +....+.|.+. +.|+...+.....++ ....++|++...
T Consensus 275 ~~G~~v~l~l~~-------~~~i~rG~vl~~~~~--~~~~~~~f~a~-i~~l~~~~i~~g~~~~l~~gt~~~~~~i~~i 343 (406)
T TIGR02034 275 RAGQAVTLTLDD-------EIDISRGDLLAAADS--APEVADQFAAT-LVWMAEEPLLPGRSYDLKLGTRKVRASVAAI 343 (406)
T ss_pred CCCCEEEEEECC-------ccccCCccEEEcCCC--CCCcceEEEEE-EEEeChhhcCCCCEEEEEeCCCEEEEEEEEE
Confidence 347777666642 246777888776643 22224555443 567653322111111 133466777643
No 62
>PLN00043 elongation factor 1-alpha; Provisional
Probab=24.35 E-value=3.9e+02 Score=27.13 Aligned_cols=111 Identities=13% Similarity=0.065 Sum_probs=58.9
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCC-Ccc----cccccceeeeEEEEE-e
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPP-EKI----SQLHSVFYNCSLTIE-H 163 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~-~~~----~~~r~~~~~c~v~~~-~ 163 (300)
||+.||.+.+.. .+|+.++.|..... +.+....++|.+ .+.|+....+ ... ..+....++|++.-. .
T Consensus 293 Gd~v~i~l~~~~-----~~~i~rG~vl~~~~-~~p~~~~~~F~A-~i~~l~~~~~i~~gy~~~~~~~t~~~~~~i~~i~~ 365 (447)
T PLN00043 293 GDNVGFNVKNVA-----VKDLKRGYVASNSK-DDPAKEAANFTS-QVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILT 365 (447)
T ss_pred CCeEEEEECCCC-----HhhCCCccEEccCC-CCCCccccEEEE-EEEEECCCCCCCCCCeEEEEEccCEEEEEEEEeEE
Confidence 777777776521 25778888876542 223222455553 4557752211 111 122233356665421 1
Q ss_pred ---e------c--c---CCCC--EEEEEeCCCccccCC------CcEEEEEeCCEEEEeEEEeeeec
Q 048403 164 ---C------E--D---GGED--IAVVQLSEDDQGLAA------GQFAAFYQGRRCLGSGVILEAWD 208 (300)
Q Consensus 164 ---~------~--~---~~~~--~~~V~f~eP~raVAP------GQ~aVfY~gd~cLGGG~I~~~~~ 208 (300)
. + + ..++ .+.+++.+|. .+.+ .+..+|=+++..+|.|+|.++..
T Consensus 366 ~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~pi-~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~ 431 (447)
T PLN00043 366 KIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPM-VVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEK 431 (447)
T ss_pred EeccCCccccccCcccccCCCEEEEEEEECCcE-EEEecccCCCCceEEEEECCCeEEEEEEEEEec
Confidence 0 0 0 0122 3445556665 3443 66777778888999999998873
No 63
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=22.45 E-value=47 Score=29.33 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=15.0
Q ss_pred hhhHhCCCcEEecCcce
Q 048403 2 DAISSMEFDYVASGHYA 18 (300)
Q Consensus 2 e~a~~lGad~VATGHYA 18 (300)
++|+++|++.|++||.+
T Consensus 105 ~~A~~~g~~~v~~G~~~ 121 (201)
T TIGR00364 105 SYAEALGAEAVITGVCE 121 (201)
T ss_pred HHHHHCCCCEEEEEecc
Confidence 46888999999999986
No 64
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=22.30 E-value=47 Score=27.63 Aligned_cols=19 Identities=5% Similarity=0.122 Sum_probs=15.8
Q ss_pred hhhHhCCCcEEecCcceEE
Q 048403 2 DAISSMEFDYVASGHYANV 20 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri 20 (300)
+.|.+.|++.|+|||.+.-
T Consensus 96 ~~A~~~g~~~il~G~~~de 114 (154)
T cd01996 96 KVALKFGIPLIITGENPAQ 114 (154)
T ss_pred HHHHHhCcCEEEeCcCHHH
Confidence 4577899999999998753
No 65
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=20.10 E-value=35 Score=27.32 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCCc--cccCCCcEEEEEe
Q 048403 168 GEDIAVVQLSEDD--QGLAAGQFAAFYQ 193 (300)
Q Consensus 168 ~~~~~~V~f~eP~--raVAPGQ~aVfY~ 193 (300)
+++.++|++..|. ....|||++-++-
T Consensus 13 ~~~~v~i~i~~~~~~~~~~pGq~v~l~~ 40 (105)
T PF08022_consen 13 PDDVVEITIPKPSSPFKWKPGQYVFLSF 40 (105)
T ss_dssp ----------------------------
T ss_pred CCCEEEEEEECCCCCCCCCCceEEEEEE
Confidence 4567889998887 6899999999985
Done!