Query 048403
Match_columns 300
No_of_seqs 129 out of 1049
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2der_A TRNA-specific 2-thiouri 100.0 1.4E-52 4.6E-57 405.4 18.6 200 2-207 125-376 (380)
2 2hma_A Probable tRNA (5-methyl 100.0 2.3E-52 7.7E-57 402.9 19.3 199 2-207 117-367 (376)
3 1vbk_A Hypothetical protein PH 97.8 8.3E-07 2.8E-11 83.2 -3.6 47 2-60 249-295 (307)
4 1kor_A Argininosuccinate synth 97.4 4.7E-06 1.6E-10 81.0 -5.1 81 2-98 101-254 (400)
5 1gpm_A GMP synthetase, XMP ami 95.2 0.0027 9.2E-08 63.3 -0.6 58 2-60 321-381 (525)
6 1vl2_A Argininosuccinate synth 94.3 0.0019 6.4E-08 63.5 -4.3 44 2-57 114-157 (421)
7 3uow_A GMP synthetase; structu 94.1 0.0078 2.7E-07 60.6 -0.5 62 2-64 350-425 (556)
8 3tqi_A GMP synthase [glutamine 92.6 0.018 6E-07 57.5 -0.6 59 2-60 324-383 (527)
9 2ywb_A GMP synthase [glutamine 91.6 0.023 8E-07 56.2 -1.1 56 3-60 302-359 (503)
10 3p52_A NH(3)-dependent NAD(+) 91.4 0.018 6.3E-07 52.1 -2.0 46 2-64 121-175 (249)
11 2dpl_A GMP synthetase, GMP syn 90.7 0.073 2.5E-06 49.4 1.3 53 2-60 114-166 (308)
12 1wxi_A NH(3)-dependent NAD(+) 90.2 0.066 2.3E-06 49.1 0.6 42 2-60 148-189 (275)
13 1k92_A Argininosuccinate synth 89.7 0.055 1.9E-06 53.6 -0.4 40 2-57 115-158 (455)
14 3fiu_A NH(3)-dependent NAD(+) 88.6 0.046 1.6E-06 49.4 -1.8 46 2-64 130-184 (249)
15 1kqp_A NAD+ synthase, NH(3)-de 87.4 0.13 4.5E-06 46.8 0.5 42 2-60 145-186 (271)
16 3bl5_A Queuosine biosynthesis 86.1 0.04 1.4E-06 47.0 -3.5 18 2-19 107-124 (219)
17 2vxo_A GMP synthase [glutamine 85.6 0.092 3.1E-06 54.4 -1.7 60 3-64 355-433 (697)
18 1f60_A Elongation factor EEF1A 83.5 4.4 0.00015 39.1 9.2 99 107-208 315-441 (458)
19 1d2e_A Elongation factor TU (E 80.1 2.7 9.4E-05 39.5 6.2 108 90-207 265-386 (397)
20 3sjy_A Translation initiation 79.1 12 0.00042 35.0 10.4 88 108-204 296-402 (403)
21 1jny_A EF-1-alpha, elongation 78.0 7.9 0.00027 36.9 8.8 96 108-207 305-428 (435)
22 1kk1_A EIF2gamma; initiation o 76.5 12 0.0004 35.2 9.4 47 152-204 359-409 (410)
23 2c78_A Elongation factor TU-A; 75.2 4.3 0.00015 38.2 6.0 108 90-207 283-404 (405)
24 1zun_B Sulfate adenylate trans 74.1 11 0.00038 35.8 8.7 93 108-204 314-433 (434)
25 3mca_A HBS1, elongation factor 71.3 4.6 0.00016 40.5 5.5 110 88-206 462-591 (592)
26 3ilv_A Glutamine-dependent NAD 68.1 0.54 1.8E-05 47.8 -2.2 42 2-60 447-488 (634)
27 1s0u_A EIF-2-gamma, translatio 66.2 29 0.00098 32.6 9.5 88 108-204 302-407 (408)
28 3q4g_A NH(3)-dependent NAD(+) 62.6 1.2 4E-05 41.1 -0.9 42 2-60 157-198 (279)
29 3e1y_E Eukaryotic peptide chai 60.6 17 0.00058 31.4 6.3 109 89-207 63-200 (204)
30 3avx_A Elongation factor TS, e 58.8 18 0.00062 40.1 7.4 108 90-207 556-677 (1289)
31 3dpi_A NAD+ synthetase; ssgcid 57.1 1.3 4.3E-05 41.1 -1.7 42 2-60 157-198 (285)
32 1xng_A NH(3)-dependent NAD(+) 56.1 1.2 4E-05 40.0 -2.0 42 2-60 120-161 (268)
33 2pg3_A Queuosine biosynthesis 53.5 4.2 0.00014 35.1 1.2 50 2-60 110-166 (232)
34 1r5b_A Eukaryotic peptide chai 51.9 15 0.0005 35.5 4.8 97 107-207 343-466 (467)
35 2elf_A Protein translation elo 48.8 22 0.00074 33.4 5.4 90 108-204 265-370 (370)
36 1wy5_A TILS, hypothetical UPF0 48.0 6.4 0.00022 36.0 1.5 53 2-60 119-174 (317)
37 3a2k_A TRNA(Ile)-lysidine synt 44.4 7.5 0.00026 37.7 1.5 54 2-60 113-172 (464)
38 1wb1_A Translation elongation 42.7 14 0.0005 35.8 3.2 110 90-208 259-395 (482)
39 3n05_A NH(3)-dependent NAD(+) 41.0 2.5 8.5E-05 42.3 -2.6 42 2-60 421-462 (590)
40 2e18_A NH(3)-dependent NAD(+) 40.0 2.8 9.5E-05 37.1 -2.2 42 2-60 117-158 (257)
41 2nz2_A Argininosuccinate synth 38.7 9.1 0.00031 37.0 1.0 17 2-18 105-121 (413)
42 3k32_A Uncharacterized protein 35.0 12 0.0004 32.0 1.0 12 8-19 101-112 (203)
43 2nmm_A 14 kDa phosphohistidine 33.0 33 0.0011 28.6 3.4 14 196-209 82-95 (135)
44 2hw4_A 14 kDa phosphohistidine 32.8 36 0.0012 28.7 3.7 14 196-209 91-104 (144)
45 2c5s_A THII, probable thiamine 31.0 18 0.00063 34.5 1.8 45 2-60 284-331 (413)
46 3j2k_7 ERF3, eukaryotic polype 29.3 2E+02 0.007 27.1 8.8 110 88-206 300-437 (439)
47 3izq_1 HBS1P, elongation facto 23.9 1.4E+02 0.0049 29.8 6.9 96 108-207 484-610 (611)
48 3p26_A Elongation factor 1 alp 20.9 2.9E+02 0.0098 26.3 8.1 97 108-207 350-476 (483)
No 1
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=100.00 E-value=1.4e-52 Score=405.41 Aligned_cols=200 Identities=29% Similarity=0.415 Sum_probs=172.4
Q ss_pred hhhHh-CCCcEEecCcceEEeecCC---CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC----
Q 048403 2 DAISS-MEFDYVASGHYANVVHSSA---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP---- 64 (300)
Q Consensus 2 e~a~~-lGad~VATGHYAri~~~~~---~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp---- 64 (300)
+.|.+ +|||+||||||++...... ..++.|..|||||||+.+++++|.+++|||++++| .||+
T Consensus 125 ~~A~~~~Gad~IatGH~a~d~~~~~~~~l~rg~~~~kdqsy~L~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~~~k 204 (380)
T 2der_A 125 EFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKK 204 (380)
T ss_dssp HHHHHTTCCSEEECCCSCEEEEETTEEEEECCSSTTTCCGGGGSSCCHHHHHHEECCGGGSCHHHHHHHHHHTTCC----
T ss_pred HHHHhhcCCCEEEEccccccccccchHHHhcccccccccceeecCCChhhcceeEccCCCCCHHHHHHHHHHcCCCCccC
Confidence 45677 9999999999999753221 23788999999999999999999999999999999 4553
Q ss_pred ------------------------CcccEEecCCCcEEeeeeCeeeeeeccccccCCCC-----CceEEEEEEeCCCCEE
Q 048403 65 ------------------------MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLY-----IVYRYVVEKDIENNIV 115 (300)
Q Consensus 65 ------------------------~pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkGLgi~g-----~~p~YVv~kD~~~N~V 115 (300)
.||.|+| .+|+++|+|.|+|+|||||||||+|++ .+||||++||+++|+|
T Consensus 205 p~s~~~cf~~~~~~~~fL~~~~~~~pG~~vd-~~g~~lg~H~g~~~yTiGQr~gl~i~~~~~~~~~p~~V~~~d~~~n~v 283 (380)
T 2der_A 205 KDSTGICFIGERKFREFLGRYLPAQPGKIIT-VDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNIL 283 (380)
T ss_dssp ------------CHHHHHHTTSCCCCCEEEE-TTCCEEEECSCSTTCCTTCCTTSCCCCCSSSTTCCEEEEEEETTTTEE
T ss_pred CCCCCccccCchHHHHHHHHhhhhCCCCEEe-eCCcEEEEecCceeeeecccccCCcCcccCCCCccEEEEEEecCCCEE
Confidence 5899999 489999999999999999999999986 4799999999999999
Q ss_pred EEecCCCcccceeeEEEEcceeecCCCCCCcc----cccc--cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEE
Q 048403 116 FVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI----SQLH--SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189 (300)
Q Consensus 116 ~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~~----~~~r--~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~a 189 (300)
+|+++++++.|+++.+.+.++||+...++... .++| +.+++|+++.. +++.+.|+|++|++||||||+|
T Consensus 284 ~v~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~k~r~~~~~~~~~~~~~-----~~~~~~v~~~~p~~~v~pGQ~~ 358 (380)
T 2der_A 284 VVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPCTVKAL-----DDDRIEVIFDEPVAAVTPGQSA 358 (380)
T ss_dssp EEEESTTCTTTCEEEEEEEEEEETTCCCCCSEEEEEEESSTTCCCEEEEEECC-----SSSCEEEEEEEEESCCCTTSEE
T ss_pred EEECCCChHHhccCEEEEeccEECCCCCCCCceEEEEEEccCCCCccEEEEEe-----cCCEEEEEECCCCcCcCCCceE
Confidence 99998888899999999999999975443321 2333 67789998643 3557999999999999999999
Q ss_pred EEEeCCEEEEeEEEeeee
Q 048403 190 AFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 190 VfY~gd~cLGGG~I~~~~ 207 (300)
|||++|+|||||+|.+..
T Consensus 359 v~Y~~~~~lggg~i~~~~ 376 (380)
T 2der_A 359 VFYNGEVCLGGGIIEQRL 376 (380)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCEEEEEEEEeccc
Confidence 999999999999998765
No 2
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.3e-52 Score=402.89 Aligned_cols=199 Identities=30% Similarity=0.515 Sum_probs=172.4
Q ss_pred hhhHhCCCcEEecCcceEEee-cCC---CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC----
Q 048403 2 DAISSMEFDYVASGHYANVVH-SSA---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP---- 64 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~-~~~---~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp---- 64 (300)
+.|+++|+|+||||||++... ... ..++.|..|||||||+.+++++|.+++|||++++| .|||
T Consensus 117 ~~A~~~G~d~IatGH~a~d~~~~~~~~~l~rg~d~~kdqsyfL~~l~~~~l~~~i~PL~~~~K~eVr~~A~~~gl~~~~k 196 (376)
T 2hma_A 117 DYAITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVRRLAEEAGLSTAKK 196 (376)
T ss_dssp HHHHTTTCSEEECCCSEEEEECSSSCEEEEECSSTTTCCGGGGTTCCHHHHTTEECTTTTCCHHHHHHHHHHTTCTTTTC
T ss_pred HHHHhCCCCEEEECcchhhhhCCCchhhhhhccccccccchhccCCChhhcCcEEecCcCCCHHHHHHHHHHcCCCcccC
Confidence 467889999999999999854 222 23688999999999999999999999999999999 4553
Q ss_pred ------------------------CcccEEecCCCcEEeeeeCeeeeeeccccccCCCC-----CceEEEEEEeCCCCEE
Q 048403 65 ------------------------MEGIILEAETGDFLEKHRGFWFYTIGQHQELGLLY-----IVYRYVVEKDIENNIV 115 (300)
Q Consensus 65 ------------------------~pG~Ivd~e~G~vlG~H~Gl~~YTIGQRkGLgi~g-----~~p~YVv~kD~~~N~V 115 (300)
.||.|++. +|+++|+|.|+|+|||||||||+|++ .+||||++||+++|+|
T Consensus 197 ~~s~~~cf~~~~~~~~fL~~~~~~~pG~~vd~-~g~~~g~H~g~~~yTiGQr~gl~i~~~~~~~~~p~~V~~~d~~~n~v 275 (376)
T 2hma_A 197 KDSTGICFIGEKNFKNFLSNYLPAQPGRMMTV-DGRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNIL 275 (376)
T ss_dssp CCCCSCTTTTTSCHHHHHHTTSCCCCEEEEET-TCCEEEEESCGGGCCTTCBSCTTTTC----CCSCEEEEEEEGGGTEE
T ss_pred CCCCCccccCchhHHHHHHHHhhcCCCCEEcC-CCCEEEEecCeeeeccCcccccCCCcccCCCCceEEEEEEecCCCEE
Confidence 58999996 79999999999999999999999986 4799999999999999
Q ss_pred EEecCCCcccceeeEEEEcceeecCCCCCCcc----cccc--cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEE
Q 048403 116 FVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKI----SQLH--SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFA 189 (300)
Q Consensus 116 ~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~~----~~~r--~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~a 189 (300)
+|+++++++.|+++.+.+.++||+...++... .++| +.+.+|+++.. ++.+.|+|++|++||||||+|
T Consensus 276 ~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~r~~~~~~~~~~~~~------~~~~~v~~~~~~~~v~pGQ~~ 349 (376)
T 2hma_A 276 YVGQGFYHDSLMSTSLEASQVHFTREMPEEFTLECTAKFRYRQPDSKVTVHVK------GEKTEVIFAEPQRAITPGQAV 349 (376)
T ss_dssp EEEESTTCGGGEEEEEEEEEEEESSCCCSSEEEEEEEESSTTSCCEEEEEEEC------SSCEEEEEEEEEECCCTTSEE
T ss_pred EEEcCCChHHhccceEEeecceecCCCCCCCCeEEEEEEccCCCCCCEEEEEe------CCEEEEEeCCCCCCCCCCceE
Confidence 99998888899999999999999975444322 2333 67789998643 347899999999999999999
Q ss_pred EEEeCCEEEEeEEEeeee
Q 048403 190 AFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 190 VfY~gd~cLGGG~I~~~~ 207 (300)
|||+||+|||||+|.+..
T Consensus 350 v~Y~~~~~lggg~i~~~~ 367 (376)
T 2hma_A 350 VFYDGEECLGGGLIDNAY 367 (376)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEeCCEEEeeEEEeeec
Confidence 999999999999999765
No 3
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=97.80 E-value=8.3e-07 Score=83.20 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=40.9
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|+++|||+||||||+. ..+||||+|+.+++.+..+++|||++++|
T Consensus 249 ~~A~~~ga~~I~tG~~~~------------~~~~qt~~l~~~~~~~~~~vl~PL~~~~K 295 (307)
T 1vbk_A 249 KLIRDFGVKGVIKGLRPN------------DLNSEVSEITEDFKMFPVPVYYPLIALPE 295 (307)
T ss_dssp HHHHHHTCCEEECCCCGG------------GCCTTCHHHHHHHHHCSSCEECHHHHSCH
T ss_pred HHHHHcCCCEEEECcccc------------hhccccHHHhhhccCcCCeEEEccCCCCH
Confidence 468889999999999973 12589999999998888899999999998
No 4
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=97.37 E-value=4.7e-06 Score=80.97 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=60.5
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceE---ecccCHHHHhhhcccCCCC---cc---------CCCC--
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYF---LSHLSQAQLRRLIFHLVLY---PR---------LTIP-- 64 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYF---Ls~L~q~qL~rllFPLG~l---~K---------~gLp-- 64 (300)
+.|++.|+|+|||||++. .+||++| +..+.++ -++++||.++ +| .|||
T Consensus 101 ~~A~~~G~~~IatG~~~d-------------~nDq~~f~~g~~~l~p~--l~ii~PL~~~~~~tK~eI~~ya~~~gip~~ 165 (400)
T 1kor_A 101 RIAEEEGAEAIAHGATGK-------------GNDQVRFELTAYALKPD--IKVIAPWREWSFQGRKEMIAYAEAHGIPVP 165 (400)
T ss_dssp HHHHHHTCSEEECCCCTT-------------SSHHHHHHHHHHHHCTT--CEEECGGGTCCCCSHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCCEEEECCCCC-------------cccHHHHHHHHHhcCCC--CEEEEeecccccCCHHHHHHHHHHcCCCcc
Confidence 467888999999999864 4688887 4444433 2679999988 77 3443
Q ss_pred -------------------------------------------------------CcccEEecCCCcEEeeeeCee-eee
Q 048403 65 -------------------------------------------------------MEGIILEAETGDFLEKHRGFW-FYT 88 (300)
Q Consensus 65 -------------------------------------------------------~pG~Ivd~e~G~vlG~H~Gl~-~YT 88 (300)
+.|.++.. ||+.++.|..+. ++|
T Consensus 166 ~~~~~pys~d~nllg~s~e~~~Led~~~~~p~~~~~~~~~p~~~~~~~~~~~i~f~~g~~v~~-~g~~~~~~~li~~ln~ 244 (400)
T 1kor_A 166 VTQEKPYSMDANLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAV-NGERLSPAALLQRLNE 244 (400)
T ss_dssp -----CCEEEECSSCEEEESGGGGCTTSCCCTTCCSSSCCGGGSCSSCEEEEEEEETTEEEEE-TTEECCHHHHHHHHHH
T ss_pred cCCCCCCcCcchhcccchhhhHHHhHHhcCCcccceeecChhHCCCCceEEEEEeecCceEec-cCccCCHHHHHHHHHH
Confidence 22556664 888899999888 799
Q ss_pred eccccccCCC
Q 048403 89 IGQHQELGLL 98 (300)
Q Consensus 89 IGQRkGLgi~ 98 (300)
+|+|.|+|..
T Consensus 245 ~~~~~GiGr~ 254 (400)
T 1kor_A 245 IGGRHGVGRV 254 (400)
T ss_dssp HHHHTTCCEE
T ss_pred HHHhcCCChh
Confidence 9999988753
No 5
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=95.21 E-value=0.0027 Score=63.27 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=29.1
Q ss_pred hhhHhC-CCcEEecCc-ceEEeecCC-CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSM-EFDYVASGH-YANVVHSSA-DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~l-Gad~VATGH-YAri~~~~~-~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|+++ |+++||||| |..+.+... ..++.+..|++.+ |+.++....-++++||.+++|
T Consensus 321 ~~A~~~~g~~~l~~Gt~~~D~~E~~~~~~~~s~~iks~~~-l~gl~~~~~~~~i~PL~~l~K 381 (525)
T 1gpm_A 321 EEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-VGGLPKEMKMGLVEPLKELFK 381 (525)
T ss_dssp HHHHHSSSEEEEECCCCHHHHHHTTC-----------------------CCEEECTTTTCCH
T ss_pred HHHHhcCCCCEEEeCCCCcchhhhcCcccccccccccccc-ccccccccCCcEEehhhcCCH
Confidence 457788 999999998 776543311 1245677899998 788888776789999999999
No 6
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=94.30 E-value=0.0019 Score=63.47 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=28.5
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCC
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVL 57 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~ 57 (300)
+.|+++|||+||||||++ +.|..+.+.+|.+. .++ .+++|||++
T Consensus 114 ~~A~~~Gad~IA~G~~~k---------gnDq~rf~~~~~al-~p~--~~IiaPl~d 157 (421)
T 1vl2_A 114 EIAEKEGAQYVAHGATGK---------GNDQVRFELTYAAL-NPN--LKVISPWKD 157 (421)
T ss_dssp HHHHHHTCSEEECCCCTT---------SSHHHHHHHHHHHH-CTT--SEEECGGGC
T ss_pred HHHHHcCCCEEEECCeeC---------CCChHHHHHHHHhc-CCC--CeEEcccCc
Confidence 578889999999999973 11222233333322 211 389999999
No 7
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=94.05 E-value=0.0078 Score=60.58 Aligned_cols=62 Identities=15% Similarity=0.360 Sum_probs=30.8
Q ss_pred hhhHhCCC----cEEecCc-ceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC
Q 048403 2 DAISSMEF----DYVASGH-YANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP 64 (300)
Q Consensus 2 e~a~~lGa----d~VATGH-YAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp 64 (300)
+.|+++|+ |++|||| |.-+.+........+..|++.| +..++....-++++||++++| +|||
T Consensus 350 ~~A~~~~~~~~~~~la~Gt~y~D~ies~~~~g~~~~iks~~n-~~gl~~~~~~~li~PL~~l~K~EVr~la~~lGlp 425 (556)
T 3uow_A 350 KAVNNIDIDINKTFLLQGTLYPDIIESKCSKNLSDTIKTHHN-VGGLPKNLKFKLFEPFKYLFKDDVKTLSRELNLP 425 (556)
T ss_dssp HHHHTTCCCGGGEEEECCCCHHHHHHHSCC--------------------CCCEEECTTTTCCHHHHHHHHHTTTCC
T ss_pred HHHHHcCCcccccccccCccChHHHhhcccccccceeccccc-ccccccccccceEeecccCcHHHHHHHHHHcCCC
Confidence 35677886 9999998 4433222111123667899999 566777766779999999999 7887
No 8
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=92.64 E-value=0.018 Score=57.46 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=26.9
Q ss_pred hhhHhCCCcEEecCc-ceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGH-YANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGH-YAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|+++|+++||||| |..+.+......+....-.-.++|+.++....-++++||.+++|
T Consensus 324 ~~A~~~g~~~la~Gh~~dD~~Et~~~~~g~~~~ik~~~~l~gl~~~~~~~iirPL~~l~K 383 (527)
T 3tqi_A 324 EQAKKLNVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHNVGGLPLNMELKLIEPLRELFK 383 (527)
T ss_dssp HTTTTTTCCEEECCCCHHHHHCC--------------------------CEECTTTTCCH
T ss_pred HHHHHcCCCEEEccccCCccccccccCCChhheeeeecccccCcccccCccccchhcCCH
Confidence 357788999999999 65553221111110000111246888888777889999999999
No 9
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=91.61 E-value=0.023 Score=56.16 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=30.4
Q ss_pred hhHhC-CCcEEecCc-ceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 3 AISSM-EFDYVASGH-YANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 3 ~a~~l-Gad~VATGH-YAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
.|+++ |+++||||| |....+.. .....+..|++.+ |..++...--++++||.+++|
T Consensus 302 ~A~~~~g~~~la~G~~~~D~~Et~-~~g~~~~iks~~~-l~~l~~~~~~~ii~PL~~l~K 359 (503)
T 2ywb_A 302 VARERGPFRFLAQGTLYPDVIESA-GGHGAAKIKSHHN-VGGLPEDLEFELLEPFRLLFK 359 (503)
T ss_dssp HHHHHCCCSEEECCCCHHHHHC-------------------CCCSSCCCEEECTTTTCCH
T ss_pred HHHhcCCCCEEEECCcCccchhhc-cCCcccccccccc-cccccccccCceEehhhcCCH
Confidence 46777 999999999 76543221 1023456677776 666665544579999999999
No 10
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=91.39 E-value=0.018 Score=52.10 Aligned_cols=46 Identities=7% Similarity=-0.065 Sum_probs=32.9
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP 64 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp 64 (300)
+.|.++|+..++|||++.. ++++.+........++||++++| .|+|
T Consensus 121 ~~A~~~g~~vl~tgn~se~-----------------~~g~~t~~gd~~~~i~PL~~l~K~eV~~la~~~gip 175 (249)
T 3p52_A 121 DYSALKNSLVIGTSNKSEL-----------------LLGYGTIYGDLACAFNPIGSLYKSEIYALAKYLNLH 175 (249)
T ss_dssp HHHHHTTEEEBCCCCHHHH-----------------HHTCSCTTTTTCCSEETTTTSCHHHHHHHHHHTTCC
T ss_pred HHHHHCCCeEEeCCCHHHH-----------------HccchhhhccccCccccccCCcHHHHHHHHHHcCCc
Confidence 4678899999999997543 23333333334468999999999 6887
No 11
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=90.68 E-value=0.073 Score=49.38 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=26.7
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|+++|+++|||||++.=. .... ...|.+++ ++.++...--.++.||.+++|
T Consensus 114 ~~A~~~g~~~la~Gh~~dD~---~Et~--~~iks~~~-~~~l~~~~~~~virPL~~l~K 166 (308)
T 2dpl_A 114 EVAKKIGAEYLIQGTIAPDW---IESQ--GKIKSHHN-VGGLPEKLNLKLIEPLRDLYK 166 (308)
T ss_dssp HHHHHHTCSEEECCCCCC---------------------------CCCEEECTTTTCCH
T ss_pred HHHHHcCcCEEEECCCCccc---hhhc--cchhhhhc-cccCCccCCCeEEEEcccCCH
Confidence 35778899999999986210 0011 13555554 344555444579999999999
No 12
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=90.23 E-value=0.066 Score=49.09 Aligned_cols=42 Identities=14% Similarity=-0.073 Sum_probs=28.2
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
..|.++|+..++||||+........ ...| ....+|||++++|
T Consensus 148 ~~A~~~g~lvlgTgn~~E~~~Gy~t-~~gd----------------~~~~~~PL~~l~K 189 (275)
T 1wxi_A 148 SIAGMTSGVVVGTDHAAEAITGFFT-KYGD----------------GGTDINPLYRLNK 189 (275)
T ss_dssp HHHHHTTEEEBCCCCHHHHTTTCSC-TTTT----------------TCCSBCTTTTCCH
T ss_pred HHHHHCCCEEEECccHHHHccCccc-ccCC----------------CccceeeccCCCH
Confidence 4567889999999999875211000 1112 3456999999999
No 13
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=89.70 E-value=0.055 Score=53.57 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=27.8
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcc----eEecccCHHHHhhhcccCCC
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQT----YFLSHLSQAQLRRLIFHLVL 57 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQS----YFLs~L~q~qL~rllFPLG~ 57 (300)
+.|++.|||+|||||++ ...||. |+++ +.++ -++++|+.+
T Consensus 115 e~A~e~Gad~IAtGht~-------------kgnDq~rf~~~~~a-l~p~--l~viaPlr~ 158 (455)
T 1k92_A 115 AAMKEDGVNIWGDGSTY-------------KGNDIERFYRYGLL-TNAE--LQIYKPWLD 158 (455)
T ss_dssp HHHHHTTCCEEECCCCT-------------TSSHHHHHHHHHHH-HCTT--CEEECGGGC
T ss_pred HHHHHcCCCEEEECCcC-------------CCCCHHHHHHHHHh-cCCC--CEEECeecc
Confidence 56888999999999985 124666 3333 2222 468999998
No 14
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}
Probab=88.58 E-value=0.046 Score=49.40 Aligned_cols=46 Identities=11% Similarity=0.000 Sum_probs=31.3
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc---------CCCC
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR---------LTIP 64 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K---------~gLp 64 (300)
+.|.++|+..++||||+..........+ | ....++||++++| +|||
T Consensus 130 ~~A~~~g~~vl~TGn~sE~~~G~~t~~g-d----------------~~~~i~PL~~l~K~eVr~lA~~lglp 184 (249)
T 3fiu_A 130 AYAQQYNRIVIGTDNACEWYMGYFTKFG-D----------------GAADILPLVNLKKSQVFELGKYLDVP 184 (249)
T ss_dssp HHHHHHTEEEBCCCCHHHHHHTCSCTTT-T----------------TCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHcCCEEEECCCHHHHhcCchhccC-C----------------CCcceeecccCcHHHHHHHHHHcCCc
Confidence 4677889999999999854311111111 1 2348999999999 6887
No 15
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A
Probab=87.42 E-value=0.13 Score=46.79 Aligned_cols=42 Identities=12% Similarity=-0.050 Sum_probs=27.6
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
..|.+.|+..++||||+........ ...| ....+|||++++|
T Consensus 145 ~~A~~~g~lvl~tgn~~E~~~Gy~t-~~gd----------------~~~~~~Pl~~l~K 186 (271)
T 1kqp_A 145 AIGGQEGLLVLGTDHAAEAVTGFFT-KYGD----------------GGADLLPLTGLTK 186 (271)
T ss_dssp HHHHHHTCEEBCCCCHHHHTTTCSC-TTTT----------------TCCSBCTTTTCCH
T ss_pred HHHHHCCCEEEECccHHHhccCCcc-cccc----------------ccccccccccCCH
Confidence 3566789999999999865211000 0112 3455999999999
No 16
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=86.06 E-value=0.04 Score=47.05 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=14.5
Q ss_pred hhhHhCCCcEEecCcceE
Q 048403 2 DAISSMEFDYVASGHYAN 19 (300)
Q Consensus 2 e~a~~lGad~VATGHYAr 19 (300)
+.|++.|+++|+|||++.
T Consensus 107 ~~a~~~g~~~i~tG~~~d 124 (219)
T 3bl5_A 107 ILAYQIGARHIITGVCET 124 (219)
T ss_dssp HHHHHHTCSEEECCCCC-
T ss_pred HHHHHcCCCEEEEecccc
Confidence 457788999999999864
No 17
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=85.63 E-value=0.092 Score=54.37 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=40.9
Q ss_pred hhHhCCCc----EEecCcceEEeecCC---CCCCCCCCCCc---ceEecccCHHHHhhhcccCCCCcc---------CCC
Q 048403 3 AISSMEFD----YVASGHYANVVHSSA---DHKDKPSVKDQ---TYFLSHLSQAQLRRLIFHLVLYPR---------LTI 63 (300)
Q Consensus 3 ~a~~lGad----~VATGHYAri~~~~~---~~~~~D~~KDQ---SYFLs~L~q~qL~rllFPLG~l~K---------~gL 63 (300)
.|+++|++ +|||||++.-.-... ..++.+..||| +||+..+ ....++++||.+++| +||
T Consensus 355 ~A~~~g~~~~~~~LatG~~~~D~iEs~~~~l~~g~~~iks~~nv~g~~~~~--~~~~~~i~PL~~L~K~EVr~la~~lGl 432 (697)
T 2vxo_A 355 VIGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKL--REEGKVIEPLKDFHKDEVRILGRELGL 432 (697)
T ss_dssp HHHHTCCCTTSEEEECCCSSCCSBCCHHHHHHSCCCGGGSCCSSCHHHHHH--HHTTCEECGGGGSCHHHHHHHHHHTTC
T ss_pred HHHHcCCCcccEEEEEeccChhhhhhhhhhhhcCccccccccccchhhHHh--ccCCEEEEecccCCHHHHHHHHHHcCC
Confidence 46788988 999999874210000 12456778998 7776433 233579999999999 688
Q ss_pred C
Q 048403 64 P 64 (300)
Q Consensus 64 p 64 (300)
|
T Consensus 433 P 433 (697)
T 2vxo_A 433 P 433 (697)
T ss_dssp C
T ss_pred C
Confidence 6
No 18
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=83.49 E-value=4.4 Score=39.11 Aligned_cols=99 Identities=17% Similarity=0.057 Sum_probs=58.0
Q ss_pred EEeCCCCEEEEecCCCcccceeeEEEEcceeecCC-CCCCcc----cccccceeeeEEEEEee-----------------
Q 048403 107 EKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG-LPPEKI----SQLHSVFYNCSLTIEHC----------------- 164 (300)
Q Consensus 107 ~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~-~p~~~~----~~~r~~~~~c~v~~~~~----------------- 164 (300)
.+|+..+.|+..++.+ +....+.|.+ .+.|+.. .+.... ..+....++|++.....
T Consensus 315 ~~~i~rG~vl~~~~~~-~~~~~~~f~a-~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l 392 (458)
T 1f60_A 315 VKEIRRGNVCGDAKND-PPKGCASFNA-TVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFL 392 (458)
T ss_dssp TTTSCTTCEEEETTSS-CCCCCSEEEE-EEEECSCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCB
T ss_pred ccccCceeEEecCCCC-CCceeeEEEE-EEEEeCCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCcccc
Confidence 4678888888876532 2222455544 4567752 222211 12223446777753210
Q ss_pred ccCCCCEEEEEeCCCccccCCCc------EEEEEeCCEEEEeEEEeeeec
Q 048403 165 EDGGEDIAVVQLSEDDQGLAAGQ------FAAFYQGRRCLGSGVILEAWD 208 (300)
Q Consensus 165 ~~~~~~~~~V~f~eP~raVAPGQ------~aVfY~gd~cLGGG~I~~~~~ 208 (300)
..++...+.++|.+|. ++.+++ ..+|=+++.-+|+|+|.+...
T Consensus 393 ~~g~~~~v~~~~~~p~-~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~ 441 (458)
T 1f60_A 393 KSGDAALVKFVPSKPM-CVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 441 (458)
T ss_dssp CTTCEEEEEEEESSCC-CCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEEECCeE-EEecCccCCCCCcEEEEECCeEEEEEEEEeecc
Confidence 0111124677888876 566777 777778889999999998874
No 19
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=80.07 E-value=2.7 Score=39.54 Aligned_cols=108 Identities=14% Similarity=0.166 Sum_probs=62.0
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCC------CCCcc----cccccceeeeEE
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL------PPEKI----SQLHSVFYNCSL 159 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~------p~~~~----~~~r~~~~~c~v 159 (300)
||+.|+.+.+. -..|+..+.++..++. +. -.+.|. ..+.|+... +.... ..+....+.|++
T Consensus 265 G~~v~~~l~~i-----~~~~i~~G~~l~~~~~--~~-~~~~f~-a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i 335 (397)
T 1d2e_A 265 GDNLGALVRGL-----KREDLRRGLVMAKPGS--IQ-PHQKVE-AQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRI 335 (397)
T ss_dssp TCEEEEEESSC-----CGGGCCTTCEEESTTS--CC-CEEEEE-EEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEE
T ss_pred CCceEEEeccc-----chhccCceeEEeCCCC--CC-cccEEE-EEEEEeccccccCccccCCCCEEEEEEecCEEEEEE
Confidence 55555544431 1357888888887653 21 133443 345676532 11111 112233356776
Q ss_pred EEEee----ccCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeeee
Q 048403 160 TIEHC----EDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 160 ~~~~~----~~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~~ 207 (300)
.+... ..++...+.++|.+|. .+.+|+..+|=++.+.+|+|+|.+..
T Consensus 336 ~l~~~~~~l~~~~~~~v~~~~~~p~-~~~~~~r~~lr~~~~ti~~G~i~~~~ 386 (397)
T 1d2e_A 336 ILPPGKELAMPGEDLKLTLILRQPM-ILEKGQRFTLRDGNRTIGTGLVTDTP 386 (397)
T ss_dssp ECCSSCCCBCTTCEEEEEEEEEEEE-CCCTTCEEEEEETTEEEEEEEEEECC
T ss_pred EEcCCcccccCCCEEEEEEEECCeE-EEccCCeEEEEeCCeEEEEEEEeecc
Confidence 63210 0112235677888886 56789999998888999999998765
No 20
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=79.07 E-value=12 Score=35.04 Aligned_cols=88 Identities=16% Similarity=-0.013 Sum_probs=52.4
Q ss_pred EeCCCCEEEEecCCCcccceeeEEEEcceeecCC----------CCCCccccc----ccceeeeEEEEEeeccCCCCEEE
Q 048403 108 KDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG----------LPPEKISQL----HSVFYNCSLTIEHCEDGGEDIAV 173 (300)
Q Consensus 108 kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~----------~p~~~~~~~----r~~~~~c~v~~~~~~~~~~~~~~ 173 (300)
.|...+.|...++...+. .+.|. ..+.|+.. .+.....++ ....+.|+|... .++.+.
T Consensus 296 ~d~~~G~vl~~~~~~~~~--~~~~~-a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~-----~~~~~~ 367 (403)
T 3sjy_A 296 ADNLLGSIITLADAEVPV--LWNIR-IKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSV-----KKDEIE 367 (403)
T ss_dssp GGTTTTCEEEETTCCCCE--EEEEE-EEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEE-----CSSEEE
T ss_pred hhhccccEEeCCCCCCcc--eeEEE-EEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEe-----cCceEE
Confidence 466777887776542211 23343 34667652 222111111 133466777655 356899
Q ss_pred EEeCCCccccCCCc-EEEE-EeCC---EEEEeEEEe
Q 048403 174 VQLSEDDQGLAAGQ-FAAF-YQGR---RCLGSGVIL 204 (300)
Q Consensus 174 V~f~eP~raVAPGQ-~aVf-Y~gd---~cLGGG~I~ 204 (300)
+.|++|. .+.+|| -.++ .+.+ +++|.|.|.
T Consensus 368 ~~l~~p~-~~~~g~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 368 VELRRPV-AVWSNNIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp EEEEEEE-ECCSSSCEEEEEEEETTEEEEEEEEEEE
T ss_pred EEeCCcE-eeccCCEEEEEEEEeCCcEEEEEEEEEE
Confidence 9999988 566899 5555 5544 799999985
No 21
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=78.03 E-value=7.9 Score=36.89 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=56.8
Q ss_pred EeCCCCEEEEecCCCcccceeeEEEEcceeecCC-CCCCcc----cccccceeeeEEEEEee-----------------c
Q 048403 108 KDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG-LPPEKI----SQLHSVFYNCSLTIEHC-----------------E 165 (300)
Q Consensus 108 kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~-~p~~~~----~~~r~~~~~c~v~~~~~-----------------~ 165 (300)
+|+.++.++..++. +......|.+ .+.|+.. .+.... ..+....++|++..... .
T Consensus 305 ~~i~~Gd~l~~~~~--~~~~~~~f~a-~v~~l~~~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~ 381 (435)
T 1jny_A 305 KDIKRGDVVGHPNN--PPTVADEFTA-RIIVVWHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLK 381 (435)
T ss_dssp GGCCTTCEEECTTS--CCCEESEEEE-EEEECCCSSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBC
T ss_pred HHcCCccEecCCCC--CceEeEEEEE-EEEEECCCCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccC
Confidence 57888998887642 2223455544 3667753 222211 12223346777753210 0
Q ss_pred cCCCCEEEEEeCCCccccCCCc------EEEEEeCCEEEEeEEEeeee
Q 048403 166 DGGEDIAVVQLSEDDQGLAAGQ------FAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 166 ~~~~~~~~V~f~eP~raVAPGQ------~aVfY~gd~cLGGG~I~~~~ 207 (300)
.++...+.++|.+|. ++.+++ ..+|=+++..+|+|+|.+..
T Consensus 382 ~g~~~~v~~~~~~p~-~~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~ 428 (435)
T 1jny_A 382 QGDVAIVKFKPIKPL-CVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428 (435)
T ss_dssp TTCEEEEEEEESSCE-ECCCTTTSGGGTEEEEEETTEEEEEEEEEEEE
T ss_pred CCCEEEEEEEECceE-EEecCCcCCcCccEEEEECCeEEEEEEEeeec
Confidence 111124678888886 566788 77887888999999998775
No 22
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=76.46 E-value=12 Score=35.18 Aligned_cols=47 Identities=23% Similarity=0.153 Sum_probs=36.1
Q ss_pred cceeeeEEEEEeeccCCCCEEEEEeCCCccccCCCcEEEEEe----CCEEEEeEEEe
Q 048403 152 SVFYNCSLTIEHCEDGGEDIAVVQLSEDDQGLAAGQFAAFYQ----GRRCLGSGVIL 204 (300)
Q Consensus 152 ~~~~~c~v~~~~~~~~~~~~~~V~f~eP~raVAPGQ~aVfY~----gd~cLGGG~I~ 204 (300)
...+.|+|... ..+.+.++|++|. .+.+|+-.+|-+ +.+.+|+|+|.
T Consensus 359 t~~~~~~v~~~-----~~~~~~l~~~~p~-~~~~~~~~~~~~~~~~~~r~ig~G~i~ 409 (410)
T 1kk1_A 359 TARTMGLVTGL-----GKDEIEVKLQIPV-CAEPGDRVAISRQIGSRWRLIGYGIIK 409 (410)
T ss_dssp TEEEEEEEEEE-----ETTEEEEEEEEEE-ECCTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEeEEEEEe-----cCCEEEEEeCCcE-EecCCCEEEEEEecCCCcEEEEEEEEc
Confidence 33466777654 2348899999887 577899999987 56899999996
No 23
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=75.22 E-value=4.3 Score=38.16 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=61.3
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCC------CCCcc----cccccceeeeEE
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL------PPEKI----SQLHSVFYNCSL 159 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~------p~~~~----~~~r~~~~~c~v 159 (300)
||+.|+.+.+. -..|+..+.++..++. +. -.+.| ...+.|+... +.... ..+....+.|++
T Consensus 283 G~~v~~~l~g~-----~~~~i~~G~~l~~~~~--~~-~~~~f-~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i 353 (405)
T 2c78_A 283 GDNVGVLLRGV-----SREEVERGQVLAKPGS--IT-PHTKF-EASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVV 353 (405)
T ss_dssp TCEEEEEESSC-----CTTTCCTTCEEESTTS--SE-EEEEE-EEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEE
T ss_pred CCEEEEEECCC-----cHhhcCceEEEEcCCC--Cc-eeEEE-EEEEEEecccCCCccccccCCceEEEEEcccEEEEEE
Confidence 55555544331 1357788888877652 11 12333 3456677532 11111 112233356777
Q ss_pred EEEee----ccCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeeee
Q 048403 160 TIEHC----EDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 160 ~~~~~----~~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~~ 207 (300)
.+... ..++...+.++|.+|. .+.+|+..+|=++++.+|+|+|.+..
T Consensus 354 ~~~~~~~~l~~~~~~~v~~~~~~p~-~~~~~~rf~lr~~~~ti~~G~i~~~~ 404 (405)
T 2c78_A 354 QLPPGVEMVMPGDNVTFTVELIKPV-ALEEGLRFAIREGGRTVGAGVVTKIL 404 (405)
T ss_dssp ECCTTCCCBCTTCEEEEEEEEEEEE-EECTTCEEEEEETTEEEEEEEEEEEC
T ss_pred EEccCccccCCCCEEEEEEEECceE-EEccCCEEEEEcCCeEEEEEEEEecc
Confidence 63210 0111235678888886 67789999998888999999998763
No 24
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=74.14 E-value=11 Score=35.76 Aligned_cols=93 Identities=14% Similarity=0.061 Sum_probs=51.5
Q ss_pred EeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCCCccc----ccccceeeeEEEEEee------------c---cCC
Q 048403 108 KDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEKIS----QLHSVFYNCSLTIEHC------------E---DGG 168 (300)
Q Consensus 108 kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~~~----~~r~~~~~c~v~~~~~------------~---~~~ 168 (300)
+|+..+.+++.++.. ....+.|.+ .+.|+.+.+..... .+....+.|+|..... + .++
T Consensus 314 ~~i~~G~~l~~~~~~--~~~~~~f~a-~~~~l~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d 390 (434)
T 1zun_B 314 IDISRGDLLVHADNV--PQVSDAFDA-MLVWMAEEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLEEGPASSLQLNE 390 (434)
T ss_dssp CCCCTTCEEEETTSC--CCEEEEEEE-EEEECCSSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTC
T ss_pred cccCCccEEECCCCC--CCcccEEEE-EEEEeccccCCCCCEEEEEEcCCEEEEEEEEEeeeeccccccccCccEeCCCC
Confidence 367788888876542 223455554 56787644332221 1223446677763221 0 011
Q ss_pred CCEEEEEeCCCccccCCCc------EEEE--EeCCEEEEeEEEe
Q 048403 169 EDIAVVQLSEDDQGLAAGQ------FAAF--YQGRRCLGSGVIL 204 (300)
Q Consensus 169 ~~~~~V~f~eP~raVAPGQ------~aVf--Y~gd~cLGGG~I~ 204 (300)
...+.++|++|. ++.+++ ..++ +.++..+|+|+|.
T Consensus 391 ~~~v~~~~~~p~-~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~ 433 (434)
T 1zun_B 391 IGRVKVSLDAPI-ALDGYSSNRTTGAFIVIDRLTNGTVAAGMII 433 (434)
T ss_dssp EEEEEEEEEEEE-ECCCTTTCTTTTEEEEECTTTCCEEEEEEEE
T ss_pred EEEEEEEECCeE-EEcccccCCccceEEEEECCCCcEEEEEEEe
Confidence 124667777775 455676 4444 3457899999996
No 25
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=71.30 E-value=4.6 Score=40.53 Aligned_cols=110 Identities=14% Similarity=0.073 Sum_probs=60.2
Q ss_pred eeccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCC-CCCCcc----cccccceeeeEEEEE
Q 048403 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG-LPPEKI----SQLHSVFYNCSLTIE 162 (300)
Q Consensus 88 TIGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~-~p~~~~----~~~r~~~~~c~v~~~ 162 (300)
.-||+.||.+.+. -.+|+..+.|+..++. +..-...|. ..+.|+.. .|.... ..+....++|+|.+.
T Consensus 462 ~aG~~v~~~l~~i-----~~~~i~rG~vl~~~~~--~~~~~~~f~-a~v~~~~~~~pi~~g~~~~l~~~t~~~~~~i~l~ 533 (592)
T 3mca_A 462 VAGDTVTLQLADI-----EVNQLRPGDILSNYEN--PVRRVRSFV-AEIQTFDIHGPILSGSTLVLHLGRTVTSVSLKIV 533 (592)
T ss_dssp ETTCEEEEEESSS-----CGGGCCTTCEEECSSS--CCEEESEEE-EEEEECSCSSCEETTEEEEEECSSCEEEEEEEEE
T ss_pred cCCCEEEEEEccc-----cccccceEEEeccCCC--CccccCeEE-EEEEEECCCccCCCCCEEEEEEcCcEEEEEEEEE
Confidence 3455555555431 1356778888876643 222245564 44567653 222111 122234467888543
Q ss_pred ee--------ccCCCCEEEEE-eCCCcccc------CCCcEEEEEeCCEEEEeEEEeee
Q 048403 163 HC--------EDGGEDIAVVQ-LSEDDQGL------AAGQFAAFYQGRRCLGSGVILEA 206 (300)
Q Consensus 163 ~~--------~~~~~~~~~V~-f~eP~raV------APGQ~aVfY~gd~cLGGG~I~~~ 206 (300)
.. ..++...+.+. +.+|. .+ .+|+..+|-+++..+|+|+|.++
T Consensus 534 ~~~~~~~~~l~~gd~~~v~l~fl~~p~-~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v 591 (592)
T 3mca_A 534 TVNNKRSRHIASRKRALVRISFLDGLF-PLCLAEECPALGRFILRRSGDTVAAGIVKEL 591 (592)
T ss_dssp ESSSSCCSEECSSCEEEEEEEESSSCE-EECCTTTCHHHHEEEEESSSSEEEEEEEEEE
T ss_pred eccccchhccCCCCEEEEEEEECCCcE-EEEeccCCCCCCeEEEEECCcEEEEEEEEEc
Confidence 20 11112235566 45665 33 57888888778889999999864
No 26
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=68.11 E-value=0.54 Score=47.82 Aligned_cols=42 Identities=2% Similarity=-0.194 Sum_probs=25.7
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
..|.++|+..++|||+.... ..+..........+||||+++|
T Consensus 447 ~~A~~~g~lvlgTgnksE~~-----------------~Gy~T~ygD~~~~~~Pl~~l~K 488 (634)
T 3ilv_A 447 MLTNVKQALLITTSNRSEGD-----------------VGYATMDGDTAGGIAPIAGVDK 488 (634)
T ss_dssp HHHHHHTCEEBCCCCHHHHH-----------------TTCSCTTTTTCSSBBTTTTSCH
T ss_pred HHHHhcCCEEeccCchhhHh-----------------hCCccccCCcccCCcccCCCcH
Confidence 35677899999999954331 1111111122245799999999
No 27
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=66.22 E-value=29 Score=32.55 Aligned_cols=88 Identities=19% Similarity=0.100 Sum_probs=53.6
Q ss_pred EeCCCCEEEEecCCCcccceeeEEEEcceeecCCC----------CCCccc----ccccceeeeEEEEEeeccCCCCEEE
Q 048403 108 KDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL----------PPEKIS----QLHSVFYNCSLTIEHCEDGGEDIAV 173 (300)
Q Consensus 108 kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~----------p~~~~~----~~r~~~~~c~v~~~~~~~~~~~~~~ 173 (300)
.|...+.|...++.. +. ..+.|. -.+.|+... +..... .+....+.|++... ..+.+.
T Consensus 302 ~~~~~G~vl~~~~~~-~~-~~~~~~-a~~~~l~~~~g~~~~~~~~~l~~g~~~~~~~~t~~~~~~v~~~-----~~~~~~ 373 (408)
T 1s0u_A 302 SDALTGSVVGLPGTL-PP-IREKIT-IRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGVITSA-----RGDIAD 373 (408)
T ss_dssp GGTTTTCEEESTTCS-CC-EEEEEE-EEEEECCCCSSCSSTTCCCCCCTTCEEEEEETTEEEEEEEEEE-----ETTEEE
T ss_pred hhccceeEEECCCCC-Cc-eeEEEE-EEEEEEeccccccccccccCCCCCCEEEEEEcCCEEEEEEEEe-----cCCEEE
Confidence 466677777665432 11 123333 356676432 111111 11233466777654 234889
Q ss_pred EEeCCCccccCCCcEEEEEe----CCEEEEeEEEe
Q 048403 174 VQLSEDDQGLAAGQFAAFYQ----GRRCLGSGVIL 204 (300)
Q Consensus 174 V~f~eP~raVAPGQ~aVfY~----gd~cLGGG~I~ 204 (300)
++|++|. .+.+|+-.+|-+ +.+.+|.|+|.
T Consensus 374 ~~~~~p~-~~~~~~~~~~~~~~~~~~r~ig~G~i~ 407 (408)
T 1s0u_A 374 IKLKLPI-CAEIGDRVAISRRVGSRWRLIGYGTIE 407 (408)
T ss_dssp EEEEEEE-ECCTTCEEEEEEECSSSEEEEEEEEEC
T ss_pred EEECCcE-EecCCCEEEEEEecCCCeEEEEEEEEc
Confidence 9999887 567899999987 56899999996
No 28
>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0
Probab=62.63 E-value=1.2 Score=41.14 Aligned_cols=42 Identities=10% Similarity=-0.086 Sum_probs=29.0
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|.++|+-.++|||++...-.... ..-|. ...++|||+++|
T Consensus 157 ~~A~~~g~lVlgTgn~sE~~~Gy~T-kyGD~----------------~~di~Pl~dl~K 198 (279)
T 3q4g_A 157 EIAGYVGGLVLGTDHSAENITGFYT-KFGDG----------------ACDLAPLFGLNK 198 (279)
T ss_dssp HHHHHHTEEEBCCCCHHHHHHTCSC-TTTTT----------------CCSBCTTTTCCH
T ss_pred HHHHHCCCEEecCccHHhhhccchh-hcCCc----------------ccceeecCCCcH
Confidence 4677889999999999876422211 11233 334999999999
No 29
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=60.63 E-value=17 Score=31.35 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=58.4
Q ss_pred eccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCCC-cc----cccccceeeeEEEEEe
Q 048403 89 IGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE-KI----SQLHSVFYNCSLTIEH 163 (300)
Q Consensus 89 IGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~-~~----~~~r~~~~~c~v~~~~ 163 (300)
-||+-+|.+.+ |-.+|+..+.+...++.. ..-.+.|.+ .+.|+...++. .. ..+....++|++....
T Consensus 63 aGd~V~l~L~g-----i~~~di~rG~vl~~~~~~--~~~~~~f~a-~v~~l~~~~~i~~g~~~~l~~~t~~~~~~i~~i~ 134 (204)
T 3e1y_E 63 PGENLKIRLKG-----IEEEEILPGFILCDPNNL--CHSGRTFDA-QIVIIEHKSIICPGYNAVLHIHTCIEEVEITALI 134 (204)
T ss_dssp TTSEEEEEEEE-----SSSSCCCTTCEEBCSSSC--CCCCSEEEE-EEECCSCCSCCCTTEEEEEESSSCEEEEEEEEEC
T ss_pred CCCEEEEEEcC-----CCHHHCccceEEECCCCC--CchhEEEEE-EEEEeCCCCccCCCceEEEEEeCCEEEEEEEEEE
Confidence 36666665543 113578888888776532 112345544 46687654321 11 1222344667775321
Q ss_pred e--c------------cC-CCC--EEEEEeCCCccccCC-------CcEEEEEeCCEEEEeEEEeeee
Q 048403 164 C--E------------DG-GED--IAVVQLSEDDQGLAA-------GQFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 164 ~--~------------~~-~~~--~~~V~f~eP~raVAP-------GQ~aVfY~gd~cLGGG~I~~~~ 207 (300)
. + .. .++ .+.+++.+|.- +-+ |.+++. |++.-+|+|+|.+..
T Consensus 135 ~~id~~tg~~~~~~~~~l~~gd~a~v~l~~~~pi~-~e~~~~~~~~Grfilr-d~~~Tva~G~V~~v~ 200 (204)
T 3e1y_E 135 CLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTIC-LETFKDFPQMGRFTLR-DEGKTIAIGKVLKLV 200 (204)
T ss_dssp CCCCSSTTCCCSSCCSCCCTTCEEEEEEEESSCCC-CCCTTSSGGGTEEEEE-CSSSCCEEEEEEEEC
T ss_pred EEEcCCCCCEeccCCcCcCCCCEEEEEEEECCeEE-EEEcccCcCCCCEEEE-ECCcEEEEEEEEEEe
Confidence 0 0 00 122 35667777752 333 666555 666889999998865
No 30
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=58.76 E-value=18 Score=40.14 Aligned_cols=108 Identities=21% Similarity=0.222 Sum_probs=64.9
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCC------CCCcc----cccccceeeeEE
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL------PPEKI----SQLHSVFYNCSL 159 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~------p~~~~----~~~r~~~~~c~v 159 (300)
||+.|+.+.+. -..|+..+.++..++. + .-...|.+ .+.|+... +.... ..+....+.|++
T Consensus 556 Gd~Vgl~L~GI-----~~~dI~RGdVL~~~~~--~-~~~~~F~A-~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I 626 (1289)
T 3avx_A 556 GENVGVLLRGI-----KREEIERGQVLAKPGT--I-KPHTKFES-EVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI 626 (1289)
T ss_dssp TCEEEEEESSC-----CGGGCCTTCEEESTTS--C-CEEEEEEE-EEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEE
T ss_pred CCcceeEeeec-----chhcCCcccEEecCCC--C-ccceeEEE-EEEEEccccccccccccCCCceEEEEeeeeEEEEE
Confidence 66666555431 2357888888887653 2 22344444 56777532 11110 112233456777
Q ss_pred EEEe----eccCCCCEEEEEeCCCccccCCCcEEEEEeCCEEEEeEEEeeee
Q 048403 160 TIEH----CEDGGEDIAVVQLSEDDQGLAAGQFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 160 ~~~~----~~~~~~~~~~V~f~eP~raVAPGQ~aVfY~gd~cLGGG~I~~~~ 207 (300)
.+.. ...++...+.++|.+|. .+.+|+..+|=++++.+|+|+|.+..
T Consensus 627 ~L~~~~~~L~~Gd~a~V~L~l~~Pi-~ve~g~RFiLRd~grTIG~G~V~~v~ 677 (1289)
T 3avx_A 627 ELPEGVEMVMPGDNIKMVVTLIHPI-AMDDGLRFAIREGGRTVGAGVVAKVL 677 (1289)
T ss_dssp ECCTTCCCBCTTCCCEEEEEEEEEE-ECCTTCEEEEEETTEEEEEEEEEEEC
T ss_pred EECCCcccccCCCEEEEEEEECceE-EEccCCEEEEEeCCeEEEEEEEeeec
Confidence 6421 11123356888999887 56789999998888999999999875
No 31
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=57.07 E-value=1.3 Score=41.13 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=28.4
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|.++|+-.++|||++...-......+ |. ...++||++++|
T Consensus 157 ~~A~~~g~lVlgTgn~sE~~~Gy~T~~G-D~----------------~~~~~Pl~~l~K 198 (285)
T 3dpi_A 157 AVAGARNGVVIGTDHAAESVMGFFTKFG-DG----------------GADVLPLAGLTK 198 (285)
T ss_dssp HHHHHTTEEEBCCCCHHHHHHHHHHCCC-CC----------------CCSBCTTTTCCH
T ss_pred HHHHHCCCEEEeCccHHhhhCCcccccC-CC----------------ceeEeeecCCcH
Confidence 4678899999999999875311111112 32 235899999999
No 32
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=56.11 E-value=1.2 Score=40.02 Aligned_cols=42 Identities=7% Similarity=-0.154 Sum_probs=26.8
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|.+.|+..|+|||.+-.... . +. ........++||++++|
T Consensus 120 ~~A~~~g~~vl~tg~~~E~~~G---y-----------~t---~~gd~~~~i~PL~~l~K 161 (268)
T 1xng_A 120 DYSLKSDSLVIGTSNKSERMLG---Y-----------GT---LFGDLACAINPIGELFK 161 (268)
T ss_dssp HHHHHHTCEEBCCCCHHHHHHT---C-----------SC---TTTTTCCSEETTTTSCH
T ss_pred HHHHHCCCEEEECCcHHHHhcC---c-----------cc---ccCCCCeeEEecCCCCH
Confidence 4577889999999996432111 1 00 00112468999999999
No 33
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=53.51 E-value=4.2 Score=35.12 Aligned_cols=50 Identities=18% Similarity=0.090 Sum_probs=29.1
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCc-ceEecccCHH------HHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQ-TYFLSHLSQA------QLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQ-SYFLs~L~q~------qL~rllFPLG~l~K 60 (300)
+.|+++|+++|||||++.- ... -.|. ..|+..+..- .--++++||.+++|
T Consensus 110 ~~A~~~g~~~I~~G~~~~D---~~~------~~~~r~~~~~~~~~~~~~~~~~~~~i~~PL~~~~K 166 (232)
T 2pg3_A 110 IYAYQVGAEAVITGVCETD---FSG------YPDCRDEFVKALNQAIVLGIARDIRFETPLMWLNK 166 (232)
T ss_dssp HHHHHHTCSEEECCCCSCS---SSC------CGGGSHHHHHHHHHHHHHHHTSCCEEECTTTTCCH
T ss_pred HHHHHcCcCEEEEccCccc---cCC------CCCCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCH
Confidence 3577889999999998631 100 0111 1123333221 01368899999999
No 34
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=51.88 E-value=15 Score=35.50 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=55.0
Q ss_pred EEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCCC-cc----cccccceeeeEEEEEe----------------ec
Q 048403 107 EKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPE-KI----SQLHSVFYNCSLTIEH----------------CE 165 (300)
Q Consensus 107 ~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~-~~----~~~r~~~~~c~v~~~~----------------~~ 165 (300)
.+|+..+.|++.++. +..-.+.|.+ .+.|+...++. .. ..+.....+|+++... ..
T Consensus 343 ~~~i~rG~vl~~~~~--~~~~~~~f~a-~v~~l~~~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~ 419 (467)
T 1r5b_A 343 DSDVQTGYVLTSTKN--PVHATTRFIA-QIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFAT 419 (467)
T ss_dssp CTTCCTTCEEECSSS--CCCEEEEEEE-EEEECSSCCCBSSCCCBEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCC
T ss_pred HhhCCceEEEeCCCC--CCccceEEEE-EEEEeCCCCccCCCCEEEEEEeCCEEEEEEEEEEEEecCCccccccCccccC
Confidence 357888888887653 2223455544 36687543221 11 1222223456654110 00
Q ss_pred cCCCCEEEEEeCCCccccCCCc------EEEEEeCCEEEEeEEEeeee
Q 048403 166 DGGEDIAVVQLSEDDQGLAAGQ------FAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 166 ~~~~~~~~V~f~eP~raVAPGQ------~aVfY~gd~cLGGG~I~~~~ 207 (300)
.++...+.++|.+|. ++.+|+ ..+|=++++.+|+|+|.++.
T Consensus 420 ~g~~~~v~l~~~~p~-~~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~ 466 (467)
T 1r5b_A 420 KGMKIIAELETQTPV-CMERFEDYQYMGRFTLRDQGTTVAVGKVVKIL 466 (467)
T ss_dssp TTCBCCEEEEEEEEE-ECCCTTTCHHHHEEEEECSSSCEEEEEEEEEE
T ss_pred CCCEEEEEEEECcEE-EEEEcCcCCCCccEEEEECCeEEEEEEEEEec
Confidence 112235778888886 566774 66776777899999998763
No 35
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=48.78 E-value=22 Score=33.37 Aligned_cols=90 Identities=10% Similarity=-0.067 Sum_probs=51.8
Q ss_pred EeCCCCEEEEecCCCcccceeeEEEEcceeecCC-CCCCccc----ccccceeeeEEEEEeec--------cCCCCEEEE
Q 048403 108 KDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSG-LPPEKIS----QLHSVFYNCSLTIEHCE--------DGGEDIAVV 174 (300)
Q Consensus 108 kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~-~p~~~~~----~~r~~~~~c~v~~~~~~--------~~~~~~~~V 174 (300)
+|+.++.++.. + + ...+.|. -.+.|+.. .+..... .+....++|++.....+ .++...+.+
T Consensus 265 ~~i~~Gdvl~~-~---~-~~~~~f~-a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l 338 (370)
T 2elf_A 265 KDIERGFIISD-K---E-IVTTDYT-LECTVSKFTKKIEPASVLHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLEL 338 (370)
T ss_dssp GGCCTTCEEES-C---C-EEEEEEE-EEEEECTTSCCBCTTCEEEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEE
T ss_pred HHcCCceEEEC-C---C-ceeEEEE-EEEEEECCCCCCCCCCEEEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEE
Confidence 57788888876 2 2 2234443 45667754 2222111 11234467877643110 111225678
Q ss_pred EeCCCccccCCCcEEEEEeCC---EEEEeEEEe
Q 048403 175 QLSEDDQGLAAGQFAAFYQGR---RCLGSGVIL 204 (300)
Q Consensus 175 ~f~eP~raVAPGQ~aVfY~gd---~cLGGG~I~ 204 (300)
+|++|. .+.+|+..+|-++. +.+|+|.|.
T Consensus 339 ~~~~pi-~~~~~~rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 339 SGNKKL-AYSKQDRFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp EEEEEE-EECTTSCEEEECTTSSSCEEEEEEEC
T ss_pred EECcEE-EEeCCCEEEEEECCCCCEEEEEEEeC
Confidence 888876 46789988888754 699999873
No 36
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=47.98 E-value=6.4 Score=35.99 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=29.9
Q ss_pred hhhHhCCCcEEecCcceEEeecCC---CCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSA---DHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~---~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|++.|+++|||||++.=.-... ..++... -.|+.+++.. ..+++||.+++|
T Consensus 119 ~~a~~~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~-----~gl~~~~~~~-~~iirPLl~~~k 174 (317)
T 1wy5_A 119 EILESEGFDCIATAHHLNDLLETSLLFFTRGTGL-----DGLIGFLPKE-EVIRRPLYYVKR 174 (317)
T ss_dssp HHHHHTTCSEEECCCCHHHHHHHHHHHHHHCCCH-----HHHHCSCSEE-TTEECTTTTCCH
T ss_pred HHHHHcCCCEEEEeCchhHHHHHHHHHHHhCCCc-----ccccCCCCCC-CeEECCCccCCH
Confidence 457789999999999964100000 0011110 0233333221 278999999998
No 37
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=44.36 E-value=7.5 Score=37.70 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=30.7
Q ss_pred hhhHhCCCcEEecCcceEEeecCC---CCCCCCCCCCcceEecccCHHHH---hhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSA---DHKDKPSVKDQTYFLSHLSQAQL---RRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~---~~~~~D~~KDQSYFLs~L~q~qL---~rllFPLG~l~K 60 (300)
+.|++.|+++|||||++.=.-... ..++.... .|+.++.... .+++.||.+++|
T Consensus 113 ~~a~~~g~~~IatgH~~dD~aEt~L~~l~rG~g~~-----gL~gm~~~~~~~~~~iiRPLl~~~k 172 (464)
T 3a2k_A 113 ELMEKHQAGYVAVGHHGDDQVETILMRLVRGSTSK-----GYAGIPVKRPFHGGYLIRPFLAVSR 172 (464)
T ss_dssp HHHHTTTCCEEECCCCHHHHHHHHHHHHHHCCCSS-----STTCSCSEEECSSSEEECGGGGSCH
T ss_pred HHHHHcCcCEEEEeCChHHHHHHHHHHHHcCCCcc-----cccCCCccccCCCCEEECCCccCcH
Confidence 467789999999999964100000 01222111 2344433221 368999999998
No 38
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=42.71 E-value=14 Score=35.80 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=61.3
Q ss_pred ccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCC--CCCccc----ccccceeeeEEEEEe
Q 048403 90 GQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGL--PPEKIS----QLHSVFYNCSLTIEH 163 (300)
Q Consensus 90 GQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~--p~~~~~----~~r~~~~~c~v~~~~ 163 (300)
||+.|+.+.+ |-.+|+..+.++++... .+ .-.+.|. -.+.|+... +..... .+....+.|++....
T Consensus 259 G~~v~~~l~~-----~~~~~i~~Gdvl~~~~~-~~-~~~~~~~-a~v~~l~~~~~~l~~g~~~~l~~~t~~~~~~v~~~~ 330 (482)
T 1wb1_A 259 GDRVGMAIQG-----VDAKQIYRGXILTSKDT-KL-QTVDKIV-AKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFK 330 (482)
T ss_dssp SCCCCEECSS-----CCSSCCCSSCBCCCTTC-CC-CCEEEEE-ECCCCCSSCCSCCCSSCEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEecC-----CCHhhccccceEecCCC-CC-ceeeEEE-EEEEEeccCCcccCCCCEEEEEEcccEEEEEEEEEe
Confidence 5665555543 11246677877744322 11 1234444 467787542 221111 122344677776543
Q ss_pred ------------ec---cCCCCEEEEEeCCCccccCCCcEEEEEe---C---CEEEEeEEEeeeec
Q 048403 164 ------------CE---DGGEDIAVVQLSEDDQGLAAGQFAAFYQ---G---RRCLGSGVILEAWD 208 (300)
Q Consensus 164 ------------~~---~~~~~~~~V~f~eP~raVAPGQ~aVfY~---g---d~cLGGG~I~~~~~ 208 (300)
.+ .++...+.++|++|. .+.+|+..+|=+ + .+.+|+|+|.....
T Consensus 331 ~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv-~~~~~~rfilr~~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 331 KVTFGKTEENIILNEVISGNEXYXAFELEEKV-LAEVGDRVLITRLDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp ECCSSSCCCEEECCSSCCSSCCCEEEEEEEEE-CCCSSCCCBEECTTSCTTSCCCCCBCCEEECCC
T ss_pred ccccccccccccchhhcCCCEEEEEEEcCccE-EecCCCeEEEEECCCCccCceEeeEEEEEeccc
Confidence 01 112345788888887 455788777766 3 68999999987753
No 39
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=41.03 E-value=2.5 Score=42.35 Aligned_cols=42 Identities=5% Similarity=-0.173 Sum_probs=27.2
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|.+.|++.|+|||++........ ...| ....++||++++|
T Consensus 421 ~~A~~~g~~vl~TGn~se~~~Gy~t-~~gd----------------~~~~~~Pl~~l~K 462 (590)
T 3n05_A 421 AISNQEGHIVLAPGNKSELAVGYST-LYGD----------------SVGAYGPIKDVYK 462 (590)
T ss_dssp HHHHHHTCEEBCCCCHHHHHHTCCC-SSCT----------------TSCSBCTTTTSCH
T ss_pred HHHHhcCCEEEeCCCHHHHhcCchh-hcCC----------------CccceeecCCCcH
Confidence 3567789999999998765321100 0011 2446899999999
No 40
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=40.04 E-value=2.8 Score=37.14 Aligned_cols=42 Identities=5% Similarity=-0.089 Sum_probs=26.5
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccCHHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLSQAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~q~qL~rllFPLG~l~K 60 (300)
+.|.+.|+..|+|||.+..... .... . ......++||++++|
T Consensus 117 ~~A~~~g~~vl~tg~~~e~~~G---y~t~--~------------g~~~~~i~Pl~~l~K 158 (257)
T 2e18_A 117 AHANSLGRIVLGTSNRSEFLTG---YFTK--W------------GDGASDYAPIINLYK 158 (257)
T ss_dssp HHHHHHTCEEECCCCHHHHHHT---CSCT--T------------STTCSSBCTTTTSCH
T ss_pred HHHHHcCCEEEEcCchhHHhcC---Ceec--c------------CCCccCEeecCCCcH
Confidence 4577889999999996432111 1000 0 012468999999999
No 41
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=38.74 E-value=9.1 Score=37.04 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.9
Q ss_pred hhhHhCCCcEEecCcce
Q 048403 2 DAISSMEFDYVASGHYA 18 (300)
Q Consensus 2 e~a~~lGad~VATGHYA 18 (300)
+.|++.|+++|||||++
T Consensus 105 ~~A~~~Ga~~IatGh~~ 121 (413)
T 2nz2_A 105 EIAQREGAKYVSHGATG 121 (413)
T ss_dssp HHHHHHTCSEEECCCCT
T ss_pred HHHHHcCCCEEEECCcC
Confidence 46778899999999996
No 42
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=34.95 E-value=12 Score=32.01 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=10.8
Q ss_pred CCcEEecCcceE
Q 048403 8 EFDYVASGHYAN 19 (300)
Q Consensus 8 Gad~VATGHYAr 19 (300)
|+++|||||++.
T Consensus 101 g~~~i~tGh~~d 112 (203)
T 3k32_A 101 EYSILADGTRRD 112 (203)
T ss_dssp TCSEEECCCCTT
T ss_pred CCCEEEECCCcc
Confidence 999999999963
No 43
>2nmm_A 14 kDa phosphohistidine phosphatase; NESG Q9H0Y3 human phosphohistidine phosphatase, structural G PSI-2, protein structure initiative; 2.70A {Homo sapiens} SCOP: d.322.1.1
Probab=32.98 E-value=33 Score=28.63 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=11.0
Q ss_pred EEEEeEEEeeeecC
Q 048403 196 RCLGSGVILEAWDD 209 (300)
Q Consensus 196 ~cLGGG~I~~~~~~ 209 (300)
.|||||.|..-..+
T Consensus 82 ~clGGGRI~hd~~~ 95 (135)
T 2nmm_A 82 ECLGGGRISHQSQD 95 (135)
T ss_dssp EEEEEEEEEEETTT
T ss_pred EEeCCeEEEecCCC
Confidence 79999999965433
No 44
>2hw4_A 14 kDa phosphohistidine phosphatase; PHPT1, human, structural genomics, structural genomics consortium, SGC, hydrolase; 1.90A {Homo sapiens} SCOP: d.322.1.1 PDB: 2ai6_A 2ozw_A 2ozx_A
Probab=32.82 E-value=36 Score=28.71 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=11.0
Q ss_pred EEEEeEEEeeeecC
Q 048403 196 RCLGSGVILEAWDD 209 (300)
Q Consensus 196 ~cLGGG~I~~~~~~ 209 (300)
.|||||.|..-..+
T Consensus 91 ecLGGGRI~hd~~~ 104 (144)
T 2hw4_A 91 ECLGGGRISHQSQD 104 (144)
T ss_dssp EEEEEEEEEEETTT
T ss_pred EEeCCcEEEecCCC
Confidence 79999999965433
No 45
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=30.98 E-value=18 Score=34.49 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=28.7
Q ss_pred hhhHhCCCcEEecCcceEEeecCCCCCCCCCCCCcceEecccC---HHHHhhhcccCCCCcc
Q 048403 2 DAISSMEFDYVASGHYANVVHSSADHKDKPSVKDQTYFLSHLS---QAQLRRLIFHLVLYPR 60 (300)
Q Consensus 2 e~a~~lGad~VATGHYAri~~~~~~~~~~D~~KDQSYFLs~L~---q~qL~rllFPLG~l~K 60 (300)
+.|++.|+++|||||++. + . . +.+|..+. ...--.++.||..++|
T Consensus 284 ~~A~~~g~~~I~tG~~~d----D-~-a--------e~~l~~l~~~~~~~~~~virPL~~l~K 331 (413)
T 2c5s_A 284 RIAEERNALAITTGESLG----Q-V-A--------SQTLDSMHTINEVTNYPVIRPLITMDK 331 (413)
T ss_dssp HHHHHTTCCEEECCCCSS----S-T-T--------SCCHHHHHHHGGGCCSCEECTTTTCCH
T ss_pred HHHHHcCCCEEEEcccch----h-h-H--------HHHHHHHhcccccCCCEEEeccCCCCH
Confidence 357889999999999752 1 0 0 12343332 1122358899999988
No 46
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=29.26 E-value=2e+02 Score=27.13 Aligned_cols=110 Identities=10% Similarity=0.115 Sum_probs=55.9
Q ss_pred eeccccccCCCCCceEEEEEEeCCCCEEEEecCCCcccceeeEEEEcceeecCCCCCCc-c----cccccceeeeEEEEE
Q 048403 88 TIGQHQELGLLYIVYRYVVEKDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLSGLPPEK-I----SQLHSVFYNCSLTIE 162 (300)
Q Consensus 88 TIGQRkGLgi~g~~p~YVv~kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~~~p~~~-~----~~~r~~~~~c~v~~~ 162 (300)
.-||+.||.+.+ |-.+|+.++.|.+.++.. + ...+.| ...+.|+...++.. . ..+......|++.-.
T Consensus 300 ~aG~~v~~~l~g-----i~~~~i~rG~vl~~~~~~-~-~~~~~f-~a~v~~l~~~~~i~~g~~~~~~~~t~~~~~~i~~i 371 (439)
T 3j2k_7 300 APGENLKIRLKG-----IEEEEILPGFILCDPSNL-C-HSGRTF-DVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITAL 371 (439)
T ss_pred cCCCcceEEEec-----cchhhcCCcEEecCCCCC-C-ceeeEE-EEEEEEeCCCCcCCCCCEEEEEEeceEEEEEEEEE
Confidence 347777777765 335688889888876532 1 112344 44567876443211 1 122223345665421
Q ss_pred eec------------c--C-CCCEE--EEEeCCCc------cccCCCcEEEEEeCCEEEEeEEEeee
Q 048403 163 HCE------------D--G-GEDIA--VVQLSEDD------QGLAAGQFAAFYQGRRCLGSGVILEA 206 (300)
Q Consensus 163 ~~~------------~--~-~~~~~--~V~f~eP~------raVAPGQ~aVfY~gd~cLGGG~I~~~ 206 (300)
... + . .++.+ .+.+.+|. .-..-|.++++ |.+.-+|.|+|.++
T Consensus 372 ~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~~~e~~~~~~~~g~f~l~-d~~~tv~~G~i~~v 437 (439)
T 3j2k_7 372 ISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLR-DEGKTIAIGKVLKL 437 (439)
T ss_pred EEeecCCchhhhccCcceecCCcEEEEEEEeCCeEEEeeccccccCCCEEEE-ECCceEEEEEEEEe
Confidence 100 0 0 12222 33333332 11233777776 55678899999865
No 47
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=23.86 E-value=1.4e+02 Score=29.83 Aligned_cols=96 Identities=16% Similarity=0.098 Sum_probs=49.6
Q ss_pred EeCCCCEEEEecCCCcccceeeEEEEcceeecC-CCCCCccc----ccccceeeeEEEEEee--c--------------c
Q 048403 108 KDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS-GLPPEKIS----QLHSVFYNCSLTIEHC--E--------------D 166 (300)
Q Consensus 108 kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~-~~p~~~~~----~~r~~~~~c~v~~~~~--~--------------~ 166 (300)
+|+..+.|++.++.+ +..-.+.|.+ .+.|+. +.|..... .+....++|+|..... + .
T Consensus 484 ~di~rGdvl~~~~~~-~~~~~~~f~a-~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~~~~~~~l~~ 561 (611)
T 3izq_1 484 EDIQNGDLAASVDYS-SIHSAQCFVL-ELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGS 561 (611)
T ss_dssp TSCCTTCEEBCSTTC-SCCCBSCEEE-EEEECSCSSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBCTTCSCSSSS
T ss_pred hhCcceEEccCCCCC-CCceeeEEEE-EEEEECCCCCCCCCCEEEEEECCeEeeEEeeeeeeeecccccccccCccccCC
Confidence 577888888776541 2222344544 455664 22222211 1223446787764311 0 0
Q ss_pred CCCCEEEEEe---CCCccccC-------CCcEEEEEeCCEEEEeEEEeeee
Q 048403 167 GGEDIAVVQL---SEDDQGLA-------AGQFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 167 ~~~~~~~V~f---~eP~raVA-------PGQ~aVfY~gd~cLGGG~I~~~~ 207 (300)
++...+.+.| .+|.- +- .|.+++ -+.+.-+|+|+|.++.
T Consensus 562 ~d~a~v~~~~~~~~~pi~-~e~~~~~~~~grf~l-r~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 562 KQRAFVEIELIEVKRWIP-LLTAHENDRLGRVVL-RKDGRTIAAGKISEIT 610 (611)
T ss_dssp CCSEEEEEEESSCSSCBC-CCCTTTCHHHHEEEE-ESSSSEEEEEEEEEEC
T ss_pred CCEEEEEEEECCCCCceE-EeecccCCCCCcEEE-EeCCCEEEEEEEEEec
Confidence 0112356677 33432 22 267666 4677889999998753
No 48
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=20.92 E-value=2.9e+02 Score=26.33 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=49.5
Q ss_pred EeCCCCEEEEecCCCcccceeeEEEEcceeecC-CCCCCccc----ccccceeeeEEEEEe----e-----cc-----CC
Q 048403 108 KDIENNIVFVSRNYYSFDKKRHLFHAGSLKLLS-GLPPEKIS----QLHSVFYNCSLTIEH----C-----ED-----GG 168 (300)
Q Consensus 108 kD~~~N~V~V~~~~~~~~L~~~~~~v~~~~Wi~-~~p~~~~~----~~r~~~~~c~v~~~~----~-----~~-----~~ 168 (300)
+|+..+.|+..++.+ +..-.+.|.+ .+.|+. +.+..... .+....++|+|.... . +. ..
T Consensus 350 ~di~rG~vl~~~~~~-~~~~~~~f~a-~v~~l~~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~~~~~~~l~~ 427 (483)
T 3p26_A 350 EDIQNGDLAASVDYS-SIHSAQCFVL-ELTTFDMNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTASKKKIRHLGS 427 (483)
T ss_dssp GGCCTTCEEECTTCC-CCEECSEEEE-EEEECSCSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEECCSCCSCBCS
T ss_pred ccCCceEEEEcCCCC-CCceeeEEEE-EEEEECCCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCcccccCccCcCC
Confidence 577888888876531 2222455544 456664 22222211 122334567765321 0 00 01
Q ss_pred CCE--EEEEe---CCCc------cccCCCcEEEEEeCCEEEEeEEEeeee
Q 048403 169 EDI--AVVQL---SEDD------QGLAAGQFAAFYQGRRCLGSGVILEAW 207 (300)
Q Consensus 169 ~~~--~~V~f---~eP~------raVAPGQ~aVfY~gd~cLGGG~I~~~~ 207 (300)
++. +.+.+ .+|. .-..-|.+++ -+.+.-+|.|+|....
T Consensus 428 ~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l-~~~~~tv~~G~i~~~~ 476 (483)
T 3p26_A 428 KQRAFVEIELIEVKRWIPLLTAHENDRLGRVVL-RKDGRTIAAGKISEIT 476 (483)
T ss_dssp SCEEEEEEEECSCSSCCEECCTTTCTTTTEEEE-EETTEEEEEEEEEEEC
T ss_pred CCEEEEEEEECCCCCcEEEEecccCccCCCEEE-EeCCCEEEEEEEEEec
Confidence 233 44555 2232 1124588766 5678889999998654
Done!