Query 048404
Match_columns 148
No_of_seqs 121 out of 1110
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 09:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 5E-56 1.1E-60 309.7 15.4 148 1-148 1-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 3E-54 6.5E-59 306.7 17.0 146 2-147 6-152 (153)
3 PLN00172 ubiquitin conjugating 100.0 1.4E-51 3.1E-56 294.1 18.5 147 1-147 1-147 (147)
4 KOG0419 Ubiquitin-protein liga 100.0 6.9E-52 1.5E-56 282.0 14.9 144 2-145 5-148 (152)
5 PTZ00390 ubiquitin-conjugating 100.0 3.7E-51 8.1E-56 293.2 18.5 147 2-148 3-149 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 1.5E-46 3.2E-51 262.8 15.8 144 2-145 6-163 (171)
7 KOG0426 Ubiquitin-protein liga 100.0 5.5E-45 1.2E-49 248.4 14.3 146 1-146 4-163 (165)
8 KOG0424 Ubiquitin-protein liga 100.0 9.8E-45 2.1E-49 250.3 14.8 147 2-148 5-158 (158)
9 cd00195 UBCc Ubiquitin-conjuga 100.0 1.9E-44 4E-49 255.8 15.8 139 4-142 2-141 (141)
10 KOG0418 Ubiquitin-protein liga 100.0 9.9E-45 2.1E-49 260.5 14.3 147 2-148 4-154 (200)
11 PF00179 UQ_con: Ubiquitin-con 100.0 1.6E-44 3.5E-49 255.8 14.7 138 5-142 1-140 (140)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.5E-43 3.3E-48 252.2 17.4 143 4-146 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 4.4E-44 9.5E-49 247.2 12.3 142 3-145 31-172 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 4.9E-40 1.1E-44 225.9 14.0 146 1-147 2-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 9.9E-38 2.1E-42 221.1 11.9 143 2-147 4-148 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 2.8E-36 6.2E-41 214.0 12.0 143 2-147 29-175 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 1.1E-36 2.3E-41 216.5 7.8 146 3-148 12-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 2.8E-32 6E-37 186.0 11.8 111 2-113 16-127 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 7.3E-29 1.6E-33 182.0 14.8 112 2-115 6-120 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 9.3E-26 2E-30 166.2 13.8 139 5-144 23-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 1.1E-22 2.4E-27 152.2 9.8 107 2-111 12-121 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 6.6E-17 1.4E-21 140.8 10.0 109 4-112 854-971 (1101)
23 KOG0895 Ubiquitin-conjugating 99.6 6.9E-15 1.5E-19 128.3 10.6 111 3-113 284-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 1.9E-13 4E-18 94.1 8.3 108 5-112 9-123 (138)
25 KOG0897 Predicted ubiquitin-co 98.9 6.8E-09 1.5E-13 69.8 6.2 91 50-141 13-109 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.8 1.9E-08 4.2E-13 70.6 7.5 67 46-112 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.5 6.3E-07 1.4E-11 62.0 6.9 80 31-111 29-116 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.4 3.4E-07 7.4E-12 64.0 3.8 95 3-103 26-135 (161)
29 KOG3357 Uncharacterized conser 97.8 5.8E-05 1.3E-09 52.2 5.1 94 3-102 29-137 (167)
30 KOG2391 Vacuolar sorting prote 97.4 0.0011 2.3E-08 52.9 8.7 76 37-113 55-138 (365)
31 PF05773 RWD: RWD domain; Int 97.0 0.0041 8.8E-08 41.4 6.5 70 3-73 3-74 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.8 0.016 3.5E-07 40.0 8.8 90 19-111 12-120 (122)
33 smart00591 RWD domain in RING 96.3 0.026 5.6E-07 37.2 7.1 27 46-72 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.9 0.098 2.1E-06 37.9 8.6 62 51-112 56-126 (162)
35 PF09765 WD-3: WD-repeat regio 91.9 0.34 7.3E-06 38.4 4.8 85 4-111 102-187 (291)
36 KOG4018 Uncharacterized conser 89.7 0.98 2.1E-05 34.1 5.2 62 7-70 8-71 (215)
37 KOG0309 Conserved WD40 repeat- 84.1 5.4 0.00012 35.8 7.3 66 5-72 424-491 (1081)
38 PF14460 Prok-E2_D: Prokaryoti 77.5 4 8.6E-05 29.8 3.9 39 71-112 90-131 (175)
39 KOG0744 AAA+-type ATPase [Post 73.5 4.7 0.0001 32.9 3.6 69 27-114 170-249 (423)
40 TIGR03737 PRTRC_B PRTRC system 70.9 6.4 0.00014 30.1 3.7 41 72-116 132-176 (228)
41 PF06113 BRE: Brain and reprod 67.0 21 0.00046 28.9 6.0 66 30-107 53-121 (333)
42 smart00340 HALZ homeobox assoc 64.1 6.1 0.00013 22.0 1.7 14 3-16 21-34 (44)
43 KOG0177 20S proteasome, regula 61.2 2.3 5.1E-05 31.5 -0.3 33 81-113 135-167 (200)
44 cd00421 intradiol_dioxygenase 55.1 20 0.00043 25.2 3.6 25 46-70 64-89 (146)
45 cd03457 intradiol_dioxygenase_ 52.5 22 0.00048 26.3 3.6 25 46-70 85-109 (188)
46 PRK11700 hypothetical protein; 46.3 1.2E+02 0.0026 22.5 7.0 71 29-105 87-184 (187)
47 PF06113 BRE: Brain and reprod 45.7 53 0.0011 26.7 5.0 28 47-75 305-332 (333)
48 KOG3285 Spindle assembly check 45.0 40 0.00087 25.0 3.8 41 3-43 121-161 (203)
49 cd03459 3,4-PCD Protocatechuat 45.0 35 0.00077 24.5 3.6 25 46-70 71-100 (158)
50 cd05845 Ig2_L1-CAM_like Second 40.3 69 0.0015 20.9 4.2 26 45-72 16-41 (95)
51 KOG4445 Uncharacterized conser 38.2 40 0.00086 27.1 3.1 25 48-72 45-69 (368)
52 PF13950 Epimerase_Csub: UDP-g 37.8 35 0.00076 20.4 2.3 20 91-110 36-55 (62)
53 KOG0662 Cyclin-dependent kinas 36.1 38 0.00083 25.6 2.7 55 62-116 167-225 (292)
54 TIGR02423 protocat_alph protoc 31.7 71 0.0015 23.8 3.5 25 46-70 95-124 (193)
55 COG0544 Tig FKBP-type peptidyl 29.3 1.5E+02 0.0033 25.0 5.4 13 50-62 211-223 (441)
56 cd03463 3,4-PCD_alpha Protocat 29.3 84 0.0018 23.2 3.5 25 46-70 91-120 (185)
57 PF03366 YEATS: YEATS family; 29.2 1.6E+02 0.0034 18.8 4.9 43 31-75 2-44 (84)
58 PF09280 XPC-binding: XPC-bind 28.8 93 0.002 18.5 3.0 22 118-139 33-54 (59)
59 PF12065 DUF3545: Protein of u 28.6 41 0.00089 20.2 1.4 12 4-15 37-48 (59)
60 PF12018 DUF3508: Domain of un 27.4 95 0.0021 24.4 3.7 30 117-146 237-266 (281)
61 PF14135 DUF4302: Domain of un 27.2 2.5E+02 0.0054 21.3 5.9 69 2-81 10-102 (235)
62 cd07981 TAF12 TATA Binding Pro 26.5 1.6E+02 0.0035 18.0 4.7 42 105-146 6-47 (72)
63 PF11333 DUF3135: Protein of u 24.7 1.6E+02 0.0035 18.8 3.8 24 122-145 8-31 (83)
64 PF14455 Metal_CEHH: Predicted 24.3 2.8E+02 0.0061 20.1 5.9 64 5-72 9-76 (177)
65 COG2847 Copper(I)-binding prot 23.8 1.6E+02 0.0035 21.1 4.0 28 32-59 104-131 (151)
66 PF00779 BTK: BTK motif; Inte 23.6 30 0.00066 18.0 0.2 15 73-87 2-17 (32)
67 PF02563 Poly_export: Polysacc 23.2 1.4E+02 0.0031 18.4 3.4 36 77-112 34-69 (82)
68 PF01175 Urocanase: Urocanase; 23.1 1.4E+02 0.003 25.9 4.1 26 121-146 272-297 (546)
69 KOG1047 Bifunctional leukotrie 22.1 96 0.0021 27.1 3.0 29 43-72 248-279 (613)
70 PF04881 Adeno_GP19K: Adenovir 22.0 99 0.0021 21.6 2.5 19 27-45 44-62 (139)
71 COG2819 Predicted hydrolase of 21.7 1.5E+02 0.0032 23.3 3.7 31 42-72 15-47 (264)
72 PF12652 CotJB: CotJB protein; 21.5 2.2E+02 0.0047 18.0 3.9 30 117-146 25-54 (78)
73 PRK05414 urocanate hydratase; 21.5 1.5E+02 0.0032 25.8 3.9 26 121-146 282-307 (556)
74 TIGR02439 catechol_proteo cate 21.3 1.3E+02 0.0029 23.8 3.5 16 46-61 179-194 (285)
75 TIGR01228 hutU urocanate hydra 21.3 1.5E+02 0.0032 25.6 3.9 26 121-146 273-298 (545)
76 PRK15486 hpaC 4-hydroxyphenyla 20.6 55 0.0012 23.7 1.2 69 6-91 6-77 (170)
77 PF00845 Gemini_BL1: Geminivir 20.6 2.5E+02 0.0055 22.0 4.7 47 28-74 100-154 (276)
78 smart00803 TAF TATA box bindin 20.6 2.1E+02 0.0045 17.2 3.6 29 118-146 19-47 (65)
79 PF04314 DUF461: Protein of un 20.5 1.4E+02 0.0029 19.8 3.0 27 32-58 77-103 (110)
80 KOG2019 Metalloendoprotease HM 20.1 2.8E+02 0.006 25.4 5.4 60 74-146 635-697 (998)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-56 Score=309.73 Aligned_cols=148 Identities=78% Similarity=1.410 Sum_probs=146.1
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeC
Q 048404 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~ 80 (148)
||.+||++|+++|++++++|+++.++.+|+++|+++|.||.|||||||+|++.|.||++||+.||+|+|.|+||||||+.
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCcccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhhCC
Q 048404 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 148 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
.|.||+|+|.+.|+|+.++..+|.+|+++|.+||+++|++.++|++|+.|+.+|.+.||+|++||||+
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-54 Score=306.68 Aligned_cols=146 Identities=60% Similarity=1.170 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCC-CcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeC
Q 048404 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~ 80 (148)
|.+||++|+++|++.++.++++.++++ |+++|++.|.||++|+||||.|++.|.||++||++||+|+|.++||||||++
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 678999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCcccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhhC
Q 048404 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|+||+++|.+.|+|++++.+||.+|+++|.+||.++|+|.|||.+|++|+++|.++||++++++|.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
No 3
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.4e-51 Score=294.08 Aligned_cols=147 Identities=74% Similarity=1.328 Sum_probs=144.6
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeC
Q 048404 1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 1 ~a~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~ 80 (148)
||.+||++|+++|++++++++.+.+.++|+++|+++|.||++|+|+||.|++.|.||++||++||+|+|.|+++||||+.
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCcccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhhC
Q 048404 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.||++++.++|+|++|+++||.+|+++|.+|++++|+|.+||++|.+|+++|.++|++|+++||.
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999984
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-52 Score=281.95 Aligned_cols=144 Identities=44% Similarity=0.922 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCC
Q 048404 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~ 81 (148)
|-|||.+|+++|+++++.|++..|.++|++.|.++|.||.+|||+||+|++.|.|+++||..||.|+|.+..||||||.+
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCcccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHh
Q 048404 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 145 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
|.+|+|+|...|+|.|++..||.+||+||.+|++++|+|.|||++|.+|+.+|.++++..+.|.
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998764
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.7e-51 Score=293.19 Aligned_cols=147 Identities=48% Similarity=0.895 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCC
Q 048404 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~ 81 (148)
+.|||++|+++|++++++++.+.+.++|+++|+++|.||+||||+||.|+++|.||++||+.||+|+|.|++|||||+++
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCcccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhhCC
Q 048404 82 GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 148 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|.||+++|.++|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|++|+++||.+
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=262.77 Aligned_cols=144 Identities=39% Similarity=0.844 Sum_probs=137.7
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCC-CcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeC
Q 048404 2 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~ 80 (148)
|...|+++|++|++++.+|+.+..+++ |+++|.|.|.||++|.|+||.|+..+.||.+||.+||+++|.+.+||||||+
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 346799999999999999999998885 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCcc-------------cccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHh
Q 048404 81 NGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 145 (148)
Q Consensus 81 ~G~icl~~l~-------------~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
+|.+|+++|. +.|+|..|+++||++|.+||.+||.++|+|.+||+.|++|+++|.++++.++++.
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999999983 4699999999999999999999999999999999999999999999999999864
No 7
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-45 Score=248.45 Aligned_cols=146 Identities=38% Similarity=0.841 Sum_probs=140.7
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeeeecC-CCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceee
Q 048404 1 MASKRILKELKDLQKDPPTSCSAGPVA-EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~rRL~~E~~~l~~~~~~~~~~~~~~-~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~ 79 (148)
+|+|||.+||++|-.+++.|+.+.|.+ +|+++|.+.|.||++|+|+||.|..++.||.+||.+||+++|...+||||||
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 489999999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecCcc-------------cccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhh
Q 048404 80 SNGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 146 (148)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
++|++|+++|. +.|+|..+++.||+++-+|+.+||-++++|.+|+.++++|+++|.+.++..++|.-
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtL 163 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRKTL 163 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 99999999983 56999999999999999999999999999999999999999999999999998864
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-45 Score=250.28 Aligned_cols=147 Identities=39% Similarity=0.791 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecC-----CCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccc
Q 048404 2 ASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHP 76 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~~~~~~-----~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hp 76 (148)
|+.||+.|-+.+.++.+-|+++.|.. .|++.|.+.|.|+.||+||||.|.+++.||++||.+||+++|..++|||
T Consensus 5 ~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HP 84 (158)
T KOG0424|consen 5 ALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHP 84 (158)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCC
Confidence 67899999999999999999999986 4799999999999999999999999999999999999999999999999
Q ss_pred eeeCCCceeecCcccc--cCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhhCC
Q 048404 77 NINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 148 (148)
Q Consensus 77 nv~~~G~icl~~l~~~--W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
|||++|.||+++|.++ |+|++||.+||..||+||.+||+.+|+|.||...|.+|+.+|+++||.++++||.+
T Consensus 85 NVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 85 NVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 9999999999999765 99999999999999999999999999999999999999999999999999999853
No 9
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.9e-44 Score=255.85 Aligned_cols=139 Identities=58% Similarity=1.134 Sum_probs=135.8
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCCCc
Q 048404 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 4 rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G~ 83 (148)
|||++|+++++++++.|+++.+.++|+++|+++|.||++|+|+||.|++.|.||++||.+||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcccc-cCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHH
Q 048404 84 ICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWT 142 (148)
Q Consensus 84 icl~~l~~~-W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~ 142 (148)
+|++++... |+|++++.+||.+|+++|.+|+.++|+|.+||.+|++|+++|.++|++|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999876 99999999999999999999999999999999999999999999999874
No 10
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-45 Score=260.47 Aligned_cols=147 Identities=46% Similarity=0.831 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHhhcCC---CCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeecccccee
Q 048404 2 ASKRILKELKDLQKDP---PTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNI 78 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~---~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv 78 (148)
|.+|+++|++++.+++ ..++.++.+++|+.+..+.|.||+|||||||.|.+.|++|++||++||+|+|.|.||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999987 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred eC-CCceeecCcccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhhCC
Q 048404 79 NS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 148 (148)
Q Consensus 79 ~~-~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
.+ +|.||+|++.+.|++++|+..+|.+||++|..|++.+|.+.+.|+.|.+|.+.|.+.||.|+..||+|
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 95 99999999999999999999999999999999999999999999999999999999999999999986
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.6e-44 Score=255.85 Aligned_cols=138 Identities=57% Similarity=1.133 Sum_probs=129.0
Q ss_pred HHHHHHHHhhcCCCCCeeeeecCC-CcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCCCc
Q 048404 5 RILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G~ 83 (148)
||++|+++++++++.|+.+.+.++ |+.+|+++|.||++|+|+||.|+++|.||++||++||+|+|.++++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCccc-ccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHH
Q 048404 84 ICLDILKE-QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWT 142 (148)
Q Consensus 84 icl~~l~~-~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~ 142 (148)
+|+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999975 599999999999999999999999999999999999999999999999984
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.5e-43 Score=252.21 Aligned_cols=143 Identities=61% Similarity=1.161 Sum_probs=139.1
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCC-CcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCCC
Q 048404 4 KRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 4 rRL~~E~~~l~~~~~~~~~~~~~~~-n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G 82 (148)
+||++|+++++++++.|+.+.+.++ |+++|+++|.||++|+|+||.|++.|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998875 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCcc-cccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhh
Q 048404 83 SICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 146 (148)
Q Consensus 83 ~icl~~l~-~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.+|++++. ++|+|++++.+||.+|+++|.+|+.++++|.||+.+|.+|+++|+++|+++++|++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999999999999999999999999999999999975
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-44 Score=247.16 Aligned_cols=142 Identities=39% Similarity=0.765 Sum_probs=138.0
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCCC
Q 048404 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 3 ~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G 82 (148)
.|||++|+..|+-...+||++.|.++|++.|.++|.||.+|+|+|..|++.+.||.+||+.||+|+|.++.|||||+..|
T Consensus 31 ~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~G 110 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSG 110 (175)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCcccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHh
Q 048404 83 SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 145 (148)
Q Consensus 83 ~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
.||+|+|.++|+..++++.||++||+++-+||.++|+|..||+++. |.++|++.+.+.-++.
T Consensus 111 nIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 111 NICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999998 9999999998876653
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-40 Score=225.91 Aligned_cols=146 Identities=38% Similarity=0.798 Sum_probs=137.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCee-eeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceee
Q 048404 1 MASKRILKELKDLQKDPPTSCS-AGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN 79 (148)
Q Consensus 1 ~a~rRL~~E~~~l~~~~~~~~~-~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~ 79 (148)
+|.|||.+|+.+|+++....+. +...+.|+..|++.|. |.+.||..|.|.++|.||.+||+.||+|.|.|.||||||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4789999999999998766554 5556789999999997 8999999999999999999999999999999999999999
Q ss_pred CCCceeecCc-ccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhhC
Q 048404 80 SNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 147 (148)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+.|++|+.++ .++|.|+++++++|+.|..++.+|+++.|++.|+|.+|..|+.+|.++|.++++||+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999998 5899999999999999999999999999999999999999999999999999999984
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-38 Score=221.05 Aligned_cols=143 Identities=36% Similarity=0.766 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeC-
Q 048404 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS- 80 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~- 80 (148)
+.||+..|...|... +..+...++++.+++|.+.||.+|+|+||+++++|.+|++||++.|.|.|.++||||||++
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 468999999888774 4558888899999999999999999999999999999999999999999999999999995
Q ss_pred CCceeecCcccccCCCcCHHHHHHH-HHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhhC
Q 048404 81 NGSICLDILKEQWSPALTISKVLLS-ICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 147 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~-l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
+|.+|++.++..|+|.+++..|+.. |-.||..||+.+|+|.|||.+|..++++|+++++++++|||+
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999875 567899999999999999999999999999999999999997
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-36 Score=214.00 Aligned_cols=143 Identities=36% Similarity=0.714 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHhhcCCCCCee----eeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccce
Q 048404 2 ASKRILKELKDLQKDPPTSCS----AGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN 77 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~----~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpn 77 (148)
|.-||++|..++.- +++++ .++.+-+..+..++|. |+++.|+||.|.|.+.+|+.||..||+|++.+.+||||
T Consensus 29 a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPN 105 (184)
T KOG0420|consen 29 ALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPN 105 (184)
T ss_pred HHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCC
Confidence 55677777777655 44444 2233333335889997 99999999999999999999999999999999999999
Q ss_pred eeCCCceeecCcccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhhC
Q 048404 78 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 147 (148)
Q Consensus 78 v~~~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a~ 147 (148)
|+.+|.||+++|+++|+|+.++.+|+-.|+.+|.+|++++|+|.|||.++.+|++.|+.+||.....++.
T Consensus 106 Id~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 106 IDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred cCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998876654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=216.46 Aligned_cols=146 Identities=40% Similarity=0.708 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCCC
Q 048404 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNG 82 (148)
Q Consensus 3 ~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G 82 (148)
+|.|.+|++.|...++.||.+.+.++|+....+.|.||.||||++|.|...+.+..+||.+||+-+|+|.||||||-.+|
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCcccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhhCC
Q 048404 83 SICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 148 (148)
Q Consensus 83 ~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a~~ 148 (148)
+||.+.|..+|+|..+|.+||..|+.++..|++++.+|.||+++..++-++|.+++|.++.-+|++
T Consensus 92 EICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred eehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999888753
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-32 Score=185.96 Aligned_cols=111 Identities=40% Similarity=0.812 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeecc-ccceeeC
Q 048404 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV-FHPNINS 80 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i-~Hpnv~~ 80 (148)
|.+||++|+.+++.+++.|+... +.+|+.+|.+.+.|.+||.|+|..|.+.+.||+.||++.|+|.|..++ .|||||.
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS 94 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS 94 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec
Confidence 78999999999999999999987 778999999999999999999999999999999999999999999885 7999999
Q ss_pred CCceeecCcccccCCCcCHHHHHHHHHHhhcCC
Q 048404 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDP 113 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p 113 (148)
||.||+++|.+.|+|++++.+|.++|.+||.+-
T Consensus 95 NGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 95 NGHICLDILYDSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred CCeEEEEeecccCCcchhhHHHHHHHHHHHccC
Confidence 999999999999999999999999999999853
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.3e-29 Score=181.99 Aligned_cols=112 Identities=36% Similarity=0.780 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCC
Q 048404 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~ 81 (148)
|.|||++||+.|.++|.++|.+.|..+|+.+||.+|.||++|||+||.|+..|.||.+||++||-|+++|| +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 6677778
Q ss_pred CceeecCc---ccccCCCcCHHHHHHHHHHhhcCCCC
Q 048404 82 GSICLDIL---KEQWSPALTISKVLLSICSLLTDPNP 115 (148)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il~~l~~~l~~p~~ 115 (148)
-++|+++- .+.|+|.+++.+||..|.+.|.+-.+
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 89999875 58899999999999999999876443
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.3e-26 Score=166.17 Aligned_cols=139 Identities=25% Similarity=0.438 Sum_probs=127.9
Q ss_pred HHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCC--CCCeeEEeeccccceeeC-C
Q 048404 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPF--KPPKVAFRTKVFHPNINS-N 81 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~--~pP~v~f~~~i~Hpnv~~-~ 81 (148)
-|+.||..+.+...+|+++.|+-.|-+.|.++|.+..| .|.||+|+|+|.+|++||. +-|+|.|.++++||+|.+ +
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 47888999999999999999999999999999997776 5999999999999999996 679999999999999995 9
Q ss_pred CceeecCcccccCCCc-CHHHHHHHHHHhhcCCCCCCC--ccHHHHHHHhHCHHHHHHHHHHHHHH
Q 048404 82 GSICLDILKEQWSPAL-TISKVLLSICSLLTDPNPDDP--LVPEIAHMYKSDKAKYEATARSWTQK 144 (148)
Q Consensus 82 G~icl~~l~~~W~p~~-~i~~il~~l~~~l~~p~~~~~--~n~ea~~~~~~~~~~f~~~~~~~~~~ 144 (148)
+.+|++.....|...- +|+++|.++|..|++|+-..+ .|+||+.+|.+++++|.++|+++++.
T Consensus 102 keLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 102 KELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred cceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999998877798876 599999999999999987766 59999999999999999999999874
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-22 Score=152.19 Aligned_cols=107 Identities=37% Similarity=0.812 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCC
Q 048404 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN 81 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~ 81 (148)
|.|||++|-++|+ ++...+...|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ +..+.-+
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 6899999999999 788888899999999999999999999999999999999999999999999999988 6677778
Q ss_pred CceeecCc---ccccCCCcCHHHHHHHHHHhhc
Q 048404 82 GSICLDIL---KEQWSPALTISKVLLSICSLLT 111 (148)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il~~l~~~l~ 111 (148)
-+||+++- .+.|.|+++|..-|..|..+|-
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 89999886 5889999999999999988885
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6.6e-17 Score=140.76 Aligned_cols=109 Identities=33% Similarity=0.669 Sum_probs=99.7
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeec--cccceeeCC
Q 048404 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSN 81 (148)
Q Consensus 4 rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~--i~Hpnv~~~ 81 (148)
+..+.|++-|....+.++.+...++.+....+.|.|+.||||..|.|.|.+.||.+||.+||.+...+. .++||.|++
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 446778888888999999999999888888899999999999999999999999999999999999875 589999999
Q ss_pred CceeecCcc-------cccCCCcCHHHHHHHHHHhhcC
Q 048404 82 GSICLDILK-------EQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 82 G~icl~~l~-------~~W~p~~~i~~il~~l~~~l~~ 112 (148)
|++|+++|+ +.|+|+.++.++|.+||.|+-+
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 999999994 6799999999999999998864
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.9e-15 Score=128.35 Aligned_cols=111 Identities=41% Similarity=0.727 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeec---cccceee
Q 048404 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK---VFHPNIN 79 (148)
Q Consensus 3 ~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~---i~Hpnv~ 79 (148)
.+|+++|++-+.++.++++.+.+.+..+....+.|.|+.||||++|.|.|.|.||..||..||.+.+.+. .+.||.|
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999977 5899999
Q ss_pred CCCceeecCcc-------cccCCC-cCHHHHHHHHHHhhcCC
Q 048404 80 SNGSICLDILK-------EQWSPA-LTISKVLLSICSLLTDP 113 (148)
Q Consensus 80 ~~G~icl~~l~-------~~W~p~-~~i~~il~~l~~~l~~p 113 (148)
.+|+||+++|- +.|+|. .++.++|.+||.++.+-
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 99999999982 679998 78999999999998753
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.9e-13 Score=94.13 Aligned_cols=108 Identities=31% Similarity=0.541 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcCC-CCCeeeeecC-CC--cceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceee-
Q 048404 5 RILKELKDLQKDP-PTSCSAGPVA-ED--MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN- 79 (148)
Q Consensus 5 RL~~E~~~l~~~~-~~~~~~~~~~-~n--~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~- 79 (148)
||++|+++=++-- +..++....+ +| +..|...|.||+-|+||+.+|.+.|....+||..||+|+|.+.+--.-|+
T Consensus 9 rlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~ 88 (138)
T KOG0896|consen 9 RLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNS 88 (138)
T ss_pred hhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeeccccc
Confidence 6777877776643 3333433333 22 77899999999999999999999999999999999999999999777787
Q ss_pred CCCceeecCc--ccccCCCcCHHHHHHHHHHhhcC
Q 048404 80 SNGSICLDIL--KEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 80 ~~G~icl~~l--~~~W~p~~~i~~il~~l~~~l~~ 112 (148)
.+|.+.-..+ -.+|.-.+++..+|..++.++..
T Consensus 89 ~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 89 SNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred CCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 4777766433 38899999999999999976653
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.8e-09 Score=69.78 Aligned_cols=91 Identities=20% Similarity=0.444 Sum_probs=69.6
Q ss_pred EEEEEEeCCCCCCCCCeeEEeecc-ccceeeCCCceeecCcc-cccCCCcCHHHHHHHHHHhhcCCC--CCCCccHHHHH
Q 048404 50 FLVTIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPN--PDDPLVPEIAH 125 (148)
Q Consensus 50 f~~~i~fp~~yP~~pP~v~f~~~i-~Hpnv~~~G~icl~~l~-~~W~p~~~i~~il~~l~~~l~~p~--~~~~~n~ea~~ 125 (148)
.-+.+.|+++||+.||.+|...|+ --.-|-.+|.||+.++. ++|+.+++++.+++++..++.... .+.+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 467788999999999999998774 44566689999999994 789999999999999999998764 4555655543
Q ss_pred HH--hHCHHHHHHHHHHH
Q 048404 126 MY--KSDKAKYEATARSW 141 (148)
Q Consensus 126 ~~--~~~~~~f~~~~~~~ 141 (148)
+| ..-.+.|+..++..
T Consensus 92 ~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 44 33445566666544
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.82 E-value=1.9e-08 Score=70.58 Aligned_cols=67 Identities=33% Similarity=0.780 Sum_probs=60.8
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeEEeecc---ccceeeCCCceee---cCcccccCCCcCHHHHHHHHHHhhcC
Q 048404 46 AGGVFLVTIHFPPDYPFKPPKVAFRTKV---FHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~~pP~v~f~~~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~il~~l~~~l~~ 112 (148)
.|+.+.+.|.+|+.||..||.|....+. +-|||+.+|.+|+ +..-+.|.|.-.+.++|.+...+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654 6899999999999 67778999999999999999999984
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.48 E-value=6.3e-07 Score=61.97 Aligned_cols=80 Identities=23% Similarity=0.540 Sum_probs=53.9
Q ss_pred ceEEEEEECCCCCCCCCCEE--EEEEEeCCCCCCCCCeeEEeecc-----ccceeeCCCceeecCcccccCC-CcCHHHH
Q 048404 31 FHWQATIMGPPDSPYAGGVF--LVTIHFPPDYPFKPPKVAFRTKV-----FHPNINSNGSICLDILKEQWSP-ALTISKV 102 (148)
Q Consensus 31 ~~w~~~i~gp~~t~y~g~~f--~~~i~fp~~yP~~pP~v~f~~~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~i~~i 102 (148)
.+--+.+.|--.-.|.|..| .+.|-+|.+||.+||.+...... -+.+|+.+|++.+..+ ++|++ ..++.++
T Consensus 29 ~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~l 107 (121)
T PF05743_consen 29 SKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVDL 107 (121)
T ss_dssp EEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHHH
T ss_pred hheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHHH
Confidence 33334444422235888887 56777999999999999875321 2449999999998888 78988 7789999
Q ss_pred HHHHHHhhc
Q 048404 103 LLSICSLLT 111 (148)
Q Consensus 103 l~~l~~~l~ 111 (148)
+..|...|.
T Consensus 108 v~~l~~~F~ 116 (121)
T PF05743_consen 108 VQELQAVFS 116 (121)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHHHh
Confidence 999998886
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.39 E-value=3.4e-07 Score=64.02 Aligned_cols=95 Identities=22% Similarity=0.371 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCE----------EEEEEEeCCCCCCCCCeeEEeec
Q 048404 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 3 ~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~----------f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
..||..||..|-+ +++.++++-..|.-.=.-+.||.+.|.+ |.+++.+|..||..||+|....-
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 4799999999866 3433443444454333346666666655 66778889999999999987532
Q ss_pred -cccceeeCCCceeecCcc-ccc---CCCcCHHHHH
Q 048404 73 -VFHPNINSNGSICLDILK-EQW---SPALTISKVL 103 (148)
Q Consensus 73 -i~Hpnv~~~G~icl~~l~-~~W---~p~~~i~~il 103 (148)
--....|.+|+||++... .-| .|.++|.+.+
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 235567789999998764 445 5667777654
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=5.8e-05 Score=52.21 Aligned_cols=94 Identities=21% Similarity=0.372 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCE----------EEEEEEeCCCCCCCCCeeEEeec
Q 048404 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV----------FLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 3 ~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~----------f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
..||..||+.|.. +++...++-..|.-.=..+.||.|-|.+ |-+++.+|-.||..+|+|....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 4799999999876 4444455555665444458899888887 66677789999999999976421
Q ss_pred -cccceeeCCCceeecCc-ccccC---CCcCHHHH
Q 048404 73 -VFHPNINSNGSICLDIL-KEQWS---PALTISKV 102 (148)
Q Consensus 73 -i~Hpnv~~~G~icl~~l-~~~W~---p~~~i~~i 102 (148)
--.-..|.+|.||+.-. ..-|. |..++.+.
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha 137 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHA 137 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHH
Confidence 12335667999999644 45575 44454443
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0011 Score=52.90 Aligned_cols=76 Identities=22% Similarity=0.534 Sum_probs=58.7
Q ss_pred EECCCCCCCCCCEEE--EEEEeCCCCCCCCCeeEEeec-----cccceeeCCCceeecCcccccCC-CcCHHHHHHHHHH
Q 048404 37 IMGPPDSPYAGGVFL--VTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDILKEQWSP-ALTISKVLLSICS 108 (148)
Q Consensus 37 i~gp~~t~y~g~~f~--~~i~fp~~yP~~pP~v~f~~~-----i~Hpnv~~~G~icl~~l~~~W~p-~~~i~~il~~l~~ 108 (148)
+.|---++|.|.+|. +.|-+.+.||..||.+..... --|-||+++|.|.+..| .+|.+ +.++..+++-|-+
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a 133 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIA 133 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHH
Confidence 334334578888865 566689999999999966421 14899999999999999 67975 5679999998888
Q ss_pred hhcCC
Q 048404 109 LLTDP 113 (148)
Q Consensus 109 ~l~~p 113 (148)
.|.++
T Consensus 134 ~f~~~ 138 (365)
T KOG2391|consen 134 AFSED 138 (365)
T ss_pred HhcCC
Confidence 88754
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.96 E-value=0.0041 Score=41.41 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEEC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeecc
Q 048404 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKV 73 (148)
Q Consensus 3 ~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~g--p~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i 73 (148)
..+.+.|+..|+..-+... ......+...+.+.+.. ...+.-....+.+.+.||++||..+|.|...+..
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3467788888888544433 23334455566666632 2344455668999999999999999999877553
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.85 E-value=0.016 Score=40.04 Aligned_cols=90 Identities=21% Similarity=0.386 Sum_probs=61.3
Q ss_pred CCeeeeecCCCcceEEEEEEC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCCCce--eecC------
Q 048404 19 TSCSAGPVAEDMFHWQATIMG--PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSI--CLDI------ 88 (148)
Q Consensus 19 ~~~~~~~~~~n~~~w~~~i~g--p~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G~i--cl~~------ 88 (148)
.|+..+.+.+.-..|.+ |.| -+.+.|.+..-.+-|.+|..||..+|-+.+..|-.... .+|.+ |-+.
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G 88 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDG 88 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCC
Confidence 45566666666677766 656 44556999999999999999999999887775522111 12223 3221
Q ss_pred --------cccccCCCcC-HHHHHHHHHHhhc
Q 048404 89 --------LKEQWSPALT-ISKVLLSICSLLT 111 (148)
Q Consensus 89 --------l~~~W~p~~~-i~~il~~l~~~l~ 111 (148)
....|.|..+ +.+.|..|...|.
T Consensus 89 ~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 89 RTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 1245999874 8888888887764
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.35 E-value=0.026 Score=37.15 Aligned_cols=27 Identities=15% Similarity=0.408 Sum_probs=22.7
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeEEeec
Q 048404 46 AGGVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
....+.+.+.||.+||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999987753
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.88 E-value=0.098 Score=37.93 Aligned_cols=62 Identities=32% Similarity=0.483 Sum_probs=49.3
Q ss_pred EEEEEeCCCCCCCCCeeEEeecc---ccceeeCC-----CceeecCcc-cccCCCcCHHHHHHHHHHhhcC
Q 048404 51 LVTIHFPPDYPFKPPKVAFRTKV---FHPNINSN-----GSICLDILK-EQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 51 ~~~i~fp~~yP~~pP~v~f~~~i---~Hpnv~~~-----G~icl~~l~-~~W~p~~~i~~il~~l~~~l~~ 112 (148)
.+.|.|+.+||..+|.+.+.... .+||++.. ..+|+---. ..|.+..++..+|..|...|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 46789999999999988777653 25888866 779985442 5689999999999999988864
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=91.89 E-value=0.34 Score=38.41 Aligned_cols=85 Identities=20% Similarity=0.445 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeeccccceeeCCCc
Q 048404 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGS 83 (148)
Q Consensus 4 rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G~ 83 (148)
++|.+|++++..+... .+ ..++++....+.+. -+...+.++|.++.+||.++|.+...-|+
T Consensus 102 s~ll~EIe~IGW~kl~--~i-~~d~~ls~i~l~~~------D~~R~H~l~l~l~~~yp~~~p~~~~~~P~---------- 162 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLV--QI-QFDDDLSTIKLKIF------DSSRQHYLELKLPSNYPFEPPSCSLDLPI---------- 162 (291)
T ss_dssp -CHHHHHHHHHCGCCE--EE-EE-CCCSEEEEEEE------TTCEEEEEEEETTTTTTTSEEEECS-TTS----------
T ss_pred HHHHHHHHHhccccce--EE-ecCCCccEEEEEEE------cCCceEEEEEEECCCCCCCCceeeCCCCc----------
Confidence 5678888887664322 11 13577888888887 22367889999999999999975432221
Q ss_pred eeecCcccccCC-CcCHHHHHHHHHHhhc
Q 048404 84 ICLDILKEQWSP-ALTISKVLLSICSLLT 111 (148)
Q Consensus 84 icl~~l~~~W~p-~~~i~~il~~l~~~l~ 111 (148)
.+...|.+ ..++.+++.+.+..+.
T Consensus 163 ----~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 ----PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp -----HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ----chhhhhcccccCHHHHHHHHHHHHH
Confidence 12356888 6778887777666654
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.72 E-value=0.98 Score=34.09 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCC--CCCCCEEEEEEEeCCCCCCCCCeeEEe
Q 048404 7 LKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDS--PYAGGVFLVTIHFPPDYPFKPPKVAFR 70 (148)
Q Consensus 7 ~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t--~y~g~~f~~~i~fp~~yP~~pP~v~f~ 70 (148)
.+|+..|...-+.... ...+.+...+.+.|.-..|. -+.| .+.+.+.++++||+.+|.|.+.
T Consensus 8 e~E~EaLeSIY~de~~-~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 8 EEELEALESIYPDEFK-HINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHhccchhh-hhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 3566666664333221 11223333355666532222 2333 7889999999999999999443
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.08 E-value=5.4 Score=35.79 Aligned_cols=66 Identities=12% Similarity=0.218 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCE-EEEEEEeCCCCCC-CCCeeEEeec
Q 048404 5 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGV-FLVTIHFPPDYPF-KPPKVAFRTK 72 (148)
Q Consensus 5 RL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~-f~~~i~fp~~yP~-~pP~v~f~~~ 72 (148)
-|..|+..|-.. ...+.++-.+..-..-.+.+.+|.-.. .|-+ .++.|.||.+||. .+|.+.|..+
T Consensus 424 nLgeE~S~Ig~k-~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGVK-IRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhcc-ccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 355566555432 233444433333456667777755443 3333 4788999999999 5799999755
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=77.48 E-value=4 Score=29.78 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=23.8
Q ss_pred ecccc---ceeeCCCceeecCcccccCCCcCHHHHHHHHHHhhcC
Q 048404 71 TKVFH---PNINSNGSICLDILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 71 ~~i~H---pnv~~~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~ 112 (148)
|++|| +||+.+|.||+.... .|.....+.+..+...|.+
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~ 131 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFN 131 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhC
Confidence 34555 489999999997642 2444444445666555543
No 39
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=73.45 E-value=4.7 Score=32.91 Aligned_cols=69 Identities=19% Similarity=0.380 Sum_probs=46.1
Q ss_pred CCCcceEE--EEEECCCCCCCCCCE-------EEEEEEeCCCCCCCCCeeEEeeccccceeeCCCceeecCcccccCCCc
Q 048404 27 AEDMFHWQ--ATIMGPPDSPYAGGV-------FLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPAL 97 (148)
Q Consensus 27 ~~n~~~w~--~~i~gp~~t~y~g~~-------f~~~i~fp~~yP~~pP~v~f~~~i~Hpnv~~~G~icl~~l~~~W~p~~ 97 (148)
+.|+-.|+ +.++||+|| |.+ =++.|...+.|+..- .|... |. .+..+|-...
T Consensus 170 ntnlIt~NRliLlhGPPGT---GKTSLCKaLaQkLSIR~~~~y~~~~-liEin--------------sh-sLFSKWFsES 230 (423)
T KOG0744|consen 170 NTNLITWNRLILLHGPPGT---GKTSLCKALAQKLSIRTNDRYYKGQ-LIEIN--------------SH-SLFSKWFSES 230 (423)
T ss_pred CCceeeeeeEEEEeCCCCC---ChhHHHHHHHHhheeeecCccccce-EEEEe--------------hh-HHHHHHHhhh
Confidence 46788886 667999999 444 568888888887642 11111 11 2346775443
Q ss_pred --CHHHHHHHHHHhhcCCC
Q 048404 98 --TISKVLLSICSLLTDPN 114 (148)
Q Consensus 98 --~i~~il~~l~~~l~~p~ 114 (148)
-+..++..|+.++.+++
T Consensus 231 gKlV~kmF~kI~ELv~d~~ 249 (423)
T KOG0744|consen 231 GKLVAKMFQKIQELVEDRG 249 (423)
T ss_pred hhHHHHHHHHHHHHHhCCC
Confidence 37888899999998764
No 40
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=70.86 E-value=6.4 Score=30.14 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=27.3
Q ss_pred cccc---ceeeCCCceeecCcccccCCCc-CHHHHHHHHHHhhcCCCCC
Q 048404 72 KVFH---PNINSNGSICLDILKEQWSPAL-TISKVLLSICSLLTDPNPD 116 (148)
Q Consensus 72 ~i~H---pnv~~~G~icl~~l~~~W~p~~-~i~~il~~l~~~l~~p~~~ 116 (148)
++|| +||+++|.||+.... .|.. ++.+ +....+.|.+-.+.
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S~FT 176 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSSRFT 176 (228)
T ss_pred eeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCCccc
Confidence 3555 389999999997653 4543 4666 77777777654433
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=66.97 E-value=21 Score=28.90 Aligned_cols=66 Identities=24% Similarity=0.490 Sum_probs=43.0
Q ss_pred cceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEe-eccccceeeCCCceeecCcccccCCCc--CHHHHHHHH
Q 048404 30 MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFR-TKVFHPNINSNGSICLDILKEQWSPAL--TISKVLLSI 106 (148)
Q Consensus 30 ~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~-~~i~Hpnv~~~G~icl~~l~~~W~p~~--~i~~il~~l 106 (148)
...+.+.| ||.|...+-+|.|...+|..||-+.|. ..-|+|... . +..+ .+|++.- .+..++..|
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL 120 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISEL 120 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHH
Confidence 33455555 589999999999999999999999996 334777321 1 1222 5787653 244444433
Q ss_pred H
Q 048404 107 C 107 (148)
Q Consensus 107 ~ 107 (148)
.
T Consensus 121 ~ 121 (333)
T PF06113_consen 121 R 121 (333)
T ss_pred H
Confidence 3
No 42
>smart00340 HALZ homeobox associated leucin zipper.
Probab=64.14 E-value=6.1 Score=22.04 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhcC
Q 048404 3 SKRILKELKDLQKD 16 (148)
Q Consensus 3 ~rRL~~E~~~l~~~ 16 (148)
.|||++|+.+|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999874
No 43
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.23 E-value=2.3 Score=31.53 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=28.0
Q ss_pred CCceeecCcccccCCCcCHHHHHHHHHHhhcCC
Q 048404 81 NGSICLDILKEQWSPALTISKVLLSICSLLTDP 113 (148)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p 113 (148)
.+.+|++++.+.|+|.+|.++-+.-++.++.+-
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El 167 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVLEL 167 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHH
Confidence 567999999999999999999888887776543
No 44
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=55.15 E-value=20 Score=25.23 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=22.4
Q ss_pred CCCEEEEEEEeCCCCC-CCCCeeEEe
Q 048404 46 AGGVFLVTIHFPPDYP-FKPPKVAFR 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP-~~pP~v~f~ 70 (148)
+.|.|.|.-.+|..|| ..||-|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 4588999999999999 999999876
No 45
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=52.46 E-value=22 Score=26.29 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.6
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeEEe
Q 048404 46 AGGVFLVTIHFPPDYPFKPPKVAFR 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~~pP~v~f~ 70 (148)
+.|.|.|+-.+|--||..+|-|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4578999999999999999999886
No 46
>PRK11700 hypothetical protein; Provisional
Probab=46.26 E-value=1.2e+02 Score=22.53 Aligned_cols=71 Identities=20% Similarity=0.470 Sum_probs=45.5
Q ss_pred CcceEEEE---EECCCCCCC-CCCEEEEEEEeCC--------------CCCCCCCeeEEe--ec------cccceee-CC
Q 048404 29 DMFHWQAT---IMGPPDSPY-AGGVFLVTIHFPP--------------DYPFKPPKVAFR--TK------VFHPNIN-SN 81 (148)
Q Consensus 29 n~~~w~~~---i~gp~~t~y-~g~~f~~~i~fp~--------------~yP~~pP~v~f~--~~------i~Hpnv~-~~ 81 (148)
.+..|.+. +.-|.+..| .-|.=++++.+|. +.|..++-|++. +| .-+|-|- ++
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 35556543 444655555 6677889999883 344455545543 33 4678887 69
Q ss_pred CceeecCcccccCCCcCHHHHHHH
Q 048404 82 GSICLDILKEQWSPALTISKVLLS 105 (148)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~ 105 (148)
|.+|+... .+++.+|+.+
T Consensus 167 ~~vcIK~H------P~slk~IV~S 184 (187)
T PRK11700 167 GGICIKFH------PHSIKEIVAS 184 (187)
T ss_pred CCEEEEEc------CccHHHHHHh
Confidence 99999876 3567777654
No 47
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=45.72 E-value=53 Score=26.66 Aligned_cols=28 Identities=29% Similarity=0.654 Sum_probs=22.9
Q ss_pred CCEEEEEEEeCCCCCCCCCeeEEeecccc
Q 048404 47 GGVFLVTIHFPPDYPFKPPKVAFRTKVFH 75 (148)
Q Consensus 47 g~~f~~~i~fp~~yP~~pP~v~f~~~i~H 75 (148)
+-.|-+++.+|..||...|.++|.+- ||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS~-yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQSV-YH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEee-cc
Confidence 34588889999999999999999853 44
No 48
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.00 E-value=40 Score=24.96 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCC
Q 048404 3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDS 43 (148)
Q Consensus 3 ~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t 43 (148)
.+|+++|++++.++-...++..|.-+-.-.+.+.++-..++
T Consensus 121 ~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~ 161 (203)
T KOG3285|consen 121 LKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT 161 (203)
T ss_pred HHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc
Confidence 68999999999999888888888887778888888755544
No 49
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=44.98 E-value=35 Score=24.47 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.0
Q ss_pred CCCEEEEEEEeCCCCC-----CCCCeeEEe
Q 048404 46 AGGVFLVTIHFPPDYP-----FKPPKVAFR 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP-----~~pP~v~f~ 70 (148)
+.|.|.|+-.+|..|| ..||-|.|.
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 4578999999999999 799999876
No 50
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=40.31 E-value=69 Score=20.86 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=21.6
Q ss_pred CCCCEEEEEEEeCCCCCCCCCeeEEeec
Q 048404 45 YAGGVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 45 y~g~~f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
-+|..+.|...-|+.|| .|+|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46788888888899999 489999865
No 51
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=38.15 E-value=40 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.4
Q ss_pred CEEEEEEEeCCCCCCCCCeeEEeec
Q 048404 48 GVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 48 ~~f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
.++.+.+..+..||...|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4588999999999999999998876
No 52
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=37.81 E-value=35 Score=20.38 Aligned_cols=20 Identities=10% Similarity=0.371 Sum_probs=12.9
Q ss_pred cccCCCcCHHHHHHHHHHhh
Q 048404 91 EQWSPALTISKVLLSICSLL 110 (148)
Q Consensus 91 ~~W~p~~~i~~il~~l~~~l 110 (148)
-+|.|.++|.+++.......
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 47999999999998876644
No 53
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=36.13 E-value=38 Score=25.58 Aligned_cols=55 Identities=29% Similarity=0.554 Sum_probs=42.9
Q ss_pred CCCCeeEEeeccccceee--CCCceeecCccccc--CCCcCHHHHHHHHHHhhcCCCCC
Q 048404 62 FKPPKVAFRTKVFHPNIN--SNGSICLDILKEQW--SPALTISKVLLSICSLLTDPNPD 116 (148)
Q Consensus 62 ~~pP~v~f~~~i~Hpnv~--~~G~icl~~l~~~W--~p~~~i~~il~~l~~~l~~p~~~ 116 (148)
..||.|.|-...|.-.|+ +.|-|--++.+.+| -|+-++.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 379999999999998888 45655545556677 58888999999999988877533
No 54
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=31.67 E-value=71 Score=23.77 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=20.3
Q ss_pred CCCEEEEEEEeCCCCCC-----CCCeeEEe
Q 048404 46 AGGVFLVTIHFPPDYPF-----KPPKVAFR 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~-----~pP~v~f~ 70 (148)
+.|.|.|+-..|..||. .||-|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 45779999999999998 77777654
No 55
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=29.34 E-value=1.5e+02 Score=25.00 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=11.6
Q ss_pred EEEEEEeCCCCCC
Q 048404 50 FLVTIHFPPDYPF 62 (148)
Q Consensus 50 f~~~i~fp~~yP~ 62 (148)
..+.++||++|+.
T Consensus 211 k~i~vtFP~dy~a 223 (441)
T COG0544 211 KDIKVTFPEDYHA 223 (441)
T ss_pred eEEEEEcccccch
Confidence 6688999999998
No 56
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=29.30 E-value=84 Score=23.21 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=19.3
Q ss_pred CCCEEEEEEEeCCCCCC-----CCCeeEEe
Q 048404 46 AGGVFLVTIHFPPDYPF-----KPPKVAFR 70 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP~-----~pP~v~f~ 70 (148)
+.|.|.|+-.+|..||. .||-|.|.
T Consensus 91 ~~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 91 ADGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34779999999999995 66666553
No 57
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=29.19 E-value=1.6e+02 Score=18.75 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=29.0
Q ss_pred ceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeecccc
Q 048404 31 FHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFH 75 (148)
Q Consensus 31 ~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~i~H 75 (148)
..|.+.+.|+.+.....-+=++...+...|+. |...+..+.|.
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPFe 44 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPFE 44 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTEE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCCE
Confidence 47999999987765566677888888888776 66666666443
No 58
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=28.78 E-value=93 Score=18.49 Aligned_cols=22 Identities=5% Similarity=0.209 Sum_probs=18.9
Q ss_pred CccHHHHHHHhHCHHHHHHHHH
Q 048404 118 PLVPEIAHMYKSDKAKYEATAR 139 (148)
Q Consensus 118 ~~n~ea~~~~~~~~~~f~~~~~ 139 (148)
..|++.+.+..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 3689999999999999988764
No 59
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=28.63 E-value=41 Score=20.17 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhc
Q 048404 4 KRILKELKDLQK 15 (148)
Q Consensus 4 rRL~~E~~~l~~ 15 (148)
+||++|+.++--
T Consensus 37 ~rL~kEL~d~D~ 48 (59)
T PF12065_consen 37 QRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHccc
Confidence 678888888754
No 60
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=27.43 E-value=95 Score=24.36 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=26.3
Q ss_pred CCccHHHHHHHhHCHHHHHHHHHHHHHHhh
Q 048404 117 DPLVPEIAHMYKSDKAKYEATARSWTQKYA 146 (148)
Q Consensus 117 ~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
...+++|+..|.++++.|.+.+.+.+++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 347889999999999999999999988754
No 61
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=27.21 E-value=2.5e+02 Score=21.26 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCC-------------------C-
Q 048404 2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDY-------------------P- 61 (148)
Q Consensus 2 a~rRL~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~y-------------------P- 61 (148)
+..||...++++++.. .+...-|.+.+. |.+..--|| |.+.++|.++= -
T Consensus 10 ~~eR~~e~~~~~k~~L---------~~a~~GW~~~yy-p~~~~~~GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~ 78 (235)
T PF14135_consen 10 PAERINEALAEYKKIL---------TSAPNGWKLEYY-PKTDQSYGG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRL 78 (235)
T ss_pred HHHHHHHHHHHHHHHH---------hcCCCceEEEEE-CCCCccCCc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEE
Confidence 4578888777777621 122233777776 333321233 77777776543 1
Q ss_pred --CCCCeeEEee--ccccceeeCC
Q 048404 62 --FKPPKVAFRT--KVFHPNINSN 81 (148)
Q Consensus 62 --~~pP~v~f~~--~i~Hpnv~~~ 81 (148)
..-|.+.|.+ ++.|-..++.
T Consensus 79 ~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 79 KQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred ecCCceEEEEEeCCceEEEccCCC
Confidence 1337777775 3667666653
No 62
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=26.49 E-value=1.6e+02 Score=17.96 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=30.5
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhh
Q 048404 105 SICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 146 (148)
Q Consensus 105 ~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++..-++...+.++|...+.+--+.|...+-..+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655666778899998888888888887777665554
No 63
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=24.66 E-value=1.6e+02 Score=18.78 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=18.8
Q ss_pred HHHHHHhHCHHHHHHHHHHHHHHh
Q 048404 122 EIAHMYKSDKAKYEATARSWTQKY 145 (148)
Q Consensus 122 ea~~~~~~~~~~f~~~~~~~~~~~ 145 (148)
+...++++|+++|.+..++..+..
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~ 31 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEM 31 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHH
Confidence 566788999999998888776643
No 64
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=24.30 E-value=2.8e+02 Score=20.09 Aligned_cols=64 Identities=11% Similarity=0.240 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCC----CCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEeec
Q 048404 5 RILKELKDLQKDP----PTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK 72 (148)
Q Consensus 5 RL~~E~~~l~~~~----~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~~~ 72 (148)
..-+|.+.+.... -.|+.+ .+.++=...+++..|+-.|- --...+++.| .||-..||.|.|..+
T Consensus 9 kFdR~V~~~~~~~~a~r~rgwfL--iqa~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 9 KFDRQVGRFRPRADAYRMRGWFL--IQASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHhhhhhhhhHhhhcCeEE--EEccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 3667777776643 234444 34555566666654554441 1223566666 789999999999877
No 65
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=23.81 E-value=1.6e+02 Score=21.10 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=24.8
Q ss_pred eEEEEEECCCCCCCCCCEEEEEEEeCCC
Q 048404 32 HWQATIMGPPDSPYAGGVFLVTIHFPPD 59 (148)
Q Consensus 32 ~w~~~i~gp~~t~y~g~~f~~~i~fp~~ 59 (148)
-.|+.|.|++...-+|..+.+++.|-+.
T Consensus 104 gyHvMlm~lK~pl~eGd~v~vtL~f~~~ 131 (151)
T COG2847 104 GYHVMLMGLKKPLKEGDKVPVTLKFEKA 131 (151)
T ss_pred CEEEEEeccCCCccCCCEEEEEEEEecC
Confidence 3789999999998999999999999765
No 66
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=23.58 E-value=30 Score=18.00 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=8.7
Q ss_pred cccceeeCCCc-eeec
Q 048404 73 VFHPNINSNGS-ICLD 87 (148)
Q Consensus 73 i~Hpnv~~~G~-icl~ 87 (148)
.|||.++.+|+ .|-.
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999997665 5543
No 67
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=23.20 E-value=1.4e+02 Score=18.42 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=24.4
Q ss_pred eeeCCCceeecCcccccCCCcCHHHHHHHHHHhhcC
Q 048404 77 NINSNGSICLDILKEQWSPALTISKVLLSICSLLTD 112 (148)
Q Consensus 77 nv~~~G~icl~~l~~~W~p~~~i~~il~~l~~~l~~ 112 (148)
-|+++|.|-+..+..---...|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 477899999998876666778888887777776655
No 68
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=23.14 E-value=1.4e+02 Score=25.91 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=22.0
Q ss_pred HHHHHHHhHCHHHHHHHHHHHHHHhh
Q 048404 121 PEIAHMYKSDKAKYEATARSWTQKYA 146 (148)
Q Consensus 121 ~ea~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++-.+|+++|.+.+++..+++.
T Consensus 272 eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 272 EEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 46777888999999999999988764
No 69
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=22.09 E-value=96 Score=27.13 Aligned_cols=29 Identities=34% Similarity=0.827 Sum_probs=24.3
Q ss_pred CCCCCCEEEEEEEeCCCCCC---CCCeeEEeec
Q 048404 43 SPYAGGVFLVTIHFPPDYPF---KPPKVAFRTK 72 (148)
Q Consensus 43 t~y~g~~f~~~i~fp~~yP~---~pP~v~f~~~ 72 (148)
+||.=|+|-+ +.+|.+||+ +-|-++|.||
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4788888887 568999999 6799999987
No 70
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.99 E-value=99 Score=21.64 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.4
Q ss_pred CCCcceEEEEEECCCCCCC
Q 048404 27 AEDMFHWQATIMGPPDSPY 45 (148)
Q Consensus 27 ~~n~~~w~~~i~gp~~t~y 45 (148)
..|...|.|++.|++||+.
T Consensus 44 PGd~~~ytVtV~G~dGs~~ 62 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIR 62 (139)
T ss_pred CCCCcceEEEEECCCCcce
Confidence 3677888999999998865
No 71
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.69 E-value=1.5e+02 Score=23.34 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCCCCCEEEEEEEeCCCCCCCC--CeeEEeec
Q 048404 42 DSPYAGGVFLVTIHFPPDYPFKP--PKVAFRTK 72 (148)
Q Consensus 42 ~t~y~g~~f~~~i~fp~~yP~~p--P~v~f~~~ 72 (148)
.+.+.|..|++.+..|.+||..- |.|.|...
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDG 47 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLDG 47 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEecc
Confidence 45688999999999999999988 99998743
No 72
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.50 E-value=2.2e+02 Score=17.97 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=24.5
Q ss_pred CCccHHHHHHHhHCHHHHHHHHHHHHHHhh
Q 048404 117 DPLVPEIAHMYKSDKAKYEATARSWTQKYA 146 (148)
Q Consensus 117 ~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|-+.+|.+.|.+-.++..+..+++.++|.
T Consensus 25 HP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 25 HPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567889999998888888888888887774
No 73
>PRK05414 urocanate hydratase; Provisional
Probab=21.46 E-value=1.5e+02 Score=25.77 Aligned_cols=26 Identities=15% Similarity=0.223 Sum_probs=22.3
Q ss_pred HHHHHHHhHCHHHHHHHHHHHHHHhh
Q 048404 121 PEIAHMYKSDKAKYEATARSWTQKYA 146 (148)
Q Consensus 121 ~ea~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++-.+|+++|.+.++++.+++.
T Consensus 282 ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 282 EEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 47778889999999999999988764
No 74
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=21.33 E-value=1.3e+02 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=14.0
Q ss_pred CCCEEEEEEEeCCCCC
Q 048404 46 AGGVFLVTIHFPPDYP 61 (148)
Q Consensus 46 ~g~~f~~~i~fp~~yP 61 (148)
+.|.|.|+-.+|..||
T Consensus 179 ~~G~y~F~TI~P~~Yp 194 (285)
T TIGR02439 179 AEGRYRARSIVPSGYG 194 (285)
T ss_pred CCCCEEEEEECCCCCc
Confidence 4577999999999997
No 75
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=21.32 E-value=1.5e+02 Score=25.64 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=22.1
Q ss_pred HHHHHHHhHCHHHHHHHHHHHHHHhh
Q 048404 121 PEIAHMYKSDKAKYEATARSWTQKYA 146 (148)
Q Consensus 121 ~ea~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.|+.++-.+|+++|.+.+++..+++.
T Consensus 273 ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 273 EDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 47777888999999999999988764
No 76
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=20.64 E-value=55 Score=23.75 Aligned_cols=69 Identities=17% Similarity=0.302 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCCCCeeeeecCCCcceEEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCeeEEe---eccccceeeCCC
Q 048404 6 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFR---TKVFHPNINSNG 82 (148)
Q Consensus 6 L~~E~~~l~~~~~~~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~f~~~i~fp~~yP~~pP~v~f~---~~i~Hpnv~~~G 82 (148)
+..++++.+..-..|+++....++ +.+ .|-+-.--..+. .+||.|-+. +..-|+-+..+|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i~~sg 68 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVFQGNG 68 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHHHhCC
Confidence 456788888888888887543221 111 121111111121 369999885 335688899999
Q ss_pred ceeecCccc
Q 048404 83 SICLDILKE 91 (148)
Q Consensus 83 ~icl~~l~~ 91 (148)
.+|+++|.+
T Consensus 69 ~F~VnvL~~ 77 (170)
T PRK15486 69 KLCINVLNH 77 (170)
T ss_pred eEEEEEChh
Confidence 999999953
No 77
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=20.61 E-value=2.5e+02 Score=21.95 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=33.0
Q ss_pred CCcceEEEEEECCCCCCCCCC---EEEEEEEeC-----CCCCCCCCeeEEeeccc
Q 048404 28 EDMFHWQATIMGPPDSPYAGG---VFLVTIHFP-----PDYPFKPPKVAFRTKVF 74 (148)
Q Consensus 28 ~n~~~w~~~i~gp~~t~y~g~---~f~~~i~fp-----~~yP~~pP~v~f~~~i~ 74 (148)
.|..-|.+.....+.-..+|- .|+..|++. .+-|+.+|+|+.+++-|
T Consensus 100 KDp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 100 KDPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 456678888875444444443 366777765 68999999999988744
No 78
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=20.55 E-value=2.1e+02 Score=17.18 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=23.7
Q ss_pred CccHHHHHHHhHCHHHHHHHHHHHHHHhh
Q 048404 118 PLVPEIAHMYKSDKAKYEATARSWTQKYA 146 (148)
Q Consensus 118 ~~n~ea~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
.++.+++..+..+-+.|.+.+-+.+.+|+
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999998988888888887777765
No 79
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=20.46 E-value=1.4e+02 Score=19.79 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=21.9
Q ss_pred eEEEEEECCCCCCCCCCEEEEEEEeCC
Q 048404 32 HWQATIMGPPDSPYAGGVFLVTIHFPP 58 (148)
Q Consensus 32 ~w~~~i~gp~~t~y~g~~f~~~i~fp~ 58 (148)
-+|+.+.|++..+=+|..+.++|.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 478999998888899999999999964
No 80
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=20.09 E-value=2.8e+02 Score=25.42 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=44.4
Q ss_pred ccceeeC-C--CceeecCcccccCCCcCHHHHHHHHHHhhcCCCCCCCccHHHHHHHhHCHHHHHHHHHHHHHHhh
Q 048404 74 FHPNINS-N--GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 146 (148)
Q Consensus 74 ~Hpnv~~-~--G~icl~~l~~~W~p~~~i~~il~~l~~~l~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~~~a 146 (148)
-||.+.+ + ..-|+.+...+|.-.....+++.-+-.+|.+++++ |.+.|+..++..+.+.+
T Consensus 635 ~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~-------------n~dkfkvlvk~s~s~~~ 697 (998)
T KOG2019|consen 635 VSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFT-------------NQDKFKVLVKQSASRMT 697 (998)
T ss_pred ecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcc-------------cHHHHHHHHHHHHHHhh
Confidence 3777764 2 34777777899999998999999899999998874 45666666666665543
Done!