Query 048406
Match_columns 114
No_of_seqs 102 out of 1776
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:14:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0027 Calmodulin and related 99.8 1.3E-17 2.8E-22 101.6 10.0 96 3-100 49-149 (151)
2 COG5126 FRQ1 Ca2+-binding prot 99.8 1.9E-17 4.1E-22 100.5 10.4 97 3-102 61-158 (160)
3 KOG0044 Ca2+ sensor (EF-Hand s 99.7 2.2E-16 4.7E-21 98.8 7.9 101 2-102 68-177 (193)
4 PTZ00183 centrin; Provisional 99.7 1.7E-15 3.7E-20 92.3 10.9 97 3-101 58-155 (158)
5 KOG0034 Ca2+/calmodulin-depend 99.7 1E-15 2.2E-20 95.6 8.9 102 2-103 70-178 (187)
6 PTZ00184 calmodulin; Provision 99.7 3E-15 6.4E-20 90.3 10.3 95 3-99 52-147 (149)
7 KOG0027 Calmodulin and related 99.6 9.9E-15 2.2E-19 88.9 9.8 103 3-105 13-118 (151)
8 KOG0028 Ca2+-binding protein ( 99.6 3.6E-14 7.7E-19 85.2 9.6 97 3-101 74-171 (172)
9 COG5126 FRQ1 Ca2+-binding prot 99.6 7.8E-14 1.7E-18 84.8 9.6 103 3-107 25-127 (160)
10 KOG0037 Ca2+-binding protein, 99.5 6.8E-14 1.5E-18 87.9 9.3 93 2-102 98-190 (221)
11 PTZ00183 centrin; Provisional 99.5 1.1E-13 2.3E-18 84.4 9.5 99 3-102 22-120 (158)
12 PTZ00184 calmodulin; Provision 99.5 2.4E-13 5.1E-18 82.0 10.2 98 3-101 16-113 (149)
13 PF13499 EF-hand_7: EF-hand do 99.5 6.2E-14 1.3E-18 74.0 6.5 63 36-98 2-66 (66)
14 KOG0036 Predicted mitochondria 99.4 7.9E-13 1.7E-17 89.8 8.8 93 3-102 56-148 (463)
15 cd05022 S-100A13 S-100A13: S-1 99.4 6.3E-13 1.4E-17 74.0 6.8 68 32-101 6-76 (89)
16 KOG0031 Myosin regulatory ligh 99.4 5.8E-12 1.3E-16 75.4 9.9 96 3-100 37-165 (171)
17 cd05027 S-100B S-100B: S-100B 99.3 1E-11 2.2E-16 69.1 7.8 67 33-101 7-80 (88)
18 KOG0038 Ca2+-binding kinase in 99.3 9.7E-12 2.1E-16 74.0 7.1 100 3-103 76-180 (189)
19 PF13499 EF-hand_7: EF-hand do 99.3 1.1E-11 2.5E-16 65.3 6.5 59 2-60 4-66 (66)
20 KOG0044 Ca2+ sensor (EF-Hand s 99.3 1.3E-11 2.8E-16 77.5 7.6 94 11-106 40-134 (193)
21 KOG0028 Ca2+-binding protein ( 99.3 3.7E-11 8.1E-16 72.4 8.5 99 3-103 38-137 (172)
22 smart00027 EH Eps15 homology d 99.3 3.5E-11 7.6E-16 68.0 8.1 68 31-102 7-74 (96)
23 PLN02964 phosphatidylserine de 99.3 3.6E-11 7.7E-16 87.0 9.7 93 3-101 148-244 (644)
24 cd00052 EH Eps15 homology doma 99.3 2.7E-11 6E-16 63.8 6.8 61 37-101 2-62 (67)
25 cd05029 S-100A6 S-100A6: S-100 99.3 4.4E-11 9.5E-16 66.6 7.3 67 33-101 9-80 (88)
26 cd05025 S-100A1 S-100A1: S-100 99.3 4.5E-11 9.7E-16 67.1 7.4 69 33-101 8-81 (92)
27 cd05026 S-100Z S-100Z: S-100Z 99.3 4.2E-11 9.2E-16 67.3 7.1 69 33-101 9-82 (93)
28 cd05031 S-100A10_like S-100A10 99.2 6.3E-11 1.4E-15 66.8 7.3 70 32-101 6-80 (94)
29 cd00213 S-100 S-100: S-100 dom 99.2 1.4E-10 3.1E-15 64.5 7.4 70 32-101 6-80 (88)
30 PF13833 EF-hand_8: EF-hand do 99.2 1.1E-10 2.4E-15 59.1 6.3 53 47-100 1-53 (54)
31 KOG0037 Ca2+-binding protein, 99.2 3.3E-10 7.1E-15 71.5 8.6 92 3-102 62-154 (221)
32 cd00252 SPARC_EC SPARC_EC; ext 99.2 3.2E-10 6.9E-15 66.1 7.8 64 31-100 45-108 (116)
33 cd00051 EFh EF-hand, calcium b 99.1 5.8E-10 1.3E-14 57.1 7.7 61 36-98 2-62 (63)
34 KOG0030 Myosin essential light 99.1 5.9E-10 1.3E-14 65.8 7.8 84 13-99 64-150 (152)
35 cd05022 S-100A13 S-100A13: S-1 99.1 3.1E-10 6.6E-15 63.2 5.6 62 2-63 12-76 (89)
36 KOG0377 Protein serine/threoni 99.1 1.1E-09 2.4E-14 75.6 9.3 67 34-100 547-615 (631)
37 KOG0030 Myosin essential light 99.1 4.7E-10 1E-14 66.3 6.4 105 3-107 16-123 (152)
38 cd05023 S-100A11 S-100A11: S-1 99.1 1.3E-09 2.8E-14 60.8 7.4 70 32-101 7-81 (89)
39 KOG4223 Reticulocalbin, calume 99.0 7.8E-10 1.7E-14 73.4 6.1 102 3-106 205-311 (325)
40 cd00051 EFh EF-hand, calcium b 99.0 1.6E-09 3.4E-14 55.5 5.7 59 2-60 4-62 (63)
41 PF14658 EF-hand_9: EF-hand do 99.0 2.5E-09 5.5E-14 55.8 6.3 63 38-101 2-65 (66)
42 PF13833 EF-hand_8: EF-hand do 99.0 2.7E-09 5.9E-14 53.9 6.2 51 11-61 1-52 (54)
43 cd05027 S-100B S-100B: S-100B 99.0 2E-09 4.3E-14 59.9 6.1 61 3-63 13-80 (88)
44 cd00252 SPARC_EC SPARC_EC; ext 99.0 1.4E-09 3.1E-14 63.3 5.6 56 2-61 52-107 (116)
45 KOG0041 Predicted Ca2+-binding 99.0 4.2E-09 9E-14 65.9 7.5 71 31-103 96-166 (244)
46 KOG4223 Reticulocalbin, calume 99.0 1.6E-09 3.4E-14 72.0 5.7 108 3-110 168-279 (325)
47 cd00052 EH Eps15 homology doma 99.0 3.4E-09 7.4E-14 55.7 5.9 59 3-63 4-62 (67)
48 cd05026 S-100Z S-100Z: S-100Z 98.9 5.4E-09 1.2E-13 58.8 6.0 61 3-63 15-82 (93)
49 KOG0034 Ca2+/calmodulin-depend 98.9 2E-08 4.3E-13 63.1 8.7 96 3-103 38-135 (187)
50 cd05031 S-100A10_like S-100A10 98.9 7.2E-09 1.6E-13 58.3 5.5 62 3-64 13-81 (94)
51 cd05030 calgranulins Calgranul 98.9 1.4E-08 3.1E-13 56.5 6.5 67 33-101 7-80 (88)
52 cd05025 S-100A1 S-100A1: S-100 98.9 1.2E-08 2.5E-13 57.2 5.9 61 3-63 14-81 (92)
53 KOG0036 Predicted mitochondria 98.8 1.4E-08 3E-13 69.6 6.6 96 3-105 19-115 (463)
54 PLN02964 phosphatidylserine de 98.8 1.2E-08 2.5E-13 74.3 6.5 60 3-62 184-243 (644)
55 cd05029 S-100A6 S-100A6: S-100 98.8 1.8E-08 3.9E-13 56.1 5.9 62 2-63 14-80 (88)
56 PF14658 EF-hand_9: EF-hand do 98.8 3.5E-08 7.6E-13 51.5 6.3 61 2-62 2-64 (66)
57 smart00027 EH Eps15 homology d 98.8 2.5E-08 5.5E-13 56.3 6.3 59 3-63 15-73 (96)
58 PF00036 EF-hand_1: EF hand; 98.8 1.3E-08 2.8E-13 44.9 3.7 26 36-61 2-27 (29)
59 cd05023 S-100A11 S-100A11: S-1 98.8 3.8E-08 8.2E-13 54.9 5.9 61 3-63 14-81 (89)
60 cd00213 S-100 S-100: S-100 dom 98.7 4.1E-08 9E-13 54.5 5.7 61 3-63 13-80 (88)
61 KOG2643 Ca2+ binding protein, 98.7 3.3E-09 7.1E-14 73.0 0.9 98 7-106 208-320 (489)
62 PF00036 EF-hand_1: EF hand; 98.7 4E-08 8.8E-13 43.4 3.6 28 73-100 1-28 (29)
63 cd05024 S-100A10 S-100A10: A s 98.6 7.2E-07 1.6E-11 49.7 7.2 67 33-100 7-76 (91)
64 PF13405 EF-hand_6: EF-hand do 98.5 1.9E-07 4.1E-12 41.8 3.7 29 36-64 2-31 (31)
65 PF12763 EF-hand_4: Cytoskelet 98.5 1.1E-06 2.5E-11 50.2 7.7 65 31-100 7-71 (104)
66 cd05030 calgranulins Calgranul 98.5 3.3E-07 7.2E-12 50.9 5.3 62 2-63 12-80 (88)
67 PF10591 SPARC_Ca_bdg: Secrete 98.5 2.7E-07 5.8E-12 53.6 4.3 65 29-97 49-113 (113)
68 PF14788 EF-hand_10: EF hand; 98.5 1.4E-06 3E-11 43.1 5.8 47 51-99 2-48 (51)
69 PF14788 EF-hand_10: EF hand; 98.5 1.2E-06 2.7E-11 43.3 5.6 50 14-63 1-50 (51)
70 KOG0031 Myosin regulatory ligh 98.5 1.6E-06 3.4E-11 52.4 7.1 64 30-99 28-91 (171)
71 KOG4666 Predicted phosphate ac 98.5 4.9E-07 1.1E-11 60.6 5.4 97 3-103 264-362 (412)
72 PRK12309 transaldolase/EF-hand 98.4 2E-06 4.3E-11 59.8 6.8 57 31-102 331-387 (391)
73 KOG0751 Mitochondrial aspartat 98.4 4.7E-07 1E-11 63.7 3.8 59 3-63 79-137 (694)
74 KOG0041 Predicted Ca2+-binding 98.3 5.6E-06 1.2E-10 52.2 7.4 96 3-98 104-201 (244)
75 KOG0377 Protein serine/threoni 98.3 1.9E-06 4.2E-11 60.0 5.8 62 2-63 551-616 (631)
76 PF13202 EF-hand_5: EF hand; P 98.3 1.4E-06 3.1E-11 37.0 3.2 21 38-58 3-23 (25)
77 KOG0040 Ca2+-binding actin-bun 98.2 4.4E-06 9.4E-11 65.3 7.0 70 33-102 2252-2326(2399)
78 PRK12309 transaldolase/EF-hand 98.2 2.4E-06 5.1E-11 59.4 5.1 48 2-62 338-385 (391)
79 PF13202 EF-hand_5: EF hand; P 98.2 5.4E-06 1.2E-10 35.2 3.6 25 74-98 1-25 (25)
80 KOG0040 Ca2+-binding actin-bun 98.1 1.9E-05 4.2E-10 61.9 8.2 92 2-94 2257-2355(2399)
81 KOG2643 Ca2+ binding protein, 98.1 6.8E-05 1.5E-09 52.3 9.4 92 3-99 291-383 (489)
82 PF10591 SPARC_Ca_bdg: Secrete 98.1 8.2E-07 1.8E-11 51.6 0.1 55 2-58 58-112 (113)
83 PF13405 EF-hand_6: EF-hand do 98.0 1.6E-05 3.4E-10 35.4 3.7 28 73-100 1-28 (31)
84 cd05024 S-100A10 S-100A10: A s 98.0 3.7E-05 8.1E-10 42.8 5.8 60 3-63 13-77 (91)
85 KOG0046 Ca2+-binding actin-bun 97.8 0.00013 2.9E-09 52.0 7.0 70 33-103 18-88 (627)
86 PF09279 EF-hand_like: Phospho 97.8 0.00011 2.4E-09 40.2 5.4 67 35-102 1-71 (83)
87 KOG4251 Calcium binding protei 97.7 4E-05 8.6E-10 50.0 3.5 63 1-63 104-169 (362)
88 PF12763 EF-hand_4: Cytoskelet 97.7 0.0002 4.3E-09 41.0 5.9 58 3-63 15-72 (104)
89 KOG2562 Protein phosphatase 2 97.7 0.00014 3E-09 51.2 6.0 86 10-96 327-420 (493)
90 KOG4251 Calcium binding protei 97.6 0.00011 2.4E-09 48.0 4.0 92 3-96 241-341 (362)
91 KOG4065 Uncharacterized conser 97.6 0.00033 7.2E-09 40.5 5.4 67 32-98 65-143 (144)
92 smart00054 EFh EF-hand, calciu 97.5 0.00016 3.4E-09 30.5 3.1 24 37-60 3-26 (29)
93 smart00054 EFh EF-hand, calciu 97.4 0.00029 6.3E-09 29.6 3.1 27 74-100 2-28 (29)
94 KOG0751 Mitochondrial aspartat 97.3 0.00017 3.7E-09 51.3 2.7 94 2-101 112-208 (694)
95 KOG0169 Phosphoinositide-speci 97.3 0.0022 4.7E-08 47.8 7.7 95 3-103 141-235 (746)
96 KOG4578 Uncharacterized conser 96.9 0.00088 1.9E-08 45.4 3.0 70 33-103 332-401 (421)
97 KOG2562 Protein phosphatase 2 96.9 0.0027 5.8E-08 44.9 5.4 92 4-100 284-379 (493)
98 KOG4578 Uncharacterized conser 96.9 0.0011 2.3E-08 45.1 2.9 61 2-62 337-398 (421)
99 PLN02952 phosphoinositide phos 96.8 0.026 5.6E-07 41.7 9.7 90 11-101 13-111 (599)
100 KOG0038 Ca2+-binding kinase in 96.8 0.0086 1.9E-07 36.3 5.9 61 3-63 113-178 (189)
101 KOG3555 Ca2+-binding proteogly 96.7 0.0042 9E-08 42.6 4.9 68 31-104 247-314 (434)
102 KOG1955 Ral-GTPase effector RA 96.6 0.0077 1.7E-07 43.2 5.8 67 31-101 228-294 (737)
103 KOG3555 Ca2+-binding proteogly 96.3 0.0076 1.6E-07 41.4 4.2 59 2-64 254-312 (434)
104 PF05517 p25-alpha: p25-alpha 95.6 0.18 3.9E-06 30.9 7.5 63 40-102 8-71 (154)
105 KOG4347 GTPase-activating prot 95.5 0.034 7.4E-07 41.1 4.9 60 31-93 552-611 (671)
106 KOG0169 Phosphoinositide-speci 95.2 0.3 6.5E-06 37.0 8.9 99 3-105 177-279 (746)
107 KOG1029 Endocytic adaptor prot 95.1 0.05 1.1E-06 41.3 4.7 68 28-99 189-256 (1118)
108 PF09279 EF-hand_like: Phospho 95.0 0.064 1.4E-06 29.1 3.9 59 3-62 5-69 (83)
109 KOG2243 Ca2+ release channel ( 94.6 0.1 2.2E-06 42.5 5.4 62 40-104 4063-4124(5019)
110 KOG0046 Ca2+-binding actin-bun 94.6 0.15 3.3E-06 37.1 5.9 58 4-62 25-85 (627)
111 KOG4347 GTPase-activating prot 94.2 0.067 1.5E-06 39.6 3.6 54 2-56 559-612 (671)
112 KOG4065 Uncharacterized conser 94.1 0.17 3.6E-06 29.6 4.3 58 2-59 71-142 (144)
113 KOG1265 Phospholipase C [Lipid 94.0 0.59 1.3E-05 36.4 8.0 84 14-100 204-299 (1189)
114 KOG4666 Predicted phosphate ac 93.9 0.2 4.4E-06 34.4 5.1 71 33-104 258-328 (412)
115 PF05042 Caleosin: Caleosin re 93.8 0.33 7.2E-06 30.3 5.6 32 71-102 95-126 (174)
116 KOG0035 Ca2+-binding actin-bun 93.8 0.2 4.3E-06 38.7 5.4 76 31-106 744-822 (890)
117 PF08726 EFhand_Ca_insen: Ca2+ 93.8 0.039 8.4E-07 29.2 1.3 62 31-98 3-67 (69)
118 KOG1955 Ral-GTPase effector RA 93.2 0.2 4.2E-06 36.4 4.4 57 4-62 237-293 (737)
119 PLN02952 phosphoinositide phos 93.2 0.35 7.6E-06 36.0 5.7 57 47-104 13-69 (599)
120 KOG0042 Glycerol-3-phosphate d 92.9 0.31 6.8E-06 36.0 5.1 67 34-102 593-659 (680)
121 PF05042 Caleosin: Caleosin re 92.7 1.6 3.5E-05 27.4 10.0 65 33-98 95-164 (174)
122 KOG4286 Dystrophin-like protei 92.5 0.55 1.2E-05 35.8 5.9 96 2-102 474-582 (966)
123 KOG3866 DNA-binding protein of 92.1 0.19 4.2E-06 34.3 3.0 68 35-102 245-326 (442)
124 PF09069 EF-hand_3: EF-hand; 91.2 1.6 3.5E-05 24.3 7.5 66 34-102 3-77 (90)
125 PLN02222 phosphoinositide phos 91.0 1.5 3.2E-05 32.8 6.8 68 32-101 23-91 (581)
126 KOG1029 Endocytic adaptor prot 91.0 0.28 6.1E-06 37.5 3.2 58 2-61 199-256 (1118)
127 KOG0039 Ferric reductase, NADH 90.8 0.71 1.5E-05 34.8 5.2 83 12-101 2-90 (646)
128 PLN02228 Phosphoinositide phos 90.5 2.1 4.6E-05 31.9 7.2 70 30-101 20-93 (567)
129 KOG1707 Predicted Ras related/ 89.6 2.3 5E-05 31.7 6.7 34 72-105 315-348 (625)
130 PF12174 RST: RCD1-SRO-TAF4 (R 89.2 2.1 4.7E-05 22.7 6.3 49 12-63 6-54 (70)
131 KOG3866 DNA-binding protein of 88.4 2.5 5.5E-05 29.1 5.9 59 2-60 248-322 (442)
132 PLN02230 phosphoinositide phos 88.1 4.3 9.3E-05 30.5 7.3 71 30-101 25-103 (598)
133 PF02761 Cbl_N2: CBL proto-onc 86.3 4 8.6E-05 22.5 6.3 51 13-63 21-71 (85)
134 KOG4004 Matricellular protein 86.0 0.35 7.6E-06 31.0 0.8 25 74-98 224-248 (259)
135 KOG0998 Synaptic vesicle prote 83.7 0.52 1.1E-05 36.6 1.0 66 33-102 282-347 (847)
136 PF08976 DUF1880: Domain of un 80.3 2.5 5.5E-05 24.7 2.7 33 69-101 4-36 (118)
137 KOG4004 Matricellular protein 79.7 0.93 2E-05 29.2 0.9 57 2-60 191-248 (259)
138 PF00404 Dockerin_1: Dockerin 79.4 2.8 6E-05 16.7 2.0 11 46-56 3-13 (21)
139 KOG0042 Glycerol-3-phosphate d 79.2 2.9 6.3E-05 31.2 3.3 61 3-63 598-658 (680)
140 KOG1265 Phospholipase C [Lipid 77.5 31 0.00068 27.6 8.2 51 52-107 206-256 (1189)
141 PF14513 DAG_kinase_N: Diacylg 76.9 4.3 9.3E-05 24.6 3.1 49 49-101 6-61 (138)
142 KOG1707 Predicted Ras related/ 74.0 5.9 0.00013 29.7 3.7 61 33-97 314-374 (625)
143 PLN02223 phosphoinositide phos 73.6 23 0.00049 26.5 6.6 71 30-101 12-93 (537)
144 PF14513 DAG_kinase_N: Diacylg 72.9 18 0.0004 21.9 5.5 71 12-85 5-82 (138)
145 KOG2871 Uncharacterized conser 72.3 3.3 7.2E-05 29.3 2.1 70 31-102 306-376 (449)
146 PF08414 NADPH_Ox: Respiratory 71.7 16 0.00035 20.8 4.4 62 34-101 30-93 (100)
147 KOG2243 Ca2+ release channel ( 69.7 14 0.0003 31.4 5.0 57 3-60 4062-4118(5019)
148 PF09068 EF-hand_2: EF hand; 67.5 24 0.00051 21.0 5.9 14 12-25 57-70 (127)
149 KOG0035 Ca2+-binding actin-bun 66.7 30 0.00065 27.5 6.2 91 3-96 752-848 (890)
150 KOG1954 Endocytosis/signaling 66.6 11 0.00024 27.1 3.6 56 36-96 446-501 (532)
151 PF11116 DUF2624: Protein of u 66.6 20 0.00043 19.8 6.4 69 13-81 13-82 (85)
152 PF05517 p25-alpha: p25-alpha 63.6 32 0.00069 21.1 6.0 55 9-63 13-70 (154)
153 KOG0998 Synaptic vesicle prote 61.6 2 4.3E-05 33.6 -0.7 58 3-62 288-345 (847)
154 COG4359 Uncharacterized conser 60.9 43 0.00092 21.7 6.2 80 9-101 8-88 (220)
155 PF09373 PMBR: Pseudomurein-bi 59.8 13 0.00028 16.4 2.1 16 12-27 2-17 (33)
156 PF12872 OST-HTH: OST-HTH/LOTU 57.0 26 0.00057 18.0 5.7 49 48-110 21-69 (74)
157 PF09336 Vps4_C: Vps4 C termin 56.3 20 0.00044 18.3 2.8 24 14-37 29-52 (62)
158 PF11829 DUF3349: Protein of u 55.3 37 0.00081 19.2 4.9 66 15-81 20-85 (96)
159 PF07879 PHB_acc_N: PHB/PHA ac 53.8 11 0.00024 19.6 1.5 22 41-62 10-31 (64)
160 cd07313 terB_like_2 tellurium 53.6 38 0.00081 18.8 5.2 80 11-93 12-93 (104)
161 PF01023 S_100: S-100/ICaBP ty 51.5 27 0.00059 16.5 3.7 28 35-62 7-36 (44)
162 PF03979 Sigma70_r1_1: Sigma-7 48.9 32 0.00069 18.6 3.0 44 36-85 9-52 (82)
163 PF10440 WIYLD: Ubiquitin-bind 46.3 31 0.00067 18.0 2.5 27 58-84 16-42 (65)
164 COG5562 Phage envelope protein 46.3 24 0.00052 21.3 2.3 25 41-65 79-103 (137)
165 cd08330 CARD_ASC_NALP1 Caspase 45.8 49 0.0011 17.9 3.8 50 47-103 26-75 (82)
166 PF09068 EF-hand_2: EF hand; 45.5 64 0.0014 19.1 8.0 86 13-98 13-123 (127)
167 PF07308 DUF1456: Protein of u 44.1 49 0.0011 17.4 4.8 28 32-63 15-42 (68)
168 PF10437 Lip_prot_lig_C: Bacte 43.6 49 0.0011 17.8 3.2 43 52-98 43-86 (86)
169 KOG1785 Tyrosine kinase negati 39.8 1.1E+02 0.0023 22.4 5.0 46 12-57 188-233 (563)
170 PF09107 SelB-wing_3: Elongati 39.5 50 0.0011 16.1 3.1 31 47-84 7-37 (50)
171 KOG2419 Phosphatidylserine dec 39.3 41 0.00088 26.1 3.0 59 3-61 442-532 (975)
172 COG2818 Tag 3-methyladenine DN 39.0 31 0.00068 22.0 2.2 48 18-65 39-86 (188)
173 smart00222 Sec7 Sec7 domain. D 38.5 1E+02 0.0022 19.5 4.7 13 88-100 151-163 (187)
174 PF08044 DUF1707: Domain of un 38.4 54 0.0012 16.2 2.7 16 12-27 21-36 (53)
175 KOG0455 Homoserine dehydrogena 38.1 56 0.0012 22.3 3.3 37 34-70 178-214 (364)
176 KOG2301 Voltage-gated Ca2+ cha 37.5 35 0.00076 29.1 2.7 69 32-102 1415-1486(1592)
177 PF04558 tRNA_synt_1c_R1: Glut 37.2 54 0.0012 20.5 3.0 47 32-81 83-129 (164)
178 PF12486 DUF3702: ImpA domain 36.1 59 0.0013 20.0 3.0 30 34-63 69-98 (148)
179 cd00171 Sec7 Sec7 domain; Doma 35.5 1.2E+02 0.0025 19.2 4.7 11 89-99 150-160 (185)
180 PLN02228 Phosphoinositide phos 35.0 1.5E+02 0.0034 22.5 5.4 50 12-61 36-91 (567)
181 PF05872 DUF853: Bacterial pro 34.7 1.2E+02 0.0027 22.5 4.8 50 14-63 105-157 (502)
182 KOG3449 60S acidic ribosomal p 34.4 98 0.0021 18.0 5.1 44 37-82 4-47 (112)
183 PF14237 DUF4339: Domain of un 34.2 36 0.00079 15.9 1.5 19 44-62 7-25 (45)
184 cd08324 CARD_NOD1_CARD4 Caspas 32.6 93 0.002 17.2 3.5 51 47-104 26-76 (85)
185 PF03556 Cullin_binding: Culli 32.5 93 0.002 18.1 3.3 10 89-98 107-116 (117)
186 KOG0506 Glutaminase (contains 31.8 2.3E+02 0.0049 21.4 6.1 63 39-101 91-159 (622)
187 KOG1264 Phospholipase C [Lipid 30.9 2.1E+02 0.0045 23.3 5.6 94 8-101 190-294 (1267)
188 KOG4301 Beta-dystrobrevin [Cyt 30.5 2.1E+02 0.0044 20.5 5.1 62 38-102 114-175 (434)
189 cd02977 ArsC_family Arsenate R 30.3 1E+02 0.0022 17.1 3.3 55 48-105 33-90 (105)
190 PF07492 Trehalase_Ca-bi: Neut 29.9 15 0.00032 16.0 -0.2 17 76-92 3-19 (30)
191 cd08315 Death_TRAILR_DR4_DR5 D 28.9 1.1E+02 0.0025 17.1 4.3 29 33-65 3-31 (96)
192 KOG4403 Cell surface glycoprot 28.8 1.5E+02 0.0032 22.0 4.3 20 6-25 76-95 (575)
193 PF10897 DUF2713: Protein of u 28.7 1.1E+02 0.0024 19.9 3.4 16 36-51 211-226 (246)
194 PF11269 DUF3069: Protein of u 28.6 84 0.0018 18.6 2.6 12 47-58 74-85 (121)
195 PF08100 Dimerisation: Dimeris 27.8 66 0.0014 15.8 1.9 38 40-80 12-49 (51)
196 PLN02230 phosphoinositide phos 27.7 91 0.002 23.9 3.3 32 70-102 27-58 (598)
197 KOG4403 Cell surface glycoprot 27.5 35 0.00075 24.9 1.1 52 10-61 40-95 (575)
198 PRK10026 arsenate reductase; P 27.5 1.1E+02 0.0023 18.6 3.1 56 48-104 36-91 (141)
199 KOG4629 Predicted mechanosensi 27.5 1.9E+02 0.004 22.8 4.9 63 32-103 402-464 (714)
200 PF13829 DUF4191: Domain of un 27.4 1.8E+02 0.0039 19.3 4.3 36 44-81 161-196 (224)
201 KOG2871 Uncharacterized conser 26.6 43 0.00094 24.0 1.4 59 2-60 313-372 (449)
202 cd08332 CARD_CASP2 Caspase act 26.4 1.2E+02 0.0027 16.7 3.9 48 47-101 31-78 (90)
203 COG4103 Uncharacterized protei 26.3 72 0.0016 19.6 2.1 63 38-102 34-96 (148)
204 KOG2557 Uncharacterized conser 26.2 2.3E+02 0.005 20.5 4.8 51 12-62 72-122 (427)
205 PF08355 EF_assoc_1: EF hand a 26.0 1.2E+02 0.0026 16.3 3.3 22 7-28 11-32 (76)
206 KOG0506 Glutaminase (contains 26.0 2.4E+02 0.0052 21.3 5.0 88 2-89 90-198 (622)
207 KOG4070 Putative signal transd 25.3 86 0.0019 19.5 2.4 44 38-81 61-107 (180)
208 PF09851 SHOCT: Short C-termin 24.8 76 0.0016 13.6 1.8 14 48-61 14-27 (31)
209 smart00021 DAX Domain present 24.5 22 0.00047 19.6 -0.2 18 47-64 24-41 (83)
210 KOG3442 Uncharacterized conser 24.5 1.4E+02 0.0031 17.8 3.1 42 11-52 52-96 (132)
211 cd08815 Death_TNFRSF25_DR3 Dea 24.4 1.3E+02 0.0029 16.3 3.0 17 50-66 8-24 (77)
212 COG2256 MGS1 ATPase related to 24.3 2.9E+02 0.0064 20.3 6.3 58 6-66 241-300 (436)
213 PF12419 DUF3670: SNF2 Helicas 24.3 1.7E+02 0.0037 17.5 4.0 51 47-97 80-138 (141)
214 PF04157 EAP30: EAP30/Vps36 fa 23.4 2.2E+02 0.0048 18.5 6.8 38 49-86 112-150 (223)
215 PHA02105 hypothetical protein 22.8 1.2E+02 0.0027 15.4 4.1 53 50-102 4-59 (68)
216 PF02037 SAP: SAP domain; Int 22.8 89 0.0019 13.8 4.1 22 50-71 3-24 (35)
217 cd03032 ArsC_Spx Arsenate Redu 22.7 1.6E+02 0.0035 16.7 3.5 56 48-104 34-89 (115)
218 smart00513 SAP Putative DNA-bi 22.6 89 0.0019 13.6 4.2 22 50-71 3-24 (35)
219 PRK13344 spxA transcriptional 22.4 1.7E+02 0.0036 17.4 3.3 55 48-104 34-89 (132)
220 PF05099 TerB: Tellurite resis 22.4 20 0.00043 21.1 -0.7 10 48-57 37-46 (140)
221 KOG3741 Poly(A) ribonuclease s 22.3 68 0.0015 24.4 1.8 58 39-103 591-650 (655)
222 cd08313 Death_TNFR1 Death doma 22.3 1.5E+02 0.0032 16.1 3.0 17 50-66 8-24 (80)
223 PLN02859 glutamine-tRNA ligase 21.8 4.3E+02 0.0093 21.3 6.2 48 31-81 84-131 (788)
224 cd08323 CARD_APAF1 Caspase act 21.7 1.6E+02 0.0034 16.2 3.9 48 47-101 25-72 (86)
225 PF14771 DUF4476: Domain of un 21.1 1.6E+02 0.0035 16.1 4.9 51 14-65 4-54 (95)
226 cd08326 CARD_CASP9 Caspase act 21.0 1.6E+02 0.0035 16.0 4.1 49 47-102 27-75 (84)
227 PF08002 DUF1697: Protein of u 20.8 1E+02 0.0023 18.4 2.2 62 44-105 12-93 (137)
228 TIGR01639 P_fal_TIGR01639 Plas 20.5 1.4E+02 0.003 15.1 3.2 31 13-43 8-38 (61)
229 PRK12559 transcriptional regul 20.4 2E+02 0.0044 17.0 3.7 56 48-104 34-89 (131)
230 KOG4301 Beta-dystrobrevin [Cyt 20.4 1.5E+02 0.0034 21.1 3.1 60 3-63 115-174 (434)
231 PF05383 La: La domain; Inter 20.3 1.4E+02 0.0031 15.1 2.4 19 39-57 20-38 (61)
232 TIGR01550 DOC_P1 death-on-curi 20.1 2E+02 0.0043 16.8 4.9 52 45-99 68-120 (121)
No 1
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-17 Score=101.62 Aligned_cols=96 Identities=34% Similarity=0.548 Sum_probs=85.3
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhc-----hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLE-----RFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEI 77 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~-----~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~ 77 (114)
++..+|.+++|.|++.+|+.++....... ....+..+|+.+|++++|+|+.+||+.++..+|. +.+.++++.+
T Consensus 49 ~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~--~~~~~e~~~m 126 (151)
T KOG0027|consen 49 LIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE--KLTDEECKEM 126 (151)
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC--cCCHHHHHHH
Confidence 57789999999999999999988663322 3459999999999999999999999999999985 4778999999
Q ss_pred HHHhCCCCCCceeHHHHHHHHhc
Q 048406 78 MSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 78 ~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
++..|.+++|.|+|.+|+..+..
T Consensus 127 i~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 127 IREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHhcCCCCCCeEeHHHHHHHHhc
Confidence 99999999999999999998865
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.76 E-value=1.9e-17 Score=100.50 Aligned_cols=97 Identities=33% Similarity=0.584 Sum_probs=84.8
Q ss_pred chhhcccCCCCceeHHHHHHHHHhh-chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQR-HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
+|..+|. +.+.|+|.+|+.++... ....+.+++..+|+.||++++|+|+..++..+++.+|. ..+.++++.+++.+
T Consensus 61 l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge--~~~deev~~ll~~~ 137 (160)
T COG5126 61 LFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGE--RLSDEEVEKLLKEY 137 (160)
T ss_pred HHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcc--cCCHHHHHHHHHhc
Confidence 4666777 78888888888888765 45677899999999999999999999999999998864 68899999999999
Q ss_pred CCCCCCceeHHHHHHHHhcCc
Q 048406 82 DRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 82 d~~~~g~i~~~ef~~~l~~~~ 102 (114)
|.+++|.|+|++|...+....
T Consensus 138 d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 138 DEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred CCCCCceEeHHHHHHHHhccC
Confidence 999999999999999876543
No 3
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.68 E-value=2.2e-16 Score=98.78 Aligned_cols=101 Identities=28% Similarity=0.405 Sum_probs=87.2
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC----CC---C--CcccHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY----NM---G--DDVTIA 72 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~----g~---~--~~~~~~ 72 (114)
++|..+|.|++|.|+|.||+.++..+.....++.+..+|+++|.+++|+|+.+|+..+++.+ |. + .....+
T Consensus 68 ~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~ 147 (193)
T KOG0044|consen 68 LVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEE 147 (193)
T ss_pred HHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHH
Confidence 47899999999999999999999999888889999999999999999999999998777643 21 1 122367
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 73 MKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 73 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
.+..+|+.+|.|+||.|+++||........
T Consensus 148 ~v~~if~k~D~n~Dg~lT~eef~~~~~~d~ 177 (193)
T KOG0044|consen 148 RVDKIFSKMDKNKDGKLTLEEFIEGCKADP 177 (193)
T ss_pred HHHHHHHHcCCCCCCcccHHHHHHHhhhCH
Confidence 899999999999999999999998887654
No 4
>PTZ00183 centrin; Provisional
Probab=99.67 E-value=1.7e-15 Score=92.34 Aligned_cols=97 Identities=32% Similarity=0.494 Sum_probs=72.4
Q ss_pred chhhcccCCCCceeHHHHHHHHHhh-chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQR-HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
++..+|.+++|.|++.+|..++... ........+..+|+.+|.+++|.|+.+||..++..+|. .++..++..++..+
T Consensus 58 l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~--~l~~~~~~~~~~~~ 135 (158)
T PTZ00183 58 MIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGE--TITDEELQEMIDEA 135 (158)
T ss_pred HHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHHHHh
Confidence 4566777888888888887776543 23344567778888888888888888888888877653 36677778888888
Q ss_pred CCCCCCceeHHHHHHHHhcC
Q 048406 82 DRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 82 d~~~~g~i~~~ef~~~l~~~ 101 (114)
|.+++|.|++++|..++...
T Consensus 136 d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 136 DRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred CCCCCCcCcHHHHHHHHhcc
Confidence 88888888888888877653
No 5
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.66 E-value=1e-15 Score=95.63 Aligned_cols=102 Identities=26% Similarity=0.394 Sum_probs=85.2
Q ss_pred cchhhcccCCCCc-eeHHHHHHHHHhhchhchH-HHHHHHHHhhcCCCCCcccHHHHHHHHHhCCC-CCc----ccHHHH
Q 048406 2 LTKTEADIDGNRT-IVYIEFITATMQRHKLERF-ERLYKAFQHFDKDNTGYITVDELETAFKGYNM-GDD----VTIAMK 74 (114)
Q Consensus 2 ~~~~~~D~~~~g~-i~~~ef~~~~~~~~~~~~~-~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~-~~~----~~~~~~ 74 (114)
.+++.++.+++|. |+|++|...+....+..+. .++..+|+++|.+++|.|+.+|+.+++..+.. +.. .-.+-+
T Consensus 70 rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~ 149 (187)
T KOG0034|consen 70 RIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIV 149 (187)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHH
Confidence 4678889988888 9999999999988555544 59999999999999999999999999987732 211 223558
Q ss_pred HHHHHHhCCCCCCceeHHHHHHHHhcCcc
Q 048406 75 KEIMSEVDRDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 75 ~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 103 (114)
+.++..+|.++||.|+++||...+.+.+.
T Consensus 150 d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 150 DKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 88999999999999999999999987643
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.65 E-value=3e-15 Score=90.31 Aligned_cols=95 Identities=35% Similarity=0.567 Sum_probs=52.8
Q ss_pred chhhcccCCCCceeHHHHHHHHHhh-chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQR-HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
++..+|.+++|.|++++|+.++... ........+..+|+.+|.+++|.|+.+++..++..+|. ..+.++++.++..+
T Consensus 52 ~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~ 129 (149)
T PTZ00184 52 MINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGE--KLTDEEVDEMIREA 129 (149)
T ss_pred HHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCC--CCCHHHHHHHHHhc
Confidence 3445555555666666655555432 22233345555666666666666666666666655542 24455556666666
Q ss_pred CCCCCCceeHHHHHHHHh
Q 048406 82 DRDKDGRISYDEFRAMMK 99 (114)
Q Consensus 82 d~~~~g~i~~~ef~~~l~ 99 (114)
|.+++|.|++.||..++.
T Consensus 130 d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 130 DVDGDGQINYEEFVKMMM 147 (149)
T ss_pred CCCCCCcCcHHHHHHHHh
Confidence 666666666666665553
No 7
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.61 E-value=9.9e-15 Score=88.90 Aligned_cols=103 Identities=21% Similarity=0.175 Sum_probs=91.7
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcc---cHHHHHHHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDV---TIAMKKEIMS 79 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~---~~~~~~~~~~ 79 (114)
.|..+|++++|.|+..++..++..+...++...+..+++.+|.+++|.|++++|..++...+..... +.+++..+|+
T Consensus 13 ~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~ 92 (151)
T KOG0027|consen 13 AFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFR 92 (151)
T ss_pred HHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHH
Confidence 5889999999999999999999999888999999999999999999999999999999877543221 3568999999
Q ss_pred HhCCCCCCceeHHHHHHHHhcCcccc
Q 048406 80 EVDRDKDGRISYDEFRAMMKSGTHLQ 105 (114)
Q Consensus 80 ~~d~~~~g~i~~~ef~~~l~~~~~~~ 105 (114)
.+|.+++|+|+..|+...+.......
T Consensus 93 ~fD~d~~G~Is~~el~~~l~~lg~~~ 118 (151)
T KOG0027|consen 93 VFDKDGDGFISASELKKVLTSLGEKL 118 (151)
T ss_pred HHccCCCCcCcHHHHHHHHHHhCCcC
Confidence 99999999999999999998766543
No 8
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.6e-14 Score=85.25 Aligned_cols=97 Identities=29% Similarity=0.431 Sum_probs=86.4
Q ss_pred chhhcccCCCCceeHHHHHHHHH-hhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATM-QRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~-~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
++.-+|+++.|.|+|++|+..+. ++....+.+.+..+|+.+|-+++|.||..+|+.+.+.+|- .+++++++.++..+
T Consensus 74 ll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLge--nltD~El~eMIeEA 151 (172)
T KOG0028|consen 74 LLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGE--NLTDEELMEMIEEA 151 (172)
T ss_pred HHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCc--cccHHHHHHHHHHh
Confidence 45567888999999999999976 4455568999999999999999999999999999999974 58999999999999
Q ss_pred CCCCCCceeHHHHHHHHhcC
Q 048406 82 DRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 82 d~~~~g~i~~~ef~~~l~~~ 101 (114)
|.+++|-|.-+||...+.+.
T Consensus 152 d~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 152 DRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cccccccccHHHHHHHHhcC
Confidence 99999999999999998764
No 9
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.56 E-value=7.8e-14 Score=84.83 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=90.8
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVD 82 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d 82 (114)
.|..+|++++|.|+..++..+++.+...++...+.+++..+|. +.+.|++.+|..+|...-. .....+++.+.|+.+|
T Consensus 25 aF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~-~~~~~Eel~~aF~~fD 102 (160)
T COG5126 25 AFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK-RGDKEEELREAFKLFD 102 (160)
T ss_pred HHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc-cCCcHHHHHHHHHHhC
Confidence 4789999999999999999999988999999999999999999 9999999999999975521 3455889999999999
Q ss_pred CCCCCceeHHHHHHHHhcCcccccc
Q 048406 83 RDKDGRISYDEFRAMMKSGTHLQAN 107 (114)
Q Consensus 83 ~~~~g~i~~~ef~~~l~~~~~~~~~ 107 (114)
.|++|+|+..++...+.........
T Consensus 103 ~d~dG~Is~~eL~~vl~~lge~~~d 127 (160)
T COG5126 103 KDHDGYISIGELRRVLKSLGERLSD 127 (160)
T ss_pred CCCCceecHHHHHHHHHhhcccCCH
Confidence 9999999999999999866554443
No 10
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.55 E-value=6.8e-14 Score=87.91 Aligned_cols=93 Identities=24% Similarity=0.317 Sum_probs=83.3
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
+++..+|.+.+|.|.+.||..++..+.. |+.+|+.+|.|++|.|+..||+.+|..+|.. ++.+..+.+++++
T Consensus 98 lmI~mfd~~~~G~i~f~EF~~Lw~~i~~------Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~--Lspq~~~~lv~ky 169 (221)
T KOG0037|consen 98 LMISMFDRDNSGTIGFKEFKALWKYINQ------WRNVFRTYDRDRSGTIDSSELRQALTQLGYR--LSPQFYNLLVRKY 169 (221)
T ss_pred HHHHHhcCCCCCccCHHHHHHHHHHHHH------HHHHHHhcccCCCCcccHHHHHHHHHHcCcC--CCHHHHHHHHHHh
Confidence 4678899999999999999999866644 9999999999999999999999999999984 7788889999999
Q ss_pred CCCCCCceeHHHHHHHHhcCc
Q 048406 82 DRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 82 d~~~~g~i~~~ef~~~l~~~~ 102 (114)
|....|.|.|++|..++....
T Consensus 170 d~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 170 DRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred ccccCCceeHHHHHHHHHHHH
Confidence 988799999999999887654
No 11
>PTZ00183 centrin; Provisional
Probab=99.54 E-value=1.1e-13 Score=84.42 Aligned_cols=99 Identities=22% Similarity=0.196 Sum_probs=84.5
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVD 82 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d 82 (114)
.|..+|++++|.|+..+|..++..+........+..+|+.+|.+++|.|++.+|..++...- ......+.++.+|+.+|
T Consensus 22 ~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~-~~~~~~~~l~~~F~~~D 100 (158)
T PTZ00183 22 AFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL-GERDPREEILKAFRLFD 100 (158)
T ss_pred HHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh-cCCCcHHHHHHHHHHhC
Confidence 57889999999999999999998776556678899999999999999999999998876531 12344677899999999
Q ss_pred CCCCCceeHHHHHHHHhcCc
Q 048406 83 RDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 83 ~~~~g~i~~~ef~~~l~~~~ 102 (114)
.+++|.|+..+|..++....
T Consensus 101 ~~~~G~i~~~e~~~~l~~~~ 120 (158)
T PTZ00183 101 DDKTGKISLKNLKRVAKELG 120 (158)
T ss_pred CCCCCcCcHHHHHHHHHHhC
Confidence 99999999999999987643
No 12
>PTZ00184 calmodulin; Provisional
Probab=99.53 E-value=2.4e-13 Score=81.97 Aligned_cols=98 Identities=27% Similarity=0.210 Sum_probs=83.7
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVD 82 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d 82 (114)
.|..+|++++|.|++.+|..++..+...+....+..+|+.+|.+++|.|++++|..++..... .......+..+|+.+|
T Consensus 16 ~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~-~~~~~~~~~~~F~~~D 94 (149)
T PTZ00184 16 AFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK-DTDSEEEIKEAFKVFD 94 (149)
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc-CCcHHHHHHHHHHhhC
Confidence 578899999999999999999987765666788999999999999999999999998865411 1234567789999999
Q ss_pred CCCCCceeHHHHHHHHhcC
Q 048406 83 RDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 83 ~~~~g~i~~~ef~~~l~~~ 101 (114)
.+++|.|+.++|..++...
T Consensus 95 ~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 95 RDGNGFISAAELRHVMTNL 113 (149)
T ss_pred CCCCCeEeHHHHHHHHHHH
Confidence 9999999999999988764
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.52 E-value=6.2e-14 Score=74.05 Aligned_cols=63 Identities=44% Similarity=0.695 Sum_probs=54.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhCCCCC--cccHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 048406 36 LYKAFQHFDKDNTGYITVDELETAFKGYNMGD--DVTIAMKKEIMSEVDRDKDGRISYDEFRAMM 98 (114)
Q Consensus 36 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~--~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 98 (114)
+..+|+.+|.+++|.|+.+||..++..++... ....+.++.+++.+|++++|.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999999999999999987431 2335677888999999999999999999875
No 14
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.45 E-value=7.9e-13 Score=89.84 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=84.7
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVD 82 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d 82 (114)
+|...|+|.+|.++|+||..++ ...+..+..+|+..|.+.+|.|..+|+.+.++.+|. ++++++++++++..|
T Consensus 56 l~~~~d~~~dg~vDy~eF~~Y~-----~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi--~l~de~~~k~~e~~d 128 (463)
T KOG0036|consen 56 LFSAMDANRDGRVDYSEFKRYL-----DNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGI--QLSDEKAAKFFEHMD 128 (463)
T ss_pred HHHhcccCcCCcccHHHHHHHH-----HHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCC--ccCHHHHHHHHHHhc
Confidence 5788999999999999999987 456778999999999999999999999999999986 488999999999999
Q ss_pred CCCCCceeHHHHHHHHhcCc
Q 048406 83 RDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 83 ~~~~g~i~~~ef~~~l~~~~ 102 (114)
+++++.|+++||..++.-.+
T Consensus 129 ~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 129 KDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred cCCCeeeccHHHHhhhhcCC
Confidence 99999999999998886654
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.44 E-value=6.3e-13 Score=74.00 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhhcC-CCCCcccHHHHHHHHHh-CCCCCcccH-HHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 32 RFERLYKAFQHFDK-DNTGYITVDELETAFKG-YNMGDDVTI-AMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 32 ~~~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~-~g~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
....+..+|+.||+ +++|.|+..||+.++.. +|. .++. ++++.+++.+|.|++|.|+|+||..++...
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~--~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPH--LLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhh--hccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34568889999999 99999999999999998 753 3555 889999999999999999999999888664
No 16
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.41 E-value=5.8e-12 Score=75.40 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=83.7
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhc---------------------------------hhchHHHHHHHHHhhcCCCCC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRH---------------------------------KLERFERLYKAFQHFDKDNTG 49 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~---------------------------------~~~~~~~~~~~f~~~d~~~~g 49 (114)
-|..+|+|+||.|+.+++..++..+. ...++..+..+|+.||.+++|
T Consensus 37 AF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G 116 (171)
T KOG0031|consen 37 AFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSG 116 (171)
T ss_pred HHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCC
Confidence 37788999999999999887766553 223578899999999999999
Q ss_pred cccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q 048406 50 YITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 50 ~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
.|..+.++++|...| ...+.++|+.+|+.+-.+..|.++|..|...+..
T Consensus 117 ~I~~d~lre~Ltt~g--Dr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 117 KIDEDYLRELLTTMG--DRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred ccCHHHHHHHHHHhc--ccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 999999999998876 5689999999999999999999999999999873
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.35 E-value=1e-11 Score=69.11 Aligned_cols=67 Identities=18% Similarity=0.344 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-----CCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 33 FERLYKAFQHFD-KDNTG-YITVDELETAFKG-----YNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 33 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
...+..+|+.+| ++++| .|+.+||+.+|+. +|. ..+.++++.+++.+|.|++|.|+|.+|+.++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~--~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE--IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC--CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456889999998 79999 5999999999998 664 3677889999999999999999999999887654
No 18
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.33 E-value=9.7e-12 Score=74.00 Aligned_cols=100 Identities=21% Similarity=0.339 Sum_probs=83.2
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhch-hchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHH----HHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHK-LERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAM----KKEI 77 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~----~~~~ 77 (114)
+.+.+-.||.|.+++++|+.++..++. .+.+-++.-+|+++|-++++.|...++...+..+-. ..++.++ ++++
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr-~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR-DELSDEEVELICEKV 154 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh-ccCCHHHHHHHHHHH
Confidence 456778899999999999999988754 455677888999999999999999999999988732 3455444 6778
Q ss_pred HHHhCCCCCCceeHHHHHHHHhcCcc
Q 048406 78 MSEVDRDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 78 ~~~~d~~~~g~i~~~ef~~~l~~~~~ 103 (114)
+..+|.+++|++++.+|.+.+.+.+.
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~raPD 180 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRAPD 180 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhCcc
Confidence 88999999999999999999877654
No 19
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.32 E-value=1.1e-11 Score=65.27 Aligned_cols=59 Identities=27% Similarity=0.272 Sum_probs=51.6
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhc----hhchHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRH----KLERFERLYKAFQHFDKDNTGYITVDELETAF 60 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~----~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 60 (114)
.+|+.+|++++|.|+.+|+..++..+. .......+..+|+.+|++++|.|+++||..++
T Consensus 4 ~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 4 EAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 368999999999999999999999885 34456677888999999999999999998764
No 20
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=1.3e-11 Score=77.48 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=80.8
Q ss_pred CCCceeHHHHHHHHHhh-chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCce
Q 048406 11 GNRTIVYIEFITATMQR-HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRI 89 (114)
Q Consensus 11 ~~g~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i 89 (114)
.+|.++-++|..++... ....+......+|+.+|.+++|.|++.||..++....- ....+.+...|+.+|.|++|+|
T Consensus 40 P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r--Gt~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 40 PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR--GTLEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC--CcHHHHhhhhheeecCCCCceE
Confidence 48999999999999987 45678899999999999999999999999888877632 2445667889999999999999
Q ss_pred eHHHHHHHHhcCccccc
Q 048406 90 SYDEFRAMMKSGTHLQA 106 (114)
Q Consensus 90 ~~~ef~~~l~~~~~~~~ 106 (114)
+++|++..+...+...+
T Consensus 118 t~~Eml~iv~~i~~m~~ 134 (193)
T KOG0044|consen 118 TKEEMLKIVQAIYQMTG 134 (193)
T ss_pred cHHHHHHHHHHHHHHcc
Confidence 99999999888766654
No 21
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=3.7e-11 Score=72.38 Aligned_cols=99 Identities=21% Similarity=0.171 Sum_probs=88.6
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHH-hCCCCCcccHHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFK-GYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~-~~g~~~~~~~~~~~~~~~~~ 81 (114)
.|..+|++++|.|+++|+.-++..+.-.+....+..+..-+|+++.|.|++++|..++. ++|.. .+.+++...|+.+
T Consensus 38 ~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~--dt~eEi~~afrl~ 115 (172)
T KOG0028|consen 38 AFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER--DTKEEIKKAFRLF 115 (172)
T ss_pred HHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc--CcHHHHHHHHHcc
Confidence 47789999999999999988888888888889999999999999999999999999976 45543 4889999999999
Q ss_pred CCCCCCceeHHHHHHHHhcCcc
Q 048406 82 DRDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 82 d~~~~g~i~~~ef~~~l~~~~~ 103 (114)
|.+.+|.|++.+|........+
T Consensus 116 D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 116 DDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred cccCCCCcCHHHHHHHHHHhCc
Confidence 9999999999999999887766
No 22
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=3.5e-11 Score=68.04 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=59.9
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
.....+..+|+.+|++++|.|+.++++.+++..| .+.++++.++..+|.+++|.|++++|+.++....
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 4556789999999999999999999999999875 4567889999999999999999999998876644
No 23
>PLN02964 phosphatidylserine decarboxylase
Probab=99.29 E-value=3.6e-11 Score=87.00 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=77.4
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhc-hhchHHH---HHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRH-KLERFER---LYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIM 78 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~-~~~~~~~---~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~ 78 (114)
.|..+|+|++|.+ +..++..+. ..+++.. +..+|+.+|.+++|.|+++||..++..++. ..+.+++..+|
T Consensus 148 aF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~--~~seEEL~eaF 221 (644)
T PLN02964 148 SFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN--LVAANKKEELF 221 (644)
T ss_pred HHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc--CCCHHHHHHHH
Confidence 4889999999987 444555444 2344444 899999999999999999999999998763 45678899999
Q ss_pred HHhCCCCCCceeHHHHHHHHhcC
Q 048406 79 SEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 79 ~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
+.+|.|++|+|+++|+...+...
T Consensus 222 k~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 222 KAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHhCCCCCCcCCHHHHHHHHHhc
Confidence 99999999999999999998774
No 24
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.28 E-value=2.7e-11 Score=63.80 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=53.2
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 37 YKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 37 ~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
+.+|+.+|++++|.|+.+|+..++..+|. +.++++.+++.+|.+++|.|++.+|..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~----~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL----PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC----CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 56899999999999999999999988763 56778999999999999999999999887643
No 25
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.27 E-value=4.4e-11 Score=66.57 Aligned_cols=67 Identities=16% Similarity=0.362 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhcC-CC-CCcccHHHHHHHHHh---CCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 33 FERLYKAFQHFDK-DN-TGYITVDELETAFKG---YNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 33 ~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
...+..+|..++. ++ +|.|+.+||+.++.. +| ...+.++++.+++.+|.+++|+|+|.||+.++...
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg--~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG--SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3557788999997 66 899999999999974 44 45788999999999999999999999999888654
No 26
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.26 E-value=4.5e-11 Score=67.09 Aligned_cols=69 Identities=20% Similarity=0.383 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHh-CCC--CCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 33 FERLYKAFQHFD-KDNTG-YITVDELETAFKG-YNM--GDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 33 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~g~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
...+..+|+.+| ++++| .|+..|++.+++. +|. +...+.++++.++..+|.+++|.|+|.+|..++...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 466899999997 99999 5999999999975 542 123567889999999999999999999999888654
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.26 E-value=4.2e-11 Score=67.34 Aligned_cols=69 Identities=17% Similarity=0.407 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHhC-CC--CCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 33 FERLYKAFQHFD-KDNTG-YITVDELETAFKGY-NM--GDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 33 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~~-g~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
...+..+|+.+| ++++| .|+..||+.+++.. +. ....+..+++.++..+|.|++|.|+|+||+.++...
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456777899999 78998 59999999999763 21 123467789999999999999999999999988653
No 28
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.24 E-value=6.3e-11 Score=66.75 Aligned_cols=70 Identities=19% Similarity=0.449 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhhcC-CC-CCcccHHHHHHHHHh-CC--CCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 32 RFERLYKAFQHFDK-DN-TGYITVDELETAFKG-YN--MGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 32 ~~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~-~g--~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
....+..+|..+|. ++ +|.|+..|++.+++. +| .+...+.++++.++..+|.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35668899999997 87 699999999999975 32 1124677889999999999999999999999888653
No 29
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.21 E-value=1.4e-10 Score=64.46 Aligned_cols=70 Identities=17% Similarity=0.363 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhhcC--CCCCcccHHHHHHHHHh-CCCC--CcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 32 RFERLYKAFQHFDK--DNTGYITVDELETAFKG-YNMG--DDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 32 ~~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~-~g~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
....+..+|..+|+ +++|.|+.+++..+++. +|.+ ...+.++++.++..+|.+++|.|+|++|+.++...
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 45678899999999 89999999999999975 4432 22457889999999999999999999999988764
No 30
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.20 E-value=1.1e-10 Score=59.14 Aligned_cols=53 Identities=34% Similarity=0.546 Sum_probs=44.1
Q ss_pred CCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q 048406 47 NTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 47 ~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
++|.|+.++|+.++..+|... .+.+++..+|..+|.+++|.|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~-~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKD-LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSS-SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCC-CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 468999999999998777521 77788999999999999999999999988753
No 31
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.17 E-value=3.3e-10 Score=71.52 Aligned_cols=92 Identities=23% Similarity=0.264 Sum_probs=80.3
Q ss_pred chhhcccCCCCceeHHHHHHHHHh-hchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQ-RHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~-~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
.|+.+|++.+|.|+-+|...++.- ....=+...++.+..+||.+.+|.|.++||+.+++.+ ...+.+|+.+
T Consensus 62 ~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i--------~~Wr~vF~~~ 133 (221)
T KOG0037|consen 62 WFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI--------NQWRNVFRTY 133 (221)
T ss_pred HHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH--------HHHHHHHHhc
Confidence 578899999999999999998873 3444567889999999999999999999999999766 4568899999
Q ss_pred CCCCCCceeHHHHHHHHhcCc
Q 048406 82 DRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 82 d~~~~g~i~~~ef~~~l~~~~ 102 (114)
|.|++|.|+..|+...|....
T Consensus 134 D~D~SG~I~~sEL~~Al~~~G 154 (221)
T KOG0037|consen 134 DRDRSGTIDSSELRQALTQLG 154 (221)
T ss_pred ccCCCCcccHHHHHHHHHHcC
Confidence 999999999999999887643
No 32
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.17 E-value=3.2e-10 Score=66.06 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=55.2
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
.....+..+|..+|.|++|.|+.+|+..+. ++ ....++..++..+|.|++|.|+++||..++.+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~----~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD----PNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc----chHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 456778999999999999999999999876 31 34667789999999999999999999999933
No 33
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.15 E-value=5.8e-10 Score=57.14 Aligned_cols=61 Identities=41% Similarity=0.702 Sum_probs=52.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 048406 36 LYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMM 98 (114)
Q Consensus 36 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 98 (114)
+..+|..+|.+++|.|+.+++..+++.++. ..+.+.+..++..++.+++|.|++.+|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE--GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC--CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 567889999999999999999999988864 4667778889999999999999999998765
No 34
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.13 E-value=5.9e-10 Score=65.84 Aligned_cols=84 Identities=21% Similarity=0.376 Sum_probs=66.0
Q ss_pred CceeHHHHHHHHHhhc---hhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCce
Q 048406 13 RTIVYIEFITATMQRH---KLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRI 89 (114)
Q Consensus 13 g~i~~~ef~~~~~~~~---~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i 89 (114)
..|+|++|+.+++.+. .+.+.+.+....+.||+.++|.|+..|++.+|..+|. .++.++++.++.-. .|.+|.|
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGe--kl~eeEVe~Llag~-eD~nG~i 140 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGE--KLTEEEVEELLAGQ-EDSNGCI 140 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHh--hccHHHHHHHHccc-cccCCcC
Confidence 4556666665555442 2344577788899999999999999999999999974 68999998888766 4778999
Q ss_pred eHHHHHHHHh
Q 048406 90 SYDEFRAMMK 99 (114)
Q Consensus 90 ~~~ef~~~l~ 99 (114)
.|+.|+..+.
T Consensus 141 ~YE~fVk~i~ 150 (152)
T KOG0030|consen 141 NYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHh
Confidence 9999998764
No 35
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.10 E-value=3.1e-10 Score=63.23 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=54.8
Q ss_pred cchhhccc-CCCCceeHHHHHHHHHh-hchhchH-HHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 2 LTKTEADI-DGNRTIVYIEFITATMQ-RHKLERF-ERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 2 ~~~~~~D~-~~~g~i~~~ef~~~~~~-~~~~~~~-~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
..|+.+|+ +++|.|+..|++.++.. ++...+. ..+..+++.+|.|++|.|+++||..++..+
T Consensus 12 ~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 12 SNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 36899999 99999999999999988 6544445 789999999999999999999999998765
No 36
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.10 E-value=1.1e-09 Score=75.63 Aligned_cols=67 Identities=31% Similarity=0.479 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhCC--CCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q 048406 34 ERLYKAFQHFDKDNTGYITVDELETAFKGYN--MGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 34 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g--~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
..+..+|+..|.+++|.|+.+||..++..++ ++.+.+.+++..+-+..|.|+||.|++.||+..+.-
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 4567789999999999999999999987653 445678899999999999999999999999988754
No 37
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.10 E-value=4.7e-10 Score=66.26 Aligned_cols=105 Identities=13% Similarity=0.073 Sum_probs=90.2
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCC--CCCcccHHHHHHHHHhCCCC-CcccHHHHHHHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKD--NTGYITVDELETAFKGYNMG-DDVTIAMKKEIMS 79 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~--~~g~i~~~e~~~~l~~~g~~-~~~~~~~~~~~~~ 79 (114)
+|..+|+.+||+|++.+....++-+...|+.+.+......++++ +-..|++++|..++..++.+ ...+.++.-+-++
T Consensus 16 ~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLr 95 (152)
T KOG0030|consen 16 AFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLR 95 (152)
T ss_pred HHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 68899999999999999999999999999999999999988877 55799999999999887644 3355677788999
Q ss_pred HhCCCCCCceeHHHHHHHHhcCcccccc
Q 048406 80 EVDRDKDGRISYDEFRAMMKSGTHLQAN 107 (114)
Q Consensus 80 ~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 107 (114)
.+|++++|.|...|+.+.|.........
T Consensus 96 vFDkeg~G~i~~aeLRhvLttlGekl~e 123 (152)
T KOG0030|consen 96 VFDKEGNGTIMGAELRHVLTTLGEKLTE 123 (152)
T ss_pred hhcccCCcceeHHHHHHHHHHHHhhccH
Confidence 9999999999999999999876655443
No 38
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.08 E-value=1.3e-09 Score=60.78 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=56.4
Q ss_pred hHHHHHHHHHh-hcCCCCC-cccHHHHHHHHHhCCC---CCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 32 RFERLYKAFQH-FDKDNTG-YITVDELETAFKGYNM---GDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 32 ~~~~~~~~f~~-~d~~~~g-~i~~~e~~~~l~~~g~---~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
....+..+|+. +|++++| .|+.+||+.++....- .......+++.+++.+|.|++|.|+|+||+.++...
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34567888998 7787876 9999999999987521 123456789999999999999999999999888654
No 39
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=7.8e-10 Score=73.41 Aligned_cols=102 Identities=26% Similarity=0.269 Sum_probs=76.2
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchh--chH---HHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKL--ERF---ERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEI 77 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~--~~~---~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~ 77 (114)
.+.-.|+|++|.|+++||+.-+-..... .++ .+-...+...|+|++|+++-+|+++++.--++ .....+++.+
T Consensus 205 tl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~--d~A~~EA~hL 282 (325)
T KOG4223|consen 205 TLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQ--DHAKAEARHL 282 (325)
T ss_pred HHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCc--cHHHHHHHHH
Confidence 3566899999999999998776554221 111 33446788889999999999999988744432 3557888999
Q ss_pred HHHhCCCCCCceeHHHHHHHHhcCccccc
Q 048406 78 MSEVDRDKDGRISYDEFRAMMKSGTHLQA 106 (114)
Q Consensus 78 ~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 106 (114)
+...|.|++|+++++|.+.-.--....++
T Consensus 283 ~~eaD~dkD~kLs~eEIl~~~d~FvgSqA 311 (325)
T KOG4223|consen 283 LHEADEDKDGKLSKEEILEHYDVFVGSQA 311 (325)
T ss_pred hhhhccCccccccHHHHhhCcceeeeeec
Confidence 99999999999999999876655554443
No 40
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.01 E-value=1.6e-09 Score=55.47 Aligned_cols=59 Identities=24% Similarity=0.166 Sum_probs=53.9
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAF 60 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 60 (114)
.+|..+|++++|.|++++|..++.......+...+..+|+.+|.+++|.|++++|..++
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 46889999999999999999999988777888899999999999999999999998765
No 41
>PF14658 EF-hand_9: EF-hand domain
Probab=99.01 E-value=2.5e-09 Score=55.76 Aligned_cols=63 Identities=25% Similarity=0.476 Sum_probs=52.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCC-CceeHHHHHHHHhcC
Q 048406 38 KAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKD-GRISYDEFRAMMKSG 101 (114)
Q Consensus 38 ~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~~~ 101 (114)
.+|..||.++.|.|...++...|+.++. ...++.+++.+...+|+++. |.|+++.|+..|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~-~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTG-RSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcC-CCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3688999999999999999999998875 24567788999999999887 899999999888754
No 42
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.00 E-value=2.7e-09 Score=53.95 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=46.1
Q ss_pred CCCceeHHHHHHHHHhhchh-chHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 048406 11 GNRTIVYIEFITATMQRHKL-ERFERLYKAFQHFDKDNTGYITVDELETAFK 61 (114)
Q Consensus 11 ~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 61 (114)
.+|.|+.++|..++..+... .+...+..+|..+|.+++|.|+++||..++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999776666 7888899999999999999999999999875
No 43
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.00 E-value=2e-09 Score=59.89 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=54.2
Q ss_pred chhhcc-cCCCC-ceeHHHHHHHHHh-----hchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEAD-IDGNR-TIVYIEFITATMQ-----RHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D-~~~~g-~i~~~ef~~~~~~-----~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
.|+.+| ++++| .|+.+++..++.. +....+...+..+++.+|++++|.|++++|..++..+
T Consensus 13 aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 13 VFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 688998 79999 6999999999987 5666678889999999999999999999999888654
No 44
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.99 E-value=1.4e-09 Score=63.33 Aligned_cols=56 Identities=18% Similarity=0.116 Sum_probs=49.2
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFK 61 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 61 (114)
|.|..+|.|++|.|+.+|+..+. ..+....+..+|..+|.|++|.||++||...+.
T Consensus 52 w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 52 WMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 68999999999999999999875 234566778899999999999999999999983
No 45
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.98 E-value=4.2e-09 Score=65.92 Aligned_cols=71 Identities=25% Similarity=0.475 Sum_probs=63.2
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCcc
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 103 (114)
.....+..+|+.+|.+.||+|++.|++.+|.++|.+ .+.--++.+++..|.|.+|+|+|-+|+-.+.....
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap--QTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP--QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCc--hhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 346788999999999999999999999999999864 66667789999999999999999999998877654
No 46
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.6e-09 Score=71.99 Aligned_cols=108 Identities=18% Similarity=0.278 Sum_probs=79.3
Q ss_pred chhhcccCCCCceeHHHHHHHHHhh-chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC-CCCCcc--cHHHHHHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQR-HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY-NMGDDV--TIAMKKEIM 78 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-g~~~~~--~~~~~~~~~ 78 (114)
-|+.+|.|++|.++.+||..++.-. ++.-..-.+.....-.|+|++|+|+++||..-+... +..... ...+-+.++
T Consensus 168 rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~ 247 (325)
T KOG4223|consen 168 RFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFF 247 (325)
T ss_pred HHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHH
Confidence 4789999999999999999997543 333334556666778899999999999987666443 311111 133457899
Q ss_pred HHhCCCCCCceeHHHHHHHHhcCccccccccc
Q 048406 79 SEVDRDKDGRISYDEFRAMMKSGTHLQANNNN 110 (114)
Q Consensus 79 ~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 110 (114)
..+|.|++|+++-+|...++.-.....+..+.
T Consensus 248 ~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA 279 (325)
T KOG4223|consen 248 EFRDKNKDGKLDGDELLDWILPSEQDHAKAEA 279 (325)
T ss_pred HHhhcCCCCccCHHHHhcccCCCCccHHHHHH
Confidence 99999999999999999888665554444443
No 47
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.96 E-value=3.4e-09 Score=55.67 Aligned_cols=59 Identities=19% Similarity=0.076 Sum_probs=52.2
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
+|..+|++++|.|+.+|+..++..... +...+..+|+.+|.+++|.|+++||..++..+
T Consensus 4 ~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 4 IFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 688999999999999999999877643 66778999999999999999999999888654
No 48
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.92 E-value=5.4e-09 Score=58.78 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=52.1
Q ss_pred chhhcc-cCCCC-ceeHHHHHHHHHhh-----chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEAD-IDGNR-TIVYIEFITATMQR-----HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D-~~~~g-~i~~~ef~~~~~~~-----~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
+|+.+| +|++| .|+..|++.++... ........+..+++.+|.+++|.|+++||..++..+
T Consensus 15 ~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 15 IFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 588899 78998 59999999999652 233466789999999999999999999999998765
No 49
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.90 E-value=2e-08 Score=63.05 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=77.0
Q ss_pred chhhcccC-CCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCc-ccHHHHHHHHHhCCCCCcccHHHHHHHHHH
Q 048406 3 TKTEADID-GNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGY-ITVDELETAFKGYNMGDDVTIAMKKEIMSE 80 (114)
Q Consensus 3 ~~~~~D~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~-i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~ 80 (114)
.|..+|++ ++|.++.+||..+..... ..-..+++..++.+++|. |++++|.+++.... +.....+.++..|+.
T Consensus 38 rF~kl~~~~~~g~lt~eef~~i~~~~~----Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~-~~~~~~~Kl~faF~v 112 (187)
T KOG0034|consen 38 RFKKLDRNNGDGYLTKEEFLSIPELAL----NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFS-PKASKREKLRFAFRV 112 (187)
T ss_pred HHHHhccccccCccCHHHHHHHHHHhc----CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 46788888 999999999999983332 233667888899888888 99999999998774 223334588999999
Q ss_pred hCCCCCCceeHHHHHHHHhcCcc
Q 048406 81 VDRDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 81 ~d~~~~g~i~~~ef~~~l~~~~~ 103 (114)
||.+++|+|+.+|+...+.....
T Consensus 113 YD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 113 YDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred hcCCCCCcCcHHHHHHHHHHHHc
Confidence 99999999999999888776544
No 50
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.88 E-value=7.2e-09 Score=58.34 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=52.9
Q ss_pred chhhccc-CC-CCceeHHHHHHHHHh-----hchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCC
Q 048406 3 TKTEADI-DG-NRTIVYIEFITATMQ-----RHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYN 64 (114)
Q Consensus 3 ~~~~~D~-~~-~g~i~~~ef~~~~~~-----~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g 64 (114)
.|..+|. ++ +|.|+..|+..++.. +....+...+..+++.+|.+++|.|++++|..++..++
T Consensus 13 ~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 13 TFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 5889997 97 699999999999875 23345678899999999999999999999999987664
No 51
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.87 E-value=1.4e-08 Score=56.49 Aligned_cols=67 Identities=15% Similarity=0.361 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhcCC--CCCcccHHHHHHHHHh-CCCCCccc----HHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 33 FERLYKAFQHFDKD--NTGYITVDELETAFKG-YNMGDDVT----IAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 33 ~~~~~~~f~~~d~~--~~g~i~~~e~~~~l~~-~g~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
...+...|+.++.. ++|.|+.+||+.++.. +| ...+ .++++.++..+|.+++|.|+|++|+.++...
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g--~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELP--NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhh--HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45577788988866 4789999999999974 43 2244 7889999999999999999999999988754
No 52
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.86 E-value=1.2e-08 Score=57.23 Aligned_cols=61 Identities=10% Similarity=0.157 Sum_probs=52.3
Q ss_pred chhhcc-cCCCC-ceeHHHHHHHHHh-hc----hhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEAD-IDGNR-TIVYIEFITATMQ-RH----KLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D-~~~~g-~i~~~ef~~~~~~-~~----~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
.|+.+| ++++| .|+..|+..++.. +. ..++...+..+++.+|++++|.|++++|..++..+
T Consensus 14 ~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 14 VFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 688996 99999 5999999999975 32 23567889999999999999999999999988655
No 53
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.83 E-value=1.4e-08 Score=69.64 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=80.3
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhch-hchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHK-LERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
+|+.+|.+++|.|+..+....+..+.. .+.......+|+..|.+.+|.++++||+.-+.. ...++-.+|...
T Consensus 19 lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-------~E~~l~~~F~~i 91 (463)
T KOG0036|consen 19 LFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-------KELELYRIFQSI 91 (463)
T ss_pred HHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-------hHHHHHHHHhhh
Confidence 688999999999999999988887743 477888999999999999999999999987733 234557899999
Q ss_pred CCCCCCceeHHHHHHHHhcCcccc
Q 048406 82 DRDKDGRISYDEFRAMMKSGTHLQ 105 (114)
Q Consensus 82 d~~~~g~i~~~ef~~~l~~~~~~~ 105 (114)
|.+.||.|+..|.-..+.......
T Consensus 92 D~~hdG~i~~~Ei~~~l~~~gi~l 115 (463)
T KOG0036|consen 92 DLEHDGKIDPNEIWRYLKDLGIQL 115 (463)
T ss_pred ccccCCccCHHHHHHHHHHhCCcc
Confidence 999999999999888887655443
No 54
>PLN02964 phosphatidylserine decarboxylase
Probab=98.83 E-value=1.2e-08 Score=74.29 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=55.5
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKG 62 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 62 (114)
+|..+|.+++|.|+++||+.++..+....+.+++..+|+.+|++++|.|+.+||..++..
T Consensus 184 mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 184 ILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 578899999999999999999988766678889999999999999999999999999987
No 55
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.82 E-value=1.8e-08 Score=56.06 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=53.8
Q ss_pred cchhhccc-CC-CCceeHHHHHHHHHh---hchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 2 LTKTEADI-DG-NRTIVYIEFITATMQ---RHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 2 ~~~~~~D~-~~-~g~i~~~ef~~~~~~---~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
.+|+.+|. ++ +|.|+.+|+..++.. +....+.+.+..+++.+|.+++|.|+++||..++..+
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 47889998 77 899999999999963 3555678899999999999999999999999888665
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=98.81 E-value=3.5e-08 Score=51.51 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=56.2
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhch-hchHHHHHHHHHhhcCCCC-CcccHHHHHHHHHh
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHK-LERFERLYKAFQHFDKDNT-GYITVDELETAFKG 62 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~-~~~~~~~~~~f~~~d~~~~-g~i~~~e~~~~l~~ 62 (114)
..|+.+|+++.|.|....++.+++.+.. .+++..++.+.+.+|+++. |.|+++.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999998855 8899999999999999998 99999999999864
No 57
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.81 E-value=2.5e-08 Score=56.30 Aligned_cols=59 Identities=19% Similarity=0.110 Sum_probs=52.0
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
.|..+|++++|.|+.+++..++.... .+...+..+++.+|.+++|.|+++||..++..+
T Consensus 15 ~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 15 IFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 58899999999999999999998753 456779999999999999999999999888643
No 58
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.79 E-value=1.3e-08 Score=44.94 Aligned_cols=26 Identities=42% Similarity=0.724 Sum_probs=13.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH
Q 048406 36 LYKAFQHFDKDNTGYITVDELETAFK 61 (114)
Q Consensus 36 ~~~~f~~~d~~~~g~i~~~e~~~~l~ 61 (114)
+..+|+.+|+|++|.|+++||+.+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34455555555555555555555544
No 59
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.76 E-value=3.8e-08 Score=54.87 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=51.1
Q ss_pred chhh-cccCCCC-ceeHHHHHHHHHhhc-----hhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTE-ADIDGNR-TIVYIEFITATMQRH-----KLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~-~D~~~~g-~i~~~ef~~~~~~~~-----~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
+|+. +|++++| .|+.+||..++.... .......+..+++.+|.+++|.|+++||..++..+
T Consensus 14 ~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 14 VFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5777 7788876 999999999997652 23446789999999999999999999999988765
No 60
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.74 E-value=4.1e-08 Score=54.48 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=51.8
Q ss_pred chhhccc--CCCCceeHHHHHHHHHh-hchh----chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEADI--DGNRTIVYIEFITATMQ-RHKL----ERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D~--~~~g~i~~~ef~~~~~~-~~~~----~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
.|..+|+ +++|.|+..++..++.. .... .....+..++..+|.+++|.|++++|..++...
T Consensus 13 ~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 13 VFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5889999 89999999999999875 3322 247889999999999999999999999888654
No 61
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.72 E-value=3.3e-09 Score=73.01 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=72.2
Q ss_pred cccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC------CCC------Cccc-HHH
Q 048406 7 ADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY------NMG------DDVT-IAM 73 (114)
Q Consensus 7 ~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~------g~~------~~~~-~~~ 73 (114)
++.+.+|.|+|.||+-++..+.. +...+..+|++||.|++|-|+.+||..+.+.+ |.. ...+ ..+
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS~--p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~ 285 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLSI--PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVE 285 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHcc--CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhh
Confidence 56688999999999999888753 55668899999999999999999999888533 210 0111 112
Q ss_pred HHH--HHHHhCCCCCCceeHHHHHHHHhcCccccc
Q 048406 74 KKE--IMSEVDRDKDGRISYDEFRAMMKSGTHLQA 106 (114)
Q Consensus 74 ~~~--~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 106 (114)
+.. ...-+..++++++++++|..++.+.++...
T Consensus 286 ~nsaL~~yFFG~rg~~kLs~deF~~F~e~Lq~Eil 320 (489)
T KOG2643|consen 286 VNSALLTYFFGKRGNGKLSIDEFLKFQENLQEEIL 320 (489)
T ss_pred hhhhHHHHhhccCCCccccHHHHHHHHHHHHHHHH
Confidence 222 333457788899999999999988776543
No 62
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.69 E-value=4e-08 Score=43.35 Aligned_cols=28 Identities=46% Similarity=0.827 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHhc
Q 048406 73 MKKEIMSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 73 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
+++.+|+.+|.|++|+|+++||..++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4688999999999999999999998864
No 63
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.57 E-value=7.2e-07 Score=49.65 Aligned_cols=67 Identities=18% Similarity=0.474 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhC-C--CCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q 048406 33 FERLYKAFQHFDKDNTGYITVDELETAFKGY-N--MGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 33 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-g--~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
...+...|..+.. +.+.++..||+.++..- + +........++.+++..|.|+||.|+|.||..++..
T Consensus 7 i~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 7 MEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3456778888884 45799999999999642 1 112345678899999999999999999999988754
No 64
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.54 E-value=1.9e-07 Score=41.80 Aligned_cols=29 Identities=38% Similarity=0.745 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH-hCC
Q 048406 36 LYKAFQHFDKDNTGYITVDELETAFK-GYN 64 (114)
Q Consensus 36 ~~~~f~~~d~~~~g~i~~~e~~~~l~-~~g 64 (114)
++.+|+.+|++++|.|+.+||..+++ .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56788888888888888888888887 354
No 65
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.53 E-value=1.1e-06 Score=50.23 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=54.6
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
.....+..+|..+++ ++|.|+.++.+.++.+.| +..+.+..|+...|.+++|+++++||+-.|+=
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~----L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG----LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT----SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC----CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 455778889999986 579999999999999886 55677899999999999999999999876653
No 66
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.53 E-value=3.3e-07 Score=50.95 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=51.1
Q ss_pred cchhhcccC--CCCceeHHHHHHHHHh-hchhch----HHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 2 LTKTEADID--GNRTIVYIEFITATMQ-RHKLER----FERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 2 ~~~~~~D~~--~~g~i~~~ef~~~~~~-~~~~~~----~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
.+|+.++.. .+|.|+.+|+..++.. .....+ ...+..+|+.+|.+++|.|++++|..++..+
T Consensus 12 ~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 12 NVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 357778765 4799999999999974 343344 7889999999999999999999999888654
No 67
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.48 E-value=2.7e-07 Score=53.63 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=47.7
Q ss_pred hhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHH
Q 048406 29 KLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAM 97 (114)
Q Consensus 29 ~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 97 (114)
.......+...|..+|.|++|.++..|+..+...+ . ....++..++...|.|++|.|+..||..+
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-M---PPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-S---TTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-h---hhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 34556788899999999999999999998776544 1 33456788999999999999999999864
No 68
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.46 E-value=1.4e-06 Score=43.13 Aligned_cols=47 Identities=21% Similarity=0.445 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q 048406 51 ITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMK 99 (114)
Q Consensus 51 i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 99 (114)
+++.|++.+|+.+. ..++...+..+|+.+|++++|++..+||..++.
T Consensus 2 msf~Evk~lLk~~N--I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMN--IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT------HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc--cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 45666666666663 245566666666666666666666666666654
No 69
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.45 E-value=1.2e-06 Score=43.29 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=41.3
Q ss_pred ceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 14 TIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 14 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
.++|.|...+++.++....+..+..+|+.+|++++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47899999999999888999999999999999999999999999988653
No 70
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.45 E-value=1.6e-06 Score=52.38 Aligned_cols=64 Identities=19% Similarity=0.369 Sum_probs=45.2
Q ss_pred hchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q 048406 30 LERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMK 99 (114)
Q Consensus 30 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 99 (114)
+.+.+++..+|.++|.|++|.|..++++..+..+|.. .+++++..+++.. .|.|.|.-|+.++-
T Consensus 28 q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~--~~d~elDaM~~Ea----~gPINft~FLTmfG 91 (171)
T KOG0031|consen 28 QSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI--ASDEELDAMMKEA----PGPINFTVFLTMFG 91 (171)
T ss_pred HHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHhC----CCCeeHHHHHHHHH
Confidence 4567899999999999999999999999999998743 4455544444433 23444444444443
No 71
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.45 E-value=4.9e-07 Score=60.62 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=80.5
Q ss_pred chhhcccCCCCceeHHHHHHHHHhh-chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC-CCCCcccHHHHHHHHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQR-HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY-NMGDDVTIAMKKEIMSE 80 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-g~~~~~~~~~~~~~~~~ 80 (114)
+|.++|.+++|.++|-+..-.+..+ ++......++-+|++|+...||.+.-.+|..+++.. |. ..+. +.-+|..
T Consensus 264 ~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv-~~l~---v~~lf~~ 339 (412)
T KOG4666|consen 264 TFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV-EVLR---VPVLFPS 339 (412)
T ss_pred hhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc-ceee---ccccchh
Confidence 6889999999999999999888877 566778999999999999999999999998888754 33 2222 3558888
Q ss_pred hCCCCCCceeHHHHHHHHhcCcc
Q 048406 81 VDRDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 81 ~d~~~~g~i~~~ef~~~l~~~~~ 103 (114)
.+...+|+|.+++|..++.....
T Consensus 340 i~q~d~~ki~~~~f~~fa~~~p~ 362 (412)
T KOG4666|consen 340 IEQKDDPKIYASNFRKFAATEPN 362 (412)
T ss_pred hhcccCcceeHHHHHHHHHhCch
Confidence 98888999999999988876543
No 72
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.36 E-value=2e-06 Score=59.78 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=49.4
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
.....+..+|+.+|.+++|.|+.+||.. ++.+|..+|.|++|.|+++||...+....
T Consensus 331 ~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 331 AFTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3457889999999999999999999841 36799999999999999999999887644
No 73
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.36 E-value=4.7e-07 Score=63.70 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=51.2
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
+-...|..+||.|+|+||+.+-..++. ++.....+|+.||+.++|.+|++++.+++...
T Consensus 79 la~iaD~tKDglisf~eF~afe~~lC~--pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 79 LASIADQTKDGLISFQEFRAFESVLCA--PDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHhhhhhcccccccHHHHHHHHhhccC--chHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 345678899999999999988766664 57788999999999999999999999999765
No 74
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.31 E-value=5.6e-06 Score=52.16 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=75.8
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHH--
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSE-- 80 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~-- 80 (114)
+|..+|.+.||-|++.|++.++.++...-+.-.+..+.+..|.|.+|.||+.||--++++...++-..+..+..+-+.
T Consensus 104 ~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LAr~~e 183 (244)
T KOG0041|consen 104 MFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLARLSE 183 (244)
T ss_pred HHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHHHhcc
Confidence 688999999999999999999999988788888999999999999999999999988887633322334444444444
Q ss_pred hCCCCCCceeHHHHHHHH
Q 048406 81 VDRDKDGRISYDEFRAMM 98 (114)
Q Consensus 81 ~d~~~~g~i~~~ef~~~l 98 (114)
.|....|...-..|...-
T Consensus 184 VDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 184 VDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred cchhhhhhhhHHHHHHHH
Confidence 677777777667776543
No 75
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.31 E-value=1.9e-06 Score=60.03 Aligned_cols=62 Identities=21% Similarity=0.154 Sum_probs=54.7
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhc----hhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRH----KLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~----~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
.+|..+|.|.+|.|+.+||..++..+. ..-+.+.+..+-+..|-|++|.|.++||-++++..
T Consensus 551 tiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 551 TIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 479999999999999999999988663 34567888999999999999999999999998765
No 76
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.29 E-value=1.4e-06 Score=36.99 Aligned_cols=21 Identities=43% Similarity=0.803 Sum_probs=10.1
Q ss_pred HHHHhhcCCCCCcccHHHHHH
Q 048406 38 KAFQHFDKDNTGYITVDELET 58 (114)
Q Consensus 38 ~~f~~~d~~~~g~i~~~e~~~ 58 (114)
.+|+.+|.|++|.|+.+||.+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 344444555555555444444
No 77
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.25 E-value=4.4e-06 Score=65.33 Aligned_cols=70 Identities=23% Similarity=0.438 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHH-----HHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 33 FERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIA-----MKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 33 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~-----~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
..++..+|+.||++++|.++..+|+.+|+.+|+.-|+..+ .++.++...|++.+|.|+..+|..+|.+.-
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 4678889999999999999999999999999987554444 789999999999999999999999997643
No 78
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.24 E-value=2.4e-06 Score=59.39 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=42.6
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKG 62 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 62 (114)
.+|+.+|++++|.|+.+||.. ...+|..+|.|++|.|+++||...++.
T Consensus 338 ~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 338 EIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 368999999999999999952 467899999999999999999998864
No 79
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.16 E-value=5.4e-06 Score=35.20 Aligned_cols=25 Identities=36% Similarity=0.781 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHH
Q 048406 74 KKEIMSEVDRDKDGRISYDEFRAMM 98 (114)
Q Consensus 74 ~~~~~~~~d~~~~g~i~~~ef~~~l 98 (114)
++.+|..+|.|++|.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3678999999999999999998753
No 80
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.12 E-value=1.9e-05 Score=61.93 Aligned_cols=92 Identities=10% Similarity=0.117 Sum_probs=73.1
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchh-------chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKL-------ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMK 74 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~-------~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~ 74 (114)
.+|+.+|++.+|.+++.+|..++..++.. .++..+..+....||+.+|+|++.++..+|-+--..+-.+.+++
T Consensus 2257 ~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eI 2336 (2399)
T KOG0040|consen 2257 MMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEI 2336 (2399)
T ss_pred HHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHH
Confidence 47899999999999999999999887543 23568999999999999999999999998855422233556788
Q ss_pred HHHHHHhCCCCCCceeHHHH
Q 048406 75 KEIMSEVDRDKDGRISYDEF 94 (114)
Q Consensus 75 ~~~~~~~d~~~~g~i~~~ef 94 (114)
+..|+.++. +..+|+.++.
T Consensus 2337 E~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2337 EDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred HHHHHHhhc-CCccccHHHH
Confidence 999999987 4446666654
No 81
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.07 E-value=6.8e-05 Score=52.33 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=68.4
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCC-CCCcccHHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYN-MGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g-~~~~~~~~~~~~~~~~~ 81 (114)
+...+.+++++.+++++|..++..+ +.+-+..-|..+|+..+|.|+..+|..++-.+. .+.......++++-+.+
T Consensus 291 ~~yFFG~rg~~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf 366 (489)
T KOG2643|consen 291 LTYFFGKRGNGKLSIDEFLKFQENL----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKF 366 (489)
T ss_pred HHHhhccCCCccccHHHHHHHHHHH----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhc
Confidence 4556788999999999999997655 456677779999999999999999988886552 22122233566777777
Q ss_pred CCCCCCceeHHHHHHHHh
Q 048406 82 DRDKDGRISYDEFRAMMK 99 (114)
Q Consensus 82 d~~~~g~i~~~ef~~~l~ 99 (114)
+.+ +-.|++.||.++..
T Consensus 367 ~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 367 KDD-GKGISLQEFKAFFR 383 (489)
T ss_pred cCC-CCCcCHHHHHHHHH
Confidence 655 44699999876654
No 82
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.07 E-value=8.2e-07 Score=51.61 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=40.6
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELET 58 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~ 58 (114)
|.|..+|.|+||.|+..|+..+...+ .+.+.-+...++.+|.|++|.||+.|+..
T Consensus 58 W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 58 WKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 67999999999999999988876655 34445578899999999999999999864
No 83
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.01 E-value=1.6e-05 Score=35.43 Aligned_cols=28 Identities=32% Similarity=0.640 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCCCCceeHHHHHHHHhc
Q 048406 73 MKKEIMSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 73 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
+++.+|+.+|.+++|+|+.+||..++.+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3578999999999999999999999873
No 84
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.99 E-value=3.7e-05 Score=42.83 Aligned_cols=60 Identities=8% Similarity=0.050 Sum_probs=48.3
Q ss_pred chhhcccCCCCceeHHHHHHHHHhh-----chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQR-----HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~-----~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
+|+.+- ...+.++..||..++..- ........+..+++.+|.|++|.|++.||..++..+
T Consensus 13 ~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 13 TFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 466665 345799999999998643 233456789999999999999999999999998766
No 85
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.79 E-value=0.00013 Score=52.00 Aligned_cols=70 Identities=34% Similarity=0.524 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCC-cccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCcc
Q 048406 33 FERLYKAFQHFDKDNTGYITVDELETAFKGYNMGD-DVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 33 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 103 (114)
...+...|...| +++|+|+..++..++.+.+.+. ....++++.++...+.|.+|.|+|++|+..+.....
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 345777899999 9999999999999999886542 234789999999999999999999999997766443
No 86
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.78 E-value=0.00011 Score=40.22 Aligned_cols=67 Identities=16% Similarity=0.389 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCC----CCCceeHHHHHHHHhcCc
Q 048406 35 RLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRD----KDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 35 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~~ 102 (114)
++..+|..+.. +.+.++.++|..+|+.--.....+.+.+..++..+.++ ..+.+++++|..+|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36778999965 78999999999999876322245788889999998654 368999999999997764
No 87
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.73 E-value=4e-05 Score=49.98 Aligned_cols=63 Identities=24% Similarity=0.343 Sum_probs=47.5
Q ss_pred CcchhhcccCCCCceeHHHHHHHHHhhch---hchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 1 MLTKTEADIDGNRTIVYIEFITATMQRHK---LERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 1 ~~~~~~~D~~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
|.+|...|.|.+|.|+-.|..+-+.+... +.....-..-|+..|++++|.|+-+|++.-+...
T Consensus 104 mviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 104 MVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 45899999999999999998887654422 2223334445899999999999999997666544
No 88
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.72 E-value=0.0002 Score=41.03 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=47.7
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
+|...|+ ++|.|+-++-..++... ..+.+.+..+|.+.|.+++|.++.+||.-++..+
T Consensus 15 ~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 15 IFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 5777775 68999999988887655 3567889999999999999999999998887644
No 89
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.70 E-value=0.00014 Score=51.15 Aligned_cols=86 Identities=15% Similarity=0.285 Sum_probs=64.7
Q ss_pred CCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHh-------CCCCCccc-HHHHHHHHHHh
Q 048406 10 DGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKG-------YNMGDDVT-IAMKKEIMSEV 81 (114)
Q Consensus 10 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-------~g~~~~~~-~~~~~~~~~~~ 81 (114)
-.+|.++|++|..++.-+-...+.+.++-+|+.+|.+++|.++..|+.-+... +|. .+.. .+....++.-.
T Consensus 327 ~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~-e~l~fed~l~qi~DMv 405 (493)
T KOG2562|consen 327 KVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQ-EALPFEDALCQIRDMV 405 (493)
T ss_pred eecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHh
Confidence 46788999999998877655566777899999999999999999998766643 232 3333 34455566666
Q ss_pred CCCCCCceeHHHHHH
Q 048406 82 DRDKDGRISYDEFRA 96 (114)
Q Consensus 82 d~~~~g~i~~~ef~~ 96 (114)
.+...++|+..+|..
T Consensus 406 kP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 406 KPEDENKITLQDLKG 420 (493)
T ss_pred CccCCCceeHHHHhh
Confidence 667788999999876
No 90
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.58 E-value=0.00011 Score=47.96 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=63.6
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhch---------HHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLER---------FERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAM 73 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~---------~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~ 73 (114)
++..+|+|++..++..+|+...-....... .......=..+|.|.+|.++++|+...+--. +......+
T Consensus 241 ivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~--n~~~alne 318 (362)
T KOG4251|consen 241 IVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQ--NFRLALNE 318 (362)
T ss_pred HHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCch--hhhhhHHH
Confidence 567889999999999999876432211111 1223333457799999999999988775322 12244566
Q ss_pred HHHHHHHhCCCCCCceeHHHHHH
Q 048406 74 KKEIMSEVDRDKDGRISYDEFRA 96 (114)
Q Consensus 74 ~~~~~~~~d~~~~g~i~~~ef~~ 96 (114)
+..++..-|.+++.+++.++.+.
T Consensus 319 ~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 319 VNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHhhhccCCCcccCHHHHHH
Confidence 77788888999999999998763
No 91
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.00033 Score=40.55 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC------CC-CCc-ccHHH----HHHHHHHhCCCCCCceeHHHHHHHH
Q 048406 32 RFERLYKAFQHFDKDNTGYITVDELETAFKGY------NM-GDD-VTIAM----KKEIMSEVDRDKDGRISYDEFRAMM 98 (114)
Q Consensus 32 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~------g~-~~~-~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~l 98 (114)
+++---..|++.|-+++|.+.--|+..++.-. |. +.+ .+..+ +..+++.-|.|++|.|+|.||+...
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 44555567999999999999999998888643 32 223 23444 4445566688999999999998753
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.55 E-value=0.00016 Score=30.50 Aligned_cols=24 Identities=38% Similarity=0.653 Sum_probs=12.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHH
Q 048406 37 YKAFQHFDKDNTGYITVDELETAF 60 (114)
Q Consensus 37 ~~~f~~~d~~~~g~i~~~e~~~~l 60 (114)
..+|+.+|.+++|.|++.+|..++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 344555555555555555554444
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.41 E-value=0.00029 Score=29.60 Aligned_cols=27 Identities=37% Similarity=0.775 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHHhc
Q 048406 74 KKEIMSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 74 ~~~~~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
++.+|+.+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 467899999999999999999998864
No 94
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.34 E-value=0.00017 Score=51.27 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=59.7
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhch---hchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHK---LERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIM 78 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~ 78 (114)
..|+.+|+.++|.+|++++..+..+... .+-...-..+-..|.......+++.+|.+++..+ ..+..+..|
T Consensus 112 ~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~------~~E~~~qaf 185 (694)
T KOG0751|consen 112 VAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEF------QLEHAEQAF 185 (694)
T ss_pred HHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHH------HHHHHHHHH
Confidence 4688999999999999999999876521 1222222222224444455567777777777554 123345667
Q ss_pred HHhCCCCCCceeHHHHHHHHhcC
Q 048406 79 SEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 79 ~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
+..|..++|.|+--+|...+...
T Consensus 186 r~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 186 REKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HHhcccCCCeeeeechHhhhhhh
Confidence 77777777777766666665543
No 95
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.26 E-value=0.0022 Score=47.76 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=80.4
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVD 82 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d 82 (114)
+|+.+|++.+|.+++.+-..++..++..-....+...|+..+..+++.+...++..+....+.. . ++..+|..+.
T Consensus 141 ~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----p-ev~~~f~~~s 215 (746)
T KOG0169|consen 141 IFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----P-EVYFLFVQYS 215 (746)
T ss_pred HHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----c-hHHHHHHHHh
Confidence 5788999999999999999999999888889999999999999999999999999998777431 1 5677888887
Q ss_pred CCCCCceeHHHHHHHHhcCcc
Q 048406 83 RDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 83 ~~~~g~i~~~ef~~~l~~~~~ 103 (114)
.+ .+.++..++..++...+.
T Consensus 216 ~~-~~~ls~~~L~~Fl~~~q~ 235 (746)
T KOG0169|consen 216 HG-KEYLSTDDLLRFLEEEQG 235 (746)
T ss_pred CC-CCccCHHHHHHHHHHhcc
Confidence 55 678888888888876643
No 96
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.94 E-value=0.00088 Score=45.44 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCcc
Q 048406 33 FERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 33 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 103 (114)
+..+...|..+|+|+++.|...|++.+-+.+-. ......+.+.+++..|.|+|..|++.||..++.....
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k-~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLK-KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHh-hccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 335667799999999999999997655443311 1233677899999999999999999999999987654
No 97
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.93 E-value=0.0027 Score=44.90 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=68.1
Q ss_pred hhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHH----hhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHH
Q 048406 4 KTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQ----HFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMS 79 (114)
Q Consensus 4 ~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~----~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~ 79 (114)
|-.+|+|.+|.|+-++...+.... .+..-+.++|. .+-...+|.+++++|..++-..- ...+..-++-.|+
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~t---lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e--~k~t~~SleYwFr 358 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDHT---LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE--DKDTPASLEYWFR 358 (493)
T ss_pred HhhhccccccccCHHHHHHHhccc---hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc--cCCCccchhhhee
Confidence 557899999999999987765433 23555777787 44455789999999998886552 2233444588999
Q ss_pred HhCCCCCCceeHHHHHHHHhc
Q 048406 80 EVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 80 ~~d~~~~g~i~~~ef~~~l~~ 100 (114)
-+|.+++|.|+..|...++..
T Consensus 359 clDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 359 CLDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred eeeccCCCcccHHHHHHHHHH
Confidence 999999999999987666544
No 98
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.86 E-value=0.0011 Score=45.08 Aligned_cols=61 Identities=18% Similarity=0.084 Sum_probs=52.2
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhh-chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQR-HKLERFERLYKAFQHFDKDNTGYITVDELETAFKG 62 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 62 (114)
|.|..+|+|.++.|...|++.+-..+ .......-.+.+|+..|.|+|..|++.|++..|..
T Consensus 337 w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 337 WYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 67899999999999999988876655 44567788899999999999999999999887743
No 99
>PLN02952 phosphoinositide phospholipase C
Probab=96.79 E-value=0.026 Score=41.71 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=64.0
Q ss_pred CCCceeHHHHHHHHHhhc--hhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCC-----
Q 048406 11 GNRTIVYIEFITATMQRH--KLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDR----- 83 (114)
Q Consensus 11 ~~g~i~~~ef~~~~~~~~--~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~----- 83 (114)
+.|.++|.+|..+.+.+. ...+..++..+|..+..++ +.++.++|..+|.....-...+.+.++.++..+-.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 468999999988877663 3346788999999997544 68999999999987632122455666666554311
Q ss_pred --CCCCceeHHHHHHHHhcC
Q 048406 84 --DKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 84 --~~~g~i~~~ef~~~l~~~ 101 (114)
...+.++++.|..+|...
T Consensus 92 ~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred ccccccCcCHHHHHHHHcCc
Confidence 123458999999999753
No 100
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.77 E-value=0.0086 Score=36.31 Aligned_cols=61 Identities=16% Similarity=0.056 Sum_probs=48.3
Q ss_pred chhhcccCCCCceeHHHHHHHHHhh-chhchH----HHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQR-HKLERF----ERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~-~~~~~~----~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
.|+.+|=|+++.|.-.+.-..+..+ ....+. ..+.++..-.|.+++|.+++.||..++...
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 4788999999999999999888776 333343 344555677799999999999999988654
No 101
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.73 E-value=0.0042 Score=42.56 Aligned_cols=68 Identities=22% Similarity=0.171 Sum_probs=56.8
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccc
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHL 104 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 104 (114)
.....+-.+|..+|.|.+|.++..|+..+- ......+++.+|...|...||.|+-.||..++.+...+
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~------ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~p 314 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIE------LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDPP 314 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhh------ccCchhHHHHHHhhhcccccCccccchhhhhhccCCCc
Confidence 456788899999999999999999987664 12446778999999999999999999999999876643
No 102
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.0077 Score=43.24 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=57.7
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
...++...-|+.+-++-.|.|+-.--+.++.+.. +...++..|++..|.+.||.+++.||+..++-.
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk----lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK----LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhcc----CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 4567788889999999999999998888887763 567788999999999999999999999888643
No 103
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.33 E-value=0.0076 Score=41.35 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=50.6
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCC
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYN 64 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g 64 (114)
|||...|.|.|+.++..|...+.. ...+.-+.-.|...|..++|.|+-.|+...+.+.+
T Consensus 254 WMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 254 WMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 899999999999999999777632 23456688889999999999999999999998774
No 104
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.55 E-value=0.18 Score=30.93 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=43.7
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhCCCC-CcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 40 FQHFDKDNTGYITVDELETAFKGYNMG-DDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 40 f~~~d~~~~g~i~~~e~~~~l~~~g~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
|..+-..+...++...|..+|+..++. ..++...++-+|..+-..+...|+|++|..+|....
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 333345566788899999999988764 336677788899987655566799999988886543
No 105
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.52 E-value=0.034 Score=41.08 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=34.5
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHH
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDE 93 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 93 (114)
.+..-..++|+.+|.+.+|.+++.++...+..+-. ....+.+..+|+.+|++++ ..+-++
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--GDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--hhHHHHHHHHHhhccCCcc-cccccc
Confidence 44555666677777777777777777666655421 1223444556666666655 444433
No 106
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.22 E-value=0.3 Score=36.96 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=76.0
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVD 82 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d 82 (114)
+|+..|...++.+...++..+.......+ .+...|..+-.+ .+.++.+++..++....-....+.+.++.+++.+.
T Consensus 177 ~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e 252 (746)
T KOG0169|consen 177 LFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYE 252 (746)
T ss_pred HHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhh
Confidence 56677788899999999999887775544 567777776554 79999999999998774334567788889998875
Q ss_pred CC----CCCceeHHHHHHHHhcCcccc
Q 048406 83 RD----KDGRISYDEFRAMMKSGTHLQ 105 (114)
Q Consensus 83 ~~----~~g~i~~~ef~~~l~~~~~~~ 105 (114)
.. ..+.++++.|..+|.......
T Consensus 253 ~~k~~~~~~~l~ldgF~~yL~S~~~~~ 279 (746)
T KOG0169|consen 253 PSKEFRRHGLLSLDGFTRYLFSPDCNP 279 (746)
T ss_pred hhhhccccceecHHHHHHHhcCccCCC
Confidence 43 346699999999998765444
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.05 Score=41.26 Aligned_cols=68 Identities=24% Similarity=0.330 Sum_probs=55.5
Q ss_pred chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHh
Q 048406 28 HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMK 99 (114)
Q Consensus 28 ~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 99 (114)
.+....-..+..|..+|+...|+++-..=+.+|...++ ....+-.|+..-|.|+||+++-+||.-.|.
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L----pq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL----PQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCC----chhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 34556678899999999999999999999999877764 333456788889999999999999976553
No 108
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.97 E-value=0.064 Score=29.09 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=45.6
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchh--chHHHHHHHHHhhcCC----CCCcccHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKL--ERFERLYKAFQHFDKD----NTGYITVDELETAFKG 62 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~--~~~~~~~~~f~~~d~~----~~g~i~~~e~~~~l~~ 62 (114)
+|..+-. +.+.|+.++|..++...... .+...+..++..+.++ ..+.+++++|...|..
T Consensus 5 if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 5 IFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5666634 78999999999999876332 3678888888888654 4799999999999854
No 109
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.61 E-value=0.1 Score=42.47 Aligned_cols=62 Identities=19% Similarity=0.387 Sum_probs=50.7
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccc
Q 048406 40 FQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHL 104 (114)
Q Consensus 40 f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 104 (114)
|+-+|+++.|.|+..+|..++..-. ..+..+++.++.-...|.+...+|++|+.-++.....
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k---~ytqse~dfllscae~dend~~~y~dfv~rfhepakd 4124 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHK---HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKD 4124 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccc---cchhHHHHHHHHhhccCccccccHHHHHHHhcCchhh
Confidence 6778999999999999999986542 3667777888888888888899999999888765443
No 110
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=94.59 E-value=0.15 Score=37.11 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=48.0
Q ss_pred hhhcccCCCCceeHHHHHHHHHhhchhc---hHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 048406 4 KTEADIDGNRTIVYIEFITATMQRHKLE---RFERLYKAFQHFDKDNTGYITVDELETAFKG 62 (114)
Q Consensus 4 ~~~~D~~~~g~i~~~ef~~~~~~~~~~~---~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 62 (114)
|..+| +++|.|+..+...++.+..... ..+.+..+....+.+.+|.|++++|..++..
T Consensus 25 F~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 25 FNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 66778 9999999999999998774322 3677888899999999999999999886643
No 111
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.25 E-value=0.067 Score=39.62 Aligned_cols=54 Identities=9% Similarity=0.080 Sum_probs=48.9
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDEL 56 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~ 56 (114)
.+|+..|.+++|.++|.+++..+..+......+.+.-+|+++|++++ ....++.
T Consensus 559 rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 559 RLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 37899999999999999999999999888888999999999999998 7777776
No 112
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=0.17 Score=29.59 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=42.9
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhch----------hchHHHHHHH----HHhhcCCCCCcccHHHHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHK----------LERFERLYKA----FQHFDKDNTGYITVDELETA 59 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~----------~~~~~~~~~~----f~~~d~~~~g~i~~~e~~~~ 59 (114)
..|...|-|+++.++=-|.+.++...+. ..++.++..+ .+--|.|++|+|.+.||...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 5688899999999999999988876632 1234444444 45568999999999998643
No 113
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.98 E-value=0.59 Score=36.40 Aligned_cols=84 Identities=11% Similarity=0.194 Sum_probs=65.7
Q ss_pred ceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCC----CC----CcccHHHHHHHHHHhCCCC
Q 048406 14 TIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYN----MG----DDVTIAMKKEIMSEVDRDK 85 (114)
Q Consensus 14 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g----~~----~~~~~~~~~~~~~~~d~~~ 85 (114)
..+++.|..++.++++ ..++..+|..+-.++.-+++.++|..++++-- ++ ++.....+..+++.+-.+.
T Consensus 204 ~f~~e~f~~~l~klcp---R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 204 DFTLEKFYRLLNKLCP---RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred hccHHHHHHHHHhcCC---chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 3456677777777754 35588899999988889999999999997541 11 3455677899999997765
Q ss_pred ----CCceeHHHHHHHHhc
Q 048406 86 ----DGRISYDEFRAMMKS 100 (114)
Q Consensus 86 ----~g~i~~~ef~~~l~~ 100 (114)
.|+|+-+.|+.+++.
T Consensus 281 ~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhccccchhhhHHHhhC
Confidence 489999999999987
No 114
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=93.91 E-value=0.2 Score=34.45 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccc
Q 048406 33 FERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHL 104 (114)
Q Consensus 33 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 104 (114)
.+.+...|.+||.+.+|.+++.|....+..+- +.+.+.+-++..|+.++.+.||.+.-.+|...++...+.
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc-~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv 328 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLC-GPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV 328 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeee-CCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc
Confidence 37788899999999999999999877776552 244567778889999999999999999998888775543
No 115
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.82 E-value=0.33 Score=30.32 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 71 IAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 71 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
.+..+++|..++..+.+.+++.|...++...-
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 56688899999887778899999988887643
No 116
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.80 E-value=0.2 Score=38.70 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=59.1
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCccc---HHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccccc
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVT---IAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHLQA 106 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~---~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 106 (114)
.-..+++..|+.+++...|..+.+++...+..+|.+.... ..++..+....|.+..|++++.+|...|.+.+....
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~ 822 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLD 822 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhc
Confidence 3457888999999999999999999999999988753221 234555555667777799999999999998876654
No 117
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.77 E-value=0.039 Score=29.21 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=37.5
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCC---CCCceeHHHHHHHH
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRD---KDGRISYDEFRAMM 98 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~l 98 (114)
.+.+.+..+|+.+ .++.++|+.++|++.|.. ....-++..+-..-+.+ ..|.++|..|+..+
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-----e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-----EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-----CCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcCc-----HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 3456788899999 677799999999988621 12222222222222222 23679999987543
No 118
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=0.2 Score=36.43 Aligned_cols=57 Identities=19% Similarity=0.095 Sum_probs=42.0
Q ss_pred hhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 048406 4 KTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKG 62 (114)
Q Consensus 4 ~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 62 (114)
|+.+-+|-.|.|+=.-=+.++.+. ..+..++..+|.+.|.+++|.+++.||+.++..
T Consensus 237 FrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 237 FRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 445556666666655444444443 346788999999999999999999999998853
No 119
>PLN02952 phosphoinositide phospholipase C
Probab=93.16 E-value=0.35 Score=36.01 Aligned_cols=57 Identities=9% Similarity=0.180 Sum_probs=45.0
Q ss_pred CCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccc
Q 048406 47 NTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHL 104 (114)
Q Consensus 47 ~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 104 (114)
+.|.+++++|..+.+.+.........++..+|..+..++ +.|+.++|..+|...+..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e 69 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDE 69 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCC
Confidence 458999999988887774333345789999999997544 689999999999887754
No 120
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.92 E-value=0.31 Score=35.96 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=56.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 34 ERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 34 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
.....-|..+|.++.|+++.++...+|+..+. ..+.+.+.+++...+.+..|.+...+|..++....
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~--~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENV--GWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 45556799999999999999999999998863 36667778888999988899999999998887644
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.65 E-value=1.6 Score=27.36 Aligned_cols=65 Identities=22% Similarity=0.321 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCC-Cc----ccHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 048406 33 FERLYKAFQHFDKDNTGYITVDELETAFKGYNMG-DD----VTIAMKKEIMSEVDRDKDGRISYDEFRAMM 98 (114)
Q Consensus 33 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~-~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 98 (114)
.+.+..+|..+++.+.+.++..|+.++++.-... .+ .+.-|...++..+ .+.+|.+..+.-..++
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 4899999999999889999999999998753211 11 1122333344444 4678899988876655
No 122
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=92.50 E-value=0.55 Score=35.83 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=68.4
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcc------cHHHHHHHHHhCC-------CCCc
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYI------TVDELETAFKGYN-------MGDD 68 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i------~~~e~~~~l~~~g-------~~~~ 68 (114)
|+..++|+..+|.|..-+|+-.+..++.....+.++-+|+.....+...+ -+.++.++.+.+| .+.+
T Consensus 474 ~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~q~~l~lLL~dliqipr~lGE~aAfGgsNve 553 (966)
T KOG4286|consen 474 WLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCDQRRLGLLLHDLIQIPRQLGEVAAFGGSNIE 553 (966)
T ss_pred HHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCC
Confidence 56789999999999999999999999888899999999999986665553 2334444444442 2222
Q ss_pred ccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 69 VTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 69 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
++ ++.+|.. .++--.|.+..|..++...+
T Consensus 554 ps---vrsCF~~--v~~~pei~~~~f~dw~~~ep 582 (966)
T KOG4286|consen 554 PS---VRSCFQF--VNNKPEIEAALFLDWMRLEP 582 (966)
T ss_pred hH---HHHHHHh--cCCCCcchHHHHHHHhccCc
Confidence 22 3566662 33444689999988876543
No 123
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.11 E-value=0.19 Score=34.32 Aligned_cols=68 Identities=21% Similarity=0.354 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHhC---CCCC--c---cc---H---HHHHHHHHHhCCCCCCceeHHHHHHHHhc
Q 048406 35 RLYKAFQHFDKDNTGYITVDELETAFKGY---NMGD--D---VT---I---AMKKEIMSEVDRDKDGRISYDEFRAMMKS 100 (114)
Q Consensus 35 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~---g~~~--~---~~---~---~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 100 (114)
.-...|.+.|.|++|.++--|+..++.+- -+.+ + +. . ..-+.+++..|+|.+.-|+.+||++.-.+
T Consensus 245 dPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 245 DPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred CcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 34456788899999999999988777532 0110 0 00 0 11345888999999999999999987655
Q ss_pred Cc
Q 048406 101 GT 102 (114)
Q Consensus 101 ~~ 102 (114)
..
T Consensus 325 ke 326 (442)
T KOG3866|consen 325 KE 326 (442)
T ss_pred cc
Confidence 43
No 124
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.18 E-value=1.6 Score=24.33 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=39.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhC-------CCCCc--ccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 34 ERLYKAFQHFDKDNTGYITVDELETAFKGY-------NMGDD--VTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 34 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------g~~~~--~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
++.+.+|+.+ .+++|.++...|..+|..+ |.... ....-++.+|.... ....|+.++|+.++...+
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCC
Confidence 5677788888 5778999988887777643 22111 13455677777763 345799999999998764
No 125
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.03 E-value=1.5 Score=32.76 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCC-CCCCceeHHHHHHHHhcC
Q 048406 32 RFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDR-DKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 32 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~l~~~ 101 (114)
+..++..+|..+.. ++.++.++|..+|.....-...+.+.++.++..+.. ...+.++++.|..+|...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 45589999999864 479999999999987632123456777888887643 235679999999999873
No 126
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.02 E-value=0.28 Score=37.49 Aligned_cols=58 Identities=17% Similarity=0.044 Sum_probs=46.4
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFK 61 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 61 (114)
++|...|+..+|.+|=..=..++... ..+...+..+|.+-|.|+||.++.+||.-++.
T Consensus 199 QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 199 QLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 47899999999999877766655443 34566788899999999999999999976654
No 127
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.85 E-value=0.71 Score=34.83 Aligned_cols=83 Identities=22% Similarity=0.301 Sum_probs=62.1
Q ss_pred CCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC---C---CCCcccHHHHHHHHHHhCCCC
Q 048406 12 NRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY---N---MGDDVTIAMKKEIMSEVDRDK 85 (114)
Q Consensus 12 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~---g---~~~~~~~~~~~~~~~~~d~~~ 85 (114)
++ ++++++. ......+..++.+|.+.|. ++|.++.+++..++... + .......+....++...|.+.
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDH 74 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccc
Confidence 56 8999988 4456678899999999998 88999999988887643 1 112234556677888888888
Q ss_pred CCceeHHHHHHHHhcC
Q 048406 86 DGRISYDEFRAMMKSG 101 (114)
Q Consensus 86 ~g~i~~~ef~~~l~~~ 101 (114)
.|.+.++++...+...
T Consensus 75 ~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 75 KGYITNEDLEILLLQI 90 (646)
T ss_pred cceeeecchhHHHHhc
Confidence 8888888777666543
No 128
>PLN02228 Phosphoinositide phospholipase C
Probab=90.52 E-value=2.1 Score=31.85 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=51.9
Q ss_pred hchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCC----CCCceeHHHHHHHHhcC
Q 048406 30 LERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRD----KDGRISYDEFRAMMKSG 101 (114)
Q Consensus 30 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~~ 101 (114)
..+..++..+|..+..+ +.++.++|..+|.....-.....+.+..++..+... ..|.++.+.|..+|...
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 34677899999988643 689999999999876321224456678888887543 24679999999999764
No 129
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=89.62 E-value=2.3 Score=31.74 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCCceeHHHHHHHHhcCcccc
Q 048406 72 AMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHLQ 105 (114)
Q Consensus 72 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 105 (114)
+-+..+|..+|.|+||.+.-.|+..++...+...
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p 348 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP 348 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC
Confidence 3477899999999999999999999888766443
No 130
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=89.18 E-value=2.1 Score=22.66 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=35.4
Q ss_pred CCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 12 NRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 12 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
+-.|+|.....++....+......+...|..+ +.+.|+.+||.+.++.+
T Consensus 6 sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~---k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKHLPPSKMDLLQKHYEEF---KKKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHHCCHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHH
Confidence 55678888777777665444445555555555 67899999999999877
No 131
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=88.44 E-value=2.5 Score=29.15 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=41.4
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhh-----chhchHHHH-----------HHHHHhhcCCCCCcccHHHHHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQR-----HKLERFERL-----------YKAFQHFDKDNTGYITVDELETAF 60 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~-----~~~~~~~~~-----------~~~f~~~d~~~~g~i~~~e~~~~l 60 (114)
+.|.+.|.|++|.++-.|+-+.+.+. .....++.+ ..+-+..|.|.+..|+++||...-
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 57889999999999999988776532 111222222 233567899999999999985443
No 132
>PLN02230 phosphoinositide phospholipase C 4
Probab=88.08 E-value=4.3 Score=30.54 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=50.6
Q ss_pred hchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCC-CcccHHHHHHHHHHhCC-------CCCCceeHHHHHHHHhcC
Q 048406 30 LERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMG-DDVTIAMKKEIMSEVDR-------DKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 30 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~-~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~l~~~ 101 (114)
..+..++..+|..+..++ +.++.++|..+|....-. ...+.+.++.++..+-. -..+.++.+.|..+|...
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 346678999999996544 899999999999876311 12345666777765421 123569999999999774
No 133
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=86.34 E-value=4 Score=22.54 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=32.6
Q ss_pred CceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 13 RTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 13 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
-.|.+.+|...+...++.....+...+=..+|-..+++||.=||--+.+-.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 457777777777777666665666666667777777777777766555544
No 134
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=85.96 E-value=0.35 Score=31.01 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=12.5
Q ss_pred HHHHHHHhCCCCCCceeHHHHHHHH
Q 048406 74 KKEIMSEVDRDKDGRISYDEFRAMM 98 (114)
Q Consensus 74 ~~~~~~~~d~~~~g~i~~~ef~~~l 98 (114)
...+|+..|.|+||.|+..||..++
T Consensus 224 ~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred chhhhhcccCCCCCceeHHHhhccc
Confidence 3445555555555555555554444
No 135
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.70 E-value=0.52 Score=36.62 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 33 FERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 33 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
...+..+|...|.+++|.|+..+....+...| +....+..++...|..+.|.+++.+|+..+....
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g----l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPFG----LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccCC----CChhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 35566689999999999999999888876654 5566778899999999999999999876665433
No 136
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=80.34 E-value=2.5 Score=24.72 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 69 VTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 69 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
++++.++.++..+-.|..|.|.|.+|+.-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 677888999999999999999999999877643
No 137
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=79.75 E-value=0.93 Score=29.16 Aligned_cols=57 Identities=19% Similarity=0.181 Sum_probs=44.8
Q ss_pred cchhhcccC-CCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 048406 2 LTKTEADID-GNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAF 60 (114)
Q Consensus 2 ~~~~~~D~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 60 (114)
|-|..+|.- -||.+|-.|++.+-.-+ .+.+.-....|...|.+++|+|++.|+...+
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeeccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 556677775 58999999877764444 3577788889999999999999999987665
No 138
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=79.42 E-value=2.8 Score=16.73 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.7
Q ss_pred CCCCcccHHHH
Q 048406 46 DNTGYITVDEL 56 (114)
Q Consensus 46 ~~~g~i~~~e~ 56 (114)
|++|.|+.-++
T Consensus 3 N~DG~vna~D~ 13 (21)
T PF00404_consen 3 NGDGKVNAIDL 13 (21)
T ss_dssp TSSSSSSHHHH
T ss_pred CCCCcCCHHHH
Confidence 44444444443
No 139
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=79.22 E-value=2.9 Score=31.19 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=50.9
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
-|+.+|.+..|.++..+.+..+......-+...+....+-.|.+.+|.++++||-+++..+
T Consensus 598 rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 598 RFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 3678899999999999988888877656677778888888888889999999998888765
No 140
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=77.46 E-value=31 Score=27.64 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=38.4
Q ss_pred cHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCcccccc
Q 048406 52 TVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHLQAN 107 (114)
Q Consensus 52 ~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 107 (114)
+++.|..++.++ ....+++.+|..+..++.-+++.+++..++...+...-.
T Consensus 206 ~~e~f~~~l~kl-----cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRL 256 (1189)
T KOG1265|consen 206 TLEKFYRLLNKL-----CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRL 256 (1189)
T ss_pred cHHHHHHHHHhc-----CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcch
Confidence 345556666555 234567899999998888899999999999988765443
No 141
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=76.93 E-value=4.3 Score=24.55 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=22.2
Q ss_pred CcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCC-------CCCCceeHHHHHHHHhcC
Q 048406 49 GYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDR-------DKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 49 g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~l~~~ 101 (114)
+.++-+||.++=+.+- .+...++.+++.+.. +..+.|+|+.|..+|..-
T Consensus 6 ~~lsp~eF~qLq~y~e----ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE----YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY 61 (138)
T ss_dssp S-S-HHHHHHHHHHHH----H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH
Confidence 4566666666544331 122233444444422 224578888887777653
No 142
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=74.01 E-value=5.9 Score=29.73 Aligned_cols=61 Identities=21% Similarity=0.391 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHH
Q 048406 33 FERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAM 97 (114)
Q Consensus 33 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 97 (114)
.+.+..+|..+|.++||.++-.|+..++...+..+-....+.+. --.+..|.+++.-|+..
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~----t~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS----TVKNERGWLTLNGFLSQ 374 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc----ceecccceeehhhHHHH
Confidence 37788889999999999999999999998774321000000000 00124678888887654
No 143
>PLN02223 phosphoinositide phospholipase C
Probab=73.55 E-value=23 Score=26.50 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=48.4
Q ss_pred hchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC---CCCCcccHHHHHHHHHHhCCCC--------CCceeHHHHHHHH
Q 048406 30 LERFERLYKAFQHFDKDNTGYITVDELETAFKGY---NMGDDVTIAMKKEIMSEVDRDK--------DGRISYDEFRAMM 98 (114)
Q Consensus 30 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~---g~~~~~~~~~~~~~~~~~d~~~--------~g~i~~~ef~~~l 98 (114)
..+.+.+..+|..+- .+.|..+.+.+.+++..+ .--...+.++++.++..+-... .+.++.+.|..+|
T Consensus 12 ~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 345677888999885 567899999998888433 1112344566666666553221 2569999999999
Q ss_pred hcC
Q 048406 99 KSG 101 (114)
Q Consensus 99 ~~~ 101 (114)
...
T Consensus 91 ~s~ 93 (537)
T PLN02223 91 FST 93 (537)
T ss_pred cCc
Confidence 874
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=72.85 E-value=18 Score=21.87 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=35.5
Q ss_pred CCceeHHHHHHHHHhhchhchHHHHHHHHHhhc-------CCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCC
Q 048406 12 NRTIVYIEFITATMQRHKLERFERLYKAFQHFD-------KDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRD 84 (114)
Q Consensus 12 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d-------~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~ 84 (114)
=+.++-.||.+.=.-.-. +..++..+.+.|. -+..+.|+++.|+.+|+.+-. .+...+-++.+|..+-..
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe-~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE-VDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT--S--HHHHHHHHHHS---
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc-CCCCHHHHHHHHHHHhCc
Confidence 367888888876443311 2223344433332 223458999999999986632 236677788888887543
Q ss_pred C
Q 048406 85 K 85 (114)
Q Consensus 85 ~ 85 (114)
.
T Consensus 82 ~ 82 (138)
T PF14513_consen 82 P 82 (138)
T ss_dssp -
T ss_pred c
Confidence 3
No 145
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.34 E-value=3.3 Score=29.26 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=49.4
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCccc-HHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVT-IAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
.+...+++.|+.+|+.++|+|+-+-+..++..... ..+ .+.+..+-...|+..-|-|-.++|..-+....
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~--~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p~t 376 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNR--LVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFPTT 376 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcc--cccCHHHHHHhcCccChhhcceEEeccccccccCcc
Confidence 34688999999999999999999999999887742 233 34444444556777767777776665554433
No 146
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=71.66 E-value=16 Score=20.78 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcc--cHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 34 ERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDV--TIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 34 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
..++.-|..+.+ +|.++.+.|-+++ |++... ..+....+-+.-... .+.|+.+|...+..+.
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHh
Confidence 345555666665 7899988888776 655222 234444444444433 4578888877766543
No 147
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=69.67 E-value=14 Score=31.39 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=40.8
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAF 60 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 60 (114)
.|+.+|+|+.|.|+..+|..++..-. ..+..++..+......+.+..+++++|..-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 58899999999999999999886442 1233334445555566677788888886655
No 148
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=67.51 E-value=24 Score=20.98 Aligned_cols=14 Identities=7% Similarity=0.050 Sum_probs=7.9
Q ss_pred CCceeHHHHHHHHH
Q 048406 12 NRTIVYIEFITATM 25 (114)
Q Consensus 12 ~g~i~~~ef~~~~~ 25 (114)
+..++..+....+.
T Consensus 57 d~~l~v~~l~~~L~ 70 (127)
T PF09068_consen 57 DSSLSVSQLETLLS 70 (127)
T ss_dssp TSEEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 34566666665543
No 149
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=66.67 E-value=30 Score=27.53 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=54.3
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchh-ch-HHHHHHHHHhh---cCCCCCcccHHHHHHHHHhCCCCCccc-HHHHHH
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKL-ER-FERLYKAFQHF---DKDNTGYITVDELETAFKGYNMGDDVT-IAMKKE 76 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~-~~-~~~~~~~f~~~---d~~~~g~i~~~e~~~~l~~~g~~~~~~-~~~~~~ 76 (114)
+|...++...|.+++++|++++..+... .. .+-+..+|++. |++.-|.+++.++...|..--. ..+ ...+-.
T Consensus 752 le~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e--~l~~~~r~i~ 829 (890)
T KOG0035|consen 752 LENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE--DLDTELRAIL 829 (890)
T ss_pred HHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh--hhcHHHHHHH
Confidence 4667788888999999999998877432 22 34444455544 4445588999998888854311 111 223333
Q ss_pred HHHHhCCCCCCceeHHHHHH
Q 048406 77 IMSEVDRDKDGRISYDEFRA 96 (114)
Q Consensus 77 ~~~~~d~~~~g~i~~~ef~~ 96 (114)
.|+.+-+++. +|..+|...
T Consensus 830 s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 830 AFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHcchh-HHHHHHHHh
Confidence 4444433332 566666655
No 150
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.63 E-value=11 Score=27.09 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=40.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHH
Q 048406 36 LYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRA 96 (114)
Q Consensus 36 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 96 (114)
...+|-.+.+- +|+|+-..-+..+-+. .+.+..+-++++..|.|.+|.++-+||.-
T Consensus 446 yde~fy~l~p~-~gk~sg~~ak~~mv~s----klpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSPV-NGKLSGRNAKKEMVKS----KLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhccccc-CceeccchhHHHHHhc----cCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 44556666543 4788776666666444 35567778999999999999999999963
No 151
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=66.62 E-value=20 Score=19.82 Aligned_cols=69 Identities=12% Similarity=0.045 Sum_probs=42.6
Q ss_pred CceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCC-CCcccHHHHHHHHHHh
Q 048406 13 RTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNM-GDDVTIAMKKEIMSEV 81 (114)
Q Consensus 13 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~-~~~~~~~~~~~~~~~~ 81 (114)
..||.+|++.+.....-+-+......+...+-.+.-...+-++-..++..+.. ..+.+-..+..+|..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 35677777777777666666666777777776666666677776666665521 1223344555555554
No 152
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=63.63 E-value=32 Score=21.08 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=40.1
Q ss_pred cCCCCceeHHHHHHHHHhh---chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 9 IDGNRTIVYIEFITATMQR---HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 9 ~~~~g~i~~~ef~~~~~~~---~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
+.....++-..|..++... ....+...+..+|..+-..+...|++++|..+|..+
T Consensus 13 ~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 13 KKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp TSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 5566778888888887654 233567788889998877777789999999999766
No 153
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.64 E-value=2 Score=33.60 Aligned_cols=58 Identities=22% Similarity=0.152 Sum_probs=48.3
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKG 62 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 62 (114)
+|...|.+.+|.|+..+....+.. .......+...|...|..+.|.+++.++.-.+-.
T Consensus 288 if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 288 IFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 577889999999999998887665 3456778999999999999999999987666543
No 154
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=60.91 E-value=43 Score=21.68 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=47.2
Q ss_pred cCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHH-HHHHHHhCCCCCcccHHHHHHHHHHhCCCCCC
Q 048406 9 IDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDE-LETAFKGYNMGDDVTIAMKKEIMSEVDRDKDG 87 (114)
Q Consensus 9 ~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e-~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g 87 (114)
.|-||.||..++...+...-..+. +. .+.+.--++.||+.+ |..++..++. .-.+.++-+.+....+.
T Consensus 8 sDFDGTITl~Ds~~~itdtf~~~e---~k---~l~~~vls~tiS~rd~~g~mf~~i~~---s~~Eile~llk~i~Idp-- 76 (220)
T COG4359 8 SDFDGTITLNDSNDYITDTFGPGE---WK---ALKDGVLSKTISFRDGFGRMFGSIHS---SLEEILEFLLKDIKIDP-- 76 (220)
T ss_pred ecCCCceEecchhHHHHhccCchH---HH---HHHHHHhhCceeHHHHHHHHHHhcCC---CHHHHHHHHHhhcccCc--
Confidence 467999999999998865532122 22 333444567888665 6667766643 11344444555454443
Q ss_pred ceeHHHHHHHHhcC
Q 048406 88 RISYDEFRAMMKSG 101 (114)
Q Consensus 88 ~i~~~ef~~~l~~~ 101 (114)
.|.||..+.+..
T Consensus 77 --~fKef~e~ike~ 88 (220)
T COG4359 77 --GFKEFVEWIKEH 88 (220)
T ss_pred --cHHHHHHHHHHc
Confidence 356777777654
No 155
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=59.78 E-value=13 Score=16.42 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=9.9
Q ss_pred CCceeHHHHHHHHHhh
Q 048406 12 NRTIVYIEFITATMQR 27 (114)
Q Consensus 12 ~g~i~~~ef~~~~~~~ 27 (114)
.|.|++++++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4667777776665443
No 156
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=57.04 E-value=26 Score=18.04 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccccccccc
Q 048406 48 TGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHLQANNNN 110 (114)
Q Consensus 48 ~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~ 110 (114)
+|.++..++...++. .+..++...-|+-++.+|+..+............
T Consensus 21 ~g~v~ls~l~~~~~~--------------~~~~f~~~~yG~~~l~~ll~~~~~~~~i~~~~~g 69 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKK--------------KYPDFDPRDYGFSSLSELLESLPDVVEIEERQHG 69 (74)
T ss_dssp TSSEEHHHHHHHHHH--------------HHTT--TCCTTSSSHHHHHHT-TTTEEEEEEECC
T ss_pred CceEEHHHHHHHHHH--------------HCCCCCccccCCCcHHHHHHhCCCeEEEeeeCCC
Confidence 567777777766633 2355677777888899988776665555433333
No 157
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=56.27 E-value=20 Score=18.35 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=16.6
Q ss_pred ceeHHHHHHHHHhhchhchHHHHH
Q 048406 14 TIVYIEFITATMQRHKLERFERLY 37 (114)
Q Consensus 14 ~i~~~ef~~~~~~~~~~~~~~~~~ 37 (114)
.|+.++|..++.......+.+.+.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~ 52 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLK 52 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHH
Confidence 478888888888876665555444
No 158
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=55.27 E-value=37 Score=19.23 Aligned_cols=66 Identities=3% Similarity=-0.019 Sum_probs=45.3
Q ss_pred eeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 15 IVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 15 i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
|.-.+|...+..+....+++++..+-..+...+...++..++...+..+- ....+.+++..+-..+
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt-~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVT-DELPTPEDIERVRARL 85 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHC-SS-S-HHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-cCCcCHHHHHHHHHHH
Confidence 55678888888887778888898888888777777678888888887662 2345667777666554
No 159
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=53.77 E-value=11 Score=19.59 Aligned_cols=22 Identities=18% Similarity=0.602 Sum_probs=18.8
Q ss_pred HhhcCCCCCcccHHHHHHHHHh
Q 048406 41 QHFDKDNTGYITVDELETAFKG 62 (114)
Q Consensus 41 ~~~d~~~~g~i~~~e~~~~l~~ 62 (114)
+++|...+.+|+++++.++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4678889999999999999864
No 160
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=53.61 E-value=38 Score=18.78 Aligned_cols=80 Identities=9% Similarity=-0.052 Sum_probs=42.9
Q ss_pred CCCceeHHHHHHHHHhhch--hchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCc
Q 048406 11 GNRTIVYIEFITATMQRHK--LERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGR 88 (114)
Q Consensus 11 ~~g~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~ 88 (114)
.||.++..|-..+-..+.. ..+......+...+........+..++...++... +......-++.++...-- ||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~~l~~L~~vA~A--DG~ 88 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF-DYEERLELVEALWEVAYA--DGE 88 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHh--cCC
Confidence 4788888886655443311 23344555566666555556677888877775431 111222334445555433 455
Q ss_pred eeHHH
Q 048406 89 ISYDE 93 (114)
Q Consensus 89 i~~~e 93 (114)
++-.|
T Consensus 89 ~~~~E 93 (104)
T cd07313 89 LDEYE 93 (104)
T ss_pred CCHHH
Confidence 55544
No 161
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=51.53 E-value=27 Score=16.53 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=16.4
Q ss_pred HHHHHHHhhcC--CCCCcccHHHHHHHHHh
Q 048406 35 RLYKAFQHFDK--DNTGYITVDELETAFKG 62 (114)
Q Consensus 35 ~~~~~f~~~d~--~~~g~i~~~e~~~~l~~ 62 (114)
.+..+|..+.. .....++..||+.++..
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34555665542 23457777777777753
No 162
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=48.90 E-value=32 Score=18.57 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCC
Q 048406 36 LYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDK 85 (114)
Q Consensus 36 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~ 85 (114)
+..+...-- +.|+||++++..+|... ..+.+.++.++..+...+
T Consensus 9 i~~Li~~gK--~~G~lT~~eI~~~L~~~----~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 9 IKKLIEKGK--KKGYLTYDEINDALPED----DLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp HHHHHHHHH--HHSS-BHHHHHHH-S-S-------HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHh--hcCcCCHHHHHHHcCcc----CCCHHHHHHHHHHHHHCC
Confidence 444444332 56899999999988543 255677777777775443
No 163
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=46.31 E-value=31 Score=18.05 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=18.9
Q ss_pred HHHHhCCCCCcccHHHHHHHHHHhCCC
Q 048406 58 TAFKGYNMGDDVTIAMKKEIMSEVDRD 84 (114)
Q Consensus 58 ~~l~~~g~~~~~~~~~~~~~~~~~d~~ 84 (114)
..++.+|+........+..+++.||.|
T Consensus 16 dam~~lG~~~~~v~~vl~~LL~lY~~n 42 (65)
T PF10440_consen 16 DAMRQLGFSKKQVRPVLKNLLKLYDGN 42 (65)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 355677776556667778888888754
No 164
>COG5562 Phage envelope protein [General function prediction only]
Probab=46.30 E-value=24 Score=21.29 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=20.3
Q ss_pred HhhcCCCCCcccHHHHHHHHHhCCC
Q 048406 41 QHFDKDNTGYITVDELETAFKGYNM 65 (114)
Q Consensus 41 ~~~d~~~~g~i~~~e~~~~l~~~g~ 65 (114)
..+.+...|..+++||+..+...|.
T Consensus 79 ~al~~~qsGqttF~ef~~~la~AGV 103 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSALAEAGV 103 (137)
T ss_pred HHHHHHhcCCccHHHHHHHHHhCCe
Confidence 4455668899999999999998875
No 165
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=45.85 E-value=49 Score=17.90 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=34.1
Q ss_pred CCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCcc
Q 048406 47 NTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 47 ~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 103 (114)
+.|.|+-++...+...- ...+.++.++..... -|...+.-|..++....+
T Consensus 26 ~~~Vit~e~~~~I~a~~-----T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p 75 (82)
T cd08330 26 GKKVITQEQYSEVRAEK-----TNQEKMRKLFSFVRS--WGASCKDIFYQILREEEP 75 (82)
T ss_pred HCCCCCHHHHHHHHcCC-----CcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCh
Confidence 55788888877665322 345556777776644 567888999999875543
No 166
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=45.48 E-value=64 Score=19.12 Aligned_cols=86 Identities=17% Similarity=0.289 Sum_probs=51.0
Q ss_pred CceeHHHHHHHHHhhc-------hhchHHHHHHHHHhhcCCC--CCcccHHHHHHHHHhC--------CCCCc-------
Q 048406 13 RTIVYIEFITATMQRH-------KLERFERLYKAFQHFDKDN--TGYITVDELETAFKGY--------NMGDD------- 68 (114)
Q Consensus 13 g~i~~~ef~~~~~~~~-------~~~~~~~~~~~f~~~d~~~--~g~i~~~e~~~~l~~~--------g~~~~------- 68 (114)
+.|-|..|+.+++... ..-....+..+|+....+. +..++..++..++..+ +....
T Consensus 13 n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~ 92 (127)
T PF09068_consen 13 NNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVD 92 (127)
T ss_dssp TT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----
T ss_pred hhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHH
Confidence 4566777777654321 2234466777787776543 4679999998888654 11111
Q ss_pred c-cHHHHHHHHHHhCCCCCCceeHHHHHHHH
Q 048406 69 V-TIAMKKEIMSEVDRDKDGRISYDEFRAMM 98 (114)
Q Consensus 69 ~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 98 (114)
. ..-.+..++..||++++|.|..-+|...+
T Consensus 93 ~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 93 LAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 1 12346778999999999999998887665
No 167
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=44.09 E-value=49 Score=17.36 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 32 RFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 32 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
.+..+..+|+..+ -.||.+|+..++++-
T Consensus 15 ~d~~m~~if~l~~----~~vs~~el~a~lrke 42 (68)
T PF07308_consen 15 KDDDMIEIFALAG----FEVSKAELSAWLRKE 42 (68)
T ss_pred ChHHHHHHHHHcC----CccCHHHHHHHHCCC
Confidence 3445555665543 356666666666554
No 168
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=43.56 E-value=49 Score=17.79 Aligned_cols=43 Identities=30% Similarity=0.451 Sum_probs=28.0
Q ss_pred cHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCC-CceeHHHHHHHH
Q 048406 52 TVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKD-GRISYDEFRAMM 98 (114)
Q Consensus 52 ~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l 98 (114)
..+++...|... +.+.+.+...+...+.+.- +.++.+|+..++
T Consensus 43 ~i~~le~~L~G~----~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALIGC----PYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHTTC----BSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 356677666332 4566777778877755433 678888887764
No 169
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=39.84 E-value=1.1e+02 Score=22.39 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=37.3
Q ss_pred CCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHH
Q 048406 12 NRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELE 57 (114)
Q Consensus 12 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~ 57 (114)
.-.|-|.+|.+++.+.+...+.-+...+=...|-..+++||.=||-
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFD 233 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFD 233 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhh
Confidence 4568899999999998877777777777788899999999966654
No 170
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=39.46 E-value=50 Score=16.14 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=20.3
Q ss_pred CCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCC
Q 048406 47 NTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRD 84 (114)
Q Consensus 47 ~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~ 84 (114)
..|.|+..++++.+ | .+...+-.+++.+|..
T Consensus 7 ~~~~itv~~~rd~l---g----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 7 KNGEITVAEFRDLL---G----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TTSSBEHHHHHHHH---T----S-HHHHHHHHHHHHHT
T ss_pred cCCcCcHHHHHHHH---C----ccHHHHHHHHHHHhcc
Confidence 36899999999887 3 3444445566666654
No 171
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=39.34 E-value=41 Score=26.06 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=40.2
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHH---------HHHHHHhhcCCCC-----------------------Cc
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFER---------LYKAFQHFDKDNT-----------------------GY 50 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~---------~~~~f~~~d~~~~-----------------------g~ 50 (114)
++...|-+.++..+|.+|......+.......+ ...+|..+|.+++ |.
T Consensus 442 ~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~~~ 521 (975)
T KOG2419|consen 442 ILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSFGV 521 (975)
T ss_pred cccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccccCe
Confidence 456678889999999999887666643322222 4456777777777 77
Q ss_pred ccHHHHHHHHH
Q 048406 51 ITVDELETAFK 61 (114)
Q Consensus 51 i~~~e~~~~l~ 61 (114)
++.+|...+++
T Consensus 522 vtVDe~v~ll~ 532 (975)
T KOG2419|consen 522 VTVDELVALLA 532 (975)
T ss_pred eEHHHHHHHHH
Confidence 77777766664
No 172
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=39.01 E-value=31 Score=22.03 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=35.0
Q ss_pred HHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCC
Q 048406 18 IEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNM 65 (114)
Q Consensus 18 ~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~ 65 (114)
+-|...+.........+.++.+|..||+.+--..+-+++.++|...|+
T Consensus 39 e~fQAGLSW~tVL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 39 EGFQAGLSWLTVLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred HHHhccchHHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch
Confidence 333333333333345678999999999999889999999999987764
No 173
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=38.49 E-value=1e+02 Score=19.46 Aligned_cols=13 Identities=8% Similarity=0.483 Sum_probs=5.5
Q ss_pred ceeHHHHHHHHhc
Q 048406 88 RISYDEFRAMMKS 100 (114)
Q Consensus 88 ~i~~~ef~~~l~~ 100 (114)
++++++|......
T Consensus 151 kmt~~~Fi~~~~~ 163 (187)
T smart00222 151 KMTLEDFIKNVRG 163 (187)
T ss_pred CCCHHHHHHHHhc
Confidence 3444444444433
No 174
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=38.41 E-value=54 Score=16.23 Aligned_cols=16 Identities=13% Similarity=-0.024 Sum_probs=8.0
Q ss_pred CCceeHHHHHHHHHhh
Q 048406 12 NRTIVYIEFITATMQR 27 (114)
Q Consensus 12 ~g~i~~~ef~~~~~~~ 27 (114)
+|.|+.+||-.-+...
T Consensus 21 ~GrL~~~Ef~~R~~~a 36 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAA 36 (53)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4555555555444433
No 175
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=38.14 E-value=56 Score=22.30 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCccc
Q 048406 34 ERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVT 70 (114)
Q Consensus 34 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~ 70 (114)
-.+.-+|..+...+.|.+++.+..++-+++|+.++..
T Consensus 178 GTLsYifne~s~gk~~~~sfsdvVk~AKklGYTEPDP 214 (364)
T KOG0455|consen 178 GTLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEPDP 214 (364)
T ss_pred ccHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCCCc
Confidence 4456677888777889999999999999999875433
No 176
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.47 E-value=35 Score=29.12 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCC---cccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 32 RFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGD---DVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 32 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
..+.+..+|..+|++..|.|...++..+++.+.-+. +..+. +.+-...-...+|.|++.+-+-.+.+..
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 347788899999999999999999999998773210 11111 1122222334567788888766665543
No 177
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=37.20 E-value=54 Score=20.45 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 32 RFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 32 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
+...+..+++-+-.++...++.++|...+ |.+...+.++++.....+
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c---GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKAC---GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTT---TTT----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHc---CCCeEECHHHHHHHHHHH
Confidence 34556666666655555678888877665 666667777666655554
No 178
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=36.07 E-value=59 Score=19.98 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 34 ERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 34 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
+.+..-...+|..+.+++|.+|+|.++-.+
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 344445567788888889999999988655
No 179
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=35.47 E-value=1.2e+02 Score=19.21 Aligned_cols=11 Identities=9% Similarity=0.513 Sum_probs=4.5
Q ss_pred eeHHHHHHHHh
Q 048406 89 ISYDEFRAMMK 99 (114)
Q Consensus 89 i~~~ef~~~l~ 99 (114)
++.++|...+.
T Consensus 150 mt~~~Fi~~~~ 160 (185)
T cd00171 150 MTLEDFIKNLR 160 (185)
T ss_pred CCHHHHHHHHh
Confidence 44444444333
No 180
>PLN02228 Phosphoinositide phospholipase C
Probab=35.00 E-value=1.5e+02 Score=22.53 Aligned_cols=50 Identities=8% Similarity=0.197 Sum_probs=36.6
Q ss_pred CCceeHHHHHHHHHhhch--hchHHHHHHHHHhhcCC----CCCcccHHHHHHHHH
Q 048406 12 NRTIVYIEFITATMQRHK--LERFERLYKAFQHFDKD----NTGYITVDELETAFK 61 (114)
Q Consensus 12 ~g~i~~~ef~~~~~~~~~--~~~~~~~~~~f~~~d~~----~~g~i~~~e~~~~l~ 61 (114)
++.++.++|..++..... ......+..++..+... ..|.++.+.|...|.
T Consensus 36 ~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 36 NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 368999999999977632 23456677788877543 346899999988884
No 181
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=34.68 E-value=1.2e+02 Score=22.52 Aligned_cols=50 Identities=10% Similarity=0.019 Sum_probs=37.1
Q ss_pred ceeHHHHHHHHHh-h--chhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 14 TIVYIEFITATMQ-R--HKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 14 ~i~~~ef~~~~~~-~--~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
..|..||...+.. + .+..+...+..+|+..|.++=-.|++.+|+.++..+
T Consensus 105 RaTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 105 RATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred EeeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 3567777766542 2 345667788888999988877788899998888766
No 182
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=34.36 E-value=98 Score=18.03 Aligned_cols=44 Identities=7% Similarity=0.098 Sum_probs=33.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhC
Q 048406 37 YKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVD 82 (114)
Q Consensus 37 ~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d 82 (114)
...|-+++..++...+..+++.+|...|. ....+.++.++..+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~--E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGA--EIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCc--ccCHHHHHHHHHHhc
Confidence 44667777778888889999999988875 466677777777764
No 183
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=34.21 E-value=36 Score=15.90 Aligned_cols=19 Identities=16% Similarity=0.379 Sum_probs=14.5
Q ss_pred cCCCCCcccHHHHHHHHHh
Q 048406 44 DKDNTGYITVDELETAFKG 62 (114)
Q Consensus 44 d~~~~g~i~~~e~~~~l~~ 62 (114)
+....|.++.++++++++.
T Consensus 7 ~g~~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISS 25 (45)
T ss_pred CCeEECCcCHHHHHHHHHc
Confidence 4556788899998888764
No 184
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=32.60 E-value=93 Score=17.22 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=32.8
Q ss_pred CCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccc
Q 048406 47 NTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHL 104 (114)
Q Consensus 47 ~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 104 (114)
++|.|+-++...+... +.+.+.+++++...- ..|....+-|...+......
T Consensus 26 ~n~~it~E~y~~V~a~-----~T~qdkmRkLld~v~--akG~~~k~~F~~iL~e~~~~ 76 (85)
T cd08324 26 KNDYFSTEDAEIVCAC-----PTQPDKVRKILDLVQ--SKGEEVSEYFLYLLQQLADA 76 (85)
T ss_pred ccCCccHHHHHHHHhC-----CCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHh
Confidence 6789999987766532 244566677776643 34556667777777665443
No 185
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=32.51 E-value=93 Score=18.15 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=4.9
Q ss_pred eeHHHHHHHH
Q 048406 89 ISYDEFRAMM 98 (114)
Q Consensus 89 i~~~ef~~~l 98 (114)
+-.+||+.++
T Consensus 107 ~liDeFVe~~ 116 (117)
T PF03556_consen 107 SLIDEFVEWL 116 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4455555443
No 186
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=31.78 E-value=2.3e+02 Score=21.40 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=40.5
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhCCCCCc-ccHHHHHHHHHHhCC----C-CCCceeHHHHHHHHhcC
Q 048406 39 AFQHFDKDNTGYITVDELETAFKGYNMGDD-VTIAMKKEIMSEVDR----D-KDGRISYDEFRAMMKSG 101 (114)
Q Consensus 39 ~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~-~~~~~~~~~~~~~d~----~-~~g~i~~~ef~~~l~~~ 101 (114)
+|..+....++.+++--|..+|+..|+... .-...+-.-++..+. + ..+.++.+.|..+....
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sS 159 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSS 159 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccc
Confidence 466776666799999999999999987521 112222333444442 2 23578999898877553
No 187
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=30.95 E-value=2.1e+02 Score=23.30 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=0.0
Q ss_pred ccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCC-----cccHHHHHHHHHhCCCC-CcccHHHHHHHHHHh
Q 048406 8 DIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTG-----YITVDELETAFKGYNMG-DDVTIAMKKEIMSEV 81 (114)
Q Consensus 8 D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g-----~i~~~e~~~~l~~~g~~-~~~~~~~~~~~~~~~ 81 (114)
|.-..+.++|++|..+..++--......+...-..+--+..+ .|++.+|.++|-.--.. .......++.++..+
T Consensus 190 d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F 269 (1267)
T KOG1264|consen 190 DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKF 269 (1267)
T ss_pred hhhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHH
Q ss_pred CCCC-----CCceeHHHHHHHHhcC
Q 048406 82 DRDK-----DGRISYDEFRAMMKSG 101 (114)
Q Consensus 82 d~~~-----~g~i~~~ef~~~l~~~ 101 (114)
-.|- .-.+.+.||+.+|-..
T Consensus 270 ~~D~~re~~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 270 IDDTMRETAEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred HhhhhhhccCcceeHHHHHHHHhhc
No 188
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=30.50 E-value=2.1e+02 Score=20.53 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=42.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 38 KAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 38 ~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
.....+|+.+.|.++.--.+-++..+-- ....+.++.+|.... +..|.+.+-.|..+++...
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~--gk~~dklryIfs~is-ds~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCG--GKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhcc--chHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHH
Confidence 3345678999999998877777765521 133456677888775 6667777777777776543
No 189
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=30.26 E-value=1e+02 Score=17.11 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=34.4
Q ss_pred CCcccHHHHHHHHHhCCCCCcccHHHH---HHHHHHhCCCCCCceeHHHHHHHHhcCcccc
Q 048406 48 TGYITVDELETAFKGYNMGDDVTIAMK---KEIMSEVDRDKDGRISYDEFRAMMKSGTHLQ 105 (114)
Q Consensus 48 ~g~i~~~e~~~~l~~~g~~~~~~~~~~---~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 105 (114)
....+.+++..++...+.+ . .+-+ ...++..+......++-+++..++.+.+...
T Consensus 33 ~~~~~~~~l~~~~~~~~~~--~-~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Li 90 (105)
T cd02977 33 KEPPTKEELKELLAKLGLG--V-EDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLI 90 (105)
T ss_pred cCCCCHHHHHHHHHhcCCC--H-HHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCee
Confidence 4567788888888877632 1 1111 1344455444335688999999998877653
No 190
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=29.94 E-value=15 Score=16.04 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=10.4
Q ss_pred HHHHHhCCCCCCceeHH
Q 048406 76 EIMSEVDRDKDGRISYD 92 (114)
Q Consensus 76 ~~~~~~d~~~~g~i~~~ 92 (114)
.++.+-|+|++-+|+.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 45566677777666543
No 191
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=28.88 E-value=1.1e+02 Score=17.07 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCC
Q 048406 33 FERLYKAFQHFDKDNTGYITVDELETAFKGYNM 65 (114)
Q Consensus 33 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~ 65 (114)
.+.+...|..+- ..|+..+++.+.+.+|+
T Consensus 3 ~~~l~~~f~~i~----~~V~~~~Wk~laR~LGL 31 (96)
T cd08315 3 QETLRRSFDHFI----KEVPFDSWNRLMRQLGL 31 (96)
T ss_pred HhHHHHHHHHHH----HHCCHHHHHHHHHHcCC
Confidence 344555555553 35667778888887774
No 192
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=28.82 E-value=1.5e+02 Score=21.96 Aligned_cols=20 Identities=25% Similarity=-0.024 Sum_probs=11.0
Q ss_pred hcccCCCCceeHHHHHHHHH
Q 048406 6 EADIDGNRTIVYIEFITATM 25 (114)
Q Consensus 6 ~~D~~~~g~i~~~ef~~~~~ 25 (114)
.+|-|.+|.|+.+|--.+++
T Consensus 76 qmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 76 QMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred hcccccCCCcccccchHHHH
Confidence 45555666666655555444
No 193
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=28.66 E-value=1.1e+02 Score=19.94 Aligned_cols=16 Identities=50% Similarity=0.544 Sum_probs=7.3
Q ss_pred HHHHHHhhcCCCCCcc
Q 048406 36 LYKAFQHFDKDNTGYI 51 (114)
Q Consensus 36 ~~~~f~~~d~~~~g~i 51 (114)
+...-+.||++..|.|
T Consensus 211 LI~F~qSfDPdSte~I 226 (246)
T PF10897_consen 211 LIKFVQSFDPDSTEPI 226 (246)
T ss_pred HHHHHHhcCCCCcCce
Confidence 3333445555554433
No 194
>PF11269 DUF3069: Protein of unknown function (DUF3069); InterPro: IPR021422 This family of proteins with unknown function appear to be restricted to Gammaproteobacteria. ; PDB: 2PV4_A.
Probab=28.63 E-value=84 Score=18.56 Aligned_cols=12 Identities=8% Similarity=-0.028 Sum_probs=5.7
Q ss_pred CCCcccHHHHHH
Q 048406 47 NTGYITVDELET 58 (114)
Q Consensus 47 ~~g~i~~~e~~~ 58 (114)
..+.+.-+|++.
T Consensus 74 ~~~~~~~~EY~~ 85 (121)
T PF11269_consen 74 DMEEEEEQEYRA 85 (121)
T ss_dssp TTTTS-HHHHHH
T ss_pred chhHHHHHHHHH
Confidence 445555555554
No 195
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=27.79 E-value=66 Score=15.79 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=19.4
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHH
Q 048406 40 FQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSE 80 (114)
Q Consensus 40 f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~ 80 (114)
|..+...+++.+|.+|+..-+.. .++.....++++++.
T Consensus 12 ~dii~~~g~~~ls~~eia~~l~~---~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 12 PDIIHNAGGGPLSLSEIAARLPT---SNPSAPPMLDRIMRL 49 (51)
T ss_dssp HHHHHHHTTS-BEHHHHHHTSTC---T-TTHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHcCC---CCcchHHHHHHHHHH
Confidence 44444444678888887665532 122334455665543
No 196
>PLN02230 phosphoinositide phospholipase C 4
Probab=27.71 E-value=91 Score=23.86 Aligned_cols=32 Identities=9% Similarity=0.275 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 70 TIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 70 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
...++..+|..+..++ +.++.++|..+|...+
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 4578899999996444 7899999999998877
No 197
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.55 E-value=35 Score=24.94 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=37.1
Q ss_pred CCCCceeHHHHHHHHHhhchh----chHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 048406 10 DGNRTIVYIEFITATMQRHKL----ERFERLYKAFQHFDKDNTGYITVDELETAFK 61 (114)
Q Consensus 10 ~~~g~i~~~ef~~~~~~~~~~----~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 61 (114)
.|+-..+..||+.+....+.. ...+.++.+-+.+|.+.+|-|..+|=..+++
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHH
Confidence 455566667776654433222 2347788899999999999999999777776
No 198
>PRK10026 arsenate reductase; Provisional
Probab=27.53 E-value=1.1e+02 Score=18.63 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=31.7
Q ss_pred CCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccc
Q 048406 48 TGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHL 104 (114)
Q Consensus 48 ~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 104 (114)
...++.+|+..++...|.+...--.--...++....+.+ .++.++.+..|...+..
T Consensus 36 ~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~L 91 (141)
T PRK10026 36 ETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPIL 91 (141)
T ss_pred CCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCccc
Confidence 356788888888888764200000011234555544332 46778888887776544
No 199
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=27.47 E-value=1.9e+02 Score=22.84 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCcc
Q 048406 32 RFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTH 103 (114)
Q Consensus 32 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~ 103 (114)
.......+|+...+.+.-.+..+.+... ...++++..+..++...+..|+++.|.......+.
T Consensus 402 a~~aA~~iF~nv~~p~~~~i~ld~~~~f---------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ 464 (714)
T KOG4629|consen 402 AKIAARKIFKNVAKPGVILIDLDDLLRF---------MGDEEAERAFSLFEGASDENITRSSFKEWIVNIYR 464 (714)
T ss_pred HHHHHHHHHhccCCCCccchhhhhhhhc---------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHH
Confidence 3455667777776666556666654433 33566788888888766666999999887765543
No 200
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=27.41 E-value=1.8e+02 Score=19.28 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=27.1
Q ss_pred cCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 44 DKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 44 d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
=.+++|.+.+..+...+.++ +..++..++..+-+.+
T Consensus 161 vG~gegQVpL~kL~~~l~KL--p~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 161 VGNGEGQVPLRKLQKTLMKL--PRNLTKAEVDAVNKRL 196 (224)
T ss_pred ecCCCCceeHHHHHHHHHhC--CccCCHHHHHHHHHHH
Confidence 36789999999999999888 3457766666655544
No 201
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.63 E-value=43 Score=23.99 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=44.9
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhc-hhchHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRH-KLERFERLYKAFQHFDKDNTGYITVDELETAF 60 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 60 (114)
..|+.+|+.+.|-|+-+-+...+...+ .....+.+.-+=+.+|+.+-|.|-.+++...+
T Consensus 313 R~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 313 RNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred hhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 368899999999999999988887775 33445566666677888888888887754444
No 202
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=26.41 E-value=1.2e+02 Score=16.66 Aligned_cols=48 Identities=8% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 47 NTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 47 ~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
+.|.+|.++...+-.. +...+.++.++..+-. -|.-.|..|+.++...
T Consensus 31 ~~gvlt~~~~~~I~~~-----~t~~~k~~~Lld~L~~--RG~~AF~~F~~aL~~~ 78 (90)
T cd08332 31 QKDILTDSMAESIMAK-----PTSFSQNVALLNLLPK--RGPRAFSAFCEALRET 78 (90)
T ss_pred HcCCCCHHHHHHHHcC-----CCcHHHHHHHHHHHHH--hChhHHHHHHHHHHhc
Confidence 4588998886665532 1344555667776643 3567899999999764
No 203
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.26 E-value=72 Score=19.56 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=32.9
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 38 KAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 38 ~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
-+|.... -||.++-.|...+...+...-.++..++..++...-.-+.-.+++..|..-+.+.-
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~L 96 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHL 96 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4566665 44677776654333322111124445555555555444445677777776666443
No 204
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=26.20 E-value=2.3e+02 Score=20.52 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=37.7
Q ss_pred CCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHh
Q 048406 12 NRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKG 62 (114)
Q Consensus 12 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 62 (114)
+..++++++...........-++....+....+.+++|..+.+++.+.+..
T Consensus 72 ~~~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~ 122 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVV 122 (427)
T ss_pred CccchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHH
Confidence 345666666655554444456677888899999999999999998887764
No 205
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=26.01 E-value=1.2e+02 Score=16.32 Aligned_cols=22 Identities=9% Similarity=-0.015 Sum_probs=17.3
Q ss_pred cccCCCCceeHHHHHHHHHhhc
Q 048406 7 ADIDGNRTIVYIEFITATMQRH 28 (114)
Q Consensus 7 ~D~~~~g~i~~~ef~~~~~~~~ 28 (114)
+-.|..|.|++..|++.+....
T Consensus 11 ~~~n~~G~iTl~gfLa~W~l~T 32 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWSLTT 32 (76)
T ss_pred eEEcCCCcCcHHHHHHHHHHHH
Confidence 3457889999999999876653
No 206
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=25.99 E-value=2.4e+02 Score=21.28 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=52.0
Q ss_pred cchhhcccCCCCceeHHHHHHHHHhhch---hchHHHHHHHHHhhcC-----CCCCcccHHHHHHHHHhC-CC-----CC
Q 048406 2 LTKTEADIDGNRTIVYIEFITATMQRHK---LERFERLYKAFQHFDK-----DNTGYITVDELETAFKGY-NM-----GD 67 (114)
Q Consensus 2 ~~~~~~D~~~~g~i~~~ef~~~~~~~~~---~~~~~~~~~~f~~~d~-----~~~g~i~~~e~~~~l~~~-g~-----~~ 67 (114)
++|..+-...++.+++..|..++....- .+....+....+.+|. .+-+.++.+.|++.+... +. ..
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrk 169 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRK 169 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhc
Confidence 3555555555799999999999988743 3344555555555553 234588888888876421 10 00
Q ss_pred ---ccc----HHHHHHHHHHhCCCCCCce
Q 048406 68 ---DVT----IAMKKEIMSEVDRDKDGRI 89 (114)
Q Consensus 68 ---~~~----~~~~~~~~~~~d~~~~g~i 89 (114)
..+ ...+..+|+..-....|.+
T Consensus 170 qmVIPdw~~Fts~I~tIFEscke~seG~v 198 (622)
T KOG0506|consen 170 QMVIPDWEEFTSHIDTIFESCKESSEGKV 198 (622)
T ss_pred CccCCcHHHHHHHHHHHHHHHHhcCCccH
Confidence 011 2346667777665555553
No 207
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=25.29 E-value=86 Score=19.52 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=25.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhCCCC---CcccHHHHHHHHHHh
Q 048406 38 KAFQHFDKDNTGYITVDELETAFKGYNMG---DDVTIAMKKEIMSEV 81 (114)
Q Consensus 38 ~~f~~~d~~~~g~i~~~e~~~~l~~~g~~---~~~~~~~~~~~~~~~ 81 (114)
..|..+...+-+.|++++|+.+|..++.. .....++++.|-..+
T Consensus 61 i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 61 IVFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQLL 107 (180)
T ss_pred eeeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 34544545556688899998888776422 123344555554443
No 208
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.77 E-value=76 Score=13.64 Aligned_cols=14 Identities=29% Similarity=0.321 Sum_probs=9.3
Q ss_pred CCcccHHHHHHHHH
Q 048406 48 TGYITVDELETAFK 61 (114)
Q Consensus 48 ~g~i~~~e~~~~l~ 61 (114)
.|.||-+||...-.
T Consensus 14 ~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 14 KGEISEEEYEQKKA 27 (31)
T ss_pred cCCCCHHHHHHHHH
Confidence 47777777765543
No 209
>smart00021 DAX Domain present in Dishevelled and axin. Domain of unknown function.
Probab=24.54 E-value=22 Score=19.60 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=11.9
Q ss_pred CCCcccHHHHHHHHHhCC
Q 048406 47 NTGYITVDELETAFKGYN 64 (114)
Q Consensus 47 ~~g~i~~~e~~~~l~~~g 64 (114)
..+.|++.+|+..+.+-+
T Consensus 24 ~~~~iTLgdFK~~l~k~~ 41 (83)
T smart00021 24 PAERVTLGDFKEVLTKKN 41 (83)
T ss_pred CcCceEHHHHHHhhccCC
Confidence 446677777777775543
No 210
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.51 E-value=1.4e+02 Score=17.84 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=26.8
Q ss_pred CCCceeHHHHHHHHHhh---chhchHHHHHHHHHhhcCCCCCccc
Q 048406 11 GNRTIVYIEFITATMQR---HKLERFERLYKAFQHFDKDNTGYIT 52 (114)
Q Consensus 11 ~~g~i~~~ef~~~~~~~---~~~~~~~~~~~~f~~~d~~~~g~i~ 52 (114)
..|.||.+|=.+++... ....-...+.++|+.=|+.+-|..-
T Consensus 52 ~~~~iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFY 96 (132)
T KOG3442|consen 52 SNGKITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFY 96 (132)
T ss_pred ccccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCccee
Confidence 34778888877776543 2223346677777777877666443
No 211
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.41 E-value=1.3e+02 Score=16.30 Aligned_cols=17 Identities=0% Similarity=0.065 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHhCCCC
Q 048406 50 YITVDELETAFKGYNMG 66 (114)
Q Consensus 50 ~i~~~e~~~~l~~~g~~ 66 (114)
.|++..++++++.+|+.
T Consensus 8 ~VP~~~wk~F~R~LGLs 24 (77)
T cd08815 8 AVPARRWKEFVRTLGLR 24 (77)
T ss_pred cCChHHHHHHHHHcCCc
Confidence 57888888888888853
No 212
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.32 E-value=2.9e+02 Score=20.30 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=37.4
Q ss_pred hcccCCCCceeHHHHHHHHHhh-chhchHHHHHHHHHhhcCCCC-CcccHHHHHHHHHhCCCC
Q 048406 6 EADIDGNRTIVYIEFITATMQR-HKLERFERLYKAFQHFDKDNT-GYITVDELETAFKGYNMG 66 (114)
Q Consensus 6 ~~D~~~~g~i~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~-g~i~~~e~~~~l~~~g~~ 66 (114)
.+|+++|+ +.+.++++.+. +.+.++..+..+-++++...| -+|-..=+.-+...+|.-
T Consensus 241 ~~Dk~gD~---hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlA 300 (436)
T COG2256 241 RFDKDGDA---HYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLA 300 (436)
T ss_pred ccCCCcch---HHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCC
Confidence 46777776 66777777654 777888888888888886542 244444444444555543
No 213
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=24.31 E-value=1.7e+02 Score=17.54 Aligned_cols=51 Identities=8% Similarity=0.160 Sum_probs=32.8
Q ss_pred CCCcccHHHHHHHHHhCC----CC---CcccHHHHHHHHHHhCCCCCC-ceeHHHHHHH
Q 048406 47 NTGYITVDELETAFKGYN----MG---DDVTIAMKKEIMSEVDRDKDG-RISYDEFRAM 97 (114)
Q Consensus 47 ~~g~i~~~e~~~~l~~~g----~~---~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 97 (114)
++..||.+||.+++..-. ++ .....++++.+...+...+.+ .++..|-+..
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 567888888888876431 00 234567777787777765544 4777776553
No 214
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=23.38 E-value=2.2e+02 Score=18.49 Aligned_cols=38 Identities=8% Similarity=-0.003 Sum_probs=19.1
Q ss_pred CcccHHHHHHHHHhCC-CCCcccHHHHHHHHHHhCCCCC
Q 048406 49 GYITVDELETAFKGYN-MGDDVTIAMKKEIMSEVDRDKD 86 (114)
Q Consensus 49 g~i~~~e~~~~l~~~g-~~~~~~~~~~~~~~~~~d~~~~ 86 (114)
|.|++.|+...+++.. ....++.+++....+.+..-+.
T Consensus 112 Gii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~ 150 (223)
T PF04157_consen 112 GIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGL 150 (223)
T ss_dssp SEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTS
T ss_pred CEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCC
Confidence 5666666666665543 1133455555555555544443
No 215
>PHA02105 hypothetical protein
Probab=22.81 E-value=1.2e+02 Score=15.42 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHhCCCCC-cccHHHHHHHHHHhCCCCC--CceeHHHHHHHHhcCc
Q 048406 50 YITVDELETAFKGYNMGD-DVTIAMKKEIMSEVDRDKD--GRISYDEFRAMMKSGT 102 (114)
Q Consensus 50 ~i~~~e~~~~l~~~g~~~-~~~~~~~~~~~~~~d~~~~--g~i~~~ef~~~l~~~~ 102 (114)
+++.++|+.++..-...+ +...+.+..+-..+..-.- -.++|+||...+.=.+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ip 59 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPFIP 59 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccccc
Confidence 456777777775443221 2333333333333333332 3579999887765433
No 216
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=22.76 E-value=89 Score=13.76 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=14.5
Q ss_pred cccHHHHHHHHHhCCCCCcccH
Q 048406 50 YITVDELETAFKGYNMGDDVTI 71 (114)
Q Consensus 50 ~i~~~e~~~~l~~~g~~~~~~~ 71 (114)
..+..|++..++..|.+..-+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~~G~K 24 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTSGKK 24 (35)
T ss_dssp TSHHHHHHHHHHHTTS-STSSH
T ss_pred cCcHHHHHHHHHHCCCCCCCCH
Confidence 3567788888888877544444
No 217
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=22.74 E-value=1.6e+02 Score=16.74 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=32.2
Q ss_pred CCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccc
Q 048406 48 TGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHL 104 (114)
Q Consensus 48 ~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 104 (114)
....+.+++..++...|.+...--..-...++....+. ..++-++...++.+.+..
T Consensus 34 ~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~L 89 (115)
T cd03032 34 KQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSL 89 (115)
T ss_pred CCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhh
Confidence 35677888888888775321100001123455544333 357778888888776654
No 218
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=22.55 E-value=89 Score=13.64 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=15.0
Q ss_pred cccHHHHHHHHHhCCCCCcccH
Q 048406 50 YITVDELETAFKGYNMGDDVTI 71 (114)
Q Consensus 50 ~i~~~e~~~~l~~~g~~~~~~~ 71 (114)
.++..+++..++..|.+..-..
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~G~K 24 (35)
T smart00513 3 KLKVSELKDELKKRGLSTSGTK 24 (35)
T ss_pred cCcHHHHHHHHHHcCCCCCCCH
Confidence 4567888888888877543333
No 219
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=22.42 E-value=1.7e+02 Score=17.38 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=30.4
Q ss_pred CCcccHHHHHHHHHhCCCCC-cccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccc
Q 048406 48 TGYITVDELETAFKGYNMGD-DVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHL 104 (114)
Q Consensus 48 ~g~i~~~e~~~~l~~~g~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 104 (114)
...++.+++..++...|.+. .+-+ .-...++..+.+. ..++-++...++...+..
T Consensus 34 ~~~~s~~eL~~~l~~~~~~~~~lin-~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~L 89 (132)
T PRK13344 34 KEPLTKEEILAILTKTENGIESIVS-SKNRYAKALDCDI-EELSVNEVIDLIQENPRI 89 (132)
T ss_pred CCCCCHHHHHHHHHHhCCCHHHhhc-cCcHHHHhCCcch-hcCCHHHHHHHHHhCccc
Confidence 35678888888888775331 1100 1123444444332 356777777777766544
No 220
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=22.36 E-value=20 Score=21.05 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=3.6
Q ss_pred CCcccHHHHH
Q 048406 48 TGYITVDELE 57 (114)
Q Consensus 48 ~g~i~~~e~~ 57 (114)
||.|+.+|..
T Consensus 37 DG~v~~~E~~ 46 (140)
T PF05099_consen 37 DGEVDPEEIE 46 (140)
T ss_dssp TSS--CHHHH
T ss_pred CCCCCHHHHH
Confidence 3444444443
No 221
>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]
Probab=22.35 E-value=68 Score=24.41 Aligned_cols=58 Identities=14% Similarity=0.314 Sum_probs=38.3
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCC--ceeHHHHHHHHhcCcc
Q 048406 39 AFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDG--RISYDEFRAMMKSGTH 103 (114)
Q Consensus 39 ~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g--~i~~~ef~~~l~~~~~ 103 (114)
+|...|.++.-.++...+.+.|.++.- -+.+.+ .+ ...|... -|+|.|...++.+...
T Consensus 591 lFHqvtedg~p~lDlaHvl~CLNKLDA---G~~EkI--~L--vSrDE~t~IIvSY~ELK~~le~t~~ 650 (655)
T KOG3741|consen 591 LFHQVTEDGKPWLDLAHVLQCLNKLDA---GIQEKI--LL--VSRDELTCIIVSYKELKTILEKTFR 650 (655)
T ss_pred hheEeccCCChhhhHHHHHHHhhhccc---cchhhe--eE--eccCCCcEEEEEHHHHHHHHHHhhc
Confidence 566778888888889998888888732 222222 22 3333333 4799999988877654
No 222
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=22.26 E-value=1.5e+02 Score=16.09 Aligned_cols=17 Identities=0% Similarity=0.048 Sum_probs=13.2
Q ss_pred cccHHHHHHHHHhCCCC
Q 048406 50 YITVDELETAFKGYNMG 66 (114)
Q Consensus 50 ~i~~~e~~~~l~~~g~~ 66 (114)
.++..+++++.+.+|+.
T Consensus 8 ~v~~~~wk~~~R~LGls 24 (80)
T cd08313 8 EVPPRRWKEFVRRLGLS 24 (80)
T ss_pred hCCHHHHHHHHHHcCCC
Confidence 56778888888888753
No 223
>PLN02859 glutamine-tRNA ligase
Probab=21.77 E-value=4.3e+02 Score=21.26 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHh
Q 048406 31 ERFERLYKAFQHFDKDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEV 81 (114)
Q Consensus 31 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~ 81 (114)
.+...+..+++-+...+...++..+|...+ |.+...+.++++.....+
T Consensus 84 kT~~Ql~AA~kYl~~~~~~~~d~~~Fek~C---GVGV~VT~EqI~~~V~~~ 131 (788)
T PLN02859 84 KTPAQLEAAFSFFSSTGPESFDLNKFEEAC---GVGVVVSPEDIEAAVNEV 131 (788)
T ss_pred CCHHHHHHHHHHHHhCCCCccCHHHHHHhC---CCCEEECHHHHHHHHHHH
Confidence 345667777887766665677777777665 666667777666655544
No 224
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=21.71 E-value=1.6e+02 Score=16.21 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=32.0
Q ss_pred CCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcC
Q 048406 47 NTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSG 101 (114)
Q Consensus 47 ~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 101 (114)
..|.++.++...+-..- ...+.++.++...-+ .|.=.|.-|..++...
T Consensus 25 ~~gvlt~~~~e~I~~~~-----t~~~qa~~Lld~L~t--rG~~Af~~F~~aL~~~ 72 (86)
T cd08323 25 SDGVLTLDEEEKVKSKA-----TQKEKAVMLINMILT--KDNHAYVSFYNALLHE 72 (86)
T ss_pred hcCCCCHHHHHHHHcCC-----ChHHHHHHHHHHHHh--cCHHHHHHHHHHHHhc
Confidence 46789988877665422 335555666666644 3567888999998754
No 225
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=21.13 E-value=1.6e+02 Score=16.10 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=31.0
Q ss_pred ceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhCCC
Q 048406 14 TIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGYNM 65 (114)
Q Consensus 14 ~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~g~ 65 (114)
.++..+|..++..+.....+..-..+.+..-+... .++.++..+++..+..
T Consensus 4 ~m~~~~f~~~~~~lk~~~fd~dkl~~l~~~~~~~~-~~T~~Qv~~il~~f~f 54 (95)
T PF14771_consen 4 PMSDNDFEQFLEQLKKESFDSDKLKVLEAAAKTNN-CFTCAQVKQILSLFSF 54 (95)
T ss_pred CCCHHHHHHHHHHHHcCCCcHHHHHHHHHHHhcCC-ceeHHHHHHHHHHcCC
Confidence 45556666666666444444444444444433332 7999999999987753
No 226
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=20.96 E-value=1.6e+02 Score=16.03 Aligned_cols=49 Identities=12% Similarity=0.289 Sum_probs=32.4
Q ss_pred CCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCc
Q 048406 47 NTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGT 102 (114)
Q Consensus 47 ~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 102 (114)
++|.++.++...+-. . ....+.++.++...-. -|.-.|..|+.++....
T Consensus 27 ~~~Vlt~~~~e~I~~-~----~tr~~q~~~LLd~L~~--RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 27 SRGVFTPDMIEEIQA-A----GSRRDQARQLLIDLET--RGKQAFPAFLSALRETG 75 (84)
T ss_pred hcCCCCHHHHHHHHc-C----CCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcC
Confidence 567888887766653 2 1335556667766644 35578899999997643
No 227
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=20.81 E-value=1e+02 Score=18.41 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=33.3
Q ss_pred cCCCCCcccHHHHHHHHHhCCCCC--------------cccHH----HHHH-HHHHhCCCCCC-ceeHHHHHHHHhcCcc
Q 048406 44 DKDNTGYITVDELETAFKGYNMGD--------------DVTIA----MKKE-IMSEVDRDKDG-RISYDEFRAMMKSGTH 103 (114)
Q Consensus 44 d~~~~g~i~~~e~~~~l~~~g~~~--------------~~~~~----~~~~-~~~~~d~~~~g-~i~~~ef~~~l~~~~~ 103 (114)
+..+.+.|...+|+.++..+|... ..+.. .++. +-..++.+-.- ..+.+|+...+...+-
T Consensus 12 NVGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SGNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~vrs~~el~~i~~~nPf 91 (137)
T PF08002_consen 12 NVGGKNKIKMAELREALEDLGFTNVRTYIQSGNVVFESDRDPAELAAKIEKALEERFGFDVPVIVRSAEELRAIIAANPF 91 (137)
T ss_dssp SBTTBS---HHHHHHHHHHCT-EEEEEETTTTEEEEEESS-HHHHHHHHHHHHHHH-TT---EEEEEHHHHHHHHTT--G
T ss_pred ecCCCCcccHHHHHHHHHHcCCCCceEEEeeCCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEEeeHHHHHHHHHHCCC
Confidence 456677899999999999887331 11222 2333 33445554432 3699999999988876
Q ss_pred cc
Q 048406 104 LQ 105 (114)
Q Consensus 104 ~~ 105 (114)
..
T Consensus 92 ~~ 93 (137)
T PF08002_consen 92 PW 93 (137)
T ss_dssp GG
T ss_pred cc
Confidence 64
No 228
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=20.47 E-value=1.4e+02 Score=15.13 Aligned_cols=31 Identities=3% Similarity=0.041 Sum_probs=17.6
Q ss_pred CceeHHHHHHHHHhhchhchHHHHHHHHHhh
Q 048406 13 RTIVYIEFITATMQRHKLERFERLYKAFQHF 43 (114)
Q Consensus 13 g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~ 43 (114)
..+|-+|+...+..+...++..++..+|...
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4456666666666665555555555555433
No 229
>PRK12559 transcriptional regulator Spx; Provisional
Probab=20.44 E-value=2e+02 Score=16.99 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=30.3
Q ss_pred CCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCceeHHHHHHHHhcCccc
Q 048406 48 TGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGRISYDEFRAMMKSGTHL 104 (114)
Q Consensus 48 ~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~ 104 (114)
...++.+++..++...|.+...--..-...++..+.+. ..++-++...++...+..
T Consensus 34 ~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~L 89 (131)
T PRK12559 34 SNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLM 89 (131)
T ss_pred CCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcce
Confidence 35677888888887754331000001122445554433 346677777777766544
No 230
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=20.42 E-value=1.5e+02 Score=21.11 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=44.4
Q ss_pred chhhcccCCCCceeHHHHHHHHHhhchhchHHHHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 048406 3 TKTEADIDGNRTIVYIEFITATMQRHKLERFERLYKAFQHFDKDNTGYITVDELETAFKGY 63 (114)
Q Consensus 3 ~~~~~D~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 63 (114)
+...+|+.+.|.++.--...++.-++...-.+.++-+|..... ++|......+.+++...
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isd-s~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISD-SRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHH
Confidence 3567888889988887777777766666667888888988764 55877777777777643
No 231
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=20.33 E-value=1.4e+02 Score=15.14 Aligned_cols=19 Identities=11% Similarity=0.389 Sum_probs=12.2
Q ss_pred HHHhhcCCCCCcccHHHHH
Q 048406 39 AFQHFDKDNTGYITVDELE 57 (114)
Q Consensus 39 ~f~~~d~~~~g~i~~~e~~ 57 (114)
+...++.+++|.|+...+.
T Consensus 20 L~~~~~~~~~g~Vpi~~i~ 38 (61)
T PF05383_consen 20 LRSQMDSNPDGWVPISTIL 38 (61)
T ss_dssp HHHHHCTTTTTBEEHHHHT
T ss_pred HHHHHHhcCCCcEeHHHHH
Confidence 4455566667777777653
No 232
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=20.14 E-value=2e+02 Score=16.78 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=32.5
Q ss_pred CCCCCcccHHHHHHHHHhCCCCCcccHHHHHHHHHHhCCCCCCc-eeHHHHHHHHh
Q 048406 45 KDNTGYITVDELETAFKGYNMGDDVTIAMKKEIMSEVDRDKDGR-ISYDEFRAMMK 99 (114)
Q Consensus 45 ~~~~g~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~l~ 99 (114)
.|+++...+-=...+|..-|.....+.+++..+....-. |. ++.+++..++.
T Consensus 68 ~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA~---~~~~~~e~i~~wl~ 120 (121)
T TIGR01550 68 NNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVAT---GETISVESLADWLR 120 (121)
T ss_pred ccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHHC---CCCCCHHHHHHHHh
Confidence 345566666666666666666544555556666655543 44 88888888875
Done!