Query 048409
Match_columns 408
No_of_seqs 94 out of 96
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 09:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05060 MGAT2: N-acetylglucos 100.0 4E-129 8E-134 964.3 23.4 305 75-387 6-356 (356)
2 KOG2791 N-acetylglucosaminyltr 100.0 1E-127 3E-132 946.4 21.0 321 80-401 97-453 (455)
3 PF03071 GNT-I: GNT-I family; 99.0 1.8E-09 3.9E-14 111.6 9.5 174 98-307 92-272 (434)
4 cd02514 GT13_GLCNAC-TI GT13_GL 98.9 1.1E-08 2.4E-13 102.6 12.8 177 101-324 2-186 (334)
5 cd02522 GT_2_like_a GT_2_like_ 96.9 0.0048 1E-07 54.5 8.3 163 102-327 2-173 (221)
6 cd04186 GT_2_like_c Subfamily 96.4 0.11 2.4E-06 43.0 12.6 150 103-327 1-151 (166)
7 KOG1413 N-acetylglucosaminyltr 96.2 0.025 5.4E-07 58.5 9.4 175 98-306 66-247 (411)
8 PF13641 Glyco_tranf_2_3: Glyc 96.2 0.047 1E-06 48.8 9.9 169 99-327 1-196 (228)
9 cd06421 CESA_CelA_like CESA_Ce 95.4 0.29 6.4E-06 43.5 11.9 172 100-328 2-198 (234)
10 cd02525 Succinoglycan_BP_ExoA 95.1 0.51 1.1E-05 42.1 12.4 49 101-149 2-51 (249)
11 PF00535 Glycos_transf_2: Glyc 94.9 0.15 3.3E-06 41.6 7.8 47 103-150 2-48 (169)
12 cd04185 GT_2_like_b Subfamily 94.7 1.2 2.5E-05 39.2 13.3 79 231-327 81-160 (202)
13 cd00761 Glyco_tranf_GTA_type G 94.2 0.69 1.5E-05 36.5 9.8 47 103-150 1-47 (156)
14 cd06433 GT_2_WfgS_like WfgS an 94.1 1 2.2E-05 38.4 11.2 44 103-146 2-48 (202)
15 cd06423 CESA_like CESA_like is 93.7 0.52 1.1E-05 38.2 8.4 46 103-149 1-46 (180)
16 cd04196 GT_2_like_d Subfamily 93.3 1.2 2.5E-05 38.9 10.6 47 103-150 2-48 (214)
17 cd06420 GT2_Chondriotin_Pol_N 92.6 4.3 9.2E-05 34.7 12.9 46 103-149 1-46 (182)
18 cd06435 CESA_NdvC_like NdvC_li 92.2 2.7 5.9E-05 37.8 11.7 91 230-327 85-195 (236)
19 cd04184 GT2_RfbC_Mx_like Myxoc 90.8 10 0.00023 32.9 13.8 49 100-149 2-52 (202)
20 cd02520 Glucosylceramide_synth 89.8 2.6 5.6E-05 37.5 9.1 76 230-327 87-163 (196)
21 cd02526 GT2_RfbF_like RfbF is 89.6 6.8 0.00015 35.1 11.7 168 104-327 2-190 (237)
22 cd06434 GT2_HAS Hyaluronan syn 86.0 6.6 0.00014 35.1 9.3 44 101-147 2-46 (235)
23 cd06439 CESA_like_1 CESA_like_ 85.7 6.8 0.00015 35.6 9.4 51 99-149 29-80 (251)
24 COG1216 Predicted glycosyltran 81.6 21 0.00046 34.7 11.4 177 99-328 3-207 (305)
25 TIGR03469 HonB hopene-associat 77.0 29 0.00063 35.1 11.1 50 99-148 40-89 (384)
26 COG3062 NapD Uncharacterized p 76.6 6.1 0.00013 34.2 5.2 54 88-142 31-84 (94)
27 PRK11204 N-glycosyltransferase 75.1 21 0.00045 35.9 9.5 50 98-148 53-102 (420)
28 cd06436 GlcNAc-1-P_transferase 74.6 31 0.00066 30.8 9.5 44 103-148 1-44 (191)
29 cd04192 GT_2_like_e Subfamily 71.2 49 0.0011 29.1 9.9 45 103-147 1-46 (229)
30 cd02510 pp-GalNAc-T pp-GalNAc- 69.9 63 0.0014 30.9 11.1 37 291-327 173-211 (299)
31 PF01755 Glyco_transf_25: Glyc 66.6 25 0.00054 31.7 7.2 89 218-312 76-193 (200)
32 cd06438 EpsO_like EpsO protein 66.5 50 0.0011 28.9 8.9 47 103-149 1-48 (183)
33 TIGR03472 HpnI hopanoid biosyn 66.0 1.1E+02 0.0024 30.7 12.4 30 99-128 41-70 (373)
34 cd02511 Beta4Glucosyltransfera 64.8 15 0.00032 33.9 5.5 44 101-148 2-45 (229)
35 cd04179 DPM_DPG-synthase_like 64.8 27 0.00059 29.8 6.8 23 103-125 1-23 (185)
36 PF10111 Glyco_tranf_2_2: Glyc 64.0 47 0.001 32.0 9.0 174 103-327 2-208 (281)
37 TIGR01556 rhamnosyltran L-rham 62.4 16 0.00035 34.4 5.4 36 292-327 151-187 (281)
38 PF07209 DUF1415: Protein of u 61.1 18 0.0004 34.3 5.4 79 97-180 30-123 (174)
39 TIGR03111 glyc2_xrt_Gpos1 puta 58.7 54 0.0012 33.9 8.9 50 99-148 49-99 (439)
40 COG0463 WcaA Glycosyltransfera 58.4 20 0.00044 28.2 4.5 51 99-150 3-57 (291)
41 cd04195 GT2_AmsE_like GT2_AmsE 58.1 25 0.00054 30.6 5.5 45 104-149 3-50 (201)
42 cd02524 G1P_cytidylyltransfera 57.7 18 0.00039 34.0 4.9 53 92-148 11-63 (253)
43 KOG4181 Uncharacterized conser 57.7 4.6 0.0001 42.7 1.0 52 100-154 300-359 (491)
44 cd06532 Glyco_transf_25 Glycos 55.2 20 0.00043 30.9 4.3 54 217-316 72-126 (128)
45 cd04189 G1P_TT_long G1P_TT_lon 55.0 26 0.00057 32.0 5.3 55 91-149 12-66 (236)
46 cd04888 ACT_PheB-BS C-terminal 52.7 21 0.00045 27.0 3.6 34 100-133 42-75 (76)
47 PF09258 Glyco_transf_64: Glyc 52.2 17 0.00037 35.3 3.8 43 101-143 1-44 (247)
48 PRK14583 hmsR N-glycosyltransf 50.7 1.6E+02 0.0034 30.5 10.7 50 99-148 75-127 (444)
49 cd04197 eIF-2B_epsilon_N The N 49.6 33 0.00071 31.5 5.1 54 92-149 13-66 (217)
50 COG3310 Uncharacterized protei 46.8 33 0.00072 32.8 4.6 50 125-179 75-133 (196)
51 PRK10073 putative glycosyl tra 44.1 47 0.001 33.1 5.6 50 99-149 6-55 (328)
52 cd02508 ADP_Glucose_PP ADP-glu 43.9 38 0.00082 30.6 4.5 54 92-148 11-64 (200)
53 PRK10018 putative glycosyl tra 42.2 1.1E+02 0.0023 30.1 7.7 61 98-159 4-66 (279)
54 cd06426 NTP_transferase_like_2 41.1 40 0.00088 30.4 4.2 54 92-149 11-64 (220)
55 PF04666 Glyco_transf_54: N-Ac 39.8 1.6E+02 0.0034 30.0 8.5 79 227-326 167-245 (297)
56 cd06437 CESA_CaSu_A2 Cellulose 36.2 74 0.0016 28.8 5.1 38 100-137 2-40 (232)
57 cd04195 GT2_AmsE_like GT2_AmsE 35.2 59 0.0013 28.3 4.2 20 231-250 82-101 (201)
58 TIGR02091 glgC glucose-1-phosp 34.6 1.2E+02 0.0025 30.1 6.6 55 91-148 10-64 (361)
59 PF03991 Prion_octapep: Copper 34.1 18 0.00038 18.8 0.4 6 375-380 3-8 (8)
60 cd06427 CESA_like_2 CESA_like_ 32.6 1E+02 0.0022 28.3 5.5 50 100-149 2-52 (241)
61 COG1033 Predicted exporters of 32.6 99 0.0022 35.3 6.3 59 65-131 40-103 (727)
62 PRK01254 hypothetical protein; 31.8 76 0.0017 36.1 5.2 51 112-162 540-598 (707)
63 cd06913 beta3GnTL1_like Beta 1 31.8 76 0.0017 28.4 4.4 36 103-138 1-36 (219)
64 cd06428 M1P_guanylylT_A_like_N 31.7 76 0.0017 29.8 4.6 54 92-148 13-66 (257)
65 PF08257 Sulfakinin: Sulfakini 31.5 21 0.00046 19.0 0.5 7 195-201 2-8 (9)
66 TIGR01105 galF UTP-glucose-1-p 31.1 92 0.002 31.0 5.2 43 93-137 17-59 (297)
67 COG0488 Uup ATPase components 30.3 52 0.0011 35.8 3.6 45 108-155 183-228 (530)
68 PLN02828 formyltetrahydrofolat 30.2 71 0.0015 32.0 4.3 91 100-214 70-193 (268)
69 cd06915 NTP_transferase_WcbM_l 29.9 96 0.0021 27.6 4.7 54 92-149 11-64 (223)
70 PF13291 ACT_4: ACT domain; PD 29.5 53 0.0011 25.6 2.7 30 100-130 49-78 (80)
71 cd02523 PC_cytidylyltransferas 29.2 1E+02 0.0022 28.1 4.9 54 92-149 11-64 (229)
72 PF13124 DUF3963: Protein of u 29.2 17 0.00038 26.8 -0.1 16 138-153 11-26 (40)
73 PRK14716 bacteriophage N4 adso 29.1 5.2E+02 0.011 28.2 10.8 51 98-149 65-116 (504)
74 cd04903 ACT_LSD C-terminal ACT 27.6 1.1E+02 0.0023 22.0 3.9 33 99-133 39-71 (71)
75 PTZ00260 dolichyl-phosphate be 26.3 4.1E+02 0.009 26.7 9.0 27 98-124 69-95 (333)
76 cd04190 Chitin_synth_C C-termi 25.8 1.9E+02 0.0041 27.0 6.1 25 103-127 1-26 (244)
77 TIGR02623 G1P_cyt_trans glucos 25.8 81 0.0018 30.0 3.7 45 100-148 20-64 (254)
78 cd02541 UGPase_prokaryotic Pro 25.0 1.4E+02 0.003 28.1 5.1 45 92-138 13-57 (267)
79 cd06422 NTP_transferase_like_1 25.0 1.3E+02 0.0028 27.4 4.7 54 92-149 12-65 (221)
80 cd04198 eIF-2B_gamma_N The N-t 24.0 1.7E+02 0.0037 26.9 5.4 55 92-149 13-67 (214)
81 cd06442 DPM1_like DPM1_like re 23.8 89 0.0019 27.6 3.4 24 103-126 1-24 (224)
82 KOG1022 Acetylglucosaminyltran 23.5 1.8E+02 0.004 32.6 6.2 38 98-135 442-479 (691)
83 cd06425 M1P_guanylylT_B_like_N 23.4 95 0.0021 28.6 3.6 53 92-148 13-65 (233)
84 TIGR02459 CbtB cobalt transpor 23.3 1.2E+02 0.0026 24.5 3.6 22 14-35 15-36 (60)
85 PRK04435 hypothetical protein; 23.3 1.2E+02 0.0025 27.4 4.1 34 100-133 111-144 (147)
86 PLN03210 Resistant to P. syrin 22.8 1.1E+02 0.0025 35.8 4.8 68 130-220 69-147 (1153)
87 COG1215 Glycosyltransferases, 21.4 8.1E+02 0.018 24.3 10.6 52 98-150 53-105 (439)
88 PF01037 AsnC_trans_reg: AsnC 20.9 1.7E+02 0.0036 21.9 3.9 38 98-135 34-73 (74)
89 PRK10553 assembly protein for 20.6 1.9E+02 0.0041 24.5 4.5 21 107-127 12-32 (87)
90 PRK13936 phosphoheptose isomer 20.4 1.9E+02 0.004 27.0 4.9 45 107-151 91-135 (197)
91 PF07172 GRP: Glycine rich pro 20.2 1.2E+02 0.0025 26.1 3.2 9 26-34 12-20 (95)
92 PRK10063 putative glycosyl tra 20.1 2.3E+02 0.0051 27.0 5.6 45 100-144 2-52 (248)
No 1
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=100.00 E-value=3.7e-129 Score=964.35 Aligned_cols=305 Identities=44% Similarity=0.820 Sum_probs=278.2
Q ss_pred hhHhHHhhcC-CCCCcccCCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcccccc
Q 048409 75 LSIKLEERNQ-LPPRNVDLFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGIKFC 153 (408)
Q Consensus 75 ls~~l~~~n~-~~~~N~d~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sIdFC 153 (408)
++..+.+.|. |+++|+|+||+|+++++|||||||+||+|||+||+||++|+||+++|||||||+|++|||+||++||||
T Consensus 6 ~r~~i~~~N~~q~v~N~~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~~I~Fc 85 (356)
T PF05060_consen 6 LRNKIYQMNFNQTVLNEDKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQSIDFC 85 (356)
T ss_pred HHHHHHhhhhcceeehhhhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHHhCCcc
Confidence 4456778887 569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeeccCCccCCCCCCCCCCCccc---chhhHhhhcCCC--CCCCCCCccccccccchhHHHHHhhhhhcccccccC
Q 048409 154 QVKQIYAPYSPHLFSDGFPGVSSNDCK---DKDNATEKHCTG--TPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRG 228 (408)
Q Consensus 154 rV~QIF~PyS~ql~P~~FPG~dP~DCp---~K~~A~~~~C~n--~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~ 228 (408)
||+|||||||+||||++|||+||+||| +|++|++++|+| +||+|||||||+|||+|||||||||||||+|++|++
T Consensus 86 ~v~QIf~P~S~ql~p~~FPG~dP~DCpr~i~k~~a~~~~C~na~~pD~yGhyRea~~tq~KHHWWWk~n~Vf~~l~~~~~ 165 (356)
T PF05060_consen 86 RVMQIFYPYSIQLYPNEFPGQDPNDCPRDIKKEDALKLGCNNAEYPDSYGHYREAKFTQIKHHWWWKLNFVFDGLEETRN 165 (356)
T ss_pred eeEEEecccchhhCCCCCCCCCcccccccccHhHHHhccCCCCCCccccCCcccccchhhhHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999999999999999 799999999988 899999999999999999999999999999999999
Q ss_pred ccceEEEEccCcccchhHHHHHHHHHHhCCCCCCCcceeccCCcccccCC----------CCceeeeeeccCceEEEEeH
Q 048409 229 HTGHILFIEEDHFILPNAYRNLQILTELKPKKCPDCYAANLAPSDVNSRG----------EGGSILIAERMGNVGYTFNR 298 (408)
Q Consensus 229 ~~G~VlFLEEDHyvapDf~~vl~~m~~lk~~~cp~C~~l~Lg~~d~~~~g----------~~w~s~v~~~~hNmGmAfnR 298 (408)
|+|+||||||||||+|||||+|++|.+++++.||+|++++||+++. ..+ .+|.| ++|||||||||
T Consensus 166 ~~g~v~fLEEDhyv~pD~l~~l~~~~~~~~~~cp~c~~~sLG~y~~-~~~~~~~~~~v~~~~W~S----skHNmGmAfNR 240 (356)
T PF05060_consen 166 HNGWVLFLEEDHYVAPDFLHVLRLMIKLKKSECPDCDILSLGTYDK-SNGYQSDPNKVEVTPWIS----SKHNMGMAFNR 240 (356)
T ss_pred CCceEEEEecccccchhHHHHHHHHHHHhhhcCCCCCEEeccCCcc-ccccccccceeeeecccc----ccccceeEecH
Confidence 9999999999999999999999999999999999999999999874 222 23543 58999999999
Q ss_pred HHHHHHHhhccccCccccCChhhhhhhh-------------------------cCCC-CCCcccCCceeeeecchhHhh-
Q 048409 299 TVWRKIHRKARKFCFFDDYNWDITMWAT-------------------------GQGD-SGACIDNGVVGIRVEDSDKVA- 351 (408)
Q Consensus 299 ~~W~kI~~c~~~FC~yDDYNWDwSL~~~-------------------------G~~~-~~~C~~~~~~~~~ve~~~kv~- 351 (408)
++|++|++|+++||+|||||||||||++ |.|+ ++.|++.+.. +++++++.
T Consensus 241 s~W~kI~~ca~~FC~yDDYNWDwSL~~ls~~cl~~~~kvL~~~~PRV~HiGdCGlH~~k~~C~~~~~~---~~~v~~~~~ 317 (356)
T PF05060_consen 241 STWNKIKSCADEFCTYDDYNWDWSLQHLSQRCLPSPLKVLVPKGPRVFHIGDCGLHHKKKNCNDEDKA---IAKVEELLK 317 (356)
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHhhccCCccEEEEEccCcEEEccccccccCccccchHHHH---HHHHHHHHH
Confidence 9999999999999999999999999988 5554 7899888433 23444443
Q ss_pred hccccc---eeEEEecccCccCCCCCCCCCcchhhHHHH
Q 048409 352 NIKSEW---NVRVFKHQQGYKAGFRGWGGWGDDRDRRLC 387 (408)
Q Consensus 352 n~~~~~---~~~~~~~~~~~~~~~kgnGGWGD~RD~~LC 387 (408)
++++.+ .++++++.+++..++||||||||+|||+||
T Consensus 318 ~~~~~LfP~~l~v~~~~~~~~~~~kgnGGWGD~RDh~LC 356 (356)
T PF05060_consen 318 SNKPKLFPQSLHVSKRIPKYKKPFKGNGGWGDIRDHELC 356 (356)
T ss_pred hhhhccCCCceEEEeccccccCCCCCCCCCCChhhhhcC
Confidence 344455 678888888899999999999999999999
No 2
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-127 Score=946.42 Aligned_cols=321 Identities=60% Similarity=1.099 Sum_probs=294.4
Q ss_pred HhhcC-CCCCcccCCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcccccceeEEE
Q 048409 80 EERNQ-LPPRNVDLFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGIKFCQVKQI 158 (408)
Q Consensus 80 ~~~n~-~~~~N~d~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sIdFCrV~QI 158 (408)
.++|- +..+|+|+||.|+++.+|+||||||||+|||+||||||+++||++||||||||+|++|||++|++|+||+|+||
T Consensus 97 ~slnf~~~~~Nadkfgdla~~~~vlV~qVHnRp~Ylr~lveSlrk~kGI~~tLlifSHD~~~~eiN~~I~~i~Fc~V~Qi 176 (455)
T KOG2791|consen 97 RSLNFSPRNTNADKFGDLAKDRVVLVLQVHNRPQYLRVLVESLRKVKGISETLLIFSHDGYFEEINRIIESIKFCQVKQI 176 (455)
T ss_pred HhhcCCccccchhhcCccccceEEEEEEEcCcHHHHHHHHHHHHhccCccceEEEEeccchHHHHHHHHhhcccceeEEE
Confidence 34565 45899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCccCCCCCCCCCCCcccc---hhhHhhhcCCC--CCCCCCCccccccccchhHHHHHhhhhhcccccccCccceE
Q 048409 159 YAPYSPHLFSDGFPGVSSNDCKD---KDNATEKHCTG--TPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHI 233 (408)
Q Consensus 159 F~PyS~ql~P~~FPG~dP~DCp~---K~~A~~~~C~n--~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~V 233 (408)
|||||+||||++|||++|+|||+ |++|++.+|.| +||+|||||+|||||+|||||||||||||+++++++|.|+|
T Consensus 177 F~Pys~qlypt~FPG~~p~DCp~kmkk~~a~k~~C~n~ssPD~yGnyR~ak~~q~KHHWWWkmnfVwd~ve~~~~~~g~i 256 (455)
T KOG2791|consen 177 FSPYSPQLYPTSFPGVTPNDCPNKMKKGDAAKGHCENNSSPDQYGNYRSAKIVQLKHHWWWKMNFVWDGVEETKGHEGHI 256 (455)
T ss_pred ecCCCcccccCcCCCCCchhcccccccchhhhcCCcCCCCcccccCccchhhhhhhhhhhHhHHHHHHHHHHhccCCceE
Confidence 99999999999999999999996 89999999999 79999999999999999999999999999999999999999
Q ss_pred EEEccCcccchhHHHHHHHHHHhCCCCCCCcceeccCCcccccCC---CCceeeeeeccCceEEEEeHHHHHHHHhhccc
Q 048409 234 LFIEEDHFILPNAYRNLQILTELKPKKCPDCYAANLAPSDVNSRG---EGGSILIAERMGNVGYTFNRTVWRKIHRKARK 310 (408)
Q Consensus 234 lFLEEDHyvapDf~~vl~~m~~lk~~~cp~C~~l~Lg~~d~~~~g---~~w~s~v~~~~hNmGmAfnR~~W~kI~~c~~~ 310 (408)
|||||||||+|||||+++.|+++|+++||+|+++|||+|+..++. +.-.+++.|++||||||+||.+|+||++|+++
T Consensus 257 LflEEDH~LaPdayhv~~~l~~lkp~~Cp~C~~~sLg~y~s~sryGqD~~~v~~w~s~~hNmG~al~rn~wqki~~c~~~ 336 (455)
T KOG2791|consen 257 LFLEEDHFLAPDAYHVIQTLTRLKPAKCPDCFAASLGPYDSKSRYGQDEGLVSLWASRMHNMGYALNRNVWQKIHQCARE 336 (455)
T ss_pred EEEecccccChhHHHHHHHHHhcCcccCCcceeeecccccccccccccccceeehhhhcccchhhhhHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999877765 34456666789999999999999999999999
Q ss_pred cCccccCChhhhhhhh-------------------------cCCCCCCcccCCcee--eeecchhHhhhccccceeEEEe
Q 048409 311 FCFFDDYNWDITMWAT-------------------------GQGDSGACIDNGVVG--IRVEDSDKVANIKSEWNVRVFK 363 (408)
Q Consensus 311 FC~yDDYNWDwSL~~~-------------------------G~~~~~~C~~~~~~~--~~ve~~~kv~n~~~~~~~~~~~ 363 (408)
||+|||||||||||++ |+|+.++|......+ ..++..+|+.+..+.|.+.+++
T Consensus 337 FC~~DDYNWDwtl~~~~~~clp~~~~vl~~~~pr~~H~GdCG~H~~~~ce~~~~~~~v~~l~~~~K~~~fpe~l~v~~~~ 416 (455)
T KOG2791|consen 337 FCFFDDYNWDWTLWATVFPCLPSPVYVLRGPRPRAVHFGDCGLHQGRGCEGDCIDNGVVNLEVTDKVVNFPEGLGVRVYK 416 (455)
T ss_pred hcccccCCcceeehhhhccccCcceEEeecCCCceEEecccccccCCCCCcchhhhhhHhhhhcCceEecccceeEEEEE
Confidence 9999999999999988 678776665443331 2234568888888899999999
Q ss_pred cccCccCCCCCCCCCcchhhHHHHHHHHHhhccCCCCC
Q 048409 364 HQQGYKAGFRGWGGWGDDRDRRLCLAFARMYHLTNTAS 401 (408)
Q Consensus 364 ~~~~~~~~~kgnGGWGD~RD~~LC~~~~~~y~~~~~~~ 401 (408)
++.+++++++ ||||||+|||+||++++.||+.-+++.
T Consensus 417 ~~~~~kp~~e-nGGWGDiRDr~LC~~~~t~yr~l~s~~ 453 (455)
T KOG2791|consen 417 HQAGYKPGFE-NGGWGDIRDRHLCLDFATMYRYLSSSA 453 (455)
T ss_pred eeeeccCCcc-cCCccchhhhHHHHHHHHHHHHhhccC
Confidence 9999998866 999999999999999999999866543
No 3
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=98.97 E-value=1.8e-09 Score=111.63 Aligned_cols=174 Identities=22% Similarity=0.412 Sum_probs=96.2
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCC-CceEEEEecccchHHHHHhhcccccceeEEEeeccCCccCCCCCCCCCC
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGI-KETLLIVSHDGYFEEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGVSS 176 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI-~~~LLIfSHD~~~~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~dP 176 (408)
.+.++|+|.+-|||+||+..|+||-+.++. ++.-||||.|+..++..+.+++.. =++.=|-+| ++- |-.-+
T Consensus 92 ~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y~-~~v~~i~~~---~~~----~i~~~ 163 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSYG-DQVTYIQHP---DFS----PITIP 163 (434)
T ss_dssp -----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGGG-GGSEEEE-S-----S---------
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHhh-hhheeeecC---CcC----CceeC
Confidence 457899999999999999999999998765 577899999999999988888752 112223232 110 00000
Q ss_pred CcccchhhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccceEEEEccCcccchhHHHHHHHHHHh
Q 048409 177 NDCKDKDNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILTEL 256 (408)
Q Consensus 177 ~DCp~K~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~~l 256 (408)
|.. .+.. |.| .+-+|-=|.++.||+.+. -+.||+||||=.+||||+..+..+..+
T Consensus 164 ---~~~-----~~~~------~y~------~IA~HYk~aL~~vF~~~~-----~~~vIIlEDDL~isPDFf~Yf~~~~~l 218 (434)
T PF03071_consen 164 ---PKE-----KKFK------GYY------KIARHYKWALSQVFNKFK-----YSSVIILEDDLEISPDFFEYFSATLPL 218 (434)
T ss_dssp ---TT------GGGH------HHH------HHHHHHHHHHHHHHHTS-------SEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred ---ccc-----cccc------chH------HHHHHHHHHHHHHHHhcC-----CceEEEEecCcccCccHHHHHHHHHHH
Confidence 100 0000 123 356899999999998652 246999999999999999988766544
Q ss_pred CCCCCCCcceeccCCcccccCC----CC-ceeee-eeccCceEEEEeHHHHHHHHhh
Q 048409 257 KPKKCPDCYAANLAPSDVNSRG----EG-GSILI-AERMGNVGYTFNRTVWRKIHRK 307 (408)
Q Consensus 257 k~~~cp~C~~l~Lg~~d~~~~g----~~-w~s~v-~~~~hNmGmAfnR~~W~kI~~c 307 (408)
-.. =|. +.+.+.|.-+.+. ++ =..++ +..++.+|-++.|+.|+.|...
T Consensus 219 l~~-D~s--l~ciSawNdnG~~~~~~~~~~~~lyRsdffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 219 LEN-DPS--LWCISAWNDNGKEHFVDDSRPSLLYRSDFFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp HHH--TT--EEEEES--TT-BGGGS-TT-TT-EEEESS---SSEEEEHHHHHHHGGG
T ss_pred Hhc-CCC--eEEEEccccCCccccccCCCccceEecccCCchHHHhhHHHHHhhccc
Confidence 211 111 2222233222111 10 01122 2348899999999999998875
No 4
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.92 E-value=1.1e-08 Score=102.60 Aligned_cols=177 Identities=19% Similarity=0.358 Sum_probs=112.5
Q ss_pred eEEEEEEecchhhHHHHHHHhhccc-CCCceEEEEecccchHHHHHhhccccc-ceeEEEeeccCCccCCCCCCCCCCCc
Q 048409 101 IVIVLYVHNRPQYLKVVVESLSSVV-GIKETLLIVSHDGYFEEMNKIVDGIKF-CQVKQIYAPYSPHLFSDGFPGVSSND 178 (408)
Q Consensus 101 iviVIQVHnR~~YLr~Li~SL~~a~-gI~~~LLIfSHD~~~~eiN~lv~sIdF-CrV~QIF~PyS~ql~P~~FPG~dP~D 178 (408)
++|+|-+.|||+||+..|+||.+++ +.+..-||||.|+..++..+.++.... .+++| .| +. +.
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~--~~-------~~--~~---- 66 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQ--HP-------PI--SI---- 66 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEE--cc-------cc--cc----
Confidence 4789999999999999999999997 999999999999999888777766421 12221 11 00 00
Q ss_pred ccchhhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccceEEEEccCcccchhHHHHHHHHH-HhC
Q 048409 179 CKDKDNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILT-ELK 257 (408)
Q Consensus 179 Cp~K~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~-~lk 257 (408)
..+++. +.+. -+..+..|-=|-+|.||+.. ..+.||+||||-.++|||+..+..+. .++
T Consensus 67 -------~~~~~~------~~~~--~y~~ia~hyk~aln~vF~~~-----~~~~vIILEDDl~~sPdFf~yf~~~l~~y~ 126 (334)
T cd02514 67 -------KNVNPP------HKFQ--GYYRIARHYKWALTQTFNLF-----GYSFVIILEDDLDIAPDFFSYFQATLPLLE 126 (334)
T ss_pred -------cccCcc------cccc--hhhHHHHHHHHHHHHHHHhc-----CCCEEEEECCCCccCHhHHHHHHHHHHHHh
Confidence 001111 0111 12346678889999999763 35789999999999999998776554 334
Q ss_pred CCCCCCcceeccCCcccccCCC----Cceeeee-eccCceEEEEeHHHHHHHHhhccccCccccCChhhhhh
Q 048409 258 PKKCPDCYAANLAPSDVNSRGE----GGSILIA-ERMGNVGYTFNRTVWRKIHRKARKFCFFDDYNWDITMW 324 (408)
Q Consensus 258 ~~~cp~C~~l~Lg~~d~~~~g~----~w~s~v~-~~~hNmGmAfnR~~W~kI~~c~~~FC~yDDYNWDwSL~ 324 (408)
... .+..+| .+.-+.... .=.+++- ..++-.|-++.|++|+++ +. .+.. |||-+|
T Consensus 127 ~D~--~v~~IS--a~NdnG~~~~~~~~~~~lyrs~ff~glGWml~r~~W~e~----~~--~wp~--~~WD~w 186 (334)
T cd02514 127 EDP--SLWCIS--AWNDNGKEHFVDDTPSLLYRTDFFPGLGWMLTRKLWKEL----EP--KWPK--AFWDDW 186 (334)
T ss_pred cCC--CEEEEE--eeccCCcccccCCCcceEEEecCCCchHHHHHHHHHHHh----CC--CCCC--CChHHh
Confidence 322 222222 222111100 1112222 236678888999999998 22 4555 566666
No 5
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.90 E-value=0.0048 Score=54.51 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=88.9
Q ss_pred EEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcccccceeEEEeeccCCccCCCCCCCCCCCcccc
Q 048409 102 VIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGVSSNDCKD 181 (408)
Q Consensus 102 viVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~dP~DCp~ 181 (408)
.|||=+||++++|..+|+||.+... ...=+||.=|.-.++.-++++.+. + ++. +.. +|
T Consensus 2 svii~~~n~~~~l~~~l~sl~~q~~-~~~evivvdd~s~d~~~~~~~~~~---~--~~~-------~~~-~g-------- 59 (221)
T cd02522 2 SIIIPTLNEAENLPRLLASLRRLNP-LPLEIIVVDGGSTDGTVAIARSAG---V--VVI-------SSP-KG-------- 59 (221)
T ss_pred EEEEEccCcHHHHHHHHHHHHhccC-CCcEEEEEeCCCCccHHHHHhcCC---e--EEE-------eCC-cC--------
Confidence 4566699999999999999998876 333444444455566666666621 1 111 100 11
Q ss_pred hhhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccceEEEEccCcccchhHHHHHHHHHHhCCCCC
Q 048409 182 KDNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILTELKPKKC 261 (408)
Q Consensus 182 K~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~~lk~~~c 261 (408)
+ |+ .+|.-++.. + ...|+|++.|-++.|+++.-+ +....+.
T Consensus 60 ~---------------~~---------------a~n~g~~~a---~--~~~i~~~D~D~~~~~~~l~~l--~~~~~~~-- 100 (221)
T cd02522 60 R---------------AR---------------QMNAGAAAA---R--GDWLLFLHADTRLPPDWDAAI--IETLRAD-- 100 (221)
T ss_pred H---------------HH---------------HHHHHHHhc---c--CCEEEEEcCCCCCChhHHHHH--HHHhhcC--
Confidence 1 11 122222221 1 467999999999999998875 2333322
Q ss_pred CCcceeccC----Ccccc----cCCCCcee-eeeeccCceEEEEeHHHHHHHHhhccccCccccCChhhhhhhhc
Q 048409 262 PDCYAANLA----PSDVN----SRGEGGSI-LIAERMGNVGYTFNRTVWRKIHRKARKFCFFDDYNWDITMWATG 327 (408)
Q Consensus 262 p~C~~l~Lg----~~d~~----~~g~~w~s-~v~~~~hNmGmAfnR~~W~kI~~c~~~FC~yDDYNWDwSL~~~G 327 (408)
.+.+.... ..+.. .....+.. .........||+++|++|+++-.-.+.+ .++|+.+-..++..|
T Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~fd~~~-~~ED~d~~~r~~~~G 173 (221)
T cd02522 101 -GAVAGAFRLRFDDPGPRLRLLELGANLRSRLFGLPYGDQGLFIRRELFEELGGFPELP-LMEDVELVRRLRRRG 173 (221)
T ss_pred -CcEEEEEEeeecCCccchhhhhhcccceecccCCCcCCceEEEEHHHHHHhCCCCccc-cccHHHHHHHHHhCC
Confidence 11111111 11100 00000000 0001133568999999999998877777 667765555554444
No 6
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.38 E-value=0.11 Score=42.97 Aligned_cols=150 Identities=15% Similarity=0.206 Sum_probs=81.9
Q ss_pred EEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcccccceeEEEeeccCCccCCCCCCCCCCCcccch
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGVSSNDCKDK 182 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~dP~DCp~K 182 (408)
|||=++||+++|+.+|+||.+... ...-+|+.=|.-.++..+.++.. .+-..++.+
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~-~~~~iiivdd~s~~~~~~~~~~~--~~~~~~~~~--------------------- 56 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTY-PDFEVIVVDNASTDGSVELLREL--FPEVRLIRN--------------------- 56 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccC-CCeEEEEEECCCCchHHHHHHHh--CCCeEEEec---------------------
Confidence 467789999999999999999876 33344444444333333333321 111111110
Q ss_pred hhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccceEEEEccCcccchhHHHHHHHHHHhCCCCCC
Q 048409 183 DNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILTELKPKKCP 262 (408)
Q Consensus 183 ~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~~lk~~~cp 262 (408)
++..|.- . ..|..++.. -..+|+|++.|.++.||++..+. ..+.. .+
T Consensus 57 -----------~~~~g~~-~------------a~n~~~~~~-----~~~~i~~~D~D~~~~~~~l~~~~--~~~~~--~~ 103 (166)
T cd04186 57 -----------GENLGFG-A------------GNNQGIREA-----KGDYVLLLNPDTVVEPGALLELL--DAAEQ--DP 103 (166)
T ss_pred -----------CCCcChH-H------------HhhHHHhhC-----CCCEEEEECCCcEECccHHHHHH--HHHHh--CC
Confidence 0011111 0 124444433 24679999999999999866443 22222 24
Q ss_pred CcceeccCCcccccCCCCceeeeeeccCceEEEEeHHHHHHHHhhcccc-CccccCChhhhhhhhc
Q 048409 263 DCYAANLAPSDVNSRGEGGSILIAERMGNVGYTFNRTVWRKIHRKARKF-CFFDDYNWDITMWATG 327 (408)
Q Consensus 263 ~C~~l~Lg~~d~~~~g~~w~s~v~~~~hNmGmAfnR~~W~kI~~c~~~F-C~yDDYNWDwSL~~~G 327 (408)
+|.+++-. ...-+++|+|++|+++..-...| ...+|+.+-+.+...|
T Consensus 104 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g 151 (166)
T cd04186 104 DVGIVGPK------------------VSGAFLLVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAG 151 (166)
T ss_pred CceEEEcc------------------CceeeEeeeHHHHHHcCCCChhhhccccHHHHHHHHHHcC
Confidence 45444311 13567799999999987544433 3334544444443333
No 7
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=96.22 E-value=0.025 Score=58.53 Aligned_cols=175 Identities=14% Similarity=0.233 Sum_probs=112.0
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcc-cCCCceEEEEecccchHHHHHhhcccccceeEEEeeccCCccCCCCCCCCCC
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSV-VGIKETLLIVSHDGYFEEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGVSS 176 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a-~gI~~~LLIfSHD~~~~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~dP 176 (408)
++-++|||..=+|+++|+.-++.|-.- +-.+.-.+|||.|.-.++.-+-+++-- .++-+ +-+|. |..-
T Consensus 66 ~~v~pvvVf~csR~~~lr~~v~kll~yrPsaekfpiiVSQD~~~e~vk~~~~~~g----~~v~~----i~~~~---h~~~ 134 (411)
T KOG1413|consen 66 PPVIPVVVFACSRADALRRHVKKLLEYRPSAEKFPIIVSQDCEKEAVKKKLLSYG----SDVSH----IQHPM---HLKD 134 (411)
T ss_pred CCceeEEEEecCcHHHHHHHHHHHHHhCcchhhcCEEEeccCCcHHHHHHHHHhc----cchhh----hcCcc---cccc
Confidence 456889999999999999999998654 456799999999999877766555321 11111 11110 1100
Q ss_pred CcccchhhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccceEEEEccCcccchhHHHHHHHHHHh
Q 048409 177 NDCKDKDNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILTEL 256 (408)
Q Consensus 177 ~DCp~K~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~~l 256 (408)
+ +. -|-..+.+-+ +-.+.-|-=|.+|.+|-... .+.||..|+|-=++|||+.-+.-...+
T Consensus 135 e--i~-----------v~~~~~k~~~--Yy~IarHYkwAL~q~F~~~~-----~s~vii~eDDl~iapDFF~YF~~t~~l 194 (411)
T KOG1413|consen 135 E--IS-----------VPPRHKKFNA--YYKIARHYKWALNQLFIVFR-----ESRVIITEDDLNIAPDFFSYFRNTIIL 194 (411)
T ss_pred c--cc-----------cCCcccccch--hHHHHHHHHHHHhhHHhhcC-----CceeEEecchhhhhhHHHHHHHHHHHH
Confidence 0 00 0000111111 22455599999999995553 578999999999999999998877766
Q ss_pred CCCCCCCcceeccCCcccccCCCCceee-----eee-ccCceEEEEeHHHHHHHHh
Q 048409 257 KPKKCPDCYAANLAPSDVNSRGEGGSIL-----IAE-RMGNVGYTFNRTVWRKIHR 306 (408)
Q Consensus 257 k~~~cp~C~~l~Lg~~d~~~~g~~w~s~-----v~~-~~hNmGmAfnR~~W~kI~~ 306 (408)
.+.. |. +-+...|+-|+++++.++. +.+ .+..+|-.+.+.+|+.+..
T Consensus 195 lk~D-~s--iwcvsaWNDNGk~~~Id~~~~~~lYRtDFFpGLGWml~~~~W~ELsp 247 (411)
T KOG1413|consen 195 LKGD-PS--IWCVSAWNDNGKKQTIDSTRPSLLYRTDFFPGLGWMLTKKLWEELSP 247 (411)
T ss_pred HhcC-Cc--eEEeeeeccCCCcccccccccchhhhccccccchHHHHHHHHHhhCC
Confidence 5432 22 1222235556666655542 111 2678999999999999977
No 8
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=96.16 E-value=0.047 Score=48.75 Aligned_cols=169 Identities=19% Similarity=0.232 Sum_probs=80.8
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHH----HHHhhcccccceeEEEeeccCCccCCCCCCCC
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEE----MNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGV 174 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~e----iN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~ 174 (408)
|.+.|||-++|+++.|+..|+||.+... .+.-+||.=|.-.++ +.++.+...-.++.-|..+
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~-~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~------------- 66 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDY-PRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRP------------- 66 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHH-HTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE---------------
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCC-CCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecC-------------
Confidence 3588999999999999999999999877 444444433444433 4444444443332221111
Q ss_pred CCCcccchhhHhhhcCCCCCCCCCCccccccccchhHHHHH---hhhhhcccccccCccceEEEEccCcccchhHHHHHH
Q 048409 175 SSNDCKDKDNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWM---MNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQ 251 (408)
Q Consensus 175 dP~DCp~K~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk---~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~ 251 (408)
++ .++.-| +|..++.. + ..+|+||+.|..+.||++.-+.
T Consensus 67 ----~~-----------------------------~g~~~k~~a~n~~~~~~---~--~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 67 ----RN-----------------------------PGPGGKARALNEALAAA---R--GDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHH--------SEEEEE-SSEEE-CHHHHHHH
T ss_pred ----CC-----------------------------CCcchHHHHHHHHHHhc---C--CCEEEEECCCcEECHHHHHHHH
Confidence 00 111112 22222221 1 5589999999999999977533
Q ss_pred HHHHhCCCCCCCcceeccCCcccccCCCCc--------------------eeeeeeccCceEEEEeHHHHHHHHhhcccc
Q 048409 252 ILTELKPKKCPDCYAANLAPSDVNSRGEGG--------------------SILIAERMGNVGYTFNRTVWRKIHRKARKF 311 (408)
Q Consensus 252 ~m~~lk~~~cp~C~~l~Lg~~d~~~~g~~w--------------------~s~v~~~~hNmGmAfnR~~W~kI~~c~~~F 311 (408)
..+. .|++.++. +...... ++.+ ...-....+.-+++|.|++++++-.-.. |
T Consensus 109 --~~~~---~~~~~~v~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~-~ 180 (228)
T PF13641_consen 109 --AAFA---DPGVGAVG-GPVFPDN-DRNWLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP-F 180 (228)
T ss_dssp --HHHH---BSS--EEE-EEEEETT-CCCEEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-S--S-S
T ss_pred --HHHH---hCCCCeEe-eeEeecC-CCCHHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCC-C
Confidence 3331 23333333 1110000 0000 0000011234678999999999965433 8
Q ss_pred CccccCChhhhhhhhc
Q 048409 312 CFFDDYNWDITMWATG 327 (408)
Q Consensus 312 C~yDDYNWDwSL~~~G 327 (408)
+..+|+.+-..+..-|
T Consensus 181 ~~~eD~~l~~r~~~~G 196 (228)
T PF13641_consen 181 ILGEDFDLCLRLRAAG 196 (228)
T ss_dssp SSSHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHCC
Confidence 8888876555554444
No 9
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=95.45 E-value=0.29 Score=43.47 Aligned_cols=172 Identities=12% Similarity=0.093 Sum_probs=94.5
Q ss_pred ceEEEEEEecch-hhHHHHHHHhhcccCCCc-eEEEEecccchHHHHHhhcccccceeEEEeeccCCccCCCCCCCCCCC
Q 048409 100 HIVIVLYVHNRP-QYLKVVVESLSSVVGIKE-TLLIVSHDGYFEEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGVSSN 177 (408)
Q Consensus 100 ~iviVIQVHnR~-~YLr~Li~SL~~a~gI~~-~LLIfSHD~~~~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~dP~ 177 (408)
.+.|||=++|+. ++|+..|+||.+...-.+ .-|||.=|.-.++.-+++++.. .-.++.+
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~--~~~~~~~----------------- 62 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELG--VEYGYRY----------------- 62 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhh--cccCceE-----------------
Confidence 477888899985 899999999998776542 3455555666677777777542 1001000
Q ss_pred cccchhhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccceEEEEccCcccchhHHHHHHHHHHhC
Q 048409 178 DCKDKDNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILTELK 257 (408)
Q Consensus 178 DCp~K~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~~lk 257 (408)
..+. .. +.++.+ .+|..++.. ...+|+||+.|.++.||++..+- ..+.
T Consensus 63 ----------~~~~---~~-~~~~~~-----------~~n~~~~~a-----~~d~i~~lD~D~~~~~~~l~~l~--~~~~ 110 (234)
T cd06421 63 ----------LTRP---DN-RHAKAG-----------NLNNALAHT-----TGDFVAILDADHVPTPDFLRRTL--GYFL 110 (234)
T ss_pred ----------EEeC---CC-CCCcHH-----------HHHHHHHhC-----CCCEEEEEccccCcCccHHHHHH--HHHh
Confidence 0000 00 000000 134444322 24589999999999999977543 3332
Q ss_pred CCCCCCcceeccCCcccccCC-----------------------CCceeeeeeccCceEEEEeHHHHHHHHhhccccCcc
Q 048409 258 PKKCPDCYAANLAPSDVNSRG-----------------------EGGSILIAERMGNVGYTFNRTVWRKIHRKARKFCFF 314 (408)
Q Consensus 258 ~~~cp~C~~l~Lg~~d~~~~g-----------------------~~w~s~v~~~~hNmGmAfnR~~W~kI~~c~~~FC~y 314 (408)
. .+++.++.-........+ ..|.. ......+++|.|++++++..-.+.+. .
T Consensus 111 ~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~r~~~~~~ig~~~~~~~-~ 184 (234)
T cd06421 111 D--DPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGA---AFCCGSGAVVRREALDEIGGFPTDSV-T 184 (234)
T ss_pred c--CCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCC---ceecCceeeEeHHHHHHhCCCCccce-e
Confidence 2 233333321000000000 00110 11245789999999999987654333 5
Q ss_pred ccCChhhhhhhhcC
Q 048409 315 DDYNWDITMWATGQ 328 (408)
Q Consensus 315 DDYNWDwSL~~~G~ 328 (408)
+|+.+-+.++..|+
T Consensus 185 eD~~l~~r~~~~g~ 198 (234)
T cd06421 185 EDLATSLRLHAKGW 198 (234)
T ss_pred ccHHHHHHHHHcCc
Confidence 78777777766663
No 10
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=95.12 E-value=0.51 Score=42.13 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=34.2
Q ss_pred eEEEEEEecchhhHHHHHHHhhcccCC-CceEEEEecccchHHHHHhhcc
Q 048409 101 IVIVLYVHNRPQYLKVVVESLSSVVGI-KETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 101 iviVIQVHnR~~YLr~Li~SL~~a~gI-~~~LLIfSHD~~~~eiN~lv~s 149 (408)
+.|||=++|++++|..+|+||.+...- ...-+|+.-|.-.++..++++.
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~ 51 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQE 51 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHH
Confidence 567888999999999999999876432 2334555555555555555554
No 11
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.90 E-value=0.15 Score=41.62 Aligned_cols=47 Identities=28% Similarity=0.378 Sum_probs=34.5
Q ss_pred EEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhccc
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGI 150 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sI 150 (408)
|||-++|++++|+.+|+||++. .-...=+||.-|.-.++..++++..
T Consensus 2 vvip~~n~~~~l~~~l~sl~~q-~~~~~eiivvdd~s~d~~~~~~~~~ 48 (169)
T PF00535_consen 2 VVIPTYNEAEYLERTLESLLKQ-TDPDFEIIVVDDGSTDETEEILEEY 48 (169)
T ss_dssp EEEEESS-TTTHHHHHHHHHHH-SGCEEEEEEEECS-SSSHHHHHHHH
T ss_pred EEEEeeCCHHHHHHHHHHHhhc-cCCCEEEEEeccccccccccccccc
Confidence 6788999999999999999999 3334445666777677777776654
No 12
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.66 E-value=1.2 Score=39.20 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=45.6
Q ss_pred ceEEEEccCcccchhHHHHHHHHHHhCCCCCCCcceeccCCcccccCCCCceeeeeeccCceEEEEeHHHHHHHHhhccc
Q 048409 231 GHILFIEEDHFILPNAYRNLQILTELKPKKCPDCYAANLAPSDVNSRGEGGSILIAERMGNVGYTFNRTVWRKIHRKARK 310 (408)
Q Consensus 231 G~VlFLEEDHyvapDf~~vl~~m~~lk~~~cp~C~~l~Lg~~d~~~~g~~w~s~v~~~~hNmGmAfnR~~W~kI~~c~~~ 310 (408)
.+|+||+.|-.+.||++..+- ..++ .+.+.++. +.-+...+ ..-|+.+.|++|+++-...+.
T Consensus 81 d~v~~ld~D~~~~~~~l~~l~--~~~~---~~~~~~~~--~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~ 142 (202)
T cd04185 81 DWIWLMDDDAIPDPDALEKLL--AYAD---KDNPQFLA--PLVLDPDG-----------SFVGVLISRRVVEKIGLPDKE 142 (202)
T ss_pred CEEEEeCCCCCcChHHHHHHH--HHHh---cCCceEec--ceeEcCCC-----------ceEEEEEeHHHHHHhCCCChh
Confidence 589999999999999977543 3333 33333322 11111111 235789999999988543222
Q ss_pred c-CccccCChhhhhhhhc
Q 048409 311 F-CFFDDYNWDITMWATG 327 (408)
Q Consensus 311 F-C~yDDYNWDwSL~~~G 327 (408)
| =.++|..+-+.+...|
T Consensus 143 ~~~~~eD~~~~~r~~~~G 160 (202)
T cd04185 143 FFIWGDDTEYTLRASKAG 160 (202)
T ss_pred hhccchHHHHHHHHHHcC
Confidence 2 2335555555554444
No 13
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=94.17 E-value=0.69 Score=36.54 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=34.3
Q ss_pred EEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhccc
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGI 150 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sI 150 (408)
|+|-+.++++++..+|+|+.+..- ...-+++..|.-.++..+.+.+.
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~ 47 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTY-PNFEVIVVDDGSTDGTLEILEEY 47 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCc-cceEEEEEeCCCCccHHHHHHHH
Confidence 477899999999999999999863 33345666666666666665543
No 14
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.05 E-value=1 Score=38.42 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=28.7
Q ss_pred EEEEEecchhhHHHHHHHhhcccCCCceEEEE---ecccchHHHHHh
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVGIKETLLIV---SHDGYFEEMNKI 146 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIf---SHD~~~~eiN~l 146 (408)
|||=++|++++|+.+|+||.+...-.--++|+ |.|...+.+.++
T Consensus 2 ivi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~ 48 (202)
T cd06433 2 IITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKY 48 (202)
T ss_pred EEEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHh
Confidence 56779999999999999998766443223333 344444444444
No 15
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=93.67 E-value=0.52 Score=38.20 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=33.9
Q ss_pred EEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
|||=++||+++|+.+|+||.+... ...-||+.-|.-.++..++++.
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~-~~~~iivvdd~s~d~t~~~~~~ 46 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDY-PKLEVIVVDDGSTDDTLEILEE 46 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCC-CceEEEEEeCCCccchHHHHHH
Confidence 456699999999999999998654 5566666666666555555554
No 16
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.32 E-value=1.2 Score=38.87 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=36.5
Q ss_pred EEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhccc
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGI 150 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sI 150 (408)
|||=++||.++|...|+||.+...- +.-+||.-|.-.++..++++..
T Consensus 2 IvIp~yn~~~~l~~~l~sl~~q~~~-~~eiiVvddgS~d~t~~~~~~~ 48 (214)
T cd04196 2 VLMATYNGEKYLREQLDSILAQTYK-NDELIISDDGSTDGTVEIIKEY 48 (214)
T ss_pred EEEEecCcHHHHHHHHHHHHhCcCC-CeEEEEEeCCCCCCcHHHHHHH
Confidence 5677999999999999999987643 5677777787777666666643
No 17
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=92.61 E-value=4.3 Score=34.75 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=33.2
Q ss_pred EEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
|||=++|++++|+.+|+||.+..... .-||+.-|.-.++..+++++
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~-~eiivvdd~s~d~t~~~~~~ 46 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILP-FEVIIADDGSTEETKELIEE 46 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCC-CEEEEEeCCCchhHHHHHHH
Confidence 46678999999999999999877544 34555567666665555554
No 18
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=92.24 E-value=2.7 Score=37.84 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=52.0
Q ss_pred cceEEEEccCcccchhHHHHHHHHHHhCCCCCCCcceeccCCccccc-CCCC------ce--ee-----ee------ecc
Q 048409 230 TGHILFIEEDHFILPNAYRNLQILTELKPKKCPDCYAANLAPSDVNS-RGEG------GS--IL-----IA------ERM 289 (408)
Q Consensus 230 ~G~VlFLEEDHyvapDf~~vl~~m~~lk~~~cp~C~~l~Lg~~d~~~-~g~~------w~--s~-----v~------~~~ 289 (408)
...|+||+.|-.+.||++.-+ +..+.. +++.++. ++..... .+.. |. .. .. ...
T Consensus 85 ~d~i~~lD~D~~~~~~~l~~l--~~~~~~---~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (236)
T cd06435 85 AEIIAVIDADYQVEPDWLKRL--VPIFDD---PRVGFVQ-APQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQ 158 (236)
T ss_pred CCEEEEEcCCCCcCHHHHHHH--HHHhcC---CCeeEEe-cCccccCCCccHHHHHHhHHHHHHHHHHhccccccCceEE
Confidence 357999999999999998754 333432 3444442 1111100 0000 10 00 00 001
Q ss_pred CceEEEEeHHHHHHHHhhccccCccccCChhhhhhhhc
Q 048409 290 GNVGYTFNRTVWRKIHRKARKFCFFDDYNWDITMWATG 327 (408)
Q Consensus 290 hNmGmAfnR~~W~kI~~c~~~FC~yDDYNWDwSL~~~G 327 (408)
+..+|+|.|++++++-...+.+ ..+|+.+-+.+...|
T Consensus 159 ~g~~~~~rr~~~~~iGgf~~~~-~~eD~dl~~r~~~~G 195 (236)
T cd06435 159 HGTMCLIRRSALDDVGGWDEWC-ITEDSELGLRMHEAG 195 (236)
T ss_pred ecceEEEEHHHHHHhCCCCCcc-ccchHHHHHHHHHCC
Confidence 3345899999999997665444 368887777776666
No 19
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=90.78 E-value=10 Score=32.93 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=33.2
Q ss_pred ceEEEEEEecch-hhHHHHHHHhhcccCCCceEEEEecccch-HHHHHhhcc
Q 048409 100 HIVIVLYVHNRP-QYLKVVVESLSSVVGIKETLLIVSHDGYF-EEMNKIVDG 149 (408)
Q Consensus 100 ~iviVIQVHnR~-~YLr~Li~SL~~a~gI~~~LLIfSHD~~~-~eiN~lv~s 149 (408)
.+-|||=++|+. ++|...|+||.+...- ..-+|+.-|.-. +.+..+++.
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~-~~eiivvd~gs~d~~~~~~~~~ 52 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYP-NWELCIADDASTDPEVKRVLKK 52 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCC-CeEEEEEeCCCCChHHHHHHHH
Confidence 467788899999 9999999999876532 334555555543 345555543
No 20
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=89.81 E-value=2.6 Score=37.49 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=46.4
Q ss_pred cceEEEEccCcccchhHHHHHHHHHHhCCCCCCCcceeccCCcccccCCCCceeeeeeccCceEEEEeHHHHHHHHhhcc
Q 048409 230 TGHILFIEEDHFILPNAYRNLQILTELKPKKCPDCYAANLAPSDVNSRGEGGSILIAERMGNVGYTFNRTVWRKIHRKAR 309 (408)
Q Consensus 230 ~G~VlFLEEDHyvapDf~~vl~~m~~lk~~~cp~C~~l~Lg~~d~~~~g~~w~s~v~~~~hNmGmAfnR~~W~kI~~c~~ 309 (408)
..+|+|++.|..+.||++.-+ +..+.. |++.++. +. .....+|+|.|++|+++..-..
T Consensus 87 ~d~i~~~D~D~~~~~~~l~~l--~~~~~~---~~~~~v~--~~---------------~~~g~~~~~r~~~~~~~ggf~~ 144 (196)
T cd02520 87 YDILVISDSDISVPPDYLRRM--VAPLMD---PGVGLVT--CL---------------CAFGKSMALRREVLDAIGGFEA 144 (196)
T ss_pred CCEEEEECCCceEChhHHHHH--HHHhhC---CCCCeEE--ee---------------cccCceeeeEHHHHHhccChHH
Confidence 357999999999999997743 333332 2333222 10 1235678999999999977643
Q ss_pred cc-CccccCChhhhhhhhc
Q 048409 310 KF-CFFDDYNWDITMWATG 327 (408)
Q Consensus 310 ~F-C~yDDYNWDwSL~~~G 327 (408)
.. .-++||.+-..+...|
T Consensus 145 ~~~~~~eD~~l~~rl~~~G 163 (196)
T cd02520 145 FADYLAEDYFLGKLIWRLG 163 (196)
T ss_pred HhHHHHHHHHHHHHHHHcC
Confidence 22 2245665555554445
No 21
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=89.63 E-value=6.8 Score=35.08 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=85.2
Q ss_pred EEEEecch-hhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcccccceeEEEeeccCCccCCCCCCCCCCCcccch
Q 048409 104 VLYVHNRP-QYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGVSSNDCKDK 182 (408)
Q Consensus 104 VIQVHnR~-~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~dP~DCp~K 182 (408)
||=.+|+. ++|+.+|+||.+. ..+ ||+--|.-+++.....+. ...++.-|..|..
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q--~~~--iivvDn~s~~~~~~~~~~-~~~~i~~i~~~~n------------------- 57 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ--VDK--VVVVDNSSGNDIELRLRL-NSEKIELIHLGEN------------------- 57 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc--CCE--EEEEeCCCCccHHHHhhc-cCCcEEEEECCCc-------------------
Confidence 34489999 9999999999986 333 444445444444433332 2333333332210
Q ss_pred hhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccceEEEEccCcccchhHHHHHHHHHHhCCCCCC
Q 048409 183 DNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILTELKPKKCP 262 (408)
Q Consensus 183 ~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~~lk~~~cp 262 (408)
.| +-...|.-++..... -..+|+||+.|-++.||++..+. +........+
T Consensus 58 --------------~G-------------~~~a~N~g~~~a~~~--~~d~v~~lD~D~~~~~~~l~~l~-~~~~~~~~~~ 107 (237)
T cd02526 58 --------------LG-------------IAKALNIGIKAALEN--GADYVLLFDQDSVPPPDMVEKLL-AYKILSDKNS 107 (237)
T ss_pred --------------ee-------------hHHhhhHHHHHHHhC--CCCEEEEECCCCCcCHhHHHHHH-HHHHhhccCC
Confidence 01 122334444332110 13589999999999999988763 1111111223
Q ss_pred CcceeccCCc--ccccC--CCCc--------------eee-eeeccCceEEEEeHHHHHHHHhhc-cccCccccCChhhh
Q 048409 263 DCYAANLAPS--DVNSR--GEGG--------------SIL-IAERMGNVGYTFNRTVWRKIHRKA-RKFCFFDDYNWDIT 322 (408)
Q Consensus 263 ~C~~l~Lg~~--d~~~~--g~~w--------------~s~-v~~~~hNmGmAfnR~~W~kI~~c~-~~FC~yDDYNWDwS 322 (408)
...+. |+. +.... ...+ ... -......-||+++|++++++-.-. +.|..++|+.|-+.
T Consensus 108 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r 185 (237)
T cd02526 108 NIGAV--GPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLR 185 (237)
T ss_pred CeEEE--eeeEEcCCCCeeccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHHHcCccchHHHHHH
Confidence 22221 221 00000 0000 000 000012347899999999986543 23444567777777
Q ss_pred hhhhc
Q 048409 323 MWATG 327 (408)
Q Consensus 323 L~~~G 327 (408)
+...|
T Consensus 186 ~~~~G 190 (237)
T cd02526 186 ARSKG 190 (237)
T ss_pred HHHcC
Confidence 76656
No 22
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=86.04 E-value=6.6 Score=35.14 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=32.8
Q ss_pred eEEEEEEecch-hhHHHHHHHhhcccCCCceEEEEecccchHHHHHhh
Q 048409 101 IVIVLYVHNRP-QYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIV 147 (408)
Q Consensus 101 iviVIQVHnR~-~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv 147 (408)
+-|||=+||++ ++|...|+||.+.. ..-+||.-|.-.++...++
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~---~~eiivvdd~s~d~~~~~l 46 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK---PLEIIVVTDGDDEPYLSIL 46 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCC---CCEEEEEeCCCChHHHHHH
Confidence 55788899999 99999999999876 3334555566666666655
No 23
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=85.66 E-value=6.8 Score=35.61 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=37.2
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCc-eEEEEecccchHHHHHhhcc
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKE-TLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~-~LLIfSHD~~~~eiN~lv~s 149 (408)
+.+.|||=+||+.++|..+|+|+.+...-.. .-+||.=|.-.++.-++++.
T Consensus 29 ~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~ 80 (251)
T cd06439 29 PTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE 80 (251)
T ss_pred CEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH
Confidence 4688999999999999999999988765443 44555556655555555553
No 24
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=81.59 E-value=21 Score=34.67 Aligned_cols=177 Identities=20% Similarity=0.250 Sum_probs=95.3
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCceEEEE---ecccchHHHHHhhcccccceeEEEeeccCCccCCCCCCCCC
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIV---SHDGYFEEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGVS 175 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIf---SHD~~~~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~d 175 (408)
+.+.+||=.|||.+++...|+||+++..-...++++ |+|.-.+-+..-. |=.|.=|..+
T Consensus 3 ~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~----~~~v~~i~~~-------------- 64 (305)
T COG1216 3 PKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF----FPNVRLIENG-------------- 64 (305)
T ss_pred cceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc----CCcEEEEEcC--------------
Confidence 456778889999999999999999999888777743 3343333332221 2222222221
Q ss_pred CCcccchhhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccc-eEEEEccCcccchhHHHHHHHHH
Q 048409 176 SNDCKDKDNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTG-HILFIEEDHFILPNAYRNLQILT 254 (408)
Q Consensus 176 P~DCp~K~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G-~VlFLEEDHyvapDf~~vl~~m~ 254 (408)
.|.-=..|+.+- ++....... +|+||-.|..+.||++.-|-...
T Consensus 65 ---------------~NlG~agg~n~g--------------------~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~ 109 (305)
T COG1216 65 ---------------ENLGFAGGFNRG--------------------IKYALAKGDDYVLLLNPDTVVEPDLLEELLKAA 109 (305)
T ss_pred ---------------CCccchhhhhHH--------------------HHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHH
Confidence 000001122321 111111111 79999999999999976543332
Q ss_pred HhCCCCC-CCcceeccCCcc-cccCC-----CC--c-eeeeeec----------cC-ceE--EEEeHHHHHHHHhhc-cc
Q 048409 255 ELKPKKC-PDCYAANLAPSD-VNSRG-----EG--G-SILIAER----------MG-NVG--YTFNRTVWRKIHRKA-RK 310 (408)
Q Consensus 255 ~lk~~~c-p~C~~l~Lg~~d-~~~~g-----~~--w-~s~v~~~----------~h-NmG--mAfnR~~W~kI~~c~-~~ 310 (408)
+..+..| -.+.+.+.+... ....+ .. | .+...+. .. =-| |.+.|+++++|-.-- +.
T Consensus 110 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~ 189 (305)
T COG1216 110 EEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDERF 189 (305)
T ss_pred HhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCccc
Confidence 2222111 111122111100 00000 00 1 0000000 00 135 999999999998633 58
Q ss_pred cCccccCChhhhhhhhcC
Q 048409 311 FCFFDDYNWDITMWATGQ 328 (408)
Q Consensus 311 FC~yDDYNWDwSL~~~G~ 328 (408)
|+-+||..|.|-+...|.
T Consensus 190 F~y~eD~D~~~R~~~~G~ 207 (305)
T COG1216 190 FIYYEDVDLCLRARKAGY 207 (305)
T ss_pred ceeehHHHHHHHHHHcCC
Confidence 999999999999988874
No 25
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=76.99 E-value=29 Score=35.10 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=33.1
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhc
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~ 148 (408)
+.+-|||=++|..+.|..+|+||.+..--.+.-+||.=|.-.++.-++++
T Consensus 40 p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~ 89 (384)
T TIGR03469 40 PAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIAR 89 (384)
T ss_pred CCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHH
Confidence 46888999999999999999999876532223344444444443334443
No 26
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=76.56 E-value=6.1 Score=34.23 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=42.0
Q ss_pred CcccCCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHH
Q 048409 88 RNVDLFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEE 142 (408)
Q Consensus 88 ~N~d~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~e 142 (408)
.|.+.++.-+...+|+|||.+ |.+-|-.-|+|++..+||=.+-|||+|---..|
T Consensus 31 p~~EV~~~d~~GKlVVVie~~-~~~~l~~tie~i~nl~gVlav~lVyhqqd~q~e 84 (94)
T COG3062 31 PGCEVYGEDAEGKLVVVIEAE-DSETLLETIESIRNLPGVLAVSLVYHQQDEQGE 84 (94)
T ss_pred CCcEeeccCCCceEEEEEEcC-chHHHHHHHHHHhcCCceeEEEEEEEEEeccCc
Confidence 477777654346899999975 677888889999999999999999999444333
No 27
>PRK11204 N-glycosyltransferase; Provisional
Probab=75.05 E-value=21 Score=35.89 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=36.0
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhc
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~ 148 (408)
.+.+.|+|=+||+.+.++..|+|+.+...-. .-+|+-=|.-.++..++++
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~~q~yp~-~eiiVvdD~s~d~t~~~l~ 102 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLLALRYPN-YEVIAINDGSSDNTGEILD 102 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHhCCCCC-eEEEEEECCCCccHHHHHH
Confidence 3568888889999999999999999876653 3445545555555555544
No 28
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=74.57 E-value=31 Score=30.76 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=32.3
Q ss_pred EEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhc
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~ 148 (408)
|||=++|..++|..+|+||.+.. ...-+|+-=|.-.++.-++++
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~--~~~eIivvdd~S~D~t~~~~~ 44 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK--PNFLVLVIDDASDDDTAGIVR 44 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC--CCeEEEEEECCCCcCHHHHHh
Confidence 46679999999999999999876 445566655555555555555
No 29
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.24 E-value=49 Score=29.06 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=29.4
Q ss_pred EEEEEecchhhHHHHHHHhhcccCCC-ceEEEEecccchHHHHHhh
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVGIK-ETLLIVSHDGYFEEMNKIV 147 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~gI~-~~LLIfSHD~~~~eiN~lv 147 (408)
|||=++|++++|+..|+||.+...-. ..-+|+.=|.-.++..+++
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~ 46 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQIL 46 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHH
Confidence 46668999999999999998776443 2344444444444333443
No 30
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=69.95 E-value=63 Score=30.91 Aligned_cols=37 Identities=8% Similarity=0.237 Sum_probs=27.4
Q ss_pred ceEEEEeHHHHHHHHhhccccCc--cccCChhhhhhhhc
Q 048409 291 NVGYTFNRTVWRKIHRKARKFCF--FDDYNWDITMWATG 327 (408)
Q Consensus 291 NmGmAfnR~~W~kI~~c~~~FC~--yDDYNWDwSL~~~G 327 (408)
.-.|++.|++|++|-.-.+.|-. ++|..+-+.+|..|
T Consensus 173 g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G 211 (299)
T cd02510 173 GGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCG 211 (299)
T ss_pred ceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcC
Confidence 34679999999999877666654 36776666677665
No 31
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=66.62 E-value=25 Score=31.67 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=53.2
Q ss_pred hhhcccccccCccceEEEEccCcccchhHHHHHHHHHHhCCCCCCCcceeccCCccc----------------ccCCCCc
Q 048409 218 TVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILTELKPKKCPDCYAANLAPSDV----------------NSRGEGG 281 (408)
Q Consensus 218 ~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~~lk~~~cp~C~~l~Lg~~d~----------------~~~g~~w 281 (408)
.+|+.+-.. -..+++.||+|-++.+||...+..+.+.-+ ..+.+.+|.+.. ......+
T Consensus 76 ~~w~~~v~~--~~~~~lIlEDDv~~~~~f~~~l~~~~~~~~----~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (200)
T PF01755_consen 76 KAWQRIVDS--GLEYALILEDDVIFDPDFKEFLEEILSHIP----DWDFLRLGGWKDNSYSPGDIFLSRLSTFLSRSKRY 149 (200)
T ss_pred HHHHHHHHc--CCCeEEEEeccccccccHHHHHHHHHhhcc----cccchhhccccccccccccccceeeeehhhhhhhc
Confidence 456665432 236899999999999999888776554332 344444422100 0000000
Q ss_pred e----------eee---eeccCceEEEEeHHHHHHHHhhccccC
Q 048409 282 S----------ILI---AERMGNVGYTFNRTVWRKIHRKARKFC 312 (408)
Q Consensus 282 ~----------s~v---~~~~hNmGmAfnR~~W~kI~~c~~~FC 312 (408)
. ..+ ...-...||+++|..=++|....+.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~t~aY~Is~~gA~kLL~~~~~~~ 193 (200)
T PF01755_consen 150 KRKPIPPFGSRKLIRPAKYPYGTCAYLISRKGARKLLEASKPIR 193 (200)
T ss_pred ccCcccccCCceEEeecCCCCcceeeeeCHHHHHHHHHhCcCCC
Confidence 0 000 011367899999999999999877765
No 32
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=66.53 E-value=50 Score=28.87 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=30.2
Q ss_pred EEEEEecchhhHHHHHHHhhcccC-CCceEEEEecccchHHHHHhhcc
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVG-IKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~g-I~~~LLIfSHD~~~~eiN~lv~s 149 (408)
|||=++|..+.++.+|+||.+... ....-+||-=|.-.++..++++.
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~ 48 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA 48 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH
Confidence 467799999999999999988653 22222222234444555566554
No 33
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=66.05 E-value=1.1e+02 Score=30.72 Aligned_cols=30 Identities=10% Similarity=-0.041 Sum_probs=25.6
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCC
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIK 128 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~ 128 (408)
+.+-|+|=+||..++++..|+|+.+...-+
T Consensus 41 p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~ 70 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLASFCRQDYPG 70 (373)
T ss_pred CCeEEEEECCCCChhHHHHHHHHHhcCCCC
Confidence 457788889999999999999999887544
No 34
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=64.84 E-value=15 Score=33.87 Aligned_cols=44 Identities=18% Similarity=0.359 Sum_probs=29.1
Q ss_pred eEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhc
Q 048409 101 IVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 101 iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~ 148 (408)
+.+||=++|..++|+..|+||.... .+.++| =|+-.+..-++++
T Consensus 2 isvii~~~Ne~~~l~~~l~sl~~~~--~eiivv--D~gStD~t~~i~~ 45 (229)
T cd02511 2 LSVVIITKNEERNIERCLESVKWAV--DEIIVV--DSGSTDRTVEIAK 45 (229)
T ss_pred EEEEEEeCCcHHHHHHHHHHHhccc--CEEEEE--eCCCCccHHHHHH
Confidence 5678889999999999999998652 344443 3333334444444
No 35
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=64.80 E-value=27 Score=29.78 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.6
Q ss_pred EEEEEecchhhHHHHHHHhhccc
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVV 125 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~ 125 (408)
|||=+||+++.|..+|+||.+..
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~ 23 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVL 23 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHh
Confidence 46779999999999999999885
No 36
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=63.99 E-value=47 Score=32.03 Aligned_cols=174 Identities=20% Similarity=0.234 Sum_probs=92.7
Q ss_pred EEEEEecchhh------HHHHHHHhhcccCCCceEEEEecccch----HHHHHhhcccccceeEEEeeccCCccCCCCCC
Q 048409 103 IVLYVHNRPQY------LKVVVESLSSVVGIKETLLIVSHDGYF----EEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFP 172 (408)
Q Consensus 103 iVIQVHnR~~Y------Lr~Li~SL~~a~gI~~~LLIfSHD~~~----~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FP 172 (408)
|+|=|++|.++ |+..+.+|.+..-=.+.-+||..+.-. +++.+++++..+-.+...-. +
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~-----------~ 70 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHED-----------N 70 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCC-----------C
Confidence 56777777743 555589999865556777888877655 55677777777664433111 1
Q ss_pred CCCCCcccchhhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccceEEEEccCcccchhHHHHHHH
Q 048409 173 GVSSNDCKDKDNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQI 252 (408)
Q Consensus 173 G~dP~DCp~K~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~ 252 (408)
+. .= ++..| |+.=+.+ .-+..|+||+-|-+++||++.-+..
T Consensus 71 ~~--~f--~~a~a---------------rN~g~~~--------------------A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 71 GE--PF--SRAKA---------------RNIGAKY--------------------ARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred CC--Cc--CHHHH---------------HHHHHHH--------------------cCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 10 00 11122 2211111 1345799999999999999875543
Q ss_pred -HHHhCCCCCCCcceec---c---CCccccc-CCCCce-----eeee--------eccCceEEEEeHHHHHHHHhhcccc
Q 048409 253 -LTELKPKKCPDCYAAN---L---APSDVNS-RGEGGS-----ILIA--------ERMGNVGYTFNRTVWRKIHRKARKF 311 (408)
Q Consensus 253 -m~~lk~~~cp~C~~l~---L---g~~d~~~-~g~~w~-----s~v~--------~~~hNmGmAfnR~~W~kI~~c~~~F 311 (408)
...+... .....+.. | ++..+.. ....|. +... .....-.++++|+.|.+|-+--+.|
T Consensus 112 ~~~~l~~~-~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f 190 (281)
T PF10111_consen 112 HVKKLDKN-PNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERF 190 (281)
T ss_pred HHHHHhcC-CCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCccc
Confidence 1133321 11222211 1 1101100 000111 0000 0122356799999999999988887
Q ss_pred C--ccccCChhhhhhhhc
Q 048409 312 C--FFDDYNWDITMWATG 327 (408)
Q Consensus 312 C--~yDDYNWDwSL~~~G 327 (408)
= -+.|...-+-|...|
T Consensus 191 ~G~G~ED~D~~~RL~~~~ 208 (281)
T PF10111_consen 191 RGWGYEDIDFGYRLKKAG 208 (281)
T ss_pred cCCCcchHHHHHHHHHcC
Confidence 3 245666666665554
No 37
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=62.44 E-value=16 Score=34.40 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=28.3
Q ss_pred eEEEEeHHHHHHHHh-hccccCccccCChhhhhhhhc
Q 048409 292 VGYTFNRTVWRKIHR-KARKFCFFDDYNWDITMWATG 327 (408)
Q Consensus 292 mGmAfnR~~W~kI~~-c~~~FC~yDDYNWDwSL~~~G 327 (408)
-|+.++|+++++|-. ..+.|..++|..|-+.+...|
T Consensus 151 sg~li~~~~~~~iG~fde~~fi~~~D~e~~~R~~~~G 187 (281)
T TIGR01556 151 SGCLITREVYQRLGMMDEELFIDHVDTEWSLRAQNYG 187 (281)
T ss_pred CcceeeHHHHHHhCCccHhhcccchHHHHHHHHHHCC
Confidence 377899999999965 345678888888888886665
No 38
>PF07209 DUF1415: Protein of unknown function (DUF1415); InterPro: IPR009858 This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.
Probab=61.09 E-value=18 Score=34.29 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=52.0
Q ss_pred CCCceEEEEEEecc-hhhHHHHHHHhh-----cccCCCceEEEEec---ccc-----hHHHHHhhcccccceeEEEeecc
Q 048409 97 AKDHIVIVLYVHNR-PQYLKVVVESLS-----SVVGIKETLLIVSH---DGY-----FEEMNKIVDGIKFCQVKQIYAPY 162 (408)
Q Consensus 97 ~~~~iviVIQVHnR-~~YLr~Li~SL~-----~a~gI~~~LLIfSH---D~~-----~~eiN~lv~sIdFCrV~QIF~Py 162 (408)
..+.|-++|---.. -..|..|++-|. ..+.|+.||||+-+ |++ .+..++++..-.+=-+.||-.
T Consensus 30 ~~~~Ir~~V~~a~~~~~ll~~l~~El~~L~~~~~~~ieTTLli~P~~l~dF~dy~dfl~~a~~ll~~~~~eG~~QlAs-- 107 (174)
T PF07209_consen 30 VKGQIRYVVSEATDPEDLLEDLLEELQRLAADDEPEIETTLLIFPNGLDDFDDYNDFLDMADALLEELGLEGVYQLAS-- 107 (174)
T ss_pred cCCCEEEEEeCCCCHHHHHHHHHHHHHHHhcCCccccceEEEECCCcccCHHHHHHHHHHHHHHHHHcCCCceEEEec--
Confidence 34566555433322 344555555544 45689999999887 332 266778888888999999843
Q ss_pred CCccCC-CCCCCCCCCccc
Q 048409 163 SPHLFS-DGFPGVSSNDCK 180 (408)
Q Consensus 163 S~ql~P-~~FPG~dP~DCp 180 (408)
+|| ..|.|.+|.|.-
T Consensus 108 ---FHP~y~F~g~~~dd~~ 123 (174)
T PF07209_consen 108 ---FHPDYQFAGTEPDDAS 123 (174)
T ss_pred ---cCccCCCCCcCccchh
Confidence 344 379999888865
No 39
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=58.73 E-value=54 Score=33.91 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=35.6
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCc-eEEEEecccchHHHHHhhc
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKE-TLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~-~LLIfSHD~~~~eiN~lv~ 148 (408)
+.+-|||=+||..+.|..+|+||.+...=.+ .-+|+--|.-.++..++++
T Consensus 49 P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~ 99 (439)
T TIGR03111 49 PDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFC 99 (439)
T ss_pred CCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHH
Confidence 4678888999999999999999998765433 2255555655555555544
No 40
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=58.36 E-value=20 Score=28.16 Aligned_cols=51 Identities=25% Similarity=0.252 Sum_probs=36.7
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCC-ceEEEE---ecccchHHHHHhhccc
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIK-ETLLIV---SHDGYFEEMNKIVDGI 150 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~-~~LLIf---SHD~~~~eiN~lv~sI 150 (408)
+.+.|+|=++|+.+||...|+|+.+..... + ++|+ |.|.-.+.+.++....
T Consensus 3 ~~~siiip~~n~~~~l~~~l~s~~~q~~~~~e-iivvddgs~d~t~~~~~~~~~~~ 57 (291)
T COG0463 3 PKVSVVIPTYNEEEYLPEALESLLNQTYKDFE-IIVVDDGSTDGTTEIAIEYGAKD 57 (291)
T ss_pred ccEEEEEeccchhhhHHHHHHHHHhhhhcceE-EEEEeCCCCCChHHHHHHHhhhc
Confidence 567899999999999999999999988776 4 3333 3444445555555443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=58.12 E-value=25 Score=30.62 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=27.5
Q ss_pred EEEEecc--hhhHHHHHHHhhcccCCCceEEEEecccc-hHHHHHhhcc
Q 048409 104 VLYVHNR--PQYLKVVVESLSSVVGIKETLLIVSHDGY-FEEMNKIVDG 149 (408)
Q Consensus 104 VIQVHnR--~~YLr~Li~SL~~a~gI~~~LLIfSHD~~-~~eiN~lv~s 149 (408)
+|=++|+ ++||+..|+||.+...-..-++|+. |.- .+...++++.
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivd-d~ss~d~t~~~~~~ 50 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVK-DGPVTQSLNEVLEE 50 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEE-CCCCchhHHHHHHH
Confidence 4445554 6899999999998764433444443 443 3445555544
No 42
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=57.74 E-value=18 Score=34.02 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=39.6
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~ 148 (408)
++.++.....--.+.|..|| =+.+++++|+++ ||++.++|+.|.. +++.+.++
T Consensus 11 Rl~plt~~~pK~llpv~~~p-~i~~~~~~~~~~-gi~~i~iv~~~~~--~~i~~~~~ 63 (253)
T cd02524 11 RLSEETELKPKPMVEIGGRP-ILWHIMKIYSHY-GHNDFILCLGYKG--HVIKEYFL 63 (253)
T ss_pred ccCCccCCCCceEEEECCEE-HHHHHHHHHHhC-CCceEEEECCCCH--HHHHHHHH
Confidence 34455555555688899999 779999999998 9999999999753 44555443
No 43
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.65 E-value=4.6 Score=42.69 Aligned_cols=52 Identities=31% Similarity=0.461 Sum_probs=40.8
Q ss_pred ceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecc-cch-HHHHHhh------cccccce
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHD-GYF-EEMNKIV------DGIKFCQ 154 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD-~~~-~eiN~lv------~sIdFCr 154 (408)
++||||| -.-|.+.||+-|..|.-|..+|-||+|- .|+ +.|-.|| .+||||.
T Consensus 300 HivivV~---d~~~d~~lir~L~~Ae~~rP~laifrh~~~~~r~~~p~lVFv~~KA~riDf~p 359 (491)
T KOG4181|consen 300 HIVIVVI---DGLADEQLIRLLNAAERLRPTLAIFRHCKGYVRDHMPQLVFVRAKAHRIDFEP 359 (491)
T ss_pred hEEEEEe---cchhHHHHHHHHHHHHhhCcccCccccccccccccCcceEEEeccccccccCh
Confidence 7888877 4578999999999999999999999995 333 3355554 4688875
No 44
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=55.18 E-value=20 Score=30.87 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=38.7
Q ss_pred hhhhcccccccCccceEEEEccCcccchhHHHHHHHHHHhCCCCCCCcceeccCCcccccCCCCceeeeeeccCceEEEE
Q 048409 217 NTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILTELKPKKCPDCYAANLAPSDVNSRGEGGSILIAERMGNVGYTF 296 (408)
Q Consensus 217 n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~~lk~~~cp~C~~l~Lg~~d~~~~g~~w~s~v~~~~hNmGmAf 296 (408)
-.+|+.+.... -..++.||+|-.+.++ ...||++
T Consensus 72 ~~~w~~~~~~~--~~~alIlEDDv~~~~~--------------------------------------------~~~~Y~v 105 (128)
T cd06532 72 YKLWQKIVESN--LEYALILEDDAILDPD--------------------------------------------GTAGYLV 105 (128)
T ss_pred HHHHHHHHHcC--CCeEEEEccCcEECCC--------------------------------------------CceEEEe
Confidence 36777774332 2579999999999999 2678888
Q ss_pred eHHHHHHHHhhccc-cCcccc
Q 048409 297 NRTVWRKIHRKARK-FCFFDD 316 (408)
Q Consensus 297 nR~~W~kI~~c~~~-FC~yDD 316 (408)
+|..=+++...++. .+-.|.
T Consensus 106 s~~~A~~ll~~~~~~~~pvD~ 126 (128)
T cd06532 106 SRKGAKKLLAALEPIDLPVDV 126 (128)
T ss_pred CHHHHHHHHHhCCCccccccc
Confidence 88888888876655 444443
No 45
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=54.98 E-value=26 Score=32.02 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=42.1
Q ss_pred cCCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 91 DLFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 91 d~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
.+|+++..+...-.+.+.+| .-+.++|+.|.++ |+++..+|+++ ..+++.+.+++
T Consensus 12 ~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~-~~~~i~vv~~~--~~~~~~~~~~~ 66 (236)
T cd04189 12 TRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREA-GIEDIGIVVGP--TGEEIKEALGD 66 (236)
T ss_pred ccccccccCCCceeeEECCc-chHHHHHHHHHHC-CCCEEEEEcCC--CHHHHHHHhcc
Confidence 45666655555667888899 6789999999987 89999888887 56777777664
No 46
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.74 E-value=21 Score=27.05 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=29.4
Q ss_pred ceEEEEEEecchhhHHHHHHHhhcccCCCceEEE
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLI 133 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLI 133 (408)
.+.+.|.++++..-|..+++.|++.+||.++-++
T Consensus 42 ~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 42 NVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 5778888888877999999999999999987653
No 47
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=52.16 E-value=17 Score=35.34 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=33.9
Q ss_pred eEEEEEE-ecchhhHHHHHHHhhcccCCCceEEEEecccchHHH
Q 048409 101 IVIVLYV-HNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEM 143 (408)
Q Consensus 101 iviVIQV-HnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~ei 143 (408)
+.+||+. +.|++-|+.+|.+|++.+.+.+.++|=+.+.--++.
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~ 44 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPS 44 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THH
T ss_pred CEEEEEecccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcc
Confidence 3578899 999999999999999999999999998885544433
No 48
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=50.72 E-value=1.6e+02 Score=30.51 Aligned_cols=50 Identities=8% Similarity=0.106 Sum_probs=33.8
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCceEEEE---ecccchHHHHHhhc
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIV---SHDGYFEEMNKIVD 148 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIf---SHD~~~~eiN~lv~ 148 (408)
+.+.|+|=+||....++..|+|+.+...-.--++|+ |-|.-.++++++.+
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~ 127 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLA 127 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHH
Confidence 468899999999999999999998876544234444 23333345555443
No 49
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=49.62 E-value=33 Score=31.54 Aligned_cols=54 Identities=19% Similarity=0.336 Sum_probs=42.3
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
++.|+......-.+-|-+|| =+.+.|++|.++ ||++..|++.+ ..++|.+.+++
T Consensus 13 Rl~plt~~~pK~llpi~g~p-iI~~~l~~l~~~-Gi~~I~iv~~~--~~~~i~~~l~~ 66 (217)
T cd04197 13 RFRPLTKEKPRCLLPLANVP-LIDYTLEFLALN-GVEEVFVFCCS--HSDQIKEYIEK 66 (217)
T ss_pred cccccccCCCceeeEECCEe-hHHHHHHHHHHC-CCCeEEEEeCC--CHHHHHHHHhh
Confidence 45565555556678888997 899999999995 99999888875 56788888775
No 50
>COG3310 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.79 E-value=33 Score=32.83 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=35.6
Q ss_pred cCCCceEEEEec---ccch-----HHHHHhhcccccceeEEEeeccCCccCCC-CCCCCCCCcc
Q 048409 125 VGIKETLLIVSH---DGYF-----EEMNKIVDGIKFCQVKQIYAPYSPHLFSD-GFPGVSSNDC 179 (408)
Q Consensus 125 ~gI~~~LLIfSH---D~~~-----~eiN~lv~sIdFCrV~QIF~PyS~ql~P~-~FPG~dP~DC 179 (408)
..|+.||||+-| ||.+ +-...+|..-+|=-+.|+-. +||+ .|-|+||.|=
T Consensus 75 ~eleTTLlV~P~ll~DF~d~n~~ld~~dA~i~~~~~egilQvAs-----FHPd~~FagtdpdD~ 133 (196)
T COG3310 75 TELETTLLVHPTLLPDFDDFNDMLDIADAAIVENGLEGILQVAS-----FHPDFQFAGTDPDDI 133 (196)
T ss_pred hhhceeEEeeccccchhhHHHHHHHHHHHHHHhcCcceeEeeec-----cCCCceecCCChhhh
Confidence 358899999765 5543 44456677788999999732 3443 7999999874
No 51
>PRK10073 putative glycosyl transferase; Provisional
Probab=44.15 E-value=47 Score=33.13 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=36.7
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
+.+-|||=++|+.+||+..|+||.+... ...-+|+.-|+-.++-.++++.
T Consensus 6 p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~-~~~EIIiVdDgStD~t~~i~~~ 55 (328)
T PRK10073 6 PKLSIIIPLYNAGKDFRAFMESLIAQTW-TALEIIIVNDGSTDNSVEIAKH 55 (328)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhCCC-CCeEEEEEeCCCCccHHHHHHH
Confidence 4678888899999999999999997764 3445666677765544444443
No 52
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=43.94 E-value=38 Score=30.65 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=40.0
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~ 148 (408)
++.|+..+....++.|-+|+.-+.+.|+.|.++ ||++.++|++|+ .++|.+.+.
T Consensus 11 Rl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~--~~~i~~~~~ 64 (200)
T cd02508 11 RLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYK--SRSLNDHLG 64 (200)
T ss_pred ccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCC--hHHHHHHHh
Confidence 445555555566888889855788999999984 999999999987 355555554
No 53
>PRK10018 putative glycosyl transferase; Provisional
Probab=42.22 E-value=1.1e+02 Score=30.14 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=42.1
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccch--HHHHHhhcccccceeEEEe
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYF--EEMNKIVDGIKFCQVKQIY 159 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~--~eiN~lv~sIdFCrV~QIF 159 (408)
.+.+-|||=++|+.+|+...|+|+.+...- ..-||+.-|.-. +.+.++++....-++.-|.
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~Qt~~-~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~ 66 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLRQDYS-NWEMIIVDDCSTSWEQLQQYVTALNDPRITYIH 66 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhCCCC-CeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEE
Confidence 356888999999999999999999887553 345555555444 4566777665544554443
No 54
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=41.09 E-value=40 Score=30.37 Aligned_cols=54 Identities=15% Similarity=0.242 Sum_probs=38.8
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
+|+++..+..--.+-+++|| -+.++|+.|.++ |+++..++++|. .+++.+.+..
T Consensus 11 R~~plt~~~pK~ll~~~g~p-li~~~l~~l~~~-~~~~iivv~~~~--~~~i~~~~~~ 64 (220)
T cd06426 11 RLRPLTENTPKPMLKVGGKP-ILETIIDRFIAQ-GFRNFYISVNYL--AEMIEDYFGD 64 (220)
T ss_pred ccCcccCCCCCccCeECCcc-hHHHHHHHHHHC-CCcEEEEECccC--HHHHHHHHCC
Confidence 45555444445577789996 889999999987 999998887763 4556665543
No 55
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=39.75 E-value=1.6e+02 Score=30.01 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=60.1
Q ss_pred cCccceEEEEccCcccchhHHHHHHHHHHhCCCCCCCcceeccCCcccccCCCCceeeeeeccCceEEEEeHHHHHHHHh
Q 048409 227 RGHTGHILFIEEDHFILPNAYRNLQILTELKPKKCPDCYAANLAPSDVNSRGEGGSILIAERMGNVGYTFNRTVWRKIHR 306 (408)
Q Consensus 227 r~~~G~VlFLEEDHyvapDf~~vl~~m~~lk~~~cp~C~~l~Lg~~d~~~~g~~w~s~v~~~~hNmGmAfnR~~W~kI~~ 306 (408)
++..-+.|.||+|-..+|+|+.-++......+. ..|..+--++.+-.|-.|.++..-.+..
T Consensus 167 ~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~~-------------------~~W~~LeFs~lG~iGKlf~s~dL~~l~~ 227 (297)
T PF04666_consen 167 QNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWES-------------------KDWLYLEFSQLGFIGKLFRSSDLPRLAR 227 (297)
T ss_pred HhcCCeEEEecCCeEechhHHHHHHHHHHHhcC-------------------CCceEEEeecCcchhheeccccHHHHHH
Confidence 344568999999999999999876544433321 3687654444677899999999999999
Q ss_pred hccccCccccCChhhhhhhh
Q 048409 307 KARKFCFFDDYNWDITMWAT 326 (408)
Q Consensus 307 c~~~FC~yDDYNWDwSL~~~ 326 (408)
-...| |.|.=+||=|.+.
T Consensus 228 fl~~f--y~~~P~D~Ll~~~ 245 (297)
T PF04666_consen 228 FLLMF--YKDKPIDWLLDHF 245 (297)
T ss_pred HHHHH--hhcCcHHHHHHHH
Confidence 87777 8999999999654
No 56
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=36.21 E-value=74 Score=28.78 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=28.4
Q ss_pred ceEEEEEEecchhhHHHHHHHhhcccCCC-ceEEEEecc
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSVVGIK-ETLLIVSHD 137 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a~gI~-~~LLIfSHD 137 (408)
.+-|||=+||..++|...|+||.+...-. +.-||+.-|
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~ 40 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD 40 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC
Confidence 46788889999999999999999866543 333445445
No 57
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=35.24 E-value=59 Score=28.29 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=17.5
Q ss_pred ceEEEEccCcccchhHHHHH
Q 048409 231 GHILFIEEDHFILPNAYRNL 250 (408)
Q Consensus 231 G~VlFLEEDHyvapDf~~vl 250 (408)
.+|+||+.|-++.||++..+
T Consensus 82 d~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 82 DWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred CEEEEeCCccccCcHHHHHH
Confidence 47999999999999998754
No 58
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=34.57 E-value=1.2e+02 Score=30.09 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=37.5
Q ss_pred cCCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhc
Q 048409 91 DLFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 91 d~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~ 148 (408)
.+|.|+..+..--++-|-.|+.-+.++|++|+++ ||++..+|..+ ..+++.+.++
T Consensus 10 tRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~--~~~~i~~~~~ 64 (361)
T TIGR02091 10 SRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQY--KSHSLNRHIQ 64 (361)
T ss_pred CccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEecc--ChHHHHHHHH
Confidence 3556665555555677778766678889999997 89999887775 2344555454
No 59
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=34.08 E-value=18 Score=18.76 Aligned_cols=6 Identities=67% Similarity=1.714 Sum_probs=4.5
Q ss_pred CCCCcc
Q 048409 375 WGGWGD 380 (408)
Q Consensus 375 nGGWGD 380 (408)
-||||.
T Consensus 3 gG~Wgq 8 (8)
T PF03991_consen 3 GGGWGQ 8 (8)
T ss_pred CCcCCC
Confidence 488984
No 60
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=32.63 E-value=1e+02 Score=28.27 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=32.4
Q ss_pred ceEEEEEEecchhhHHHHHHHhhcccC-CCceEEEEecccchHHHHHhhcc
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSVVG-IKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a~g-I~~~LLIfSHD~~~~eiN~lv~s 149 (408)
.+-|||=++|..++|..+|+||.+..- -...-+||--|.-.++..++++.
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~ 52 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA 52 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH
Confidence 577899999999999999999988642 12223333333334444445544
No 61
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=32.58 E-value=99 Score=35.25 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=42.5
Q ss_pred ccCCCCCchhhhHhHHhhcCCCCCcccCCCCCCCCceEEEEEE---ecc--hhhHHHHHHHhhcccCCCceE
Q 048409 65 AKSNLPKQNELSIKLEERNQLPPRNVDLFPNLAKDHIVIVLYV---HNR--PQYLKVVVESLSSVVGIKETL 131 (408)
Q Consensus 65 ~~~~l~~~~~ls~~l~~~n~~~~~N~d~F~~l~~~~iviVIQV---HnR--~~YLr~Li~SL~~a~gI~~~L 131 (408)
....+|..++...+.+..+ | .|+ ..++.++|+|.- -++ .+|++.|.+.|++.+|++++-
T Consensus 40 ~~~~~~~d~~~~k~y~~~~-----~--~f~-~~~~~i~v~ie~~dv~~~e~~~~~~~l~~~l~~i~gV~~v~ 103 (727)
T COG1033 40 TETFLPKDNEEYKNYDRLY-----K--EFG-SGTSLIVVVIEGDDVFSPEVLEALDSLEERLEEIPGVSSVF 103 (727)
T ss_pred ccccCCCchHHHHHHHHHH-----H--hhC-CCCceEEEEEeCCCCCCHHHHHHHHHHHHHHhcCCCceecc
Confidence 3567888888888877763 2 233 234567777765 344 588889999999999999876
No 62
>PRK01254 hypothetical protein; Provisional
Probab=31.80 E-value=76 Score=36.09 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=36.9
Q ss_pred hhHHHHHHHhhcccCCCce---EEEEecccch-HHHH---Hhhcccccce-eEEEeecc
Q 048409 112 QYLKVVVESLSSVVGIKET---LLIVSHDGYF-EEMN---KIVDGIKFCQ-VKQIYAPY 162 (408)
Q Consensus 112 ~YLr~Li~SL~~a~gI~~~---LLIfSHD~~~-~eiN---~lv~sIdFCr-V~QIF~Py 162 (408)
+-++.+++.+++.-|++-. -+|++|.+-. +||. ++++.+.|=. -.|||+|+
T Consensus 540 e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPt 598 (707)
T PRK01254 540 DRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPS 598 (707)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecC
Confidence 5668889999999887644 4899998775 3444 5566666653 45999994
No 63
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=31.79 E-value=76 Score=28.42 Aligned_cols=36 Identities=33% Similarity=0.263 Sum_probs=25.5
Q ss_pred EEEEEecchhhHHHHHHHhhcccCCCceEEEEeccc
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDG 138 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~ 138 (408)
|||=++|+.++|+.+|+||.+...-.+.=+|+-=|.
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~ 36 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDA 36 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCC
Confidence 467799999999999999988754433334443333
No 64
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=31.69 E-value=76 Score=29.85 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=38.4
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~ 148 (408)
++.++......-.+-|..| --+.+.|++|.++.||++.+++..| ..+++.+.+.
T Consensus 13 Rl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~--~~~~i~~~l~ 66 (257)
T cd06428 13 RFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFY--PESVFSDFIS 66 (257)
T ss_pred ccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecC--CHHHHHHHHH
Confidence 4455554555556778999 6679999999998899999877765 3445555554
No 65
>PF08257 Sulfakinin: Sulfakinin family; InterPro: IPR013259 The sulfakinin (SK) family of neuropeptides have only been identified in crustaceans and insects. For most species there is the potential for producing two sulfakinin peptides, one has a short sulfakinin sequence. The function of the sulfakinins is difficult to assess. For the Periplaneta americana (American cockroach), various forms of the endogenous sulfakinins have been shown to be active on the hindgut, and also on the heart. In Calliphora vomitoria (Blue blowfly) the peptides act as neurotransmitters or neuromodulators, linking the brain with all thoracic and abdominal ganglia. In adults of Penaeus monodon (Penoeid shrimp) they appear to be restricted to a few neurones in the brain with a neural pathway extending along to the ventral thoracic and abdominal ganglia [].
Probab=31.53 E-value=21 Score=19.03 Aligned_cols=7 Identities=57% Similarity=1.170 Sum_probs=5.8
Q ss_pred CCCCCcc
Q 048409 195 DQYGNHR 201 (408)
Q Consensus 195 D~yGhyR 201 (408)
|-|||.|
T Consensus 2 ~dyghmr 8 (9)
T PF08257_consen 2 DDYGHMR 8 (9)
T ss_pred Ccccccc
Confidence 6799987
No 66
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=31.07 E-value=92 Score=31.03 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=34.3
Q ss_pred CCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecc
Q 048409 93 FPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHD 137 (408)
Q Consensus 93 F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD 137 (408)
+.|+.++..--.+.|-.|| -+.++|+.|.++ ||++.+++++|.
T Consensus 17 L~PlT~~~PKpLvpV~gkP-iI~~vl~~l~~~-Gi~~ivivv~~~ 59 (297)
T TIGR01105 17 MLPATKAIPKEMLPIVDKP-MIQYIVDEIVAA-GIKEIVLVTHAS 59 (297)
T ss_pred cCcccCCCCceeeEECCEE-HHHHHHHHHHHC-CCCEEEEEecCC
Confidence 3445455555578889999 899999999985 899999999984
No 67
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=30.34 E-value=52 Score=35.84 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=35.3
Q ss_pred ecchhhHHHHHHHhhcccCCCceEEEEecccch-HHHHHhhccccccee
Q 048409 108 HNRPQYLKVVVESLSSVVGIKETLLIVSHDGYF-EEMNKIVDGIKFCQV 155 (408)
Q Consensus 108 HnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~-~eiN~lv~sIdFCrV 155 (408)
|=-.+-..-|-+-|.+-+| |+||||||.++ +++-.-|-.|+.-++
T Consensus 183 HLD~~~i~WLe~~L~~~~g---tviiVSHDR~FLd~V~t~I~~ld~g~l 228 (530)
T COG0488 183 HLDLESIEWLEDYLKRYPG---TVIVVSHDRYFLDNVATHILELDRGKL 228 (530)
T ss_pred ccCHHHHHHHHHHHHhCCC---cEEEEeCCHHHHHHHhhheEEecCCce
Confidence 5556777888888888888 99999999776 777777777777643
No 68
>PLN02828 formyltetrahydrofolate deformylase
Probab=30.21 E-value=71 Score=32.00 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=58.5
Q ss_pred ceEEEEEEecchhhHHHHHHHhhccc-CCCceEEEEe-cc-----------------cc----------hHHHHHhhccc
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSVV-GIKETLLIVS-HD-----------------GY----------FEEMNKIVDGI 150 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a~-gI~~~LLIfS-HD-----------------~~----------~~eiN~lv~sI 150 (408)
..-|+|.|+.+-.-|+.||+..+.-. .+ +..+|+| || ++ .+++.++++++
T Consensus 70 ~~riavlvSg~g~nl~~ll~~~~~g~l~~-eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~ 148 (268)
T PLN02828 70 KYKIAVLASKQDHCLIDLLHRWQDGRLPV-DITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGT 148 (268)
T ss_pred CcEEEEEEcCCChhHHHHHHhhhcCCCCc-eEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcC
Confidence 34678889999999999999876543 23 3444444 53 11 13566677778
Q ss_pred cc---ceeEEEeeccCCccCCCCCCCCCCCcccchhhHhhhcCCC-CCCCCCCccccccccchhHHHH
Q 048409 151 KF---CQVKQIYAPYSPHLFSDGFPGVSSNDCKDKDNATEKHCTG-TPDQYGNHRSSKIVSLKHHWWW 214 (408)
Q Consensus 151 dF---CrV~QIF~PyS~ql~P~~FPG~dP~DCp~K~~A~~~~C~n-~PD~yGhyReak~tq~KHHWWW 214 (408)
|+ +..|||.-|-=++. || -+|.| ||..--.||-++ -|||=+
T Consensus 149 DliVLAgym~IL~~~~l~~----~~---------------~riINIHpSlLP~f~Ga~----p~~~Ai 193 (268)
T PLN02828 149 DFLVLARYMQILSGNFLKG----YG---------------KDIINIHHGLLPSFKGGN----PSKQAF 193 (268)
T ss_pred CEEEEeeehHhCCHHHHhh----cc---------------CCEEEecCccCCCCCCCc----HHHHHH
Confidence 87 57788776533332 22 36888 888888888765 355544
No 69
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=29.90 E-value=96 Score=27.62 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=35.5
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
+|+++......-.+.+-++|- +.++|+.|.++ ||++.+++..|. .+++.+.+..
T Consensus 11 R~~~~t~~~pK~ll~i~g~pl-i~~~l~~l~~~-g~~~v~vv~~~~--~~~i~~~~~~ 64 (223)
T cd06915 11 RLRSVVKDLPKPLAPVAGRPF-LEYLLEYLARQ-GISRIVLSVGYL--AEQIEEYFGD 64 (223)
T ss_pred ccCcccCCCCccccEECCcch-HHHHHHHHHHC-CCCEEEEEcccC--HHHHHHHHcC
Confidence 444443333344556678864 89999999987 799887776543 5666666653
No 70
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=29.53 E-value=53 Score=25.60 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=25.7
Q ss_pred ceEEEEEEecchhhHHHHHHHhhcccCCCce
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSVVGIKET 130 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~ 130 (408)
.+.+-|.|.++ +-|..+++.|++.+||.++
T Consensus 49 ~~~l~v~V~d~-~~L~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 49 RITLTVEVKDL-EHLNQIIRKLRQIPGVISV 78 (80)
T ss_dssp EEEEEEEESSH-HHHHHHHHHHCTSTTEEEE
T ss_pred EEEEEEEECCH-HHHHHHHHHHHCCCCeeEE
Confidence 67788899876 7899999999999998654
No 71
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=29.24 E-value=1e+02 Score=28.15 Aligned_cols=54 Identities=17% Similarity=0.362 Sum_probs=36.9
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
+|+++......-.+.+-.| .-+.++|++|.++ ||++..+|+.+. .+++.+.+++
T Consensus 11 Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~-gi~~i~vv~~~~--~~~~~~~~~~ 64 (229)
T cd02523 11 RLRPLTEDRPKCLLEINGK-PLLERQIETLKEA-GIDDIVIVTGYK--KEQIEELLKK 64 (229)
T ss_pred ccchhhCCCCceeeeECCE-EHHHHHHHHHHHC-CCceEEEEeccC--HHHHHHHHhc
Confidence 3444433333445666677 5688999999998 999999888873 4666666653
No 72
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=29.20 E-value=17 Score=26.80 Aligned_cols=16 Identities=38% Similarity=1.032 Sum_probs=14.7
Q ss_pred cchHHHHHhhcccccc
Q 048409 138 GYFEEMNKIVDGIKFC 153 (408)
Q Consensus 138 ~~~~eiN~lv~sIdFC 153 (408)
.|+++|.+-+++|+||
T Consensus 11 ryfddiqkwirnit~c 26 (40)
T PF13124_consen 11 RYFDDIQKWIRNITFC 26 (40)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4789999999999999
No 73
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=29.15 E-value=5.2e+02 Score=28.15 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=34.6
Q ss_pred CCceEEEEEEecchhhHHHHHHHh-hcccCCCceEEEEecccchHHHHHhhcc
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESL-SSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL-~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
.+.+.|+|=.||=.+-+..+|+|+ ++.+. .+--+||-=|.-+++-.+.++.
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY-~~~eIiVv~d~ndd~T~~~v~~ 116 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLDY-ENYRIFVGTYPNDPATLREVDR 116 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCCC-CCeEEEEEECCCChhHHHHHHH
Confidence 457889999999999999999985 66655 4433444335555555555554
No 74
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.60 E-value=1.1e+02 Score=22.05 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=26.1
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCceEEE
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLI 133 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLI 133 (408)
+.-.++|-+++. -+..+++.|++.+||.++-+|
T Consensus 39 ~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 39 DQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 344566788887 688999999999999887653
No 75
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=26.33 E-value=4.1e+02 Score=26.66 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=23.9
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcc
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSV 124 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a 124 (408)
++.+-|||=++|.-+++..+|+++.+.
T Consensus 69 ~~~isVVIP~yNe~~~i~~~L~~l~~~ 95 (333)
T PTZ00260 69 DVDLSIVIPAYNEEDRLPKMLKETIKY 95 (333)
T ss_pred CeEEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 568899999999999999999998753
No 76
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=25.82 E-value=1.9e+02 Score=27.02 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=21.3
Q ss_pred EEEEEecch-hhHHHHHHHhhcccCC
Q 048409 103 IVLYVHNRP-QYLKVVVESLSSVVGI 127 (408)
Q Consensus 103 iVIQVHnR~-~YLr~Li~SL~~a~gI 127 (408)
|||=+||-. .++...|+|+.+..-=
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~ 26 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYP 26 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHH
Confidence 477799995 8999999999888764
No 77
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=25.81 E-value=81 Score=30.04 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=33.7
Q ss_pred ceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhc
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~ 148 (408)
.....+-|=+|| -+.++|++|.++ ||++..||+.|.. +.+.+.+.
T Consensus 20 ~pK~llpv~g~p-ii~~~l~~l~~~-gi~~i~iv~~~~~--~~i~~~~~ 64 (254)
T TIGR02623 20 RPKPMVEIGGKP-ILWHIMKIYSHH-GINDFIICCGYKG--YVIKEYFA 64 (254)
T ss_pred CCcceeEECCEE-HHHHHHHHHHHC-CCCEEEEEcCCCH--HHHHHHHH
Confidence 334466678999 789999999987 9999999998753 44444444
No 78
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=24.98 E-value=1.4e+02 Score=28.15 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=33.8
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEeccc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDG 138 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~ 138 (408)
++.++......-.+-|..| .-+.+.|++|+++ ||++.++|+.|..
T Consensus 13 Rl~plt~~~pK~llpv~gk-pli~~~l~~l~~~-gi~~i~iv~~~~~ 57 (267)
T cd02541 13 RFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAA-GIEDIIIVTGRGK 57 (267)
T ss_pred cCCCcccCCCceeeEECCE-EHHHHHHHHHHHC-CCCEEEEEeCCch
Confidence 4445544455556778888 6788999999985 9999998888753
No 79
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=24.96 E-value=1.3e+02 Score=27.38 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=38.7
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
+|.++......-.+.+-.| .-+.+.|++|+++ ||++..++..+ ..+++.+.+.+
T Consensus 12 Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~-gi~~i~iv~~~--~~~~i~~~~~~ 65 (221)
T cd06422 12 RMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAA-GIRRIVVNTHH--LADQIEAHLGD 65 (221)
T ss_pred ccccccCCCCCceeeECCE-EHHHHHHHHHHHC-CCCEEEEEccC--CHHHHHHHHhc
Confidence 4555555455556677788 7889999999997 89998877654 35666666654
No 80
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=24.04 E-value=1.7e+02 Score=26.90 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=36.6
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
+|.++..+..--.+-|-+| .-+.+.|+.|+++ |+++..+|+.++. .+++...+++
T Consensus 13 R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~-g~~~iivv~~~~~-~~~i~~~l~~ 67 (214)
T cd04198 13 RLYPLTDNIPKALLPVANK-PMIWYPLDWLEKA-GFEDVIVVVPEEE-QAEISTYLRS 67 (214)
T ss_pred cCCccccCCCcccCEECCe-eHHHHHHHHHHHC-CCCeEEEEECHHH-HHHHHHHHHh
Confidence 4444443333345566788 4577899999995 9999999987642 3456666654
No 81
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=23.77 E-value=89 Score=27.58 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.7
Q ss_pred EEEEEecchhhHHHHHHHhhcccC
Q 048409 103 IVLYVHNRPQYLKVVVESLSSVVG 126 (408)
Q Consensus 103 iVIQVHnR~~YLr~Li~SL~~a~g 126 (408)
|||=++|++.+|..+|+||.+..-
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~ 24 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK 24 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc
Confidence 466699999999999999998664
No 82
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=23.46 E-value=1.8e+02 Score=32.62 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=34.9
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEe
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVS 135 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfS 135 (408)
...+.+++|--+|.+-|+.+|.-+++++...+.++|-+
T Consensus 442 ~qgFTlim~TYdR~d~L~k~v~~ys~vPsL~kIlVVWN 479 (691)
T KOG1022|consen 442 SQGFTLIMLTYDRVDLLKKLVKHYSRVPSLKKILVVWN 479 (691)
T ss_pred ccceeeeeehHHHHHHHHHHHHHHhhCCCcceEEEEec
Confidence 35788999999999999999999999999999999966
No 83
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=23.39 E-value=95 Score=28.61 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=37.5
Q ss_pred CCCCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhc
Q 048409 92 LFPNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVD 148 (408)
Q Consensus 92 ~F~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~ 148 (408)
+|+++..+...-.+.+.+|| -+.++|++|.++ ||+++.+|+.|.. +++.+.++
T Consensus 13 R~~~lt~~~pK~llpv~g~p-li~~~l~~l~~~-g~~~v~iv~~~~~--~~~~~~l~ 65 (233)
T cd06425 13 RLRPLTLTVPKPLVEFCNKP-MIEHQIEALAKA-GVKEIILAVNYRP--EDMVPFLK 65 (233)
T ss_pred ccCccccCCCCccCeECCcc-hHHHHHHHHHHC-CCcEEEEEeeeCH--HHHHHHHh
Confidence 45555555555577788995 689999999997 8999888887653 44444444
No 84
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=23.30 E-value=1.2e+02 Score=24.54 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=16.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH
Q 048409 14 ASRRLLSIVSVTVLGVLLLIFL 35 (408)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (408)
..-|++++++..++|++++.|+
T Consensus 15 ~~~r~~~~~~a~~lgl~~ly~v 36 (60)
T TIGR02459 15 SAARLAAALVAALLGLFLVYFV 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3348888888888888777664
No 85
>PRK04435 hypothetical protein; Provisional
Probab=23.25 E-value=1.2e+02 Score=27.42 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=29.7
Q ss_pred ceEEEEEEecchhhHHHHHHHhhcccCCCceEEE
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLI 133 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLI 133 (408)
.+.+.|.+.++..-|..|++.|++++||.++-||
T Consensus 111 ~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~ 144 (147)
T PRK04435 111 NVTISIDTSSMEGDIDELLEKLRNLDGVEKVELI 144 (147)
T ss_pred EEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4677888888877899999999999999988776
No 86
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=22.78 E-value=1.1e+02 Score=35.82 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=42.4
Q ss_pred eEEEEecccchH-----HHHHhhcccc-c-ceeEEEeeccCCccCCCCCCCCCCCcccc----hhhHhhhcCCCCCCCCC
Q 048409 130 TLLIVSHDGYFE-----EMNKIVDGIK-F-CQVKQIYAPYSPHLFSDGFPGVSSNDCKD----KDNATEKHCTGTPDQYG 198 (408)
Q Consensus 130 ~LLIfSHD~~~~-----eiN~lv~sId-F-CrV~QIF~PyS~ql~P~~FPG~dP~DCp~----K~~A~~~~C~n~PD~yG 198 (408)
+++|||-+|-+. |+-.+++.-+ . =.|++||| ++||.|-.. =.+|.+..|.+.
T Consensus 69 ~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy------------~v~p~~v~~~~g~f~~~f~~~~~~~----- 131 (1153)
T PLN03210 69 AVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFY------------GLDPSHVRKQTGDFGEAFEKTCQNK----- 131 (1153)
T ss_pred EEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEe------------cccHHHHhhccchHHHHHHHHhccc-----
Confidence 789999998764 4444443211 0 14999999 788888763 245555556531
Q ss_pred CccccccccchhHHHHHhhhhh
Q 048409 199 NHRSSKIVSLKHHWWWMMNTVW 220 (408)
Q Consensus 199 hyReak~tq~KHHWWWk~n~Vf 220 (408)
-...+..|--.+..|-
T Consensus 132 ------~~~~~~~w~~al~~~~ 147 (1153)
T PLN03210 132 ------TEDEKIQWKQALTDVA 147 (1153)
T ss_pred ------chhHHHHHHHHHHHHh
Confidence 1234678888887763
No 87
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.40 E-value=8.1e+02 Score=24.32 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=36.4
Q ss_pred CCceEEEEEEecchh-hHHHHHHHhhcccCCCceEEEEecccchHHHHHhhccc
Q 048409 98 KDHIVIVLYVHNRPQ-YLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGI 150 (408)
Q Consensus 98 ~~~iviVIQVHnR~~-YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sI 150 (408)
.+.+-|+|=++|=+. .++..++|+.+.+.-. --+|+--|.-+++..++++..
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~-~evivv~d~~~d~~~~~~~~~ 105 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPR-YEVIVVDDGSTDETYEILEEL 105 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCC-ceEEEECCCCChhHHHHHHHH
Confidence 357788888999888 9999999999998766 223344455555555555543
No 88
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=20.91 E-value=1.7e+02 Score=21.89 Aligned_cols=38 Identities=18% Similarity=0.397 Sum_probs=25.1
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCCC--ceEEEEe
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGIK--ETLLIVS 135 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~--~~LLIfS 135 (408)
..++++.+.+.+-.++-+.+-+-|++.+||. ++.+|++
T Consensus 34 ~~d~~~~v~~~d~~~l~~~i~~~l~~~~gV~~~~t~ivl~ 73 (74)
T PF01037_consen 34 EYDLILKVRARDMEELEEFIREKLRSIPGVRRTETSIVLS 73 (74)
T ss_dssp SSSEEEEEEESSHHHHHHHHHHTHHTSTTEEEEEEEEEEE
T ss_pred CCCEEEEEEECCHHHHHHHHHHHhhcCCCEEEEEEEEEEE
Confidence 3567777777666666555555588888887 4555543
No 89
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=20.64 E-value=1.9e+02 Score=24.46 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=12.4
Q ss_pred EecchhhHHHHHHHhhcccCC
Q 048409 107 VHNRPQYLKVVVESLSSVVGI 127 (408)
Q Consensus 107 VHnR~~YLr~Li~SL~~a~gI 127 (408)
||-||+++..+.+.|.+.+|.
T Consensus 12 V~~~Pe~~~~V~~~l~~ipg~ 32 (87)
T PRK10553 12 VQAKSERISDISTQLNAFPGC 32 (87)
T ss_pred EEeChHHHHHHHHHHHcCCCc
Confidence 455666666666666666554
No 90
>PRK13936 phosphoheptose isomerase; Provisional
Probab=20.44 E-value=1.9e+02 Score=26.99 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=32.3
Q ss_pred EecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcccc
Q 048409 107 VHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGIK 151 (408)
Q Consensus 107 VHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sId 151 (408)
+.+.+.+-....+.++....=++++++||+.+.++++-++++...
T Consensus 91 ~~~d~~~~~~~~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak 135 (197)
T PRK13936 91 IANDYSYNEVFSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAH 135 (197)
T ss_pred HhhcCCHHHHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHH
Confidence 445555555555666655566799999999999998888776543
No 91
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.19 E-value=1.2e+02 Score=26.11 Aligned_cols=9 Identities=56% Similarity=0.726 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 048409 26 VLGVLLLIF 34 (408)
Q Consensus 26 ~~~~~~~~~ 34 (408)
+|++||||+
T Consensus 12 ~LA~lLlis 20 (95)
T PF07172_consen 12 LLAALLLIS 20 (95)
T ss_pred HHHHHHHHH
Confidence 333434333
No 92
>PRK10063 putative glycosyl transferase; Provisional
Probab=20.13 E-value=2.3e+02 Score=26.96 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=29.6
Q ss_pred ceEEEEEEecchhhHHHHHHHhhcc---cCCCceEEEE---ecccchHHHH
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSV---VGIKETLLIV---SHDGYFEEMN 144 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a---~gI~~~LLIf---SHD~~~~eiN 144 (408)
.+-|||=++|..++|...|+||.+. .+.+--+||+ |.|.-.+-+.
T Consensus 2 ~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~ 52 (248)
T PRK10063 2 LLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLE 52 (248)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHH
Confidence 3567777999999999999999753 2333334444 5555433333
Done!