Query 048409
Match_columns 408
No_of_seqs 94 out of 96
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 16:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fo8_A Alpha-1,3-mannosyl-glyc 99.6 2.1E-15 7.3E-20 148.5 9.3 179 100-321 3-188 (343)
2 1qg8_A Protein (spore coat pol 96.6 0.048 1.6E-06 47.9 13.8 50 100-150 2-51 (255)
3 3bcv_A Putative glycosyltransf 95.2 0.19 6.5E-06 43.5 11.2 51 98-149 4-54 (240)
4 2z86_A Chondroitin synthase; G 92.8 1.4 4.8E-05 44.6 13.6 53 98-150 92-144 (625)
5 2z86_A Chondroitin synthase; G 87.0 4.1 0.00014 41.2 11.2 50 99-149 375-424 (625)
6 1xhb_A Polypeptide N-acetylgal 85.4 11 0.00038 36.7 13.0 29 99-127 29-58 (472)
7 4fix_A UDP-galactofuranosyl tr 83.0 3 0.0001 44.1 8.3 36 292-327 368-403 (657)
8 1omz_A Alpha-1,4-N-acetylhexos 81.6 1.2 4.1E-05 43.5 4.4 45 94-138 23-67 (293)
9 2ffu_A Ppgalnact-2, polypeptid 68.4 37 0.0013 33.5 11.1 42 98-139 65-108 (501)
10 4hg6_A Cellulose synthase subu 58.0 1.1E+02 0.0038 32.6 13.2 43 99-141 140-184 (802)
11 3ckj_A Putative uncharacterize 54.4 18 0.00062 33.8 5.7 52 98-149 47-98 (329)
12 2jsx_A Protein NAPD; TAT, proo 45.3 11 0.00037 30.8 2.3 38 98-136 41-78 (95)
13 2lk9_A Bone marrow stromal ant 44.5 14 0.00049 25.8 2.4 23 17-39 10-32 (35)
14 1tzf_A Glucose-1-phosphate cyt 38.4 11 0.00039 33.2 1.5 42 104-149 27-68 (259)
15 2fy7_A Beta-1,4-galactosyltran 31.8 45 0.0015 31.4 4.6 39 98-137 64-105 (287)
16 2d7i_A Polypeptide N-acetylgal 29.6 1E+02 0.0035 31.3 7.1 53 98-150 111-170 (570)
17 4h1h_A LMO1638 protein; MCCF-l 28.0 44 0.0015 32.1 3.9 30 227-258 221-250 (327)
18 1spf_A Pulmonary surfactant-as 22.6 85 0.0029 21.8 3.3 20 15-34 10-29 (35)
No 1
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=99.59 E-value=2.1e-15 Score=148.53 Aligned_cols=179 Identities=16% Similarity=0.278 Sum_probs=120.1
Q ss_pred ceEEEEEEecchhhHHHHHHHhhccc-CCCceEEEEecccchHHHHHhhcccccceeEEEeeccCCccCCCCCCCCCCCc
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSVV-GIKETLLIVSHDGYFEEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGVSSND 178 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a~-gI~~~LLIfSHD~~~~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~dP~D 178 (408)
.++|||.++|||+ |+.+|+||.+++ +++..++|||+|+..+|..++|++... ++.-|.+| .....-
T Consensus 3 ~~pViI~~yNRp~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~-~I~~~~~~-----------d~~~~~ 69 (343)
T 1fo8_A 3 VIPILVIACDRST-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGS-AVTHIRQP-----------DLSNIA 69 (343)
T ss_dssp CCCEEEEESSCTT-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGG-GSEEEECS-----------CCCCCC
T ss_pred cccEEEEECCcHH-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCC-ceEEEEcC-----------Cccccc
Confidence 3678999999999 999999999997 577899999999999999999998542 22222222 111110
Q ss_pred ccchhhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccceEEEEccCcccchhHHHHHHHHHHhCC
Q 048409 179 CKDKDNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILTELKP 258 (408)
Q Consensus 179 Cp~K~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~~lk~ 258 (408)
. .+..+||. | +-++.+|++|.+|.||+.+. .+.|||||||..++|||+..+..+..+-.
T Consensus 70 ~----~~~N~g~~------~------y~~ia~h~~~al~~vf~~~~-----~~~vIiLEDDl~~spdF~~y~~~~l~~y~ 128 (343)
T 1fo8_A 70 V----QPDHRKFQ------G------YYKIARHYRWALGQIFHNFN-----YPAAVVVEDDLEVAPDFFEYFQATYPLLK 128 (343)
T ss_dssp C----CTTCGGGH------H------HHHHHHHHHHHHHHHHTTSC-----CSEEEEEETTEEECTTHHHHHHHHHHHHH
T ss_pred c----chhhcCcc------c------chhHhHHHHHHHHHHHHhcc-----CCEEEEEcCCCeECHHHHHHHHHHHHHhh
Confidence 0 11122332 1 22678999999999998653 57899999999999999998876665432
Q ss_pred CCCCCcceeccCCccccc---C---CCCceeeeeeccCceEEEEeHHHHHHHHhhccccCccccCChhh
Q 048409 259 KKCPDCYAANLAPSDVNS---R---GEGGSILIAERMGNVGYTFNRTVWRKIHRKARKFCFFDDYNWDI 321 (408)
Q Consensus 259 ~~cp~C~~l~Lg~~d~~~---~---g~~w~s~v~~~~hNmGmAfnR~~W~kI~~c~~~FC~yDDYNWDw 321 (408)
. ++.+..++.+..+. . .++-...-+..++.+|.|+.|++|+++... +++ ..||-
T Consensus 129 ~---D~~I~~ISa~n~~g~~~~~~~~~~~~lyrs~~f~~wGWa~wr~~W~e~~~~---wp~---~~Wd~ 188 (343)
T 1fo8_A 129 A---DPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLAELWAELEPK---WPK---AFWDD 188 (343)
T ss_dssp H---CTTEEEEESCCTTCBGGGSCTTCTTCEEEESSCCCSSEEEEHHHHHHHGGG---CCS---SCHHH
T ss_pred c---CCcEEEEecccCccccccccccCcceEEeecCCCchhhhhcHHHHHHHhhh---cch---hHHHH
Confidence 2 12233333333221 1 111111112347899999999999988763 554 46773
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=96.59 E-value=0.048 Score=47.86 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=40.2
Q ss_pred ceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhccc
Q 048409 100 HIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGI 150 (408)
Q Consensus 100 ~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sI 150 (408)
.+-|||=++||.+||+..|+||.+...- ..-+||.-|.-.++..+++++.
T Consensus 2 ~vSViIp~yn~~~~l~~~l~Sl~~q~~~-~~eiivvDd~S~d~t~~~~~~~ 51 (255)
T 1qg8_A 2 KVSVIMTSYNKSDYVAKSISSILSQTFS-DFELFIMDDNSNEETLNVIRPF 51 (255)
T ss_dssp CEEEEEEESSCTTTHHHHHHHHHTCSCC-CEEEEEEECSCCHHHHHHHGGG
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHhccCC-ceEEEEEECCCCchHHHHHHHH
Confidence 4678888999999999999999886643 5567777788777777777765
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=95.22 E-value=0.19 Score=43.47 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=36.6
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
.+.+-|||=++|+.+||+..|+||.+...- ..-+|+.-|.-.++..++++.
T Consensus 4 ~p~vsViIp~yn~~~~l~~~l~Sl~~q~~~-~~eiIvvDd~S~d~t~~~~~~ 54 (240)
T 3bcv_A 4 IPKVSVIVPIYNVEKYLDQCVQALLAQTLS-DIEIILIDDESPDNCPKICDD 54 (240)
T ss_dssp CCSEEEEEEESSCTTTHHHHHHHHHTCSSS-SEEEEEEECCCSSSHHHHHHH
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHhCcCC-CeEEEEEECCCCcCHHHHHHH
Confidence 356888899999999999999999876643 455666666555544444443
No 4
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=92.85 E-value=1.4 Score=44.60 Aligned_cols=53 Identities=28% Similarity=0.378 Sum_probs=40.3
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhccc
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGI 150 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sI 150 (408)
.+.+-|||=++|++++|..+|+||.+...-...-+||.-|.-.++..++++..
T Consensus 92 ~p~vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~ 144 (625)
T 2z86_A 92 IDGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREF 144 (625)
T ss_dssp CCCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTT
T ss_pred CCcEEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHh
Confidence 35788999999999999999999998753335556666677666666666654
No 5
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=87.05 E-value=4.1 Score=41.22 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=35.6
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
+.+.|||=++|+.+||+..|+|+.+...- ..-+||.-|.-.++.-++++.
T Consensus 375 ~~vsiii~~yn~~~~l~~~l~s~~~q~~~-~~eiivvdd~S~d~t~~~~~~ 424 (625)
T 2z86_A 375 PLVSIYIPAYNCSKYIVRCVESALNQTIT-DLEVCICDDGSTDDTLRILQE 424 (625)
T ss_dssp CSEEEEEEESSCTTTHHHHHHHHHSSSCC-SEEEEEEEESCSSSHHHHHHH
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHhCcCC-CeEEEEEECcCChhHHHHHHH
Confidence 57889999999999999999999877653 344555555544444444443
No 6
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=85.45 E-value=11 Score=36.68 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=24.9
Q ss_pred CceEEEEEEecch-hhHHHHHHHhhcccCC
Q 048409 99 DHIVIVLYVHNRP-QYLKVVVESLSSVVGI 127 (408)
Q Consensus 99 ~~iviVIQVHnR~-~YLr~Li~SL~~a~gI 127 (408)
+.+-|||=+||+. ++|..+|+||.+...-
T Consensus 29 p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~ 58 (472)
T 1xhb_A 29 PTTSVVIVFHNEAWSTLLRTVHSVINRSPR 58 (472)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHSSCG
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHhcCcH
Confidence 5678888899999 9999999999887643
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=82.99 E-value=3 Score=44.06 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=30.4
Q ss_pred eEEEEeHHHHHHHHhhccccCccccCChhhhhhhhc
Q 048409 292 VGYTFNRTVWRKIHRKARKFCFFDDYNWDITMWATG 327 (408)
Q Consensus 292 mGmAfnR~~W~kI~~c~~~FC~yDDYNWDwSL~~~G 327 (408)
-+|+|.|+++++|-.--+.|..++|..|-+-+...|
T Consensus 368 ~~~lirr~v~~~vGgfd~~F~~~ED~Dl~lR~~~~G 403 (657)
T 4fix_A 368 WTCMIPRQVAEELGQPLPLFIKWDDADYGLRAAEHG 403 (657)
T ss_dssp TEEEEEHHHHHHHCSCCSCSSSSHHHHHHHHHHHTT
T ss_pred hHhHhhHHHHHHhCCChhHhccCcHHHHHHHHHHcC
Confidence 368999999999976657889999998888887665
No 8
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=81.59 E-value=1.2 Score=43.45 Aligned_cols=45 Identities=16% Similarity=0.314 Sum_probs=38.7
Q ss_pred CCCCCCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEeccc
Q 048409 94 PNLAKDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDG 138 (408)
Q Consensus 94 ~~l~~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~ 138 (408)
|....+.+.+||+.++|++-|+.+|..+++.+++++.++|=+-..
T Consensus 23 g~~~~~~FTvvi~ty~R~~~L~~lv~~~~~~~~v~~IvVvWn~~~ 67 (293)
T 1omz_A 23 SKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVG 67 (293)
T ss_dssp ---CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTT
T ss_pred CCCCCCceEEEEEeecccHHHHHHHHHHhcCCCCCeEEEEeCCCC
Confidence 444567899999999999999999999999999999999988764
No 9
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=68.35 E-value=37 Score=33.46 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=30.2
Q ss_pred CCceEEEEEEecchh-hHHHHHHHhhcccCCCc-eEEEEecccc
Q 048409 98 KDHIVIVLYVHNRPQ-YLKVVVESLSSVVGIKE-TLLIVSHDGY 139 (408)
Q Consensus 98 ~~~iviVIQVHnR~~-YLr~Li~SL~~a~gI~~-~LLIfSHD~~ 139 (408)
.+.+-|||=+||+.+ +|...|+||.+...-.. .-|||--|.-
T Consensus 65 ~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS 108 (501)
T 2ffu_A 65 LPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYS 108 (501)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSC
T ss_pred CCCEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCC
Confidence 456888999999997 99999999987765431 2344444443
No 10
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=58.04 E-value=1.1e+02 Score=32.65 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=33.2
Q ss_pred CceEEEEEEecchhhH-HHHHHHhhcccCCC-ceEEEEecccchH
Q 048409 99 DHIVIVLYVHNRPQYL-KVVVESLSSVVGIK-ETLLIVSHDGYFE 141 (408)
Q Consensus 99 ~~iviVIQVHnR~~YL-r~Li~SL~~a~gI~-~~LLIfSHD~~~~ 141 (408)
+.+.|||=++|...++ +..|+|+.+...-. +.-+|+.=|+-.+
T Consensus 140 P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD 184 (802)
T 4hg6_A 140 PTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTD 184 (802)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHH
T ss_pred CcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCc
Confidence 5788999999999776 99999998876644 3567777776543
No 11
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=54.35 E-value=18 Score=33.79 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=36.1
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
.+.+-|||=++|+.++|+..|+||.+...-...-|||.-|.-.++.-+++++
T Consensus 47 ~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~ 98 (329)
T 3ckj_A 47 GRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVA 98 (329)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHH
T ss_pred CCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHH
Confidence 3578899999999999999999999876222233455455544455555554
No 12
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=45.29 E-value=11 Score=30.82 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=28.3
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEec
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSH 136 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSH 136 (408)
..++|++|..-+.-+-.+ .|+.+++.+||-.|-||++|
T Consensus 41 ~GkiVV~iEa~~~~~l~~-~i~~I~~i~GVlst~lvy~~ 78 (95)
T 2jsx_A 41 SGQLIVVVEAEDSETLIQ-TIESVRNVEGVLAVSLVYHQ 78 (95)
T ss_dssp TTEEEEEEEESSHHHHHH-HHHHHTTSTTEEEEEESSCC
T ss_pred CCCEEEEEEeCCHHHHHH-HHHHHhcCCCccEEeEEEEE
Confidence 457888888777666655 55888888888888888776
No 13
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=44.48 E-value=14 Score=25.76 Aligned_cols=23 Identities=30% Similarity=0.702 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcC
Q 048409 17 RLLSIVSVTVLGVLLLIFLLRTN 39 (408)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~ 39 (408)
..+.++.++.|||++.+|..++.
T Consensus 10 Gvl~LLviV~LgV~LI~f~~kAn 32 (35)
T 2lk9_A 10 GILVLLIIVILGVPLIIFTIKKK 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHhcchheEEeeecc
Confidence 45667777789999999988854
No 14
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=38.35 E-value=11 Score=33.22 Aligned_cols=42 Identities=17% Similarity=0.304 Sum_probs=32.8
Q ss_pred EEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcc
Q 048409 104 VLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDG 149 (408)
Q Consensus 104 VIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~s 149 (408)
.+.+..|| -+.+.|+.|.++ ||++..++.+|+. ++|.+.+++
T Consensus 27 l~~i~gkp-li~~~l~~l~~~-g~~~i~vv~~~~~--~~i~~~~~~ 68 (259)
T 1tzf_A 27 MVEIGGKP-ILWHIMKMYSVH-GIKDFIICCGYKG--YVIKEYFAN 68 (259)
T ss_dssp GCEETTEE-HHHHHHHHHHHT-TCCEEEEEECTTH--HHHHHHHHT
T ss_pred ccEECCEE-HHHHHHHHHHHC-CCCEEEEEcccCH--HHHHHHHhh
Confidence 34457888 789999999988 6999988888774 677776654
No 15
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=31.81 E-value=45 Score=31.37 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCceEEEEEEecchhhHHHHHHHhh---cccCCCceEEEEecc
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLS---SVVGIKETLLIVSHD 137 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~---~a~gI~~~LLIfSHD 137 (408)
.+.+-|||=++||.++|+.+|+||. +.... ..-+||-+|
T Consensus 64 ~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~-~~EIiVVdd 105 (287)
T 2fy7_A 64 PHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQL-DYGIYVINQ 105 (287)
T ss_dssp SCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTC-EEEEEEEEE
T ss_pred CCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcC-CceEEEEEe
Confidence 3578899999999999999999998 34443 344555565
No 16
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=29.60 E-value=1e+02 Score=31.32 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=35.5
Q ss_pred CCceEEEEEEecch-hhHHHHHHHhhcccCCC---ceEEEE--ecccc-hHHHHHhhccc
Q 048409 98 KDHIVIVLYVHNRP-QYLKVVVESLSSVVGIK---ETLLIV--SHDGY-FEEMNKIVDGI 150 (408)
Q Consensus 98 ~~~iviVIQVHnR~-~YLr~Li~SL~~a~gI~---~~LLIf--SHD~~-~~eiN~lv~sI 150 (408)
.+.+-|||=+||+. ++|+..|+||.+...-. +.+||= |-|.- .+.+.++++..
T Consensus 111 ~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~ 170 (570)
T 2d7i_A 111 LPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALF 170 (570)
T ss_dssp CCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTS
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhC
Confidence 35788899999997 99999999998876543 333331 33444 44556665543
No 17
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.01 E-value=44 Score=32.14 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=20.2
Q ss_pred cCccceEEEEccCcccchhHHHHHHHHHHhCC
Q 048409 227 RGHTGHILFIEEDHFILPNAYRNLQILTELKP 258 (408)
Q Consensus 227 r~~~G~VlFLEEDHyvapDf~~vl~~m~~lk~ 258 (408)
.+.+|-|||||||.--. -|++=+.|.+++.
T Consensus 221 p~~~g~ILflE~d~~e~--p~~idR~L~qL~~ 250 (327)
T 4h1h_A 221 PNLAGTILFIEDDFMTI--PETFDRDLESLLS 250 (327)
T ss_dssp CCCTTEEEEEECCTTCC--HHHHHHHHHHHTT
T ss_pred cCCCCCEEEEEeccCCC--HHHHHHHHHHHHh
Confidence 34679999999875443 3555556677764
No 18
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=22.63 E-value=85 Score=21.78 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=13.3
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 048409 15 SRRLLSIVSVTVLGVLLLIF 34 (408)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~ 34 (408)
+.|++.++.|+++.|+.++.
T Consensus 10 lKrLlivVvVvVlvVvVivG 29 (35)
T 1spf_A 10 LKRLLVVVVVVVLVVVVIVG 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hheEEEEEeeehhhHHHHHH
Confidence 45777777777766665543
Done!