Query 048409
Match_columns 408
No_of_seqs 94 out of 96
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 16:01:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048409.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048409hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fo8a_ c.68.1.10 (A:) N-acety 99.2 7.8E-11 5.7E-15 114.6 14.6 180 101-325 4-190 (343)
2 d1omza_ c.68.1.15 (A:) Alpha-1 97.0 0.00089 6.5E-08 53.8 7.5 50 99-148 3-54 (265)
3 d1qg8a_ c.68.1.1 (A:) Spore co 95.5 0.17 1.2E-05 42.5 14.2 56 99-155 1-57 (255)
4 d1xhba2 c.68.1.17 (A:95-422) P 86.2 2.3 0.00017 36.8 10.4 27 99-125 22-49 (328)
5 d2f06a1 d.58.18.11 (A:71-141) 39.3 21 0.0015 25.5 4.8 34 102-136 1-35 (71)
6 d1ll2a_ c.68.1.14 (A:) Glycoge 30.2 45 0.0033 27.7 6.3 99 110-250 12-115 (263)
7 d1i1ga2 d.58.4.2 (A:62-141) Lp 22.0 27 0.0019 24.5 2.7 33 98-130 38-70 (80)
8 d2cg4a2 d.58.4.2 (A:67-152) Re 21.9 24 0.0018 25.4 2.5 37 98-134 38-76 (86)
9 d1ydya1 c.1.18.3 (A:29-356) Gl 21.0 23 0.0017 29.6 2.6 34 148-181 85-119 (328)
10 d1zl0a1 c.8.10.1 (A:170-307) L 20.0 25 0.0018 28.1 2.4 27 229-258 40-66 (138)
No 1
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=99.20 E-value=7.8e-11 Score=114.58 Aligned_cols=180 Identities=16% Similarity=0.268 Sum_probs=114.1
Q ss_pred eEEEEEEecchhhHHHHHHHhhcc-cCCCceEEEEecccchHHHHHhhcccccceeEEEeeccCCccCCCCCCCCCCCcc
Q 048409 101 IVIVLYVHNRPQYLKVVVESLSSV-VGIKETLLIVSHDGYFEEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGVSSNDC 179 (408)
Q Consensus 101 iviVIQVHnR~~YLr~Li~SL~~a-~gI~~~LLIfSHD~~~~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~dP~DC 179 (408)
++|+|.++||| +|+.+|+||.++ ++++...|+||.|+..+|..+.+++..= ++.-|-.| .+ .+|
T Consensus 4 iPVlv~a~NRP-~l~r~LesLlk~~p~~~~~~I~Vs~DG~~~~~~~~v~~~~~-~v~~I~~~---~~----------~~~ 68 (343)
T d1fo8a_ 4 IPILVIACDRS-TVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGS-AVTHIRQP---DL----------SNI 68 (343)
T ss_dssp CCEEEEESSCT-THHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGG-GSEEEECS---CC----------CCC
T ss_pred ccEEEEEcCHH-HHHHHHHHHHhcCccccCccEEEEecCCchhHHHHHHHHHH-HHHHhcCC---cc----------ccc
Confidence 68999999999 799999999888 5899999999999999888877775431 12212221 11 111
Q ss_pred cchhhHhhhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccccCccceEEEEccCcccchhHHHHHHHHHHhCCC
Q 048409 180 KDKDNATEKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEETRGHTGHILFIEEDHFILPNAYRNLQILTELKPK 259 (408)
Q Consensus 180 p~K~~A~~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~r~~~G~VlFLEEDHyvapDf~~vl~~m~~lk~~ 259 (408)
..+ + ...-++. .--++.|.=|.++.||+... -+.+|+||||-.++|||+..+..+..+-+.
T Consensus 69 ~~~-----------~--~~~k~~~-n~giarhy~~AL~~~F~~~~-----~~~~IiLEDDl~~spdFf~y~~~~l~~~~~ 129 (343)
T d1fo8a_ 69 AVQ-----------P--DHRKFQG-YYKIARHYRWALGQIFHNFN-----YPAAVVVEDDLEVAPDFFEYFQATYPLLKA 129 (343)
T ss_dssp CCC-----------T--TCGGGHH-HHHHHHHHHHHHHHHHTTSC-----CSEEEEEETTEEECTTHHHHHHHHHHHHHH
T ss_pred eec-----------c--hhhcccc-hhHHHHHHHHHHHHHhcccC-----CceEEEEecCceeeHHHHHHHHHHHHHHhc
Confidence 110 0 0000111 22478899999999998642 256999999999999999988766544211
Q ss_pred CCCCcceeccCCcccccC------CCCceeeeeeccCceEEEEeHHHHHHHHhhccccCccccCChhhhhhh
Q 048409 260 KCPDCYAANLAPSDVNSR------GEGGSILIAERMGNVGYTFNRTVWRKIHRKARKFCFFDDYNWDITMWA 325 (408)
Q Consensus 260 ~cp~C~~l~Lg~~d~~~~------g~~w~s~v~~~~hNmGmAfnR~~W~kI~~c~~~FC~yDDYNWDwSL~~ 325 (408)
. +. +...+.+..+.. ..+-...-+..++-+|.|+.|++|++|...- -+|+|..|-
T Consensus 130 D-~~--i~~IS~wNdnG~~~~~~~~~~~~lyrs~~fpg~GW~~~r~~W~el~~kw--------p~~~Wd~w~ 190 (343)
T d1fo8a_ 130 D-PS--LWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLLAELWAELEPKW--------PKAFWDDWM 190 (343)
T ss_dssp C-TT--EEEEESCCTTCBGGGSCTTCTTCEEEESSCCCSSEEEEHHHHHHHGGGC--------CSSCHHHHH
T ss_pred C-CC--EEEEeccccCCCcccccCCCCceEEeecCCCchhhheeHHHHHHhhhcC--------CCCCcHHhh
Confidence 1 11 222223321111 1110000123478899999999999999852 246677773
No 2
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.98 E-value=0.00089 Score=53.78 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=38.7
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCceEEEE--ecccchHHHHHhhc
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIV--SHDGYFEEMNKIVD 148 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIf--SHD~~~~eiN~lv~ 148 (408)
+++.|||-++||+++|+.+|+||.+.+.-.+.++|. |.|--.+++.+...
T Consensus 3 ~~~tvii~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~ 54 (265)
T d1omza_ 3 DSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLG 54 (265)
T ss_dssp TCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTC
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhc
Confidence 467888999999999999999999987766654443 66776777666543
No 3
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=95.52 E-value=0.17 Score=42.49 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=44.2
Q ss_pred CceEEEEEEecchhhHHHHHHHhhcccCCCceEEEEecccchHHHHHhhcccc-ccee
Q 048409 99 DHIVIVLYVHNRPQYLKVVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGIK-FCQV 155 (408)
Q Consensus 99 ~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sId-FCrV 155 (408)
|.+-|||=++|+.+||+..|+|+.+..- .+--+||..|.-.++..++++++. -+++
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~-~~~eiivvdd~S~d~t~~~l~~~~~~~~i 57 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTF-SDFELFIMDDNSNEETLNVIRPFLNDNRV 57 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSC-CCEEEEEEECSCCHHHHHHHGGGGGSTTE
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCC-CCeEEEEEECCCCccHHHHHHHhhhhccc
Confidence 3577888899999999999999887653 346688888988899999988753 3444
No 4
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=86.19 E-value=2.3 Score=36.78 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=22.5
Q ss_pred CceEEEEEEecch-hhHHHHHHHhhccc
Q 048409 99 DHIVIVLYVHNRP-QYLKVVVESLSSVV 125 (408)
Q Consensus 99 ~~iviVIQVHnR~-~YLr~Li~SL~~a~ 125 (408)
|.+-|||=+||+. ++|...|+|+.+..
T Consensus 22 P~vSIIIp~yNe~~~~l~~~l~Si~~qt 49 (328)
T d1xhba2 22 PTTSVVIVFHNEAWSTLLRTVHSVINRS 49 (328)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHHHSS
T ss_pred CCEEEEEeccCCcHHHHHHHHHHHHhcC
Confidence 5678899999984 78999999987764
No 5
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=39.26 E-value=21 Score=25.54 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=26.8
Q ss_pred EEEEEEecchhhHHHHHHHhhcccCCC-ceEEEEec
Q 048409 102 VIVLYVHNRPQYLKVVVESLSSVVGIK-ETLLIVSH 136 (408)
Q Consensus 102 viVIQVHnR~~YLr~Li~SL~~a~gI~-~~LLIfSH 136 (408)
||.|.+.|||--|..+++.|++ .||+ +.+-+|.+
T Consensus 1 ViaV~v~d~pG~L~~v~~~L~~-~~InI~~~y~~~~ 35 (71)
T d2f06a1 1 VVGISCPNVPGALAKVLGFLSA-EGVFIEYMYSFAN 35 (71)
T ss_dssp EEEEEEESSTTHHHHHHHHHHH-TTCCEEEEEEEEE
T ss_pred CEEEEecCCccHHHHHHHHHHH-CCCCEEEEEEEcC
Confidence 6889999999999999999999 4555 44444443
No 6
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=30.16 E-value=45 Score=27.69 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=54.3
Q ss_pred chhhHH---HHHHHhhcccCCCceEEEEecccchHHHHHhhcccccceeEEEeeccCCccCCCCCCCCCCCcccchhhHh
Q 048409 110 RPQYLK---VVVESLSSVVGIKETLLIVSHDGYFEEMNKIVDGIKFCQVKQIYAPYSPHLFSDGFPGVSSNDCKDKDNAT 186 (408)
Q Consensus 110 R~~YLr---~Li~SL~~a~gI~~~LLIfSHD~~~~eiN~lv~sIdFCrV~QIF~PyS~ql~P~~FPG~dP~DCp~K~~A~ 186 (408)
--.|+. .|+.||++.. -.--++|+-.+..+++..+.++.+ ++++..+-+- +.+
T Consensus 12 ~d~Yl~~a~vl~~SL~~~~-~~~~~vvl~~~~i~~~~~~~L~~~-~~~~~~v~~i----------------~~~------ 67 (263)
T d1ll2a_ 12 NDAYAKGALVLGSSLKQHR-TSRRLAVLTTPQVSDTMRKALEIV-FDEVITVDIL----------------DSG------ 67 (263)
T ss_dssp SHHHHHHHHHHHHHHHHTT-CCSEEEEEECTTSCHHHHHHHHHH-CSEEEECCTT----------------STT------
T ss_pred CHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHh-CCcceeEEee----------------cCc------
Confidence 346665 6778888773 333455554555677777777665 5665443221 000
Q ss_pred hhcCCCCCCCCCCccccccccchhHHHHHhhhhhcccccc--cCccceEEEEccCcccchhHHHHH
Q 048409 187 EKHCTGTPDQYGNHRSSKIVSLKHHWWWMMNTVWDGLEET--RGHTGHILFIEEDHFILPNAYRNL 250 (408)
Q Consensus 187 ~~~C~n~PD~yGhyReak~tq~KHHWWWk~n~Vfe~l~~~--r~~~G~VlFLEEDHyvapDf~~vl 250 (408)
........+.||+.. +|-+|.+. ..| ..||+|+-|-.+..|.=+.+
T Consensus 68 --------------~~~~~~~~~~~~~~~---ty~Kl~i~~l~~y-dkvlYLDaD~lv~~~id~Lf 115 (263)
T d1ll2a_ 68 --------------DSAHLTLMKRPELGV---TLTKLHCWSLTQY-SKCVFMDADTLVLANIDDLF 115 (263)
T ss_dssp --------------STTHHHHHHCGGGHH---HHHHGGGGGCTTC-SEEEEECTTEEECSCCGGGG
T ss_pred --------------chhhhhhhccccchh---hhHHHHHhhhccc-ceEEEeCCCEEEecCHHHHh
Confidence 011223334455542 23333322 233 47999999999998864443
No 7
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.00 E-value=27 Score=24.51 Aligned_cols=33 Identities=9% Similarity=0.392 Sum_probs=24.3
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCCCce
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGIKET 130 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~~~ 130 (408)
+.++++.+.+.+.-++-+.+.+.|++.+||.++
T Consensus 38 ~~D~~~~v~~~d~~~l~~~l~~~i~~~~gV~~~ 70 (80)
T d1i1ga2 38 DHMIMAVIWAKDGEDLAEIISNKIGKIEGVTKV 70 (80)
T ss_dssp SSSEEEEEEESSHHHHHHHHHHTTTTSTTEEEE
T ss_pred CCCEEEEEEECCHHHHHHHHHhhhccCCCEEEE
Confidence 456777777777777777777778888887743
No 8
>d2cg4a2 d.58.4.2 (A:67-152) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=21.85 E-value=24 Score=25.39 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCceEEEEEEecchhhHHHHHHHhhcccCCC--ceEEEE
Q 048409 98 KDHIVIVLYVHNRPQYLKVVVESLSSVVGIK--ETLLIV 134 (408)
Q Consensus 98 ~~~iviVIQVHnR~~YLr~Li~SL~~a~gI~--~~LLIf 134 (408)
+.++++.|.+-+-.+|-+.+.+.|++.+||. +|.+++
T Consensus 38 ~~D~i~~v~~~d~~~l~~~i~~~i~~~~gV~~t~T~ivl 76 (86)
T d2cg4a2 38 HYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVL 76 (86)
T ss_dssp SCSEEEEEEESCHHHHHHHHHHTTTTSTTEEEEEEEECS
T ss_pred CceEEEEEEECCHHHHHHHHHHHhhcCCCEeEEEEEEEE
Confidence 3467777777777777777777788888877 344443
No 9
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}
Probab=20.97 E-value=23 Score=29.63 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=23.5
Q ss_pred cccccceeEEEeeccCCccCCCCCCCCCCCc-ccc
Q 048409 148 DGIKFCQVKQIYAPYSPHLFSDGFPGVSSND-CKD 181 (408)
Q Consensus 148 ~sIdFCrV~QIF~PyS~ql~P~~FPG~dP~D-Cp~ 181 (408)
+++++.....+--++..|.||..+|+.+++- .|.
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipt 119 (328)
T d1ydya1 85 KSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHT 119 (328)
T ss_dssp HHSCBCSCEEEETTEEEESSTTSSCTTCSCCCCCB
T ss_pred hccccccccccccccccccccccccccCCCcccCc
Confidence 4456665556666777889999999887753 443
No 10
>d1zl0a1 c.8.10.1 (A:170-307) LD-carboxypeptidase A, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.02 E-value=25 Score=28.06 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=19.9
Q ss_pred ccceEEEEccCcccchhHHHHHHHHHHhCC
Q 048409 229 HTGHILFIEEDHFILPNAYRNLQILTELKP 258 (408)
Q Consensus 229 ~~G~VlFLEEDHyvapDf~~vl~~m~~lk~ 258 (408)
-.|-|||||| +-++.|.+-+.|.+++.
T Consensus 40 ~~g~ILflEd---~~e~~~~idR~L~~L~~ 66 (138)
T d1zl0a1 40 PAGSILVLED---VGEPYYRLERSLWQLLE 66 (138)
T ss_dssp CTTCEEEEEE---ESCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEc---cCCCchHHHHHHHHHHh
Confidence 3689999997 44566777777777765
Done!