BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048410
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 1 MSHYVILAAQAGNVDALYELIWE--DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR 58
+ +I AA+ GN D + +LI D D R TPLH AA GH EI++
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGR-----TPLHYAAKEGHK----EIVK 54
Query: 59 L---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
L K + ++ G +PLH A + H ++V LI + V + +G TPLHY
Sbjct: 55 LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHY 109
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 39 TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
TPLH AA GH EI++L K + ++ G +PLH A + H ++V LI
Sbjct: 72 TPLHYAAKEGHK----EIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 96 NLVRVQGREGVTPL----HYGNVDLL 117
+ V +G TPL +GN +++
Sbjct: 128 D-VNTSDSDGRTPLDLAREHGNEEIV 152
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 19/118 (16%)
Query: 1 MSHYVILAAQAGNVDALYELIWE--DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR 58
+ +I AA+ GN D + +L+ D D R TPLH AA GH EI++
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADPNASDSDGR-----TPLHYAAENGHK----EIVK 54
Query: 59 L---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLHY 111
L K + ++ G +PLH A +N H ++V L+ D N GR TPLHY
Sbjct: 55 LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR---TPLHY 109
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 16/88 (18%)
Query: 39 TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID--V 93
TPLH AA GH EI++L K + ++ G +PLH A +N H ++V L+
Sbjct: 72 TPLHYAAENGHK----EIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 94 DRNLVRVQGREGVTPL----HYGNVDLL 117
D N GR TPL +GN +++
Sbjct: 128 DPNTSDSDGR---TPLDLAREHGNEEIV 152
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 1 MSHYVILAAQAGNVDALYELIWE--DAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR 58
+ +I AA+ GN D + +LI D D R TPLH AA GH E+++
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGR-----TPLHHAAENGH----KEVVK 54
Query: 59 L---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
L K + ++ G +PLH A +N H ++V LI + V + +G TPLH+
Sbjct: 55 LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHH 109
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 39 TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
TPLH AA GH E+++L K + ++ G +PLH A +N H ++V LI
Sbjct: 72 TPLHHAAENGH----KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 96 NLVRVQGREGVTPL----HYGNVDLLY 118
+ V +G TPL +GN +++
Sbjct: 128 D-VNTSDSDGRTPLDLAREHGNEEVVK 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + + D+ + TPLH+AA GH+ +E++
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGY--TPLHLAAREGHLEI-VEVLLKA 57
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ +++ G++PLHLA + H ++V L+ + V + ++G TPLH
Sbjct: 58 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLH 106
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
LAA+ G+++ + E++ + ++ D+ + TPLH+AA GH+ +E++ +
Sbjct: 41 LAAREGHLE-IVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEI-VEVLLKAGADVNA 96
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTP----LHYGNVDL 116
+++ G++PLHLA + H ++V L+ + V Q + G TP + GN D+
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAIDNGNEDI 149
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + + D+ + TPLH+AA GH+ +E++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGY--TPLHLAAREGHLEI-VEVLLKA 69
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ +++ G++PLHLA + H ++V L+ + V + ++G TPLH
Sbjct: 70 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLH 118
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
LAA+ G+++ + E++ + ++ D+ + TPLH+AA GH+ +E++ +
Sbjct: 53 LAAREGHLE-IVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEI-VEVLLKAGADVNA 108
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT----PLHYGNVDL 116
+++ G++PLHLA + H ++V L+ + V Q + G T + GN DL
Sbjct: 109 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISIDNGNEDL 161
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + + D+ + TPLH+AA GH+ +E++
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGY--TPLHLAAREGHLEI-VEVLLKA 57
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ +++ G++PLHLA + H ++V L+ + V + ++G TPLH
Sbjct: 58 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLH 106
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
LAA+ G+++ + E++ + ++ D+ + TPLH+AA GH+ +E++ +
Sbjct: 41 LAAREGHLE-IVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEI-VEVLLKAGADVNA 96
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTP 108
+++ G++PLHLA + H ++V L+ + V Q + G TP
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTP 137
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + + YG +PLHLA N H ++V L+ + V
Sbjct: 49 TPLHLAAKTGHLEI-VEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD-V 106
Query: 99 RVQGREGVTPLH 110
+ EG TPLH
Sbjct: 107 NAKDYEGFTPLH 118
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + ++ GF+PLHLA + H ++V L+ + V
Sbjct: 82 TPLHLAADNGHLEI-VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD-V 139
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDL 161
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 71 GFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
G +PLHLA + H ++V L+ + V G TPLH
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLH 85
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLHIAA V A +++ S A ++ G +PLHLA Q H +MV L+ N
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-G 271
Query: 99 RVQGREGVTPLH 110
+ + G+TPLH
Sbjct: 272 NLGNKSGLTPLH 283
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLHIAA GHV L ++ + S A + GF+PLH+A + ++ L++ D +
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKVRVAELLLERDAH-P 172
Query: 99 RVQGREGVTPL----HYGNVDLLYKFL 121
G+ G+TPL H+ N+D++ L
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH + ++ K + N+ G +PLHL Q H + LI +V
Sbjct: 247 TPLHLAAQEGHAEM-VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMV 304
Query: 99 RVQGREGVTPL----HYGNVDLLYKFL 121
R G TPL HYGN+ L+ KFL
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLV-KFL 330
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMR--LKPSFA 64
+AA+AG+ + L+ A + + TPLH AA +GH N ++ P+ A
Sbjct: 53 MAARAGHTEVAKYLLQNKAKV---NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 65 RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNV 114
G +PLH+A + H + VL L++ + + + ++G TPLH YG V
Sbjct: 110 ---TTAGHTPLHIAAREGHVETVLALLEKEASQACMT-KKGFTPLHVAAKYGKV 159
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
L AQ G+V + +++ + ++D R+ + TPLH+A+ G++ +++ + K
Sbjct: 284 LVAQEGHV-PVADVLIKHGVMVDATTRMGY--TPLHVASHYGNIKLVKFLLQHQADVNAK 340
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPL 109
+ G+SPLH A Q HT +V L+ + V +G TPL
Sbjct: 341 -TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS-SDGTTPL 381
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 37 VDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
V+TPLH+AA GH A +++ K K +PLH A + HT MV L++ + N
Sbjct: 47 VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD-DQTPLHCAARIGHTNMVKLLLENNAN 105
Query: 97 LVRVQGREGVTPLH 110
+ G TPLH
Sbjct: 106 -PNLATTAGHTPLH 118
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+A+ MGH+ +++ + + N +PLH+A + HT++ L+ ++ V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKV 73
Query: 99 RVQGREGVTPLH 110
+ ++ TPLH
Sbjct: 74 NAKAKDDQTPLH 85
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 36/136 (26%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
+AA+ G+V+ + L+ ++A Q TPLH+AA G V A E++ + +
Sbjct: 119 IAAREGHVETVLALLEKEA---SQACMTKKGFTPLHVAAKYGKVRVA-ELLLERDAHPNA 174
Query: 67 QNQYGFSPLHLALQNSHTQMVLRL--------------------------IDVDRNLVRV 100
+ G +PLH+A+ +++ +V L ++V R+L++
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234
Query: 101 QGR------EGVTPLH 110
G +GVTPLH
Sbjct: 235 GGSANAESVQGVTPLH 250
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 11/107 (10%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL---KPSF 63
LAA+ G+++ + +L+ E ++ D+ TPLH+AA GH LE+++L +
Sbjct: 8 LAARNGHLE-VVKLLLEAGADVNAKDKNGR--TPLHLAARNGH----LEVVKLLLEAGAD 60
Query: 64 ARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+++ G +PLHLA +N H ++V L++ + V + + G TPLH
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLH 106
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 39 TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
TPLH+AA GH LE+++L + +++ G +PLHLA +N H ++V L++
Sbjct: 4 TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 96 NLVRVQGREGVTPLH 110
+ V + + G TPLH
Sbjct: 60 D-VNAKDKNGRTPLH 73
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 10/90 (11%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL---KPSF 63
LAA+ G+++ + +L+ E ++ D+ TPLH+AA GH LE+++L +
Sbjct: 41 LAARNGHLE-VVKLLLEAGADVNAKDKNGR--TPLHLAARNGH----LEVVKLLLEAGAD 93
Query: 64 ARKQNQYGFSPLHLALQNSHTQMVLRLIDV 93
+++ G +PLHLA +N H ++V L++
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 71 GFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
G +PLHLA +N H ++V L++ + V + + G TPLH
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLH 40
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL- 59
+ +I AA+ GN D + +L+ E+ ++ D TPLH+AA GH E+++L
Sbjct: 4 LGKRLIEAAENGNKDRVKDLL-ENGADVNASDSDGK--TPLHLAAENGHK----EVVKLL 56
Query: 60 --KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLH 110
+ + ++ G +PLHLA +N H ++V L+ D N + +G TPLH
Sbjct: 57 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLH 108
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 19/93 (20%)
Query: 39 TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLID--V 93
TPLH+AA GH E+++L + + ++ G +PLHLA +N H ++V L+
Sbjct: 72 TPLHLAAENGHK----EVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 94 DRNLVRVQGREGVTPL----HYGN---VDLLYK 119
D N GR TPL +GN V LL K
Sbjct: 128 DPNTSDSDGR---TPLDLAREHGNEEVVKLLEK 157
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 8 AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
AA+AG D + LI A + + +D TPLH+AA GH+ +E++ +
Sbjct: 21 AARAGQDDEVRILIANGADV-NAVDNTGL--TPLHLAAVSGHLEI-VEVLLKHGADVDAA 76
Query: 68 NQYGFSPLHLALQNSHTQMVLRLI--DVDRNLVRVQGREGVTPLH 110
+ YGF+PLHLA H ++V L+ D N + G TPLH
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS---TPLH 118
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
LAA +G+++ + E++ + +D D F TPLH+AA GH LEI+ + +
Sbjct: 53 LAAVSGHLE-IVEVLLKHGADVDAADVYGF--TPLHLAAMTGH----LEIVEVLLKYGAD 105
Query: 67 QNQY---GFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT----PLHYGNVDL 116
N + G +PLHLA H ++V L+ + V Q + G T + GN DL
Sbjct: 106 VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD-VNAQDKFGKTAFDISIDNGNEDL 161
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 39 TPLHIAASMGHVNFALEIMRL---KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
TPLH+AA GH LE+++L + +++ G +PLHLA +N H ++V L++
Sbjct: 4 TPLHLAARNGH----LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 96 NLVRVQGREGVTPLH 110
+ V + + G TPLH
Sbjct: 60 D-VNAKDKNGRTPLH 73
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 10/90 (11%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL---KPSF 63
LAA+ G+++ + +L+ E ++ D+ TPLH+AA GH LE+++L +
Sbjct: 8 LAARNGHLE-VVKLLLEAGADVNAKDKNGR--TPLHLAARNGH----LEVVKLLLEAGAD 60
Query: 64 ARKQNQYGFSPLHLALQNSHTQMVLRLIDV 93
+++ G +PLHLA +N H ++V L++
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 71 GFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
G +PLHLA +N H ++V L++ + V + + G TPLH
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLH 40
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 9 AQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN 68
A +G +D L E I D L + D+ T LH A S GH +++L K +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 69 QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
G+SPLH+A ++V L+ V V + G TPLHY
Sbjct: 72 A-GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHY 112
Score = 33.1 bits (74), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
+PLHIAAS G ++ + +K + NQ G +PLH A + ++ + L++ N
Sbjct: 75 SPLHIAASAGRDEI-VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + D+ TPLH+AA +GH +E++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGS---TPLHLAAWIGHPEI-VEVLLKH 69
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ ++ G++PLHLA N H ++V L+ + V Q G+TPLH
Sbjct: 70 GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD-VNAQDAYGLTPLH 118
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + Q+ YG +PLHLA H ++V L+ + V
Sbjct: 82 TPLHLAADNGHLEI-VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-V 139
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDL 161
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 9 AQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN 68
A +G +D L E I D L + D+ T LH A S GH +++L K +
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 69 QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
G+SPLH+A ++V L+ V V + G TPLHY
Sbjct: 72 A-GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHY 112
Score = 32.7 bits (73), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
+PLHIAAS G + ++ + +K + NQ G +PLH A + ++ + L++ N
Sbjct: 75 SPLHIAASAG-XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 38 DTPLHIAASMGHVNFALEIMRL--KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDR 95
+TPLH AA GH A E+ +L K + +++ G +PLHLA +N H ++V +L+
Sbjct: 10 NTPLHNAAKNGH---AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV-KLLLAKG 65
Query: 96 NLVRVQGREGVTPLH 110
V + ++G TP H
Sbjct: 66 ADVNARSKDGNTPEH 80
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 8 AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL---KPSFA 64
AA+ G+ + + +L+ + A D R +TPLH+AA GH EI++L K +
Sbjct: 16 AAKNGHAEEVKKLLSKGA---DVNARSKDGNTPLHLAAKNGHA----EIVKLLLAKGADV 68
Query: 65 RKQNQYGFSPLHLALQNSHTQMVLRLIDV 93
+++ G +P HLA +N H ++V +L+D
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIV-KLLDA 96
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 69 QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ G +PLH A +N H + V +L+ + V + ++G TPLH
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLH 47
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
DTPLH+AA GH+ +E++ + + YGF+PLHLA H ++V L+ +
Sbjct: 81 DTPLHLAALYGHLEI-VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD- 138
Query: 98 VRVQGREGVT----PLHYGNVDL 116
V Q + G T + GN DL
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDL 161
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + + D TPLH+AA GH+ +E++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGK---TPLHLAAIKGHLEI-VEVLLKH 69
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLH 110
+ ++ G +PLHLA H ++V L+ +N V + G TPLH
Sbjct: 70 GADVNAADKMGDTPLHLAALYGHLEIVEVLL---KNGADVNATDTYGFTPLH 118
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 9 AQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN 68
A +G ++ L E I D L + D+ T LH A S GH +++L K +
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 69 QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
G+SPLH+A ++V L+ + V + G TPLHY
Sbjct: 72 A-GWSPLHIAASAGRDEIVKALLGKGAQVNAVN-QNGCTPLHY 112
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
+PLHIAAS G ++ K + NQ G +PLH A + ++ + L++ N
Sbjct: 75 SPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 9 AQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQN 68
A +G ++ L E I D L + D+ T LH A S GH +++L K +
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSR--TALHWACSAGHTEIVEFLLQLGVPVNDKDD 72
Query: 69 QYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHY 111
G+SPLH+A ++V L+ + V + G TPLHY
Sbjct: 73 A-GWSPLHIAASAGRDEIVKALLGKGAQVNAVN-QNGCTPLHY 113
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
+PLHIAAS G ++ K + NQ G +PLH A + ++ + L++ N
Sbjct: 76 SPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 8 AAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQ 67
AA+AG D + L+ A + + D + TPLH+AAS GH+ +E++ +
Sbjct: 21 AARAGQDDEVRILMANGADV-NATDNDGY--TPLHLAASNGHLEI-VEVLLKNGADVNAS 76
Query: 68 NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVDLLYKFL 121
+ G +PLHLA H ++V L+ + V +G TPLH YG+++++ L
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV 87
TPLH+AA GH+ +E++ + Q+++G + +++ N + +
Sbjct: 115 TPLHLAAKYGHLEI-VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + + D V + TPLH+AA GH+ +E++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NASDHVGW--TPLHLAAYFGHLEI-VEVLLKN 69
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ + G +PLHLA H ++V L+ + V G TPLH
Sbjct: 70 GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLH 118
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + + GF+PLHLA H ++V L+ + V
Sbjct: 82 TPLHLAADRGHLEV-VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD-V 139
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDL 161
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 7 LAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARK 66
LAA G+++ + E++ ++ ++ D F TPLH+AA++GH+ +E++ +
Sbjct: 86 LAADRGHLE-VVEVLLKNGADVNANDHNGF--TPLHLAANIGHLEI-VEVLLKHGADVNA 141
Query: 67 QNQYGFSPLHLALQNSHTQMV 87
Q+++G + +++ N + +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLA 162
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVD-TPLHIAASMGHVNFALEIMRL 59
+ ++ AA+AG D + L+ A ++ F TPLH+AA GH+ +E++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGA----DVNARDFTGWTPLHLAAHFGHLEI-VEVLLK 68
Query: 60 KPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ ++ G +PLHLA + H ++V L+ + V G TPLH
Sbjct: 69 NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLH 118
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + + +GF+PLHLA + H ++V L+ + V
Sbjct: 82 TPLHLAARRGHLEI-VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-V 139
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDL 161
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A D + DTPLH+AA +GH+ +E++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGA---DVNAEDTYGDTPLHLAARVGHLEI-VEVLLKN 69
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ + G +PLHLA + H ++V L+ + V G TPLH
Sbjct: 70 GADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLH 118
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + + G +PLHLA H ++V L+ + V
Sbjct: 82 TPLHLAAKRGHLEI-VEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD-V 139
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDL 161
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV 87
TPLH+AA GH+ +E++ + Q+++G + +++ N + +
Sbjct: 115 TPLHLAADTGHLEI-VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + + +G++PLHLA H ++V L+ + V
Sbjct: 49 TPLHLAAYSGHLEI-VEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD-V 106
Query: 99 RVQGREGVTPLH 110
+G+TPLH
Sbjct: 107 NAMDSDGMTPLH 118
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV 87
TPLH+AA G++ +E++ + Q+++G + +++ N + +
Sbjct: 115 TPLHLAAKWGYLEI-VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 8 AAQAGNVDALYELI--WEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFAR 65
AA+AG D + L+ DA D R TPLH+AA++GH+ +E++ +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGR-----TPLHMAAAVGHLEI-VEVLLRNGADVN 62
Query: 66 KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ G +PLHLA H ++V L+ + V + G+TPL+
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKYGAD-VNAKDATGITPLY 106
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AAS+GH+ +E++ + ++ G +PL+LA H ++V L+ + V
Sbjct: 70 TPLHLAASLGHLEI-VEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD-V 127
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 128 NAQDKFGKTAFDISIDIGNEDL 149
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 39 TPLHIAASMGHVNFALEIMR--LKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRN 96
TPLH A GH++ +++M+ PS + G S +HLA Q HT +V LI ++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGE---GCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 97 LVRVQGREGVTPLHY 111
V + + G+TPL +
Sbjct: 135 -VDMMDQNGMTPLMW 148
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + + D V + TPLH+AA GH+ +E++
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADV-NAADVVGW--TPLHLAAYWGHLEI-VEVLLKN 69
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLH 110
+ + G +PLHLA H ++V L+ +N V ++ G+TPLH
Sbjct: 70 GADVNAYDTLGSTPLHLAAHFGHLEIVEVLL---KNGADVNAKDDNGITPLH 118
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + ++ G +PLHLA H ++V L+ + V
Sbjct: 82 TPLHLAAHFGHLEI-VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD-V 139
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T ++ GN DL
Sbjct: 140 NAQDKFGKTAFDISINNGNEDL 161
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA+ G + +E++ + + G +PLHLA + H ++V L+ + V
Sbjct: 41 TPLHLAAANGQLEI-VEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD-V 98
Query: 99 RVQGREGVTPLH 110
R G TPLH
Sbjct: 99 NAYDRAGWTPLH 110
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 44 AASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGR 103
AA+ G + + I+ + + G +PLHLA N ++V L+ +N V
Sbjct: 13 AAAAGQ-DDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL---KNGADVNAS 68
Query: 104 E--GVTPLH 110
+ G+TPLH
Sbjct: 69 DSAGITPLH 77
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+ + GH+ +E++ + ++ G++PLHLA H ++V L+ + V
Sbjct: 49 TPLHLVVNNGHLEI-IEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD-V 106
Query: 99 RVQGREGVTPLH 110
+G TPLH
Sbjct: 107 NAMDYQGYTPLH 118
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + + G++PLHLA ++ H ++V L+ + V
Sbjct: 82 TPLHLAAYRGHLEI-VEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-V 139
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDL 161
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 70 YGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+G +PLHL + N H +++ L+ + V + G TPLH
Sbjct: 46 FGITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLH 85
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + + +D TPLH+AA +GH+ +E++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NALDEDGL--TPLHLAAQLGHLEI-VEVLLKY 69
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMV 87
+ ++ +G +PLHLA H ++V
Sbjct: 70 GADVNAEDNFGITPLHLAAIRGHLEIV 96
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 68 NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
++ G +PLHLA Q H ++V L+ + V + G+TPLH
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD-VNAEDNFGITPLH 85
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + + +G +PLHLA H ++V L++ + V
Sbjct: 49 TPLHLAAKRGHLEI-VEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD-V 106
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDL 128
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 68 NQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLH 110
+ G +PLHLA + H ++V L+ D N GR TPLH
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR---TPLH 85
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + ++ +G +PLHLA H ++V L++ + V
Sbjct: 49 TPLHLAAKRGHLEI-VEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD-V 106
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDL 128
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV 87
TPLH+AA++GH+ +E++ + Q+++G + +++ N + +
Sbjct: 82 TPLHLAATVGHLEI-VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 68 NQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLH 110
+ G +PLHLA + H ++V L+ D N + GR TPLH
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR---TPLH 85
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + + +G +PLHLA H ++V L++ + V
Sbjct: 49 TPLHLAAKRGHLEI-VEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD-V 106
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDL 128
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 68 NQYGFSPLHLALQNSHTQMVLRLID--VDRNLVRVQGREGVTPLH 110
+ G +PLHLA + H ++V L+ D N + GR TPLH
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR---TPLH 85
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
DTPLH+AAS GH + ++++ K N++G PLH A Q+ L+ + L
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV-ANGAL 125
Query: 98 VRVQGREGVTPL 109
V + + G P+
Sbjct: 126 VSICNKYGEMPV 137
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 28 LDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV 87
L+Q D F +PLH A G + +E++ ++ + N+ +PLHLA + H +V
Sbjct: 27 LNQGDDHGF--SPLHWACREGR-SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIV 83
Query: 88 LRLIDVDRNLVRVQGREGVTPLHY 111
+L+ ++ V G PLHY
Sbjct: 84 QKLLQYKADINAVN-EHGNVPLHY 106
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 68 NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVDLLYKFL 121
+ +GFSPLH A + + +V LI + + V R TPLH +G+ D++ K L
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 87
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
DTPLH+AAS GH + ++++ K N++G PLH A Q+ L+ + L
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLV-ANGAL 130
Query: 98 VRVQGREGVTPL 109
V + + G P+
Sbjct: 131 VSICNKYGEMPV 142
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 28 LDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV 87
L+Q D F +PLH A G + +E++ ++ + N+ +PLHLA + H +V
Sbjct: 32 LNQGDDHGF--SPLHWACREGR-SAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIV 88
Query: 88 LRLIDVDRNLVRVQGREGVTPLHY 111
+L+ ++ V G PLHY
Sbjct: 89 QKLLQYKADINAVN-EHGNVPLHY 111
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 68 NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVDLLYKFL 121
+ +GFSPLH A + + +V LI + + V R TPLH +G+ D++ K L
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLL 92
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI--DVDRN 96
TPLH+AA+ GH+ +E++ + + G +PLHLA H ++V L+ D N
Sbjct: 49 TPLHLAATYGHLEI-VEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 97 LVRVQGREGVTPLH 110
V G TPLH
Sbjct: 108 AVDTWGD---TPLH 118
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQM 86
DTPLH+AA MGH+ +E++ + Q+++G + +++ N + +
Sbjct: 114 DTPLHLAAIMGHLEI-VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA +GH+ +E++ + + +G +PLHLA H ++V L+ + V
Sbjct: 82 TPLHLAALIGHLEI-VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-V 139
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDL 161
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 68 NQYGFSPLHLALQNSHTQMVLRLI--DVDRNLVRVQGREGVTPLH 110
+ G +PLHLA H ++V L+ D N + + G TPLH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS---TPLH 85
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Query: 25 AYLLDQIDRVPFVD-------TPLHIAASMGHVNFALEIMR------LKPSFARKQNQYG 71
++LL +++ V D TP HIA S+G+ LE+++ LKP + NQ G
Sbjct: 53 SFLLSKMENVNLDDYPDDSGWTPFHIACSVGN----LEVVKSLYDRPLKPDLNKITNQ-G 107
Query: 72 FSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ LHLA+ ++ LI+ + VR++ + PLH
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLH 145
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
F PLH AAS+G + + L S Q++ G++PL AL H + L++
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 40 PLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ-NSHTQMVLRLIDVDR-NL 97
PLH A E++ KPS +++Q G PLH ++ +H L ++ NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 98 VRVQGREGVTPLH 110
G TP H
Sbjct: 65 DDYPDDSGWTPFH 77
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI--DVDRN 96
TPLH+AA+ GH+ +E++ + + G +PLHLA H ++V L+ D N
Sbjct: 49 TPLHLAATYGHLEI-VEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 97 LVRVQGREGVTPLH 110
V G TPLH
Sbjct: 108 AVDTWGD---TPLH 118
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 38 DTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQM 86
DTPLH+AA MGH+ +E++ + Q+++G + +++ N + +
Sbjct: 114 DTPLHLAAIMGHLEI-VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA +GH+ +E++ + + +G +PLHLA H ++V L+ + V
Sbjct: 82 TPLHLAALIGHLEI-VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-V 139
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDL 161
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 56 IMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI--DVDRNLVRVQGREGVTPLH 110
I+ + + G +PLHLA H ++V L+ D N + + G TPLH
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS---TPLH 85
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 34.7 bits (78), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 33 RVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
R TPLH+AAS GH N +E++ + ++ + LH A +++H ++V LI
Sbjct: 63 RTKVDRTPLHMAASEGHANI-VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARK-QNQYGFSPLHLALQNSHTQMVLRLIDVDRNL 97
+PLH+AA GH F+ + L+ +R + + +PLH+A H +V L+ ++
Sbjct: 36 SPLHLAAQYGH--FSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL---KHG 90
Query: 98 VRVQGRE--GVTPLHYGN-------VDLLYKFLA 122
V ++ +T LH+ V+LL K+ A
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Query: 25 AYLLDQIDRVPFVD-------TPLHIAASMGHVNFALEIMR------LKPSFARKQNQYG 71
++LL +++ V D TP HIA S+G+ LE+++ LKP + NQ G
Sbjct: 53 SFLLSKMENVNLDDYPDDSGWTPFHIACSVGN----LEVVKSLYDRPLKPDLNKITNQ-G 107
Query: 72 FSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ LHLA+ ++ LI+ + VR++ + PLH
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLH 145
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
F PLH AAS+G + + L S Q++ G++PL AL H + L++
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 40 PLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ-NSHTQMVLRLIDVDR-NL 97
PLH A E++ KPS +++Q G PLH ++ +H L ++ NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 98 VRVQGREGVTPLH 110
G TP H
Sbjct: 65 DDYPDDSGWTPFH 77
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 19/99 (19%)
Query: 25 AYLLDQIDRVPFVD-------TPLHIAASMGHVNFALEIMR------LKPSFARKQNQYG 71
++LL +++ V D TP HIA S+G+ LE+++ LKP + NQ G
Sbjct: 53 SFLLSKMENVNLDDYPDDSGWTPFHIACSVGN----LEVVKSLYDRPLKPDLNKITNQ-G 107
Query: 72 FSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+ LHLA+ ++ LI+ + VR++ + PLH
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLH 145
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 36 FVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLID 92
F PLH AAS+G + + L S Q++ G++PL AL H + L++
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE 195
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 40 PLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQ-NSHTQMVLRLIDVDR-NL 97
PLH A E++ KPS +++Q G PLH ++ +H L ++ NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 98 VRVQGREGVTPLH 110
G TP H
Sbjct: 65 DDYPDDSGWTPFH 77
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 5 VILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFA 64
++LAA+ +V AL +L+ + + Q R +T LHIAA ++ A+ +M P
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQ--RGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 65 RKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVR--------VQGREGVTPLHYGNVDL 116
F P+ L T + + +I+ + NLVR V R + HY +L
Sbjct: 65 -------FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117
Query: 117 LY 118
+Y
Sbjct: 118 IY 119
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 73 SPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH----YGNVDLLYKFLAACPESI 128
SPL LA + + Q + +L+ + V +G G T LH Y N++ + A PE +
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 129 LQ 130
+
Sbjct: 65 FE 66
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA +GH+ +E++ + G +PLHLA H ++V L+ + V
Sbjct: 49 TPLHLAAMLGHLEI-VEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD-V 106
Query: 99 RVQGREGVT----PLHYGNVDL 116
Q + G T + GN DL
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDL 128
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 70 YGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+G +PLHLA H ++V L+ + V G G TPLH
Sbjct: 46 WGHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLH 85
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 8 AAQAGNVDALYELIWEDAYLLDQIDRVPFVD-TPLHIAASMGHVNFALEIMRLKPSFARK 66
AA+AG+VD + L+ A ID TPL AA H+ A++ + +
Sbjct: 18 AAEAGHVDICHMLVQAGA----NIDTCSEDQRTPLMEAAENNHLE-AVKYLIKAGALVDP 72
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPL----HYGNVDLLYKFLA 122
++ G + LHLA + H ++V L+ + V Q G TP+ Y +VDL+ L+
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 41 LHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRV 100
LH AA G V+ A EI+ N +G SPLH+A + + V+ + D + V +
Sbjct: 148 LHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTL 205
Query: 101 QGREGVTPLHYGNVD 115
+ +EG TPL +++
Sbjct: 206 KNKEGETPLQCASLN 220
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
+PLH AA GHV+ +++ + ++ +PL A +N+H + V LI LV
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGA-LV 70
Query: 99 RVQGREGVTPLH 110
+ EG T LH
Sbjct: 71 DPKDAEGSTCLH 82
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
TPLH+AA GH+ +E++ + + G +PL LA H ++V L+ + V
Sbjct: 49 TPLHLAAFNGHLEI-VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-V 106
Query: 99 RVQGREGVTPLH 110
EG TPLH
Sbjct: 107 NANDMEGHTPLH 118
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV 87
TPLH+AA GH+ +E++ + Q+++G + +++ N + +
Sbjct: 115 TPLHLAAMFGHLEI-VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPL 109
++ G++PLHLA N H ++V L+ ++ V G+TPL
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPL 84
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 17 LYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLH 76
+ E++ ++ ++ +D + F TPLH+AA +GH+ A E++ + Q+++G +
Sbjct: 62 IVEVLLKNGADVNAVDAIGF--TPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFD 118
Query: 77 LALQNSHTQMV 87
+++ N + +
Sbjct: 119 ISIGNGNEDLA 129
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLH 110
+++YG +PL+LA + H ++V L+ +N V + G TPLH
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLL---KNGADVNAVDAIGFTPLH 85
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
+PLH+AA G + + ++ + A +N PLHLA Q H Q+V L+D +
Sbjct: 88 SPLHVAALHGRADL-IPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 99 RVQGREGVTPLHYG 112
+ + G TPL Y
Sbjct: 147 K-KDLSGNTPLIYA 159
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLID--VDRN 96
TPLH A + GH+ +E++ + SPLH A +N H +V L+ RN
Sbjct: 45 TPLHEACNHGHLKV-VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Query: 97 LVRVQGREGVTPLHYGNVDLLYKFLAACPE 126
V + G+ P+ Y + D K L PE
Sbjct: 104 AVNIF---GLRPVDYTD-DESMKSLLLLPE 129
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+N G +PLH+A+ + +MV L D +L + + G TPLH
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLH 110
+N G +PLH+A+ + +MV L D +L + + G TPLH
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGRE--GVTPLH----YGNVDLLYKF 120
+++ G +PLHLA N H ++V L+ +N V + G TPLH YG+++++
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLL---KNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 121 L 121
L
Sbjct: 100 L 100
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + + D+V TPLH+AA H+ +E++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NAEDKVGL--TPLHLAAMNDHLEI-VEVLLKN 69
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMV 87
+ + G +PLHL H ++V
Sbjct: 70 GADVNAIDAIGETPLHLVAMYGHLEIV 96
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/70 (20%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 17 LYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLH 76
+ E++ ++ ++ ID + +TPLH+ A GH+ +E++ + Q+++G +
Sbjct: 62 IVEVLLKNGADVNAIDAIG--ETPLHLVAMYGHLEI-VEVLLKHGADVNAQDKFGKTAFD 118
Query: 77 LALQNSHTQM 86
+++ N + +
Sbjct: 119 ISIDNGNEDL 128
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + + D+ + TPLH+AA GH+ +E++
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADV-NAKDKDGY--TPLHLAAREGHLEI-VEVLLKA 57
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMV 87
+ Q+++G + +++ N + +
Sbjct: 58 GADVNAQDKFGKTAFDISIDNGNEDLA 84
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT----PLHYGNVDL 116
+++ G++PLHLA + H ++V L+ + V Q + G T + GN DL
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISIDNGNEDL 83
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRLK 60
+ ++ AA+AG D + L+ A + + DR +TPLH+AA H+ +E++
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NANDRKG--NTPLHLAADYDHLEI-VEVLLKH 69
Query: 61 PSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT----PLHYGNVDL 116
+ + G +PLHLA H ++V L+ + V Q + G T + GN DL
Sbjct: 70 GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDL 128
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMV 87
TPLH+AA GH+ +E++ + Q+++G + +++ N + +
Sbjct: 82 TPLHLAALFGHLEI-VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT----PLHYGNVDL 116
+++ G +PLHLA +N H ++V L++ + V Q + G T + GN DL
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISIDNGNEDL 87
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 1 MSHYVILAAQAGNVDALYELIWEDAYLLDQIDRVPFVDTPLHIAASMGHVNFALEIMRL- 59
+ ++ AA+AG D + L+ A D + TPLH+AA GH LE+++L
Sbjct: 6 LGKKLLEAARAGQDDEVRILMANGA---DVAAKDKNGSTPLHLAARNGH----LEVVKLL 58
Query: 60 --KPSFARKQNQYGFSPLHLALQNSHTQMV 87
+ Q+++G + +++ N + +
Sbjct: 59 LEAGADVNAQDKFGKTAFDISIDNGNEDLA 88
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
+P+H AA G ++ L+++ + + G P+HLA+Q HT V+ + + +L
Sbjct: 76 SPVHDAARTGFLD-TLKVLVEHGADVNVPDGTGALPIHLAVQEGHT-AVVSFLAAESDLH 133
Query: 99 RVQGREGVTPL 109
R R G+TPL
Sbjct: 134 RRDAR-GLTPL 143
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLV 98
+P+H AA G ++ L+++ + + G P+HLA+Q HT V+ + + +L
Sbjct: 70 SPVHDAARTGFLD-TLKVLVEHGADVNVPDGTGALPIHLAVQEGHT-AVVSFLAAESDLH 127
Query: 99 RVQGREGVTPL 109
R R G+TPL
Sbjct: 128 RRDAR-GLTPL 137
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 66 KQNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYGNVDLLYKFLAACP 125
K+N YG P ++ L+ + + L++ + V Q +T G V Y FL P
Sbjct: 212 KKNSYGVHPYYMGLEEDGSAHGVLLLNSNAMDVTFQPLPALTYRTTGGVLDFYVFLGPTP 271
Query: 126 ESILQ 130
E + Q
Sbjct: 272 ELVTQ 276
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 67 QNQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVT----PLHYGNVDL 116
+++ G +PLHLA +N H ++V L++ + V Q + G T + GN DL
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDL 105
>pdb|3LFM|A Chain A, Crystal Structure Of The Fat Mass And Obesity Associated
(Fto) Protein Reveals Basis For Its Substrate
Specificity
Length = 495
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 95 RNLVRVQGREGVTPLHY---GNVDLLYKFL 121
R+LVR+QG++ +TP+ GN YK+L
Sbjct: 70 RDLVRIQGKDLLTPVSRILIGNPGCTYKYL 99
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 68 NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYG----NVDLLYKFLAA 123
N G + LH A+ HT++V L+ N V +G TPLH NV + KFL
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVC-KFLVE 124
Query: 124 CPESILQVT 132
++ +T
Sbjct: 125 SGAAVFAMT 133
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 68 NQYGFSPLHLALQNSHTQMVLRLIDVDRNLVRVQGREGVTPLHYG----NVDLLYKFLAA 123
N G + LH A+ HT++V L+ N V +G TPLH NV + KFL
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVC-KFLVE 124
Query: 124 CPESILQVT 132
++ +T
Sbjct: 125 SGAAVFAMT 133
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLI 91
T LH AA + + ++ K S KQ++ G +P+ LA Q ++V LI
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLI 333
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 39 TPLHIAASMGHVNFALEIMRLKPSFARKQNQYGFSPLHLALQNSHTQMVLRLID--VDRN 96
TPLH+AA H N +E++ + + G + LH A H Q L+ D +
Sbjct: 249 TPLHVAAERAH-NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 97 LVRVQ-------GREGV-------TPLHYGNVDLLYKFLAA 123
++ +Q G E V TP+ +VD Y+ L A
Sbjct: 308 IISLQGFTAAQMGNEAVQQILSESTPMRTSDVD--YRLLEA 346
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.141 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,918,782
Number of Sequences: 62578
Number of extensions: 142018
Number of successful extensions: 620
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 183
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)