Query 048414
Match_columns 87
No_of_seqs 205 out of 1307
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.2 7.8E-11 1.7E-15 73.5 7.1 59 28-86 8-66 (160)
2 KOG0031 Myosin regulatory ligh 99.2 5.7E-11 1.2E-15 73.4 6.2 54 32-85 24-77 (171)
3 COG5126 FRQ1 Ca2+-binding prot 99.2 9.3E-11 2E-15 73.1 5.6 51 36-86 88-138 (160)
4 KOG0027 Calmodulin and related 99.1 6.1E-10 1.3E-14 68.6 7.1 53 34-86 2-54 (151)
5 KOG0027 Calmodulin and related 99.1 4.6E-10 1E-14 69.1 5.7 49 38-86 83-131 (151)
6 PF00036 EF-hand_1: EF hand; 99.0 4.7E-10 1E-14 51.4 3.7 29 41-69 1-29 (29)
7 PF13405 EF-hand_6: EF-hand do 99.0 6.9E-10 1.5E-14 51.4 3.7 30 41-70 1-31 (31)
8 cd05027 S-100B S-100B: S-100B 99.0 2.5E-09 5.5E-14 60.8 6.7 50 37-86 5-61 (88)
9 cd05022 S-100A13 S-100A13: S-1 99.0 1.7E-09 3.8E-14 61.6 5.6 51 36-86 4-57 (89)
10 smart00027 EH Eps15 homology d 98.9 5.1E-09 1.1E-13 60.1 6.7 52 33-86 3-54 (96)
11 PF13499 EF-hand_7: EF-hand do 98.9 6.9E-09 1.5E-13 55.3 5.6 45 41-85 1-45 (66)
12 KOG0030 Myosin essential light 98.9 5.2E-09 1.1E-13 63.8 5.5 51 33-83 4-54 (152)
13 KOG0028 Ca2+-binding protein ( 98.9 7.5E-09 1.6E-13 64.4 6.3 62 25-86 18-79 (172)
14 KOG0028 Ca2+-binding protein ( 98.8 1.2E-08 2.6E-13 63.5 5.8 50 37-86 103-152 (172)
15 cd05031 S-100A10_like S-100A10 98.8 3.1E-08 6.7E-13 56.6 6.2 49 38-86 6-61 (94)
16 KOG0041 Predicted Ca2+-binding 98.8 2.4E-08 5.3E-13 64.3 6.1 66 22-87 81-146 (244)
17 cd05025 S-100A1 S-100A1: S-100 98.8 4.3E-08 9.4E-13 55.8 6.6 49 38-86 7-62 (92)
18 KOG0037 Ca2+-binding protein, 98.8 2.6E-08 5.7E-13 64.6 6.0 48 39-86 123-170 (221)
19 cd00213 S-100 S-100: S-100 dom 98.8 4E-08 8.6E-13 55.3 5.9 51 36-86 4-61 (88)
20 PTZ00183 centrin; Provisional 98.7 1.1E-07 2.4E-12 57.8 7.8 55 31-85 8-62 (158)
21 cd05029 S-100A6 S-100A6: S-100 98.7 1.5E-07 3.2E-12 53.5 6.3 51 36-86 6-61 (88)
22 cd00052 EH Eps15 homology doma 98.6 9.8E-08 2.1E-12 50.6 4.9 43 42-86 1-43 (67)
23 PTZ00184 calmodulin; Provision 98.6 2.4E-07 5.2E-12 55.7 7.1 54 32-85 3-56 (149)
24 KOG0031 Myosin regulatory ligh 98.6 1.4E-07 3.1E-12 58.5 5.6 48 38-85 99-146 (171)
25 cd05026 S-100Z S-100Z: S-100Z 98.6 2.9E-07 6.2E-12 52.7 6.3 50 37-86 7-63 (93)
26 PF13202 EF-hand_5: EF hand; P 98.5 1.5E-07 3.2E-12 41.6 3.1 25 42-66 1-25 (25)
27 KOG0030 Myosin essential light 98.5 3.5E-07 7.6E-12 55.9 4.7 48 37-84 85-132 (152)
28 cd00051 EFh EF-hand, calcium b 98.4 1.2E-06 2.6E-11 44.6 5.9 44 42-85 2-45 (63)
29 PTZ00183 centrin; Provisional 98.4 2E-06 4.2E-11 52.3 6.4 48 39-86 89-136 (158)
30 PF14658 EF-hand_9: EF-hand do 98.3 1.2E-06 2.7E-11 47.2 4.4 43 44-86 2-45 (66)
31 PTZ00184 calmodulin; Provision 98.3 3.3E-06 7.2E-11 50.6 6.1 48 39-86 83-130 (149)
32 cd05023 S-100A11 S-100A11: S-1 98.2 1.4E-05 3E-10 45.4 6.4 51 36-86 5-62 (89)
33 KOG0034 Ca2+/calmodulin-depend 98.1 1.4E-05 3.1E-10 51.2 5.7 46 40-85 104-152 (187)
34 smart00054 EFh EF-hand, calciu 98.0 8.5E-06 1.8E-10 35.3 3.0 28 41-68 1-28 (29)
35 KOG0036 Predicted mitochondria 98.0 2.4E-05 5.2E-10 55.2 6.2 52 35-86 77-128 (463)
36 cd00252 SPARC_EC SPARC_EC; ext 97.9 5.7E-05 1.2E-09 45.0 6.1 48 35-86 43-90 (116)
37 cd05030 calgranulins Calgranul 97.9 5.6E-05 1.2E-09 42.7 5.3 50 37-86 5-61 (88)
38 PF13833 EF-hand_8: EF-hand do 97.8 6.7E-05 1.4E-09 38.3 4.5 34 53-86 1-35 (54)
39 PLN02964 phosphatidylserine de 97.8 0.0001 2.3E-09 54.7 6.4 49 33-85 136-188 (644)
40 PLN02964 phosphatidylserine de 97.7 0.00022 4.7E-09 53.1 7.1 53 34-86 173-225 (644)
41 PF13833 EF-hand_8: EF-hand do 97.7 0.00011 2.4E-09 37.4 4.0 29 40-68 25-53 (54)
42 KOG0038 Ca2+-binding kinase in 97.5 0.00015 3.3E-09 45.0 3.3 47 41-87 109-156 (189)
43 KOG0040 Ca2+-binding actin-bun 97.4 0.00048 1E-08 55.3 5.6 59 27-85 2240-2305(2399)
44 PF13499 EF-hand_7: EF-hand do 97.3 0.00054 1.2E-08 36.1 4.2 29 38-66 38-66 (66)
45 KOG0046 Ca2+-binding actin-bun 97.1 0.0018 3.9E-08 47.3 5.6 53 31-84 10-65 (627)
46 PF12763 EF-hand_4: Cytoskelet 97.0 0.0024 5.1E-08 37.3 4.9 52 32-86 2-53 (104)
47 KOG0037 Ca2+-binding protein, 97.0 0.0043 9.2E-08 40.6 6.3 49 38-86 55-104 (221)
48 KOG0044 Ca2+ sensor (EF-Hand s 96.9 0.00091 2E-08 43.1 2.5 31 39-69 99-129 (193)
49 cd05026 S-100Z S-100Z: S-100Z 96.7 0.0039 8.5E-08 35.4 4.0 32 39-70 52-83 (93)
50 cd05022 S-100A13 S-100A13: S-1 96.6 0.0044 9.5E-08 35.2 4.0 31 40-70 47-77 (89)
51 KOG0042 Glycerol-3-phosphate d 96.6 0.0061 1.3E-07 45.0 5.1 60 28-87 581-640 (680)
52 KOG0036 Predicted mitochondria 96.6 0.011 2.5E-07 42.1 6.3 53 32-84 6-59 (463)
53 cd05029 S-100A6 S-100A6: S-100 96.4 0.0085 1.8E-07 33.8 4.1 31 40-70 51-81 (88)
54 cd05031 S-100A10_like S-100A10 96.4 0.0033 7.3E-08 35.6 2.4 33 39-71 50-82 (94)
55 cd05023 S-100A11 S-100A11: S-1 96.4 0.0075 1.6E-07 34.2 3.8 32 39-70 51-82 (89)
56 cd05030 calgranulins Calgranul 96.3 0.0095 2.1E-07 33.5 4.0 32 39-70 50-81 (88)
57 cd00252 SPARC_EC SPARC_EC; ext 96.3 0.0083 1.8E-07 35.7 3.7 26 41-66 81-106 (116)
58 cd05025 S-100A1 S-100A1: S-100 96.2 0.013 2.9E-07 33.0 4.1 32 39-70 51-82 (92)
59 KOG0377 Protein serine/threoni 96.1 0.019 4.1E-07 41.6 5.5 45 41-85 548-596 (631)
60 PF14788 EF-hand_10: EF hand; 96.0 0.024 5.3E-07 29.0 4.1 29 41-69 22-50 (51)
61 cd00052 EH Eps15 homology doma 95.9 0.021 4.6E-07 29.6 4.1 31 39-69 32-62 (67)
62 cd05024 S-100A10 S-100A10: A s 95.9 0.095 2.1E-06 30.0 6.8 50 37-87 5-59 (91)
63 smart00027 EH Eps15 homology d 95.8 0.025 5.5E-07 32.0 4.4 37 40-76 44-85 (96)
64 cd00051 EFh EF-hand, calcium b 95.7 0.023 5E-07 28.2 3.5 28 39-66 35-62 (63)
65 PRK12309 transaldolase/EF-hand 95.5 0.032 6.9E-07 39.6 4.8 47 39-85 333-386 (391)
66 cd05027 S-100B S-100B: S-100B 95.5 0.035 7.7E-07 31.3 4.1 31 39-69 50-80 (88)
67 PRK12309 transaldolase/EF-hand 95.5 0.066 1.4E-06 38.0 6.3 37 32-68 349-385 (391)
68 KOG0034 Ca2+/calmodulin-depend 95.5 0.065 1.4E-06 34.4 5.7 46 32-78 25-71 (187)
69 PF09279 EF-hand_like: Phospho 95.5 0.099 2.2E-06 28.7 5.8 43 41-84 1-45 (83)
70 cd00213 S-100 S-100: S-100 dom 95.4 0.04 8.6E-07 30.6 4.1 31 39-69 50-80 (88)
71 cd05024 S-100A10 S-100A10: A s 95.2 0.045 9.9E-07 31.3 3.9 32 39-70 47-78 (91)
72 PF08726 EFhand_Ca_insen: Ca2+ 94.0 0.077 1.7E-06 28.8 2.7 27 39-66 5-31 (69)
73 KOG0044 Ca2+ sensor (EF-Hand s 93.8 0.17 3.6E-06 32.7 4.5 32 38-69 62-93 (193)
74 PF14658 EF-hand_9: EF-hand do 93.5 0.18 3.9E-06 27.2 3.7 30 39-68 34-64 (66)
75 PF12763 EF-hand_4: Cytoskelet 93.5 0.16 3.5E-06 29.6 3.7 39 28-69 34-72 (104)
76 KOG3449 60S acidic ribosomal p 93.5 0.39 8.6E-06 28.3 5.2 44 42-85 3-46 (112)
77 KOG2871 Uncharacterized conser 93.3 0.11 2.5E-06 36.8 3.4 43 39-81 308-350 (449)
78 PF14788 EF-hand_10: EF hand; 93.2 0.29 6.4E-06 25.0 4.0 31 56-86 1-31 (51)
79 PF03672 UPF0154: Uncharacteri 93.2 0.3 6.4E-06 26.2 4.1 30 56-85 31-60 (64)
80 KOG2643 Ca2+ binding protein, 92.9 0.057 1.2E-06 38.9 1.4 28 40-67 233-260 (489)
81 COG3763 Uncharacterized protei 92.4 0.75 1.6E-05 25.0 5.0 42 44-86 27-68 (71)
82 KOG0035 Ca2+-binding actin-bun 92.1 0.5 1.1E-05 36.9 5.6 44 32-75 739-782 (890)
83 KOG1707 Predicted Ras related/ 91.6 0.48 1E-05 35.5 4.9 39 32-70 307-345 (625)
84 PF05042 Caleosin: Caleosin re 91.6 0.3 6.5E-06 31.1 3.4 36 40-75 7-42 (174)
85 PRK00523 hypothetical protein; 91.4 0.9 1.9E-05 24.9 4.6 41 44-85 28-68 (72)
86 KOG1707 Predicted Ras related/ 91.4 1.1 2.3E-05 33.7 6.4 53 32-84 187-240 (625)
87 KOG2643 Ca2+ binding protein, 91.3 0.096 2.1E-06 37.8 1.0 27 42-68 427-453 (489)
88 PTZ00373 60S Acidic ribosomal 90.8 1.3 2.8E-05 26.3 5.4 44 42-85 5-48 (112)
89 PRK01844 hypothetical protein; 90.0 1.4 2.9E-05 24.2 4.6 30 56-85 38-67 (72)
90 PF10591 SPARC_Ca_bdg: Secrete 89.9 0.077 1.7E-06 31.3 -0.4 34 36-69 50-83 (113)
91 KOG4065 Uncharacterized conser 89.3 1.2 2.6E-05 26.8 4.4 53 32-86 61-123 (144)
92 cd05833 Ribosomal_P2 Ribosomal 89.1 2.1 4.7E-05 25.2 5.3 44 42-85 3-46 (109)
93 PF00046 Homeobox: Homeobox do 89.1 1.8 4E-05 21.7 6.5 46 32-84 5-50 (57)
94 cd00086 homeodomain Homeodomai 89.1 1.8 3.9E-05 21.6 6.4 46 32-84 5-50 (59)
95 PF09069 EF-hand_3: EF-hand; 88.6 1.3 2.8E-05 25.3 4.0 29 39-68 2-30 (90)
96 PF06648 DUF1160: Protein of u 88.3 1.7 3.7E-05 26.2 4.6 44 39-85 36-80 (122)
97 PF00404 Dockerin_1: Dockerin 87.9 1 2.2E-05 18.8 2.5 16 50-65 1-16 (21)
98 PF01023 S_100: S-100/ICaBP ty 87.7 2.1 4.6E-05 21.0 4.1 32 37-68 3-36 (44)
99 KOG4223 Reticulocalbin, calume 87.2 0.93 2E-05 31.5 3.4 33 36-68 73-105 (325)
100 KOG4251 Calcium binding protei 86.7 1.4 3E-05 30.0 3.9 29 38-66 99-127 (362)
101 KOG4223 Reticulocalbin, calume 86.7 0.63 1.4E-05 32.3 2.4 43 44-86 245-287 (325)
102 COG2818 Tag 3-methyladenine DN 86.6 0.75 1.6E-05 29.6 2.6 49 37-85 52-100 (188)
103 PLN00138 large subunit ribosom 85.3 4.7 0.0001 23.9 5.3 41 45-85 6-46 (113)
104 PF10591 SPARC_Ca_bdg: Secrete 85.0 1.3 2.7E-05 26.1 2.8 24 41-64 89-112 (113)
105 PF13551 HTH_29: Winged helix- 83.9 5.7 0.00012 22.3 6.2 52 34-85 58-111 (112)
106 cd04411 Ribosomal_P1_P2_L12p R 83.5 6.9 0.00015 22.9 5.6 29 57-85 17-45 (105)
107 PF01885 PTS_2-RNA: RNA 2'-pho 83.4 2.6 5.5E-05 27.0 3.9 36 50-85 26-61 (186)
108 PRK00819 RNA 2'-phosphotransfe 83.3 2.8 6.1E-05 26.8 4.1 34 51-84 28-61 (179)
109 KOG0377 Protein serine/threoni 83.1 2.3 4.9E-05 31.3 3.9 35 40-74 464-499 (631)
110 KOG0169 Phosphoinositide-speci 82.1 3.5 7.7E-05 31.8 4.7 52 34-85 130-181 (746)
111 KOG2243 Ca2+ release channel ( 81.3 2.3 4.9E-05 35.8 3.6 40 45-85 4062-4101(5019)
112 KOG2562 Protein phosphatase 2 81.3 1.1 2.3E-05 32.8 1.7 30 39-68 350-379 (493)
113 PF03979 Sigma70_r1_1: Sigma-7 81.3 2.8 6.1E-05 23.1 3.2 44 39-86 6-49 (82)
114 PF05042 Caleosin: Caleosin re 81.1 3.5 7.5E-05 26.3 3.8 29 40-68 96-124 (174)
115 KOG4251 Calcium binding protei 80.9 2.9 6.3E-05 28.5 3.6 52 33-84 273-325 (362)
116 TIGR01639 P_fal_TIGR01639 Plas 80.7 5.8 0.00013 20.8 4.1 31 55-85 8-38 (61)
117 KOG1955 Ral-GTPase effector RA 79.6 1.4 3.1E-05 32.7 1.9 30 39-68 264-293 (737)
118 PF07128 DUF1380: Protein of u 79.5 4.5 9.9E-05 24.9 3.8 30 57-86 27-56 (139)
119 PF09682 Holin_LLH: Phage holi 79.4 5.8 0.00012 23.1 4.2 35 52-86 63-101 (108)
120 PRK14981 DNA-directed RNA poly 78.9 5.5 0.00012 23.4 4.0 29 58-86 80-108 (112)
121 KOG4065 Uncharacterized conser 78.8 4.4 9.5E-05 24.5 3.5 31 34-64 110-141 (144)
122 TIGR00624 tag DNA-3-methyladen 78.5 2.4 5.2E-05 27.1 2.5 49 37-85 50-98 (179)
123 KOG2301 Voltage-gated Ca2+ cha 77.6 2.2 4.8E-05 35.6 2.6 39 33-71 1410-1448(1592)
124 COG2058 RPP1A Ribosomal protei 77.5 11 0.00025 22.2 5.0 39 46-85 7-45 (109)
125 PF07308 DUF1456: Protein of u 77.1 5.1 0.00011 21.5 3.2 24 59-82 16-39 (68)
126 KOG0038 Ca2+-binding kinase in 77.0 7.9 0.00017 24.4 4.4 37 32-68 140-177 (189)
127 PRK06402 rpl12p 50S ribosomal 76.9 13 0.00027 21.9 5.5 30 56-85 16-45 (106)
128 PRK10353 3-methyl-adenine DNA 76.7 2.2 4.7E-05 27.5 2.0 49 37-85 51-99 (187)
129 KOG0843 Transcription factor E 76.5 12 0.00025 24.3 5.1 46 32-84 107-152 (197)
130 PF01316 Arg_repressor: Argini 76.2 8.2 0.00018 20.9 3.9 30 56-85 19-48 (70)
131 KOG0506 Glutaminase (contains 75.4 16 0.00035 27.3 6.2 41 45-85 91-131 (622)
132 PF11116 DUF2624: Protein of u 75.4 10 0.00022 21.4 4.2 28 56-83 14-41 (85)
133 KOG4666 Predicted phosphate ac 75.0 5 0.00011 28.4 3.5 30 39-68 295-324 (412)
134 PF07879 PHB_acc_N: PHB/PHA ac 74.9 7 0.00015 20.9 3.3 37 47-83 10-56 (64)
135 PF09068 EF-hand_2: EF hand; 74.6 5.4 0.00012 24.0 3.2 31 39-69 96-126 (127)
136 PF01698 FLO_LFY: Floricaula / 74.5 0.99 2.2E-05 32.1 0.0 49 37-86 46-94 (386)
137 PF08461 HTH_12: Ribonuclease 73.9 7.7 0.00017 20.5 3.4 34 53-86 10-43 (66)
138 KOG0751 Mitochondrial aspartat 73.6 4.2 9E-05 30.4 2.9 29 41-69 109-137 (694)
139 PF11848 DUF3368: Domain of un 72.9 9.8 0.00021 18.8 3.7 32 54-85 15-47 (48)
140 KOG3555 Ca2+-binding proteogly 72.7 4.9 0.00011 28.6 3.0 33 34-66 244-276 (434)
141 cd05831 Ribosomal_P1 Ribosomal 72.3 13 0.00029 21.5 4.4 31 55-85 16-46 (103)
142 PF01325 Fe_dep_repress: Iron 70.8 13 0.00028 19.2 5.1 45 34-85 2-46 (60)
143 PF03352 Adenine_glyco: Methyl 70.7 2.3 4.9E-05 27.2 1.0 48 38-85 47-94 (179)
144 PLN02230 phosphoinositide phos 70.4 21 0.00046 27.1 6.1 46 39-85 28-76 (598)
145 PRK00441 argR arginine repress 70.2 12 0.00026 23.1 4.1 32 54-85 16-47 (149)
146 smart00389 HOX Homeodomain. DN 69.9 12 0.00025 18.4 5.9 45 33-84 6-50 (56)
147 PF09336 Vps4_C: Vps4 C termin 69.8 8.1 0.00018 20.3 2.9 28 56-83 29-56 (62)
148 PF04558 tRNA_synt_1c_R1: Glut 69.7 3.3 7.1E-05 26.1 1.6 45 41-86 86-130 (164)
149 PF07499 RuvA_C: RuvA, C-termi 69.2 12 0.00026 18.3 3.9 24 60-85 4-27 (47)
150 KOG1955 Ral-GTPase effector RA 69.1 14 0.0003 27.8 4.7 50 33-84 224-273 (737)
151 PF12486 DUF3702: ImpA domain 68.8 25 0.00055 21.8 5.8 40 36-75 65-108 (148)
152 PLN02952 phosphoinositide phos 67.7 26 0.00057 26.6 6.1 46 39-85 37-84 (599)
153 COG1460 Uncharacterized protei 67.5 14 0.0003 22.1 3.7 29 58-86 81-109 (114)
154 TIGR01565 homeo_ZF_HD homeobox 67.5 16 0.00035 19.0 4.7 41 32-79 6-50 (58)
155 PHA02554 13 neck protein; Prov 67.4 9.5 0.00021 26.5 3.5 30 58-87 7-42 (311)
156 PRK00034 gatC aspartyl/glutamy 67.1 19 0.00041 20.1 4.3 30 56-85 2-31 (95)
157 PF02885 Glycos_trans_3N: Glyc 67.0 13 0.00029 19.4 3.4 28 55-82 13-41 (66)
158 TIGR00135 gatC glutamyl-tRNA(G 67.0 19 0.00041 20.1 4.2 29 57-85 1-29 (93)
159 KOG0998 Synaptic vesicle prote 66.9 8.1 0.00017 30.4 3.4 49 33-83 276-324 (847)
160 KOG0751 Mitochondrial aspartat 66.7 7.4 0.00016 29.1 3.0 47 36-82 175-221 (694)
161 KOG1029 Endocytic adaptor prot 66.3 13 0.00029 29.4 4.3 38 34-71 189-226 (1118)
162 TIGR03798 ocin_TIGR03798 bacte 66.2 16 0.00035 19.0 3.6 26 56-81 24-49 (64)
163 PRK09462 fur ferric uptake reg 66.2 27 0.00058 21.1 5.1 35 52-86 29-63 (148)
164 KOG4578 Uncharacterized conser 66.1 4 8.7E-05 28.9 1.5 27 42-68 372-398 (421)
165 PF03874 RNA_pol_Rpb4: RNA pol 65.7 8.9 0.00019 22.2 2.8 27 59-85 87-113 (117)
166 TIGR01529 argR_whole arginine 65.4 16 0.00036 22.4 4.0 33 53-85 13-45 (146)
167 KOG0488 Transcription factor B 65.4 40 0.00087 23.4 6.3 46 32-84 177-222 (309)
168 KOG4666 Predicted phosphate ac 64.8 9.6 0.00021 27.0 3.1 41 39-79 258-299 (412)
169 PRK03341 arginine repressor; P 63.3 17 0.00036 23.0 3.8 33 53-85 26-58 (168)
170 TIGR00470 sepS O-phosphoseryl- 63.0 27 0.00059 26.1 5.2 52 30-85 118-169 (533)
171 PF07862 Nif11: Nitrogen fixat 62.9 14 0.0003 18.1 2.8 21 58-78 28-48 (49)
172 PRK06253 O-phosphoseryl-tRNA s 62.7 28 0.0006 26.1 5.3 50 32-85 121-170 (529)
173 PF08414 NADPH_Ox: Respiratory 62.6 24 0.00052 20.6 4.0 26 39-66 29-54 (100)
174 PF05872 DUF853: Bacterial pro 62.6 46 0.001 24.8 6.3 39 33-71 121-159 (502)
175 PF06569 DUF1128: Protein of u 61.6 18 0.0004 19.7 3.3 36 33-70 32-67 (71)
176 smart00657 RPOL4c DNA-directed 61.1 19 0.00042 21.2 3.7 53 34-86 52-112 (118)
177 TIGR03685 L21P_arch 50S riboso 61.1 31 0.00067 20.1 5.5 30 56-85 16-45 (105)
178 KOG2116 Protein involved in pl 60.9 9.6 0.00021 29.3 2.8 33 54-86 538-571 (738)
179 PF12213 Dpoe2NT: DNA polymera 60.5 19 0.0004 19.6 3.2 42 40-86 7-48 (73)
180 smart00513 SAP Putative DNA-bi 59.3 16 0.00036 16.5 2.6 19 56-74 3-21 (35)
181 TIGR01848 PHA_reg_PhaR polyhyd 58.7 17 0.00038 21.4 3.1 20 48-67 11-30 (107)
182 PF10982 DUF2789: Protein of u 57.8 24 0.00052 19.4 3.3 26 59-84 5-30 (74)
183 KOG3866 DNA-binding protein of 57.7 8 0.00017 27.3 1.8 26 43-68 247-272 (442)
184 PF10281 Ish1: Putative stress 57.3 19 0.00041 16.7 2.6 17 58-74 5-21 (38)
185 cd05832 Ribosomal_L12p Ribosom 56.9 38 0.00083 19.9 5.4 30 56-85 16-45 (106)
186 COG1859 KptA RNA:NAD 2'-phosph 55.6 26 0.00057 23.1 3.8 34 51-84 54-87 (211)
187 PLN02223 phosphoinositide phos 55.3 58 0.0013 24.6 5.9 47 39-86 15-66 (537)
188 KOG4347 GTPase-activating prot 54.9 22 0.00047 27.3 3.7 33 38-70 553-585 (671)
189 PF01475 FUR: Ferric uptake re 54.9 23 0.0005 20.5 3.3 31 55-85 22-52 (120)
190 PF06384 ICAT: Beta-catenin-in 54.6 17 0.00036 20.2 2.4 27 55-81 8-41 (78)
191 KOG0493 Transcription factor E 54.1 71 0.0015 22.1 5.9 45 32-83 251-295 (342)
192 PTZ00315 2'-phosphotransferase 53.8 27 0.00059 26.5 4.1 35 50-84 399-433 (582)
193 PF14164 YqzH: YqzH-like prote 53.3 34 0.00075 18.3 4.9 46 40-85 8-57 (64)
194 PF14848 HU-DNA_bdg: DNA-bindi 53.2 38 0.00082 20.1 4.0 32 54-85 26-57 (124)
195 KOG0040 Ca2+-binding actin-bun 53.0 49 0.0011 28.6 5.5 46 41-86 2297-2344(2399)
196 PF02337 Gag_p10: Retroviral G 52.8 20 0.00044 20.4 2.7 27 60-86 12-38 (90)
197 PF08672 APC2: Anaphase promot 52.8 33 0.00071 17.9 3.3 15 55-69 31-45 (60)
198 KOG2562 Protein phosphatase 2 52.6 29 0.00064 25.6 4.0 42 44-86 143-184 (493)
199 PF13829 DUF4191: Domain of un 51.9 46 0.00099 22.2 4.5 35 51-85 162-196 (224)
200 PF01498 HTH_Tnp_Tc3_2: Transp 51.8 23 0.0005 18.5 2.7 31 54-84 11-41 (72)
201 PF02459 Adeno_terminal: Adeno 51.6 27 0.00058 26.3 3.7 44 42-85 457-500 (548)
202 PRK12821 aspartyl/glutamyl-tRN 51.6 49 0.0011 24.5 4.9 53 33-85 357-417 (477)
203 smart00874 B5 tRNA synthetase 51.3 35 0.00075 17.7 3.4 19 56-74 18-36 (71)
204 PRK04280 arginine repressor; P 50.6 29 0.00063 21.4 3.3 29 57-85 19-47 (148)
205 PRK00199 ihfB integration host 49.7 45 0.00097 18.5 3.9 28 58-85 2-29 (94)
206 TIGR01673 holin_LLH phage holi 49.5 53 0.0011 19.3 4.2 41 46-86 56-101 (108)
207 TIGR03830 CxxCG_CxxCG_HTH puta 48.9 51 0.0011 19.0 5.1 49 32-82 40-88 (127)
208 PF14513 DAG_kinase_N: Diacylg 48.3 61 0.0013 19.9 4.4 44 41-84 26-77 (138)
209 TIGR00988 hip integration host 48.2 48 0.001 18.4 3.9 28 58-85 2-29 (94)
210 PRK12820 bifunctional aspartyl 48.1 1.2E+02 0.0027 23.7 6.9 75 5-85 564-640 (706)
211 PRK07571 bidirectional hydroge 47.9 70 0.0015 20.2 6.9 52 29-82 11-75 (169)
212 KOG4403 Cell surface glycoprot 47.9 20 0.00043 26.4 2.5 30 39-68 67-96 (575)
213 cd07153 Fur_like Ferric uptake 47.9 51 0.0011 18.7 5.1 33 54-86 14-46 (116)
214 KOG0041 Predicted Ca2+-binding 47.6 29 0.00062 23.1 3.0 30 39-68 134-163 (244)
215 PRK05066 arginine repressor; P 47.4 41 0.00089 21.0 3.6 30 56-85 23-53 (156)
216 cd07894 Adenylation_RNA_ligase 47.1 26 0.00055 24.7 3.0 42 45-86 127-181 (342)
217 PF02334 RTP: Replication term 47.0 26 0.00057 20.9 2.6 34 53-86 32-65 (122)
218 PF08044 DUF1707: Domain of un 46.8 33 0.00071 17.4 2.7 39 40-84 13-51 (53)
219 PF11829 DUF3349: Protein of u 46.2 58 0.0013 18.8 4.3 30 57-86 20-49 (96)
220 PRK11639 zinc uptake transcrip 45.8 62 0.0013 20.2 4.3 33 54-86 39-71 (169)
221 COG0721 GatC Asp-tRNAAsn/Glu-t 45.7 57 0.0012 18.6 4.0 30 56-85 2-31 (96)
222 PLN02859 glutamine-tRNA ligase 45.6 32 0.00069 27.1 3.5 46 40-86 87-132 (788)
223 PLN02222 phosphoinositide phos 45.6 93 0.002 23.7 5.8 42 41-84 26-69 (581)
224 PF05597 Phasin: Poly(hydroxya 44.8 44 0.00096 20.3 3.4 26 60-86 94-119 (132)
225 PF04876 Tenui_NCP: Tenuivirus 44.3 81 0.0017 19.9 4.7 38 50-87 93-142 (175)
226 PF12949 HeH: HeH/LEM domain; 43.6 26 0.00056 16.3 1.8 18 56-73 3-20 (35)
227 PF08235 LNS2: LNS2 (Lipin/Ned 43.5 16 0.00035 22.9 1.4 32 54-85 7-39 (157)
228 PF13331 DUF4093: Domain of un 42.9 47 0.001 18.6 3.2 26 55-82 61-86 (87)
229 PF08784 RPA_C: Replication pr 42.5 59 0.0013 18.2 3.6 41 40-86 50-90 (102)
230 TIGR01209 RNA ligase, Pab1020 41.3 32 0.0007 24.6 2.8 29 45-73 162-190 (374)
231 PF09494 Slx4: Slx4 endonuclea 41.0 55 0.0012 17.0 3.7 16 56-71 44-59 (64)
232 PF09373 PMBR: Pseudomurein-bi 40.8 35 0.00076 15.4 2.0 16 54-69 2-17 (33)
233 KOG4004 Matricellular protein 40.5 16 0.00034 24.2 1.0 28 39-66 221-248 (259)
234 PF11460 DUF3007: Protein of u 39.4 80 0.0017 18.5 5.1 40 36-87 65-104 (104)
235 PF06226 DUF1007: Protein of u 39.4 35 0.00076 22.1 2.6 24 46-69 56-79 (212)
236 TIGR02675 tape_meas_nterm tape 38.5 60 0.0013 17.5 3.1 48 34-83 10-66 (75)
237 COG1438 ArgR Arginine represso 38.4 47 0.001 20.7 2.9 31 55-85 19-49 (150)
238 PHA02142 putative RNA ligase 38.3 23 0.0005 25.3 1.7 29 45-73 274-302 (366)
239 cd08316 Death_FAS_TNFRSF6 Deat 37.9 80 0.0017 18.1 4.2 29 57-85 67-95 (97)
240 PF03484 B5: tRNA synthetase B 37.3 66 0.0014 16.9 3.2 18 56-73 18-35 (70)
241 PF09967 DUF2201: VWA-like dom 37.3 32 0.0007 20.4 2.0 18 52-69 6-23 (126)
242 PF11363 DUF3164: Protein of u 37.1 85 0.0018 20.3 4.0 37 46-85 125-161 (195)
243 PF08479 POTRA_2: POTRA domain 37.0 16 0.00035 19.4 0.6 27 57-83 14-41 (76)
244 PF04361 DUF494: Protein of un 36.9 1.1E+02 0.0023 19.1 6.1 44 40-85 3-47 (155)
245 PF02845 CUE: CUE domain; Int 36.9 51 0.0011 15.4 4.5 29 36-72 2-30 (42)
246 PF13623 SurA_N_2: SurA N-term 36.5 56 0.0012 20.1 3.0 21 62-82 95-115 (145)
247 TIGR03826 YvyF flagellar opero 36.4 1E+02 0.0022 18.9 5.3 45 35-84 25-69 (137)
248 smart00115 CASc Caspase, inter 36.3 80 0.0017 20.8 3.9 14 36-49 29-42 (241)
249 PF07848 PaaX: PaaX-like prote 36.3 49 0.0011 17.7 2.4 39 42-82 6-44 (70)
250 TIGR01201 HU_rel DNA-binding p 36.3 86 0.0019 19.1 3.8 30 55-85 29-58 (145)
251 COG4807 Uncharacterized protei 35.9 68 0.0015 19.8 3.2 36 39-83 90-125 (155)
252 KOG4070 Putative signal transd 35.9 63 0.0014 20.5 3.1 19 52-70 69-87 (180)
253 PF12174 RST: RCD1-SRO-TAF4 (R 35.8 75 0.0016 17.1 4.9 35 32-69 20-54 (70)
254 PF04539 Sigma70_r3: Sigma-70 35.2 72 0.0016 16.7 3.8 41 39-84 3-43 (78)
255 TIGR01837 PHA_granule_1 poly(h 35.2 80 0.0017 18.6 3.5 26 59-85 80-105 (118)
256 PLN02228 Phosphoinositide phos 34.7 1.8E+02 0.004 22.1 5.9 43 40-84 24-68 (567)
257 KOG3341 RNA polymerase II tran 34.5 98 0.0021 20.8 4.0 32 53-84 113-148 (249)
258 cd07178 terB_like_YebE telluri 34.2 73 0.0016 17.9 3.1 12 54-65 13-24 (95)
259 COG2511 GatE Archaeal Glu-tRNA 34.2 67 0.0015 24.5 3.5 34 53-86 533-582 (631)
260 COG3448 CBS-domain-containing 34.1 92 0.002 22.1 4.0 33 32-69 201-233 (382)
261 PF09061 Stirrup: Stirrup; In 34.0 27 0.00059 18.8 1.2 32 54-85 47-78 (79)
262 PF14098 SSPI: Small, acid-sol 33.5 82 0.0018 16.9 3.1 14 73-86 14-27 (65)
263 PRK12318 methionine aminopepti 33.3 1.6E+02 0.0034 20.1 5.0 42 35-85 45-86 (291)
264 COG4103 Uncharacterized protei 33.3 1.2E+02 0.0027 18.9 4.6 41 43-85 33-75 (148)
265 PF01799 Fer2_2: [2Fe-2S] bind 33.3 86 0.0019 17.0 3.7 48 36-83 8-57 (75)
266 PF05383 La: La domain; Inter 33.2 44 0.00096 17.4 1.9 23 43-65 18-40 (61)
267 PF02037 SAP: SAP domain; Int 33.0 56 0.0012 14.8 4.3 19 56-74 3-21 (35)
268 PF10892 DUF2688: Protein of u 32.7 80 0.0017 16.5 3.1 29 57-85 28-57 (60)
269 cd08315 Death_TRAILR_DR4_DR5 D 32.7 98 0.0021 17.5 4.5 28 56-83 64-91 (96)
270 PRK12897 methionine aminopepti 32.6 1.5E+02 0.0031 19.4 5.0 42 35-85 6-47 (248)
271 PF14297 DUF4373: Domain of un 32.5 42 0.00091 18.4 1.9 29 33-61 57-85 (87)
272 PF13592 HTH_33: Winged helix- 32.4 75 0.0016 16.1 3.4 17 56-72 21-37 (60)
273 PF13344 Hydrolase_6: Haloacid 32.3 27 0.00058 19.8 1.1 25 53-77 38-62 (101)
274 PF08002 DUF1697: Protein of u 32.2 49 0.0011 20.0 2.3 21 51-71 13-33 (137)
275 TIGR03092 SASP_sspI small, aci 32.2 85 0.0018 16.8 2.9 14 73-86 13-26 (65)
276 PRK07758 hypothetical protein; 32.1 47 0.001 19.1 2.0 19 54-72 75-93 (95)
277 PF09883 DUF2110: Uncharacteri 32.1 74 0.0016 21.2 3.2 42 31-72 141-183 (225)
278 PF05604 DUF776: Protein of un 32.0 37 0.00081 21.7 1.7 24 36-59 7-30 (178)
279 PF13835 DUF4194: Domain of un 31.9 1.3E+02 0.0027 18.5 5.0 54 32-85 70-134 (166)
280 PF04391 DUF533: Protein of un 31.9 74 0.0016 20.5 3.1 21 51-71 90-110 (188)
281 cd07313 terB_like_2 tellurium 31.8 96 0.0021 17.2 3.3 16 33-48 15-30 (104)
282 KOG2463 Predicted RNA-binding 31.8 30 0.00065 24.6 1.4 33 36-70 165-197 (376)
283 PF08100 Dimerisation: Dimeris 31.7 26 0.00057 17.6 0.9 38 45-84 11-49 (51)
284 PF07592 DDE_Tnp_ISAZ013: Rhod 31.7 96 0.0021 21.8 3.8 17 57-73 41-57 (311)
285 KOG2351 RNA polymerase II, fou 31.5 78 0.0017 19.3 2.9 26 60-85 102-127 (134)
286 cd00032 CASc Caspase, interleu 31.4 1.1E+02 0.0023 20.1 3.9 35 35-69 30-66 (243)
287 TIGR00158 L9 ribosomal protein 31.3 42 0.00091 20.7 1.9 24 55-78 91-114 (148)
288 PF08839 CDT1: DNA replication 31.3 1.3E+02 0.0029 18.6 4.2 46 38-83 4-56 (163)
289 COG2979 Uncharacterized protei 31.1 80 0.0017 21.0 3.2 34 51-84 121-154 (225)
290 PRK00137 rplI 50S ribosomal pr 31.0 50 0.0011 20.3 2.2 24 55-78 91-114 (147)
291 PF10668 Phage_terminase: Phag 30.7 51 0.0011 17.3 1.8 22 44-66 11-32 (60)
292 PF03250 Tropomodulin: Tropomo 30.7 1.4E+02 0.003 18.6 4.5 36 32-67 22-74 (147)
293 PRK06369 nac nascent polypepti 30.6 59 0.0013 19.4 2.3 19 55-73 3-21 (115)
294 PF04695 Pex14_N: Peroxisomal 30.5 1.3E+02 0.0028 18.1 6.4 42 42-85 6-47 (136)
295 COG0024 Map Methionine aminope 30.4 1.8E+02 0.0039 19.8 5.1 44 34-86 6-49 (255)
296 PRK13704 plasmid SOS inhibitio 30.2 81 0.0018 21.3 3.1 26 42-69 41-66 (240)
297 PF09012 FeoC: FeoC like trans 30.1 89 0.0019 16.2 3.2 28 54-86 12-39 (69)
298 PF09441 Abp2: ARS binding pro 30.1 1.4E+02 0.0031 19.0 4.1 33 37-69 33-65 (175)
299 COG2024 Phenylalanyl-tRNA synt 30.0 91 0.002 22.9 3.5 33 32-67 120-152 (536)
300 PRK02955 small acid-soluble sp 30.0 99 0.0021 16.7 3.3 14 73-86 16-29 (68)
301 PF03948 Ribosomal_L9_C: Ribos 29.8 69 0.0015 17.8 2.4 21 55-75 30-51 (87)
302 KOG1029 Endocytic adaptor prot 29.6 49 0.0011 26.4 2.2 40 27-69 39-78 (1118)
303 PF09987 DUF2226: Uncharacteri 29.5 85 0.0018 21.8 3.2 45 34-86 160-205 (297)
304 PF11181 YflT: Heat induced st 29.4 1.1E+02 0.0025 17.2 3.8 25 60-86 71-95 (103)
305 PRK07281 methionine aminopepti 29.4 1.9E+02 0.0041 19.7 5.1 42 35-85 6-47 (286)
306 PF15017 AF1Q: Drug resistance 29.2 34 0.00073 19.4 1.1 16 50-65 69-84 (87)
307 KOG4286 Dystrophin-like protei 29.1 62 0.0014 25.7 2.7 44 42-85 472-515 (966)
308 PF13276 HTH_21: HTH-like doma 28.8 87 0.0019 15.7 4.0 43 39-85 7-50 (60)
309 KOG2278 RNA:NAD 2'-phosphotran 28.7 68 0.0015 20.8 2.5 35 50-84 28-62 (207)
310 TIGR01446 DnaD_dom DnaD and ph 28.6 89 0.0019 16.2 2.7 13 34-46 13-25 (73)
311 PF10165 Ric8: Guanine nucleot 28.6 74 0.0016 23.1 3.0 28 32-59 405-434 (446)
312 PF09687 PRESAN: Plasmodium RE 28.6 1.2E+02 0.0026 17.2 4.0 29 57-85 6-34 (129)
313 PF06163 DUF977: Bacterial pro 28.5 1.4E+02 0.0031 18.1 5.4 49 32-86 3-51 (127)
314 PF13720 Acetyltransf_11: Udp 28.3 1.1E+02 0.0024 16.8 5.7 46 32-83 26-72 (83)
315 PF14165 YtzH: YtzH-like prote 28.0 1.2E+02 0.0027 17.2 5.3 49 37-86 5-56 (87)
316 cd07177 terB_like tellurium re 27.9 1E+02 0.0022 16.6 3.0 17 33-49 15-31 (104)
317 cd08032 LARP_7 La RNA-binding 27.9 1.2E+02 0.0025 16.9 3.3 32 34-65 17-48 (82)
318 TIGR03296 M6dom_TIGR03296 M6 f 27.8 26 0.00056 23.8 0.5 16 46-61 92-107 (286)
319 PF12363 DUF3647: Phage protei 27.7 99 0.0021 18.0 3.0 16 53-68 64-79 (113)
320 PF10415 FumaraseC_C: Fumarase 27.7 88 0.0019 15.9 2.4 20 62-82 28-47 (55)
321 PF01479 S4: S4 domain; Inter 27.6 80 0.0017 14.9 3.3 21 63-83 4-24 (48)
322 PF04273 DUF442: Putative phos 27.6 1.3E+02 0.0029 17.4 4.4 54 32-85 13-82 (110)
323 COG0735 Fur Fe2+/Zn2+ uptake r 27.4 1.5E+02 0.0033 18.0 5.0 49 33-86 18-66 (145)
324 PF09851 SHOCT: Short C-termin 27.3 70 0.0015 14.1 3.8 25 37-67 3-27 (31)
325 PF05099 TerB: Tellurite resis 27.2 72 0.0016 18.6 2.4 30 54-83 37-68 (140)
326 PF06294 DUF1042: Domain of Un 27.2 48 0.001 20.7 1.6 24 60-83 58-82 (158)
327 KOG0663 Protein kinase PITSLRE 27.0 1.2E+02 0.0026 22.0 3.6 27 60-86 161-187 (419)
328 PHA02517 putative transposase 27.0 1.9E+02 0.0041 19.0 4.9 43 39-85 32-74 (277)
329 cd02663 Peptidase_C19G A subfa 26.9 1.8E+02 0.004 19.4 4.5 48 37-84 22-74 (300)
330 COG0080 RplK Ribosomal protein 26.8 1.3E+02 0.0028 18.6 3.4 34 52-85 94-127 (141)
331 PHA03415 putative internal vir 26.7 1.4E+02 0.0031 24.0 4.3 39 41-82 90-128 (1019)
332 PF07261 DnaB_2: Replication i 26.7 1E+02 0.0023 15.9 3.3 22 47-68 3-24 (77)
333 PF12631 GTPase_Cys_C: Catalyt 26.6 1.1E+02 0.0024 16.2 4.5 44 40-83 23-70 (73)
334 PF08730 Rad33: Rad33; InterP 26.5 1.8E+02 0.0039 18.6 6.0 40 32-72 6-45 (170)
335 PF12243 CTK3: CTD kinase subu 26.3 1.6E+02 0.0035 18.0 4.6 38 50-87 98-137 (139)
336 COG5611 Predicted nucleic-acid 26.2 1.6E+02 0.0034 17.8 5.5 45 42-86 23-69 (130)
337 PF07492 Trehalase_Ca-bi: Neut 26.2 15 0.00032 16.6 -0.6 19 44-62 3-21 (30)
338 cd07176 terB tellurite resista 25.9 1.3E+02 0.0027 16.6 4.1 15 33-47 18-32 (111)
339 PF10083 DUF2321: Uncharacteri 25.9 1.7E+02 0.0037 18.5 3.8 42 31-72 95-137 (158)
340 smart00540 LEM in nuclear memb 25.9 95 0.0021 15.2 2.3 18 56-73 5-22 (44)
341 cd02657 Peptidase_C19A A subfa 25.8 1.5E+02 0.0033 19.7 4.0 32 37-69 44-75 (305)
342 PF14069 SpoVIF: Stage VI spor 25.7 1.3E+02 0.0028 16.7 4.2 48 34-86 10-61 (79)
343 cd00076 H4 Histone H4, one of 25.6 1.3E+02 0.0029 16.8 4.0 23 50-72 59-81 (85)
344 CHL00127 rpl11 ribosomal prote 25.6 89 0.0019 19.2 2.6 34 52-85 95-128 (140)
345 PF04963 Sigma54_CBD: Sigma-54 25.5 1.3E+02 0.0028 19.2 3.4 32 51-85 45-76 (194)
346 COG1321 TroR Mn-dependent tran 25.4 1.7E+02 0.0038 18.0 5.9 45 34-85 4-48 (154)
347 cd08313 Death_TNFR1 Death doma 25.3 1.3E+02 0.0028 16.6 3.3 23 57-81 9-31 (80)
348 PF07508 Recombinase: Recombin 25.0 1.3E+02 0.0028 16.4 4.8 44 37-84 2-51 (102)
349 cd02660 Peptidase_C19D A subfa 24.9 1.7E+02 0.0037 19.6 4.2 46 39-84 48-97 (328)
350 COG3415 Transposase and inacti 24.7 1.8E+02 0.0038 17.9 5.5 48 31-84 61-109 (138)
351 PF00216 Bac_DNA_binding: Bact 24.7 1.2E+02 0.0026 16.3 2.9 26 59-85 3-28 (90)
352 KOG3442 Uncharacterized conser 24.6 1.8E+02 0.0038 17.8 3.7 30 55-85 54-83 (132)
353 KOG0869 CCAAT-binding factor, 24.4 1.2E+02 0.0026 19.2 3.0 40 33-72 51-102 (168)
354 PF10548 P22_AR_C: P22AR C-ter 24.4 1.3E+02 0.0029 16.3 3.2 40 32-74 6-45 (74)
355 PF05901 Excalibur: Excalibur 24.4 40 0.00086 15.7 0.7 9 48-56 26-34 (37)
356 PF10557 Cullin_Nedd8: Cullin 24.1 1.2E+02 0.0026 15.8 3.5 34 54-87 20-56 (68)
357 PF07483 W_rich_C: Tryptophan- 23.9 86 0.0019 18.5 2.2 22 35-57 87-108 (109)
358 PRK14165 winged helix-turn-hel 23.8 2.2E+02 0.0049 18.7 5.7 44 38-86 3-46 (217)
359 PF08671 SinI: Anti-repressor 23.7 88 0.0019 14.0 3.0 14 70-83 14-27 (30)
360 PF13730 HTH_36: Helix-turn-he 23.6 1E+02 0.0023 14.9 6.5 50 33-87 2-51 (55)
361 PF14178 YppF: YppF-like prote 23.6 85 0.0019 16.5 1.9 15 55-69 35-49 (60)
362 cd08306 Death_FADD Fas-associa 23.6 1.3E+02 0.0029 16.5 2.9 26 55-80 58-83 (86)
363 TIGR02574 stabl_TIGR02574 puta 23.0 1.3E+02 0.0027 15.6 4.2 35 33-67 27-61 (63)
364 TIGR02384 RelB_DinJ addiction 23.0 1.5E+02 0.0032 16.3 3.1 24 33-62 8-31 (83)
365 PF06576 DUF1133: Protein of u 22.9 1.7E+02 0.0037 18.8 3.5 12 57-68 72-83 (176)
366 TIGR00264 alpha-NAC-related pr 22.8 64 0.0014 19.3 1.5 18 57-74 6-26 (116)
367 cd00349 Ribosomal_L11 Ribosoma 22.8 1.1E+02 0.0025 18.4 2.6 33 53-85 88-120 (131)
368 PF03683 UPF0175: Uncharacteri 22.7 1.1E+02 0.0024 16.4 2.4 24 57-80 46-71 (76)
369 PF07820 TraC: TraC-like prote 22.4 70 0.0015 18.3 1.5 48 37-86 9-56 (92)
370 PF02758 PYRIN: PAAD/DAPIN/Pyr 22.3 1.3E+02 0.0027 16.4 2.6 33 32-64 10-42 (83)
371 cd02668 Peptidase_C19L A subfa 22.2 1.4E+02 0.0031 20.2 3.3 31 37-67 52-82 (324)
372 PRK01736 hypothetical protein; 22.1 2.3E+02 0.0049 18.2 4.1 13 56-68 22-34 (190)
373 COG1059 Thermostable 8-oxoguan 22.1 1.2E+02 0.0026 19.9 2.8 21 55-75 69-89 (210)
374 COG1308 EGD2 Transcription fac 21.9 90 0.002 18.8 2.0 19 56-74 5-23 (122)
375 KOG3555 Ca2+-binding proteogly 21.8 93 0.002 22.5 2.3 31 40-70 282-312 (434)
376 PF13837 Myb_DNA-bind_4: Myb/S 21.7 1.5E+02 0.0032 15.8 4.8 52 34-85 4-63 (90)
377 COG0776 HimA Bacterial nucleoi 21.6 1.7E+02 0.0038 16.7 3.7 28 57-85 2-29 (94)
378 PF12554 MOZART1: Mitotic-spin 21.6 1.3E+02 0.0027 15.1 4.7 42 40-85 6-47 (48)
379 COG0359 RplI Ribosomal protein 21.6 72 0.0016 19.9 1.6 24 55-78 91-114 (148)
380 PF04221 RelB: RelB antitoxin; 21.6 1.3E+02 0.0028 16.4 2.5 14 36-49 10-23 (83)
381 PLN03158 methionine aminopepti 21.3 3.2E+02 0.007 19.7 6.7 43 34-85 138-180 (396)
382 TIGR03853 matur_matur probable 21.3 1.6E+02 0.0035 16.3 4.0 23 60-82 5-27 (77)
383 COG1400 SEC65 Signal recogniti 21.3 96 0.0021 17.8 2.0 17 57-73 32-48 (93)
384 TIGR02146 LysS_fung_arch homoc 21.1 2.3E+02 0.005 19.3 4.2 29 57-85 314-342 (344)
385 TIGR00084 ruvA Holliday juncti 21.1 2.3E+02 0.0049 18.2 3.9 25 59-85 147-171 (191)
386 PF07223 DUF1421: Protein of u 21.1 1.9E+02 0.0041 20.7 3.8 29 57-87 319-347 (358)
387 KOG0719 Molecular chaperone (D 21.0 2.8E+02 0.0062 18.9 4.6 13 74-86 153-165 (264)
388 PF14337 DUF4393: Domain of un 20.9 1.6E+02 0.0036 18.3 3.2 22 64-85 21-42 (186)
389 TIGR00987 himA integration hos 20.9 1.7E+02 0.0037 16.3 3.6 28 57-85 2-29 (96)
390 PF00298 Ribosomal_L11: Riboso 20.8 1.2E+02 0.0026 16.2 2.2 15 54-68 27-41 (69)
391 PF14144 DOG1: Seed dormancy c 20.6 1.7E+02 0.0036 16.1 3.7 25 60-86 4-28 (80)
392 PF01984 dsDNA_bind: Double-st 20.6 1.3E+02 0.0028 17.5 2.5 18 54-71 78-95 (107)
393 PF05321 HHA: Haemolysin expre 20.6 1.2E+02 0.0025 15.8 2.0 20 62-81 12-31 (57)
394 PRK14734 coaE dephospho-CoA ki 20.5 2.4E+02 0.0052 17.9 4.1 28 39-66 46-73 (200)
395 PRK10356 hypothetical protein; 20.5 3E+02 0.0065 19.0 6.5 40 33-72 110-149 (274)
396 PRK11235 bifunctional antitoxi 20.4 1.7E+02 0.0037 16.2 3.0 16 34-49 8-23 (80)
397 TIGR03791 TTQ_mauG tryptophan 20.4 2.2E+02 0.0048 19.6 3.9 13 71-83 261-273 (291)
398 PF13624 SurA_N_3: SurA N-term 20.3 1.8E+02 0.004 17.2 3.3 22 64-85 91-112 (154)
399 COG1104 NifS Cysteine sulfinat 20.3 49 0.0011 23.8 0.8 19 50-68 122-140 (386)
400 PRK10945 gene expression modul 20.3 1.7E+02 0.0037 16.0 4.0 25 59-83 21-45 (72)
401 KOG2616 Pyridoxalphosphate-dep 20.2 2.5E+02 0.0054 19.1 4.0 53 35-87 112-165 (266)
402 cd02661 Peptidase_C19E A subfa 20.2 2.6E+02 0.0057 18.3 4.2 32 39-70 47-78 (304)
403 PRK14606 ruvA Holliday junctio 20.0 2.5E+02 0.0054 18.0 3.9 25 59-85 143-167 (188)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.21 E-value=7.8e-11 Score=73.46 Aligned_cols=59 Identities=39% Similarity=0.516 Sum_probs=54.9
Q ss_pred cccCCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 28 RGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
......++.+++.+|+++|..||+|++|.|+..+|..+|+.+|.+++..++..|+..+.
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d 66 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEID 66 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhcc
Confidence 34457899999999999999999999999999999999999999999999999998865
No 2
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.20 E-value=5.7e-11 Score=73.39 Aligned_cols=54 Identities=30% Similarity=0.385 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..+++.++.+++++|.++|.|++|.|+.+||+.+|.++|...++++|+.|++++
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea 77 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA 77 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 568999999999999999999999999999999999999999999999999875
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.16 E-value=9.3e-11 Score=73.12 Aligned_cols=51 Identities=33% Similarity=0.514 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 36 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.+..++|+.+|+.||.|++|+|+..+|+.+|+.+|..++.++|+.||+.++
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d 138 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYD 138 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcC
Confidence 345788999999999999999999999999999999999999999999876
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.09 E-value=6.1e-10 Score=68.56 Aligned_cols=53 Identities=45% Similarity=0.634 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
++.++..+++.+|..||.+++|+|+..+|+.+|+.+|.+++..++..++++++
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D 54 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEID 54 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 56788899999999999999999999999999999999999999999999875
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.06 E-value=4.6e-10 Score=69.10 Aligned_cols=49 Identities=37% Similarity=0.612 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 38 KKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
..++++++|+.||.|++|+|++.||+.+|..+|.+.+.++++.+|+.++
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d 131 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVD 131 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcC
Confidence 4668999999999999999999999999999999999999999998764
No 6
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=99.03 E-value=4.7e-10 Score=51.43 Aligned_cols=29 Identities=52% Similarity=0.833 Sum_probs=26.9
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
+++.+|+.||+|++|+|+.+|+..+|+.|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 57899999999999999999999999865
No 7
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=99.00 E-value=6.9e-10 Score=51.43 Aligned_cols=30 Identities=50% Similarity=0.943 Sum_probs=27.0
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHH-HhC
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMR-ALG 70 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~-~lg 70 (87)
+|+.+|+.||.|++|+|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 488999999999999999999999999 676
No 8
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.00 E-value=2.5e-09 Score=60.76 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHHh
Q 048414 37 QKKQEIKEAFELFD-TDGSG-TIDAKELNVAMRA-----LGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 37 ~~~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-----lg~~~~~~ei~~li~~~~ 86 (87)
.-+..|+++|+.|| ++++| +|+.+||+.+|+. +|...++++++.+|+.++
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D 61 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLD 61 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhC
Confidence 45678999999998 89999 5999999999999 899999999999999875
No 9
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.98 E-value=1.7e-09 Score=61.60 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhhCC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHHHh
Q 048414 36 QQKKQEIKEAFELFDT-DGSGTIDAKELNVAMRA-LGFEMTE-EHGIVLVCTIV 86 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~-d~~G~I~~~el~~~l~~-lg~~~~~-~ei~~li~~~~ 86 (87)
+.-+..++.+|+.||+ +++|+|+..||+.+|.. +|..++. .+++.||+.++
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D 57 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLD 57 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhC
Confidence 3457789999999999 99999999999999999 9988888 99999998875
No 10
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.95 E-value=5.1e-09 Score=60.06 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.++.+++..++.+|..||.+++|.|+.++|+.+|+.+| ++.++++.++..++
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d 54 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLAD 54 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999976 68889999988753
No 11
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.89 E-value=6.9e-09 Score=55.31 Aligned_cols=45 Identities=40% Similarity=0.660 Sum_probs=38.8
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.|+++|..||.|++|+|+.+||..++..++...+..+++.++..+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~ 45 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQI 45 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 478999999999999999999999999999888777777764443
No 12
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.89 E-value=5.2e-09 Score=63.78 Aligned_cols=51 Identities=31% Similarity=0.521 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVC 83 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~ 83 (87)
.++.++..+++++|..||..++|+|+..++.++|+.+|.++++.++.+.+.
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~ 54 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLG 54 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHc
Confidence 456778899999999999999999999999999999999999999977654
No 13
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=7.5e-09 Score=64.36 Aligned_cols=62 Identities=50% Similarity=0.700 Sum_probs=55.6
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 25 DKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 25 ~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.........+++++..+++.+|..||.+++|+|+++||+.+++.+|+.+..++|..|+.+++
T Consensus 18 ~~~~~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~d 79 (172)
T KOG0028|consen 18 AKPASPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVD 79 (172)
T ss_pred hccCCCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhh
Confidence 44444457889999999999999999999999999999999999999999999999998765
No 14
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.83 E-value=1.2e-08 Score=63.47 Aligned_cols=50 Identities=34% Similarity=0.553 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
+..++++.+|+.||.|++|.|+..+|+.+.+.||.+++.+++.+||.+++
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd 152 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEAD 152 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhc
Confidence 35788999999999999999999999999999999999999999999875
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.78 E-value=3.1e-08 Score=56.61 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhhCC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHHh
Q 048414 38 KKQEIKEAFELFDT-DG-SGTIDAKELNVAMRA-----LGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 38 ~~~~l~~~F~~~D~-d~-~G~I~~~el~~~l~~-----lg~~~~~~ei~~li~~~~ 86 (87)
-...|+.+|..||. |+ +|+|+.+||+.+|+. +|..++..+++.+++.++
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D 61 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLD 61 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhC
Confidence 46789999999997 97 699999999999986 577889999999998774
No 16
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.78 E-value=2.4e-08 Score=64.31 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=58.5
Q ss_pred CccccccccCCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Q 048414 22 SRKDKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIVE 87 (87)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~e 87 (87)
......+...+.++..+++.+..+|+.||.+.||+|+..||+.+|..||.+-|.--+..||.+++|
T Consensus 81 ~kv~n~yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVde 146 (244)
T KOG0041|consen 81 LKVFNVYTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDE 146 (244)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhc
Confidence 444555666678999999999999999999999999999999999999998888888999999875
No 17
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.78 E-value=4.3e-08 Score=55.75 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhhC-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHHHh
Q 048414 38 KKQEIKEAFELFD-TDGSG-TIDAKELNVAMRA-LG----FEMTEEHGIVLVCTIV 86 (87)
Q Consensus 38 ~~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-lg----~~~~~~ei~~li~~~~ 86 (87)
-++.++++|+.|| .+++| +|+..||+.+|+. +| ..++..+++.+|+.++
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D 62 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELD 62 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHC
Confidence 4578999999997 99999 5999999999986 54 3568899999998875
No 18
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.76 E-value=2.6e-08 Score=64.56 Aligned_cols=48 Identities=31% Similarity=0.502 Sum_probs=43.9
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
+..|+.+|+.||+|++|.|+..||+.+|..+|+.++.+-++-|++...
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd 170 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYD 170 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhc
Confidence 567999999999999999999999999999999999998888887643
No 19
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.75 E-value=4e-08 Score=55.31 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhhCC--CCCCcccHHHHHHHHHH-hCCCC----CHHHHHHHHHHHh
Q 048414 36 QQKKQEIKEAFELFDT--DGSGTIDAKELNVAMRA-LGFEM----TEEHGIVLVCTIV 86 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~--d~~G~I~~~el~~~l~~-lg~~~----~~~ei~~li~~~~ 86 (87)
+++++.++.+|..||. +++|+|+.++|..+++. +|..+ +..+++.++..++
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d 61 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLD 61 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhc
Confidence 4678889999999999 89999999999999986 56544 5899999988763
No 20
>PTZ00183 centrin; Provisional
Probab=98.73 E-value=1.1e-07 Score=57.84 Aligned_cols=55 Identities=56% Similarity=0.904 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 31 HHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 31 ~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
...++++++.+++.+|..+|.+++|.|+..||..+|+.+|..++...+..++..+
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~ 62 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADV 62 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999888888888888765
No 21
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.66 E-value=1.5e-07 Score=53.45 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhhCC-CC-CCcccHHHHHHHHH---HhCCCCCHHHHHHHHHHHh
Q 048414 36 QQKKQEIKEAFELFDT-DG-SGTIDAKELNVAMR---ALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~-d~-~G~I~~~el~~~l~---~lg~~~~~~ei~~li~~~~ 86 (87)
+..+..+..+|+.||. ++ +|+|+.+||+.+|. .+|.+++.++++++++.++
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D 61 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLD 61 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 4456789999999998 67 89999999999997 3799999999999998875
No 22
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.63 E-value=9.8e-08 Score=50.59 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=37.9
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
++++|..+|.+++|.|+.+|+..+|+.+|. +.++++.++..+.
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d 43 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLAD 43 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhc
Confidence 367899999999999999999999999875 8888999988764
No 23
>PTZ00184 calmodulin; Provisional
Probab=98.63 E-value=2.4e-07 Score=55.66 Aligned_cols=54 Identities=43% Similarity=0.631 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..+++++.+.++..|..+|.+++|.|+.++|..+|..+|..++..++..++..+
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEV 56 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhc
Confidence 457889999999999999999999999999999999999888888888888754
No 24
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.60 E-value=1.4e-07 Score=58.45 Aligned_cols=48 Identities=29% Similarity=0.411 Sum_probs=44.9
Q ss_pred HHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 38 KKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.++.+..+|+.||.++.|+|..+.|+.+|..+|.+++.++|+.|++..
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~ 146 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREA 146 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhC
Confidence 367799999999999999999999999999999999999999998864
No 25
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.59 E-value=2.9e-07 Score=52.66 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhhC-CCCCC-cccHHHHHHHHHH-h----CCCCCHHHHHHHHHHHh
Q 048414 37 QKKQEIKEAFELFD-TDGSG-TIDAKELNVAMRA-L----GFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 37 ~~~~~l~~~F~~~D-~d~~G-~I~~~el~~~l~~-l----g~~~~~~ei~~li~~~~ 86 (87)
.-+..++.+|+.|| +|++| +|+..||+.+|+. + +...+..++++++++++
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD 63 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLD 63 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhC
Confidence 44678899999999 78998 5999999999976 3 33457789999999875
No 26
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.53 E-value=1.5e-07 Score=41.60 Aligned_cols=25 Identities=44% Similarity=0.787 Sum_probs=22.6
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l 66 (87)
|+++|..+|.|++|.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5789999999999999999999864
No 27
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.47 E-value=3.5e-07 Score=55.88 Aligned_cols=48 Identities=31% Similarity=0.477 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
-..+++.+.++.||++++|+|...+|+.+|..+|..++++|++.++.-
T Consensus 85 ~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag 132 (152)
T KOG0030|consen 85 GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAG 132 (152)
T ss_pred CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcc
Confidence 346778999999999999999999999999999999999999999864
No 28
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.44 E-value=1.2e-06 Score=44.63 Aligned_cols=44 Identities=43% Similarity=0.718 Sum_probs=40.7
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
++.+|+.+|.+++|.|+.+++..+++.++...+...+..++..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 45 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREV 45 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999888765
No 29
>PTZ00183 centrin; Provisional
Probab=98.37 E-value=2e-06 Score=52.32 Aligned_cols=48 Identities=33% Similarity=0.485 Sum_probs=43.9
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
...++.+|+.||.+++|+|+..|+..+|..+|..++..++..++..+.
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d 136 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEAD 136 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 356899999999999999999999999999999999999999998764
No 30
>PF14658 EF-hand_9: EF-hand domain
Probab=98.34 E-value=1.2e-06 Score=47.16 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=40.0
Q ss_pred HHhhhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Q 048414 44 EAFELFDTDGSGTIDAKELNVAMRALGF-EMTEEHGIVLVCTIV 86 (87)
Q Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~lg~-~~~~~ei~~li~~~~ 86 (87)
.+|..||.++.|.|...+|..+|+.+|. .+++.+++.+.++++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elD 45 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELD 45 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhC
Confidence 3799999999999999999999999998 899999999998875
No 31
>PTZ00184 calmodulin; Provisional
Probab=98.29 E-value=3.3e-06 Score=50.62 Aligned_cols=48 Identities=42% Similarity=0.590 Sum_probs=43.5
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.+.++.+|+.||.+++|+|+..++..+|..+|..++.+++..++..++
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 130 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcC
Confidence 356889999999999999999999999999999999999999988763
No 32
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.16 E-value=1.4e-05 Score=45.43 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhh-hCCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHHh
Q 048414 36 QQKKQEIKEAFEL-FDTDGSG-TIDAKELNVAMRAL-----GFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 36 ~~~~~~l~~~F~~-~D~d~~G-~I~~~el~~~l~~l-----g~~~~~~ei~~li~~~~ 86 (87)
+..+..|..+|+. +|++++| +|+.+||+.+|... +...+..+++.+++.++
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D 62 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLD 62 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcC
Confidence 3457789999999 7788876 99999999999875 34567789999998764
No 33
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.06 E-value=1.4e-05 Score=51.15 Aligned_cols=46 Identities=28% Similarity=0.452 Sum_probs=37.7
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCCCC--HHHHHHHHHHH
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRAL-GFEMT--EEHGIVLVCTI 85 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-g~~~~--~~ei~~li~~~ 85 (87)
++++-+|+.||.+++|+|+.+||..++..+ |...+ .+.+..++..+
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t 152 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKT 152 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 689999999999999999999999999986 55555 66666665544
No 34
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=98.02 E-value=8.5e-06 Score=35.26 Aligned_cols=28 Identities=54% Similarity=0.894 Sum_probs=25.2
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
+++.+|+.+|.+++|.|+..++..+++.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3678999999999999999999998875
No 35
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.00 E-value=2.4e-05 Score=55.21 Aligned_cols=52 Identities=21% Similarity=0.387 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 35 SQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 35 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
-.+.+.++..+|..+|.++||.|+.+|+...|+.+|.+++.+++..+++.++
T Consensus 77 ~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d 128 (463)
T KOG0036|consen 77 LDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMD 128 (463)
T ss_pred HHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhc
Confidence 3566778999999999999999999999999999999999999999988775
No 36
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.92 E-value=5.7e-05 Score=44.96 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 35 SQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 35 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.......+..+|..+|.|++|+|+.+||..++ .......+..+|+.++
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D 90 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCD 90 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHC
Confidence 56677889999999999999999999999876 2334566677776654
No 37
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.87 E-value=5.6e-05 Score=42.69 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhhCCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHHHh
Q 048414 37 QKKQEIKEAFELFDTD--GSGTIDAKELNVAMR-ALGFEMT----EEHGIVLVCTIV 86 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d--~~G~I~~~el~~~l~-~lg~~~~----~~ei~~li~~~~ 86 (87)
.-+..+..+|+.|+.. ++|+|+.+||+.+|. .+|..++ ..+++.++..++
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D 61 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLD 61 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcC
Confidence 4567889999999965 479999999999997 6676676 899999998764
No 38
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.80 E-value=6.7e-05 Score=38.26 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHHh
Q 048414 53 GSGTIDAKELNVAMRALGFE-MTEEHGIVLVCTIV 86 (87)
Q Consensus 53 ~~G~I~~~el~~~l~~lg~~-~~~~ei~~li~~~~ 86 (87)
++|.|+.++|+.+|..+|.. ++.++++.++..++
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D 35 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFD 35 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHT
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcc
Confidence 47999999999999889999 99999999998875
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=97.75 E-value=0.0001 Score=54.75 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC-CCCCHHH---HHHHHHHH
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALG-FEMTEEH---GIVLVCTI 85 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg-~~~~~~e---i~~li~~~ 85 (87)
.++..++++++++|..||.|++|+| |+.+|+.+| ..+++.+ ++.+++.+
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~ 188 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIV 188 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 4556666667777777777766665 666666666 3566555 55665554
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=97.68 E-value=0.00022 Score=53.13 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.++++...+..+|+.+|.|++|.|+.+|+..+|..+|...+++++..+++.++
T Consensus 173 pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fD 225 (644)
T PLN02964 173 PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAAD 225 (644)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhC
Confidence 44555556999999999999999999999999999988888999999988765
No 41
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.67 E-value=0.00011 Score=37.42 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=25.9
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
+++..+|..+|.+++|+|+.+|+..+|..
T Consensus 25 ~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 25 EEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 34889999999999999999999998864
No 42
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.47 E-value=0.00015 Score=45.02 Aligned_cols=47 Identities=26% Similarity=0.458 Sum_probs=39.7
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHHhC
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRALGF-EMTEEHGIVLVCTIVE 87 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~-~~~~~ei~~li~~~~e 87 (87)
+..-+|++||-|++++|..++|...+..+.. .++.+++..++..++|
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvie 156 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIE 156 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 3566799999999999999999999999853 5899998887777664
No 43
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.36 E-value=0.00048 Score=55.27 Aligned_cols=59 Identities=22% Similarity=0.504 Sum_probs=48.4
Q ss_pred ccccCCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCC--HH-----HHHHHHHHH
Q 048414 27 IRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT--EE-----HGIVLVCTI 85 (87)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~--~~-----ei~~li~~~ 85 (87)
...+....+++.+.++.-+|+.||++.+|.++..+++.||+++|++++ ++ +++.++..+
T Consensus 2240 qarn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~v 2305 (2399)
T KOG0040|consen 2240 QARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLV 2305 (2399)
T ss_pred HhhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhc
Confidence 344557789999999999999999999999999999999999999873 22 455555443
No 44
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.34 E-value=0.00054 Score=36.06 Aligned_cols=29 Identities=38% Similarity=0.550 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhhCCCCCCcccHHHHHHHH
Q 048414 38 KKQEIKEAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l 66 (87)
..+.+..+|+.+|.|++|.|+.+|+..++
T Consensus 38 ~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 38 SDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 33567888999999999999999998764
No 45
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.06 E-value=0.0018 Score=47.29 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHHHH
Q 048414 31 HHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM---TEEHGIVLVCT 84 (87)
Q Consensus 31 ~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~---~~~ei~~li~~ 84 (87)
...++++++..+++.|..+| +++|+|+..+|..++...+... ..++++.++..
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~ 65 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGE 65 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhc
Confidence 36789999999999999999 9999999999999999887543 45666666554
No 46
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.01 E-value=0.0024 Score=37.34 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
..+++++...+..+|..+|. ++|+|+.++.+.+|..-| ++.+.+..|+.-++
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD 53 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLAD 53 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhc
Confidence 35677788888888888875 578888888888887665 56677777776554
No 47
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.98 E-value=0.0043 Score=40.64 Aligned_cols=49 Identities=24% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Q 048414 38 KKQEIKEAFELFDTDGSGTIDAKELNVAMRALG-FEMTEEHGIVLVCTIV 86 (87)
Q Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg-~~~~~~ei~~li~~~~ 86 (87)
....+...|...|+|+.|.|+.+||..+|...+ ..++.+.++-||...+
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd 104 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFD 104 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhc
Confidence 345689999999999999999999999998664 4688889998887543
No 48
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=96.86 E-value=0.00091 Score=43.11 Aligned_cols=31 Identities=35% Similarity=0.631 Sum_probs=25.7
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
.+.++-+|+.||.|++|+|+.+|+-.++.++
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 4456677999999999999999988877764
No 49
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.67 E-value=0.0039 Score=35.43 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=27.9
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
..++..+++.+|.|++|.|+.+|+..++..+.
T Consensus 52 ~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 52 PMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 35688899999999999999999999887763
No 50
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.63 E-value=0.0044 Score=35.18 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=27.7
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
+++.++|+.+|.|++|.|+.+|+..++..+.
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 6789999999999999999999999887653
No 51
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.55 E-value=0.0061 Score=45.05 Aligned_cols=60 Identities=12% Similarity=0.044 Sum_probs=53.6
Q ss_pred cccCCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Q 048414 28 RGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIVE 87 (87)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~e 87 (87)
......++.++...++.-|..+|.|+.|+++..++..+|+..+.+++.+.++++++++++
T Consensus 581 ~~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~ 640 (680)
T KOG0042|consen 581 MSIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADE 640 (680)
T ss_pred cccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 334467899999999999999999999999999999999999989999999999888763
No 52
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.011 Score=42.07 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE-MTEEHGIVLVCT 84 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~-~~~~ei~~li~~ 84 (87)
....++....++..|+.||.+++|.|+..+|...|..++.. ...+-...++..
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~ 59 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSA 59 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHh
Confidence 35667777889999999999999999999999999998766 444444555544
No 53
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.39 E-value=0.0085 Score=33.84 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=26.2
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
+++.++|+.+|.|++|.|+.+|+..++..+.
T Consensus 51 ~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 51 AEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 4567778999999999999999998887653
No 54
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.37 E-value=0.0033 Score=35.61 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCC
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGF 71 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~ 71 (87)
.+++..+|+.+|.+++|.|+.+++..++..+++
T Consensus 50 ~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 50 PMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 346888899999999999999999999887664
No 55
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.36 E-value=0.0075 Score=34.16 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
..++..+|+.+|.|++|.|+.+|+..++..+.
T Consensus 51 ~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 51 PGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 35677889999999999999999998887653
No 56
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.30 E-value=0.0095 Score=33.50 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
..++..+|+.+|.+++|.|+.+++..++..+.
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 46688899999999999999999999887653
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.25 E-value=0.0083 Score=35.69 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=23.5
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHH
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l 66 (87)
.+...|..+|.|++|.|+.+|+..+|
T Consensus 81 ~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 81 CIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 34678999999999999999999988
No 58
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.15 E-value=0.013 Score=32.95 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
..++..+|+.+|.+++|.|+.+++..++..+.
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 35688899999999999999999999887653
No 59
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.10 E-value=0.019 Score=41.57 Aligned_cols=45 Identities=22% Similarity=0.431 Sum_probs=36.0
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHHH
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRAL----GFEMTEEHGIVLVCTI 85 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l----g~~~~~~ei~~li~~~ 85 (87)
.|..+|+.+|.|++|.|+.+|++.+.+-+ ...++.++|.++-+.+
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~m 596 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSM 596 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhh
Confidence 47789999999999999999999877655 4467777777765544
No 60
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.96 E-value=0.024 Score=29.00 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=24.7
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
-...+|+..|++++|.+..+|+..+++.|
T Consensus 22 yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 22 YARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 45678999999999999999999988765
No 61
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.93 E-value=0.021 Score=29.59 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=26.2
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
.+.+..+|+.+|.+++|.|+.+++..++..+
T Consensus 32 ~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 32 RSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 3457888999999999999999998887654
No 62
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.88 E-value=0.095 Score=29.96 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHH-h----CCCCCHHHHHHHHHHHhC
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRA-L----GFEMTEEHGIVLVCTIVE 87 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-l----g~~~~~~ei~~li~~~~e 87 (87)
.-+..+..+|+.|-. +.|.++..||+.+|.. + +-.-.+..|+.+++.++.
T Consensus 5 ~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~ 59 (91)
T cd05024 5 HSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDD 59 (91)
T ss_pred HHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCC
Confidence 346778999999984 4579999999999874 2 334467889999988763
No 63
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.83 E-value=0.025 Score=32.03 Aligned_cols=37 Identities=24% Similarity=0.541 Sum_probs=29.3
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHh-----CCCCCHH
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRAL-----GFEMTEE 76 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-----g~~~~~~ 76 (87)
+++..+|..+|.+++|+|+.+++..++..+ |.+++.+
T Consensus 44 ~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~ 85 (96)
T smart00027 44 TLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPAS 85 (96)
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 357788999999999999999999877753 6665543
No 64
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.70 E-value=0.023 Score=28.15 Aligned_cols=28 Identities=39% Similarity=0.564 Sum_probs=23.6
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l 66 (87)
.+.+..+|..+|.+++|.|+.+++..++
T Consensus 35 ~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 35 EEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3457778999999999999999998765
No 65
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.54 E-value=0.032 Score=39.61 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=32.5
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHH---HHHHHhCC----CCCHHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELN---VAMRALGF----EMTEEHGIVLVCTI 85 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~---~~l~~lg~----~~~~~ei~~li~~~ 85 (87)
...++.+|+.||.+++|+|+.+|+. .++..+.. .++.+++..++..+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLGSDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3467888999999999999999874 34444421 36677776666544
No 66
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.53 E-value=0.035 Score=31.27 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
.+++..+++.+|.|++|.|+.+++..++..+
T Consensus 50 ~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 50 QEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3457888889999999999999999888764
No 67
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.52 E-value=0.066 Score=38.05 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
..++.++......+|..+|.|++|.|+.+|+..+++.
T Consensus 349 G~Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 349 GFITREEWLGSDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred CcCcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3566776655688999999999999999999998875
No 68
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.48 E-value=0.065 Score=34.42 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHhhhhCCC-CCCcccHHHHHHHHHHhCCCCCHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTD-GSGTIDAKELNVAMRALGFEMTEEHG 78 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d-~~G~I~~~el~~~l~~lg~~~~~~ei 78 (87)
..++..+++.|...|..+|.+ ++|+|+.+|+..+. .+..++=.+.|
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI 71 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRI 71 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHH
Confidence 348899999999999999999 99999999999988 44444433333
No 69
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.48 E-value=0.099 Score=28.71 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=35.4
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHh-CC-CCCHHHHHHHHHH
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRAL-GF-EMTEEHGIVLVCT 84 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l-g~-~~~~~ei~~li~~ 84 (87)
++..+|..|-. +.+.++.++|...|+.- |. .++.+++..+|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~ 45 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEK 45 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHH
Confidence 47889999955 78999999999999865 43 4689999999875
No 70
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.42 E-value=0.04 Score=30.57 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
..++..+|..+|.+++|.|+.+++..++..+
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3457888999999999999999999988765
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.22 E-value=0.045 Score=31.27 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
...+.++|+.+|.|+||.|+.+|+..++..+.
T Consensus 47 ~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 47 PMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 44578899999999999999999998887653
No 72
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.97 E-value=0.077 Score=28.80 Aligned_cols=27 Identities=19% Similarity=0.478 Sum_probs=23.4
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l 66 (87)
-+++..+|+.+ .++.++|+..||+..|
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 35789999999 7788999999999875
No 73
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=93.82 E-value=0.17 Score=32.74 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 38 KKQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
...-...+|+.||.|++|+|+..|+..+|..+
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~ 93 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFICALSLT 93 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH
Confidence 34446778899999999999999977766543
No 74
>PF14658 EF-hand_9: EF-hand domain
Probab=93.53 E-value=0.18 Score=27.15 Aligned_cols=30 Identities=20% Similarity=0.493 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhCCCCC-CcccHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGS-GTIDAKELNVAMRA 68 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~-G~I~~~el~~~l~~ 68 (87)
..+|+...+.+|+++. |.|+.+++..+|+.
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3478888999999998 99999999999875
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=93.50 E-value=0.16 Score=29.61 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=29.4
Q ss_pred cccCCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 28 RGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
......++. +.|..++...|.+++|+++.+|+.-+|.-+
T Consensus 34 ~f~~S~L~~---~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 34 FFMKSGLPR---DVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHTTSSH---HHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHcCCCH---HHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 344466765 457888899999999999999999877643
No 76
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=93.46 E-value=0.39 Score=28.33 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=37.9
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+..+|=+++.-++-.-+..++..+|..+|.....+.++.+|.++
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 45567777888888899999999999999999999999998765
No 77
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.11 Score=36.76 Aligned_cols=43 Identities=21% Similarity=0.422 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVL 81 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~l 81 (87)
.+.++++|+.+|+.++|+|+.+-++.+|..++..+++.+.-.+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l 350 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVML 350 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHH
Confidence 5679999999999999999999999999988855555443333
No 78
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=93.23 E-value=0.29 Score=25.01 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=23.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
+++..|++.+|+.+++.+++.-+..+++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D 31 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECD 31 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhc
Confidence 3678899999999999999999999998875
No 79
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=93.18 E-value=0.3 Score=26.15 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
-|+.+-++.++..+|.++++..|.++++.+
T Consensus 31 pine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 31 PINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 699999999999999999999999998865
No 80
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=92.90 E-value=0.057 Score=38.91 Aligned_cols=28 Identities=36% Similarity=0.744 Sum_probs=24.2
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHH
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMR 67 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~ 67 (87)
..++-+|++||.|++|-|+.+|+..+..
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~ 260 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQ 260 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHH
Confidence 3467789999999999999999987763
No 81
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.38 E-value=0.75 Score=25.02 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 44 EAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
+.|..+=+|+ =-|+.+-++.++..+|.++++..|+++++.+.
T Consensus 27 k~~~k~lk~N-Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 27 KQMKKQLKDN-PPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHhhC-CCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3344443443 36999999999999999999999999998764
No 82
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.13 E-value=0.5 Score=36.89 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTE 75 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~ 75 (87)
...++....+|+..|+.+|+...|..+.+++..+|..+|.+...
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ 782 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEE 782 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccch
Confidence 45778889999999999999999999999999999999988765
No 83
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.63 E-value=0.48 Score=35.46 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
..++..-...+..+|..||.|+||-++..||..++...+
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 678888899999999999999999999999999998764
No 84
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=91.58 E-value=0.3 Score=31.08 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=30.6
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCH
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTE 75 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~ 75 (87)
..|++=..-||+|+||.|...|--..++.+|+++--
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~ 42 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILL 42 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHH
Confidence 346677778999999999999999999999987643
No 85
>PRK00523 hypothetical protein; Provisional
Probab=91.37 E-value=0.9 Score=24.85 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=31.9
Q ss_pred HHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 44 EAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+.|..+=+++ =-|+.+-++.++..+|.++++..++++++.+
T Consensus 28 k~~~k~l~~N-Ppine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 28 KMFKKQIREN-PPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHC-cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3344443333 3699999999999999999999999998765
No 86
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.36 E-value=1.1 Score=33.71 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRA-LGFEMTEEHGIVLVCT 84 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-lg~~~~~~ei~~li~~ 84 (87)
..+...-...|..+|+..|.|++|.++..||..+=+. ++-++...+++.+...
T Consensus 187 qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~v 240 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNV 240 (625)
T ss_pred ccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHH
Confidence 5677788899999999999999999999999876443 5777887777665443
No 87
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=91.30 E-value=0.096 Score=37.79 Aligned_cols=27 Identities=30% Similarity=0.620 Sum_probs=24.4
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
+--+|++||.|+||.++.+|+-.+|+.
T Consensus 427 vdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 427 VDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred eeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 455799999999999999999999986
No 88
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=90.82 E-value=1.3 Score=26.29 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=35.1
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+..+|-..-.-++..++.+++..+|+..|..+....+..+++.+
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L 48 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 34455556666777899999999999999999998888887664
No 89
>PRK01844 hypothetical protein; Provisional
Probab=90.04 E-value=1.4 Score=24.15 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=27.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
-|+.+-++..+..+|.++++..++++++.+
T Consensus 38 pine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 699999999999999999999999998764
No 90
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=89.89 E-value=0.077 Score=31.33 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 36 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
......+.-.|..+|.|++|.++..||..+...+
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l 83 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL 83 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH
Confidence 3445567777999999999999999998765533
No 91
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.28 E-value=1.2 Score=26.84 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh------CC---C-CCHHHHHHHHHHHh
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL------GF---E-MTEEHGIVLVCTIV 86 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l------g~---~-~~~~ei~~li~~~~ 86 (87)
.+++++++. --.|++.|-|++|+++.-||..++.-. |. + .++.|+..||..+.
T Consensus 61 a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL 123 (144)
T KOG4065|consen 61 AKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVL 123 (144)
T ss_pred hhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHh
Confidence 356655542 245889999999999999999887643 32 1 46788999988764
No 92
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=89.08 E-value=2.1 Score=25.18 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=34.3
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+..+|-++-..++..|+.+++..+|+..|..+....+..+++.+
T Consensus 3 yvaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L 46 (109)
T cd05833 3 YVAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISEL 46 (109)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 34455566666777899999999999999998888877776654
No 93
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=89.07 E-value=1.8 Score=21.70 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
..++.++...|...|.. +.+++..+...+-..+| ++...|...|..
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHHH
Confidence 56889999999999984 57899999999888886 577888887753
No 94
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=89.07 E-value=1.8 Score=21.62 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
..++.++...|...|.. +.+.+..++..+...+| ++..+|...|..
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 46788899999999987 56899999999988887 677888887764
No 95
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.57 E-value=1.3 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
.++++-+|+.+ .|++|.++...|..+|+.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d 30 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHD 30 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHH
Confidence 46799999999 788899999998887764
No 96
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=88.30 E-value=1.7 Score=26.19 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRAL-GFEMTEEHGIVLVCTI 85 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-g~~~~~~ei~~li~~~ 85 (87)
.++|..+|++|-. +.|+.+.+..++... |..+|..+++-+...+
T Consensus 36 ~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 36 LDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 4689999999976 679999999999987 6899999988776654
No 97
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=87.85 E-value=1 Score=18.75 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=12.5
Q ss_pred CCCCCCcccHHHHHHH
Q 048414 50 DTDGSGTIDAKELNVA 65 (87)
Q Consensus 50 D~d~~G~I~~~el~~~ 65 (87)
|.|++|.|+.-|+..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6799999999887643
No 98
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=87.73 E-value=2.1 Score=20.96 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhC-C-CCCCcccHHHHHHHHHH
Q 048414 37 QKKQEIKEAFELFD-T-DGSGTIDAKELNVAMRA 68 (87)
Q Consensus 37 ~~~~~l~~~F~~~D-~-d~~G~I~~~el~~~l~~ 68 (87)
..+..+..+|+.|- + ....+++..||+.+|..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34677899999995 2 34578999999999874
No 99
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.20 E-value=0.93 Score=31.55 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 36 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
.+..+.+..+|..+|.+++|+|+.++|..-+..
T Consensus 73 ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~ 105 (325)
T KOG4223|consen 73 EESQERLGKLVPKIDSDSDGFVTESELKAWIMQ 105 (325)
T ss_pred chhHHHHHHHHhhhcCCCCCceeHHHHHHHHHH
Confidence 345678999999999999999999999975543
No 100
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=86.74 E-value=1.4 Score=30.02 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhCCCCCCcccHHHHHHHH
Q 048414 38 KKQEIKEAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l 66 (87)
....+..+|+..|.|.+|+|++.|++.-+
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwI 127 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWI 127 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHH
Confidence 45678899999999999999999988644
No 101
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=0.63 Score=32.34 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=31.6
Q ss_pred HHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 44 EAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
..|..+|+|++|+++.+||+.-+---+......+.+-|+-+++
T Consensus 245 ~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD 287 (325)
T KOG4223|consen 245 QFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEAD 287 (325)
T ss_pred HHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhc
Confidence 5577789999999999999965543455556667777776654
No 102
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=86.65 E-value=0.75 Score=29.64 Aligned_cols=49 Identities=14% Similarity=0.267 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
...+.++++|..||.++--..+.+++..+|..-|+--....|+.+|..+
T Consensus 52 ~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~NA 100 (188)
T COG2818 52 KKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNA 100 (188)
T ss_pred HhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHHH
Confidence 4456799999999999988999999999999888877777777777654
No 103
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=85.27 E-value=4.7 Score=23.93 Aligned_cols=41 Identities=17% Similarity=0.278 Sum_probs=31.1
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 45 AFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+|-+.--.++-.++.+++..+|...|..+....+..+++.+
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L 46 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 34444445566799999999999999988888887777654
No 104
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=84.99 E-value=1.3 Score=26.13 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=18.9
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHH
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNV 64 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~ 64 (87)
.++..|+..|.|++|.|+..|...
T Consensus 89 C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 89 CARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHcc
Confidence 477789999999999999998764
No 105
>PF13551 HTH_29: Winged helix-turn helix
Probab=83.89 E-value=5.7 Score=22.30 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHH-H-HhCCCCCHHHHHHHHHHH
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAM-R-ALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l-~-~lg~~~~~~ei~~li~~~ 85 (87)
+++++.+.+.+.+.....++.+..+...+...| . ..|..++...|..++..+
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~~ 111 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKRA 111 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHHC
Confidence 899999999999987766644578999999854 3 468899999999998764
No 106
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=83.45 E-value=6.9 Score=22.87 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
|+.+++..+|...|..++...+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 99999999999999999998888887663
No 107
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=83.37 E-value=2.6 Score=27.03 Aligned_cols=36 Identities=31% Similarity=0.212 Sum_probs=24.2
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 50 DTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 50 D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..|.+|++..+||-..+..-+..++.++|.+++..-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 467789999999999998878888999999998753
No 108
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=83.31 E-value=2.8 Score=26.79 Aligned_cols=34 Identities=24% Similarity=0.071 Sum_probs=28.9
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 51 TDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 51 ~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
-|.+|++..++|-..++.-+..++.+++.+++..
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 4778999999999998866667899999998864
No 109
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=83.09 E-value=2.3 Score=31.30 Aligned_cols=35 Identities=17% Similarity=0.510 Sum_probs=28.8
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCCCC
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRAL-GFEMT 74 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-g~~~~ 74 (87)
.+|.+.|+.+|.+++|+|+...-..++..+ |++++
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LP 499 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLP 499 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCc
Confidence 468889999999999999999988888864 44443
No 110
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=82.08 E-value=3.5 Score=31.79 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.......-+..+|...|++++|.++..+...+++.+...+...-+..+++++
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~ 181 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKES 181 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444556678889999999999999999999999998888887777777765
No 111
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=81.32 E-value=2.3 Score=35.83 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=32.3
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 45 AFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.|+.||+|+.|.|+..|+..+|... ...++.+++-++..+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllsca 4101 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCA 4101 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhh
Confidence 5888999999999999999999753 357888887776543
No 112
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=81.28 E-value=1.1 Score=32.77 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
...+.-+|+.+|.+++|.++..||+-+.+.
T Consensus 350 ~~SleYwFrclDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 350 PASLEYWFRCLDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred ccchhhheeeeeccCCCcccHHHHHHHHHH
Confidence 345788899999999999999999976554
No 113
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=81.26 E-value=2.8 Score=23.10 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=26.2
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
...++.....- ...|+|+.+++..+|.. ..++.+.++.++..+.
T Consensus 6 ~~~i~~Li~~g--K~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 6 EEAIKKLIEKG--KKKGYLTYDEINDALPE--DDLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHHHHHHHHHH--HHHSS-BHHHHHHH-S---S---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHH
Confidence 34444444432 24699999999999874 3478888998887653
No 114
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=81.15 E-value=3.5 Score=26.34 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=26.0
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
..+.++|..+++.+.+.++..|+..+++.
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 45888999999998899999999999886
No 115
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=80.86 E-value=2.9 Score=28.51 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHhh-hhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 33 GLSQQKKQEIKEAFE-LFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~-~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
.+.....+.-++-|. .+|.|++|.++.+||...+.-+.+...-.++..++..
T Consensus 273 diddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~ 325 (362)
T KOG4251|consen 273 DIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMAL 325 (362)
T ss_pred chHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhh
Confidence 444444444444554 5699999999999999887666666666666666543
No 116
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=80.72 E-value=5.8 Score=20.75 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=22.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
-.+|.+||...+..|+..++..++-.++..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 3577788888888888778877777766554
No 117
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.56 E-value=1.4 Score=32.74 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=20.5
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
+++|..++...|.|.||.++..||..+|..
T Consensus 264 i~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 264 IEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 455666677777777777777777766543
No 118
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=79.52 E-value=4.5 Score=24.90 Aligned_cols=30 Identities=7% Similarity=0.267 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.+.+|++.+...+.+++|.++++.+++.|.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~ 56 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIG 56 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Confidence 356777777666777778888877777764
No 119
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=79.43 E-value=5.8 Score=23.08 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=26.5
Q ss_pred CCCCcccHH----HHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 52 DGSGTIDAK----ELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 52 d~~G~I~~~----el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.++|.--.+ .+...|...|+++|+++++.+|+.++
T Consensus 63 ~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV 101 (108)
T PF09682_consen 63 GGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAV 101 (108)
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 335655544 45667888899999999999998764
No 120
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=78.93 E-value=5.5 Score=23.44 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 58 DAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 58 ~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
+.+|++.++-.+...++++++++++..+.
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~l~ 108 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDIVK 108 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 47888888888888899999998887653
No 121
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.76 E-value=4.4 Score=24.48 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=22.6
Q ss_pred CCHHHHHHHH-HHhhhhCCCCCCcccHHHHHH
Q 048414 34 LSQQKKQEIK-EAFELFDTDGSGTIDAKELNV 64 (87)
Q Consensus 34 ~~~~~~~~l~-~~F~~~D~d~~G~I~~~el~~ 64 (87)
.++.+++.+. .+.+.-|.|++|+|++.|+-.
T Consensus 110 ~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 110 SSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred CCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 4556665554 457777899999999988754
No 122
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.50 E-value=2.4 Score=27.14 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
...+.++++|.-||.+.=-..+.+++..+|..-|+--....|+.+|..+
T Consensus 50 ~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA 98 (179)
T TIGR00624 50 RKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANA 98 (179)
T ss_pred HhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHH
Confidence 3456799999999998877888999999988777666667777777643
No 123
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.61 E-value=2.2 Score=35.59 Aligned_cols=39 Identities=28% Similarity=0.469 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCC
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGF 71 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~ 71 (87)
.++.++.++++++...||.+..|+|...++..+|+.+.-
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~p 1448 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDP 1448 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCC
Confidence 688999999999999999999999999999999998743
No 124
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=77.50 E-value=11 Score=22.18 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=30.4
Q ss_pred hhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 46 FELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 46 F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+-.|..-+. .|+.+.|..+|...|..+.+..++.++..+
T Consensus 7 ~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaL 45 (109)
T COG2058 7 YLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAAL 45 (109)
T ss_pred HHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHh
Confidence 344443333 899999999999999999998888887655
No 125
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=77.10 E-value=5.1 Score=21.55 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHH
Q 048414 59 AKELNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 59 ~~el~~~l~~lg~~~~~~ei~~li 82 (87)
.+++..+++..|..++..++..++
T Consensus 16 d~~m~~if~l~~~~vs~~el~a~l 39 (68)
T PF07308_consen 16 DDDMIEIFALAGFEVSKAELSAWL 39 (68)
T ss_pred hHHHHHHHHHcCCccCHHHHHHHH
Confidence 334444444444444444444443
No 126
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=77.00 E-value=7.9 Score=24.39 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCCCHHHHHH-HHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 32 HGLSQQKKQE-IKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 32 ~~~~~~~~~~-l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
..++.++..- +.++...-|.||+|+++..|+..++..
T Consensus 140 ~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 140 DELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 4677766654 467788889999999999999987543
No 127
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=76.91 E-value=13 Score=21.90 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=26.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.|+.+++..+|...|..+....+..+++.+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 799999999999999999988888877654
No 128
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=76.69 E-value=2.2 Score=27.54 Aligned_cols=49 Identities=10% Similarity=0.240 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
...+.++++|.-||.+.=-..+.+++..+|..-++--....|+.+|..+
T Consensus 51 ~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA 99 (187)
T PRK10353 51 KKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNA 99 (187)
T ss_pred HHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHH
Confidence 3457799999999998777788899998888777655666777776643
No 129
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=76.46 E-value=12 Score=24.29 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
..++.+++..|..+|. +++||-..|-..+-..|+ +++.+|..+|+.
T Consensus 107 T~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~--LsetQVkvWFQN 152 (197)
T KOG0843|consen 107 TAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLS--LSETQVKVWFQN 152 (197)
T ss_pred cccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcC--CChhHhhhhhhh
Confidence 5789999999999996 678999999888888776 577788777753
No 130
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=76.23 E-value=8.2 Score=20.86 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.-+-+||...|...|+.+++..|-..++++
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL 48 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKEL 48 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHc
Confidence 457789999999999999999998888775
No 131
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=75.44 E-value=16 Score=27.27 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=33.8
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 45 AFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+|..|-..+++.|...-|..+|++.|+.-++-.+.++|+++
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~m 131 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEM 131 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHH
Confidence 36677555679999999999999999988887888887765
No 132
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=75.38 E-value=10 Score=21.44 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=15.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVC 83 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~ 83 (87)
.|+.+||...-+..|..++..+.+.++.
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~ 41 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIAN 41 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3555555555555555555555554443
No 133
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=75.00 E-value=5 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.7
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
..-++-+|++|+.+.||.+...+|..+|..
T Consensus 295 ~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 295 PVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 455788899999999999999888888775
No 134
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=74.95 E-value=7 Score=20.89 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=26.2
Q ss_pred hhhCCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHH
Q 048414 47 ELFDTDGSGTIDAKELNVAMRAL----------GFEMTEEHGIVLVC 83 (87)
Q Consensus 47 ~~~D~d~~G~I~~~el~~~l~~l----------g~~~~~~ei~~li~ 83 (87)
+.||...+.+|+.+++..+.+.- |..++..-+-++|-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~ 56 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIIL 56 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHH
Confidence 46788999999999999988751 45555555555443
No 135
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=74.58 E-value=5.4 Score=23.98 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=22.4
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
.--+--..+.||.+++|.|..-.++.+|-.+
T Consensus 96 ~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 96 DLLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 3346667899999999999999999887654
No 136
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=74.45 E-value=0.99 Score=32.10 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.....|.+.|.-|-.--.=..-..||+--..+| ++++++|+++||+.+.
T Consensus 46 ~~~~~LEdLF~~YGVRy~T~AKIaElGFTvsTL-l~M~deELDdmM~sL~ 94 (386)
T PF01698_consen 46 RELRGLEDLFQGYGVRYYTAAKIAELGFTVSTL-LNMTDEELDDMMNSLS 94 (386)
T ss_dssp --------------------------------------------------
T ss_pred cchhhHHHHHhhccccHHHHHHHHHhcccHHHH-hcccHHHHHHHHHHHH
Confidence 335578888887744211111224444333332 3678999999988664
No 137
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=73.92 E-value=7.7 Score=20.54 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=27.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 53 GSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 53 ~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.++-++...|...|..-|+.+++..|...++.+.
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me 43 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAME 43 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHH
Confidence 3467889999998888898898888888877764
No 138
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=73.57 E-value=4.2 Score=30.38 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=26.2
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
.+..+|..||+.++|.++.+++.+++...
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 46789999999999999999999999875
No 139
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.91 E-value=9.8 Score=18.77 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCccc-HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 54 SGTID-AKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 54 ~G~I~-~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.|.|+ ..++-+.|...|+.+++..++.+++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 47786 445555566679999999988888754
No 140
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=72.71 E-value=4.9 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHH
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l 66 (87)
+.+.-...+.-+|+.+|.|.+|.++..||+.+-
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 444556778889999999999999999998764
No 141
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=72.32 E-value=13 Score=21.53 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=25.0
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
-.|+.+++..+|+..|..+....+..+++.+
T Consensus 16 ~~~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 16 IEITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 4699999999999999988887776665443
No 142
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=70.84 E-value=13 Score=19.25 Aligned_cols=45 Identities=13% Similarity=0.326 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+++..++-|+.+|.... ..+.|...+|-..| +++...+-++++.+
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L-----~vs~~tvt~ml~~L 46 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERL-----GVSPPTVTEMLKRL 46 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHH-----TS-HHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHH-----CCChHHHHHHHHHH
Confidence 45566778889999886 66889999998876 35667777777665
No 143
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=70.72 E-value=2.3 Score=27.24 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 38 KKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..+.++++|.-||.+.=-..+.+++..+|..-+.--....|+.++..+
T Consensus 47 Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA 94 (179)
T PF03352_consen 47 KREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNA 94 (179)
T ss_dssp THHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 456799999999988777788889998888777766777788777654
No 144
>PLN02230 phosphoinositide phospholipase C 4
Probab=70.40 E-value=21 Score=27.10 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGF---EMTEEHGIVLVCTI 85 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~---~~~~~ei~~li~~~ 85 (87)
-.+++.+|..|-.++ +.++.++|..+|..... ..+.+++..+|..+
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~ 76 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEV 76 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 356888999995444 79999999999998642 34667777777654
No 145
>PRK00441 argR arginine repressor; Provisional
Probab=70.20 E-value=12 Score=23.15 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 54 SGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 54 ~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.+..+.+||...|...|+.+++..+..-+.++
T Consensus 16 ~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L 47 (149)
T PRK00441 16 KEIETQEELAEELKKMGFDVTQATVSRDIKEL 47 (149)
T ss_pred cCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHc
Confidence 47889999999999999999999998887764
No 146
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=69.85 E-value=12 Score=18.37 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
.++.+++..|...|..- -+.+..++..+...+| ++...|...|..
T Consensus 6 ~~~~~~~~~L~~~f~~~-----~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (56)
T smart00389 6 SFTPEQLEELEKEFQKN-----PYPSREEREELAAKLG--LSERQVKVWFQN 50 (56)
T ss_pred cCCHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHC--cCHHHHHHhHHH
Confidence 47889999999999732 2889999999988887 567788877754
No 147
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=69.84 E-value=8.1 Score=20.28 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVC 83 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~ 83 (87)
.|+.+|+..+|+...-.++.++|....+
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~ 56 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEE 56 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4888899999988877888888877654
No 148
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=69.69 E-value=3.3 Score=26.08 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=26.8
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.+..+++.+-.++...|+..+|.... .+|..+|.++|+..+..++
T Consensus 86 Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~i 130 (164)
T PF04558_consen 86 QLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKYI 130 (164)
T ss_dssp HHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHHH
Confidence 35556666544444578998888765 3688899999999888765
No 149
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=69.15 E-value=12 Score=18.29 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 60 KELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 60 ~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+|...+|..||+ +..++...+..+
T Consensus 4 ~d~~~AL~~LGy--~~~e~~~av~~~ 27 (47)
T PF07499_consen 4 EDALEALISLGY--SKAEAQKAVSKL 27 (47)
T ss_dssp HHHHHHHHHTTS---HHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHh
Confidence 466667777774 566666666655
No 150
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.15 E-value=14 Score=27.78 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
.+++++.+.+.+-|+.+-.|-.|+|+..--++++..- ++...|+..|++.
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeL 273 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWEL 273 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhh
Confidence 5889999999999999999999999999888888764 4566677777653
No 151
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=68.80 E-value=25 Score=21.82 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhhCCCCCCcccHHHHHHHHH----HhCCCCCH
Q 048414 36 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMR----ALGFEMTE 75 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~----~lg~~~~~ 75 (87)
...+..|..-...+|..+.|++|.++|+.++= .++..++-
T Consensus 65 ~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~ 108 (148)
T PF12486_consen 65 MTQLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPL 108 (148)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCH
Confidence 45677788888888999999999999997543 34544443
No 152
>PLN02952 phosphoinositide phospholipase C
Probab=67.67 E-value=26 Score=26.62 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=34.2
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALG-F-EMTEEHGIVLVCTI 85 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg-~-~~~~~ei~~li~~~ 85 (87)
..++..+|..|-.++ +.++.++|..+|.... . ..+.+++..+|..+
T Consensus 37 r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~ 84 (599)
T PLN02952 37 PDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEV 84 (599)
T ss_pred hHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHH
Confidence 456788888885444 6899999999999863 2 36777788877654
No 153
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.51 E-value=14 Score=22.06 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 58 DAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 58 ~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
+..||+.+|..-+..++.++++.++.-+.
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 56889999998888889999988876543
No 154
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=67.45 E-value=16 Score=19.01 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCc----ccHHHHHHHHHHhCCCCCHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGT----IDAKELNVAMRALGFEMTEEHGI 79 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~----I~~~el~~~l~~lg~~~~~~ei~ 79 (87)
..++.++.+.|...|.. .|+ ++..+...+...+|+ +...+.
T Consensus 6 T~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl--~~~vvK 50 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGV--TRKVFK 50 (58)
T ss_pred CCCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCC--CHHHee
Confidence 57899999999999985 477 888888888888875 444443
No 155
>PHA02554 13 neck protein; Provisional
Probab=67.35 E-value=9.5 Score=26.49 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=24.1
Q ss_pred cHHHHHH-HHHHhCC-----CCCHHHHHHHHHHHhC
Q 048414 58 DAKELNV-AMRALGF-----EMTEEHGIVLVCTIVE 87 (87)
Q Consensus 58 ~~~el~~-~l~~lg~-----~~~~~ei~~li~~~~e 87 (87)
++.||++ +||.||. +++++++.+.|+.++|
T Consensus 7 sp~eLkD~iLRrLGAPii~Ievt~dQi~D~I~rALe 42 (311)
T PHA02554 7 NPRELKDYILRRLGAPIINVEVTEDQIYDCIQRALE 42 (311)
T ss_pred CHHHHHHHHHHhcCCCeeEeecCHHHHHHHHHHHHH
Confidence 5778887 7888885 5689999999988864
No 156
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=67.11 E-value=19 Score=20.13 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.|+.+++..+.+...+.+++++++.+..++
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 377788888877777788888877765544
No 157
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=66.99 E-value=13 Score=19.39 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=13.8
Q ss_pred CcccHHHHHHHHHHh-CCCCCHHHHHHHH
Q 048414 55 GTIDAKELNVAMRAL-GFEMTEEHGIVLV 82 (87)
Q Consensus 55 G~I~~~el~~~l~~l-g~~~~~~ei~~li 82 (87)
..++.+|...++..+ .-.+++.++-.++
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL 41 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFL 41 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 457777777777764 2345666655443
No 158
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=66.99 E-value=19 Score=20.14 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
|+.+++..+.+-..+.+++++++.+..++
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46677777766667778888877665543
No 159
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.91 E-value=8.1 Score=30.40 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVC 83 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~ 83 (87)
.++......+.++|...|.+.+|.|+..+....|...| +....+..++.
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~ 324 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWL 324 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhh
Confidence 67788888999999999999999999999999887754 44445554443
No 160
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=66.72 E-value=7.4 Score=29.15 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 048414 36 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li 82 (87)
+-+++.-+.+|+..|+.++|+|+.-+++.++-..-.++....|+..+
T Consensus 175 ~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nl 221 (694)
T KOG0751|consen 175 EFQLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENL 221 (694)
T ss_pred HHHHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhh
Confidence 33455578899999999999999999999887765555555555443
No 161
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.26 E-value=13 Score=29.37 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCC
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGF 71 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~ 71 (87)
......-+++..|+.+|+..+|+++...-+.+|..-|+
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L 226 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL 226 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhcCC
Confidence 34555667899999999999999999999998876554
No 162
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=66.21 E-value=16 Score=19.03 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=21.5
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVL 81 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~l 81 (87)
..+.+++..+.+..|+.++.+++...
T Consensus 24 ~~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 24 AEDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35588889999999999999998754
No 163
>PRK09462 fur ferric uptake regulator; Provisional
Probab=66.18 E-value=27 Score=21.14 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=27.4
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 52 DGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 52 d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
..++.++.+|+...|+.-+..++...|-..++.+.
T Consensus 29 ~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~ 63 (148)
T PRK09462 29 PDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD 63 (148)
T ss_pred CCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 34568999999999998888888877777666553
No 164
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=66.13 E-value=4 Score=28.86 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=20.3
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
-++.|+..|.|+|.+|+..|++.+|..
T Consensus 372 ~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 372 SRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hhhcchhcccCCCceecHHHHhhhhcc
Confidence 456677778888888888888877753
No 165
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=65.66 E-value=8.9 Score=22.24 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 59 AKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 59 ~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..|++.++..++..+++++++.+++.+
T Consensus 87 ~~El~~ii~~~~~r~~ee~l~~iL~~v 113 (117)
T PF03874_consen 87 AVELRAIIESLESRFSEEDLEEILDLV 113 (117)
T ss_dssp HHHHHHHSTTGTTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 445555555666677788887777665
No 166
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=65.41 E-value=16 Score=22.38 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=27.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 53 GSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 53 ~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.....+.+||...|+..|..++...|-..++++
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~el 45 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLREL 45 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 345678999999999999999999998887764
No 167
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=65.41 E-value=40 Score=23.41 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
..|+.-++.+|.+.|.. .-||+..|=..+-..|| +++.+|..+++.
T Consensus 177 TaFT~~Ql~~LEkrF~~-----QKYLS~~DR~~LA~~Lg--LTdaQVKtWfQN 222 (309)
T KOG0488|consen 177 TAFSDHQLFELEKRFEK-----QKYLSVADRIELAASLG--LTDAQVKTWFQN 222 (309)
T ss_pred hhhhHHHHHHHHHHHHH-----hhcccHHHHHHHHHHcC--CchhhHHHHHhh
Confidence 67999999999999974 46999999888877776 688888887763
No 168
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=64.76 E-value=9.6 Score=27.03 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=29.9
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRAL-GFEMTEEHGI 79 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-g~~~~~~ei~ 79 (87)
-+.+...|..||.+++|.++..+.-..|.-+ |-..+..-|+
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq 299 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQ 299 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHH
Confidence 3679999999999999999998877666544 3344444443
No 169
>PRK03341 arginine repressor; Provisional
Probab=63.31 E-value=17 Score=23.05 Aligned_cols=33 Identities=15% Similarity=0.085 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 53 GSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 53 ~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..+..+-+||...|...|+.+++..|..-++++
T Consensus 26 ~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL 58 (168)
T PRK03341 26 RQSVRSQAELAALLADEGIEVTQATLSRDLDEL 58 (168)
T ss_pred HCCCccHHHHHHHHHHcCCcccHHHHHHHHHHh
Confidence 346788999999999999999999998888765
No 170
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=62.97 E-value=27 Score=26.08 Aligned_cols=52 Identities=23% Similarity=0.524 Sum_probs=37.6
Q ss_pred cCCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 30 RHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 30 ~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
....++.+.++.|+++|+.|-+ |.|+.+||---+.. .++++...+-.++..+
T Consensus 118 ~g~~~~~~~~e~lr~~lh~ykk---g~idgddl~~eia~-~l~~~d~~~~~ild~v 169 (533)
T TIGR00470 118 LGIDIDDEKKERLREVFHLYKK---GAIDGDDLVFEIAK-ALNVSNEMGLKVLETV 169 (533)
T ss_pred hCCCCChhHHHHHHHHHHHhhc---CCCccchhHHHHHH-hhCCchHHHHHHHHHh
Confidence 3357889999999999999955 88999988765443 3455666666666544
No 171
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=62.90 E-value=14 Score=18.09 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q 048414 58 DAKELNVAMRALGFEMTEEHG 78 (87)
Q Consensus 58 ~~~el~~~l~~lg~~~~~~ei 78 (87)
+.+++..+.+..|+.++.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 778888888999999998876
No 172
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=62.72 E-value=28 Score=26.12 Aligned_cols=50 Identities=20% Similarity=0.463 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..++.+.++.|+++|+.|-+ |.|+.+||---+.. .++++...+-.++..+
T Consensus 121 ~~~~~~~~e~l~~~lh~ykk---g~~~gddl~~e~~~-~l~~~~~~~~~~l~~v 170 (529)
T PRK06253 121 RDLSEEKIESLREVLHSYKK---GEIDGDDLVLEISK-ALEVSDEMVLKILDEV 170 (529)
T ss_pred CCCChhHHHHHHHHHHHhhc---CCCccchhHHHHHH-hcCCChHHHHHHHHHh
Confidence 57899999999999999855 88999998765443 3456666666666554
No 173
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=62.62 E-value=24 Score=20.55 Aligned_cols=26 Identities=12% Similarity=0.380 Sum_probs=18.8
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l 66 (87)
-..+.+-|..+-. +|++..+++..|+
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI 54 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI 54 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc
Confidence 4556667777767 7899988888765
No 174
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=62.55 E-value=46 Score=24.79 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCC
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGF 71 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~ 71 (87)
.+++.+...|.-+|+.-|.++==-|+..||+.+|.-++.
T Consensus 121 ~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e 159 (502)
T PF05872_consen 121 ELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSE 159 (502)
T ss_pred ccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHh
Confidence 578888899999999999998888999999999887643
No 175
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=61.65 E-value=18 Score=19.69 Aligned_cols=36 Identities=19% Similarity=0.482 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
.++.+.-++|+.++.+.-.. +.++.+|+..+...||
T Consensus 32 ~f~~~~yedl~diy~~V~~K--~~fS~sEm~aI~~ELG 67 (71)
T PF06569_consen 32 DFSEEKYEDLKDIYEMVMSK--DSFSPSEMQAIAEELG 67 (71)
T ss_pred hCChhhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHH
Confidence 34444444455544444332 3344444444444443
No 176
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=61.14 E-value=19 Score=21.17 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHhhhhCCC--------CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 34 LSQQKKQEIKEAFELFDTD--------GSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d--------~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
-+.+.+.+++...+.++-. +-.--+..+++.++-.++..+++++++.|+..+-
T Consensus 52 ~~~e~i~~~~~~L~~~~L~k~E~~~i~Nl~P~s~~E~~~lI~sl~~r~~ee~l~~iL~~i~ 112 (118)
T smart00657 52 KNREIVRAVRTLLKSKKLHKFEIAQLGNLRPETAEEAQLLIPSLEERIDEEELEELLDDLS 112 (118)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhCCCCCCHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence 3566666666666655421 1233456778888888877788888888887653
No 177
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=61.09 E-value=31 Score=20.13 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.|+.+++..+|...|..+....+..++..+
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L 45 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAAL 45 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 799999999999999888887777776544
No 178
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=60.91 E-value=9.6 Score=29.32 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=29.0
Q ss_pred CCcccHHH-HHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 54 SGTIDAKE-LNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 54 ~G~I~~~e-l~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
||+|+.+| |+.+|-.+|..++..-|..|+..|-
T Consensus 538 DGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik 571 (738)
T KOG2116|consen 538 DGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIK 571 (738)
T ss_pred CCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHH
Confidence 89999887 7889999999999999999887764
No 179
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=60.46 E-value=19 Score=19.64 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=22.7
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
..+.+.|++. |+.-..|....|...=.+++..+.+.+|..++
T Consensus 7 k~I~~~FkL~-----Gl~Lr~eA~~~l~~~l~~~~~~e~e~~l~~Ii 48 (73)
T PF12213_consen 7 KKIVKAFKLR-----GLSLRSEASKYLAEQLQSLSEEEREDWLDKII 48 (73)
T ss_dssp HHHHHHHHHT-----T-EE-HHHHHHHHHHTTTS-TTTHHHHHHHHH
T ss_pred HHHHHHhhhc-----cceecHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4577788875 77766666665554434455555555554443
No 180
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=59.32 E-value=16 Score=16.55 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=15.5
Q ss_pred cccHHHHHHHHHHhCCCCC
Q 048414 56 TIDAKELNVAMRALGFEMT 74 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~ 74 (87)
.++..+|+..++..|...+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 5678899999999988654
No 181
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=58.68 E-value=17 Score=21.37 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=10.5
Q ss_pred hhCCCCCCcccHHHHHHHHH
Q 048414 48 LFDTDGSGTIDAKELNVAMR 67 (87)
Q Consensus 48 ~~D~d~~G~I~~~el~~~l~ 67 (87)
.||...+-+|+.+++..+.+
T Consensus 11 LYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred ccCCCccceeeHHHHHHHHH
Confidence 34555555555555555544
No 182
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=57.78 E-value=24 Score=19.41 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 59 AKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 59 ~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
...|..++..||..-+...|+..|..
T Consensus 5 ~h~l~~LF~QLGL~~~~~~I~~FI~~ 30 (74)
T PF10982_consen 5 QHTLSNLFAQLGLDSSDEAIEAFIET 30 (74)
T ss_dssp -THHHHHHHHHTS---HHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHh
Confidence 34678889999999999999988864
No 183
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=57.70 E-value=8 Score=27.28 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=21.8
Q ss_pred HHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 43 KEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 43 ~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
+..|...|.|++|+++..+|..++..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtk 272 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTK 272 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHH
Confidence 44688889999999999999987653
No 184
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=57.28 E-value=19 Score=16.74 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHhCCCCC
Q 048414 58 DAKELNVAMRALGFEMT 74 (87)
Q Consensus 58 ~~~el~~~l~~lg~~~~ 74 (87)
+.++|+.-|...|+..+
T Consensus 5 s~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 44667777776665443
No 185
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=56.87 E-value=38 Score=19.87 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.|+.+++..+|...|..+....+..++..+
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL 45 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 799999999999999888888777776654
No 186
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=55.57 E-value=26 Score=23.09 Aligned_cols=34 Identities=32% Similarity=0.313 Sum_probs=29.9
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 51 TDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 51 ~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
.|.+|+.+.++|...++.-|..++.+.+..+++.
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~ 87 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVAT 87 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhc
Confidence 5788999999999999999989999988887754
No 187
>PLN02223 phosphoinositide phospholipase C
Probab=55.32 E-value=58 Score=24.56 Aligned_cols=47 Identities=9% Similarity=-0.142 Sum_probs=35.2
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHH---HHh-C-CCCCHHHHHHHHHHHh
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAM---RAL-G-FEMTEEHGIVLVCTIV 86 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l---~~l-g-~~~~~~ei~~li~~~~ 86 (87)
-++++.+|..|- ++.|..+.+.|..+| ... | ...+.++.+.++..+.
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~ 66 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELK 66 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHH
Confidence 346888899884 667899999999988 433 3 3567888888887653
No 188
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=54.92 E-value=22 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 38 KKQEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
...-+..+|..+|.+++|.|+..+|...|..+-
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 344578899999999999999999998887763
No 189
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=54.85 E-value=23 Score=20.45 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=23.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+.++.+++...|+..|..++...|-..++.+
T Consensus 22 ~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 22 EHLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp SSEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 3899999999999988888888777666654
No 190
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=54.59 E-value=17 Score=20.22 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=14.9
Q ss_pred CcccHH-------HHHHHHHHhCCCCCHHHHHHH
Q 048414 55 GTIDAK-------ELNVAMRALGFEMTEEHGIVL 81 (87)
Q Consensus 55 G~I~~~-------el~~~l~~lg~~~~~~ei~~l 81 (87)
|+|+.+ |+-.+|+.||.+++.+|..=+
T Consensus 8 GKls~d~y~~qkvEIL~ALrkLge~Ls~eE~~FL 41 (78)
T PF06384_consen 8 GKLSKDVYTQQKVEILTALRKLGEKLSPEEEAFL 41 (78)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 566654 355689999999998886433
No 191
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=54.10 E-value=71 Score=22.09 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVC 83 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~ 83 (87)
..|+-+++..|+.-|+. +-||+..--..+-..||+ .+.+|.-+|+
T Consensus 251 TAFtaeQL~RLK~EF~e-----nRYlTEqRRQ~La~ELgL--NEsQIKIWFQ 295 (342)
T KOG0493|consen 251 TAFTAEQLQRLKAEFQE-----NRYLTEQRRQELAQELGL--NESQIKIWFQ 295 (342)
T ss_pred ccccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhCc--CHHHhhHHhh
Confidence 57999999999999973 468887777777777775 5567776665
No 192
>PTZ00315 2'-phosphotransferase; Provisional
Probab=53.78 E-value=27 Score=26.47 Aligned_cols=35 Identities=6% Similarity=-0.066 Sum_probs=29.5
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 50 DTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 50 D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
.-|.+|++..++|-..++.-+..++.++|+.+++.
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ 433 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRD 433 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHc
Confidence 35778999999999988876777899999998864
No 193
>PF14164 YqzH: YqzH-like protein
Probab=53.28 E-value=34 Score=18.25 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHHhhhhCCC-CCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHHH
Q 048414 40 QEIKEAFELFDTD-GSGTIDAKELNVAMRALG---FEMTEEHGIVLVCTI 85 (87)
Q Consensus 40 ~~l~~~F~~~D~d-~~G~I~~~el~~~l~~lg---~~~~~~ei~~li~~~ 85 (87)
+.++++|+.|-.| ..-.++..|.+.+.+.+- ..-++.++.+++..+
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~eiVeDv 57 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEPDEDLHEIVEDV 57 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 4578899999776 566788888877666542 123344566666654
No 194
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=53.16 E-value=38 Score=20.06 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=17.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 54 SGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 54 ~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.|.++.+++..-+..-|-.++..++..++..+
T Consensus 26 ~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 26 SGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred cCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 35566666655544445556666665555443
No 195
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=52.98 E-value=49 Score=28.59 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=35.2
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCC-CCHHHHHHHHHHHh
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRAL-GFE-MTEEHGIVLVCTIV 86 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~l-g~~-~~~~ei~~li~~~~ 86 (87)
.++.+....|++.+|+|+..|....|-.- ..+ .+.++|+..++.+.
T Consensus 2297 ~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~ 2344 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALD 2344 (2399)
T ss_pred hHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhh
Confidence 58888899999999999999988877653 222 45667887777654
No 196
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=52.84 E-value=20 Score=20.39 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 60 KELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 60 ~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
+.|+.+|+.-|..++..++..++..+.
T Consensus 12 ~~Lk~lLk~rGi~v~~~~L~~f~~~i~ 38 (90)
T PF02337_consen 12 SILKHLLKERGIRVKKKDLINFLSFID 38 (90)
T ss_dssp HHHHHHHHCCT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCeeecHHHHHHHHHHHH
Confidence 345556666666666666666665543
No 197
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=52.80 E-value=33 Score=17.88 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=8.3
Q ss_pred CcccHHHHHHHHHHh
Q 048414 55 GTIDAKELNVAMRAL 69 (87)
Q Consensus 55 G~I~~~el~~~l~~l 69 (87)
..++.++|+.+|..+
T Consensus 31 ~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 31 YDISLEELQEFLDRL 45 (60)
T ss_dssp TT--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 457777777776653
No 198
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=52.59 E-value=29 Score=25.64 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=28.2
Q ss_pred HHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 44 EAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
..|..++.+..|.|++..+...-.. |..++...+.+++..++
T Consensus 143 ~~f~k~~~d~~g~it~~~Fi~~~~~-~~~l~~t~~~~~v~~l~ 184 (493)
T KOG2562|consen 143 STFRKIDGDDTGHITRDKFINYWMR-GLMLTHTRLEQFVNLLI 184 (493)
T ss_pred hhhhhhccCcCCceeHHHHHHHHHh-hhhHHHHHHHHHHHHHh
Confidence 4688899999999999888765433 33345555555555443
No 199
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=51.87 E-value=46 Score=22.19 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=30.7
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 51 TDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 51 ~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
-+++|.+....|..-|..+--+++..|+..+-+-+
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 57889999999999999999999999998876543
No 200
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=51.82 E-value=23 Score=18.47 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=14.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 54 SGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 54 ~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
+..++..++...|...|..++...|...+.+
T Consensus 11 ~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~ 41 (72)
T PF01498_consen 11 NPRISAREIAQELQEAGISVSKSTIRRRLRE 41 (72)
T ss_dssp -----HHHHHHHT---T--S-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCcCHHHHHHHHHH
Confidence 3457777777766655777777777776654
No 201
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=51.63 E-value=27 Score=26.26 Aligned_cols=44 Identities=7% Similarity=0.231 Sum_probs=36.2
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+++.-...+.-+.|.++.+|...+|..+++.-...+++++|+++
T Consensus 457 ~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~ 500 (548)
T PF02459_consen 457 SRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQA 500 (548)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHh
Confidence 44555566788888999999999999999888888899888875
No 202
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=51.62 E-value=49 Score=24.50 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHhhhhC--------CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 33 GLSQQKKQEIKEAFELFD--------TDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D--------~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.+++.+.+.+++.|..+. ...--.|+.++++.+-+-....++++|++.+.+++
T Consensus 357 ~~~e~~~~~~~~~~s~l~s~~m~~~~~~~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 357 ELSETQTKGIKKSFSDLQSPLFPKHWTSKKQQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred HHHHHhhhhhhhhhhhhcChhhhhhhccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 345555556666666543 11224699999999888778889999998887665
No 203
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=51.30 E-value=35 Score=17.72 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=14.7
Q ss_pred cccHHHHHHHHHHhCCCCC
Q 048414 56 TIDAKELNVAMRALGFEMT 74 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~ 74 (87)
.|+.+++..+|..||+...
T Consensus 18 ~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 18 DLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred CCCHHHHHHHHHHCCCeEE
Confidence 4788888888888887653
No 204
>PRK04280 arginine repressor; Provisional
Probab=50.55 E-value=29 Score=21.42 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
=+-+||...|+..|+..|+..|-.-|+++
T Consensus 19 ~tQeeL~~~L~~~Gi~vTQATiSRDikeL 47 (148)
T PRK04280 19 ETQDELVDRLREEGFNVTQATVSRDIKEL 47 (148)
T ss_pred CCHHHHHHHHHHcCCCeehHHHHHHHHHc
Confidence 35688999999999999999988777764
No 205
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=49.70 E-value=45 Score=18.54 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 58 DAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 58 ~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+..||-..+..-...++..++..+++.+
T Consensus 2 tk~eli~~ia~~~~~~s~~~~~~vv~~~ 29 (94)
T PRK00199 2 TKSELIERLAARNPHLSAKDVENAVKEI 29 (94)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3455555554432335555555555444
No 206
>TIGR01673 holin_LLH phage holin, LL-H family. This model represents a putative phage holin from a number of phage and prophage regions of Gram-positive bacteria. Like other holins, it is small (about 100 amino acids) with stretches of hydrophobic sequence and is encoded adjacent to lytic enzymes.
Probab=49.47 E-value=53 Score=19.27 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=27.8
Q ss_pred hhhhCCCCCCcccHH----HHHHHHHHhCC-CCCHHHHHHHHHHHh
Q 048414 46 FELFDTDGSGTIDAK----ELNVAMRALGF-EMTEEHGIVLVCTIV 86 (87)
Q Consensus 46 F~~~D~d~~G~I~~~----el~~~l~~lg~-~~~~~ei~~li~~~~ 86 (87)
....+..++|..-.+ -+...|...|+ ++++.+++.+|+.++
T Consensus 56 eq~~~~~~~G~~K~~~A~~~v~~~L~~~~i~~~t~~~i~~~IE~aV 101 (108)
T TIGR01673 56 QQNFNESGGGAEKLEQAFNYITEELKKAHIPKPSDAQIEGAIEAAV 101 (108)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 444444445554433 35567888899 899999999988764
No 207
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=48.92 E-value=51 Score=18.99 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li 82 (87)
..++.+..+.+..+...+=...+|.+...+++.+...+| ++..++..++
T Consensus 40 ~~~~~e~~~~~~~~i~~~~~~~~~~~~~~~i~~~r~~~g--ltq~~lA~~l 88 (127)
T TIGR03830 40 ELLDPEESKRNSAALADFYRKVDGLLTPPEIRRIRKKLG--LSQREAAELL 88 (127)
T ss_pred EEEcHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 345666666666665555567778899999988777665 4665655443
No 208
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=48.30 E-value=61 Score=19.87 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=26.6
Q ss_pred HHHHHhhhhCCC-------CCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHH
Q 048414 41 EIKEAFELFDTD-------GSGTIDAKELNVAMRA-LGFEMTEEHGIVLVCT 84 (87)
Q Consensus 41 ~l~~~F~~~D~d-------~~G~I~~~el~~~l~~-lg~~~~~~ei~~li~~ 84 (87)
+++++...|..+ ..+.|+.+-++.+|+. +...++.+-+..|+-.
T Consensus 26 klkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~s 77 (138)
T PF14513_consen 26 KLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLS 77 (138)
T ss_dssp -HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555555333 2468999999999997 5777887777777653
No 209
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=48.19 E-value=48 Score=18.38 Aligned_cols=28 Identities=14% Similarity=-0.003 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 58 DAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 58 ~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+..||...+..-...++..++..+++.+
T Consensus 2 ~k~eli~~i~~~~~~~s~~~v~~vv~~~ 29 (94)
T TIGR00988 2 TKSELIERIATQQSHLPAKDVEDAVKTM 29 (94)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3445555444332334555555554443
No 210
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=48.12 E-value=1.2e+02 Score=23.65 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=46.2
Q ss_pred ccchhhhccCCccCCCCCccccccccCCCCCHHHHHHHHHHhhhhCCCCCCcc--cHHHHHHHHHHhCCCCCHHHHHHHH
Q 048414 5 SLESVCLFKRASLYKGVSRKDKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTI--DAKELNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 5 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I--~~~el~~~l~~lg~~~~~~ei~~li 82 (87)
|.+-...+|+.+...-....+| ..++.++++++.-.. ..+.+..|.- ..+++..+-+-.-+.++++|++.+.
T Consensus 564 sirdviaFPK~~~g~dlm~~aP-----s~v~~~qL~el~i~~-~~~~~~~~~~~~~~~~V~~iA~LARL~l~eeE~~~~~ 637 (706)
T PRK12820 564 SIREVIAFPKNRSAACPLTGAP-----SEVAQEQLAELGLLD-LGDADQLPGDAEKEDLIDHLSWVSRIGFAEAERAAIE 637 (706)
T ss_pred cHHHhcccCCCCCCCCcccCCC-----CcCCHHHHHHhCchh-hcccccccccccchHHHHHHHHHhCcCCCHHHHHHHH
Confidence 4445667777666666666555 456777777764444 5555554443 3455665544445678998888776
Q ss_pred HHH
Q 048414 83 CTI 85 (87)
Q Consensus 83 ~~~ 85 (87)
.++
T Consensus 638 ~~L 640 (706)
T PRK12820 638 SAL 640 (706)
T ss_pred HHH
Confidence 654
No 211
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=47.94 E-value=70 Score=20.24 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=34.1
Q ss_pred ccCCCCCHHHHHHHHHHhhhhCCCC-------------CCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 048414 29 GRHHGLSQQKKQEIKEAFELFDTDG-------------SGTIDAKELNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 29 ~~~~~~~~~~~~~l~~~F~~~D~d~-------------~G~I~~~el~~~l~~lg~~~~~~ei~~li 82 (87)
.....++++..+++.++...|+.+. -|+|+.+-+..+-+.+|. +..+|..++
T Consensus 11 ~~~~~~~~~~~~~i~~ii~~~~~~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l~v--~~a~V~gVa 75 (169)
T PRK07571 11 SATHPSGDKRFKVLEATMKRNQYRQDALIEVLHKAQELFGYLERDLLLYVARQLKL--PLSRVYGVA 75 (169)
T ss_pred CccCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCc--CHHHHHHHH
Confidence 3446778888888888888886433 477777777777666664 344554443
No 212
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=47.93 E-value=20 Score=26.44 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=25.7
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
.+.++.+-+.+|-|++|.|+.+|--.+|+.
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 467899999999999999999887777764
No 213
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=47.89 E-value=51 Score=18.69 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=26.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 54 SGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 54 ~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
++.++.+|+...|+.-+..++...|-..++.+.
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~ 46 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLE 46 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 578999999999988777788877777666554
No 214
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=47.55 E-value=29 Score=23.08 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=25.7
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 68 (87)
.-.++.+.+..|.|.+|+|+..++--+++.
T Consensus 134 HL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 134 HLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred hHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 346888999999999999999998877775
No 215
>PRK05066 arginine repressor; Provisional
Probab=47.35 E-value=41 Score=20.98 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=25.1
Q ss_pred cccHHHHHHHHHHhCCC-CCHHHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFE-MTEEHGIVLVCTI 85 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~-~~~~ei~~li~~~ 85 (87)
.=+-+||...|...|+. .|+..+-.-|+++
T Consensus 23 I~tQeeL~~~L~~~Gi~~vTQATiSRDikeL 53 (156)
T PRK05066 23 FGSQGEIVTALQEQGFDNINQSKVSRMLTKF 53 (156)
T ss_pred CCCHHHHHHHHHHCCCCeecHHHHHHHHHHc
Confidence 34568899999999999 8999998877765
No 216
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=47.09 E-value=26 Score=24.69 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=28.6
Q ss_pred HhhhhC---CCCCCcccHHHHHHHHHHhCCCCC----------HHHHHHHHHHHh
Q 048414 45 AFELFD---TDGSGTIDAKELNVAMRALGFEMT----------EEHGIVLVCTIV 86 (87)
Q Consensus 45 ~F~~~D---~d~~G~I~~~el~~~l~~lg~~~~----------~~ei~~li~~~~ 86 (87)
.|-.|| .++.+..+..+.+.+|..+|.+.. .+++.++++.+.
T Consensus 127 ~F~vFDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~ 181 (342)
T cd07894 127 GFFVFDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELD 181 (342)
T ss_pred EEEEEeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHH
Confidence 355555 455677889999999999876432 256777776654
No 217
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=47.03 E-value=26 Score=20.90 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=24.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 53 GSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 53 ~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
+-|.--.++|+.-++.+|+.++..+|-..+.+++
T Consensus 32 ~Yg~q~Ld~lr~EFk~~Gy~P~hsEvYraLHeL~ 65 (122)
T PF02334_consen 32 GYGLQLLDELRSEFKPLGYRPNHSEVYRALHELV 65 (122)
T ss_dssp EBCTCHHHHHHHHHTTTT----HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 4577889999999999999999999877776664
No 218
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=46.85 E-value=33 Score=17.40 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=27.7
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
+.|..+|. .|.|+..|+..=+.....--+..++..++..
T Consensus 13 ~~L~~a~a------~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~D 51 (53)
T PF08044_consen 13 DLLRAAFA------EGRLSLDEFDERLDAAYAARTRGELDALFAD 51 (53)
T ss_pred HHHHHHHH------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHcc
Confidence 44566664 5999999999876665555677778777654
No 219
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=46.17 E-value=58 Score=18.78 Aligned_cols=30 Identities=7% Similarity=0.133 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
|...+..-+|.-|...++++||.++...++
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~ 49 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELA 49 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHH
Confidence 666666667766777777777777776653
No 220
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.83 E-value=62 Score=20.20 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=25.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 54 SGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 54 ~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.+.++.++|-..|+..+.+++...|-..+..+.
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~ 71 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLL 71 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHH
Confidence 478999999999999888777777766665543
No 221
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=45.71 E-value=57 Score=18.61 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.|+.+++..+.+.--+.+++++++.+..++
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 467777777766656677777777665543
No 222
>PLN02859 glutamine-tRNA ligase
Probab=45.61 E-value=32 Score=27.09 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=34.4
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
..+..+|+.+-..+...++..+|.... .+|..+|.++|+..+..++
T Consensus 87 ~Ql~AA~kYl~~~~~~~~d~~~Fek~C-GVGV~VT~EqI~~~V~~~i 132 (788)
T PLN02859 87 AQLEAAFSFFSSTGPESFDLNKFEEAC-GVGVVVSPEDIEAAVNEVF 132 (788)
T ss_pred HHHHHHHHHHHhCCCCccCHHHHHHhC-CCCEEECHHHHHHHHHHHH
Confidence 356777887755555578888887654 3678899999999988775
No 223
>PLN02222 phosphoinositide phospholipase C 2
Probab=45.60 E-value=93 Score=23.74 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=31.7
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHH
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRALG-F-EMTEEHGIVLVCT 84 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~lg-~-~~~~~ei~~li~~ 84 (87)
++..+|..|-. ++.++.++|..+|.... . ..+.+.+..+|+.
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~ 69 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINS 69 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHh
Confidence 57778888753 47999999999999863 3 3567777877764
No 224
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=44.83 E-value=44 Score=20.30 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 60 KELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 60 ~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
+.+..+|..||+ ++..+|+.|-..|+
T Consensus 94 ~rV~~aL~rLgv-Ps~~dv~~L~~rId 119 (132)
T PF05597_consen 94 ERVARALNRLGV-PSRKDVEALSARID 119 (132)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 347788999997 67888888866654
No 225
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=44.30 E-value=81 Score=19.91 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=26.8
Q ss_pred CCCCCCcccHHHHHHHHHH-hC-----------CCCCHHHHHHHHHHHhC
Q 048414 50 DTDGSGTIDAKELNVAMRA-LG-----------FEMTEEHGIVLVCTIVE 87 (87)
Q Consensus 50 D~d~~G~I~~~el~~~l~~-lg-----------~~~~~~ei~~li~~~~e 87 (87)
|.+.+|.|+...|-.+|.. +| -.++.+++..++..++|
T Consensus 93 ~~~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~ 142 (175)
T PF04876_consen 93 DDSTNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIE 142 (175)
T ss_pred cCCcccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 3345788998888777663 33 25778888888887764
No 226
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=43.62 E-value=26 Score=16.34 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=10.4
Q ss_pred cccHHHHHHHHHHhCCCC
Q 048414 56 TIDAKELNVAMRALGFEM 73 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~ 73 (87)
+++..+|+.+|...|..+
T Consensus 3 sltV~~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEF 20 (35)
T ss_dssp T--SHHHHHHHHHHT---
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 456778888888887654
No 227
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=43.47 E-value=16 Score=22.88 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=21.6
Q ss_pred CCcccHHH-HHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 54 SGTIDAKE-LNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 54 ~G~I~~~e-l~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
||+|+.+| ++.++..+|...+..-+-+++..+
T Consensus 7 DGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i 39 (157)
T PF08235_consen 7 DGTITKSDVLGHILPILGKDWTHPGAAELYRKI 39 (157)
T ss_pred cCCcCccchhhhhhhccCchhhhhcHHHHHHHH
Confidence 58899888 556666678776666666665543
No 228
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=42.94 E-value=47 Score=18.63 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=16.1
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei~~li 82 (87)
|+.+...|-.-|..+| +|.+++.+.+
T Consensus 61 Gy~N~KqllkrLN~f~--it~~e~~~al 86 (87)
T PF13331_consen 61 GYGNAKQLLKRLNMFG--ITREEFEEAL 86 (87)
T ss_pred CCCCHHHHHHHHHHcC--CCHHHHHHHh
Confidence 6666666666666554 5666666654
No 229
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=42.53 E-value=59 Score=18.23 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=24.9
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
+.+..+++.-.....| |..+++..-| .++..+|+..++.+.
T Consensus 50 ~~Vl~~i~~~~~~~~G-v~v~~I~~~l-----~~~~~~v~~al~~L~ 90 (102)
T PF08784_consen 50 DKVLNFIKQQPNSEEG-VHVDEIAQQL-----GMSENEVRKALDFLS 90 (102)
T ss_dssp HHHHHHHHC----TTT-EEHHHHHHHS-----TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCc-ccHHHHHHHh-----CcCHHHHHHHHHHHH
Confidence 4455555553334455 8888888655 568889998888764
No 230
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=41.33 E-value=32 Score=24.64 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=23.0
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHHhCCCC
Q 048414 45 AFELFDTDGSGTIDAKELNVAMRALGFEM 73 (87)
Q Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~lg~~~ 73 (87)
+|..+|.+....++.++-..++..+|+..
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~yglp~ 190 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKYGLPH 190 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHCCCCc
Confidence 46666667788999999999999888754
No 231
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=41.04 E-value=55 Score=17.04 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=7.6
Q ss_pred cccHHHHHHHHHHhCC
Q 048414 56 TIDAKELNVAMRALGF 71 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~ 71 (87)
.++...|+..+..-|.
T Consensus 44 ~~~~~~l~~~lD~~gI 59 (64)
T PF09494_consen 44 KVDPSKLKEWLDSQGI 59 (64)
T ss_pred eeCHHHHHHHHHHCCc
Confidence 4445555554444443
No 232
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=40.84 E-value=35 Score=15.38 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=12.3
Q ss_pred CCcccHHHHHHHHHHh
Q 048414 54 SGTIDAKELNVAMRAL 69 (87)
Q Consensus 54 ~G~I~~~el~~~l~~l 69 (87)
.|.|+.+++.+++...
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5788998888877653
No 233
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=40.47 E-value=16 Score=24.24 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=23.5
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l 66 (87)
+..+...|...|.|++|+|..+|-..+|
T Consensus 221 e~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 221 EHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred HhhchhhhhcccCCCCCceeHHHhhccc
Confidence 3456778999999999999999988765
No 234
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=39.43 E-value=80 Score=18.51 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Q 048414 36 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIVE 87 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~e 87 (87)
.++.+++++++.. ++.+++..=|.+ ++++|++.+.+++.|
T Consensus 65 ~~Q~k~Ye~a~~~--------~~~~~lqkRle~----l~~eE~~~L~~eiee 104 (104)
T PF11460_consen 65 MQQRKDYEEAVDQ--------LTNEELQKRLEE----LSPEELEALQAEIEE 104 (104)
T ss_pred HHHHHHHHHHHHH--------HhHHHHHHHHHh----CCHHHHHHHHHHhcC
Confidence 4566677777753 445567766654 688999999988764
No 235
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=39.39 E-value=35 Score=22.14 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=19.4
Q ss_pred hhhhCCCCCCcccHHHHHHHHHHh
Q 048414 46 FELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 46 F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
..-||.|++|.++.+|+..+.+.+
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHH
Confidence 336799999999999999876643
No 236
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=38.50 E-value=60 Score=17.49 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh---------CCCCCHHHHHHHHH
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL---------GFEMTEEHGIVLVC 83 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l---------g~~~~~~ei~~li~ 83 (87)
.+.++....-..|... -..|++..+|+..++..+ +..++..+++++++
T Consensus 10 ~s~e~~~~~~~ql~Q~--~~~Gkv~~ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~~~ 66 (75)
T TIGR02675 10 ASAEEADGALIQLSQM--LASGKLRGEEINSLLEALPGALQALAKAMGVTRGELRKMLS 66 (75)
T ss_pred CCHHHHHHHHHHHHHH--HHcCcccHHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3444444444444433 245889999988877542 22355666666554
No 237
>COG1438 ArgR Arginine repressor [Transcription]
Probab=38.39 E-value=47 Score=20.72 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=26.1
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..=+-+||...|..-|+.+++..+-..|+++
T Consensus 19 ~i~TQ~Elv~~L~~~Gi~vTQaTvSRDlkel 49 (150)
T COG1438 19 KISTQEELVELLQEEGIEVTQATVSRDLKEL 49 (150)
T ss_pred CCCCHHHHHHHHHHcCCeEehHHHHHHHHHc
Confidence 3456789999999999999999998888775
No 238
>PHA02142 putative RNA ligase
Probab=38.33 E-value=23 Score=25.26 Aligned_cols=29 Identities=28% Similarity=0.380 Sum_probs=23.4
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHHhCCCC
Q 048414 45 AFELFDTDGSGTIDAKELNVAMRALGFEM 73 (87)
Q Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~lg~~~ 73 (87)
+|+.++.+..++++.++...++..+|+..
T Consensus 274 vF~v~~i~~~~yl~~~e~~~~~~~~gl~~ 302 (366)
T PHA02142 274 AFRAWFIDEQRFATDEEFQDLCRTLGMEI 302 (366)
T ss_pred EEEEEEeccceeCCHHHHHHHHHHcCCce
Confidence 45555667888999999999999998753
No 239
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=37.94 E-value=80 Score=18.07 Aligned_cols=29 Identities=7% Similarity=-0.081 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
-+...|..+|+.++.+...+.|..+++.-
T Consensus 67 a~~~~Li~aLr~~~l~~~Ad~I~~~l~~~ 95 (97)
T cd08316 67 GAYRTLIKTLRKAKLCTKADKIQDIIEAD 95 (97)
T ss_pred chHHHHHHHHHHccchhHHHHHHHHHHhc
Confidence 34688889999999998888888887653
No 240
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=37.30 E-value=66 Score=16.88 Aligned_cols=18 Identities=28% Similarity=0.600 Sum_probs=9.3
Q ss_pred cccHHHHHHHHHHhCCCC
Q 048414 56 TIDAKELNVAMRALGFEM 73 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~ 73 (87)
.++.+++..+|+.||+.+
T Consensus 18 ~i~~~~i~~~L~~lg~~~ 35 (70)
T PF03484_consen 18 DISPEEIIKILKRLGFKV 35 (70)
T ss_dssp ---HHHHHHHHHHTT-EE
T ss_pred CCCHHHHHHHHHHCCCEE
Confidence 466667777777776543
No 241
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=37.27 E-value=32 Score=20.38 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=14.7
Q ss_pred CCCCcccHHHHHHHHHHh
Q 048414 52 DGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 52 d~~G~I~~~el~~~l~~l 69 (87)
|-+|+|+.++|+.+|..+
T Consensus 6 DtSGSis~~~l~~fl~ev 23 (126)
T PF09967_consen 6 DTSGSISDEELRRFLSEV 23 (126)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 668999999999888653
No 242
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=37.14 E-value=85 Score=20.33 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=23.9
Q ss_pred hhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 46 FELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 46 F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
-..|.+|+.|.|+...+-.+.+ + .+..+...+.++.|
T Consensus 125 ~~af~~dk~G~l~~~rIl~Lrr-l--~i~D~~w~~am~aI 161 (195)
T PF11363_consen 125 NRAFQVDKEGNLNTSRILGLRR-L--EIDDERWQEAMDAI 161 (195)
T ss_pred HHHHhcCCCCCcCHHHHHHHHh-c--cCCCHHHHHHHHHH
Confidence 4566789999999988776543 3 34455555544443
No 243
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=36.97 E-value=16 Score=19.42 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHH-hCCCCCHHHHHHHHH
Q 048414 57 IDAKELNVAMRA-LGFEMTEEHGIVLVC 83 (87)
Q Consensus 57 I~~~el~~~l~~-lg~~~~~~ei~~li~ 83 (87)
++..++..++.. .|..++..++..+.+
T Consensus 14 ~~~~~l~~~~~~~~g~~l~~~~l~~~~~ 41 (76)
T PF08479_consen 14 LPEEELQAILAPYIGRCLTLADLQQLAD 41 (76)
T ss_dssp SSCCHHHHHHGGGTTSBB-HHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCcCHHHHHHHHH
Confidence 344444444443 244444444444443
No 244
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=36.93 E-value=1.1e+02 Score=19.13 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=32.3
Q ss_pred HHHHHHhhhh-CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 40 QEIKEAFELF-DTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 40 ~~l~~~F~~~-D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+-+.-.|..| |.+.+-..+.++|..-|...|+ ..++|.+.+.-+
T Consensus 3 dVL~yLfE~y~~~~~~~~~d~~~L~~~L~~aGF--~~~eI~~Al~WL 47 (155)
T PF04361_consen 3 DVLMYLFENYIDFESDACPDQDDLTRELSAAGF--EDEEINKALDWL 47 (155)
T ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 3455667776 4556778899999999999986 677887766543
No 245
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=36.90 E-value=51 Score=15.45 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCC
Q 048414 36 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE 72 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~ 72 (87)
++.+..++.+|- .++.+.++.+|...+.+
T Consensus 2 ~~~v~~L~~mFP--------~~~~~~I~~~L~~~~~~ 30 (42)
T PF02845_consen 2 EEMVQQLQEMFP--------DLDREVIEAVLQANNGD 30 (42)
T ss_dssp HHHHHHHHHHSS--------SS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCC--------CCCHHHHHHHHHHcCCC
Confidence 456778888884 57788899999776543
No 246
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=36.49 E-value=56 Score=20.06 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHH
Q 048414 62 LNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 62 l~~~l~~lg~~~~~~ei~~li 82 (87)
|..-++.+|+.++++|+.+++
T Consensus 95 l~~e~eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 95 LEQEFEKLGITVSDDELQDML 115 (145)
T ss_pred HHHHHHHhCCccCHHHHHHHH
Confidence 334566789999999999988
No 247
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=36.37 E-value=1e+02 Score=18.87 Aligned_cols=45 Identities=7% Similarity=0.208 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 35 SQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 35 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
..++++.+.++...+..+.....+..++...+ .++...|..+|++
T Consensus 25 ~~~~e~~f~kV~~yLr~~p~~~ati~eV~e~t-----gVs~~~I~~~Ire 69 (137)
T TIGR03826 25 YEEEEREFEKVYKFLRKHENRQATVSEIVEET-----GVSEKLILKFIRE 69 (137)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH-----CcCHHHHHHHHHc
Confidence 35667788888888886666667777777654 3567777777754
No 248
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=36.29 E-value=80 Score=20.77 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhhh
Q 048414 36 QQKKQEIKEAFELF 49 (87)
Q Consensus 36 ~~~~~~l~~~F~~~ 49 (87)
..+.+.|.++|+.+
T Consensus 29 ~~D~~~l~~~f~~l 42 (241)
T smart00115 29 DVDAENLTELFQSL 42 (241)
T ss_pred HHHHHHHHHHHHHC
Confidence 33445555555544
No 249
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=36.27 E-value=49 Score=17.74 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=27.0
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li 82 (87)
+..+|..|=....+.|...+|..+|..+|+ ++.-++.-+
T Consensus 6 i~tl~Gdy~~~~g~~i~~~~Li~ll~~~Gv--~e~avR~al 44 (70)
T PF07848_consen 6 IVTLLGDYLRPRGGWIWVASLIRLLAAFGV--SESAVRTAL 44 (70)
T ss_dssp HHHHHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHH
T ss_pred hHHHHHHHhccCCCceeHHHHHHHHHHcCC--ChHHHHHHH
Confidence 456676677778899999999999998884 555554443
No 250
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=36.26 E-value=86 Score=19.11 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=15.4
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
|.++.++|...+.... .++..++..+|..+
T Consensus 29 ~~mt~~el~~~Ia~~s-~~s~~dv~~vl~~l 58 (145)
T TIGR01201 29 GVIDFEEIAELIAEES-SLSPGDVKGIIDRL 58 (145)
T ss_pred CCcCHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 4566666655554432 34555555555444
No 251
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.93 E-value=68 Score=19.81 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVC 83 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~ 83 (87)
+..++-+|.. -..|+..+|...++.++..|+..++.
T Consensus 90 LkKLRiAf~l---------K~~Dm~~I~~~~~f~vS~pElsAlfR 125 (155)
T COG4807 90 LKKLRIAFSL---------KTDDMLAILTEQQFRVSMPELSALFR 125 (155)
T ss_pred HHhHhHhhhc---------ccchHHHHHhccCcccccHHHHHHHh
Confidence 5677878763 33456677777777777777766654
No 252
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=35.89 E-value=63 Score=20.46 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.3
Q ss_pred CCCCcccHHHHHHHHHHhC
Q 048414 52 DGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 52 d~~G~I~~~el~~~l~~lg 70 (87)
..-+.|+.++++.+|..|+
T Consensus 69 ~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 69 KKARTITFEEFKKALEELA 87 (180)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 3446899999999999886
No 253
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=35.83 E-value=75 Score=17.10 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
..++.+....+...|..|- .+.|+.++|-..|+.+
T Consensus 20 ~~l~~~~~~~l~~~Y~~~k---~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 20 KHLPPSKMDLLQKHYEEFK---KKKISREEFVRKLRQI 54 (70)
T ss_pred HHCCHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHH
Confidence 4567777777777777664 4789999999999875
No 254
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=35.25 E-value=72 Score=16.71 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
+..+.++...+-......-+.+|+-..| .++.+++..++..
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~l-----gis~~~v~~~l~~ 43 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEEL-----GISVEEVRELLQA 43 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHH-----TS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHH-----cccHHHHHHHHHh
Confidence 3444555544444333445666666554 3566666666654
No 255
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=35.23 E-value=80 Score=18.62 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 59 AKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 59 ~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.+.+..+|..+|+ ++.++|+.|-..|
T Consensus 80 ~~~v~~~L~~lg~-~tk~ev~~L~~RI 105 (118)
T TIGR01837 80 DERVEQALNRLNI-PSREEIEALSAKI 105 (118)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 3457788888886 6778887775554
No 256
>PLN02228 Phosphoinositide phospholipase C
Probab=34.71 E-value=1.8e+02 Score=22.14 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHH
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRALG-F-EMTEEHGIVLVCT 84 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg-~-~~~~~ei~~li~~ 84 (87)
.++..+|..+-.+ +.++.++|..+|.... . ..+.+.+..+|..
T Consensus 24 ~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~ 68 (567)
T PLN02228 24 VSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHS 68 (567)
T ss_pred HHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHH
Confidence 4577777777533 5899999999998763 2 2455667777664
No 257
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]
Probab=34.53 E-value=98 Score=20.79 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=21.5
Q ss_pred CCCcccHHHHHH-HHHHhCCC---CCHHHHHHHHHH
Q 048414 53 GSGTIDAKELNV-AMRALGFE---MTEEHGIVLVCT 84 (87)
Q Consensus 53 ~~G~I~~~el~~-~l~~lg~~---~~~~ei~~li~~ 84 (87)
+.|.|+.+||++ ++..-+.. ++.+++...|+.
T Consensus 113 nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~k 148 (249)
T KOG3341|consen 113 NGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDK 148 (249)
T ss_pred cCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHH
Confidence 447999999998 44444443 677776665554
No 258
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=34.22 E-value=73 Score=17.94 Aligned_cols=12 Identities=33% Similarity=0.374 Sum_probs=5.7
Q ss_pred CCcccHHHHHHH
Q 048414 54 SGTIDAKELNVA 65 (87)
Q Consensus 54 ~G~I~~~el~~~ 65 (87)
||.|+.+|-..+
T Consensus 13 DG~id~~E~~~I 24 (95)
T cd07178 13 DGHIDEAERARI 24 (95)
T ss_pred cCCCCHHHHHHH
Confidence 455555554433
No 259
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=34.21 E-value=67 Score=24.46 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=23.6
Q ss_pred CCCcccHHHHHHHHHHh---------------CC-CCCHHHHHHHHHHHh
Q 048414 53 GSGTIDAKELNVAMRAL---------------GF-EMTEEHGIVLVCTIV 86 (87)
Q Consensus 53 ~~G~I~~~el~~~l~~l---------------g~-~~~~~ei~~li~~~~ 86 (87)
.+|.|..+.+..+|..+ |+ .++.++|+.+|.+++
T Consensus 533 ~~g~iake~iee~l~~l~~~p~~~~~e~~~~~gL~~ls~eEve~iI~eii 582 (631)
T COG2511 533 SEGKIAKEAIEEILKALAENPGKDAAEIAEKLGLKELSEEEVEKIIDEII 582 (631)
T ss_pred hcccchHHHHHHHHHHHHhCCCCCHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 35778877766665544 32 467888888888876
No 260
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=34.08 E-value=92 Score=22.10 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
..++.++++. +.+.+|.- =-|+.+||..+|+..
T Consensus 201 vgfs~~Dld~---aL~~~~E~--lDIdrddLe~llr~~ 233 (382)
T COG3448 201 VGFSSEDLDA---ALQRLGET--LDIDRDDLERLLRET 233 (382)
T ss_pred cCCCHHHHHH---HHHhcCce--ecCCHHHHHHHHHHH
Confidence 3555555433 33333332 237777777777653
No 261
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=34.03 E-value=27 Score=18.80 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=21.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 54 SGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 54 ~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.|.++..-|-.+|+.+......+++..|+..+
T Consensus 47 rgrvskavlvkmlrkly~~tk~e~vkrmlhli 78 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLYEATKNEEVKRMLHLI 78 (79)
T ss_dssp HS-EEHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhhchHHHHHHHHhc
Confidence 37788888888888886555677888877643
No 262
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=33.52 E-value=82 Score=16.86 Aligned_cols=14 Identities=7% Similarity=-0.069 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHh
Q 048414 73 MTEEHGIVLVCTIV 86 (87)
Q Consensus 73 ~~~~ei~~li~~~~ 86 (87)
-+.++++.+|.+++
T Consensus 14 ~s~~el~~~I~daI 27 (65)
T PF14098_consen 14 SSKEELKDTIEDAI 27 (65)
T ss_pred CCHHHHHHHHHHHH
Confidence 45556666665554
No 263
>PRK12318 methionine aminopeptidase; Provisional
Probab=33.28 E-value=1.6e+02 Score=20.10 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 35 SQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 35 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
++.+++.++++ +.|...-+..++..+...+++.||..++..+
T Consensus 45 s~~EIe~~R~A---------a~I~~~a~~a~~~~irpG~tE~Eiaa~~~~~ 86 (291)
T PRK12318 45 TPEQIEKIRKA---------CQVTARILDALCEAAKEGVTTNELDELSREL 86 (291)
T ss_pred CHHHHHHHHHH---------HHHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 67888888888 5566666777777776667888887665543
No 264
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.27 E-value=1.2e+02 Score=18.86 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=27.6
Q ss_pred HHHhhhhCCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHH
Q 048414 43 KEAFELFDTDGSGTIDAKELNVAMRAL--GFEMTEEHGIVLVCTI 85 (87)
Q Consensus 43 ~~~F~~~D~d~~G~I~~~el~~~l~~l--g~~~~~~ei~~li~~~ 85 (87)
--+|+..+.| |.++..|...+..-+ .+.++.+++..+|...
T Consensus 33 ~Llf~Vm~AD--G~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~ 75 (148)
T COG4103 33 ALLFHVMEAD--GTVSESEREAFRAILKENFGIDGEELDALIEAG 75 (148)
T ss_pred HHHHHHHhcc--cCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3678888776 668887765433322 4567888888887643
No 265
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=33.25 E-value=86 Score=17.04 Aligned_cols=48 Identities=19% Similarity=0.092 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHH
Q 048414 36 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL--GFEMTEEHGIVLVC 83 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l--g~~~~~~ei~~li~ 83 (87)
..+...++++|...+.-.-|+-+.-=+..+..-+ +..++.++|++.+.
T Consensus 8 ~~~~~~iq~af~~~~a~QCGfCtpG~im~~~~ll~~~~~p~~~ei~~al~ 57 (75)
T PF01799_consen 8 DGELHPIQQAFVEHGAVQCGFCTPGMIMAAYALLRRNPDPTEEEIREALS 57 (75)
T ss_dssp TTB--HHHHHHHHTT--SSSSSHHHHHHHHHHHHHHSSS-CHHHHHHHTT
T ss_pred CCCcCHHHHHHHHhCCCcCCcchHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 3446679999999999899999988666544333 45788888877653
No 266
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=33.21 E-value=44 Score=17.35 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=17.0
Q ss_pred HHHhhhhCCCCCCcccHHHHHHH
Q 048414 43 KEAFELFDTDGSGTIDAKELNVA 65 (87)
Q Consensus 43 ~~~F~~~D~d~~G~I~~~el~~~ 65 (87)
+-....++.+++|+|..+.+..+
T Consensus 18 ~fL~~~~~~~~~g~Vpi~~i~~F 40 (61)
T PF05383_consen 18 KFLRSQMDSNPDGWVPISTILSF 40 (61)
T ss_dssp HHHHHHHCTTTTTBEEHHHHTTS
T ss_pred HHHHHHHHhcCCCcEeHHHHHch
Confidence 34456678888999999887653
No 267
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=32.98 E-value=56 Score=14.82 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=14.8
Q ss_pred cccHHHHHHHHHHhCCCCC
Q 048414 56 TIDAKELNVAMRALGFEMT 74 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~ 74 (87)
..+..||+..++..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4678899999999988664
No 268
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=32.72 E-value=80 Score=16.48 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHHh-CCCCCHHHHHHHHHHH
Q 048414 57 IDAKELNVAMRAL-GFEMTEEHGIVLVCTI 85 (87)
Q Consensus 57 I~~~el~~~l~~l-g~~~~~~ei~~li~~~ 85 (87)
+..+||+.-|..+ |.-++++|..++.+..
T Consensus 28 ~Gad~lr~klG~IC~~CitpEE~~~I~e~~ 57 (60)
T PF10892_consen 28 IGADDLRVKLGGICGDCITPEEDREILEAT 57 (60)
T ss_pred hChHHHHHHHcchhhccCCHHHHHHHHHHH
Confidence 4556666655543 4556777776666544
No 269
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.72 E-value=98 Score=17.54 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=22.7
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHH
Q 048414 56 TIDAKELNVAMRALGFEMTEEHGIVLVC 83 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~~~ei~~li~ 83 (87)
.-+...|..+|+.+|.+...+.|+..+.
T Consensus 64 ~At~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 64 KASVNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred CcHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 4567889999999999988888876653
No 270
>PRK12897 methionine aminopeptidase; Reviewed
Probab=32.59 E-value=1.5e+02 Score=19.44 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 35 SQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 35 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
++++++.++++ +.|+..-+..++..+...+++.++...+...
T Consensus 6 s~~EI~~~r~A---------~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~ 47 (248)
T PRK12897 6 TKNEIDLMHES---------GKLLASCHREIAKIMKPGITTKEINTFVEAY 47 (248)
T ss_pred CHHHHHHHHHH---------HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHH
Confidence 56778888887 4566666666666666667888877766544
No 271
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=32.47 E-value=42 Score=18.44 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHH
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKE 61 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~e 61 (87)
+.+.+.++++..-|..||.+..|.++...
T Consensus 57 ~~~~~~v~~II~~~~LF~~~~~~iltS~~ 85 (87)
T PF14297_consen 57 GVSEEYVEEIINEYGLFDIEEYGILTSEG 85 (87)
T ss_pred CcCHHHHHHHHHHhCCcccCCCcEEechh
Confidence 45667777777777777776666555443
No 272
>PF13592 HTH_33: Winged helix-turn helix
Probab=32.45 E-value=75 Score=16.11 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=11.4
Q ss_pred cccHHHHHHHHHHhCCC
Q 048414 56 TIDAKELNVAMRALGFE 72 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~ 72 (87)
.++.+-+..+|+.+|+.
T Consensus 21 ~ys~~~v~~lL~r~G~s 37 (60)
T PF13592_consen 21 KYSPSGVYRLLKRLGFS 37 (60)
T ss_pred EEcHHHHHHHHHHcCCc
Confidence 35667777777777763
No 273
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=32.26 E-value=27 Score=19.80 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=15.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHH
Q 048414 53 GSGTIDAKELNVAMRALGFEMTEEH 77 (87)
Q Consensus 53 ~~G~I~~~el~~~l~~lg~~~~~~e 77 (87)
+++.-+.+++..-|+.+|+.++.++
T Consensus 38 Nns~~s~~~~~~~L~~~Gi~~~~~~ 62 (101)
T PF13344_consen 38 NNSSRSREEYAKKLKKLGIPVDEDE 62 (101)
T ss_dssp S-SSS-HHHHHHHHHHTTTT--GGG
T ss_pred CCCCCCHHHHHHHHHhcCcCCCcCE
Confidence 3456777888888888888776544
No 274
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=32.19 E-value=49 Score=19.99 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=11.7
Q ss_pred CCCCCcccHHHHHHHHHHhCC
Q 048414 51 TDGSGTIDAKELNVAMRALGF 71 (87)
Q Consensus 51 ~d~~G~I~~~el~~~l~~lg~ 71 (87)
..|..+|...||+.+|..+|+
T Consensus 13 VGG~nki~MaeLr~~l~~~Gf 33 (137)
T PF08002_consen 13 VGGKNKIKMAELREALEDLGF 33 (137)
T ss_dssp BTTBS---HHHHHHHHHHCT-
T ss_pred cCCCCcccHHHHHHHHHHcCC
Confidence 444556777777777777765
No 275
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=32.17 E-value=85 Score=16.81 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHh
Q 048414 73 MTEEHGIVLVCTIV 86 (87)
Q Consensus 73 ~~~~ei~~li~~~~ 86 (87)
-+.++++.+|..++
T Consensus 13 ~s~~elk~~I~daI 26 (65)
T TIGR03092 13 NTKEQLEATIVDAI 26 (65)
T ss_pred CCHHHHHHHHHHHH
Confidence 35556666665554
No 276
>PRK07758 hypothetical protein; Provisional
Probab=32.15 E-value=47 Score=19.14 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=11.8
Q ss_pred CCcccHHHHHHHHHHhCCC
Q 048414 54 SGTIDAKELNVAMRALGFE 72 (87)
Q Consensus 54 ~G~I~~~el~~~l~~lg~~ 72 (87)
=|.-+.++|+..|...|+.
T Consensus 75 lGkKSL~EIkekL~E~GLs 93 (95)
T PRK07758 75 MGPASLPKLRKALEESGLS 93 (95)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 3666666666666666654
No 277
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.11 E-value=74 Score=21.21 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHhhh-hCCCCCCcccHHHHHHHHHHhCCC
Q 048414 31 HHGLSQQKKQEIKEAFEL-FDTDGSGTIDAKELNVAMRALGFE 72 (87)
Q Consensus 31 ~~~~~~~~~~~l~~~F~~-~D~d~~G~I~~~el~~~l~~lg~~ 72 (87)
...|++++.+.|+.+-+. .|+=.-...+.++++.+|..-|..
T Consensus 141 ~~rltd~q~d~l~~W~~~~~drl~Vnsatr~ev~~alnrtGH~ 183 (225)
T PF09883_consen 141 EARLTDEQVDRLYEWTRDGTDRLNVNSATRSEVRAALNRTGHA 183 (225)
T ss_pred ccccCHHHHHHHHHHhhCCCCeEEEecccHHHHHHHHHhcccc
Confidence 467899999988887764 444344557889999999987754
No 278
>PF05604 DUF776: Protein of unknown function (DUF776); InterPro: IPR008494 This family consists of several highly related Mus musculus and Homo sapiens proteins of unknown function.
Probab=31.96 E-value=37 Score=21.68 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhCCCCCCcccH
Q 048414 36 QQKKQEIKEAFELFDTDGSGTIDA 59 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~ 59 (87)
+.+++-|+.+|+.+-+|-.|.|..
T Consensus 7 d~EEesLQTAFKKLRVDA~~~~as 30 (178)
T PF05604_consen 7 DGEEESLQTAFKKLRVDAEGSIAS 30 (178)
T ss_pred cchHHHHHHHHHHheeccccCeee
Confidence 456788999999999888887654
No 279
>PF13835 DUF4194: Domain of unknown function (DUF4194)
Probab=31.94 E-value=1.3e+02 Score=18.52 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=36.3
Q ss_pred CCCCHHHH---HHHHHHhhhhC---CCCCCcccHHHHHHHHHHhCC-----CCCHHHHHHHHHHH
Q 048414 32 HGLSQQKK---QEIKEAFELFD---TDGSGTIDAKELNVAMRALGF-----EMTEEHGIVLVCTI 85 (87)
Q Consensus 32 ~~~~~~~~---~~l~~~F~~~D---~d~~G~I~~~el~~~l~~lg~-----~~~~~ei~~li~~~ 85 (87)
..++-.+. -.|+..+...+ .++.-.|+.+|+...+..+.. .....+++.++..+
T Consensus 70 ~~L~~~eTilLL~LR~~y~e~~~~~~~~~~~v~~~ei~e~~~~~~~~~~d~~~~~~~~~~~l~~l 134 (166)
T PF13835_consen 70 RRLSLEETILLLVLRLLYEEKESLSGSERVVVTREEIVEKLESFLPESRDEAPFKKRLDAALRRL 134 (166)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhccCCCCcEEEeHHHHHHHHHHHccccccccchHHHHHHHHHHH
Confidence 45554443 35677777776 445567999999999888644 45566777777654
No 280
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=31.90 E-value=74 Score=20.53 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=15.9
Q ss_pred CCCCCcccHHHHHHHHHHhCC
Q 048414 51 TDGSGTIDAKELNVAMRALGF 71 (87)
Q Consensus 51 ~d~~G~I~~~el~~~l~~lg~ 71 (87)
-.-||.|+.+|-..++..++.
T Consensus 90 AkADG~ID~~Er~~I~~~l~~ 110 (188)
T PF04391_consen 90 AKADGHIDEEERQRIEGALQE 110 (188)
T ss_pred HHcCCCCCHHHHHHHHHHHHH
Confidence 356799999999888766643
No 281
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=31.80 E-value=96 Score=17.17 Aligned_cols=16 Identities=6% Similarity=0.204 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHhhh
Q 048414 33 GLSQQKKQEIKEAFEL 48 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~ 48 (87)
.+++.+...++..|..
T Consensus 15 ~v~~~E~~~i~~~l~~ 30 (104)
T cd07313 15 EYDEEERAAIDRLLAE 30 (104)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4667777777777665
No 282
>KOG2463 consensus Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]
Probab=31.78 E-value=30 Score=24.57 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 36 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 36 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
.++.+++.+.|..+ |.||.|+.+.+......+|
T Consensus 165 ~ee~~E~~d~~ed~--DdDgwitp~ni~~~~~e~~ 197 (376)
T KOG2463|consen 165 DEEIEELEDVEEDA--DDDGWITPSNITEAIIELG 197 (376)
T ss_pred chhhhhhhcccccc--ccccccccchHHHHHHhhh
Confidence 35556666666644 5557999999998877665
No 283
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=31.69 E-value=26 Score=17.63 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=22.8
Q ss_pred HhhhhCCCCCCcccHHHHHHHHHHhCCCCC-HHHHHHHHHH
Q 048414 45 AFELFDTDGSGTIDAKELNVAMRALGFEMT-EEHGIVLVCT 84 (87)
Q Consensus 45 ~F~~~D~d~~G~I~~~el~~~l~~lg~~~~-~~ei~~li~~ 84 (87)
+|..+...++|.++.+|+-..+.. .+.. ..-++.+++-
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~~--~~p~~~~~L~RimR~ 49 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLPT--SNPSAPPMLDRIMRL 49 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTSTC--T-TTHHHHHHHHHHH
T ss_pred cHHHHHHcCCCCCCHHHHHHHcCC--CCcchHHHHHHHHHH
Confidence 466666666789999998876642 3333 3355666654
No 284
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=31.66 E-value=96 Score=21.76 Aligned_cols=17 Identities=18% Similarity=0.552 Sum_probs=12.6
Q ss_pred ccHHHHHHHHHHhCCCC
Q 048414 57 IDAKELNVAMRALGFEM 73 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~ 73 (87)
|+..-+..+|+.+|+.+
T Consensus 41 vS~~tV~~lL~~lGYsL 57 (311)
T PF07592_consen 41 VSARTVARLLNRLGYSL 57 (311)
T ss_pred ccHHHHHHHHHHcCcch
Confidence 77777888888777644
No 285
>KOG2351 consensus RNA polymerase II, fourth largest subunit [Transcription]
Probab=31.46 E-value=78 Score=19.31 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=16.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 60 KELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 60 ~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+|-+.++=+++-++++++++++++++
T Consensus 102 EEAkaLvPSL~nkidD~~le~iL~dl 127 (134)
T KOG2351|consen 102 EEAKALVPSLENKIDDDELEQILKDL 127 (134)
T ss_pred HHHHHhccccccccCHHHHHHHHHHH
Confidence 34444444566667777777777664
No 286
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=31.38 E-value=1.1e+02 Score=20.10 Aligned_cols=35 Identities=11% Similarity=0.297 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHhhhhCC--CCCCcccHHHHHHHHHHh
Q 048414 35 SQQKKQEIKEAFELFDT--DGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 35 ~~~~~~~l~~~F~~~D~--d~~G~I~~~el~~~l~~l 69 (87)
+..+.+.|.++|+.+.- .----++..++..+|+.+
T Consensus 30 ~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f 66 (243)
T cd00032 30 TDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEF 66 (243)
T ss_pred hHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHH
Confidence 34555666666666532 112224555566555554
No 287
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=31.30 E-value=42 Score=20.72 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=19.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHG 78 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei 78 (87)
|.|+..++...|...|+.++...|
T Consensus 91 GSVt~~~I~~~l~~~g~~idk~~I 114 (148)
T TIGR00158 91 GSITTKQIADALKAAGLDLDKKKI 114 (148)
T ss_pred EeECHHHHHHHHHHcCCcccHhhE
Confidence 789999999999888988876543
No 288
>PF08839 CDT1: DNA replication factor CDT1 like; InterPro: IPR014939 CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin []. ; PDB: 2WVR_C 2ZXX_F.
Probab=31.28 E-value=1.3e+02 Score=18.59 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhhC------CCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHH
Q 048414 38 KKQEIKEAFELFD------TDGSGTIDAKELNVAMRAL-GFEMTEEHGIVLVC 83 (87)
Q Consensus 38 ~~~~l~~~F~~~D------~d~~G~I~~~el~~~l~~l-g~~~~~~ei~~li~ 83 (87)
.-+.|.+.|+.+| .+.+-.++...+...+..+ +.+++..++.+|..
T Consensus 4 ~y~~L~~~F~~ldtv~~~l~~R~~~~tf~~i~~~Ve~~~kr~F~~~~LaQI~~ 56 (163)
T PF08839_consen 4 KYEFLAELFRALDTVVSMLRNRKETPTFQKIKPSVENMTKRRFTEEHLAQIKY 56 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT---BHHHHHHHHHHHHSS---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcCHHHHHHHHH
Confidence 4456777788777 2334478888898888765 67888888877753
No 289
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.07 E-value=80 Score=21.01 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=22.6
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 51 TDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 51 ~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
...||.|+..|-..++..+-..=.+.+.+.+++.
T Consensus 121 AkaDGhIDe~ERa~I~~~l~esG~d~e~~~~le~ 154 (225)
T COG2979 121 AKADGHIDEKERARIMQKLQESGVDPEAQAFLEQ 154 (225)
T ss_pred HhhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4568999999999888555333334556666554
No 290
>PRK00137 rplI 50S ribosomal protein L9; Reviewed
Probab=30.99 E-value=50 Score=20.30 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=20.2
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHG 78 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei 78 (87)
|.|+..++...|...|+.++...+
T Consensus 91 GsVt~~~I~~~l~~~g~~idk~~I 114 (147)
T PRK00137 91 GSVTTKDIAEALKKQGIEIDKRKI 114 (147)
T ss_pred eeeCHHHHHHHHHHcCCccCHHHe
Confidence 799999999999887988876654
No 291
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=30.69 E-value=51 Score=17.31 Aligned_cols=22 Identities=27% Similarity=0.684 Sum_probs=15.8
Q ss_pred HHhhhhCCCCCCcccHHHHHHHH
Q 048414 44 EAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 44 ~~F~~~D~d~~G~I~~~el~~~l 66 (87)
.||.+| .++.|.|...|+-..|
T Consensus 11 kA~e~y-~~~~g~i~lkdIA~~L 32 (60)
T PF10668_consen 11 KAFEIY-KESNGKIKLKDIAEKL 32 (60)
T ss_pred HHHHHH-HHhCCCccHHHHHHHH
Confidence 456666 5677899988887655
No 292
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=30.68 E-value=1.4e+02 Score=18.64 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHhhhhCCCC-----------------CCcccHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDG-----------------SGTIDAKELNVAMR 67 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~-----------------~G~I~~~el~~~l~ 67 (87)
..++++++++|......+|.|+ +|..+++.|-..|.
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~~~lP~g~Rq~dQT~K~pTG~fdRe~Ll~~le 74 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDNSLLPAGMRQRDQTEKPPTGPFDREALLDYLE 74 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCcccCChhhhcccccCCCCCCCcCHHHHHHHHH
Confidence 4689999999999989999876 46677776666554
No 293
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=30.63 E-value=59 Score=19.38 Aligned_cols=19 Identities=16% Similarity=0.655 Sum_probs=16.4
Q ss_pred CcccHHHHHHHHHHhCCCC
Q 048414 55 GTIDAKELNVAMRALGFEM 73 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~ 73 (87)
|.++...++.+|+.||..+
T Consensus 3 ~~~nprk~rkmmkkmGik~ 21 (115)
T PRK06369 3 GGMNPRKMKQMMKQMGIDV 21 (115)
T ss_pred CCCCHHHHHHHHHHcCCcc
Confidence 6688999999999999864
No 294
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=30.53 E-value=1.3e+02 Score=18.14 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=22.6
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+..+-+.+...+-..-..+.-..+|+.-| ++++||++++..+
T Consensus 6 i~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a 47 (136)
T PF04695_consen 6 IEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRA 47 (136)
T ss_dssp HHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHH
T ss_pred HHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhc
Confidence 44444444433333344556666777665 5777888777654
No 295
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=30.39 E-value=1.8e+02 Score=19.78 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.++++++.++++ |.|...-|..+...+--.++..||+.+.++.+
T Consensus 6 kt~~eiek~r~A---------g~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i 49 (255)
T COG0024 6 KTPEEIEKMREA---------GKIAAKALKEVASLVKPGVTTLELDEIAEEFI 49 (255)
T ss_pred CCHHHHHHHHHH---------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 467788888887 77777777766666556678888888877654
No 296
>PRK13704 plasmid SOS inhibition protein A; Provisional
Probab=30.16 E-value=81 Score=21.25 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=20.1
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
.+.-|+.+ +|.|.|+..|++...-.+
T Consensus 41 a~aFfr~L--tGs~rI~~~dvr~~~p~~ 66 (240)
T PRK13704 41 AKAFFRCL--NGSRRISLSDLRFFMPSL 66 (240)
T ss_pred HHHHHHHh--cCCCcccHHHHHHhCCCC
Confidence 45567777 699999999999876544
No 297
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=30.11 E-value=89 Score=16.22 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=18.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 54 SGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 54 ~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.|.++..+|..-| +++.+.|+.|+..++
T Consensus 12 ~~~~S~~eLa~~~-----~~s~~~ve~mL~~l~ 39 (69)
T PF09012_consen 12 RGRVSLAELAREF-----GISPEAVEAMLEQLI 39 (69)
T ss_dssp S-SEEHHHHHHHT-----T--HHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHH-----CcCHHHHHHHHHHHH
Confidence 4778888877544 568888888888765
No 298
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=30.09 E-value=1.4e+02 Score=18.99 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
....+|+++|+.--+.+....+.--|-.+++.+
T Consensus 33 tdT~~Lr~aFr~pPkS~Gk~Fs~~~Lf~LI~k~ 65 (175)
T PF09441_consen 33 TDTSELREAFRSPPKSDGKSFSTFTLFELIRKL 65 (175)
T ss_pred CCHHHHHHHhcCCCCcCCccchHHHHHHHHHHH
Confidence 345678888888776665566666665555543
No 299
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=30.02 E-value=91 Score=22.92 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMR 67 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~ 67 (87)
.....+.++.++++|+.|-+ |.|+.+||---+.
T Consensus 120 ~d~~de~~e~lrevlh~YKK---G~idGDdLv~eIa 152 (536)
T COG2024 120 IDEPDEKVERLREVLHAYKK---GEIDGDDLVHEIA 152 (536)
T ss_pred CCCchhhHHHHHHHHHHHhc---CCCCcchhHHHHH
Confidence 45667778999999999855 7888888765443
No 300
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=29.95 E-value=99 Score=16.71 Aligned_cols=14 Identities=7% Similarity=-0.040 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHh
Q 048414 73 MTEEHGIVLVCTIV 86 (87)
Q Consensus 73 ~~~~ei~~li~~~~ 86 (87)
-+.++++.+|.+++
T Consensus 16 ~s~eel~~~I~daI 29 (68)
T PRK02955 16 NSKEELEGTIVDAI 29 (68)
T ss_pred CCHHHHHHHHHHHH
Confidence 46666777666654
No 301
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=29.82 E-value=69 Score=17.79 Aligned_cols=21 Identities=24% Similarity=0.639 Sum_probs=17.9
Q ss_pred CcccHHHHHHHHHHh-CCCCCH
Q 048414 55 GTIDAKELNVAMRAL-GFEMTE 75 (87)
Q Consensus 55 G~I~~~el~~~l~~l-g~~~~~ 75 (87)
|.|+..++...|... |+.++.
T Consensus 30 GSVt~~dIa~~l~~~~g~~Idk 51 (87)
T PF03948_consen 30 GSVTSKDIAKALKEQTGIEIDK 51 (87)
T ss_dssp SEBSHHHHHHHHHHCCSSSSSS
T ss_pred cCcCHHHHHHHHHHhhCCeEec
Confidence 899999999999987 877654
No 302
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.58 E-value=49 Score=26.45 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=29.0
Q ss_pred ccccCCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 27 IRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 27 ~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
.++.-+.|+..- |-.++..-|.|+||.++..|+.-+|+-+
T Consensus 39 nfflqS~LP~~V---LaqIWALsDldkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 39 NFFLQSGLPTPV---LAQIWALSDLDKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred hhHHhcCCChHH---HHHHHHhhhcCccccchHHHHHHHHHHH
Confidence 334445555433 5667788899999999999999887753
No 303
>PF09987 DUF2226: Uncharacterized protein conserved in archaea (DUF2226); InterPro: IPR019249 This entry includes hypothetical proteins of unknown function.
Probab=29.47 E-value=85 Score=21.84 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHHh
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE-MTEEHGIVLVCTIV 86 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~-~~~~ei~~li~~~~ 86 (87)
+..+..+.+.+.++ +.+ .+++++| |+.+|.+ ++++.|+.++..+.
T Consensus 160 ~gk~A~e~~eEii~----E~~-slsReeL---LKklgIk~p~ee~Ie~lle~~f 205 (297)
T PF09987_consen 160 FGKSAKEEFEEIIK----EEN-SLSREEL---LKKLGIKEPDEEEIENLLEDYF 205 (297)
T ss_pred cchhHHHHHHHHhc----CCc-cCCHHHH---HHHhCCCCCCHHHHHHHHHHHH
Confidence 33444444444443 222 3888776 5778976 67788999988765
No 304
>PF11181 YflT: Heat induced stress protein YflT
Probab=29.41 E-value=1.1e+02 Score=17.24 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 60 KELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 60 ~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
++++..|..+| ++.++++..-+++.
T Consensus 71 d~~~~~l~~lG--l~~~ea~~y~~~l~ 95 (103)
T PF11181_consen 71 DELRSKLESLG--LSEDEAERYEEELD 95 (103)
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 46889999988 68888888777664
No 305
>PRK07281 methionine aminopeptidase; Reviewed
Probab=29.37 E-value=1.9e+02 Score=19.74 Aligned_cols=42 Identities=12% Similarity=-0.119 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 35 SQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 35 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
++++++.++++ |.|...-+..++..+-..+++.+|...+...
T Consensus 6 s~~EI~~mr~A---------~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~ 47 (286)
T PRK07281 6 SAREIEAMDRA---------GDFLASIHIGLRDLIKPGVDMWEVEEYVRRR 47 (286)
T ss_pred CHHHHHHHHHH---------HHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 56777888877 4566655666666665557788887766543
No 306
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=29.18 E-value=34 Score=19.41 Aligned_cols=16 Identities=31% Similarity=0.545 Sum_probs=12.3
Q ss_pred CCCCCCcccHHHHHHH
Q 048414 50 DTDGSGTIDAKELNVA 65 (87)
Q Consensus 50 D~d~~G~I~~~el~~~ 65 (87)
|.|+.|.|+.+.++++
T Consensus 69 ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQI 84 (87)
T ss_pred cCCCCccccchhhhhh
Confidence 3567799999888765
No 307
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=29.08 E-value=62 Score=25.69 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=32.9
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+-...+.||...+|.|..-+++..+-.+.--...+.+..+|..+
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~v 515 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQV 515 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHH
Confidence 45567889999999999999888776665445566666776654
No 308
>PF13276 HTH_21: HTH-like domain
Probab=28.77 E-value=87 Score=15.66 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRAL-GFEMTEEHGIVLVCTI 85 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-g~~~~~~ei~~li~~~ 85 (87)
.+.++.+|... .+.....-+...|..- |..++...|..+++++
T Consensus 7 ~~~I~~i~~~~----~~~yG~rri~~~L~~~~~~~v~~krV~RlM~~~ 50 (60)
T PF13276_consen 7 RELIKEIFKES----KPTYGYRRIWAELRREGGIRVSRKRVRRLMREM 50 (60)
T ss_pred HHHHHHHHHHc----CCCeehhHHHHHHhccCcccccHHHHHHHHHHc
Confidence 44566666633 3455666666777766 4667777777777653
No 309
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=28.71 E-value=68 Score=20.82 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=26.5
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 048414 50 DTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 50 D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~ 84 (87)
.-++||++..++|-.+=.--|.+-+-+++..+++.
T Consensus 28 ~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ 62 (207)
T KOG2278|consen 28 NMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKR 62 (207)
T ss_pred cccCCCceEHHHHhccchhcccCCcHHHHHHHHhc
Confidence 46789999999988765545666778888887754
No 310
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=28.65 E-value=89 Score=16.23 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=5.2
Q ss_pred CCHHHHHHHHHHh
Q 048414 34 LSQQKKQEIKEAF 46 (87)
Q Consensus 34 ~~~~~~~~l~~~F 46 (87)
++..+.+.+....
T Consensus 13 ls~~e~~~i~~~~ 25 (73)
T TIGR01446 13 LSPFEMEDLKYWL 25 (73)
T ss_pred CCHHHHHHHHHHH
Confidence 3334444444333
No 311
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=28.64 E-value=74 Score=23.11 Aligned_cols=28 Identities=29% Similarity=0.601 Sum_probs=21.3
Q ss_pred CCCCHHHHH-HHHHHhhhhCC-CCCCcccH
Q 048414 32 HGLSQQKKQ-EIKEAFELFDT-DGSGTIDA 59 (87)
Q Consensus 32 ~~~~~~~~~-~l~~~F~~~D~-d~~G~I~~ 59 (87)
..|++++.+ +-.+.|..||+ ..+|.|..
T Consensus 405 ~~mt~eeke~ea~~l~~lf~rl~~~g~i~~ 434 (446)
T PF10165_consen 405 PEMTEEEKEREAERLFVLFDRLEKTGVIQV 434 (446)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhCCCcCc
Confidence 467776664 67888999986 67788876
No 312
>PF09687 PRESAN: Plasmodium RESA N-terminal; InterPro: IPR019111 The short, four-helical domain first identified in the Plasmodium export proteins PHISTa and PHISTc [] has been extended to become this six-helical PRESAC domain identified in the P. falciparum-specific RESA-type (Ring-infected erythrocyte surface antigen) proteins in association with the DnaJ domain. Overall, at least 67 proteins have been detected in P. falciparum with complete copies of the PRESAC domain. No versions of this domain were detected in other apicomplexan genera, suggesting that the domain was 'invented' after the divergence of the lineage leading to the genus Plasmodium undergoing a dramatic proliferation only in P. falciparum. A secondary structure-prediction derived from the multiple alignment of the PRESAC family reveals that it is composed of an all-helical fold with six conserved helical segments. There is some evidence it might localise to membranes [].
Probab=28.56 E-value=1.2e+02 Score=17.19 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
++.++|...+..++..++..++..++..+
T Consensus 6 lt~~ei~~~i~~l~~~~~k~~m~~iw~~~ 34 (129)
T PF09687_consen 6 LTDEEINKKINSLGEFVSKKDMYNIWNQV 34 (129)
T ss_pred hhHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 45556666666666556666665555443
No 313
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.54 E-value=1.4e+02 Score=18.12 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
..+++++.++++.---.|= -.+|.++..++..+. | ++...+...+.++.
T Consensus 3 ~~~T~eer~eLk~rIvElV-Re~GRiTi~ql~~~T---G--asR~Tvk~~lreLV 51 (127)
T PF06163_consen 3 RVFTPEEREELKARIVELV-REHGRITIKQLVAKT---G--ASRNTVKRYLRELV 51 (127)
T ss_pred CcCCHHHHHHHHHHHHHHH-HHcCCccHHHHHHHH---C--CCHHHHHHHHHHHH
Confidence 4677788777765543332 245889998887655 2 34555666665554
No 314
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=28.28 E-value=1.1e+02 Score=16.78 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRA-LGFEMTEEHGIVLVC 83 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~-lg~~~~~~ei~~li~ 83 (87)
..++.+++..++.+|+.+=..+ .+.++-...+.. .+. ..+++.++.
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~~~~~---~~~v~~~~~ 72 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSG---LTLEEALEELEEEYPD---SPEVREIVD 72 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHHHTTS---CHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHhccC---CHHHHHHHH
Confidence 5789999999999999986643 355555555544 332 345665554
No 315
>PF14165 YtzH: YtzH-like protein
Probab=28.05 E-value=1.2e+02 Score=17.17 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhhCCCCCCccc-HHHHHHHHHHhCC--CCCHHHHHHHHHHHh
Q 048414 37 QKKQEIKEAFELFDTDGSGTID-AKELNVAMRALGF--EMTEEHGIVLVCTIV 86 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~-~~el~~~l~~lg~--~~~~~ei~~li~~~~ 86 (87)
.++.-|+.+..-...|.-|+++ .+.+.+++++|-. .+ ...|..++.+|+
T Consensus 5 hQl~LLkDIL~~hq~DccgTvsEcEQieRLvksLm~n~~i-~~~ik~~L~~Iy 56 (87)
T PF14165_consen 5 HQLTLLKDILSNHQLDCCGTVSECEQIERLVKSLMANPNI-DADIKQTLEEIY 56 (87)
T ss_pred HHHHHHHHHHHhhhhhccCcHHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHH
Confidence 3556677777777777777777 3556666666522 23 455666666654
No 316
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=27.90 E-value=1e+02 Score=16.61 Aligned_cols=17 Identities=6% Similarity=0.194 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHHHhhhh
Q 048414 33 GLSQQKKQEIKEAFELF 49 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~ 49 (87)
.++.++.+.+...+...
T Consensus 15 ~i~~~E~~~i~~~~~~~ 31 (104)
T cd07177 15 RVDEEEIAAIEALLRRL 31 (104)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 34455555555555443
No 317
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=27.88 E-value=1.2e+02 Score=16.90 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHH
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVA 65 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~ 65 (87)
++.+.+..=+-..+.++.+.+|+|..+-+..+
T Consensus 17 FSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F 48 (82)
T cd08032 17 FGDVNLHKDRFLREQIEKSRDGYIDISLLVSF 48 (82)
T ss_pred cchhhcccCHHHHHHhcCCCCCCEeHHHHhcc
Confidence 34444433344566678888999999877654
No 318
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=27.75 E-value=26 Score=23.81 Aligned_cols=16 Identities=38% Similarity=0.889 Sum_probs=13.1
Q ss_pred hhhhCCCCCCcccHHH
Q 048414 46 FELFDTDGSGTIDAKE 61 (87)
Q Consensus 46 F~~~D~d~~G~I~~~e 61 (87)
|..||.|++|.|+..|
T Consensus 92 f~~yD~dgDG~vd~~d 107 (286)
T TIGR03296 92 FDRYDLDGDGNFDEPD 107 (286)
T ss_pred cccccccCCCccCCCC
Confidence 6678999999998744
No 319
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=27.72 E-value=99 Score=18.04 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=8.7
Q ss_pred CCCcccHHHHHHHHHH
Q 048414 53 GSGTIDAKELNVAMRA 68 (87)
Q Consensus 53 ~~G~I~~~el~~~l~~ 68 (87)
....++.+++..++..
T Consensus 64 ~~~~~s~~eIe~~ie~ 79 (113)
T PF12363_consen 64 EKKRPSREEIEDYIED 79 (113)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3344566666666554
No 320
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=27.68 E-value=88 Score=15.87 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=11.5
Q ss_pred HHHHHHHhCCCCCHHHHHHHH
Q 048414 62 LNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 62 l~~~l~~lg~~~~~~ei~~li 82 (87)
+++++...|. ++++++++++
T Consensus 28 vre~v~~~g~-lt~ee~d~ll 47 (55)
T PF10415_consen 28 VREVVLEEGL-LTEEELDELL 47 (55)
T ss_dssp HHHHHHHTTS-S-HHHHHHHT
T ss_pred HHHHHHHcCC-CCHHHHHHHc
Confidence 5555555553 6777777665
No 321
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=27.63 E-value=80 Score=14.89 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=14.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHH
Q 048414 63 NVAMRALGFEMTEEHGIVLVC 83 (87)
Q Consensus 63 ~~~l~~lg~~~~~~ei~~li~ 83 (87)
-.+|..+|...+..++..+|.
T Consensus 4 d~~L~~~~~~~sr~~a~~~I~ 24 (48)
T PF01479_consen 4 DKFLSRLGLASSRSEARRLIK 24 (48)
T ss_dssp HHHHHHTTSSSSHHHHHHHHH
T ss_pred HHHHHHcCCcCCHHHHHHhcC
Confidence 346666777777888877775
No 322
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=27.58 E-value=1.3e+02 Score=17.43 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHH-hhhh-----CCCCCCcccHHHHHHHHHHhCC----------CCCHHHHHHHHHHH
Q 048414 32 HGLSQQKKQEIKEA-FELF-----DTDGSGTIDAKELNVAMRALGF----------EMTEEHGIVLVCTI 85 (87)
Q Consensus 32 ~~~~~~~~~~l~~~-F~~~-----D~d~~G~I~~~el~~~l~~lg~----------~~~~~ei~~li~~~ 85 (87)
..++.+++..+.+. |+.+ |.+..|.-+..++..+.+.+|+ .++.+.+..+.+.+
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l 82 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADAL 82 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHH
Confidence 45677888877665 6655 3444566777788888887765 35566666655443
No 323
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.40 E-value=1.5e+02 Score=17.98 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.+|...+.-+.-++. .++.++++++-..|+.-+..++...|-..++.+.
T Consensus 18 r~T~qR~~vl~~L~~-----~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 18 RLTPQRLAVLELLLE-----ADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred CcCHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 355555544444432 3345999999999998888888777766666543
No 324
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.26 E-value=70 Score=14.14 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHH
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMR 67 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~ 67 (87)
+.+..++..|. .|.|+.+|+...-.
T Consensus 3 ~~L~~L~~l~~------~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 3 DRLEKLKELYD------KGEISEEEYEQKKA 27 (31)
T ss_pred HHHHHHHHHHH------cCCCCHHHHHHHHH
Confidence 34455555554 38888888876544
No 325
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=27.19 E-value=72 Score=18.62 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=14.0
Q ss_pred CCcccHHHHHHHHHHh--CCCCCHHHHHHHHH
Q 048414 54 SGTIDAKELNVAMRAL--GFEMTEEHGIVLVC 83 (87)
Q Consensus 54 ~G~I~~~el~~~l~~l--g~~~~~~ei~~li~ 83 (87)
||.|+.+|+..+...+ ...++..+...++.
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~ 68 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIE 68 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 5677777766655544 22233444444443
No 326
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=27.16 E-value=48 Score=20.65 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=14.6
Q ss_pred HHH-HHHHHHhCCCCCHHHHHHHHH
Q 048414 60 KEL-NVAMRALGFEMTEEHGIVLVC 83 (87)
Q Consensus 60 ~el-~~~l~~lg~~~~~~ei~~li~ 83 (87)
.-| ..+|+.+|+.++.+.++.++.
T Consensus 58 ~~Ln~kvl~kl~~~l~~~~i~~i~~ 82 (158)
T PF06294_consen 58 ETLNEKVLKKLGIKLDKEDIEGIIN 82 (158)
T ss_dssp HHHHHHTTGGGT----HHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHh
Confidence 446 667788888888888887764
No 327
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=27.03 E-value=1.2e+02 Score=22.01 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 60 KELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 60 ~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.||+.+|..++.+++..++..++.++.
T Consensus 161 hDLksl~d~m~q~F~~~evK~L~~QlL 187 (419)
T KOG0663|consen 161 HDLKSLMETMKQPFLPGEVKTLMLQLL 187 (419)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHH
Confidence 678889999998999999988887764
No 328
>PHA02517 putative transposase OrfB; Reviewed
Probab=26.98 E-value=1.9e+02 Score=19.04 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.+.++.+|.. ..+......+...|+..|..++...|..+++++
T Consensus 32 ~~~I~~i~~~----~~~~~G~r~I~~~L~~~g~~vs~~tV~Rim~~~ 74 (277)
T PHA02517 32 KSEILRVYDE----NHQVYGVRKVWRQLNREGIRVARCTVGRLMKEL 74 (277)
T ss_pred HHHHHHHHHH----hCCCCCHHHHHHHHHhcCcccCHHHHHHHHHHc
Confidence 3445555542 234567788888888888888888888888764
No 329
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=26.94 E-value=1.8e+02 Score=19.44 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhhCCC--CCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHH
Q 048414 37 QKKQEIKEAFELFDTD--GSGTIDAKELNVAMRALGFE---MTEEHGIVLVCT 84 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d--~~G~I~~~el~~~l~~lg~~---~~~~ei~~li~~ 84 (87)
.-...|+.+|..+-.. ..+.|++.+|..+|...+.. ..+++..+++..
T Consensus 22 ~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~~~~QqDA~EFl~~ 74 (300)
T cd02663 22 NLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNF 74 (300)
T ss_pred HHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCCCCccccHHHHHHH
Confidence 3456788889888654 35679999999999865422 234555555443
No 330
>COG0080 RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis]
Probab=26.75 E-value=1.3e+02 Score=18.63 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=21.6
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 52 DGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 52 d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+.-|.|+.+++..+-+.--..+...+++..++++
T Consensus 94 ~~vG~lt~~qv~eIA~~K~~dl~a~~l~aA~k~I 127 (141)
T COG0080 94 NKVGKLTLAQVREIAKTKMPDLNAKDLEAAVKEI 127 (141)
T ss_pred ceeeeeeHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 3457788888877766544456666666666554
No 331
>PHA03415 putative internal virion protein; Provisional
Probab=26.69 E-value=1.4e+02 Score=24.03 Aligned_cols=39 Identities=31% Similarity=0.413 Sum_probs=29.2
Q ss_pred HHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q 048414 41 EIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 41 ~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li 82 (87)
..-+.|..||++=+|+ .+..++|+.+|+..+++.++.+-
T Consensus 90 ~~~e~f~~~dp~fd~k---r~~~d~l~~~g~~~t~~~l~~la 128 (1019)
T PHA03415 90 DRDEMFNDFDPNFDGK---REAGDILNAHGIEDTDDHLEALA 128 (1019)
T ss_pred cHHHhcccCCCCccch---HHHHHHHHHcCCCCchhHHHHHH
Confidence 3456788888877764 56667888899988888877664
No 332
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=26.66 E-value=1e+02 Score=15.92 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=8.9
Q ss_pred hhhCCCCCCcccHHHHHHHHHH
Q 048414 47 ELFDTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 47 ~~~D~d~~G~I~~~el~~~l~~ 68 (87)
..|-....|.++..+...+..-
T Consensus 3 ~~~e~~~~~~~s~~e~~~l~~~ 24 (77)
T PF07261_consen 3 EFYEKNFGRPPSPSEIEKLEKW 24 (77)
T ss_dssp HHHHCCCTSS--HHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHH
Confidence 3333444455555555444433
No 333
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=26.63 E-value=1.1e+02 Score=16.19 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=24.3
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHH
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRAL----GFEMTEEHGIVLVC 83 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~l----g~~~~~~ei~~li~ 83 (87)
..+..+...++..-.--+-..+|+.++..+ |...+++-++.+|+
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs 70 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFS 70 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 345555555555444456678888888776 54455555555553
No 334
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=26.51 E-value=1.8e+02 Score=18.60 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCC
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE 72 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~ 72 (87)
..++++-++++.++|..+-.+ ++-+..++|..+|..|..+
T Consensus 6 ~ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP 45 (170)
T PF08730_consen 6 EKIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIP 45 (170)
T ss_pred ccCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCC
Confidence 367888899999999999664 5669999999999998653
No 335
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=26.30 E-value=1.6e+02 Score=18.01 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHHHhC
Q 048414 50 DTDGSGTIDAKELNVAMRALG--FEMTEEHGIVLVCTIVE 87 (87)
Q Consensus 50 D~d~~G~I~~~el~~~l~~lg--~~~~~~ei~~li~~~~e 87 (87)
-.++.|..+....+.+|+.+. ..++.+.+++++..+.+
T Consensus 98 P~~~~g~~N~~~~~kvL~~~~~k~~l~~~~~~~~~~~l~~ 137 (139)
T PF12243_consen 98 PPDNSGAANLKSVRKVLKNWSKKKILDPEEYEEIEASLKE 137 (139)
T ss_pred CCCCccchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc
Confidence 467788888888888888763 45788888888876643
No 336
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=26.23 E-value=1.6e+02 Score=17.83 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHhhhhCCCCCCcccHHHHHHHHHH--hCCCCCHHHHHHHHHHHh
Q 048414 42 IKEAFELFDTDGSGTIDAKELNVAMRA--LGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 42 l~~~F~~~D~d~~G~I~~~el~~~l~~--lg~~~~~~ei~~li~~~~ 86 (87)
....|..+...+.++|...-|-....- .|..+..+.+..+|+-++
T Consensus 23 a~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VIetll 69 (130)
T COG5611 23 AEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVIETLL 69 (130)
T ss_pred HHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 566788888888999998777765543 478889998888887543
No 337
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=26.20 E-value=15 Score=16.65 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=13.2
Q ss_pred HHhhhhCCCCCCcccHHHH
Q 048414 44 EAFELFDTDGSGTIDAKEL 62 (87)
Q Consensus 44 ~~F~~~D~d~~G~I~~~el 62 (87)
.+...-|.|++-.|+.+|-
T Consensus 3 ~LL~qEDTDgn~qITIeD~ 21 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIEDT 21 (30)
T ss_pred hHhhccccCCCcEEEEecC
Confidence 3445568888888887653
No 338
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=25.93 E-value=1.3e+02 Score=16.62 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=8.6
Q ss_pred CCCHHHHHHHHHHhh
Q 048414 33 GLSQQKKQEIKEAFE 47 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~ 47 (87)
.++.++...+...|.
T Consensus 18 ~v~~~E~~~i~~~l~ 32 (111)
T cd07176 18 DIDDAELQAIEALLR 32 (111)
T ss_pred CCCHHHHHHHHHHHH
Confidence 345556666666655
No 339
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.92 E-value=1.7e+02 Score=18.48 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHhhhhCCCCC-CcccHHHHHHHHHHhCCC
Q 048414 31 HHGLSQQKKQEIKEAFELFDTDGS-GTIDAKELNVAMRALGFE 72 (87)
Q Consensus 31 ~~~~~~~~~~~l~~~F~~~D~d~~-G~I~~~el~~~l~~lg~~ 72 (87)
..+|+.++.+.|+..+..+-+|+. -.+..--|+.+|..+|..
T Consensus 95 ~eeLs~deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~g~~ 137 (158)
T PF10083_consen 95 DEELSPDEKEQFKESLPDLTKDTPKTKVAATRFKKILSKAGSI 137 (158)
T ss_pred hhcCCHHHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHHhHH
Confidence 357899999999999988877653 235566677888888753
No 340
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=25.91 E-value=95 Score=15.18 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=14.6
Q ss_pred cccHHHHHHHHHHhCCCC
Q 048414 56 TIDAKELNVAMRALGFEM 73 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~ 73 (87)
.++-.||+.-|...|+..
T Consensus 5 ~LSd~eL~~~L~~~G~~~ 22 (44)
T smart00540 5 RLSDAELRAELKQYGLPP 22 (44)
T ss_pred HcCHHHHHHHHHHcCCCC
Confidence 467889999999998753
No 341
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=25.77 E-value=1.5e+02 Score=19.68 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL 69 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l 69 (87)
.-...|+.+|..+...+ +.|++.+|...|...
T Consensus 44 ~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~ 75 (305)
T cd02657 44 NLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMA 75 (305)
T ss_pred HHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHH
Confidence 34567889999886544 378999988888764
No 342
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=25.72 E-value=1.3e+02 Score=16.68 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHH----hCCCCCHHHHHHHHHHHh
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRA----LGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~----lg~~~~~~ei~~li~~~~ 86 (87)
.+.+++..|...+...|-. +...++.+.+. .|.+++.+..+.+++.+.
T Consensus 10 V~~~~i~kLA~sv~~adlq-----dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~ 61 (79)
T PF14069_consen 10 VNKEDIFKLANSVQKADLQ-----DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAII 61 (79)
T ss_pred CCHHHHHHHHHhcchhhcc-----cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4555665666665555432 34455555554 488899999888888764
No 343
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=25.62 E-value=1.3e+02 Score=16.79 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=17.8
Q ss_pred CCCCCCcccHHHHHHHHHHhCCC
Q 048414 50 DTDGSGTIDAKELNVAMRALGFE 72 (87)
Q Consensus 50 D~d~~G~I~~~el~~~l~~lg~~ 72 (87)
+..+.-+|+.+|+.-+|+..|.+
T Consensus 59 ~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 59 EHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred HhcCCCcCcHHHHHHHHHHCCCC
Confidence 44566779999999999888854
No 344
>CHL00127 rpl11 ribosomal protein L11; Validated
Probab=25.58 E-value=89 Score=19.20 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=21.6
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 52 DGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 52 d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+..|.|+.+++..+-+..-.++....++..++++
T Consensus 95 ~~~G~it~~~v~eIA~~K~~d~~~~~l~~~vk~v 128 (140)
T CHL00127 95 KKVGSITIKQLEEIAQIKLPDLNTISLSKAIKII 128 (140)
T ss_pred eecceecHHHHHHHHHHHhhhhccccHHHHHHHh
Confidence 4468888888888766544444445555555554
No 345
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=25.52 E-value=1.3e+02 Score=19.21 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=18.6
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 51 TDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 51 ~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
-|.+|+++ .++..+...++ ++.+++..+++.+
T Consensus 45 LD~~GyL~-~~~~eia~~l~--~~~~~v~~~l~~l 76 (194)
T PF04963_consen 45 LDDDGYLT-ESLEEIAEELG--VSEEEVEKALELL 76 (194)
T ss_dssp BTTTSTCS-S-HHHHHHHCT--S-HHHHHHHHHHH
T ss_pred CCCCCccC-CCHHHHHHHhC--CCHHHHHHHHHHH
Confidence 46678877 33444455555 6777777776654
No 346
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=25.37 E-value=1.7e+02 Score=18.04 Aligned_cols=45 Identities=13% Similarity=0.317 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
++....+-++.+|.... +.|++...++...| +++...+.++++.+
T Consensus 4 ~s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L-----~Vsp~sVt~ml~rL 48 (154)
T COG1321 4 LSETEEDYLETIYELLE--EKGFARTKDIAERL-----KVSPPSVTEMLKRL 48 (154)
T ss_pred cchHHHHHHHHHHHHHh--ccCcccHHHHHHHh-----CCCcHHHHHHHHHH
Confidence 45556667777777776 67899999988776 24445566666554
No 347
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=25.26 E-value=1.3e+02 Score=16.56 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVL 81 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~l 81 (87)
|...+.+.+.+.+| +++.+|+.+
T Consensus 9 v~~~~wk~~~R~LG--lse~~Id~i 31 (80)
T cd08313 9 VPPRRWKEFVRRLG--LSDNEIERV 31 (80)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHH
Confidence 55666677777776 455555544
No 348
>PF07508 Recombinase: Recombinase; InterPro: IPR011109 This domain is usually found associated with IPR006119 from INTERPRO in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.
Probab=24.96 E-value=1.3e+02 Score=16.40 Aligned_cols=44 Identities=14% Similarity=0.337 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCC------CCHHHHHHHHHH
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE------MTEEHGIVLVCT 84 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~------~~~~ei~~li~~ 84 (87)
++.+-++.+|..|- ++ .+...+...|...|.. ++...|..|+..
T Consensus 2 eea~vVr~if~~~~-~g---~s~~~I~~~ln~~gi~~~~~~~W~~~~v~~iL~n 51 (102)
T PF07508_consen 2 EEAEVVREIFELYL-EG---YSLRQIARELNEKGIPTPRGKKWSKSTVRRILRN 51 (102)
T ss_pred hHHHHHHHHHHHHH-cC---CCHHHHHHHHHhcCCccccCCcccHHHHHHHHhh
Confidence 45667899999997 32 5566677777776653 456667666653
No 349
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=24.86 E-value=1.7e+02 Score=19.62 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=27.7
Q ss_pred HHHHHHHhhhh-CCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHH
Q 048414 39 KQEIKEAFELF-DTDGSGTIDAKELNVAMRALGF---EMTEEHGIVLVCT 84 (87)
Q Consensus 39 ~~~l~~~F~~~-D~d~~G~I~~~el~~~l~~lg~---~~~~~ei~~li~~ 84 (87)
...|.++|..+ ..+..+.+....+..++..... ...+++..+++..
T Consensus 48 ~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDa~Efl~~ 97 (328)
T cd02660 48 SCAMDEIFQEFYYSGDRSPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQF 97 (328)
T ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhhchhhcccccccHHHHHHH
Confidence 45688899999 5555667888877776644321 1234445444443
No 350
>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=24.74 E-value=1.8e+02 Score=17.86 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHH-HhCCCCCHHHHHHHHHH
Q 048414 31 HHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMR-ALGFEMTEEHGIVLVCT 84 (87)
Q Consensus 31 ~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~-~lg~~~~~~ei~~li~~ 84 (87)
...++.++++.+...-..-| .+..++...|. ..|..++...+..++++
T Consensus 61 P~kl~~~q~~~l~e~~~~k~------wTl~~~~~~l~~e~gv~y~~~~v~~~l~~ 109 (138)
T COG3415 61 PRKLSEEQLEILLERLREKD------WTLKELVEELGLEFGVWYHASAVRRLLHE 109 (138)
T ss_pred CcccCHHHHHHHHHHHhccc------chHHHHHHHHhhhcCeEEeHHHHHHHHHH
Confidence 35677777777766654433 55555554443 34555555555555443
No 351
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=24.74 E-value=1.2e+02 Score=16.27 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 59 AKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 59 ~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..||...+..-. .++..++..++..+
T Consensus 3 k~eli~~ia~~~-~~s~~~v~~vl~~~ 28 (90)
T PF00216_consen 3 KKELIKRIAEKT-GLSKKDVEAVLDAL 28 (90)
T ss_dssp HHHHHHHHHHHH-TSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 344444444321 14555555555544
No 352
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.59 E-value=1.8e+02 Score=17.79 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=16.1
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
|.|+.+|-+.+|. +...++.++|+.=.+.+
T Consensus 54 ~~iTlqEa~qILn-V~~~ln~eei~k~yehL 83 (132)
T KOG3442|consen 54 GKITLQEAQQILN-VKEPLNREEIEKRYEHL 83 (132)
T ss_pred ccccHHHHhhHhC-CCCCCCHHHHHHHHHHH
Confidence 5566666666663 23345556665444433
No 353
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=24.40 E-value=1.2e+02 Score=19.21 Aligned_cols=40 Identities=33% Similarity=0.534 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHhhhh------------CCCCCCcccHHHHHHHHHHhCCC
Q 048414 33 GLSQQKKQEIKEAFELF------------DTDGSGTIDAKELNVAMRALGFE 72 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~------------D~d~~G~I~~~el~~~l~~lg~~ 72 (87)
.++.+-.+.++++...| -..+..+|+.+||-.+|..||+.
T Consensus 51 KIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLGFe 102 (168)
T KOG0869|consen 51 KISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLGFE 102 (168)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcCcH
Confidence 35555555555554333 35667899999999999999974
No 354
>PF10548 P22_AR_C: P22AR C-terminal domain; InterPro: IPR018876 This entry represents the carboxy-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018875 from INTERPRO.
Probab=24.39 E-value=1.3e+02 Score=16.29 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCC
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMT 74 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~ 74 (87)
..|+++++..|--++..++. +.-...+|.-+|+.+|-++.
T Consensus 6 ~~fTe~El~~L~Wlw~~~~~---m~~~~~~l~p~L~~lgS~~a 45 (74)
T PF10548_consen 6 FQFTEEELQSLVWLWFAAER---MRELCQELYPALKALGSNYA 45 (74)
T ss_pred cccCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCcC
Confidence 67889999888777776655 44566778888988887654
No 355
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=24.35 E-value=40 Score=15.66 Aligned_cols=9 Identities=44% Similarity=0.822 Sum_probs=6.6
Q ss_pred hhCCCCCCc
Q 048414 48 LFDTDGSGT 56 (87)
Q Consensus 48 ~~D~d~~G~ 56 (87)
.+|.|+||.
T Consensus 26 ~LDrD~DGi 34 (37)
T PF05901_consen 26 KLDRDGDGI 34 (37)
T ss_pred cccCCCCCC
Confidence 458888884
No 356
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain. With the exception of APC2, each member of the cullin family is modified by Nedd8 and several cullins function in Ubiquitin-dependent proteolysis, a process in which the 26S proteasome recognises and subsequently degrades a target protein tagged with K48-linked poly-ubiquitin chains. Cullins are molecular scaffolds responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Nedd8/Rub1 is a small ubiquitin-like protein, which was originally found to be conjugated to Cdc53, a cullin component of the SCF (Skp1-Cdc53/CUL1-F-box protein) E3 Ub ligase complex in Saccharomyces cerevisiae (Baker's yeast), and Nedd8 modification has now emerged as a regulatory pathway of fundamental importance for cell cycle control and for embryogenesis in metazoans. The only identified Nedd8 substrates are cullins. Neddylation results in covalent conjugation of a Nedd8 moiety onto a conserved cullin lysine residue []. ; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_B 1U6G_A 3O6B_J 3O2P_E 4A0K_A 2HYE_C ....
Probab=24.13 E-value=1.2e+02 Score=15.78 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=22.1
Q ss_pred CCcccHHHHHHH-HHHh--CCCCCHHHHHHHHHHHhC
Q 048414 54 SGTIDAKELNVA-MRAL--GFEMTEEHGIVLVCTIVE 87 (87)
Q Consensus 54 ~G~I~~~el~~~-l~~l--g~~~~~~ei~~li~~~~e 87 (87)
.+.++.++|... ...+ .+.++...+..-|+.+++
T Consensus 20 ~k~~~~~~L~~~v~~~l~~~f~~~~~~ik~~Ie~LIe 56 (68)
T PF10557_consen 20 EKKLSHDELINEVIEELKKRFPPSVSDIKKRIESLIE 56 (68)
T ss_dssp SSEEEHHHHHHHHHHHTTTTS---HHHHHHHHHHHHH
T ss_pred cCceeHHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHH
Confidence 467888888764 4445 567888888888887763
No 357
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=23.89 E-value=86 Score=18.47 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHhhhhCCCCCCcc
Q 048414 35 SQQKKQEIKEAFELFDTDGSGTI 57 (87)
Q Consensus 35 ~~~~~~~l~~~F~~~D~d~~G~I 57 (87)
+....+.+...|+ .|-|+||.|
T Consensus 87 ~s~~~~~~E~~F~-qDlNgDG~I 108 (109)
T PF07483_consen 87 NSSALEQLETSFH-QDLNGDGTI 108 (109)
T ss_pred ChHHHHHHHHHhC-ccccCCCcC
Confidence 4455677788886 599999987
No 358
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=23.79 E-value=2.2e+02 Score=18.74 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 38 KKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 38 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.+..|+.++..-..++...|+..+|...| .++...+..+++.+.
T Consensus 3 ~~~~Lk~iallg~l~~~~~IS~~eLA~~L-----~iS~~Tvsr~Lk~LE 46 (217)
T PRK14165 3 DIEALKKLALLGAVNNTVKISSSEFANHT-----GTSSKTAARILKQLE 46 (217)
T ss_pred hhHHHHHHHHHhccCCCCCcCHHHHHHHH-----CcCHHHHHHHHHHHH
Confidence 35567777777777788889999999876 356667777766653
No 359
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.72 E-value=88 Score=14.01 Aligned_cols=14 Identities=7% Similarity=-0.066 Sum_probs=6.8
Q ss_pred CCCCCHHHHHHHHH
Q 048414 70 GFEMTEEHGIVLVC 83 (87)
Q Consensus 70 g~~~~~~ei~~li~ 83 (87)
...++.++++..+.
T Consensus 14 ~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 14 ESGLSKEEIREFLE 27 (30)
T ss_dssp HTT--HHHHHHHHH
T ss_pred HcCCCHHHHHHHHH
Confidence 33456666666654
No 360
>PF13730 HTH_36: Helix-turn-helix domain
Probab=23.65 E-value=1e+02 Score=14.85 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIVE 87 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~e 87 (87)
.|+..+..-+..+....+.++.-+-+.+.|...+ | ++...|...++++.+
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~---g--~s~~Tv~~~i~~L~~ 51 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDL---G--VSRRTVQRAIKELEE 51 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH---C--cCHHHHHHHHHHHHH
Confidence 3566666666666666655554344555555544 4 457788888887653
No 361
>PF14178 YppF: YppF-like protein
Probab=23.65 E-value=85 Score=16.53 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=9.3
Q ss_pred CcccHHHHHHHHHHh
Q 048414 55 GTIDAKELNVAMRAL 69 (87)
Q Consensus 55 G~I~~~el~~~l~~l 69 (87)
|.|+..|.+.+++.+
T Consensus 35 gei~i~eYR~lvreL 49 (60)
T PF14178_consen 35 GEISINEYRNLVREL 49 (60)
T ss_pred CcccHHHHHHHHHHH
Confidence 666666666665544
No 362
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=23.56 E-value=1.3e+02 Score=16.52 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=17.9
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHGIV 80 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei~~ 80 (87)
..-+...|..+|+.+|.+...+.|+.
T Consensus 58 ~~At~~~L~~aL~~~~l~~~ad~i~~ 83 (86)
T cd08306 58 KEAKVADLIKALRDCQLNLVADLVEE 83 (86)
T ss_pred cchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 45678889999999887554444443
No 363
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=23.04 E-value=1.3e+02 Score=15.57 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHH
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMR 67 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~ 67 (87)
.++....+++..-+..|..+..-.|+.+++..-++
T Consensus 27 ~~~~~~~~el~~R~~~~~~g~~~~i~~eev~~~ir 61 (63)
T TIGR02574 27 ILTEAQKAELDRRLADYKADPSKASPWEEVRARIR 61 (63)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHH
Confidence 35667777788888888888777788887776554
No 364
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=22.95 E-value=1.5e+02 Score=16.34 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHH
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKEL 62 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el 62 (87)
.++.+..++...+|+.+ | |+.++.
T Consensus 8 Rvd~~lK~~a~~i~~~l-----G-l~~s~a 31 (83)
T TIGR02384 8 RIDEELKKEAYAVFEEL-----G-LTPSTA 31 (83)
T ss_pred eeCHHHHHHHHHHHHHh-----C-CCHHHH
Confidence 45566666777777765 4 555553
No 365
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=22.88 E-value=1.7e+02 Score=18.80 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=5.3
Q ss_pred ccHHHHHHHHHH
Q 048414 57 IDAKELNVAMRA 68 (87)
Q Consensus 57 I~~~el~~~l~~ 68 (87)
|+..||..+++.
T Consensus 72 i~k~EL~~~~~e 83 (176)
T PF06576_consen 72 ISKPELEAFLRE 83 (176)
T ss_pred CCcHHHHHHHHH
Confidence 444444444443
No 366
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=22.83 E-value=64 Score=19.29 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=15.5
Q ss_pred ccHH---HHHHHHHHhCCCCC
Q 048414 57 IDAK---ELNVAMRALGFEMT 74 (87)
Q Consensus 57 I~~~---el~~~l~~lg~~~~ 74 (87)
++.. +++.+|+.+|..+.
T Consensus 6 ~nPr~~~~mkkmMk~MGi~~~ 26 (116)
T TIGR00264 6 MNPKMLKQMQKMMKQMGMEME 26 (116)
T ss_pred CCcccHHHHHHHHHHcCCCcc
Confidence 7778 99999999998765
No 367
>cd00349 Ribosomal_L11 Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal protein L12, which is distinct from the L12 involved in the formation of the L7/L12 stalk. The C-terminal domain (CTD) of L11 is essential for binding 23S rRNA, while the N-terminal domain (NTD) contains the binding site for the antibiotics thiostrepton and micrococcin. L11 and 23S rRNA form an essential part of the GTPase-associated region (GAR). Based on differences in the relative positions of the L11 NTD and CTD during the translational cycle, L11 is proposed to play a significant role in the binding of initiation factors, elongation factors, and release factors to the ribosome. Several factors, including the class I release factors RF1 and RF2, are known to interact directly with L11. In eukaryotes, L11 has been im
Probab=22.76 E-value=1.1e+02 Score=18.43 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=20.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 53 GSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 53 ~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..|.|+.+++.++.+..-..+....++..++++
T Consensus 88 ~~g~it~~~v~eIA~~K~~dl~~~~l~~~vk~v 120 (131)
T cd00349 88 KVGNITLDQVYEIAKIKLPDLNAKTLKSAVKEI 120 (131)
T ss_pred eeeeecHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 358888888888766544345555566655554
No 368
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=22.75 E-value=1.1e+02 Score=16.42 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHHhCCC--CCHHHHHH
Q 048414 57 IDAKELNVAMRALGFE--MTEEHGIV 80 (87)
Q Consensus 57 I~~~el~~~l~~lg~~--~~~~ei~~ 80 (87)
++..++...|+..|+. .+.+++++
T Consensus 46 ~s~~eF~~~L~~~gI~~~~~~eel~~ 71 (76)
T PF03683_consen 46 MSRWEFLELLKERGIPINYDEEELEE 71 (76)
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 3567788888887765 44444443
No 369
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=22.38 E-value=70 Score=18.35 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
++++.|+.--+..+....-.|..--++.-|. .+.+++.++..+|++|.
T Consensus 9 ~eIekLqe~lk~~e~keaERigr~AlKaGL~--eieI~d~eL~~~FeeIa 56 (92)
T PF07820_consen 9 EEIEKLQEQLKQAETKEAERIGRIALKAGLG--EIEISDAELQAAFEEIA 56 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--cccCCHHHHHHHHHHHH
Confidence 4455555555544432222222222222221 24688889988888774
No 370
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=22.28 E-value=1.3e+02 Score=16.39 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHhhhhCCCCCCcccHHHHHH
Q 048414 32 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNV 64 (87)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~ 64 (87)
..+++++...++.....-...+...|+..++..
T Consensus 10 e~L~~~efk~FK~~L~~~~~~~~~~Ip~~~le~ 42 (83)
T PF02758_consen 10 EELSEEEFKRFKWLLKEPVKEGFPPIPRGELEK 42 (83)
T ss_dssp HTS-HHHHHHHHHHHHSTSSTTTCSSSHCHHHH
T ss_pred HhCCHHHHHHHHHHhcchhhcCCCCCCHHHHhh
Confidence 467888888888888755567777888766654
No 371
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=22.19 E-value=1.4e+02 Score=20.25 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=25.3
Q ss_pred HHHHHHHHHhhhhCCCCCCcccHHHHHHHHH
Q 048414 37 QKKQEIKEAFELFDTDGSGTIDAKELNVAMR 67 (87)
Q Consensus 37 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~ 67 (87)
.-..+|+.+|..+.....+.|+...|...|.
T Consensus 52 ~~~~~L~~lf~~l~~~~~~~i~p~~f~~~l~ 82 (324)
T cd02668 52 TIIDQLQLIFAQLQFGNRSVVDPSGFVKALG 82 (324)
T ss_pred hHHHHHHHHHHHHHhCCCceEChHHHHHHhC
Confidence 3467899999999877778899999887764
No 372
>PRK01736 hypothetical protein; Reviewed
Probab=22.13 E-value=2.3e+02 Score=18.18 Aligned_cols=13 Identities=8% Similarity=0.245 Sum_probs=6.4
Q ss_pred cccHHHHHHHHHH
Q 048414 56 TIDAKELNVAMRA 68 (87)
Q Consensus 56 ~I~~~el~~~l~~ 68 (87)
..+..|+.-+|..
T Consensus 22 ~~s~sElHG~L~G 34 (190)
T PRK01736 22 ALTPAEMHGLLSG 34 (190)
T ss_pred CCCHHHHHHHHHH
Confidence 3455555554443
No 373
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=22.12 E-value=1.2e+02 Score=19.93 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=15.0
Q ss_pred CcccHHHHHHHHHHhCCCCCH
Q 048414 55 GTIDAKELNVAMRALGFEMTE 75 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~ 75 (87)
.+.+.+||+.+|+.+|..+-+
T Consensus 69 ly~~~eEL~e~Lk~~g~Rf~n 89 (210)
T COG1059 69 LYLSEEELREKLKEVGYRFYN 89 (210)
T ss_pred ccCCHHHHHHHHHHhcchhcc
Confidence 345778888888888776543
No 374
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=21.93 E-value=90 Score=18.84 Aligned_cols=19 Identities=16% Similarity=0.546 Sum_probs=15.8
Q ss_pred cccHHHHHHHHHHhCCCCC
Q 048414 56 TIDAKELNVAMRALGFEMT 74 (87)
Q Consensus 56 ~I~~~el~~~l~~lg~~~~ 74 (87)
.++...|+.+++.||..+.
T Consensus 5 ~mnpr~l~k~mkqmGi~~e 23 (122)
T COG1308 5 GMNPRKLKKLMKQMGIDVE 23 (122)
T ss_pred cCCHHHHHHHHHHhCCCce
Confidence 3889999999999996554
No 375
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=21.83 E-value=93 Score=22.46 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=25.8
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
..++..|+..|...+|.|+..|--.++..-+
T Consensus 282 ~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 282 ACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 3577889999999999999999888776554
No 376
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=21.68 E-value=1.5e+02 Score=15.82 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHhhh--hC------CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 34 LSQQKKQEIKEAFEL--FD------TDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~--~D------~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
-+.++...|..++.. ++ ....+..-..++...|...|+..+..++..=++.+
T Consensus 4 Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 4 WTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp S-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 455666666666655 22 13333445677778888899999999887766554
No 377
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=21.64 E-value=1.7e+02 Score=16.68 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=14.4
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
++..||.+.+..-.. ++..++..+++.+
T Consensus 2 mtKseli~~ia~~~~-l~k~~a~~~v~~~ 29 (94)
T COG0776 2 MTKSELIDAIAEKAG-LSKKDAEEAVDAF 29 (94)
T ss_pred CCHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 345566665554322 5665555555544
No 378
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=21.59 E-value=1.3e+02 Score=15.07 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=29.7
Q ss_pred HHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 40 QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 40 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
+-+..+.+.++. -++.+.|.-+++-+...+.++.+..+|+++
T Consensus 6 d~l~eiS~lLnt----gLd~etL~ici~L~e~GVnPeaLA~vI~el 47 (48)
T PF12554_consen 6 DVLHEISDLLNT----GLDRETLSICIELCENGVNPEALAAVIKEL 47 (48)
T ss_pred HHHHHHHHHHcC----CCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 344444555444 388999998888776677888888888765
No 379
>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=21.57 E-value=72 Score=19.86 Aligned_cols=24 Identities=25% Similarity=0.601 Sum_probs=20.7
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHH
Q 048414 55 GTIDAKELNVAMRALGFEMTEEHG 78 (87)
Q Consensus 55 G~I~~~el~~~l~~lg~~~~~~ei 78 (87)
|.|+..++-..+...|++++...+
T Consensus 91 GSVt~~dIa~~l~~~g~~idk~~i 114 (148)
T COG0359 91 GSVTSKDIAEALKAAGFKLDKRKI 114 (148)
T ss_pred ccccHHHHHHHHHHcCCCcchhee
Confidence 889999999999999988876654
No 380
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=21.57 E-value=1.3e+02 Score=16.39 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=6.1
Q ss_pred HHHHHHHHHHhhhh
Q 048414 36 QQKKQEIKEAFELF 49 (87)
Q Consensus 36 ~~~~~~l~~~F~~~ 49 (87)
.+-.++...+|+.+
T Consensus 10 ~~lK~~a~~il~~~ 23 (83)
T PF04221_consen 10 EELKEEAEAILEEL 23 (83)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 33334444444443
No 381
>PLN03158 methionine aminopeptidase; Provisional
Probab=21.32 E-value=3.2e+02 Score=19.69 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 34 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
-++++++.++++ +.|...-+..++..+...+++.+|...+...
T Consensus 138 Ksp~EIe~mR~A---------~~ia~~al~~a~~~irpGvTe~EI~~~v~~~ 180 (396)
T PLN03158 138 KTPEQIQRMRET---------CRIAREVLDAAARAIKPGVTTDEIDRVVHEA 180 (396)
T ss_pred CCHHHHHHHHHH---------HHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 468888888887 4577777777777776678888888877654
No 382
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=21.32 E-value=1.6e+02 Score=16.26 Aligned_cols=23 Identities=26% Similarity=0.086 Sum_probs=10.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHH
Q 048414 60 KELNVAMRALGFEMTEEHGIVLV 82 (87)
Q Consensus 60 ~el~~~l~~lg~~~~~~ei~~li 82 (87)
.++-.+|-..|..++.+++...|
T Consensus 5 HeVL~mml~~~~~~t~~~L~~~i 27 (77)
T TIGR03853 5 HEVLNLMLASGEPYTRESLKAAI 27 (77)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHH
Confidence 34444444445555555554443
No 383
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=21.26 E-value=96 Score=17.79 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.1
Q ss_pred ccHHHHHHHHHHhCCCC
Q 048414 57 IDAKELNVAMRALGFEM 73 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~ 73 (87)
.+.+|+.++++.+|+..
T Consensus 32 P~~~ei~~a~~~LGl~~ 48 (93)
T COG1400 32 PSLEEIAEALRELGLKP 48 (93)
T ss_pred CCHHHHHHHHHHcCCCe
Confidence 56788999999999876
No 384
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=21.13 E-value=2.3e+02 Score=19.28 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
....-+...++.+|+.++++++..+++.+
T Consensus 314 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (344)
T TIGR02146 314 TGKHAIKARKEKLGVKLIEEELKRVTAKI 342 (344)
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44666778899999999999999888765
No 385
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=21.10 E-value=2.3e+02 Score=18.17 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 59 AKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 59 ~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.+|+..+|..+|+ +..+++..+..+
T Consensus 147 ~~e~~~aL~~LGy--~~~e~~~ai~~~ 171 (191)
T TIGR00084 147 RDELFEALVSLGY--KPQEIQQALKKI 171 (191)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 4678888888886 666777777665
No 386
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=21.07 E-value=1.9e+02 Score=20.72 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHHhC
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTIVE 87 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~~e 87 (87)
+..+|+.+-+..||+ ..+.|+.+|..+.|
T Consensus 319 ~p~ddvidKv~~MGf--~rDqV~a~v~rl~E 347 (358)
T PF07223_consen 319 HPYDDVIDKVASMGF--RRDQVRATVRRLTE 347 (358)
T ss_pred CcHHHHHHHHHHcCC--cHHHHHHHHHHHHh
Confidence 557788887778885 67788888887765
No 387
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.05 E-value=2.8e+02 Score=18.92 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHh
Q 048414 74 TEEHGIVLVCTIV 86 (87)
Q Consensus 74 ~~~ei~~li~~~~ 86 (87)
....++++|+.+|
T Consensus 153 De~R~keiid~~I 165 (264)
T KOG0719|consen 153 DEDRFKEIIDEAI 165 (264)
T ss_pred cHHHHHHHHHHHH
Confidence 4567788888776
No 388
>PF14337 DUF4393: Domain of unknown function (DUF4393)
Probab=20.92 E-value=1.6e+02 Score=18.27 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=10.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHH
Q 048414 64 VAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 64 ~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.+|....+..+++++++|+..+
T Consensus 21 p~le~~~~~~~~e~Lremfa~L 42 (186)
T PF14337_consen 21 PALEAASYEIDDEELREMFANL 42 (186)
T ss_pred HHHHhccCcCCcHHHHHHHHHH
Confidence 3444444444555555555444
No 389
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=20.90 E-value=1.7e+02 Score=16.27 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=13.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 57 IDAKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 57 I~~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
++..||...+.... .++..+++.+++.+
T Consensus 2 mtk~eli~~ia~~~-~~s~~~v~~vv~~~ 29 (96)
T TIGR00987 2 LTKAEMSEYLFDEL-GLSKREAKELVELF 29 (96)
T ss_pred CCHHHHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 34555555444321 34555555555544
No 390
>PF00298 Ribosomal_L11: Ribosomal protein L11, RNA binding domain; InterPro: IPR020783 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L11 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L11 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacteria, plant chloroplast, red algal chloroplast, cyanelle and archaeabacterial L11; and mammalian, plant and yeast L12 (YL15). L11 is a protein of 140 to 165 amino-acid residues. In E. coli, the C-terminal half of L11 has been shown [] to be in an extended and loosely folded conformation and is likely to be buried within the ribosomal structure.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 1VQN_I 2OTJ_I 3G6E_I 3CME_I 1YIJ_I 1YI2_I 3G4S_I 3CMA_I 3I55_I 1VQ7_I ....
Probab=20.84 E-value=1.2e+02 Score=16.17 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=8.6
Q ss_pred CCcccHHHHHHHHHH
Q 048414 54 SGTIDAKELNVAMRA 68 (87)
Q Consensus 54 ~G~I~~~el~~~l~~ 68 (87)
.|.|+.+++..+-+.
T Consensus 27 vG~it~~~i~eIAk~ 41 (69)
T PF00298_consen 27 VGTITLKQIYEIAKI 41 (69)
T ss_dssp SEEEEHHHHHHHHHH
T ss_pred eeeecHHHHHHHHHH
Confidence 456666666655443
No 391
>PF14144 DOG1: Seed dormancy control
Probab=20.60 E-value=1.7e+02 Score=16.08 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 048414 60 KELNVAMRALGFEMTEEHGIVLVCTIV 86 (87)
Q Consensus 60 ~el~~~l~~lg~~~~~~ei~~li~~~~ 86 (87)
.||+.+|..-. .++.+++.+++.++
T Consensus 4 ~eLr~al~~~~--~~~~~L~~lV~~~~ 28 (80)
T PF14144_consen 4 NELRAALQSHA--DSDDELRSLVDKVM 28 (80)
T ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence 45666655422 35666666666543
No 392
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=20.59 E-value=1.3e+02 Score=17.52 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=10.9
Q ss_pred CCcccHHHHHHHHHHhCC
Q 048414 54 SGTIDAKELNVAMRALGF 71 (87)
Q Consensus 54 ~G~I~~~el~~~l~~lg~ 71 (87)
.|.|+.++|..+|..++.
T Consensus 78 ~~kI~d~~L~~iL~~i~~ 95 (107)
T PF01984_consen 78 RGKIDDEQLKEILEQISE 95 (107)
T ss_dssp SS-B-HHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHhh
Confidence 366777777777777654
No 393
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=20.56 E-value=1.2e+02 Score=15.83 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=7.3
Q ss_pred HHHHHHHhCCCCCHHHHHHH
Q 048414 62 LNVAMRALGFEMTEEHGIVL 81 (87)
Q Consensus 62 l~~~l~~lg~~~~~~ei~~l 81 (87)
|..++..+...++.+|+..+
T Consensus 12 LEkv~e~~~~~L~~~e~~~f 31 (57)
T PF05321_consen 12 LEKVIEHNRYKLTDDELEAF 31 (57)
T ss_dssp HHHHHHHHHHHS-HHHHHHH
T ss_pred HHHHHHHhhCcCCHHHHHHH
Confidence 33333333333444444333
No 394
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=20.52 E-value=2.4e+02 Score=17.89 Aligned_cols=28 Identities=29% Similarity=0.251 Sum_probs=18.6
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHH
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAM 66 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l 66 (87)
..++.+.|..--.+.+|.|+...|..++
T Consensus 46 ~~~l~~~fg~~~~~~~g~idR~~L~~~v 73 (200)
T PRK14734 46 LAELAEAFGDDILNPDGTLDRAGLAAKA 73 (200)
T ss_pred HHHHHHHhCccccCCCChhhHHHHHHHH
Confidence 4556666654345667999998887643
No 395
>PRK10356 hypothetical protein; Provisional
Probab=20.46 E-value=3e+02 Score=18.99 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHhCCC
Q 048414 33 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE 72 (87)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg~~ 72 (87)
.++.++...+..+++.|..+-++.....++..+|..+..-
T Consensus 110 ~ls~~e~~~L~~la~~Ykv~~~~~~~~~~~~~LL~RVDiI 149 (274)
T PRK10356 110 QWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDII 149 (274)
T ss_pred CCCHHHHHHHHHHHHHcCCCcCCCcchhhHHHHHHHhCcC
Confidence 4566666777777777776645555555556666666543
No 396
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=20.40 E-value=1.7e+02 Score=16.16 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHhhhh
Q 048414 34 LSQQKKQEIKEAFELF 49 (87)
Q Consensus 34 ~~~~~~~~l~~~F~~~ 49 (87)
+.++-.++...+|+.+
T Consensus 8 iD~~lK~~A~~vl~~l 23 (80)
T PRK11235 8 VDDELKARAYAVLEKL 23 (80)
T ss_pred eCHHHHHHHHHHHHHh
Confidence 3444555555666554
No 397
>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG. Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.
Probab=20.38 E-value=2.2e+02 Score=19.57 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=8.5
Q ss_pred CCCCHHHHHHHHH
Q 048414 71 FEMTEEHGIVLVC 83 (87)
Q Consensus 71 ~~~~~~ei~~li~ 83 (87)
..++.+|+++|+.
T Consensus 261 ~~Lt~~E~~dLva 273 (291)
T TIGR03791 261 FELSEREREDLIA 273 (291)
T ss_pred CCCCHHHHHHHHH
Confidence 3567777777665
No 398
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=20.34 E-value=1.8e+02 Score=17.16 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=12.8
Q ss_pred HHHHHhCCCCCHHHHHHHHHHH
Q 048414 64 VAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 64 ~~l~~lg~~~~~~ei~~li~~~ 85 (87)
..-+..|..+++.+++..|+.+
T Consensus 91 q~A~~~gi~vsd~ev~~~i~~~ 112 (154)
T PF13624_consen 91 QEAKKLGISVSDAEVDDAIKQI 112 (154)
T ss_dssp HHHHHTT----HHHHHHHHHH-
T ss_pred HHHHHcCCCCCHHHHHHHHHHH
Confidence 3445679999999999888763
No 399
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=20.28 E-value=49 Score=23.84 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=16.6
Q ss_pred CCCCCCcccHHHHHHHHHH
Q 048414 50 DTDGSGTIDAKELNVAMRA 68 (87)
Q Consensus 50 D~d~~G~I~~~el~~~l~~ 68 (87)
+.|.+|.|+.++|+.+|+.
T Consensus 122 ~V~~~G~v~~e~L~~al~~ 140 (386)
T COG1104 122 PVDSNGLVDLEQLEEALRP 140 (386)
T ss_pred CCCCCCeEcHHHHHHhcCC
Confidence 5788999999999999863
No 400
>PRK10945 gene expression modulator; Provisional
Probab=20.27 E-value=1.7e+02 Score=16.00 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Q 048414 59 AKELNVAMRALGFEMTEEHGIVLVC 83 (87)
Q Consensus 59 ~~el~~~l~~lg~~~~~~ei~~li~ 83 (87)
.+-|..++..+...++..|+..+..
T Consensus 21 ~eTLEkvie~~~~~L~~~E~~~f~~ 45 (72)
T PRK10945 21 IDTLERVIEKNKYELSDDELAVFYS 45 (72)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHH
Confidence 3445555555555555555544443
No 401
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=20.23 E-value=2.5e+02 Score=19.07 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHhhhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHHhC
Q 048414 35 SQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL-GFEMTEEHGIVLVCTIVE 87 (87)
Q Consensus 35 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l-g~~~~~~ei~~li~~~~e 87 (87)
......-++.+|+.|..++.=.|..+=+..+=+.+ ....+++++-+.|+.++|
T Consensus 112 a~~d~qi~~~l~nefe~~~~~qv~kel~ekls~dftse~vS~ee~~~ti~k~ye 165 (266)
T KOG2616|consen 112 AGSDSQITRALMNEFERTGSVQVPKELHEKLSEDFTSERVSNEETTQTIKKIYE 165 (266)
T ss_pred hCChHHHHHHHHHHHhhCCceecCHHHHHHHHHhhhhhhcCcHHHHHHHHHHhc
Confidence 34445568888999988876666654333332222 456788888888877654
No 402
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=20.17 E-value=2.6e+02 Score=18.29 Aligned_cols=32 Identities=3% Similarity=0.024 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhCCCCCCcccHHHHHHHHHHhC
Q 048414 39 KQEIKEAFELFDTDGSGTIDAKELNVAMRALG 70 (87)
Q Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~lg 70 (87)
...+...|..+...+...+....|..++..++
T Consensus 47 ~~~l~~~~~~~~~~~~~~~~p~~~~~~l~~~~ 78 (304)
T cd02661 47 MCALEAHVERALASSGPGSAPRIFSSNLKQIS 78 (304)
T ss_pred HHHHHHHHHHHHhCCCCccChHHHHHHHHHHH
Confidence 45677778888777777888888888887653
No 403
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=20.04 E-value=2.5e+02 Score=18.00 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 048414 59 AKELNVAMRALGFEMTEEHGIVLVCTI 85 (87)
Q Consensus 59 ~~el~~~l~~lg~~~~~~ei~~li~~~ 85 (87)
.+|...+|..||+ +..+++..+..+
T Consensus 143 ~~e~~~AL~~LGy--~~~ea~~av~~~ 167 (188)
T PRK14606 143 YHESLEALVSLGY--PEKQAREAVKHV 167 (188)
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 5778888888886 667777777665
Done!