BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048416
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2G|A Chain A, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2G|B Chain B, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2G|C Chain C, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2G|D Chain D, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2U|A Chain A, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2U|B Chain B, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2U|C Chain C, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer.
pdb|2A2U|D Chain D, The Crystal Structures Of A2u-Globulin And Its Complex
With A Hyaline Droplet Inducer
Length = 181
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 406 KERYVVTYNPSKGKVYALLKDQAKSDDILKAAFHAYVLLHCINSSNG 452
+E Y+V Y + Y + D + ILK + YV+ H IN NG
Sbjct: 84 RELYLVAYKTPEDGEYFVEYDGGNTFTILKTDYDRYVMFHLINFKNG 130
>pdb|1Q47|A Chain A, Structure Of The Semaphorin 3a Receptor-Binding Module
pdb|1Q47|B Chain B, Structure Of The Semaphorin 3a Receptor-Binding Module
Length = 495
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 414 NPSKGKVYALLKDQAKSDDILKAAFHAYVLLHCINSSNGHRSLALK 459
NP KVY ++ A + A HA + C N GHRSL K
Sbjct: 212 NPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNK 257
>pdb|4GZA|G Chain G, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 538
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 414 NPSKGKVYALLKDQAKSDDILKAAFHAYVLLHCINSSNGHRSLALK 459
NP KVY ++ A + A HA + C N GHRSL K
Sbjct: 220 NPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNK 265
>pdb|4GZ8|A Chain A, Mouse Semaphorin 3a, Domains Sema-Psi-Ig
pdb|4GZ8|B Chain B, Mouse Semaphorin 3a, Domains Sema-Psi-Ig
Length = 667
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 414 NPSKGKVYALLKDQAKSDDILKAAFHAYVLLHCINSSNGHRSLALK 459
NP KVY ++ A + A HA + C N GHRSL K
Sbjct: 220 NPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNK 265
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 348 AVESFLKTGHVPSLREGNLQ-ENI-FSFPWLRDKPVVLGSRFK 388
+++SF K+GH P +GNL+ +NI FS+P ++ ++ G K
Sbjct: 370 SIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLK 412
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 348 AVESFLKTGHVPSLREGNLQ-ENI-FSFPWLRDKPVVLGSRFK 388
+++SF K+GH P +GNL+ +NI FS+P ++ ++ G K
Sbjct: 370 SIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLK 412
>pdb|2FAF|A Chain A, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAF|B Chain B, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAH|A Chain A, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|B Chain B, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|C Chain C, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|D Chain D, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2QZY|A Chain A, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
pdb|2QZY|B Chain B, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
Length = 608
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 156 ALKHFFGGAMGVFTTQTLLNSVGVSRNRATPGAVAINWILKDGAGR 201
A++ FFG G + L S G+ N P +NW L+D GR
Sbjct: 467 AMRPFFGYNAGRYLEHWL--STGLRSNARLPRLFHVNWFLRDNEGR 510
>pdb|2L9C|A Chain A, Structural Insights Into The Specificity Of Darcin, An
Atypical Major Urinary Protein
Length = 176
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 407 ERYVVTYNPSKGKVYALLKDQAKSDDILKAAFHAYVLLHCINSSNG 452
E ++V K Y++ D + + ILK + Y+++H IN +G
Sbjct: 80 EIFLVADKTEKAGEYSVTYDGSNTFTILKTDYDNYIMIHLINKKDG 125
>pdb|3KFF|A Chain A, Major Mouse Urinary Protein Iv Complexed With
2-Sec-Butyl-4,5- Dihydrothiazole
pdb|3KFG|A Chain A, Major Mouse Urinary Protein Iv Complexed With 2-Heptanone
pdb|3KFH|A Chain A, Major Mouse Urinary Protein Iv Complexed With
2-Ethylhexanol
pdb|3KFI|A Chain A, Major Mouse Urinary Protein Iv Complexed With
2,5-Dimethylpyrazine
Length = 162
Score = 28.9 bits (63), Expect = 7.3, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 407 ERYVVTYNPSKGKVYALLKDQAKSDDILKAAFHAYVLLHCINSSNG 452
E ++V K Y+++ D + ILK + Y++ H IN +G
Sbjct: 66 EIFLVADKTEKAGEYSVMYDGFNTFTILKTDYDNYIMFHLINEKDG 111
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
pdb|1V5V|B Chain B, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
Length = 401
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 272 YKAFAKGENIGDVTAKGECVGNIADLLGTGLSIMISKRN 310
YK +A GE IG+VT+ G ++ LL G+ I K
Sbjct: 330 YKVYANGEMIGEVTS-----GTLSPLLNVGIGIAFVKEE 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,057,028
Number of Sequences: 62578
Number of extensions: 520691
Number of successful extensions: 1308
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 10
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)