Query 048416
Match_columns 495
No_of_seqs 153 out of 266
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 09:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4249 Uncharacterized conser 100.0 2.2E-90 4.8E-95 706.7 25.6 361 123-495 10-379 (408)
2 PF04884 DUF647: Vitamin B6 ph 100.0 1.1E-88 2.3E-93 668.9 19.9 237 123-359 9-250 (250)
3 KOG4249 Uncharacterized conser 74.4 1 2.2E-05 48.5 0.0 72 130-205 126-198 (408)
4 PRK08633 2-acyl-glycerophospho 52.3 1.7E+02 0.0036 34.5 12.5 38 270-307 126-163 (1146)
5 PF05977 MFS_3: Transmembrane 37.7 1.7E+02 0.0037 32.6 9.2 109 200-308 54-165 (524)
6 PRK11902 ampG muropeptide tran 28.8 4.6E+02 0.0099 26.9 10.1 84 170-261 22-112 (402)
7 PRK06814 acylglycerophosphoeth 25.1 8.8E+02 0.019 28.9 12.8 107 199-308 60-169 (1140)
8 PF07690 MFS_1: Major Facilita 19.0 6.2E+02 0.013 24.4 8.4 102 199-307 44-145 (352)
9 COG3736 VirB8 Type IV secretor 18.9 3.5E+02 0.0075 27.7 6.7 48 398-445 62-113 (239)
10 smart00262 GEL Gelsolin homolo 14.0 5.7E+02 0.012 20.9 5.9 44 402-448 22-65 (90)
No 1
>KOG4249 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.2e-90 Score=706.66 Aligned_cols=361 Identities=41% Similarity=0.640 Sum_probs=331.3
Q ss_pred chHHHHHHHHHhccCCCCCCCcCCCCcchhhHHHhHhhhccchhhhhHHHHHhHhccCCCCCChhHHHHHHHHHhhhhhh
Q 048416 123 PAEELMSFIRSYVVPDGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNRATPGAVAINWILKDGAGRV 202 (495)
Q Consensus 123 ~~~~~~~~lr~~FLP~GYP~SVs~DYl~Yq~W~~lQ~f~ssi~gvLsTqAlL~gvGVG~~~Atp~AAal~WVLKDG~G~l 202 (495)
..+....+++..+.|+|||+||++||++|+.|+.+|+|+|.++|+|+||++|.++|+| .|++.||+++||+|||+|++
T Consensus 10 lpq~~~~l~~~~~~p~gfP~Svn~~yl~y~~wr~vq~f~s~~~gvl~tqSll~~~g~~--~a~~sAaai~WvlKDg~G~l 87 (408)
T KOG4249|consen 10 LPQYPGKLLSTFLPPEGFPKSVNSSYLPYLLWRAVQHFASALSGVLATQSLLAAVGAG--IAAASAAAIRWVLKDGIGDL 87 (408)
T ss_pred chhhhhhhhhhhcCCcCCCCcCCccccchhhhHHHHHHHhhhhhhhhhHHHHhhhccc--ccchhhhHhhhhhhcccchh
Confidence 3456677888899999999999999999999999999999999999999999999999 67899999999999999999
Q ss_pred HHHhhhhcCccccCccccchhhHHHHHHHhhHHHhhccccchhhHHHHHHHhHHHHHHHHhcccchhhHHhhhhcCCCcc
Q 048416 203 GKMIFARQGKKFDYDLKQLRFAGDLLMELGAGVELATAAVPHLFLPLACAANVAKNVAAVTSTSTRTPIYKAFAKGENIG 282 (495)
Q Consensus 203 g~IlFA~~G~~fD~d~K~wRl~AD~lnd~a~~LEl~TP~~P~~FL~la~lanv~Kai~gva~gaTRAai~~HFA~~~Nlg 282 (495)
|+|+|++.|++||+|||+||++||+|+|+|+++|++||+||++||+++|.+|++|+++.++..+||++|++|||+++|+|
T Consensus 88 gkll~~~~G~~fD~~pKqwR~~aD~l~~lg~g~elatp~~P~~Fl~~a~t~N~ak~va~v~~~atrs~i~~~fA~~~N~~ 167 (408)
T KOG4249|consen 88 GKLLCADEGSKFDDDPKQWRLLADLLWDLGRGLELATPLYPHFFLPLASTGNLAKYVAAVALHATRSPIYQHFAKQGNFG 167 (408)
T ss_pred hhhhhcccccccCCCHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhhHHHHHHHHHccchHhHHHHHHHhhccHH
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhHHHHHhhhhhHhhhcCCc----hHHHHHHHHHHHHHhhhhhhcccccccccchhhHHHHHHHHHhcCCC
Q 048416 283 DVTAKGECVGNIADLLGTGLSIMISKRNP----SLITTFALLSCGYVFSSYQEVKSVVLHTLNRARFSVAVESFLKTGHV 358 (495)
Q Consensus 283 DVtAK~~Sq~~va~LlG~~lgi~is~~~~----~l~~~f~lLs~~HL~~nY~aVr~V~l~TLN~~R~~il~~~fl~~G~V 358 (495)
||.||+|||+++++++|+++|+++....+ ....+|.+|+++|||+||++||+|+|+|||++|++|++++|+++|+|
T Consensus 168 dV~Akges~~~~~~laG~g~gili~~~i~~~~~~~l~~f~ils~~hly~~yq~~r~i~l~TLN~~R~~live~~l~~g~V 247 (408)
T KOG4249|consen 168 DVGAKGESQSTASNLAGLGFGILILGRIGACKPLPLVTFGILSTVHLYSNYQSLRHIQLNTLNPDRLRLIVESYLKTGQV 247 (408)
T ss_pred HHhhhhhHHHHHHHHHHhHHHHHhcCcccCCCCcceeeehhhHHHHHHHHHHhhheeeeeccCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999988654 45679999999999999999999999999999999999999999999
Q ss_pred CChhhhhhcCCcc-cCCccCCCCeeeCCccccccCC----hhhHhhhhhhhCCCCeEEEEeCCCCEEEEEeCCCCChHHH
Q 048416 359 PSLREGNLQENIF-SFPWLRDKPVVLGSRFKDAFQD----PDAYLAVEPFFEKERYVVTYNPSKGKVYALLKDQAKSDDI 433 (495)
Q Consensus 359 pSp~evn~~E~If-~~~~~~~~~I~lG~sl~~~~~~----~~~l~~l~~lf~~EkYiL~~~~~~~~v~V~Lk~~At~~Di 433 (495)
|+|.|+|++|+|| .+++.+..+|++|+++++++++ ......+...|.+|+|++. +.+++++|+||++|||+|+
T Consensus 248 Psp~e~n~~E~i~~~~~~~~~~~I~~G~~l~~a~~~~~~~~~~~~~l~~~~~~e~~~lt--~~K~~~~v~Lk~~Ats~Dv 325 (408)
T KOG4249|consen 248 PSPAEVNEEEPIFGSRPSADAWPIRLGVLLHKAVSDTLSSMSMQQLLFGYFETEKLILT--GFKGGFVVVLKEGATSVDV 325 (408)
T ss_pred CChhhhhhhcccccccccccCcCeeeccchhhhhccccccHHHHHHHHHHHHHhheeec--cCCCcEEEEEecCCChHHH
Confidence 9999999999999 6777788899999999999874 3444567788899999876 6778999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchhhhhhccccccccccchhcHHHHHHHHHHHHHHhhccccC
Q 048416 434 LKAAFHAYVLLHCINSSNGHRSLALKQHEYDNSNLMLTTADLEAHIGESCKVVSTALWGFQE 495 (495)
Q Consensus 434 LkA~~hA~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~f~~ 495 (495)
||+.||++++.+.+..+..++. .++.- ..++.+....+++||++|.++|++|++
T Consensus 326 Lr~l~q~~~l~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~l~esld~~~~~f~~fl~ 379 (408)
T KOG4249|consen 326 LRSLFQACYLYKLMGASRTKRS-------YLPAS-KKTLDDVTLRLHESLDMMRDKFIAFLS 379 (408)
T ss_pred HHHHHHHHHHHHHhcCCccccc-------ccccc-cccccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888753322 22220 144678899999999999999999975
No 2
>PF04884 DUF647: Vitamin B6 photo-protection and homoeostasis; InterPro: IPR006968 This is a family of proteins of unknown function, restricted to eukaryotes.
Probab=100.00 E-value=1.1e-88 Score=668.86 Aligned_cols=237 Identities=42% Similarity=0.710 Sum_probs=229.7
Q ss_pred chHHHHHHHHHhccCCCCCCCcCCCCcchhhHHHhHhhhccchhhhhHHHHHhHhccCCCCCChhHHHHHHHHHhhhhhh
Q 048416 123 PAEELMSFIRSYVVPDGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVGVSRNRATPGAVAINWILKDGAGRV 202 (495)
Q Consensus 123 ~~~~~~~~lr~~FLP~GYP~SVs~DYl~Yq~W~~lQ~f~ssi~gvLsTqAlL~gvGVG~~~Atp~AAal~WVLKDG~G~l 202 (495)
..+++.++++++|||+|||+||||||++||+||++|+|+|+++|+|+|||||+|+|||++.|+|+||+++||||||+||+
T Consensus 9 ~~~~~~~~l~~~fLP~GyP~SVs~dY~~y~~w~~~q~~~s~~~~vlstqalL~~vGvG~~~a~~~aAa~~wvlKDg~G~l 88 (250)
T PF04884_consen 9 RSRSLQQRLRDVFLPAGYPDSVSPDYLRYQIWDFLQAFASSISGVLSTQALLKAVGVGDASASPLAAALNWVLKDGLGML 88 (250)
T ss_pred hhhHHHHHHHHHhCCCCCCCCcCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCHHHHHHHHHHHHhHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhh-hcCccccCccccchhhHHHHHHHhhHHHhhccccchhhHHHHHHHhHHHHHHHHhcccchhhHHhhhhcCCCc
Q 048416 203 GKMIFA-RQGKKFDYDLKQLRFAGDLLMELGAGVELATAAVPHLFLPLACAANVAKNVAAVTSTSTRTPIYKAFAKGENI 281 (495)
Q Consensus 203 g~IlFA-~~G~~fD~d~K~wRl~AD~lnd~a~~LEl~TP~~P~~FL~la~lanv~Kai~gva~gaTRAai~~HFA~~~Nl 281 (495)
|+|+|| ++|++||+|||+|||+||++||+|+++||+||+||++|++++|++|++|++|+|++|+||++|++|||++||+
T Consensus 89 g~ilfa~~~g~~~D~d~K~wRl~ad~l~d~a~~lEl~tP~~P~~fl~la~~a~~~k~v~~va~gaTraai~~hfA~~~Nl 168 (250)
T PF04884_consen 89 GRILFAWRFGSSFDSDPKRWRLVADVLNDAAMILELLTPLFPQYFLPLACLANVAKAVCGVAGGATRAAITQHFARRNNL 168 (250)
T ss_pred HHHHhhhcccccccccchhHhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhCcH
Confidence 999999 5899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhHHHHHhhhhhHhhhcCCc----hHHHHHHHHHHHHHhhhhhhcccccccccchhhHHHHHHHHHhcCC
Q 048416 282 GDVTAKGECVGNIADLLGTGLSIMISKRNP----SLITTFALLSCGYVFSSYQEVKSVVLHTLNRARFSVAVESFLKTGH 357 (495)
Q Consensus 282 gDVtAK~~Sq~~va~LlG~~lgi~is~~~~----~l~~~f~lLs~~HL~~nY~aVr~V~l~TLN~~R~~il~~~fl~~G~ 357 (495)
|||+|||+|||++++|+||++|+.+++... ..|.+|++|+++||||||++||+|+|+|||++|++|++++|+++|+
T Consensus 169 aDv~AK~~sQet~~~LlG~~~Gi~l~~~~~~~~~~~~~~f~~l~~~Hl~~ny~avr~v~l~TLN~~R~~i~~~~~l~~g~ 248 (250)
T PF04884_consen 169 ADVTAKDGSQETAANLLGMLLGIFLSSLVSGSPSAVWIAFIILSALHLYCNYKAVRAVQLRTLNRQRLEILLEEFLRTGR 248 (250)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHhhcccccCcCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999876433 5788999999999999999999999999999999999999999999
Q ss_pred CC
Q 048416 358 VP 359 (495)
Q Consensus 358 Vp 359 (495)
||
T Consensus 249 V~ 250 (250)
T PF04884_consen 249 VP 250 (250)
T ss_pred CC
Confidence 98
No 3
>KOG4249 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.43 E-value=1 Score=48.46 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=63.3
Q ss_pred HHHHhccCCCCCCCcCCCCcchhhHHHhHhhhccchhhhhHHHHHhHhc-cCCCCCChhHHHHHHHHHhhhhhhHHH
Q 048416 130 FIRSYVVPDGFPDSVTPSYVPYMTWRALKHFFGGAMGVFTTQTLLNSVG-VSRNRATPGAVAINWILKDGAGRVGKM 205 (495)
Q Consensus 130 ~lr~~FLP~GYP~SVs~DYl~Yq~W~~lQ~f~ssi~gvLsTqAlL~gvG-VG~~~Atp~AAal~WVLKDG~G~lg~I 205 (495)
...++|||.+ ++.+|.+|..|-+..+..+.|-..+++|..+..|| .|.+..+..-++-+|+.++++++++..
T Consensus 126 ~~P~~Fl~~a----~t~N~ak~va~v~~~atrs~i~~~fA~~~N~~dV~Akges~~~~~~laG~g~gili~~~i~~~ 198 (408)
T KOG4249|consen 126 LYPHFFLPLA----STGNLAKYVAAVALHATRSPIYQHFAKQGNFGDVGAKGESQSTASNLAGLGFGILILGRIGAC 198 (408)
T ss_pred hcchhhhhhh----hhhhHHHHHHHHHccchHhHHHHHHHhhccHHHHhhhhhHHHHHHHHHHhHHHHHhcCcccCC
Confidence 4467899776 99999999999999999999999999999999999 777766777788899999999998854
No 4
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=52.33 E-value=1.7e+02 Score=34.50 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=23.0
Q ss_pred hHHhhhhcCCCcccccccchhhhhHHHHHhhhhhHhhh
Q 048416 270 PIYKAFAKGENIGDVTAKGECVGNIADLLGTGLSIMIS 307 (495)
Q Consensus 270 ai~~HFA~~~NlgDVtAK~~Sq~~va~LlG~~lgi~is 307 (495)
++.......++.+...+--..-..+..++|..+|.++.
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566666666666666667777776665544
No 5
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=37.68 E-value=1.7e+02 Score=32.57 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=59.6
Q ss_pred hhhHHHhhhh-cCccccC-ccccchhhHHHHHHHhhHHHhhccccchhhHHHHHHHhHHHHHHHHhcccchhhHHhhhhc
Q 048416 200 GRVGKMIFAR-QGKKFDY-DLKQLRFAGDLLMELGAGVELATAAVPHLFLPLACAANVAKNVAAVTSTSTRTPIYKAFAK 277 (495)
Q Consensus 200 G~lg~IlFA~-~G~~fD~-d~K~wRl~AD~lnd~a~~LEl~TP~~P~~FL~la~lanv~Kai~gva~gaTRAai~~HFA~ 277 (495)
..+-.++|+- -|.--|- |.|+.=+.+|++.-+..++=.+...+-..-..+..+..+.-+++..-...++.++..+.-.
T Consensus 54 ~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~ 133 (524)
T PF05977_consen 54 STLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVP 133 (524)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555552 4555565 5667777888877544332222111111111222222333333333333344455566666
Q ss_pred CCCcccccccchhhhhHHHHHhhhh-hHhhhc
Q 048416 278 GENIGDVTAKGECVGNIADLLGTGL-SIMISK 308 (495)
Q Consensus 278 ~~NlgDVtAK~~Sq~~va~LlG~~l-gi~is~ 308 (495)
++.+..-++..+.-.+++.++|-++ |+++..
T Consensus 134 ~~~L~~A~al~s~~~niar~iGPalgG~Lva~ 165 (524)
T PF05977_consen 134 KEDLPAANALNSISFNIARIIGPALGGILVAF 165 (524)
T ss_pred HhhHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 7888888888888888999999765 444443
No 6
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=28.81 E-value=4.6e+02 Score=26.90 Aligned_cols=84 Identities=10% Similarity=0.051 Sum_probs=44.9
Q ss_pred HHHHHhHhccCCCCCCh-hHHHHHHHHHhhhhhhHHHhhhhcCccccC----ccccchhhHHHHHHHhhHHHhhccccch
Q 048416 170 TQTLLNSVGVSRNRATP-GAVAINWILKDGAGRVGKMIFARQGKKFDY----DLKQLRFAGDLLMELGAGVELATAAVPH 244 (495)
Q Consensus 170 TqAlL~gvGVG~~~Atp-~AAal~WVLKDG~G~lg~IlFA~~G~~fD~----d~K~wRl~AD~lnd~a~~LEl~TP~~P~ 244 (495)
-+..|+..|+..+.-.- .+..+-| +.+.++|++.-+++. .-|+|=..++++.-+++.+=...|...+
T Consensus 22 ~~~~l~~~g~~~~~ig~~~~~~~~~--------~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~ 93 (402)
T PRK11902 22 LQAWMTVEGLDIQTIGFFSLVGQAY--------IFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAA 93 (402)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccch
Confidence 35567888886442211 2222234 455788877666653 4456888888888777665444332222
Q ss_pred h--hHHHHHHHhHHHHHHH
Q 048416 245 L--FLPLACAANVAKNVAA 261 (495)
Q Consensus 245 ~--FL~la~lanv~Kai~g 261 (495)
. ++.+.++.+++.+.-.
T Consensus 94 ~~~l~~~~~~~~~~~~~~~ 112 (402)
T PRK11902 94 LWPLAGLAVLVAFLSASQD 112 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2 2333344445544433
No 7
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=25.06 E-value=8.8e+02 Score=28.94 Aligned_cols=107 Identities=16% Similarity=-0.025 Sum_probs=55.6
Q ss_pred hhhhHHHhhh-hcCccccCccccchh-hHHHHHHHhhHHHhhccccchhhHHHHHHHhHHHHHHHH-hcccchhhHHhhh
Q 048416 199 AGRVGKMIFA-RQGKKFDYDLKQLRF-AGDLLMELGAGVELATAAVPHLFLPLACAANVAKNVAAV-TSTSTRTPIYKAF 275 (495)
Q Consensus 199 ~G~lg~IlFA-~~G~~fD~d~K~wRl-~AD~lnd~a~~LEl~TP~~P~~FL~la~lanv~Kai~gv-a~gaTRAai~~HF 275 (495)
+..++.++++ -.|.--|--.|++=+ ..+++.-+.+++=+.....+.+...+ +..++-+++.. ...+..+.+..++
T Consensus 60 ~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~--~~~~l~gi~~a~~~p~~~a~l~~~~ 137 (1140)
T PRK06814 60 VFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLF--AALFLMGIHSALFGPIKYSILPDHL 137 (1140)
T ss_pred HHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHhhchHHHHhhHhhc
Confidence 4455666665 357777777777643 22332222222212221223322221 12222233222 2344555555555
Q ss_pred hcCCCcccccccchhhhhHHHHHhhhhhHhhhc
Q 048416 276 AKGENIGDVTAKGECVGNIADLLGTGLSIMISK 308 (495)
Q Consensus 276 A~~~NlgDVtAK~~Sq~~va~LlG~~lgi~is~ 308 (495)
. .++++..++--++-..+..++|..+|-++..
T Consensus 138 ~-~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 138 N-KDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred C-ccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 5778888888887788888888877665544
No 8
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=19.00 E-value=6.2e+02 Score=24.43 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=48.6
Q ss_pred hhhhHHHhhhhcCccccCccccchhhHHHHHHHhhHHHhhccccchhhHHHHHHHhHHHHHHHHhcccchhhHHhhhhcC
Q 048416 199 AGRVGKMIFARQGKKFDYDLKQLRFAGDLLMELGAGVELATAAVPHLFLPLACAANVAKNVAAVTSTSTRTPIYKAFAKG 278 (495)
Q Consensus 199 ~G~lg~IlFA~~G~~fD~d~K~wRl~AD~lnd~a~~LEl~TP~~P~~FL~la~lanv~Kai~gva~gaTRAai~~HFA~~ 278 (495)
...++.++.++...++ ..|++=+.+.++.-++..+=..++-++ .++....+.+++.+ ....+..+.+...+-+
T Consensus 44 ~~~~~~~~~g~l~dr~--g~r~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~---~~~~~~~~~i~~~~~~- 116 (352)
T PF07690_consen 44 GSALFSPFAGYLSDRF--GRRRVLIIGLLLFALGSLLLAFASNFW-LLLIARFLLGIGSG---FFSPASNALIADWFPP- 116 (352)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHCCCT-
T ss_pred HHHHHHHHHHHHHHHc--CCeeeEeehhhhhhhHHHHhhhhhhHH-HHhhhccccccccc---cccccccccccccchh-
Confidence 3445555555544443 367777777777777733322222222 22333333333332 2233334344444433
Q ss_pred CCcccccccchhhhhHHHHHhhhhhHhhh
Q 048416 279 ENIGDVTAKGECVGNIADLLGTGLSIMIS 307 (495)
Q Consensus 279 ~NlgDVtAK~~Sq~~va~LlG~~lgi~is 307 (495)
++.+...+.-.+-..+..++|..++-.+.
T Consensus 117 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 117 EERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhccccccchhhhhhhcccchhhhhh
Confidence 56655555555555555556655554444
No 9
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=18.88 E-value=3.5e+02 Score=27.74 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=35.1
Q ss_pred hhhhhhhCCCCeEEEEeCCCCEEEEE--eCCC-CCh-HHHHHHHHHHHHHHH
Q 048416 398 LAVEPFFEKERYVVTYNPSKGKVYAL--LKDQ-AKS-DDILKAAFHAYVLLH 445 (495)
Q Consensus 398 ~~l~~lf~~EkYiL~~~~~~~~v~V~--Lk~~-At~-~DiLkA~~hA~~l~~ 445 (495)
..++++-+.|+|++.+|..+|.+.|+ ++++ .++ +.+.+.+...++..+
T Consensus 62 a~llPLK~~epy~v~vd~~tg~~~iv~~~~s~~it~deAv~~~~i~~YV~~R 113 (239)
T COG3736 62 AILLPLKKTEPYVVRVDNNTGNVAIVQRLDSSPITYDEAVVRYFISKYVRAR 113 (239)
T ss_pred HhhccccccccEEEEEcCCCceEEEEEeccccccchHHHHHHHHHHHHHHHh
Confidence 34667789999999999999988776 4555 444 347777777776654
No 10
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=14.00 E-value=5.7e+02 Score=20.86 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=36.4
Q ss_pred hhhCCCCeEEEEeCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHHHh
Q 048416 402 PFFEKERYVVTYNPSKGKVYALLKDQAKSDDILKAAFHAYVLLHCIN 448 (495)
Q Consensus 402 ~lf~~EkYiL~~~~~~~~v~V~Lk~~At~~DiLkA~~hA~~l~~~l~ 448 (495)
++..++=|||-. ...+||-...+|++.+.-+|.-+|.-+.+..+
T Consensus 22 ~L~s~d~fild~---~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~ 65 (90)
T smart00262 22 SLNSGDCYILDT---GSEIYVWVGKKSSQDEKKKAAELAVELDDTLG 65 (90)
T ss_pred HCCCCCEEEEEC---CCEEEEEECCCCCHHHHHHHHHHHHHHHHhcC
Confidence 356778888864 46899999999999999999999988876554
Done!