Query 048416
Match_columns 495
No_of_seqs 153 out of 266
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 16:07:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vik_A Villin 14T; actin-bindi 20.1 1.9E+02 0.0066 25.1 6.1 49 402-450 38-91 (126)
2 3cip_G Gelsolin; actin, dictyo 15.5 2.4E+02 0.0083 24.5 5.6 48 402-449 40-93 (128)
3 1t44_G Chimera of gelsolin dom 15.0 2.5E+02 0.0084 25.1 5.6 49 402-450 37-91 (147)
4 2ff3_A Gelsolin; protein-prote 13.9 2.7E+02 0.0091 25.1 5.6 49 402-450 59-113 (150)
5 2xtc_A F-box-like/WD repeat-co 12.3 67 0.0023 26.9 1.0 74 143-218 2-77 (90)
6 2dg7_A Putative transcriptiona 10.3 91 0.0031 26.5 1.2 21 263-283 36-56 (195)
7 2rae_A Transcriptional regulat 9.6 1E+02 0.0035 26.3 1.3 23 263-285 46-68 (207)
8 1wdg_A E2 glycoprotein; MHV, c 9.2 4.6E+02 0.016 21.9 5.0 57 439-495 37-94 (94)
9 2guk_A Hypothetical protein PG 8.1 1.9E+02 0.0065 25.5 2.4 35 322-356 17-51 (120)
10 2f07_A YVDT; helix-turn-helix, 8.0 1.2E+02 0.004 26.2 1.0 20 264-283 40-59 (197)
No 1
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=20.11 E-value=1.9e+02 Score=25.06 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=39.7
Q ss_pred hhhCCCCeEEEEeCCC-----CEEEEEeCCCCChHHHHHHHHHHHHHHHHHhcC
Q 048416 402 PFFEKERYVVTYNPSK-----GKVYALLKDQAKSDDILKAAFHAYVLLHCINSS 450 (495)
Q Consensus 402 ~lf~~EkYiL~~~~~~-----~~v~V~Lk~~At~~DiLkA~~hA~~l~~~l~~~ 450 (495)
..|.++-||+.+.-.. ..+|..+.++++.++.-.|..+|.-|...+...
T Consensus 38 ~Fy~gd~YIvl~t~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lgg~ 91 (126)
T 2vik_A 38 NFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSV 91 (126)
T ss_dssp CCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred eeCCCCeEEEEEeccCCCceeEEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCC
Confidence 4789999999764321 247888999999999999999999998877653
No 2
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=15.51 E-value=2.4e+02 Score=24.48 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=39.3
Q ss_pred hhhCCCCeEEEEeC--CCC----EEEEEeCCCCChHHHHHHHHHHHHHHHHHhc
Q 048416 402 PFFEKERYVVTYNP--SKG----KVYALLKDQAKSDDILKAAFHAYVLLHCINS 449 (495)
Q Consensus 402 ~lf~~EkYiL~~~~--~~~----~v~V~Lk~~At~~DiLkA~~hA~~l~~~l~~ 449 (495)
..|.++-||+.+.- ..+ .+|..+.++++.++.-.|.++|.-|...+..
T Consensus 40 ~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lgg 93 (128)
T 3cip_G 40 DFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNG 93 (128)
T ss_dssp EEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred eecCCCeEEEEEEEecCCCceEEEEEEEcCCCCCcchHHHHHHHHHHHHHHcCC
Confidence 47899999997643 222 4788999999999999999999999987764
No 3
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=14.97 E-value=2.5e+02 Score=25.06 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=40.0
Q ss_pred hhhCCCCeEEEEeC--CCC----EEEEEeCCCCChHHHHHHHHHHHHHHHHHhcC
Q 048416 402 PFFEKERYVVTYNP--SKG----KVYALLKDQAKSDDILKAAFHAYVLLHCINSS 450 (495)
Q Consensus 402 ~lf~~EkYiL~~~~--~~~----~v~V~Lk~~At~~DiLkA~~hA~~l~~~l~~~ 450 (495)
..|.++-||+.+.- ..+ .+|..+.++++.++.-.|.++|.-|...+...
T Consensus 37 ~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lgg~ 91 (147)
T 1t44_G 37 DFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGR 91 (147)
T ss_dssp EEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred eecCCCeEEEEEEEecCCCceEEEEEEEeCCCCChhHHHHHHHHHHHHHHHcCCC
Confidence 47899999997643 222 47889999999999999999999999887653
No 4
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=13.87 E-value=2.7e+02 Score=25.07 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=39.8
Q ss_pred hhhCCCCeEEEEeC--CCC----EEEEEeCCCCChHHHHHHHHHHHHHHHHHhcC
Q 048416 402 PFFEKERYVVTYNP--SKG----KVYALLKDQAKSDDILKAAFHAYVLLHCINSS 450 (495)
Q Consensus 402 ~lf~~EkYiL~~~~--~~~----~v~V~Lk~~At~~DiLkA~~hA~~l~~~l~~~ 450 (495)
..|.++-||+.+.- ..+ .||..+.++++.++.-.|.++|.-|...+...
T Consensus 59 ~FysgD~YIVl~ty~~~~g~~~~~IyfW~G~~ss~de~gaAA~~aveLd~~lgg~ 113 (150)
T 2ff3_A 59 DFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGR 113 (150)
T ss_dssp EEETTSEEEEEEEEECTTSSEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred eecCCCeEEEEEEEecCCCceEEEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCC
Confidence 57899999997643 222 47889999999999999999999999877653
No 5
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=12.27 E-value=67 Score=26.94 Aligned_cols=74 Identities=24% Similarity=0.345 Sum_probs=41.9
Q ss_pred CcCCCCcchhhHHHhHhh-hccchhhhhHHHHHhHhccCCCCCChhHHHHHHHHHhhhhhhHHHhhh-hcCccccCcc
Q 048416 143 SVTPSYVPYMTWRALKHF-FGGAMGVFTTQTLLNSVGVSRNRATPGAVAINWILKDGAGRVGKMIFA-RQGKKFDYDL 218 (495)
Q Consensus 143 SVs~DYl~Yq~W~~lQ~f-~ssi~gvLsTqAlL~gvGVG~~~Atp~AAal~WVLKDG~G~lg~IlFA-~~G~~fD~d~ 218 (495)
|+|+|=+.|-+|+-+|.- +...+-+|...+-...-.. +....|-.|.++ +++.|+=.+.-=.-. .-|+.+|.++
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~-~~~~VppgaLVs-llQKGL~Y~~~E~~~~~~g~~~~~~~ 77 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNI-NGTLVPPAALIS-ILQKGLQYVEAEISINEDGTVFDGRP 77 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCC-CGGGSCTTHHHH-HHHHHHHHHHHHHHTTSSCCTTCC--
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcccc-ccccCCcchHHH-HHHHHHHHHHHHHHhcCCCCccCCCC
Confidence 688889999999999853 3333344555555444433 223457777776 777765433321111 2477777763
No 6
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=10.27 E-value=91 Score=26.52 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=17.6
Q ss_pred hcccchhhHHhhhhcCCCccc
Q 048416 263 TSTSTRTPIYKAFAKGENIGD 283 (495)
Q Consensus 263 a~gaTRAai~~HFA~~~NlgD 283 (495)
.+|.+|++||.||..+++|-.
T Consensus 36 ~agvs~~t~Y~~F~sK~~Ll~ 56 (195)
T 2dg7_A 36 RAGLTRRSYFRYFPDKREVLF 56 (195)
T ss_dssp HTTCCHHHHHHHCSSTTGGGT
T ss_pred HhCCCHHHHHHHcCCHHHHHH
Confidence 377899999999998887754
No 7
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=9.65 E-value=1e+02 Score=26.30 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=18.2
Q ss_pred hcccchhhHHhhhhcCCCccccc
Q 048416 263 TSTSTRTPIYKAFAKGENIGDVT 285 (495)
Q Consensus 263 a~gaTRAai~~HFA~~~NlgDVt 285 (495)
.+|.+|++||.||..++.|-.=.
T Consensus 46 ~agvs~~t~Y~~F~sK~~Ll~~~ 68 (207)
T 2rae_A 46 ASGIARRTLFRYFPSKNAIPWGD 68 (207)
T ss_dssp HTTSCHHHHHHHCSSTTTGGGCS
T ss_pred HhCCCcchHhhhCCCHHHHHHHH
Confidence 36789999999999887775433
No 8
>1wdg_A E2 glycoprotein; MHV, coronavirus, heptad repeat, fusion core, viral entry, V protein; 2.06A {Murine hepatitis virus} SCOP: h.3.3.1 PDB: 1wdf_A
Probab=9.20 E-value=4.6e+02 Score=21.94 Aligned_cols=57 Identities=14% Similarity=0.010 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCCchhhhhhccccccccccchh-cHHHHHHHHHHHHHHhhccccC
Q 048416 439 HAYVLLHCINSSNGHRSLALKQHEYDNSNLMLTTA-DLEAHIGESCKVVSTALWGFQE 495 (495)
Q Consensus 439 hA~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~s~~~~~~~~~~f~~ 495 (495)
|+.-|.++..+-+.-.+-.--.||+.-.|.+..+. .-+..|+++.|..+++|-..|+
T Consensus 37 Qg~AL~~Lt~QL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (94)
T 1wdg_A 37 NAEALNNLLNQLSLVPRGSGGSGGSGGLNVTLLDLTYEMNRIQDAIKKLNESYINLKE 94 (94)
T ss_dssp HHHHHHHHHHHTTC-------------CCCCCCCCHHHHHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHHHHhccccccCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 45555555544332221112224444556555553 3478999999999999988775
No 9
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=8.12 E-value=1.9e+02 Score=25.50 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=31.2
Q ss_pred HHHHhhhhhhcccccccccchhhHHHHHHHHHhcC
Q 048416 322 CGYVFSSYQEVKSVVLHTLNRARFSVAVESFLKTG 356 (495)
Q Consensus 322 ~~HL~~nY~aVr~V~l~TLN~~R~~il~~~fl~~G 356 (495)
.-|+|-=-++||.+.|-|+|+.=...+++..-+.|
T Consensus 17 ~hhIYEy~KGvR~LvL~T~~~~~~~~~~~rL~~~~ 51 (120)
T 2guk_A 17 MHHIYEFEKGVRSMVLATLANDDIPYAEERLRSRQ 51 (120)
T ss_dssp HHHHHHHHHTSCSEEEEEEEGGGHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHhcCHhhHHHHHHHHHhCC
Confidence 35889888999999999999999999999887766
No 10
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=8.01 E-value=1.2e+02 Score=26.19 Aligned_cols=20 Identities=10% Similarity=0.209 Sum_probs=16.4
Q ss_pred cccchhhHHhhhhcCCCccc
Q 048416 264 STSTRTPIYKAFAKGENIGD 283 (495)
Q Consensus 264 ~gaTRAai~~HFA~~~NlgD 283 (495)
+|.+|++||.||..++.|-.
T Consensus 40 Agvskgt~Y~yF~sKe~L~~ 59 (197)
T 2f07_A 40 AGTAQGTFYLYFSSKNALIP 59 (197)
T ss_dssp HTSCHHHHHHHCSSSTTHHH
T ss_pred hCCCchHHHHhCCCHHHHHH
Confidence 67899999999988776643
Done!