Query 048416
Match_columns 495
No_of_seqs 153 out of 266
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 16:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048416.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048416hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d7ya3 d.87.1.1 (A:309-405) N 17.6 38 0.0028 25.9 2.9 36 332-367 52-87 (97)
2 d1j72a1 d.109.1.1 (A:11-124) M 15.8 1.5E+02 0.011 23.3 6.4 49 402-450 31-81 (114)
3 d1vi0a1 a.4.1.9 (A:6-77) Hypot 13.4 15 0.0011 26.1 -0.5 19 263-281 30-48 (72)
4 d1q1ra3 d.87.1.1 (A:320-422) P 12.6 60 0.0043 25.0 2.9 35 333-367 51-85 (103)
5 d2vika_ d.109.1.1 (A:) Villin, 11.8 2E+02 0.015 22.8 6.1 50 401-450 37-91 (126)
6 d2fbqa1 a.4.1.9 (A:2-80) Trans 11.4 20 0.0015 25.9 -0.4 18 264-281 34-51 (79)
7 d3cipg1 d.109.1.1 (G:2-125) Ge 10.2 2.1E+02 0.015 22.6 5.6 48 402-449 36-89 (124)
8 d3etja2 c.30.1.1 (A:1-78) N5-c 9.5 49 0.0036 24.8 1.2 16 198-213 8-26 (78)
9 d1v7ba1 a.4.1.9 (A:1-74) Trans 9.2 26 0.0019 25.0 -0.5 19 263-281 33-51 (74)
10 d3c07a1 a.4.1.9 (A:15-89) Puta 8.7 28 0.002 24.7 -0.5 18 264-281 35-52 (75)
No 1
>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
Probab=17.61 E-value=38 Score=25.86 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=30.8
Q ss_pred cccccccccchhhHHHHHHHHHhcCCCCChhhhhhc
Q 048416 332 VKSVVLHTLNRARFSVAVESFLKTGHVPSLREGNLQ 367 (495)
Q Consensus 332 Vr~V~l~TLN~~R~~il~~~fl~~G~VpSp~evn~~ 367 (495)
=|.+-.-++|+.|-..+.+..++.|..|+++++...
T Consensus 52 g~lvgv~~vn~~~~~~~~rrli~~~~~~~~~~LaD~ 87 (97)
T d1d7ya3 52 GRIVGATCVNNARDFAPLRRLLAVGAKPDRAALADP 87 (97)
T ss_dssp TEEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHHSS
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHCCCCCCHHHhcCC
Confidence 355666889999999999999999999999988753
No 2
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.85 E-value=1.5e+02 Score=23.35 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=39.6
Q ss_pred hhhCCCCeEEEEeCC--CCEEEEEeCCCCChHHHHHHHHHHHHHHHHHhcC
Q 048416 402 PFFEKERYVVTYNPS--KGKVYALLKDQAKSDDILKAAFHAYVLLHCINSS 450 (495)
Q Consensus 402 ~lf~~EkYiL~~~~~--~~~v~V~Lk~~At~~DiLkA~~hA~~l~~~l~~~ 450 (495)
..|.++-||+.+.-. ...+|..+-.+++.+|.-.|.+++.-|...+...
T Consensus 31 ~Fy~gd~Yivl~~y~~~~~~i~fW~G~~ss~de~g~aa~~~veLd~~l~g~ 81 (114)
T d1j72a1 31 VFFSGDSYLVLHNGPEEVSHLHLWIGQQSSRDEQGACAVLAVQLDDYLGGR 81 (114)
T ss_dssp EEETTSEEEEEEECSSSCEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred eeeCCCEEEEEEecCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 478899999987532 3357888999999999999999999998777643
No 3
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=13.36 E-value=15 Score=26.14 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.4
Q ss_pred hcccchhhHHhhhhcCCCc
Q 048416 263 TSTSTRTPIYKAFAKGENI 281 (495)
Q Consensus 263 a~gaTRAai~~HFA~~~Nl 281 (495)
.+|.+|++|+.||..+++|
T Consensus 30 ~agvs~~~~y~~F~~K~~L 48 (72)
T d1vi0a1 30 QAGVADGTIYLYFKNKEDI 48 (72)
T ss_dssp HHTSCHHHHHHHCSSHHHH
T ss_pred HHCcCHHHHHHHCcCHHHH
Confidence 3678999999999876655
No 4
>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}
Probab=12.61 E-value=60 Score=25.01 Aligned_cols=35 Identities=9% Similarity=-0.048 Sum_probs=30.3
Q ss_pred ccccccccchhhHHHHHHHHHhcCCCCChhhhhhc
Q 048416 333 KSVVLHTLNRARFSVAVESFLKTGHVPSLREGNLQ 367 (495)
Q Consensus 333 r~V~l~TLN~~R~~il~~~fl~~G~VpSp~evn~~ 367 (495)
+.+..-++|+.|-..+.+..++.|..|++++....
T Consensus 51 ~lvav~~vn~~~~~~~~r~li~~~~~~~~~~L~D~ 85 (103)
T d1q1ra3 51 RVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGDE 85 (103)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHTCT
T ss_pred eEEEEEEeCCHHHHHHHHHHHHCCCCcCHHHhcCC
Confidence 45667899999999999999999999999887653
No 5
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=11.76 E-value=2e+02 Score=22.83 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=38.7
Q ss_pred hhhhCCCCeEEEEeCC--C---CEEEEEeCCCCChHHHHHHHHHHHHHHHHHhcC
Q 048416 401 EPFFEKERYVVTYNPS--K---GKVYALLKDQAKSDDILKAAFHAYVLLHCINSS 450 (495)
Q Consensus 401 ~~lf~~EkYiL~~~~~--~---~~v~V~Lk~~At~~DiLkA~~hA~~l~~~l~~~ 450 (495)
-..|.++-||+.+.-. . ..+|..+..+++.+|.--|.++|.-|...+...
T Consensus 37 G~Fysgd~Yivl~ty~~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~eLd~~l~g~ 91 (126)
T d2vika_ 37 GNFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSV 91 (126)
T ss_dssp TCCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CEEeCCCEEEEEEEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 3478999999976322 1 257888899999999999999998888766653
No 6
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.37 E-value=20 Score=25.93 Aligned_cols=18 Identities=6% Similarity=0.135 Sum_probs=14.8
Q ss_pred cccchhhHHhhhhcCCCc
Q 048416 264 STSTRTPIYKAFAKGENI 281 (495)
Q Consensus 264 ~gaTRAai~~HFA~~~Nl 281 (495)
+|.+|++|+.||..+++|
T Consensus 34 agvs~~s~y~~F~~K~~l 51 (79)
T d2fbqa1 34 AGVNLAAVNYHFGSKKAL 51 (79)
T ss_dssp HTSCHHHHHHHTCSHHHH
T ss_pred HCcChhHHHHHCcCHHHH
Confidence 678999999999876554
No 7
>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.15 E-value=2.1e+02 Score=22.63 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=37.8
Q ss_pred hhhCCCCeEEEEeC--CCC----EEEEEeCCCCChHHHHHHHHHHHHHHHHHhc
Q 048416 402 PFFEKERYVVTYNP--SKG----KVYALLKDQAKSDDILKAAFHAYVLLHCINS 449 (495)
Q Consensus 402 ~lf~~EkYiL~~~~--~~~----~v~V~Lk~~At~~DiLkA~~hA~~l~~~l~~ 449 (495)
..|+++-||+.+.- .++ .+|.-+-.+++.+|.-.|.++|.-|...+..
T Consensus 36 ~Fy~gd~YIil~ty~~~~g~~~~~iy~W~G~~ss~~e~~~aa~~aveLd~~l~g 89 (124)
T d3cipg1 36 DFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNG 89 (124)
T ss_dssp EEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeCCCEEEEEEEEEcCCCCEeEEEEEEECCCCChhHHHHHHHHHHHHHHHcCC
Confidence 47899999996532 222 4678899999999999999999888877654
No 8
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}
Probab=9.48 E-value=49 Score=24.82 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=12.5
Q ss_pred hhhhhHHHhh--h-hcCcc
Q 048416 198 GAGRVGKMIF--A-RQGKK 213 (495)
Q Consensus 198 G~G~lg~IlF--A-~~G~~ 213 (495)
|-|+||+|+. | ++|-+
T Consensus 8 G~GQLgrMl~~Aa~~LG~~ 26 (78)
T d3etja2 8 GNGQLGRMLRQAGEPLGIA 26 (78)
T ss_dssp BCSHHHHHHHHHHGGGTEE
T ss_pred cCCHHHHHHHHHHHHcCCE
Confidence 7899999998 3 57743
No 9
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=9.23 E-value=26 Score=25.03 Aligned_cols=19 Identities=5% Similarity=0.204 Sum_probs=15.1
Q ss_pred hcccchhhHHhhhhcCCCc
Q 048416 263 TSTSTRTPIYKAFAKGENI 281 (495)
Q Consensus 263 a~gaTRAai~~HFA~~~Nl 281 (495)
.+|.++++|+.||..+++|
T Consensus 33 ~agvs~~t~Y~~F~~K~~L 51 (74)
T d1v7ba1 33 ATGLSKSGLIYHFPSRHAL 51 (74)
T ss_dssp HHCSCHHHHHHHCSSHHHH
T ss_pred HhCcCcchHhhhCCCHHHH
Confidence 3678899999999876554
No 10
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.72 E-value=28 Score=24.73 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=14.6
Q ss_pred cccchhhHHhhhhcCCCc
Q 048416 264 STSTRTPIYKAFAKGENI 281 (495)
Q Consensus 264 ~gaTRAai~~HFA~~~Nl 281 (495)
+|.+|++|+.||...++|
T Consensus 35 agvs~~~~y~~F~~k~~L 52 (75)
T d3c07a1 35 AGVSVGNAYYYFAGKEHL 52 (75)
T ss_dssp HTSCHHHHHHHCSSHHHH
T ss_pred HCcCHHHHHHHCcCHHHH
Confidence 578999999999865544
Done!