Query 048417
Match_columns 453
No_of_seqs 185 out of 2752
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 09:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.2E-42 6.9E-47 366.7 26.4 430 2-438 153-610 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.3E-41 2.8E-46 362.1 26.6 428 2-437 131-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.1E-35 4.5E-40 271.3 7.2 365 41-438 82-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 7E-35 1.5E-39 267.9 5.9 367 13-413 78-452 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.2E-34 2.5E-39 255.2 -5.2 411 9-436 41-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 5.1E-33 1.1E-37 257.8 -5.1 370 12-439 6-379 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 2.8E-31 6.1E-36 234.0 -5.4 392 5-413 60-541 (565)
8 KOG0444 Cytoskeletal regulator 100.0 2.9E-30 6.3E-35 239.6 -1.6 346 4-413 23-375 (1255)
9 KOG0618 Serine/threonine phosp 99.9 1.6E-28 3.5E-33 237.5 -3.7 402 10-434 42-487 (1081)
10 KOG0618 Serine/threonine phosp 99.9 5.8E-27 1.3E-31 226.8 -1.6 390 2-412 57-488 (1081)
11 PLN03210 Resistant to P. syrin 99.9 8.6E-22 1.9E-26 210.8 26.0 340 29-411 550-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.9E-21 4E-26 208.2 25.4 340 7-389 552-906 (1153)
13 PRK15387 E3 ubiquitin-protein 99.8 8.3E-19 1.8E-23 175.2 17.1 260 63-416 202-461 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 1.1E-18 2.3E-23 174.5 16.5 260 86-439 202-461 (788)
15 KOG4237 Extracellular matrix p 99.8 4.6E-20 9.9E-25 163.2 1.8 286 134-433 67-356 (498)
16 KOG4237 Extracellular matrix p 99.8 3.8E-20 8.3E-25 163.7 -1.4 301 94-414 55-360 (498)
17 PRK15370 E3 ubiquitin-protein 99.7 1.1E-17 2.4E-22 168.3 11.4 204 135-413 221-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 3.6E-17 7.8E-22 164.5 13.3 247 62-389 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-18 2.7E-23 162.6 2.6 65 107-171 24-94 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-17 2.5E-22 156.1 6.1 271 17-288 2-317 (319)
21 KOG0617 Ras suppressor protein 99.5 3E-16 6.5E-21 123.6 -3.9 161 228-419 31-192 (264)
22 KOG0617 Ras suppressor protein 99.5 3.6E-16 7.8E-21 123.2 -4.6 156 33-217 29-185 (264)
23 KOG3207 Beta-tubulin folding c 99.3 1.1E-12 2.4E-17 118.4 0.8 235 110-365 97-339 (505)
24 KOG1909 Ran GTPase-activating 99.2 1.5E-12 3.2E-17 114.5 0.2 245 9-266 26-310 (382)
25 KOG3207 Beta-tubulin folding c 99.2 3.8E-12 8.3E-17 115.0 2.4 180 35-218 119-314 (505)
26 KOG1909 Ran GTPase-activating 99.2 1.9E-12 4.2E-17 113.8 -0.1 145 106-267 30-198 (382)
27 PLN03150 hypothetical protein; 99.2 4.3E-11 9.3E-16 120.4 8.6 117 329-445 419-538 (623)
28 PF14580 LRR_9: Leucine-rich r 99.1 2.2E-11 4.7E-16 100.5 3.3 109 326-439 17-129 (175)
29 KOG4658 Apoptotic ATPase [Sign 99.1 2.3E-10 5.1E-15 117.7 8.1 84 350-433 768-856 (889)
30 KOG0532 Leucine-rich repeat (L 99.1 5.7E-12 1.2E-16 117.5 -4.3 105 158-267 75-179 (722)
31 KOG1259 Nischarin, modulator o 99.0 7.9E-11 1.7E-15 101.7 1.8 86 327-415 328-414 (490)
32 COG4886 Leucine-rich repeat (L 99.0 1.1E-09 2.4E-14 105.3 8.6 101 186-290 97-198 (394)
33 PF14580 LRR_9: Leucine-rich r 99.0 4.7E-10 1E-14 92.6 4.9 125 133-261 18-147 (175)
34 KOG0532 Leucine-rich repeat (L 99.0 2.6E-11 5.7E-16 113.2 -3.1 193 181-433 74-270 (722)
35 COG4886 Leucine-rich repeat (L 99.0 1.3E-09 2.8E-14 104.7 7.2 193 41-245 97-292 (394)
36 KOG1259 Nischarin, modulator o 98.9 1.3E-10 2.9E-15 100.3 -0.2 128 83-219 282-413 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1E-09 2.2E-14 113.1 5.6 130 321-452 710-847 (889)
38 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.3E-14 74.4 3.2 61 352-412 1-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.8 3.4E-09 7.4E-14 71.8 3.6 61 328-388 1-61 (61)
40 PLN03150 hypothetical protein; 98.8 1.5E-08 3.3E-13 102.1 8.9 95 324-418 438-533 (623)
41 KOG0531 Protein phosphatase 1, 98.8 1.3E-09 2.8E-14 105.0 0.5 218 179-435 92-317 (414)
42 KOG2982 Uncharacterized conser 98.7 7.4E-09 1.6E-13 89.6 2.5 206 36-244 44-263 (418)
43 KOG1859 Leucine-rich repeat pr 98.7 1.4E-09 3.1E-14 104.7 -2.3 111 326-442 185-298 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.7 8E-10 1.7E-14 95.4 -4.3 177 38-216 186-374 (419)
45 KOG2120 SCF ubiquitin ligase, 98.5 7.3E-09 1.6E-13 89.6 -3.5 150 63-215 186-348 (419)
46 KOG0531 Protein phosphatase 1, 98.4 4.4E-08 9.6E-13 94.4 -0.2 219 180-436 70-290 (414)
47 COG5238 RNA1 Ran GTPase-activa 98.3 1.5E-07 3.2E-12 80.6 1.1 95 130-225 153-262 (388)
48 KOG1859 Leucine-rich repeat pr 98.3 3.6E-08 7.7E-13 95.3 -4.6 127 107-242 165-291 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.3 1.6E-06 3.4E-11 74.5 5.7 189 105-294 91-319 (388)
50 KOG2982 Uncharacterized conser 98.2 1.5E-06 3.2E-11 75.6 3.9 225 159-408 46-287 (418)
51 KOG4341 F-box protein containi 98.2 7.5E-08 1.6E-12 87.3 -4.7 293 63-408 139-460 (483)
52 PF12799 LRR_4: Leucine Rich r 98.1 2.1E-06 4.6E-11 53.1 2.4 37 376-413 1-37 (44)
53 KOG1644 U2-associated snRNP A' 98.1 4.3E-06 9.2E-11 68.8 4.7 85 352-438 42-128 (233)
54 KOG3665 ZYG-1-like serine/thre 98.0 4.9E-06 1.1E-10 84.1 3.4 148 86-238 123-283 (699)
55 KOG4579 Leucine-rich repeat (L 98.0 3.2E-07 7E-12 70.3 -3.8 84 328-414 53-137 (177)
56 KOG3665 ZYG-1-like serine/thre 97.9 1.2E-05 2.6E-10 81.4 4.5 134 13-147 122-263 (699)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.3E-10 49.3 3.0 37 352-389 1-37 (44)
58 KOG4579 Leucine-rich repeat (L 97.8 2.5E-06 5.5E-11 65.5 -1.1 84 132-217 51-135 (177)
59 KOG4341 F-box protein containi 97.8 1.3E-06 2.9E-11 79.4 -3.9 266 158-449 138-430 (483)
60 KOG1644 U2-associated snRNP A' 97.7 6.8E-05 1.5E-09 61.9 5.7 81 15-98 44-126 (233)
61 PRK15386 type III secretion pr 97.7 0.00015 3.2E-09 67.8 8.3 54 181-240 51-104 (426)
62 PRK15386 type III secretion pr 97.6 0.00031 6.6E-09 65.8 8.8 54 12-72 51-104 (426)
63 KOG2739 Leucine-rich acidic nu 97.6 4.8E-05 1E-09 65.4 3.2 93 3-98 33-129 (260)
64 KOG2123 Uncharacterized conser 97.3 5.6E-06 1.2E-10 71.4 -6.2 101 326-430 17-124 (388)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00065 1.4E-08 58.6 3.2 89 324-414 39-130 (260)
66 PF13306 LRR_5: Leucine rich r 96.9 0.0042 9.2E-08 49.0 7.5 84 8-94 7-90 (129)
67 KOG2123 Uncharacterized conser 96.7 5.8E-05 1.3E-09 65.4 -5.2 86 350-440 17-105 (388)
68 KOG1947 Leucine rich repeat pr 96.6 0.00048 1E-08 68.2 -0.1 109 35-146 186-307 (482)
69 PF13306 LRR_5: Leucine rich r 96.6 0.0057 1.2E-07 48.2 6.1 57 132-190 10-66 (129)
70 KOG1947 Leucine rich repeat pr 96.5 0.00029 6.3E-09 69.7 -2.2 65 202-266 240-307 (482)
71 PF00560 LRR_1: Leucine Rich R 94.5 0.015 3.2E-07 29.7 0.6 11 403-413 3-13 (22)
72 KOG3864 Uncharacterized conser 94.5 0.0053 1.2E-07 51.0 -1.7 82 14-95 102-186 (221)
73 KOG4308 LRR-containing protein 94.4 0.00056 1.2E-08 66.4 -8.8 114 107-220 173-305 (478)
74 PF00560 LRR_1: Leucine Rich R 94.3 0.018 4E-07 29.4 0.6 17 39-56 2-18 (22)
75 KOG4308 LRR-containing protein 94.3 0.00086 1.9E-08 65.1 -7.9 40 107-146 145-184 (478)
76 PF13504 LRR_7: Leucine rich r 93.5 0.05 1.1E-06 25.7 1.3 13 401-413 2-14 (17)
77 KOG3864 Uncharacterized conser 91.8 0.014 2.9E-07 48.7 -3.2 82 330-411 103-187 (221)
78 KOG0473 Leucine-rich repeat pr 91.6 0.0035 7.7E-08 53.2 -6.9 90 345-436 35-124 (326)
79 KOG0473 Leucine-rich repeat pr 88.4 0.018 3.9E-07 49.0 -5.2 87 9-98 38-124 (326)
80 smart00369 LRR_TYP Leucine-ric 87.6 0.49 1.1E-05 25.1 1.9 13 377-389 3-15 (26)
81 smart00370 LRR Leucine-rich re 87.6 0.49 1.1E-05 25.1 1.9 13 377-389 3-15 (26)
82 PF13516 LRR_6: Leucine Rich r 83.1 0.7 1.5E-05 23.9 1.1 15 37-51 2-16 (24)
83 smart00364 LRR_BAC Leucine-ric 81.9 0.99 2.2E-05 24.0 1.3 19 400-419 2-20 (26)
84 smart00365 LRR_SD22 Leucine-ri 80.1 1.7 3.8E-05 23.1 1.9 14 400-413 2-15 (26)
85 smart00368 LRR_RI Leucine rich 78.5 2.1 4.6E-05 23.2 2.0 21 107-127 3-23 (28)
86 KOG4242 Predicted myosin-I-bin 73.8 58 0.0013 31.6 11.1 61 353-413 414-481 (553)
87 KOG3763 mRNA export factor TAP 71.4 1.7 3.7E-05 42.3 0.8 64 350-415 216-285 (585)
88 smart00367 LRR_CC Leucine-rich 55.5 7.2 0.00016 20.5 1.1 12 13-24 2-13 (26)
89 KOG3763 mRNA export factor TAP 48.9 8.9 0.00019 37.6 1.3 80 325-406 215-307 (585)
90 TIGR00864 PCC polycystin catio 25.3 44 0.00095 40.0 2.1 31 359-389 2-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-42 Score=366.65 Aligned_cols=430 Identities=30% Similarity=0.403 Sum_probs=279.3
Q ss_pred CcccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcC
Q 048417 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPN 80 (453)
Q Consensus 2 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~ 80 (453)
++.+|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+ .+..
T Consensus 153 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChh
Confidence 46678888889999999999998887888888889999999999888877788776 778888999998888874 5556
Q ss_pred ccCCCCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC
Q 048417 81 LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157 (453)
Q Consensus 81 l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 157 (453)
+.++++|++|++++|.+.+..+.. +++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..|..+..+
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI----FSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhH----hhccCcCEEECcCCeeccCCChhHcCC
Confidence 778888888888888877655543 4578888888887765444333 357778888888877777777777777
Q ss_pred CcccEEEcccCccCCCCCccccccccccEEEccCCccccc-cccccccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT-IHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
++|++|++++|.+.+..|..+..+++|+.|++++|.+.+. +..+..+++|+.|++++|.+.+..+..+. .+++++.++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L~ 386 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKLI 386 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEEE
Confidence 7788888877777777777777777777777777777643 34566667777777777776665555443 345566666
Q ss_pred ecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccch-------------
Q 048417 237 LRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAP------------- 303 (453)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~------------- 303 (453)
+.+|.+.+..|..+..+++|+.|++++|.+.+.+|..+..++.|+.++++++.............+.
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 6666665555555666666666666666665555555555555555555555433211110000000
Q ss_pred ---------hhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccC
Q 048417 304 ---------LIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGT 374 (453)
Q Consensus 304 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 374 (453)
.+.. .......+.+.....+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..
T Consensus 467 ~~p~~~~~~~L~~-L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 545 (968)
T PLN00113 467 GLPDSFGSKRLEN-LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545 (968)
T ss_pred ecCcccccccceE-EECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC
Confidence 0000 000001111222233445556666666666665556666666666666666666666666666666
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC-ccCC
Q 048417 375 MRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRA 438 (453)
Q Consensus 375 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~~ 438 (453)
+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|....+..+....+.+|+ +|+.
T Consensus 546 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence 666666666666666666666666666666666666666666655555555555666666 5553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-41 Score=362.05 Aligned_cols=428 Identities=29% Similarity=0.401 Sum_probs=352.1
Q ss_pred CcccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcC
Q 048417 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPN 80 (453)
Q Consensus 2 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~ 80 (453)
+|.+|. ..+++|++|+|++|.+++..|..++.+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+ .+..
T Consensus 131 ~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~ 207 (968)
T PLN00113 131 TGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRE 207 (968)
T ss_pred ccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChH
Confidence 344554 458899999999999988889999999999999999999988899887 889999999999999875 5667
Q ss_pred ccCCCCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC
Q 048417 81 LTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157 (453)
Q Consensus 81 l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 157 (453)
+.++.+|+.|++++|.+.+..+.. +++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+
T Consensus 208 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh----hHhCCCCCCEEECcCCeeeccCchhHhhc
Confidence 889999999999999998766543 67899999999998765444 44579999999999999998899999999
Q ss_pred CcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.. ..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~ 362 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLD 362 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEEE
Confidence 99999999999999888988999999999999999987654 668889999999999999988777765 4689999999
Q ss_pred ecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhh---------hh
Q 048417 237 LRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLI---------AT 307 (453)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~---------~~ 307 (453)
+++|.+.+..|..+..+.+|+.+++++|.+.+.+|..+..+++|+.+++.+|.............+... ..
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 442 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccC
Confidence 999999988999999999999999999999999999999999999999999875432211111110000 00
Q ss_pred hhhhHHHHhcCC------------cchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCC
Q 048417 308 LLEDAFVVMKGR------------EAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTM 375 (453)
Q Consensus 308 ~~~~~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l 375 (453)
........++.. ........++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|+.+..+
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 522 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCc
Confidence 000000000000 00011123578888888888887888888889999999999999988889889999
Q ss_pred CCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccC
Q 048417 376 RSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCR 437 (453)
Q Consensus 376 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~ 437 (453)
++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|++.+
T Consensus 523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999999999999999999999999999999877764 778899999999998654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-35 Score=271.30 Aligned_cols=365 Identities=20% Similarity=0.204 Sum_probs=186.9
Q ss_pred EEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccc---cccCcEEECcCCC
Q 048417 41 YLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNS 117 (453)
Q Consensus 41 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~ 117 (453)
+|++++|++ ..+.-.+|.++++|+++.+..|.++.++.......+|+.|++.+|.+.+.-... ++.|+.||++.|.
T Consensus 82 ~LdlsnNkl-~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 82 TLDLSNNKL-SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeecccccc-ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 355555555 444444445555555555555555554444444445555555555554433322 3455555555555
Q ss_pred CCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccc
Q 048417 118 ISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT 197 (453)
Q Consensus 118 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 197 (453)
++......++ .-.++++|+|++|+|+......|..+.+|.+|.|++|.++...+..|.++++|+.|++..|.+..+
T Consensus 161 is~i~~~sfp----~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 161 ISEIPKPSFP----AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhcccCCCCC----CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 5432222222 234555555555555544444455555555555555555544444454555555555555555444
Q ss_pred c-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccc
Q 048417 198 I-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN 276 (453)
Q Consensus 198 ~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 276 (453)
. -.|.++++|+.+.+..|.+.. ..+..|-.+.++++|++..|.+...-..++..+.+|+.|++++|.+...-+..|.-
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~k-L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISK-LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCccc-ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 2 445555555555555555533 33333334555555555555554444444555555555555555555455555555
Q ss_pred ccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcE
Q 048417 277 LRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQS 356 (453)
Q Consensus 277 ~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 356 (453)
+++|+.|+++.+.+..+... .+..+..|++|++++|+++-.....|..+++|++
T Consensus 316 tqkL~~LdLs~N~i~~l~~~--------------------------sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEG--------------------------SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cccceeEeccccccccCChh--------------------------HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 55555555555544333332 1122444566666666555333444555566666
Q ss_pred EEcCCccCCCCC---CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCC
Q 048417 357 VNLSNNFFTGRI---PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSG 432 (453)
Q Consensus 357 L~l~~n~~~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~ 432 (453)
|+|++|.+...+ ...|.++++|++|++.+|++.++....|..++.|++|+|.+|.|...-++. .+| .|+++.++.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 666666544222 233455666666666666665444455666666666666666655443433 444 555555543
Q ss_pred CC-ccCC
Q 048417 433 ND-LCRA 438 (453)
Q Consensus 433 n~-l~~~ 438 (453)
-. +|+.
T Consensus 449 ssflCDC 455 (873)
T KOG4194|consen 449 SSFLCDC 455 (873)
T ss_pred cceEEec
Confidence 33 4444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7e-35 Score=267.88 Aligned_cols=367 Identities=19% Similarity=0.210 Sum_probs=313.2
Q ss_pred CcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcCccCCCCCcEEE
Q 048417 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPNLTNAAQLEVLS 91 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~~L~ 91 (453)
+..+.|++++|.+...-+..|.++++|+.+++..|.+ ..+|..- +...+|+.|+|.+|.|+. ..+.+..++.||.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 3567899999999887778899999999999999999 8888764 556779999999999987 445688889999999
Q ss_pred ccCCccccccccccc---cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccC
Q 048417 92 LGSNSFSIALPLISS---YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNN 168 (453)
Q Consensus 92 l~~~~~~~~~~~~~~---~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 168 (453)
++.|.++......++ .+++|++++|.++....+. |.++..|..|.|++|+++..-+..|.++++|+.|+|..|
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~----F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH----FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccccccccccc----ccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 999999988777765 6999999999998655443 346889999999999999555566777999999999999
Q ss_pred ccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCc
Q 048417 169 KFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP 247 (453)
Q Consensus 169 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 247 (453)
.+...---.|.++++|+.|.+..|.+.... ..|.++.++++|+++.|.+......+++ ++..|++|++++|.+....+
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~ 310 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHI 310 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeec
Confidence 987332345889999999999999998776 6788999999999999999776677776 78999999999999999989
Q ss_pred hhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhc
Q 048417 248 KELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTL 327 (453)
Q Consensus 248 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (453)
..+..+++|++|++++|.++...+..+..+..|+.|+++.+.+.+.....+ ..+
T Consensus 311 d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af--------------------------~~l 364 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF--------------------------VGL 364 (873)
T ss_pred chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH--------------------------HHh
Confidence 999999999999999999997777899999999999999988666555422 347
Q ss_pred CcccEEecCCCcCCCc---CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 048417 328 NLVRIIDFSKNNFSGK---IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNH 404 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 404 (453)
.+|+.||+++|.++.. ....|..+++|+.|.+.||++......+|.+++.|++|||.+|.|..+-++.|..+ .|++
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKE 443 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhh
Confidence 7899999999998632 34467889999999999999994444899999999999999999998889999999 8999
Q ss_pred EEccCCccc
Q 048417 405 LNLSNNNLT 413 (453)
Q Consensus 405 L~l~~n~l~ 413 (453)
|-+..-.+.
T Consensus 444 Lv~nSssfl 452 (873)
T KOG4194|consen 444 LVMNSSSFL 452 (873)
T ss_pred hhhcccceE
Confidence 988654443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.2e-34 Score=255.22 Aligned_cols=411 Identities=27% Similarity=0.360 Sum_probs=228.2
Q ss_pred CcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCc
Q 048417 9 WIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 88 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~ 88 (453)
|.+-..++++++++|.++.. ...+.++..|..+++++|++ ...|.++ +.+..++.++.++|.+...++++.....++
T Consensus 41 wW~qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l-~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKL-SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred hhhhcchhhhhhccCchhhc-cHhhhcccceeEEEeccchh-hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 33344555566666655332 23355555556666666655 3444444 445555555555555555555555555555
Q ss_pred EEEccCCccccccccc--cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 89 VLSLGSNSFSIALPLI--SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 89 ~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
.++.++|.+....+.. +..+..++..+|++.... ..+..+.++..+++.+|.+.. .|...-.+.+|++++..
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp-----~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLP-----EDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCN 191 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhccccccccCc-----hHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccc
Confidence 5555555555443332 234445555555554222 222235555555555555552 23223335556666655
Q ss_pred cCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccC
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 246 (453)
.|.+. .+|+.++.+.+|..|++..|++...+ .|.+|+.|+.+.++.|.+ .-.|.....+++++..|+++.|++.. .
T Consensus 192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklke-~ 267 (565)
T KOG0472|consen 192 SNLLE-TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLKE-V 267 (565)
T ss_pred hhhhh-cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeecccccccc-C
Confidence 55555 45555555566666666666555444 555555666666655555 23455555555566666666665533 4
Q ss_pred chhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccch-hhhhh-----------------
Q 048417 247 PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAP-LIATL----------------- 308 (453)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~-~~~~~----------------- 308 (453)
|..++-+++|.+||+++|.++ ..|-.++++ .|+.|.+.+++..+.......+.-+ .+...
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 455555556666666666665 555555555 5565555555432222111110000 00000
Q ss_pred --------------------------------hhhHHHHhc--------------------------------------C
Q 048417 309 --------------------------------LEDAFVVMK--------------------------------------G 318 (453)
Q Consensus 309 --------------------------------~~~~~~~~~--------------------------------------~ 318 (453)
+.+.+.... +
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is 425 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS 425 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc
Confidence 000000000 0
Q ss_pred CcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccC
Q 048417 319 REAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSS 398 (453)
Q Consensus 319 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 398 (453)
.....++.+++|+.|++++|-+. ..|..++.+-.|+.|+++.|.+. .+|+++..+..++.+-.+.|++....++.+..
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 01222444566666666666554 55655666666666666666666 66666666666666666667777666677999
Q ss_pred CCCCCEEEccCCcccccCCCCcccceeecccCCCCCcc
Q 048417 399 LKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLC 436 (453)
Q Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~ 436 (453)
|.+|..||+.+|.+...+|.++.+++|+.++++|||..
T Consensus 504 m~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 99999999999999988888899999999999999865
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5.1e-33 Score=257.80 Aligned_cols=370 Identities=23% Similarity=0.296 Sum_probs=240.6
Q ss_pred CCcccEEEccCCcCC-CCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEE
Q 048417 12 PFQLATLGLRHCHLG-SRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 90 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L 90 (453)
++-++-.|+++|.+. +.+|.....++.++.|.|...++ -.+|+.+ +.+..|++|.+++|++......+..++.||.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 444555666666664 34555566666666666666665 5556555 55666666666666666555555556666666
Q ss_pred EccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCcc
Q 048417 91 SLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKF 170 (453)
Q Consensus 91 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 170 (453)
.+..|.+. .++ ++..+-.+..|.+||+++|+++ ..|..+..-.++-.|++++|.|
T Consensus 84 ~~R~N~LK---------------------nsG---iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 84 IVRDNNLK---------------------NSG---IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred hhhccccc---------------------cCC---CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc
Confidence 55555443 211 1112223555556666666555 4555555555555666666655
Q ss_pred CCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcc-cccCchh
Q 048417 171 TGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF-YNLLPKE 249 (453)
Q Consensus 171 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~ 249 (453)
..+....|.++..|-.|++++|++...++.+..+..|++|++++|.+.-.-...+ .++.+|.+|.+++..- ...+|..
T Consensus 139 etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Pts 217 (1255)
T KOG0444|consen 139 ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTS 217 (1255)
T ss_pred ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCc
Confidence 5222223445555556666666665555555555666666666654422111111 1344555555555432 2346667
Q ss_pred hcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCc
Q 048417 250 LCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNL 329 (453)
Q Consensus 250 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (453)
+..+.+|..+|++.|.+. .+|+++.++++|+.|+++++++......... -.+
T Consensus 218 ld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~---------------------------W~~ 269 (1255)
T KOG0444|consen 218 LDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGE---------------------------WEN 269 (1255)
T ss_pred hhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHH---------------------------Hhh
Confidence 777778888888888877 7888888888888888888776544332111 234
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCC-CCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG-RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
|++|++++|+++ ..|.++..++.|+.|+..+|++.- -+|..++.+.+|+.+...+|.+. .+|+.+..++.|+.|.|+
T Consensus 270 lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 270 LETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred hhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence 788999999998 888888889999999999998752 47888999999999999988877 899999999999999999
Q ss_pred CCcccccCCCCcccceeecccCCCCC-ccCCC
Q 048417 409 NNNLTGKIPSSTQLQSFDASSFSGND-LCRAP 439 (453)
Q Consensus 409 ~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~~~ 439 (453)
+|++...+..+.-++.|+.+|+..|| +..-|
T Consensus 348 ~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 348 HNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 99988666667888999999999998 54444
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=2.8e-31 Score=234.00 Aligned_cols=392 Identities=22% Similarity=0.278 Sum_probs=279.0
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 84 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~ 84 (453)
+.+.+.++..+.++++++|.+ ...|.+++++..++.++.++|++ +.+|.++ ....+|+.++++.|.+...++.++.+
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l-~~lp~aig~l~~l~~l~vs~n~l-s~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKL-SQLPAAIGELEALKSLNVSHNKL-SELPEQI-GSLISLVKLDCSSNELKELPDSIGRL 136 (565)
T ss_pred ccHhhhcccceeEEEeccchh-hhCCHHHHHHHHHHHhhcccchH-hhccHHH-hhhhhhhhhhccccceeecCchHHHH
Confidence 345567788899999999988 45788899999999999999998 8888887 77889999999999999888888889
Q ss_pred CCCcEEEccCCccccccccc--cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccE
Q 048417 85 AQLEVLSLGSNSFSIALPLI--SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMI 162 (453)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 162 (453)
..+..++-.+|++++.+... +.++..+++.+|.+....+..+ .++.|+++|+..|.++ .+|..++.+.+|..
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-----~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-----AMKRLKHLDCNSNLLE-TLPPELGGLESLEL 210 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-----HHHHHHhcccchhhhh-cCChhhcchhhhHH
Confidence 99999999999988776654 4577788888888775544433 2778888888887777 67777888888888
Q ss_pred EEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCc
Q 048417 163 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNK 241 (453)
Q Consensus 163 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 241 (453)
|++..|++. ..| .|+.+..|.++++..|.+...+ +..+.++++..||+..|.+ ++.|+.++ .+.+|..|++++|.
T Consensus 211 LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~c-lLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 211 LYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEIC-LLRSLERLDLSNND 286 (565)
T ss_pred HHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc-ccCchHHH-HhhhhhhhcccCCc
Confidence 888888887 555 5777777888887777776665 4555777777888877777 44666655 46677777777777
Q ss_pred ccccCchhhcCCCCccEEEccCCcCCC-----------------------------------------Cccccccccccc
Q 048417 242 FYNLLPKELCDLAFLQIVDLADNNLSG-----------------------------------------EVPRCIHNLRAM 280 (453)
Q Consensus 242 ~~~~~~~~~~~~~~L~~L~l~~~~~~~-----------------------------------------~~~~~~~~~~~L 280 (453)
+++ .|..++++ +|+.|.+.||.+.. ........+...
T Consensus 287 is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 287 ISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred ccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 755 34566666 66666666664320 000011222333
Q ss_pred ceeccccCcchhhhhh------------------------------------------hhhccchhhhhhhhhHHHHhcC
Q 048417 281 VTMNSHAGKAIQYQFL------------------------------------------LYASRAPLIATLLEDAFVVMKG 318 (453)
Q Consensus 281 ~~l~i~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 318 (453)
+.|++++-+...++.. ..+..+..+..+....+...+.
T Consensus 365 kiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N 444 (565)
T KOG0472|consen 365 KILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN 444 (565)
T ss_pred hhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc
Confidence 3333333221111110 0011111111111111222111
Q ss_pred ----CcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCc
Q 048417 319 ----REAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ 394 (453)
Q Consensus 319 ----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 394 (453)
..+.....+..|+.++++.|++. ..|..+.....++.+-.++|++....+..+.+|.+|..||+.+|.+. .+|.
T Consensus 445 N~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 445 NLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred chhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence 12333445667999999999997 78888877777888888889998556666999999999999999999 8999
Q ss_pred cccCCCCCCEEEccCCccc
Q 048417 395 SMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 395 ~l~~l~~L~~L~l~~n~l~ 413 (453)
.+.+|.+|++|.+++|+|.
T Consensus 523 ~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhccccceeEEEecCCccC
Confidence 9999999999999999999
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2.9e-30 Score=239.60 Aligned_cols=346 Identities=23% Similarity=0.279 Sum_probs=275.6
Q ss_pred ccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCccc--CCCcCc
Q 048417 4 KVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIH--GQIPNL 81 (453)
Q Consensus 4 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~--~~~~~l 81 (453)
.+|+.....++++.|.|....+ ..+|..++.+.+|++|.+++|++++... .+ ..++.||.+++.+|++. ++++.+
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~vhG-EL-s~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISVHG-EL-SDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred cCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhhhh-hh-ccchhhHHHhhhccccccCCCCchh
Confidence 4788888899999999998888 5678999999999999999999954433 33 67899999999999885 588999
Q ss_pred cCCCCCcEEEccCCcccccccc--ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCc
Q 048417 82 TNAAQLEVLSLGSNSFSIALPL--ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQN 159 (453)
Q Consensus 82 ~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 159 (453)
..+..|..|++++|++...+.. ..+++-.|++++|.+.......+. ++..|-.||+++|++. .+|..++.+..
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi----nLtDLLfLDLS~NrLe-~LPPQ~RRL~~ 174 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI----NLTDLLFLDLSNNRLE-MLPPQIRRLSM 174 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHH----hhHhHhhhccccchhh-hcCHHHHHHhh
Confidence 9999999999999999865543 356788999999998754444333 5888889999999998 77888999999
Q ss_pred ccEEEcccCccCCCCCccccccccccEEEccCCccc--cccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEe
Q 048417 160 LMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLC--GTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLIL 237 (453)
Q Consensus 160 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 237 (453)
|++|.+++|.+...-...+..+.+|+.|++++.+-+ .++..+..+.+|+.+|++.|++ ..+|...+ .+++|+.|++
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly-~l~~LrrLNL 252 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLY-KLRNLRRLNL 252 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHh-hhhhhheecc
Confidence 999999999887443445566777888888876533 3456778888999999999887 44676665 6889999999
Q ss_pred cCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhc
Q 048417 238 RSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMK 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (453)
++|.++.. ......+.+|++|+++.|+++ ++|.++.+++.|++
T Consensus 253 S~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~k----------------------------------- 295 (1255)
T KOG0444|consen 253 SGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTK----------------------------------- 295 (1255)
T ss_pred CcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHH-----------------------------------
Confidence 99988653 345666788899999999998 88888887776654
Q ss_pred CCcchhhhhcCcccEEecCCCcCC-CcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccc
Q 048417 318 GREAKYERTLNLVRIIDFSKNNFS-GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396 (453)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 396 (453)
|..++|.++ +.+|.-++.+..|+.+..++|.+. ..|+.+..|..|+.|.|++|++. .+|+.+
T Consensus 296 ---------------Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 296 ---------------LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred ---------------HHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh
Confidence 445555543 246667778888888888888777 88888888888888888888888 788888
Q ss_pred cCCCCCCEEEccCCccc
Q 048417 397 SSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 397 ~~l~~L~~L~l~~n~l~ 413 (453)
.-++.|+.|++++|.-.
T Consensus 359 HlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhcCCcceeeccCCcCc
Confidence 88888888888888543
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=1.6e-28 Score=237.49 Aligned_cols=402 Identities=25% Similarity=0.312 Sum_probs=235.1
Q ss_pred cCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcE
Q 048417 10 IPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEV 89 (453)
Q Consensus 10 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~ 89 (453)
..+-+|+.||+++|.+ +.+|..+..+++|+.|+++.|.+ ...|.+. .++.+|+++.|.+|.....+..+..+.+|++
T Consensus 42 ~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i-~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYI-RSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQY 118 (1081)
T ss_pred hheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhH-hhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccc
Confidence 4455699999999988 56788899999999999999999 7777665 7889999999999999999999999999999
Q ss_pred EEccCCccccccccc--cc-------------------cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCC
Q 048417 90 LSLGSNSFSIALPLI--SS-------------------YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQG 148 (453)
Q Consensus 90 L~l~~~~~~~~~~~~--~~-------------------~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 148 (453)
|++++|.+...+... +. .++.+++..+.+.+.+...+. .+.. .+++++|.+.
T Consensus 119 LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~----~l~~--~ldLr~N~~~- 191 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY----NLTH--QLDLRYNEME- 191 (1081)
T ss_pred cccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh----hhhe--eeecccchhh-
Confidence 999999887533221 11 234444444444443332221 1222 3666666655
Q ss_pred CCchhhhcCCcccEEEcccCccC--------------------CCCCccccccccccEEEccCCccccccccccccCCCC
Q 048417 149 ELPDCWMNYQNLMILDLSNNKFT--------------------GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALM 208 (453)
Q Consensus 149 ~~~~~l~~l~~L~~L~l~~~~~~--------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 208 (453)
.. .+..+..|+.+....|++. ...+. ....+|++++++.+++...++.+..+.+|+
T Consensus 192 ~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle 267 (1081)
T KOG0618|consen 192 VL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLE 267 (1081)
T ss_pred hh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccce
Confidence 11 1333444444444444333 11100 111234444444444444444444444444
Q ss_pred EEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccc-ccc-cceeccc
Q 048417 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN-LRA-MVTMNSH 286 (453)
Q Consensus 209 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~l~i~ 286 (453)
.+++..|.+ ...+..++ ...+|+.+.+..|.+.. +|......++|++|++..|++. ..|..+-. ... +..++.+
T Consensus 268 ~l~~n~N~l-~~lp~ri~-~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 268 ALNANHNRL-VALPLRIS-RITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred EecccchhH-HhhHHHHh-hhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhh
Confidence 444444444 22333332 33444444444444433 2333344455555555555554 33332211 111 3333333
Q ss_pred cCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCC
Q 048417 287 AGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG 366 (453)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 366 (453)
.++....+.. +......-...+.+...+++.-...+-....|+.|++++|++.......+.+++.|++|+++||.++
T Consensus 344 ~n~l~~lp~~--~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 344 SNKLSTLPSY--EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred hccccccccc--cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 3333322211 1111111111222222233334444556677888888888776333345667777888888888877
Q ss_pred CCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc-cCCCCcccceeecccCCCCC
Q 048417 367 RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG-KIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 367 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~n~ 434 (453)
.+|..+..++.|++|...+|++. .+| .+..++.|+.+|++.|+++. .++....-++|+.+|++||.
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77777777888888888888777 667 67788899999999998874 33433222789999999886
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=5.8e-27 Score=226.82 Aligned_cols=390 Identities=24% Similarity=0.266 Sum_probs=275.3
Q ss_pred CcccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCc
Q 048417 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNL 81 (453)
Q Consensus 2 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l 81 (453)
.+.+|..+..+.+|+.|.++.|-+ ...|....++.+|+++.|.+|++ ...|..+ ..+++|+.||++.|.+...+..+
T Consensus 57 ~~~fp~~it~l~~L~~ln~s~n~i-~~vp~s~~~~~~l~~lnL~~n~l-~~lP~~~-~~lknl~~LdlS~N~f~~~Pl~i 133 (1081)
T KOG0618|consen 57 ISSFPIQITLLSHLRQLNLSRNYI-RSVPSSCSNMRNLQYLNLKNNRL-QSLPASI-SELKNLQYLDLSFNHFGPIPLVI 133 (1081)
T ss_pred cccCCchhhhHHHHhhcccchhhH-hhCchhhhhhhcchhheeccchh-hcCchhH-HhhhcccccccchhccCCCchhH
Confidence 356788888899999999999977 55778889999999999999998 7888887 78899999999999998766655
Q ss_pred cCCCCCcEEEccCC-------------------ccccccccccccCcE-EECcCCCCCCchhhhhhhhhcccCc------
Q 048417 82 TNAAQLEVLSLGSN-------------------SFSIALPLISSYLIE-LDFSNNSISGSIFHFICYRANELNK------ 135 (453)
Q Consensus 82 ~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~L~~-L~l~~~~l~~~~~~~~~~~~~~~~~------ 135 (453)
..+..+..+..++| .+...+......++. |++.+|.+... .+..+++
T Consensus 134 ~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~-------dls~~~~l~~l~c 206 (1081)
T KOG0618|consen 134 EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL-------DLSNLANLEVLHC 206 (1081)
T ss_pred HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh-------hhhhccchhhhhh
Confidence 55554444444444 222222222334444 78887776521 1112333
Q ss_pred --------------ccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccc
Q 048417 136 --------------WQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSL 201 (453)
Q Consensus 136 --------------L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 201 (453)
++.|+.+.|.++...+ -....+|++++++.+.+. ..|++++.+.+|+.+++..|.++..+..+
T Consensus 207 ~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri 283 (1081)
T KOG0618|consen 207 ERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRI 283 (1081)
T ss_pred hhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHH
Confidence 4444444444442111 223578999999999999 67789999999999999999998888888
Q ss_pred cccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCC-CccEEEccCCcCCCCccc-ccccccc
Q 048417 202 ENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLA-FLQIVDLADNNLSGEVPR-CIHNLRA 279 (453)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~-~~~~~~~ 279 (453)
....+|+.+++..|.+.. ++... +....|++|++..|.+.......+.-.. ++..+..+.+.+. ..|. .=..++.
T Consensus 284 ~~~~~L~~l~~~~nel~y-ip~~l-e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNELEY-IPPFL-EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAA 360 (1081)
T ss_pred hhhhhHHHHHhhhhhhhh-CCCcc-cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHH
Confidence 888999999999999854 44332 4578999999999999776554444433 3677777777776 4441 1233455
Q ss_pred cceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEc
Q 048417 280 MVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNL 359 (453)
Q Consensus 280 L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 359 (453)
|..|.+.++....-.+......+.. .+...++..+..-......+++.|++|++++|.++ .+|..+..++.|++|..
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hL--KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHL--KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccce--eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 5566555554333222211111110 01112222233334455667888999999999998 78888999999999999
Q ss_pred CCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcc
Q 048417 360 SNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412 (453)
Q Consensus 360 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 412 (453)
.+|++. ..| .+..+++|+.+|++.|+++.........-|+||+||+++|..
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 999998 788 688999999999999999865444444448999999999974
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=8.6e-22 Score=210.76 Aligned_cols=340 Identities=19% Similarity=0.149 Sum_probs=230.0
Q ss_pred CCccccCCCcccEEEcCCCcc------cccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccc
Q 048417 29 FPSWLYSQKHLNYLDLSYSGI------IGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALP 102 (453)
Q Consensus 29 ~~~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 102 (453)
...+|.++++|+.|.+..+.. ...+|..+..-...|+.|.+.++.+...+..+ ...+|+.|++.++.+...+.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccc
Confidence 345688888999888866532 22355555333356889998888887776665 56788899998888765443
Q ss_pred --cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccc
Q 048417 103 --LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGS 180 (453)
Q Consensus 103 --~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 180 (453)
..+++|++|+++++......+ .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ .
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 236788888888765332222 23457888999998887666778888888889999998875444666544 6
Q ss_pred cccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccc-------ccCchhhcCC
Q 048417 181 LISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY-------NLLPKELCDL 253 (453)
Q Consensus 181 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~~~~~~~~~~ 253 (453)
+++|+.|++++|......+. ...+|+.|+++++.+.. +|..+ .+++|+.|.+.++... ...+.....+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~~-lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIEE-FPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCcccc-ccccc--cccccccccccccchhhccccccccchhhhhcc
Confidence 78888888888754322222 23578888888887743 45433 4677777777664321 1111223335
Q ss_pred CCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEE
Q 048417 254 AFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRII 333 (453)
Q Consensus 254 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 333 (453)
++|+.|++++|.....+|..+.++++|+.|++.+|........ . ..+++|+.|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~--------------------------~-~~L~sL~~L 830 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT--------------------------G-INLESLESL 830 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC--------------------------C-CCccccCEE
Confidence 6888889988877778888888888888888877653221000 0 135678888
Q ss_pred ecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCc
Q 048417 334 DFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN 411 (453)
Q Consensus 334 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 411 (453)
++++|..-...|.. .++|+.|++++|.+. .+|.++..+++|+.|++++|.-...+|..+..++.|+.+++++|.
T Consensus 831 ~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 831 DLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 88876543333332 357888888888887 677778888888888888865555677777778888888888874
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.9e-21 Score=208.22 Aligned_cols=340 Identities=16% Similarity=0.146 Sum_probs=260.4
Q ss_pred CCCcCCCcccEEEccCCcC------CCCCCccccCCC-cccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc
Q 048417 7 DNWIPPFQLATLGLRHCHL------GSRFPSWLYSQK-HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP 79 (453)
Q Consensus 7 ~~~~~~~~L~~L~L~~~~~------~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~ 79 (453)
.+|..+++|+.|.+..+.. ...+|..|..++ +|+.|.+.++.+ ..+|..+ ...+|++|+++++.+.....
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f--~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF--RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC--CccCCcEEECcCcccccccc
Confidence 3477889999999976532 223566666664 699999999988 7778775 46899999999999988777
Q ss_pred CccCCCCCcEEEccCCcccccccc--ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC
Q 048417 80 NLTNAAQLEVLSLGSNSFSIALPL--ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157 (453)
Q Consensus 80 ~l~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 157 (453)
.+..+++|+.|+++++......+. .+++|++|++++|..... ++..+..+++|+.|++++|.....+|..+ ++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~----lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVE----LPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccc----cchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 788899999999998764433332 367999999999865433 34445579999999999986554677654 78
Q ss_pred CcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccc------cCchHHHhccCc
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVE------NIPTWIRERFSR 231 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~ 231 (453)
++|++|++++|......|.. ..+|+.|++++|.+...+..+ .+++|+.|.+.++.... ..+...+...++
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 99999999999655455532 467999999999987666444 57888888887743211 111122234578
Q ss_pred ceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhh
Q 048417 232 IVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLED 311 (453)
Q Consensus 232 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (453)
|+.|++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|......
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~----------------- 841 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF----------------- 841 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc-----------------
Confidence 9999999998888889999999999999999987655777766 7899999999987532110
Q ss_pred HHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 312 AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
.....+|++|++++|.++ .+|.++..+++|+.|++++|.....+|..+..+++|+.+++++|.-.
T Consensus 842 ------------p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 842 ------------PDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ------------cccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 012357999999999998 78889999999999999997665578888889999999999999643
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=8.3e-19 Score=175.24 Aligned_cols=260 Identities=24% Similarity=0.247 Sum_probs=145.9
Q ss_pred CeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEecc
Q 048417 63 QIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLS 142 (453)
Q Consensus 63 ~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 142 (453)
.-..|+++++.++..+..+. .+|+.|++.+|+++.. +..+++|++|++++|.++... . ..++|+.|+++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~L-P~lp~~Lk~LdLs~N~LtsLP-~-------lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTSLP-V-------LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCC-CCCCCCCcEEEecCCccCccc-C-------cccccceeecc
Confidence 34566777776666555443 3667777777766643 234556666666666655221 0 13456666666
Q ss_pred CCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCc
Q 048417 143 GNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIP 222 (453)
Q Consensus 143 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 222 (453)
+|.++ .+|.. ...|+.|++++|.+. .+|. ..++|+.|++++|.+..++.. ...|+.|++++|.+.. +|
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCC---cccccccccccCcccc-cc
Confidence 66655 33332 244556666666665 3332 234566666666666544321 2345555566555532 22
Q ss_pred hHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccc
Q 048417 223 TWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRA 302 (453)
Q Consensus 223 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~ 302 (453)
. ...+|+.|++++|.+.. +|.. ..+|+.|++++|.+. .+|..
T Consensus 339 ~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l----------------------------- 380 (788)
T PRK15387 339 T----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----------------------------- 380 (788)
T ss_pred c----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc-----------------------------
Confidence 1 11345555555555543 2221 234455555555544 23221
Q ss_pred hhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEE
Q 048417 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESID 382 (453)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 382 (453)
+.+|+.|++++|.++ .+|.. .++|+.|++++|.+. .+|.. ..+|+.|+
T Consensus 381 ------------------------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~ 428 (788)
T PRK15387 381 ------------------------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLS 428 (788)
T ss_pred ------------------------ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhh
Confidence 234677777777776 34432 256777888888777 45542 34577778
Q ss_pred cCCCcCCCCCCccccCCCCCCEEEccCCcccccC
Q 048417 383 FSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKI 416 (453)
Q Consensus 383 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 416 (453)
+++|+++ .+|..+..++.|+.|++++|++++..
T Consensus 429 Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 429 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred hccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 8888777 66777777778888888888777543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=1.1e-18 Score=174.50 Aligned_cols=260 Identities=24% Similarity=0.260 Sum_probs=172.1
Q ss_pred CCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEc
Q 048417 86 QLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDL 165 (453)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 165 (453)
.-..|+++++.++..+....+.|+.|++.+|.++... . ..++|++|++++|+++ .+|.. .++|++|++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP-----~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP-----A---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCC-----C---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 4566777777777554444556777777777766321 1 2467777777777776 34432 356777777
Q ss_pred ccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 166 SNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 166 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
++|.+. .+|.. ..+|+.|++++|+++.++. ..++|+.|++++|.+.+ ++. ....|+.|++.+|.+..
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~----lp~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCC----CcccccccccccCcccc-
Confidence 777666 33332 2456677777777665543 23567777777776644 332 12346666666666644
Q ss_pred CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhh
Q 048417 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325 (453)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (453)
+|. + ..+|+.|++++|++. .+|..
T Consensus 337 LP~-l--p~~Lq~LdLS~N~Ls-~LP~l---------------------------------------------------- 360 (788)
T PRK15387 337 LPT-L--PSGLQELSVSDNQLA-SLPTL---------------------------------------------------- 360 (788)
T ss_pred ccc-c--ccccceEecCCCccC-CCCCC----------------------------------------------------
Confidence 222 1 235667777776665 33321
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
.++|+.|++++|.+. .+|.. .++|+.|++++|.+. .+|.. .++|+.|++++|++. .+|.. ..+|+.|
T Consensus 361 -p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L 427 (788)
T PRK15387 361 -PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSL 427 (788)
T ss_pred -Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhh
Confidence 234678889999887 45543 357999999999998 56643 368999999999998 46654 3478899
Q ss_pred EccCCcccccCCCCcccceeecccCCCCCccCCC
Q 048417 406 NLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAP 439 (453)
Q Consensus 406 ~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~~~ 439 (453)
++++|+++..+..+..+++|..+++++|++++..
T Consensus 428 ~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 428 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred hhccCcccccChHHhhccCCCeEECCCCCCCchH
Confidence 9999999955445688999999999999987653
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=4.6e-20 Score=163.25 Aligned_cols=286 Identities=21% Similarity=0.168 Sum_probs=137.6
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccC-Ccccccc-ccccccCCCCEEe
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK-NNLCGTI-HSLENCTALMTLD 211 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~ 211 (453)
+....++|..|+|+..-+..|..+++|+.|+|+.|.|..+.|..|.+++.+..|-+.+ |+|+.++ ..|.++.+++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3455566666666644445566666666666666666666666666666655554444 6666655 4556666666666
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
+.-|.+.. +....+..++++..|.+..|.+...-...|..+..++.+.+..|.+. +..+++.+.+. .
T Consensus 147 lNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i-----cdCnL~wla~~-------~ 213 (498)
T KOG4237|consen 147 LNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI-----CDCNLPWLADD-------L 213 (498)
T ss_pred cChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc-----cccccchhhhH-------H
Confidence 66555533 33344445666666666666554433335555555555555555421 11111111110 0
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCC-ccccCCCCCcEEEcCCccCCCCCCc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP-LEVTNLKVLQSVNLSNNFFTGRIPE 370 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~ 370 (453)
......+++........+...-.. ......+......+.+--.+.+....+.| ..|..+++|+.|++++|++++.-+.
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred hhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 000111111111111111110000 00000011111111111111222222333 2355566666666666666655555
Q ss_pred cccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCC
Q 048417 371 SVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGN 433 (453)
Q Consensus 371 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n 433 (453)
+|.....+++|.|..|++...-..+|.++..|+.|+|.+|+|+..-|.. ..+.+|..+++-+|
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 6666666666666666665444445666666666666666666544443 55556666665555
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=3.8e-20 Score=163.73 Aligned_cols=301 Identities=20% Similarity=0.172 Sum_probs=208.9
Q ss_pred CCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEccc-CccCC
Q 048417 94 SNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSN-NKFTG 172 (453)
Q Consensus 94 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~ 172 (453)
+-+++..+...++.-.++++..|+++....+.+ +.+++|+.|||++|.|+..-|+.|.++.++.+|-+-+ |+|++
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF----~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQISSIPPGAF----KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCcccCChhhc----cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 334454555556788999999999987666654 4699999999999999988999999999988876655 89997
Q ss_pred CCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhc
Q 048417 173 NLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELC 251 (453)
Q Consensus 173 ~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 251 (453)
..-..|.++..++.|.+.-|++.-+. ..+..++++..|.+..|.+. .++...+..+.+++.+.+..|++.. .+
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dC 204 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DC 204 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----cc
Confidence 66667999999999999988887666 67888999999999999873 3565556678888888888776421 12
Q ss_pred CCCCccEEEccCCcCCCCccccccccc---ccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcC
Q 048417 252 DLAFLQIVDLADNNLSGEVPRCIHNLR---AMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328 (453)
Q Consensus 252 ~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (453)
+++.+...... +.+. ..+..+. .+..-.+..-+.-++... ...+.......+..........+..++
T Consensus 205 nL~wla~~~a~-~~ie----tsgarc~~p~rl~~~Ri~q~~a~kf~c~-----~esl~s~~~~~d~~d~~cP~~cf~~L~ 274 (498)
T KOG4237|consen 205 NLPWLADDLAM-NPIE----TSGARCVSPYRLYYKRINQEDARKFLCS-----LESLPSRLSSEDFPDSICPAKCFKKLP 274 (498)
T ss_pred ccchhhhHHhh-chhh----cccceecchHHHHHHHhcccchhhhhhh-----HHhHHHhhccccCcCCcChHHHHhhcc
Confidence 22222111000 0000 0000000 000000000000000000 000000000111111122234477899
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
+|+.+++++|.++++-+.+|....++++|++.+|++...-..+|.++.+|+.|+|++|+|+-..|-.|+.+..|.+|++-
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 99999999999998999999999999999999999985555788999999999999999998889999999999999999
Q ss_pred CCcccc
Q 048417 409 NNNLTG 414 (453)
Q Consensus 409 ~n~l~~ 414 (453)
.|++..
T Consensus 355 ~Np~~C 360 (498)
T KOG4237|consen 355 SNPFNC 360 (498)
T ss_pred cCcccC
Confidence 988763
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.1e-17 Score=168.28 Aligned_cols=204 Identities=26% Similarity=0.397 Sum_probs=98.7
Q ss_pred cccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCC
Q 048417 135 KWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGE 214 (453)
Q Consensus 135 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 214 (453)
+|++|++++|.++ .+|..+. ..|+.|++++|.+. .+|..+. .+|+.|++++|++..++..+. ++|+.|++++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC
Confidence 4455555555444 3333221 24555555555544 3333322 245555555555544332221 3455555555
Q ss_pred CcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhh
Q 048417 215 NELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQ 294 (453)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~ 294 (453)
|.+.. +|..+ .+.|+.|++++|.+.. +|..+ .++|+.|++++|.++ .+|..+
T Consensus 293 N~Lt~-LP~~l---p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l-------------------- 344 (754)
T PRK15370 293 NSIRT-LPAHL---PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASL-------------------- 344 (754)
T ss_pred Ccccc-Ccccc---hhhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhh--------------------
Confidence 55532 22221 1245556666665543 22222 245666677666665 333221
Q ss_pred hhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccC
Q 048417 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGT 374 (453)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 374 (453)
+++|+.|++++|+++ .+|..+. +.|+.|++++|.+. .+|..+.
T Consensus 345 --------------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 345 --------------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred --------------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH-
Confidence 123556666666555 3443332 45666666666665 4444332
Q ss_pred CCCCCEEEcCCCcCCCCCCccc----cCCCCCCEEEccCCccc
Q 048417 375 MRSLESIDFSLNQLSGEIPQSM----SSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 375 l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~ 413 (453)
+.|+.|++++|++. .+|+.+ ..++.+..|++.+|++.
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 24666666666665 333322 23455666666666655
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=3.6e-17 Score=164.54 Aligned_cols=247 Identities=24% Similarity=0.299 Sum_probs=161.1
Q ss_pred CCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEec
Q 048417 62 SQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYL 141 (453)
Q Consensus 62 ~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l 141 (453)
.+...|+++++.++..+..+ ..+|+.|++++|.+.......+++|++|++++|.+... +..+ .+.|+.|++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsL-P~~l------~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSI-PATL------PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccC-Chhh------hccccEEEC
Confidence 34677788777777665544 24678888888877766555566788888888777632 2211 346778888
Q ss_pred cCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccC
Q 048417 142 SGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENI 221 (453)
Q Consensus 142 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 221 (453)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++.++..+. ++|+.|++++|.+.. +
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-C
Confidence 888777 5565543 46788888888777 4555443 468888888887776554332 467777888777753 4
Q ss_pred chHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhcc
Q 048417 222 PTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASR 301 (453)
Q Consensus 222 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~ 301 (453)
|... .++|+.|.+++|.+.. +|..+ .++|+.|++++|++. .+|..+
T Consensus 320 P~~l---~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--------------------------- 365 (754)
T PRK15370 320 PETL---PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--------------------------- 365 (754)
T ss_pred Cccc---cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh---------------------------
Confidence 4332 2577788888877765 44444 357888888887776 444321
Q ss_pred chhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccc----cCCCC
Q 048417 302 APLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV----GTMRS 377 (453)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l----~~l~~ 377 (453)
+++|+.|++++|.++ .+|..+. +.|+.|++++|++. .+|..+ ...+.
T Consensus 366 -------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~ 416 (754)
T PRK15370 366 -------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQ 416 (754)
T ss_pred -------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCC
Confidence 234677888887776 4454443 35777888888777 555433 33467
Q ss_pred CCEEEcCCCcCC
Q 048417 378 LESIDFSLNQLS 389 (453)
Q Consensus 378 L~~L~l~~n~l~ 389 (453)
+..|++.+|++.
T Consensus 417 l~~L~L~~Npls 428 (754)
T PRK15370 417 PTRIIVEYNPFS 428 (754)
T ss_pred ccEEEeeCCCcc
Confidence 778888888776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.2e-18 Score=162.57 Aligned_cols=65 Identities=22% Similarity=0.115 Sum_probs=30.1
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCC------CCchhhhcCCcccEEEcccCccC
Q 048417 107 YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQG------ELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
.|+++++.++.++......++..+...+.+++++++++.+.+ ..+..+..+++|+.|++++|.+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 344555555554443333444444445556666655554431 11123334445555555555444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.1e-17 Score=156.07 Aligned_cols=271 Identities=21% Similarity=0.248 Sum_probs=157.0
Q ss_pred EEEccCCcCC-CCCCccccCCCcccEEEcCCCccccc----chhhHhhcCCCeEEEEccCCcccC-------CCcCccCC
Q 048417 17 TLGLRHCHLG-SRFPSWLYSQKHLNYLDLSYSGIIGT----IPNIFWSSASQIYVLDLSFNQIHG-------QIPNLTNA 84 (453)
Q Consensus 17 ~L~L~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~ls~~~~~~-------~~~~l~~~ 84 (453)
.|+|..+.++ ......+..+++|+.++++++.++.. ++..+ ...++++.++++++.+.. ....+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3555555554 23334455566677777777665332 22222 345567777776665542 11234455
Q ss_pred CCCcEEEccCCccccccccc---c---ccCcEEECcCCCCCCchhhhhhhhhccc-CcccEEeccCCCCCCC----Cchh
Q 048417 85 AQLEVLSLGSNSFSIALPLI---S---SYLIELDFSNNSISGSIFHFICYRANEL-NKWQILYLSGNFLQGE----LPDC 153 (453)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~~~---~---~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~----~~~~ 153 (453)
++|+.|++++|.+....... + +.|++|++++|.+.......+...+..+ ++|+.|++++|.+++. .+..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 67777777777665322211 1 2377777777776654444555555556 7777777777776632 2234
Q ss_pred hhcCCcccEEEcccCccCCCC----CccccccccccEEEccCCccccc-----cccccccCCCCEEeCCCCcccccCchH
Q 048417 154 WMNYQNLMILDLSNNKFTGNL----PISLGSLISLQSLHLRKNNLCGT-----IHSLENCTALMTLDVGENELVENIPTW 224 (453)
Q Consensus 154 l~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (453)
+..+..|++|++++|.+.+.. +..+...++|+.|++++|.+.+. ...+..+++|+.|++++|.+.+.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 455667777777777766321 12233445777777777776532 234556677888888887775533333
Q ss_pred HHhcc----CcceEEEecCCccccc----CchhhcCCCCccEEEccCCcCCCC----cccccccc-cccceeccccC
Q 048417 225 IRERF----SRIVVLILRSNKFYNL----LPKELCDLAFLQIVDLADNNLSGE----VPRCIHNL-RAMVTMNSHAG 288 (453)
Q Consensus 225 ~~~~~----~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~l~i~~~ 288 (453)
+...+ +.|+.|++.+|.++.. +...+..++.|+++++++|.+... +...+... +.++.+++.++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 33332 6788888888877522 233455567888888888888743 33344444 56666665554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=3e-16 Score=123.60 Aligned_cols=161 Identities=24% Similarity=0.409 Sum_probs=101.6
Q ss_pred ccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhh
Q 048417 228 RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIAT 307 (453)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~ 307 (453)
.+..++.|.+++|.++. .|..++.+.+|+.|++.+|++. ++|..+++++.|+.|++.-+...
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~---------------- 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN---------------- 92 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh----------------
Confidence 35667777888888765 4556788888888888888887 88888877777666654433211
Q ss_pred hhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCC-cCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCC
Q 048417 308 LLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG-KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLN 386 (453)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 386 (453)
.....++++|-|+.||++.|++.+ ..|..|..+..|+-|++++|.+. .+|..++.+++|+.|.+..|
T Consensus 93 -----------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 93 -----------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred -----------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 112333445556666666665542 45555555666666666666665 56666666666666666666
Q ss_pred cCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 048417 387 QLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 387 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
.+. ..|..+..+..|++|.+++|.++-.+|++
T Consensus 161 dll-~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 665 55666666666666666666666545544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=3.6e-16 Score=123.17 Aligned_cols=156 Identities=28% Similarity=0.414 Sum_probs=106.7
Q ss_pred ccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEE
Q 048417 33 LYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELD 112 (453)
Q Consensus 33 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 112 (453)
+.++.+.+.|.+++|+++ .+|..+ +.+.+|+.|++++|+++..+..+..+++|+.|+++-|.+..
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~------------- 93 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI------------- 93 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc-------------
Confidence 455677888889999984 444444 77888999999999998888888888888888888776552
Q ss_pred CcCCCCCCchhhhhhhhhcccCcccEEeccCCCCC-CCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccC
Q 048417 113 FSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ-GELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRK 191 (453)
Q Consensus 113 l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 191 (453)
++..|+.+|.|+.||+++|.+. ..+|..|..+..|+.|.+++|++. ..|..++++.+||.|.+++
T Consensus 94 -------------lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 94 -------------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred -------------CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeecc
Confidence 2333445666666666666654 245555666666666666666666 5566666666666666666
Q ss_pred CccccccccccccCCCCEEeCCCCcc
Q 048417 192 NNLCGTIHSLENCTALMTLDVGENEL 217 (453)
Q Consensus 192 ~~~~~~~~~~~~~~~L~~L~l~~~~~ 217 (453)
|.+...+..++.+..|+.|.+.+|.+
T Consensus 160 ndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 160 NDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred CchhhCcHHHHHHHHHHHHhccccee
Confidence 66665555566666666666666655
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.1e-12 Score=118.42 Aligned_cols=235 Identities=21% Similarity=0.191 Sum_probs=162.2
Q ss_pred EEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCc-hhhhcCCcccEEEcccCccCCC--CCccccccccccE
Q 048417 110 ELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELP-DCWMNYQNLMILDLSNNKFTGN--LPISLGSLISLQS 186 (453)
Q Consensus 110 ~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~ 186 (453)
.+.+++-.+...+++.++..-+++.+|+.+.+.++.+..... .....+++++.|+++.|-+..- +......+|+|+.
T Consensus 97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~ 176 (505)
T KOG3207|consen 97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLEN 176 (505)
T ss_pred HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchh
Confidence 344555566666677777777789999999999998873221 3567799999999999977621 2223457899999
Q ss_pred EEccCCcccccc--ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCC
Q 048417 187 LHLRKNNLCGTI--HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADN 264 (453)
Q Consensus 187 L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (453)
|+++.|++.... .....+++++.|.+++|.+......++...+|+++.|++..|...........-+..|++|++++|
T Consensus 177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred cccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence 999999886433 233467899999999999987777788888999999999999532222233445678999999999
Q ss_pred cCCCCcc--cccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCC
Q 048417 265 NLSGEVP--RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG 342 (453)
Q Consensus 265 ~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 342 (453)
++. ..+ .....++.|..|++..+.+.+.....-+ ...-...+++|++|++..|++.+
T Consensus 257 ~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~--------------------s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 257 NLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE--------------------SLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ccc-ccccccccccccchhhhhccccCcchhcCCCcc--------------------chhhhcccccceeeecccCcccc
Confidence 886 333 4567777887777777665544433111 11112345677888888777753
Q ss_pred c-CCccccCCCCCcEEEcCCccCC
Q 048417 343 K-IPLEVTNLKVLQSVNLSNNFFT 365 (453)
Q Consensus 343 ~-~~~~~~~~~~L~~L~l~~n~~~ 365 (453)
. ....+..+++|++|.+..|.+.
T Consensus 316 w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 316 WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccchhhccchhhhhhccccccc
Confidence 2 1223445667777777776664
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.23 E-value=1.5e-12 Score=114.50 Aligned_cols=245 Identities=23% Similarity=0.217 Sum_probs=126.7
Q ss_pred CcCCCcccEEEccCCcCCCC----CCccccCCCcccEEEcCCCc---ccccchhhH------hhcCCCeEEEEccCCccc
Q 048417 9 WIPPFQLATLGLRHCHLGSR----FPSWLYSQKHLNYLDLSYSG---IIGTIPNIF------WSSASQIYVLDLSFNQIH 75 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~~~----~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~L~~L~ls~~~~~ 75 (453)
......+++++||+|.+... ..+.+.+.+.|+..++++-- ....+|..+ ...++.|++++||+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34456777888888877443 33445666777777777642 223344332 234567777777777664
Q ss_pred C-CCc----CccCCCCCcEEEccCCccccccccccc-cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCC
Q 048417 76 G-QIP----NLTNAAQLEVLSLGSNSFSIALPLISS-YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE 149 (453)
Q Consensus 76 ~-~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 149 (453)
. .+. -+..+..|++|.+.+|++.......+. -|..|. ....+++.++|++++..+|++...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-------------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA-------------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH-------------HHhccCCCcceEEEEeeccccccc
Confidence 2 222 234556777777777766532221110 000000 111122344555555555554421
Q ss_pred ----CchhhhcCCcccEEEcccCccCCCCC----ccccccccccEEEccCCcccc-----ccccccccCCCCEEeCCCCc
Q 048417 150 ----LPDCWMNYQNLMILDLSNNKFTGNLP----ISLGSLISLQSLHLRKNNLCG-----TIHSLENCTALMTLDVGENE 216 (453)
Q Consensus 150 ----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~ 216 (453)
+...|...+.|+.+.+..|.+..... ..|..++.|+.|++++|.++. +...+..+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 11223334455555555554431111 224455666666666665542 12455666677777777776
Q ss_pred ccccCchHHH----hccCcceEEEecCCccccc----CchhhcCCCCccEEEccCCcC
Q 048417 217 LVENIPTWIR----ERFSRIVVLILRSNKFYNL----LPKELCDLAFLQIVDLADNNL 266 (453)
Q Consensus 217 ~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 266 (453)
+.......+. ...|.|+++.+.+|.++.. +...+...+.|..|++++|.+
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6544333322 3346677777777766432 122344466777777777776
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=3.8e-12 Score=115.05 Aligned_cols=180 Identities=23% Similarity=0.234 Sum_probs=104.3
Q ss_pred CCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC---CcCccCCCCCcEEEccCCccccccc----ccccc
Q 048417 35 SQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ---IPNLTNAAQLEVLSLGSNSFSIALP----LISSY 107 (453)
Q Consensus 35 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~ 107 (453)
++.+|+.+.|.++.............|++++.||+|.|-+..+ ..-...+++|+.|+++.|++..... ..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4556666666666552222113335667777777777655432 2223456677777777776654332 23567
Q ss_pred CcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCC--cccccccccc
Q 048417 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP--ISLGSLISLQ 185 (453)
Q Consensus 108 L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~l~~l~~L~ 185 (453)
|+.|.++.|.++.. .+...+..+|.|+.|++.+|............++.|++|+|++|.+.+ .+ ...+.++.|.
T Consensus 199 lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN 274 (505)
T ss_pred hheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence 77777777777743 333334467888888888774322333334557778888888887662 22 2345677777
Q ss_pred EEEccCCcccccc-cc------ccccCCCCEEeCCCCccc
Q 048417 186 SLHLRKNNLCGTI-HS------LENCTALMTLDVGENELV 218 (453)
Q Consensus 186 ~L~l~~~~~~~~~-~~------~~~~~~L~~L~l~~~~~~ 218 (453)
.|+++.+.+..+. .. ...+++|+.|++..|.+.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 7777777665443 11 234455666666655553
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=1.9e-12 Score=113.77 Aligned_cols=145 Identities=23% Similarity=0.233 Sum_probs=74.9
Q ss_pred ccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCC---CCCCCchhhhcCCcccEEEcccCccCCCCCccccccc
Q 048417 106 SYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNF---LQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 182 (453)
Q Consensus 106 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 182 (453)
.+++++++++|.+...-...++..+.+.+.|+..+++.-- ....+|..+.. ....+..+|
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~-----------------l~~aL~~~~ 92 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKM-----------------LSKALLGCP 92 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHH-----------------HHHHHhcCC
Confidence 4667777777777766666777777777777777776431 11122222111 112233445
Q ss_pred cccEEEccCCcccc-----ccccccccCCCCEEeCCCCcccccCchHHH------------hccCcceEEEecCCccccc
Q 048417 183 SLQSLHLRKNNLCG-----TIHSLENCTALMTLDVGENELVENIPTWIR------------ERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 183 ~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~L~~L~l~~~~~~~~ 245 (453)
+|++++|++|.+.. ....++++..|++|.+.+|.+.......+. .+-+.|+++....|++...
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 56666666665432 113445566777777777765322111111 1234555555555554322
Q ss_pred C----chhhcCCCCccEEEccCCcCC
Q 048417 246 L----PKELCDLAFLQIVDLADNNLS 267 (453)
Q Consensus 246 ~----~~~~~~~~~L~~L~l~~~~~~ 267 (453)
. ...|...+.|+.+.++.|.+.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~ 198 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIR 198 (382)
T ss_pred cHHHHHHHHHhccccceEEEeccccc
Confidence 1 223444556666666665554
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=4.3e-11 Score=120.37 Aligned_cols=117 Identities=36% Similarity=0.651 Sum_probs=105.9
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
.++.|+++++.+.+..|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++.+.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCC--cccceeecccCCCCC-ccCCCCCCCCC
Q 048417 409 NNNLTGKIPSS--TQLQSFDASSFSGND-LCRAPLSGNCS 445 (453)
Q Consensus 409 ~n~l~~~~~~~--~~l~~L~~l~l~~n~-l~~~~~~~~c~ 445 (453)
+|++++.+|.. ....++..+++.+|+ +|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999988865 223466788999999 99988766674
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=2.2e-11 Score=100.46 Aligned_cols=109 Identities=28% Similarity=0.451 Sum_probs=43.4
Q ss_pred hcCcccEEecCCCcCCCcCCcccc-CCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccc-cCCCCCC
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVT-NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM-SSLKFLN 403 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 403 (453)
++.++++|++.++.++. + +.++ .+.+|+.|++++|.+. .+ +.+..++.|+.|++++|+++. +.+.+ ..+|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 34568999999999973 3 3454 5789999999999998 44 458889999999999999994 44445 4689999
Q ss_pred EEEccCCcccc--cCCCCcccceeecccCCCCCccCCC
Q 048417 404 HLNLSNNNLTG--KIPSSTQLQSFDASSFSGNDLCRAP 439 (453)
Q Consensus 404 ~L~l~~n~l~~--~~~~~~~l~~L~~l~l~~n~l~~~~ 439 (453)
+|++++|+|.. .+..+..+++|+.+++.|||+|..+
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 99999999984 2334477899999999999998664
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=2.3e-10 Score=117.66 Aligned_cols=84 Identities=21% Similarity=0.217 Sum_probs=42.9
Q ss_pred CCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCC-CCccccCCCCCCEEEccCCccc----ccCCCCcccce
Q 048417 350 NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE-IPQSMSSLKFLNHLNLSNNNLT----GKIPSSTQLQS 424 (453)
Q Consensus 350 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~l~~ 424 (453)
-.++|+.|++.+|...+.+......+..+..+.+..+.+.+. ......+++++..+.+..-.+. ...|..+.+|.
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 346777777777666545444445555555544444444433 2233334444444444332222 12455566777
Q ss_pred eecccCCCC
Q 048417 425 FDASSFSGN 433 (453)
Q Consensus 425 L~~l~l~~n 433 (453)
+..+.+.++
T Consensus 848 ~~~~~i~~~ 856 (889)
T KOG4658|consen 848 LSTLTIVGC 856 (889)
T ss_pred ccccceecc
Confidence 777766554
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=5.7e-12 Score=117.54 Aligned_cols=105 Identities=31% Similarity=0.444 Sum_probs=56.4
Q ss_pred CcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEe
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLIL 237 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 237 (453)
.--...+++.|++. .+|..++.+..|+.+.+..|.+..++..+..+..|+.++++.|.+. ..|..++ .--|+.+.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEE
Confidence 33444566666666 5566666666666666666666666666666666666666666652 2444333 123444444
Q ss_pred cCCcccccCchhhcCCCCccEEEccCCcCC
Q 048417 238 RSNKFYNLLPKELCDLAFLQIVDLADNNLS 267 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 267 (453)
++|+++. +|..++....|..|+.+.|++.
T Consensus 151 sNNkl~~-lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 151 SNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred ecCcccc-CCcccccchhHHHhhhhhhhhh
Confidence 4444432 3333444444444444444443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=7.9e-11 Score=101.66 Aligned_cols=86 Identities=23% Similarity=0.299 Sum_probs=50.7
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCC-CCccccCCCCCCEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE-IPQSMSSLKFLNHL 405 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L 405 (453)
+++|+.||+++|.++ ....|-..+-+.+.|.+++|.+.+. ..++.+-+|..||+++|+|.+. -.+.+..+|-|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 455666666666665 4444555566666666666666522 3455566666666666666532 12355566666666
Q ss_pred EccCCccccc
Q 048417 406 NLSNNNLTGK 415 (453)
Q Consensus 406 ~l~~n~l~~~ 415 (453)
.+.+|++.+.
T Consensus 405 ~L~~NPl~~~ 414 (490)
T KOG1259|consen 405 RLTGNPLAGS 414 (490)
T ss_pred hhcCCCcccc
Confidence 6666666643
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=1.1e-09 Score=105.26 Aligned_cols=101 Identities=34% Similarity=0.476 Sum_probs=53.6
Q ss_pred EEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhcc-CcceEEEecCCcccccCchhhcCCCCccEEEccCC
Q 048417 186 SLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERF-SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADN 264 (453)
Q Consensus 186 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 264 (453)
.+....+.+......+...+.++.+++.++.+.. ++.... .. ++|+.+++++|.+... +..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~-~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD-IPPLIG-LLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccccc-Cccccc-cchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 4555555554444444444666777777666644 332221 23 2666666666666442 234556666666666666
Q ss_pred cCCCCcccccccccccceeccccCcc
Q 048417 265 NLSGEVPRCIHNLRAMVTMNSHAGKA 290 (453)
Q Consensus 265 ~~~~~~~~~~~~~~~L~~l~i~~~~~ 290 (453)
++. .++......+.+..++++++++
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCcc
Confidence 665 4444443444444444444443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=4.7e-10 Score=92.55 Aligned_cols=125 Identities=25% Similarity=0.261 Sum_probs=33.3
Q ss_pred cCcccEEeccCCCCCCCCchhhh-cCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccc-cccCCCCEE
Q 048417 133 LNKWQILYLSGNFLQGELPDCWM-NYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSL-ENCTALMTL 210 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L 210 (453)
..++++|+++++.++. + +.+. .+.+|+.|++++|.+... +.+..++.|+.|++++|.++.+.+.+ ..+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 4455666666666652 2 1233 355666666666666522 23555566666666666665543322 245566666
Q ss_pred eCCCCcccccCchHHHhccCcceEEEecCCcccccC---chhhcCCCCccEEEc
Q 048417 211 DVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL---PKELCDLAFLQIVDL 261 (453)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l 261 (453)
++++|.+...........+++|+.|++.+|++.... ...+..+|+|+.||-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 666665543222222234555555555555554321 112344555555543
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=2.6e-11 Score=113.21 Aligned_cols=193 Identities=27% Similarity=0.412 Sum_probs=150.9
Q ss_pred cccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEE
Q 048417 181 LISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVD 260 (453)
Q Consensus 181 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 260 (453)
+.--...+++.|++.+++....-+..|+.+.++.|.+.. ++..+. .+..|+.++++.|.+.. .|..++.++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~-ip~~i~-~L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT-IPEAIC-NLEALTFLDLSSNQLSH-LPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhcccee-cchhhh-hhhHHHHhhhccchhhc-CChhhhcCc-ceeEE
Confidence 334456788888888888777667777878887777643 454443 57788888888888755 455666665 78888
Q ss_pred ccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC
Q 048417 261 LADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340 (453)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 340 (453)
+++|+++ .+|+.++. .+.|..||.+.|.+
T Consensus 150 ~sNNkl~-~lp~~ig~--------------------------------------------------~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGL--------------------------------------------------LPTLAHLDVSKNEI 178 (722)
T ss_pred EecCccc-cCCccccc--------------------------------------------------chhHHHhhhhhhhh
Confidence 8888887 66766553 33467788888888
Q ss_pred CCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-
Q 048417 341 SGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS- 419 (453)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~- 419 (453)
. ..|..+..+.+|+.|++..|.+. .+|+.+..++ |..||++.|++. .+|-+|.+|..|++|-|.+|.++. +|..
T Consensus 179 ~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI 253 (722)
T KOG0532|consen 179 Q-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQI 253 (722)
T ss_pred h-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence 7 77888999999999999999998 7787787666 999999999999 899999999999999999999994 4533
Q ss_pred ---cccceeecccCCCC
Q 048417 420 ---TQLQSFDASSFSGN 433 (453)
Q Consensus 420 ---~~l~~L~~l~l~~n 433 (453)
+..+=.++|+.+-+
T Consensus 254 C~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 254 CEKGKVHIFKYLSTQAC 270 (722)
T ss_pred Hhccceeeeeeecchhc
Confidence 66777888888765
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=1.3e-09 Score=104.74 Aligned_cols=193 Identities=28% Similarity=0.282 Sum_probs=103.8
Q ss_pred EEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCC-CCcEEEccCCccccc--cccccccCcEEECcCCC
Q 048417 41 YLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAA-QLEVLSLGSNSFSIA--LPLISSYLIELDFSNNS 117 (453)
Q Consensus 41 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~--~~~~~~~L~~L~l~~~~ 117 (453)
.+++..+.+....... ...+.++.|++.++.++..++...... +|+.|++++|.+... ....++.|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~--~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISEL--LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhh--hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3555555542222222 233556666666666665555555553 666666666666554 33445666666666666
Q ss_pred CCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccc
Q 048417 118 ISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT 197 (453)
Q Consensus 118 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 197 (453)
+...... ....+.|+.|++++|+++ .+|........|+++.+++|... ..+..+..+.++..+.+.+|++...
T Consensus 175 l~~l~~~-----~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~ 247 (394)
T COG4886 175 LSDLPKL-----LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL 247 (394)
T ss_pred hhhhhhh-----hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec
Confidence 5532221 113566666666666666 44443344455666666666433 2333455556666666666665544
Q ss_pred cccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 198 IHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 198 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
...+..++.++.|++++|.+..... .....+++.++++++.+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cchhccccccceecccccccccccc---ccccCccCEEeccCcccccc
Confidence 5555556666666666666544222 23455666666666655433
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.3e-10 Score=100.26 Aligned_cols=128 Identities=29% Similarity=0.289 Sum_probs=80.1
Q ss_pred CCCCCcEEEccCCccccccc--cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 83 NAAQLEVLSLGSNSFSIALP--LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 83 ~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
.+.-|..+++++|.++.... ...|.++.|++++|.+.... .++.+++|+.||+++|.++ .+..+=.++-++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~------nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ------NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh------hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 33467777888777764332 23567777777777665321 1334777777777777776 333444556677
Q ss_pred cEEEcccCccCCCCCccccccccccEEEccCCcccccc--ccccccCCCCEEeCCCCcccc
Q 048417 161 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGENELVE 219 (453)
Q Consensus 161 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~ 219 (453)
++|++.+|.+... ..+.++-+|.+|++++|++..+. ..++.++-|+++.+.+|.+..
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777777776522 33556666777777777776554 556666666666666665533
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=1e-09 Score=113.07 Aligned_cols=130 Identities=18% Similarity=0.079 Sum_probs=80.5
Q ss_pred chhhhhcCcccEEecCCCcCCCcCCcccc-----C-CCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCc
Q 048417 321 AKYERTLNLVRIIDFSKNNFSGKIPLEVT-----N-LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ 394 (453)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----~-~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 394 (453)
......+.+|+.|.+.++.+.+....+.. . ++++..+.+.+|... ..+.+....++|+.|.+.+++..+.+..
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCC
Confidence 33445677888899888877533222211 1 345555566666544 4444455678999999999988777666
Q ss_pred cccCCCCCCEEEccCCccccc--CCCCcccceeecccCCCCCccCCCCCCCCCCCccCCC
Q 048417 395 SMSSLKFLNHLNLSNNNLTGK--IPSSTQLQSFDASSFSGNDLCRAPLSGNCSEHVSIPK 452 (453)
Q Consensus 395 ~l~~l~~L~~L~l~~n~l~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~~~c~~~~~~~~ 452 (453)
....+..++++-+..+.+.+. +...+.++++.++.+.+-.+...... .|++..++|.
T Consensus 789 ~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve-~~p~l~~~P~ 847 (889)
T KOG4658|consen 789 KLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVE-ECPKLGKLPL 847 (889)
T ss_pred HHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehh-cCcccccCcc
Confidence 677777777766766766654 45556677766666655432222222 2666665553
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1e-09 Score=74.35 Aligned_cols=61 Identities=43% Similarity=0.558 Sum_probs=36.5
Q ss_pred CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcc
Q 048417 352 KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNL 412 (453)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 412 (453)
|+|+.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3456666666666633335556666666666666666655555666666666666666653
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=3.4e-09 Score=71.81 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=55.9
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcC
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQL 388 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 388 (453)
|+|++|++++|+++...+.+|..+++|++|++++|.+....+.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5699999999999977778999999999999999999977778999999999999999975
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=1.5e-08 Score=102.14 Aligned_cols=95 Identities=31% Similarity=0.509 Sum_probs=82.4
Q ss_pred hhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCC-CCC
Q 048417 324 ERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSL-KFL 402 (453)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L 402 (453)
+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.++.+++|+.|++++|.+.+.+|..+... .++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 3456778999999999998999999999999999999999999999999999999999999999999999887764 467
Q ss_pred CEEEccCCcccccCCC
Q 048417 403 NHLNLSNNNLTGKIPS 418 (453)
Q Consensus 403 ~~L~l~~n~l~~~~~~ 418 (453)
..+++.+|...+..|.
T Consensus 518 ~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 518 ASFNFTDNAGLCGIPG 533 (623)
T ss_pred ceEEecCCccccCCCC
Confidence 8899999976544444
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=1.3e-09 Score=104.96 Aligned_cols=218 Identities=21% Similarity=0.240 Sum_probs=94.4
Q ss_pred cccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccE
Q 048417 179 GSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQI 258 (453)
Q Consensus 179 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 258 (453)
..+.++..+++.+|.+..+...+..+++|++|++++|.|.+..+. ..++.|+.|++.+|.+... ..+..++.|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l---~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL---STLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccch---hhccchhhheeccCcchhc--cCCccchhhhc
Confidence 344444444444444444333344444555555555544332221 1233355555555554332 12333555555
Q ss_pred EEccCCcCCCCcc-cccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCC
Q 048417 259 VDLADNNLSGEVP-RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSK 337 (453)
Q Consensus 259 L~l~~~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 337 (453)
+++++|.+....+ . ...+.+++.+.+.++.+......... ..+..+++..
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~----------------------------~~l~~~~l~~ 217 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLL----------------------------KKLVLLSLLD 217 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHH----------------------------HHHHHhhccc
Confidence 5555555542222 1 34444444444444443333322111 1122224444
Q ss_pred CcCCCcCCccccCCC--CCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 048417 338 NNFSGKIPLEVTNLK--VLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 338 ~~l~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 415 (453)
|.++...+. .... +|+.+++++|++. ..++.+..+..+..+++..|++... +.+...+.+..+....|.+...
T Consensus 218 n~i~~~~~l--~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 292 (414)
T KOG0531|consen 218 NKISKLEGL--NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALS 292 (414)
T ss_pred ccceeccCc--ccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcch
Confidence 444321111 1111 2556666666555 3334445555566666665555422 2344444555555555544411
Q ss_pred ---C--CCCcccceeecccCCCCCc
Q 048417 416 ---I--PSSTQLQSFDASSFSGNDL 435 (453)
Q Consensus 416 ---~--~~~~~l~~L~~l~l~~n~l 435 (453)
. +.....+++...++.+||+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 293 EAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred hhhhccccccccccccccccccCcc
Confidence 1 1124445555555555553
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=7.4e-09 Score=89.57 Aligned_cols=206 Identities=21% Similarity=0.133 Sum_probs=134.8
Q ss_pred CCcccEEEcCCCcccccch-hhHhhcCCCeEEEEccCCcccCC---CcCccCCCCCcEEEccCCccccccccc---cccC
Q 048417 36 QKHLNYLDLSYSGIIGTIP-NIFWSSASQIYVLDLSFNQIHGQ---IPNLTNAAQLEVLSLGSNSFSIALPLI---SSYL 108 (453)
Q Consensus 36 ~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~ls~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L 108 (453)
..-++-+.+.++.+.+... ..+...+..++++||.+|.++.+ ..-+.+++.|+.|+++.|.+...+... ..+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3344566666666644333 23345678888999999888753 334678888999999999887655443 3588
Q ss_pred cEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCC--CCchhhhc-CCcccEEEcccCccC--CCCCcccccccc
Q 048417 109 IELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQG--ELPDCWMN-YQNLMILDLSNNKFT--GNLPISLGSLIS 183 (453)
Q Consensus 109 ~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~-l~~L~~L~l~~~~~~--~~~~~~l~~l~~ 183 (453)
+.|.+.+..+.....+. .+..+|+++.|+++.|.+.. ........ -+.++++...+|... ....+.-..+|+
T Consensus 124 ~~lVLNgT~L~w~~~~s---~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTS---SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred EEEEEcCCCCChhhhhh---hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 88988888877544433 34578999999999884331 11111111 235666776666443 111111223578
Q ss_pred ccEEEccCCcccccc--ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccc
Q 048417 184 LQSLHLRKNNLCGTI--HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYN 244 (453)
Q Consensus 184 L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 244 (453)
+..+.+.+|.+.... +....++.+-.|+++.+++.+.........++.|..|.+.++++.+
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 888888888776544 5566677777888888888776666666678888888888887644
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=1.4e-09 Score=104.68 Aligned_cols=111 Identities=27% Similarity=0.379 Sum_probs=91.0
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCc-cccCCCCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPE-SVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNH 404 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 404 (453)
-++.|+.|++++|++++ ...+..+++|++|+|++|++. .+|. ...++. |..|.+++|.++.. .++.++.+|+.
T Consensus 185 ll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~ 258 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYG 258 (1096)
T ss_pred HHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhc
Confidence 35779999999999974 337889999999999999998 6663 234455 99999999998833 67889999999
Q ss_pred EEccCCcccc--cCCCCcccceeecccCCCCCccCCCCCC
Q 048417 405 LNLSNNNLTG--KIPSSTQLQSFDASSFSGNDLCRAPLSG 442 (453)
Q Consensus 405 L~l~~n~l~~--~~~~~~~l~~L~~l~l~~n~l~~~~~~~ 442 (453)
||+++|-+.+ .+..+-.+..|++|++.|||+|=.|+++
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hR 298 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHR 298 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHH
Confidence 9999998874 2334467889999999999999888765
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=8e-10 Score=95.42 Aligned_cols=177 Identities=24% Similarity=0.155 Sum_probs=84.8
Q ss_pred cccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcCccCCCCCcEEEccCCc-cccc----cccccccCcEE
Q 048417 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPNLTNAAQLEVLSLGSNS-FSIA----LPLISSYLIEL 111 (453)
Q Consensus 38 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~~L~l~~~~-~~~~----~~~~~~~L~~L 111 (453)
+|+++||+...++...-..+...|..|+.|.+.++++.+ +...+.+..+|+.|+++.+. ++.. ....+++|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355666665555444444444555666666666665554 23344555556666665542 2221 12234556666
Q ss_pred ECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCC---CCCchhhhcCCcccEEEcccCcc-CCCCCccccccccccEE
Q 048417 112 DFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ---GELPDCWMNYQNLMILDLSNNKF-TGNLPISLGSLISLQSL 187 (453)
Q Consensus 112 ~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L 187 (453)
+++.|.+.......+...+ -++|..|+++|++-. ..+.--...+++|.+|+++++.. +...-..|.+++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 6666655543333222222 345556666655321 01111123456666666666532 21111224455666666
Q ss_pred EccCCccc--cccccccccCCCCEEeCCCCc
Q 048417 188 HLRKNNLC--GTIHSLENCTALMTLDVGENE 216 (453)
Q Consensus 188 ~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 216 (453)
.++.|-.. ...-.+...+++.+|++-|+.
T Consensus 344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 66655321 111334555666666666553
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.3e-09 Score=89.63 Aligned_cols=150 Identities=20% Similarity=0.152 Sum_probs=64.3
Q ss_pred CeEEEEccCCcccC--CCcCccCCCCCcEEEccCCccccccccc---cccCcEEECcCC-CCCCchhhhhhhhhcccCcc
Q 048417 63 QIYVLDLSFNQIHG--QIPNLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNN-SISGSIFHFICYRANELNKW 136 (453)
Q Consensus 63 ~L~~L~ls~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~L 136 (453)
+|+++|||+..++. ....+..|.+|+.|.+.++.+...+... -..|+.|+++.+ .++..... ..+.+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~---ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ---LLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH---HHHHhhhhH
Confidence 45555555555542 2333445555555555555554433222 124555555544 23322111 222345555
Q ss_pred cEEeccCCCCCCCCc-hhh-hcCCcccEEEcccCccC--C-CCCccccccccccEEEccCCcc-cc-ccccccccCCCCE
Q 048417 137 QILYLSGNFLQGELP-DCW-MNYQNLMILDLSNNKFT--G-NLPISLGSLISLQSLHLRKNNL-CG-TIHSLENCTALMT 209 (453)
Q Consensus 137 ~~L~l~~~~~~~~~~-~~l-~~l~~L~~L~l~~~~~~--~-~~~~~l~~l~~L~~L~l~~~~~-~~-~~~~~~~~~~L~~ 209 (453)
+.|+++.|......- ..+ .--..|+.|+++|+.-. . .+.....++|+|..||+++|.- .. ....+..++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 555555554431110 000 11234555555554221 0 0001123455555555555432 11 1133444555555
Q ss_pred EeCCCC
Q 048417 210 LDVGEN 215 (453)
Q Consensus 210 L~l~~~ 215 (453)
|.++.|
T Consensus 343 lSlsRC 348 (419)
T KOG2120|consen 343 LSLSRC 348 (419)
T ss_pred eehhhh
Confidence 555555
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=4.4e-08 Score=94.39 Aligned_cols=219 Identities=22% Similarity=0.295 Sum_probs=152.2
Q ss_pred ccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEE
Q 048417 180 SLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIV 259 (453)
Q Consensus 180 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 259 (453)
.+..++.+.++.|.+......+..+.+++.+++.+|.+...... .+.+++|+++++++|.+.... .+..+..|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc--hhhhhcchheecccccccccc--chhhccchhhh
Confidence 34555666677777766556677889999999999998653331 246889999999999997753 35566779999
Q ss_pred EccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCc
Q 048417 260 DLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNN 339 (453)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 339 (453)
++.+|.+. .+ ..+..+..++.+++..+.+...... . ...+.+++.+++.+|.
T Consensus 146 ~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~-------------------------~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 146 NLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVDIEND-------------------------E-LSELISLEELDLGGNS 197 (414)
T ss_pred eeccCcch-hc-cCCccchhhhcccCCcchhhhhhhh-------------------------h-hhhccchHHHhccCCc
Confidence 99999986 32 2344467777777776654433331 1 2446678888888887
Q ss_pred CCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCC--CCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCC
Q 048417 340 FSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMR--SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIP 417 (453)
Q Consensus 340 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 417 (453)
+.. ...+..+..+..+++..|.+...- .+..+. +|+.+++++|++. ..++.+..+..+..|++.+|.+. ...
T Consensus 198 i~~--i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~-~~~ 271 (414)
T KOG0531|consen 198 IRE--IEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS-NLE 271 (414)
T ss_pred hhc--ccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc-ccc
Confidence 752 223344455556678888776331 222333 3899999999998 44477888899999999999888 466
Q ss_pred CCcccceeecccCCCCCcc
Q 048417 418 SSTQLQSFDASSFSGNDLC 436 (453)
Q Consensus 418 ~~~~l~~L~~l~l~~n~l~ 436 (453)
.......+.++....|++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 272 GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccchHHHhccCcchhc
Confidence 6777778888888888743
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=1.5e-07 Score=80.61 Aligned_cols=95 Identities=18% Similarity=0.097 Sum_probs=56.9
Q ss_pred hcccCcccEEeccCCCCCCCCch-----hhhcCCcccEEEcccCccCCCCCc-----cccccccccEEEccCCcccccc-
Q 048417 130 ANELNKWQILYLSGNFLQGELPD-----CWMNYQNLMILDLSNNKFTGNLPI-----SLGSLISLQSLHLRKNNLCGTI- 198 (453)
Q Consensus 130 ~~~~~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~- 198 (453)
.++-|.|+.+++.+|++. ..+. .+..-..|+++.+..|.|...... .+..+.+|+.|++++|.++...
T Consensus 153 aa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 153 AADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred hccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 345788888888888876 3332 223335788888888877622111 1234567778888877765322
Q ss_pred ----ccccccCCCCEEeCCCCcccccCchHH
Q 048417 199 ----HSLENCTALMTLDVGENELVENIPTWI 225 (453)
Q Consensus 199 ----~~~~~~~~L~~L~l~~~~~~~~~~~~~ 225 (453)
..+..++.|+.|.+..|-+.......+
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHH
Confidence 344555666777777776654444333
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=3.6e-08 Score=95.30 Aligned_cols=127 Identities=29% Similarity=0.256 Sum_probs=64.6
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccE
Q 048417 107 YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQS 186 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 186 (453)
.|...+.++|.+. .+-..+.-++.++.|+|++|++++. +.+..++.|++|+++.|.+. .+|..=..-.+|+.
T Consensus 165 ~L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~ 236 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQL 236 (1096)
T ss_pred hHhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhhee
Confidence 4555555555443 2222223356666666666666532 24556666666666666665 33321111123666
Q ss_pred EEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcc
Q 048417 187 LHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242 (453)
Q Consensus 187 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 242 (453)
|.+++|.++. ...+.++.+|+.||++.|-+.+.-.-.....+..|+.|++.+|++
T Consensus 237 L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 237 LNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6666665542 234445566666666666554432222222345566666666654
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=1.6e-06 Score=74.48 Aligned_cols=189 Identities=15% Similarity=0.088 Sum_probs=122.8
Q ss_pred cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhh-------------hcCCcccEEEcccCccC
Q 048417 105 SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCW-------------MNYQNLMILDLSNNKFT 171 (453)
Q Consensus 105 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~l~~~~~~ 171 (453)
+|+|+..+++.|.+....+..+...+++...|.+|.+++|.+-..-...+ ..-+.|+++...+|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 46777888888888777778888888888899999998887652111111 22477889998888876
Q ss_pred CCCCcc-----ccccccccEEEccCCccccc--c----ccccccCCCCEEeCCCCcccccCchHH---HhccCcceEEEe
Q 048417 172 GNLPIS-----LGSLISLQSLHLRKNNLCGT--I----HSLENCTALMTLDVGENELVENIPTWI---RERFSRIVVLIL 237 (453)
Q Consensus 172 ~~~~~~-----l~~l~~L~~L~l~~~~~~~~--~----~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l 237 (453)
..+.. +..-..|..+.+..|.|..- . ..+..+.+|+.||+..|.++....... ...++.|+.|.+
T Consensus 171 -ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 171 -NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred -cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 33322 22224688888888877532 1 334567889999999988765433222 234567888888
Q ss_pred cCCcccccCchhh------cCCCCccEEEccCCcCCCCccc-------ccccccccceeccccCcchhhh
Q 048417 238 RSNKFYNLLPKEL------CDLAFLQIVDLADNNLSGEVPR-------CIHNLRAMVTMNSHAGKAIQYQ 294 (453)
Q Consensus 238 ~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~L~~l~i~~~~~~~~~ 294 (453)
..|-.+......+ ...++|..|-..+|.+.+.+.. .-.++|-|..+.+.++.+....
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 8887765443322 1346778888877776543322 1245667777777776654433
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=1.5e-06 Score=75.63 Aligned_cols=225 Identities=20% Similarity=0.220 Sum_probs=123.6
Q ss_pred cccEEEcccCccCCCCCc-ccc-ccccccEEEccCCcccccc---ccccccCCCCEEeCCCCcccccCchHHHhccCcce
Q 048417 159 NLMILDLSNNKFTGNLPI-SLG-SLISLQSLHLRKNNLCGTI---HSLENCTALMTLDVGENELVENIPTWIRERFSRIV 233 (453)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~-~l~-~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 233 (453)
-++.+.+.++.+...... .|+ ....++.+++.+|.+..+. ..+..++++++|+++.|.+...+.. ......+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceE
Confidence 344455556655422111 122 3455777777777776554 3456677777777777766432221 112355677
Q ss_pred EEEecCCccccc-CchhhcCCCCccEEEccCCcCCC--Ccccccccc-cccceeccccCcchhhhhhhhhccchhhhhhh
Q 048417 234 VLILRSNKFYNL-LPKELCDLAFLQIVDLADNNLSG--EVPRCIHNL-RAMVTMNSHAGKAIQYQFLLYASRAPLIATLL 309 (453)
Q Consensus 234 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~-~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 309 (453)
+|.+.+..+.-. ....+..++.+++|.++.|.... ....+...+ +.+++++...|....+...
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~------------- 191 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK------------- 191 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH-------------
Confidence 777766554211 12234456666777776663321 111122222 2444444444432222211
Q ss_pred hhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcC-CccccCCCCCcEEEcCCccCCCCC-CccccCCCCCCEEEcCCCc
Q 048417 310 EDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKI-PLEVTNLKVLQSVNLSNNFFTGRI-PESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~ 387 (453)
......+|++..+.+..|.+..+. ......+|.+.-|+++.+++.+.. ...+..+++|+.|.+++++
T Consensus 192 -----------~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 192 -----------NKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred -----------HhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 111234677888888888765332 233445677778889888887322 2567888999999999998
Q ss_pred CCCCCCc------cccCCCCCCEEEcc
Q 048417 388 LSGEIPQ------SMSSLKFLNHLNLS 408 (453)
Q Consensus 388 l~~~~~~------~l~~l~~L~~L~l~ 408 (453)
+.+.+.. .+..+++++.|+=+
T Consensus 261 l~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 261 LSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccccccCCcceEEEEeeccceEEecCc
Confidence 8754321 23457777777654
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.15 E-value=7.5e-08 Score=87.30 Aligned_cols=293 Identities=18% Similarity=0.123 Sum_probs=129.7
Q ss_pred CeEEEEccCCcccC---CCcCccCCCCCcEEEccCCcccc-----ccccccccCcEEECcCC-CCCCchhhhhhhhhccc
Q 048417 63 QIYVLDLSFNQIHG---QIPNLTNAAQLEVLSLGSNSFSI-----ALPLISSYLIELDFSNN-SISGSIFHFICYRANEL 133 (453)
Q Consensus 63 ~L~~L~ls~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~ 133 (453)
.|+.|.+++++-.. .-....+++++++|++.+|.... .....+++++.+++..| .++....+.++ ..+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la---~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA---EGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH---Hhh
Confidence 46666666664322 12223455666666666654221 11222445666666553 33332222222 246
Q ss_pred CcccEEeccCCCCC-C-CCchhhhcCCcccEEEcccCccCCCCCccc----cccccccEEEccCCcc-cccc--cccccc
Q 048417 134 NKWQILYLSGNFLQ-G-ELPDCWMNYQNLMILDLSNNKFTGNLPISL----GSLISLQSLHLRKNNL-CGTI--HSLENC 204 (453)
Q Consensus 134 ~~L~~L~l~~~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~-~~~~--~~~~~~ 204 (453)
++|++++++.+.-. + -+...+.++..++.+.+.||.=. ..+.+ ..++.+.++++.+|.. +... ..-..+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 66666666665322 1 01122344445555555544211 00111 2233444555444422 2111 222345
Q ss_pred CCCCEEeCCCCc-ccccCchHHHhccCcceEEEecCCcc-cccCchhh-cCCCCccEEEccCCcCCCCcccccccccccc
Q 048417 205 TALMTLDVGENE-LVENIPTWIRERFSRIVVLILRSNKF-YNLLPKEL-CDLAFLQIVDLADNNLSGEVPRCIHNLRAMV 281 (453)
Q Consensus 205 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 281 (453)
..++.++.+++. +.+.....+.+..++|+.+.+..|.. +......+ .+++.|+.+++.++...... .+
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL------- 364 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TL------- 364 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hH-------
Confidence 556666666553 22223333344555666666665542 11111111 23455555555554432000 00
Q ss_pred eeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC-CCcC----CccccCCCCCcE
Q 048417 282 TMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF-SGKI----PLEVTNLKVLQS 356 (453)
Q Consensus 282 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~----~~~~~~~~~L~~ 356 (453)
......++.|+.+.++++.. ++.. ...-..+..|+.
T Consensus 365 ---------------------------------------~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~ 405 (483)
T KOG4341|consen 365 ---------------------------------------ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEV 405 (483)
T ss_pred ---------------------------------------hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccce
Confidence 01112355566666666543 1110 111123456677
Q ss_pred EEcCCccCCC-CCCccccCCCCCCEEEcCCCcCCC--CCCccccCCCCCCEEEcc
Q 048417 357 VNLSNNFFTG-RIPESVGTMRSLESIDFSLNQLSG--EIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 357 L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~ 408 (453)
+.++++.... ...+.+..+++|+.+++.+++-.. .+...-..+|++++..+.
T Consensus 406 lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 406 LELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred eeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 7777765442 223445666777777777665321 122333456666655543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=2.1e-06 Score=53.12 Aligned_cols=37 Identities=43% Similarity=0.719 Sum_probs=22.2
Q ss_pred CCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccc
Q 048417 376 RSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 376 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 413 (453)
++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 44445666666666666666666
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.09 E-value=4.3e-06 Score=68.76 Aligned_cols=85 Identities=16% Similarity=0.302 Sum_probs=54.7
Q ss_pred CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccc--ccCCCCcccceeeccc
Q 048417 352 KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT--GKIPSSTQLQSFDASS 429 (453)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~ 429 (453)
.....+++++|.+. .+ ..|..++.|..|.+..|+|+.+.|..-..+|+|+.|.+.+|.|. +.+..+..+++|+.+.
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34556677777665 22 24566777777777777777555555555667777777777666 3455556666777777
Q ss_pred CCCCCccCC
Q 048417 430 FSGNDLCRA 438 (453)
Q Consensus 430 l~~n~l~~~ 438 (453)
+-+||++..
T Consensus 120 ll~Npv~~k 128 (233)
T KOG1644|consen 120 LLGNPVEHK 128 (233)
T ss_pred ecCCchhcc
Confidence 777766544
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=4.9e-06 Score=84.08 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=95.6
Q ss_pred CCcEEEccCCcccc-cc----ccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 86 QLEVLSLGSNSFSI-AL----PLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 86 ~L~~L~l~~~~~~~-~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
+|++|++++...-. .+ ...+|+|+.|.+.+-.+.... +.....++|+|..||++++.++.. ..++.+++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 67777777654322 11 223678888888877665433 334445788888888888888733 557778888
Q ss_pred cEEEcccCccCC-CCCccccccccccEEEccCCcccccc-------ccccccCCCCEEeCCCCcccccCchHHHhccCcc
Q 048417 161 MILDLSNNKFTG-NLPISLGSLISLQSLHLRKNNLCGTI-------HSLENCTALMTLDVGENELVENIPTWIRERFSRI 232 (453)
Q Consensus 161 ~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 232 (453)
+.|.+.+=.+.. ..-..+..+.+|+.||++..+..... +.-..+++|+.||.+++.+.......+...-++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 888887766652 11123556788888888876543322 2234578888888888887766665555555666
Q ss_pred eEEEec
Q 048417 233 VVLILR 238 (453)
Q Consensus 233 ~~L~l~ 238 (453)
+.+..-
T Consensus 278 ~~i~~~ 283 (699)
T KOG3665|consen 278 QQIAAL 283 (699)
T ss_pred hhhhhh
Confidence 655543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=3.2e-07 Score=70.33 Aligned_cols=84 Identities=27% Similarity=0.452 Sum_probs=64.0
Q ss_pred CcccEEecCCCcCCCcCCcccc-CCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVT-NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 406 (453)
..|+..++++|.+. ..|..|. .++.++.|++++|.+. .+|+.+..++.|+.|+++.|.+. ..|+.+..+.++-.|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34666778888776 4554444 4567888888888888 77777888888888888888888 6677777788888888
Q ss_pred ccCCcccc
Q 048417 407 LSNNNLTG 414 (453)
Q Consensus 407 l~~n~l~~ 414 (453)
..+|.+..
T Consensus 130 s~~na~~e 137 (177)
T KOG4579|consen 130 SPENARAE 137 (177)
T ss_pred CCCCcccc
Confidence 88887763
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=1.2e-05 Score=81.36 Aligned_cols=134 Identities=19% Similarity=0.119 Sum_probs=75.4
Q ss_pred CcccEEEccCCcCC-CCCCccc-cCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEE
Q 048417 13 FQLATLGLRHCHLG-SRFPSWL-YSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 90 (453)
Q Consensus 13 ~~L~~L~L~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L 90 (453)
.+|++||+++...- ..++..+ .-+|.|++|.+++-.+...--..+..++++|+.||+|+++++.. .++.++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 35777777775542 2223333 35678888888776653333334456778888888888877754 566677777777
Q ss_pred EccCCcccccc--c--cccccCcEEECcCCCCCCch--hhhhhhhhcccCcccEEeccCCCCC
Q 048417 91 SLGSNSFSIAL--P--LISSYLIELDFSNNSISGSI--FHFICYRANELNKWQILYLSGNFLQ 147 (453)
Q Consensus 91 ~l~~~~~~~~~--~--~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~ 147 (453)
.+.+-.+.... . ..+++|+.||+|........ .....+.-..+|+|+.||++++.++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 77665554311 1 12456666666665433222 1111111123566666666665554
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.5e-05 Score=49.25 Aligned_cols=37 Identities=35% Similarity=0.584 Sum_probs=22.6
Q ss_pred CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 352 KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
++|+.|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 45555666667777777766665
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.81 E-value=2.5e-06 Score=65.52 Aligned_cols=84 Identities=26% Similarity=0.366 Sum_probs=49.4
Q ss_pred ccCcccEEeccCCCCCCCCchhh-hcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEE
Q 048417 132 ELNKWQILYLSGNFLQGELPDCW-MNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTL 210 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 210 (453)
....|...++++|.+. .+|..| .+++.++++++++|.+. .+|..+..++.|+.|+++.|.+...++.+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 3445555666666665 334333 33456666666666666 45555666666666666666666555555555555556
Q ss_pred eCCCCcc
Q 048417 211 DVGENEL 217 (453)
Q Consensus 211 ~l~~~~~ 217 (453)
+..++.+
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 6555554
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.77 E-value=1.3e-06 Score=79.37 Aligned_cols=266 Identities=14% Similarity=0.092 Sum_probs=134.9
Q ss_pred CcccEEEcccCccCCCCC--ccccccccccEEEccCCcc-cccc--ccccccCCCCEEeCCCC-cccccCchHHHhccCc
Q 048417 158 QNLMILDLSNNKFTGNLP--ISLGSLISLQSLHLRKNNL-CGTI--HSLENCTALMTLDVGEN-ELVENIPTWIRERFSR 231 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~-~~~~--~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~ 231 (453)
..|+.|.++|+.-....+ .....+|+++.|.+.++.. ++.. ..-..|..++++++..| .++......+.+.+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 356777777764331111 1223567777777766642 2211 22345667777777774 4444444445566777
Q ss_pred ceEEEecCCcc-ccc-CchhhcCCCCccEEEccCCcCCCCccccc----ccccccceeccccCcchhhhhhhhhccchhh
Q 048417 232 IVVLILRSNKF-YNL-LPKELCDLAFLQIVDLADNNLSGEVPRCI----HNLRAMVTMNSHAGKAIQYQFLLYASRAPLI 305 (453)
Q Consensus 232 L~~L~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~ 305 (453)
|++++++-|+. .+. +...+..++.++.+..+||.-. ..+.+ ..+..+..+++..|..++....
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~--------- 286 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDL--------- 286 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHH---------
Confidence 77777776653 221 1223445555666666654311 11111 2223344444444432222221
Q ss_pred hhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC-CCcCCccc-cCCCCCcEEEcCCccC-CCCCCccc-cCCCCCCEE
Q 048417 306 ATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF-SGKIPLEV-TNLKVLQSVNLSNNFF-TGRIPESV-GTMRSLESI 381 (453)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~-~~~~~L~~L~l~~n~~-~~~~~~~l-~~l~~L~~L 381 (453)
...-..+..|+.++.+++.- ++..-..+ .++++|+.|-+++|+. ++.-...+ .+++.|+.+
T Consensus 287 ---------------~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 287 ---------------WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred ---------------HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 11112355677777766532 22222222 3567788888887763 22211222 456778888
Q ss_pred EcCCCcCCCC--CCccccCCCCCCEEEccCCcccccC------CCCcccceeecccCCCCC-ccCCCCC--CCCCCCcc
Q 048417 382 DFSLNQLSGE--IPQSMSSLKFLNHLNLSNNNLTGKI------PSSTQLQSFDASSFSGND-LCRAPLS--GNCSEHVS 449 (453)
Q Consensus 382 ~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~------~~~~~l~~L~~l~l~~n~-l~~~~~~--~~c~~~~~ 449 (453)
++.++..... +-+.-..++.|+.+.+++|...... .....+..|..++++++| +++.-++ ..|+.+++
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 8877754411 2223345777888888877644221 122566777778887777 4443322 24555444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=6.8e-05 Score=61.86 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=34.4
Q ss_pred ccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC--CCcCccCCCCCcEEEc
Q 048417 15 LATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG--QIPNLTNAAQLEVLSL 92 (453)
Q Consensus 15 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~--~~~~l~~~~~L~~L~l 92 (453)
...+||+.|.+... +.|..+++|.+|.+++|+| ..+...+...+++|..|.+.+|.+.. ....+..+++|++|.+
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrI-t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRI-TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcc-eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 33444444444211 2234444455555555554 22222222334445555555544432 2334444444554444
Q ss_pred cCCccc
Q 048417 93 GSNSFS 98 (453)
Q Consensus 93 ~~~~~~ 98 (453)
-+|.+.
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 444433
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00015 Score=67.84 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=27.8
Q ss_pred cccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCC
Q 048417 181 LISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240 (453)
Q Consensus 181 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 240 (453)
+.++..|++++|.++.++ .-.++|+.|.+++|.-....|..+ .++|+.|.+.+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 455666677666555444 122356666666654333334322 135555555555
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00031 Score=65.79 Aligned_cols=54 Identities=15% Similarity=0.277 Sum_probs=24.7
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCC
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN 72 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~ 72 (453)
|+++++|++++|.++. +|. --.+|++|.++++.-...+|..+ .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 4555566666555422 231 11245555555543223344332 134555555555
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.60 E-value=4.8e-05 Score=65.42 Aligned_cols=93 Identities=23% Similarity=0.193 Sum_probs=49.6
Q ss_pred cccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCC--cccccchhhHhhcCCCeEEEEccCCcccC--CC
Q 048417 3 LKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYS--GIIGTIPNIFWSSASQIYVLDLSFNQIHG--QI 78 (453)
Q Consensus 3 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~ls~~~~~~--~~ 78 (453)
|++....-.+..|+.+++.++.++.. ..|-.+++|+.|.++.| .+.+.++.-. ..+++|+++++++|++.. ..
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccccccc
Confidence 33444445555666666666655442 22444566666666666 3333333332 344666666666666653 33
Q ss_pred cCccCCCCCcEEEccCCccc
Q 048417 79 PNLTNAAQLEVLSLGSNSFS 98 (453)
Q Consensus 79 ~~l~~~~~L~~L~l~~~~~~ 98 (453)
..+..+.+|..|++.+|...
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcchhhhhcccCCcc
Confidence 34445555666666555443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=5.6e-06 Score=71.44 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=77.0
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCC-ccccCCCCCCE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIP-QSMSSLKFLNH 404 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~ 404 (453)
.+.+.+.|++.+|++.++ ..+..++.|+.|.|+-|.++.. ..+..|++|++|+|..|.|.+... +.+.++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 356678899999988743 2356789999999999999844 347889999999999999984322 46778999999
Q ss_pred EEccCCcccccCC-C-----CcccceeecccC
Q 048417 405 LNLSNNNLTGKIP-S-----STQLQSFDASSF 430 (453)
Q Consensus 405 L~l~~n~l~~~~~-~-----~~~l~~L~~l~l 430 (453)
|+|..|+-.+.-. + +..+|+|++||-
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 9999998775322 1 255778887764
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00065 Score=58.64 Aligned_cols=89 Identities=17% Similarity=0.256 Sum_probs=54.9
Q ss_pred hhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCc--cCCCCCCccccCCCCCCEEEcCCCcCCC-CCCccccCCC
Q 048417 324 ERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNN--FFTGRIPESVGTMRSLESIDFSLNQLSG-EIPQSMSSLK 400 (453)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~ 400 (453)
......|+.+++.+.+++ .-..+..+++|+.|.++.| .+.+.++-....+|+|+++++++|++.. .....+..+.
T Consensus 39 ~d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 344556666766666654 2234566778888888888 4433332223445888888888887762 1112344566
Q ss_pred CCCEEEccCCcccc
Q 048417 401 FLNHLNLSNNNLTG 414 (453)
Q Consensus 401 ~L~~L~l~~n~l~~ 414 (453)
+|.+|++.+|..+.
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 78888888887664
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.92 E-value=0.0042 Score=49.02 Aligned_cols=84 Identities=10% Similarity=0.100 Sum_probs=39.9
Q ss_pred CCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCC
Q 048417 8 NWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQL 87 (453)
Q Consensus 8 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L 87 (453)
+|..+.+|+.+.+.. .+......+|..+++|+.+.+..+ + ..++...|..++.++.+.+.++...-....+..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-L-TSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-T-SCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-c-cccceeeeecccccccccccccccccccccccccccc
Confidence 456666777777754 344555566777777777777653 4 4445555566666777777552222222334445566
Q ss_pred cEEEccC
Q 048417 88 EVLSLGS 94 (453)
Q Consensus 88 ~~L~l~~ 94 (453)
+.+.+..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 6665543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=5.8e-05 Score=65.36 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=71.4
Q ss_pred CCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC---cccceee
Q 048417 350 NLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS---TQLQSFD 426 (453)
Q Consensus 350 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~l~~L~ 426 (453)
.+.+.+.|+..||.+.+. .....|+.|+.|.|+-|.|+.. .-+..+.+|++|||..|.|. +++++ ..+++|+
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 456789999999999843 3356799999999999999954 45888999999999999998 45554 8899999
Q ss_pred cccCCCCCccCCCC
Q 048417 427 ASSFSGNDLCRAPL 440 (453)
Q Consensus 427 ~l~l~~n~l~~~~~ 440 (453)
.|-|-.||=||.-.
T Consensus 92 ~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 92 TLWLDENPCCGEAG 105 (388)
T ss_pred hHhhccCCcccccc
Confidence 99999999776643
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.62 E-value=0.00048 Score=68.19 Aligned_cols=109 Identities=23% Similarity=0.079 Sum_probs=53.0
Q ss_pred CCCcccEEEcCCCccccc-chhhHhhcCCCeEEEEccCC--cccC----CCcCccCCCCCcEEEccCCc-cccccc----
Q 048417 35 SQKHLNYLDLSYSGIIGT-IPNIFWSSASQIYVLDLSFN--QIHG----QIPNLTNAAQLEVLSLGSNS-FSIALP---- 102 (453)
Q Consensus 35 ~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~ls~~--~~~~----~~~~l~~~~~L~~L~l~~~~-~~~~~~---- 102 (453)
.++.|+.+.+..+.-... .-..+...+++|++|+++++ .+.. .......+.+|+.|+++++. ++....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666665532122 11222355666666666652 1111 11122334566666666665 332211
Q ss_pred cccccCcEEECcCCC-CCCchhhhhhhhhcccCcccEEeccCCCC
Q 048417 103 LISSYLIELDFSNNS-ISGSIFHFICYRANELNKWQILYLSGNFL 146 (453)
Q Consensus 103 ~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 146 (453)
..++.|++|.+.++. ++......+. ..++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~---~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIA---ERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHH---HhcCcccEEeeecCcc
Confidence 124566666666555 4443333333 3566677777776654
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.61 E-value=0.0057 Score=48.25 Aligned_cols=57 Identities=14% Similarity=0.183 Sum_probs=21.1
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEcc
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 190 (453)
++.+|+.+.+.. .+.......|..+..|+.+.+.++ +.......|..+.+++.+.+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344555555543 233223334455555555555543 332333344444455555554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.55 E-value=0.00029 Score=69.74 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=34.3
Q ss_pred cccCCCCEEeCCCCc-ccccCchHHHhccCcceEEEecCCc-ccccC-chhhcCCCCccEEEccCCcC
Q 048417 202 ENCTALMTLDVGENE-LVENIPTWIRERFSRIVVLILRSNK-FYNLL-PKELCDLAFLQIVDLADNNL 266 (453)
Q Consensus 202 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~~ 266 (453)
..+.+++.++++.+. +++..-..+...+++|+.|.+.+|. +++.. ......++.|++|+++++..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 444566666666665 4444444444445666666655555 33221 22234456666666666544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.49 E-value=0.015 Score=29.74 Aligned_cols=11 Identities=64% Similarity=0.776 Sum_probs=4.2
Q ss_pred CEEEccCCccc
Q 048417 403 NHLNLSNNNLT 413 (453)
Q Consensus 403 ~~L~l~~n~l~ 413 (453)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=0.0053 Score=51.01 Aligned_cols=82 Identities=16% Similarity=0.064 Sum_probs=51.6
Q ss_pred cccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchh-hHhhcCCCeEEEEccCC-cccC-CCcCccCCCCCcEE
Q 048417 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPN-IFWSSASQIYVLDLSFN-QIHG-QIPNLTNAAQLEVL 90 (453)
Q Consensus 14 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~ls~~-~~~~-~~~~l~~~~~L~~L 90 (453)
.++.+|-+++.+..+.-..+.+++.++.|.+.++.-.+.-.- -+.+..++|+.|++++| +|+. ...-+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467778877777766666777777888888877754232221 12234567788888866 5554 44445566666666
Q ss_pred EccCC
Q 048417 91 SLGSN 95 (453)
Q Consensus 91 ~l~~~ 95 (453)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.41 E-value=0.00056 Score=66.37 Aligned_cols=114 Identities=25% Similarity=0.250 Sum_probs=55.1
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhc----ccCcccEEeccCCCCCCCC----chhhhcCCc-ccEEEcccCccCCCCC--
Q 048417 107 YLIELDFSNNSISGSIFHFICYRAN----ELNKWQILYLSGNFLQGEL----PDCWMNYQN-LMILDLSNNKFTGNLP-- 175 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~l~~l~~-L~~L~l~~~~~~~~~~-- 175 (453)
.++.++++.|.+.......+...+. ...++++|.+.++.++... ...+..... +..+++..|.+.+...
T Consensus 173 ~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~ 252 (478)
T KOG4308|consen 173 HLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEK 252 (478)
T ss_pred chhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHH
Confidence 4455555555544333333333322 2455666666666554111 111222233 4445666665543211
Q ss_pred --cccccc-ccccEEEccCCcccccc-----ccccccCCCCEEeCCCCccccc
Q 048417 176 --ISLGSL-ISLQSLHLRKNNLCGTI-----HSLENCTALMTLDVGENELVEN 220 (453)
Q Consensus 176 --~~l~~l-~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~ 220 (453)
+.+..+ +.++.+++..|.++.-. +.+..++.++.+.++.|.+...
T Consensus 253 L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 253 LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 122233 45666777777665322 4445566777777777766543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.27 E-value=0.018 Score=29.38 Aligned_cols=17 Identities=47% Similarity=0.770 Sum_probs=7.7
Q ss_pred ccEEEcCCCcccccchhh
Q 048417 39 LNYLDLSYSGIIGTIPNI 56 (453)
Q Consensus 39 L~~L~l~~~~~~~~~~~~ 56 (453)
|++|++++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444555555442 44433
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.26 E-value=0.00086 Score=65.12 Aligned_cols=40 Identities=20% Similarity=0.046 Sum_probs=18.3
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCC
Q 048417 107 YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFL 146 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 146 (453)
.+++|++..|.++......+...+...+.++.++++.|.+
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 3444444444444444444444444444444444444443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.48 E-value=0.05 Score=25.73 Aligned_cols=13 Identities=62% Similarity=0.710 Sum_probs=5.4
Q ss_pred CCCEEEccCCccc
Q 048417 401 FLNHLNLSNNNLT 413 (453)
Q Consensus 401 ~L~~L~l~~n~l~ 413 (453)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=0.014 Score=48.67 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=57.8
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCC-cccc-CCCCCCEEEcCCC-cCCCCCCccccCCCCCCEEE
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIP-ESVG-TMRSLESIDFSLN-QLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~-~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~ 406 (453)
++.+|-++..|..+--.-+..+++++.|.+.+|..-+... +.++ -.++|+.|++++| +|++....++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 6777777777665555567778888888888886544322 2222 3578889999888 47777777888888888888
Q ss_pred ccCCc
Q 048417 407 LSNNN 411 (453)
Q Consensus 407 l~~n~ 411 (453)
+.+=.
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 87543
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.56 E-value=0.0035 Score=53.16 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=69.1
Q ss_pred CccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccce
Q 048417 345 PLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQS 424 (453)
Q Consensus 345 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~ 424 (453)
...+......+.|+++.|++. ....-|+.++.|.++|++.|++. -.|+.+.+...+..+++++|..+..+-...+.+.
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 345566677888888888776 45556777788888888888887 6777777788888888888888865555688888
Q ss_pred eecccCCCCCcc
Q 048417 425 FDASSFSGNDLC 436 (453)
Q Consensus 425 L~~l~l~~n~l~ 436 (453)
+++++..+|+++
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888888853
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.40 E-value=0.018 Score=49.01 Aligned_cols=87 Identities=15% Similarity=0.022 Sum_probs=58.2
Q ss_pred CcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCc
Q 048417 9 WIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLE 88 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~ 88 (453)
+......+.||++.+.+-. ....|+.+..|..++++.+++ ...|.++ +....++.+++.+|..+..+......++++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~-~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQI-KFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhH-hhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 3446667777777776632 345566677777777777777 6667666 556667777777777776666667777777
Q ss_pred EEEccCCccc
Q 048417 89 VLSLGSNSFS 98 (453)
Q Consensus 89 ~L~l~~~~~~ 98 (453)
++++..+.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7776666543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.60 E-value=0.49 Score=25.06 Aligned_cols=13 Identities=54% Similarity=0.690 Sum_probs=5.4
Q ss_pred CCCEEEcCCCcCC
Q 048417 377 SLESIDFSLNQLS 389 (453)
Q Consensus 377 ~L~~L~l~~n~l~ 389 (453)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.60 E-value=0.49 Score=25.06 Aligned_cols=13 Identities=54% Similarity=0.690 Sum_probs=5.4
Q ss_pred CCCEEEcCCCcCC
Q 048417 377 SLESIDFSLNQLS 389 (453)
Q Consensus 377 ~L~~L~l~~n~l~ 389 (453)
+|+.|++++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.13 E-value=0.7 Score=23.92 Aligned_cols=15 Identities=40% Similarity=0.457 Sum_probs=6.8
Q ss_pred CcccEEEcCCCcccc
Q 048417 37 KHLNYLDLSYSGIIG 51 (453)
Q Consensus 37 ~~L~~L~l~~~~~~~ 51 (453)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455555555555533
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.92 E-value=0.99 Score=23.97 Aligned_cols=19 Identities=47% Similarity=0.649 Sum_probs=12.5
Q ss_pred CCCCEEEccCCcccccCCCC
Q 048417 400 KFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~ 419 (453)
+.|++|++++|+++ .+|++
T Consensus 2 ~~L~~L~vs~N~Lt-~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPEL 20 (26)
T ss_pred cccceeecCCCccc-cCccc
Confidence 35777777777777 45543
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.11 E-value=1.7 Score=23.11 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=8.8
Q ss_pred CCCCEEEccCCccc
Q 048417 400 KFLNHLNLSNNNLT 413 (453)
Q Consensus 400 ~~L~~L~l~~n~l~ 413 (453)
.+|++|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.48 E-value=2.1 Score=23.16 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=11.9
Q ss_pred cCcEEECcCCCCCCchhhhhh
Q 048417 107 YLIELDFSNNSISGSIFHFIC 127 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~ 127 (453)
+|++|++++|.+...+...++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHH
Confidence 456666666666554444443
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.84 E-value=58 Score=31.63 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=35.2
Q ss_pred CCcEEEcCCccCCCCCC---ccccCCCCCCEEEcCCCcCCC----CCCccccCCCCCCEEEccCCccc
Q 048417 353 VLQSVNLSNNFFTGRIP---ESVGTMRSLESIDFSLNQLSG----EIPQSMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 353 ~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~ 413 (453)
-+..+.++.|....... .....-+.+.+|++++|.... .+|..++.-.+++.+..+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 35666666666552111 223455667777777776653 24455555556777777766655
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.41 E-value=1.7 Score=42.28 Aligned_cols=64 Identities=27% Similarity=0.254 Sum_probs=40.9
Q ss_pred CCCCCcEEEcCCccCCCCC--CccccCCCCCCEEEcCCC--cCCCCCCcccc--CCCCCCEEEccCCccccc
Q 048417 350 NLKVLQSVNLSNNFFTGRI--PESVGTMRSLESIDFSLN--QLSGEIPQSMS--SLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 350 ~~~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n--~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~ 415 (453)
+.+.+..+++++|++.... ...-..-|+|..|+|++| .+... ..+. ....|++|.+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 4677888889988876321 122244688899999988 33321 1222 233588888888888754
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=55.51 E-value=7.2 Score=20.51 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=6.3
Q ss_pred CcccEEEccCCc
Q 048417 13 FQLATLGLRHCH 24 (453)
Q Consensus 13 ~~L~~L~L~~~~ 24 (453)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.92 E-value=8.9 Score=37.60 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=50.5
Q ss_pred hhcCcccEEecCCCcCCCc--CCccccCCCCCcEEEcCCc--cCCCCCCccccC--CCCCCEEEcCCCcCCCCCCc----
Q 048417 325 RTLNLVRIIDFSKNNFSGK--IPLEVTNLKVLQSVNLSNN--FFTGRIPESVGT--MRSLESIDFSLNQLSGEIPQ---- 394 (453)
Q Consensus 325 ~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~n--~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~---- 394 (453)
.+.+.+..+++++|++... ....-...|.|+.|+|++| .+. .. .++.. ...|++|-+.||++......
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~-~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SE-SELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-ch-hhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 4567788999999988632 1222234689999999999 333 21 22322 33499999999999855331
Q ss_pred ---cccCCCCCCEEE
Q 048417 395 ---SMSSLKFLNHLN 406 (453)
Q Consensus 395 ---~l~~l~~L~~L~ 406 (453)
.-+-+|+|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 112466666554
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.35 E-value=44 Score=39.97 Aligned_cols=31 Identities=26% Similarity=0.256 Sum_probs=16.0
Q ss_pred cCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 359 LSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 359 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
|++|+|....+..|..+++|+.|+|++|++.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4555555222344455555666666555543
Done!