Query 048417
Match_columns 453
No_of_seqs 185 out of 2752
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 16:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.2E-48 2.5E-52 398.9 29.1 431 11-446 267-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-45 5.6E-50 381.2 26.7 429 2-440 213-721 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2E-43 6.9E-48 357.5 29.4 427 5-445 49-564 (606)
4 3t6q_A CD180 antigen; protein- 100.0 2.9E-41 1E-45 341.7 30.4 426 5-441 27-541 (606)
5 4eco_A Uncharacterized protein 100.0 1.1E-41 3.8E-46 344.9 27.0 404 13-445 81-609 (636)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-40 4.2E-45 337.1 32.2 417 6-434 49-556 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 2.5E-40 8.6E-45 339.2 31.7 423 8-434 44-595 (680)
8 2z63_A TOLL-like receptor 4, v 100.0 1.1E-40 3.7E-45 335.2 27.5 258 176-448 276-538 (570)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-39 5.2E-44 333.4 31.5 436 5-449 19-564 (680)
10 4ecn_A Leucine-rich repeat pro 100.0 7.9E-40 2.7E-44 336.9 28.7 403 13-445 323-849 (876)
11 4eco_A Uncharacterized protein 100.0 2E-40 6.7E-45 335.7 23.9 350 29-414 198-601 (636)
12 3vq2_A TLR4, TOLL-like recepto 100.0 5.9E-40 2E-44 332.1 26.3 419 5-439 26-537 (606)
13 4ecn_A Leucine-rich repeat pro 100.0 1.4E-39 4.9E-44 335.0 23.4 370 29-434 440-862 (876)
14 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-39 8.6E-44 338.3 23.4 252 182-435 266-538 (844)
15 2z81_A CD282 antigen, TOLL-lik 100.0 6.1E-39 2.1E-43 320.9 25.0 394 5-434 20-508 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 9E-39 3.1E-43 317.4 25.1 390 4-435 14-480 (520)
17 2z63_A TOLL-like receptor 4, v 100.0 3.6E-38 1.2E-42 316.8 26.8 428 5-450 22-523 (570)
18 3v47_A TOLL-like receptor 5B a 100.0 1E-37 3.5E-42 304.7 28.6 362 13-423 30-418 (455)
19 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-38 1E-42 330.3 23.4 426 11-447 22-528 (844)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-36 4.1E-41 304.7 28.3 382 14-434 32-508 (562)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-36 4.8E-41 303.8 24.9 398 3-419 40-516 (549)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-36 4.5E-41 301.8 20.1 374 5-417 37-485 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.5E-35 2.9E-39 291.2 25.9 367 5-417 46-514 (562)
24 1o6v_A Internalin A; bacterial 100.0 4.1E-34 1.4E-38 279.6 30.0 345 12-415 45-390 (466)
25 3v47_A TOLL-like receptor 5B a 100.0 4.7E-35 1.6E-39 285.8 22.7 349 3-393 44-412 (455)
26 4g8a_A TOLL-like receptor 4; l 100.0 7.2E-34 2.5E-38 289.2 28.7 419 13-445 52-584 (635)
27 1jl5_A Outer protein YOPM; leu 100.0 3.3E-34 1.1E-38 277.9 23.4 370 12-437 10-410 (454)
28 1o6v_A Internalin A; bacterial 100.0 1.4E-32 4.6E-37 268.8 31.0 326 8-390 63-389 (466)
29 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-32 3.7E-37 267.5 27.1 229 7-264 36-264 (457)
30 4g8a_A TOLL-like receptor 4; l 100.0 8.2E-33 2.8E-37 281.4 25.2 429 4-442 19-561 (635)
31 2id5_A Lingo-1, leucine rich r 100.0 5.8E-33 2E-37 272.6 23.1 316 16-415 14-335 (477)
32 1jl5_A Outer protein YOPM; leu 100.0 3.1E-33 1.1E-37 271.0 19.6 376 3-435 24-428 (454)
33 2id5_A Lingo-1, leucine rich r 100.0 2.2E-32 7.6E-37 268.4 22.5 314 65-435 14-332 (477)
34 4fmz_A Internalin; leucine ric 100.0 2E-31 6.7E-36 250.7 27.7 307 33-436 40-346 (347)
35 3o6n_A APL1; leucine-rich repe 100.0 9.9E-32 3.4E-36 256.8 23.9 326 35-434 43-372 (390)
36 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-31 7.4E-36 258.3 26.2 357 20-438 25-389 (457)
37 4fmz_A Internalin; leucine ric 100.0 5.5E-31 1.9E-35 247.6 28.3 297 59-450 41-338 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 1.3E-31 4.6E-36 255.8 23.8 308 10-390 42-353 (390)
39 1ogq_A PGIP-2, polygalacturona 100.0 6.6E-32 2.3E-36 249.5 19.8 258 134-445 50-313 (313)
40 3oja_B Anopheles plasmodium-re 100.0 5.3E-31 1.8E-35 265.1 23.7 330 35-438 49-383 (597)
41 3oja_B Anopheles plasmodium-re 100.0 1.3E-30 4.4E-35 262.4 24.7 307 11-390 49-359 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-32 3.8E-37 269.5 4.0 381 12-434 2-441 (461)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-32 4E-37 269.4 1.0 360 9-414 24-441 (461)
44 1xku_A Decorin; proteoglycan, 100.0 1.7E-27 6E-32 222.0 28.1 288 14-411 32-330 (330)
45 1xku_A Decorin; proteoglycan, 100.0 1.3E-27 4.4E-32 222.9 26.3 287 86-433 32-329 (330)
46 3ogk_B Coronatine-insensitive 100.0 1.2E-30 4.1E-35 263.2 2.8 404 9-438 69-528 (592)
47 2ft3_A Biglycan; proteoglycan, 100.0 7.7E-28 2.6E-32 224.5 21.5 243 132-433 76-330 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-27 5E-32 222.7 22.6 286 38-411 34-331 (332)
49 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-28 7.4E-33 225.9 15.0 251 106-414 50-306 (313)
50 2z80_A TOLL-like receptor 2, v 99.9 1.5E-26 5E-31 217.8 16.2 238 132-419 74-320 (353)
51 2z66_A Variable lymphocyte rec 99.9 2.1E-26 7.1E-31 212.4 16.8 250 134-433 28-284 (306)
52 3ogk_B Coronatine-insensitive 99.9 3.9E-28 1.3E-32 244.8 5.4 394 11-432 110-547 (592)
53 4fcg_A Uncharacterized protein 99.9 7.1E-26 2.4E-30 210.3 19.2 227 133-413 80-314 (328)
54 3zyj_A Leucine-rich repeat-con 99.9 2.2E-25 7.6E-30 216.0 21.0 228 134-414 64-293 (440)
55 2z66_A Variable lymphocyte rec 99.9 1.1E-25 3.9E-30 207.4 17.9 244 137-435 10-260 (306)
56 2p1m_B Transport inhibitor res 99.9 8E-29 2.7E-33 250.0 -3.6 401 10-433 63-541 (594)
57 2z80_A TOLL-like receptor 2, v 99.9 1.3E-26 4.6E-31 218.0 9.8 251 134-435 52-313 (353)
58 3zyi_A Leucine-rich repeat-con 99.9 4.2E-25 1.4E-29 214.8 20.3 229 134-415 75-305 (452)
59 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-26 9.1E-31 212.5 10.9 248 129-439 29-279 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 3E-25 1E-29 202.4 16.8 244 137-434 14-259 (285)
61 4fcg_A Uncharacterized protein 99.9 4.8E-25 1.7E-29 204.7 18.0 227 157-438 80-316 (328)
62 3zyj_A Leucine-rich repeat-con 99.9 5.1E-24 1.7E-28 206.5 24.3 247 87-389 45-292 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 3.8E-24 1.3E-28 208.1 22.8 247 87-389 56-303 (452)
64 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-23 8.5E-28 207.7 27.3 262 63-418 41-302 (622)
65 2p1m_B Transport inhibitor res 99.9 5E-27 1.7E-31 236.9 -0.2 385 10-425 102-556 (594)
66 3o53_A Protein LRIM1, AGAP0063 99.9 9.4E-26 3.2E-30 208.8 7.8 259 14-287 11-271 (317)
67 3oja_A Leucine-rich immune mol 99.9 1.1E-24 3.9E-29 213.0 13.6 259 125-446 25-287 (487)
68 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-24 7.1E-29 196.8 14.4 248 134-433 32-284 (285)
69 1wwl_A Monocyte differentiatio 99.9 3.4E-25 1.2E-29 204.5 9.0 248 133-438 42-311 (312)
70 3g06_A SSPH2 (leucine-rich rep 99.9 7.6E-23 2.6E-27 204.2 26.4 259 86-438 41-299 (622)
71 3oja_A Leucine-rich immune mol 99.9 4.6E-24 1.6E-28 208.7 13.9 236 11-261 32-269 (487)
72 1wwl_A Monocyte differentiatio 99.9 2.3E-24 7.8E-29 199.0 8.2 255 83-414 41-310 (312)
73 2z62_A TOLL-like receptor 4, v 99.9 4.3E-22 1.5E-26 180.6 17.6 213 158-422 28-246 (276)
74 2o6q_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 177.3 19.8 207 159-419 17-224 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 3.4E-22 1.2E-26 181.3 16.3 227 163-449 12-245 (276)
76 1p9a_G Platelet glycoprotein I 99.9 1.7E-21 5.8E-26 177.4 19.2 203 154-414 6-209 (290)
77 2o6q_A Variable lymphocyte rec 99.9 6.5E-21 2.2E-25 172.1 22.1 203 134-390 16-219 (270)
78 3goz_A Leucine-rich repeat-con 99.9 1.6E-22 5.4E-27 190.7 9.1 256 110-415 2-299 (362)
79 3goz_A Leucine-rich repeat-con 99.9 1.7E-22 5.8E-27 190.5 8.8 254 18-271 3-301 (362)
80 1p9a_G Platelet glycoprotein I 99.9 1.5E-20 5.2E-25 171.1 20.3 204 130-390 6-209 (290)
81 3rfs_A Internalin B, repeat mo 99.9 1.7E-21 5.8E-26 176.1 13.8 223 134-419 19-241 (272)
82 2ca6_A RAN GTPase-activating p 99.9 1.1E-22 3.8E-27 193.7 4.5 242 29-270 24-319 (386)
83 2ca6_A RAN GTPase-activating p 99.9 5.9E-23 2E-27 195.6 2.4 92 325-416 213-319 (386)
84 4glp_A Monocyte differentiatio 99.8 4.7E-21 1.6E-25 176.7 13.3 233 108-414 66-308 (310)
85 3rfs_A Internalin B, repeat mo 99.8 1.9E-20 6.5E-25 169.2 16.2 217 159-437 20-236 (272)
86 3m19_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 165.6 17.2 170 228-447 57-232 (251)
87 2ast_B S-phase kinase-associat 99.8 3.7E-21 1.3E-25 179.7 10.5 150 134-288 47-205 (336)
88 4glp_A Monocyte differentiatio 99.8 4.7E-21 1.6E-25 176.7 10.9 229 158-437 64-308 (310)
89 2ast_B S-phase kinase-associat 99.8 2.2E-21 7.5E-26 181.2 7.5 231 134-419 70-312 (336)
90 2xwt_C Thyrotropin receptor; s 99.8 2.5E-20 8.4E-25 165.1 12.6 198 183-434 32-237 (239)
91 1h6u_A Internalin H; cell adhe 99.8 7.4E-20 2.5E-24 168.2 14.5 210 138-415 23-232 (308)
92 3m19_A Variable lymphocyte rec 99.8 2.3E-19 7.9E-24 160.0 15.3 176 206-435 15-191 (251)
93 1h6u_A Internalin H; cell adhe 99.8 5.7E-19 2E-23 162.3 17.5 192 12-244 40-231 (308)
94 2xwt_C Thyrotropin receptor; s 99.8 9.4E-19 3.2E-23 154.9 14.4 79 328-410 155-236 (239)
95 4ay9_X Follicle-stimulating ho 99.8 1.9E-18 6.3E-23 162.0 14.2 85 134-218 30-117 (350)
96 4ay9_X Follicle-stimulating ho 99.7 2.1E-17 7.1E-22 154.8 14.6 241 137-434 12-257 (350)
97 3cvr_A Invasion plasmid antige 99.7 5.8E-17 2E-21 159.8 17.7 184 14-225 60-250 (571)
98 1h6t_A Internalin B; cell adhe 99.7 2E-17 6.9E-22 150.6 12.8 189 184-414 26-214 (291)
99 2o6s_A Variable lymphocyte rec 99.7 8.1E-17 2.8E-21 139.2 13.6 86 327-419 99-184 (208)
100 1h6t_A Internalin B; cell adhe 99.7 1.6E-16 5.4E-21 144.7 16.1 170 12-219 45-214 (291)
101 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.4E-22 141.8 8.5 153 228-437 42-195 (197)
102 2v70_A SLIT-2, SLIT homolog 2 99.7 7.4E-17 2.5E-21 140.5 12.3 137 231-417 33-170 (220)
103 3cvr_A Invasion plasmid antige 99.7 2.1E-16 7E-21 155.9 16.6 81 328-417 160-247 (571)
104 2v9t_B SLIT homolog 2 protein 99.7 1.4E-16 4.8E-21 138.7 13.4 153 208-414 14-166 (220)
105 2o6s_A Variable lymphocyte rec 99.7 1.4E-16 4.8E-21 137.7 13.2 163 105-279 27-190 (208)
106 3e6j_A Variable lymphocyte rec 99.7 1.8E-16 6E-21 139.0 13.6 159 206-419 20-178 (229)
107 1m9s_A Internalin B; cell inva 99.7 1.6E-16 5.6E-21 158.4 14.5 191 134-414 21-211 (605)
108 2v9t_B SLIT homolog 2 protein 99.7 3.3E-16 1.1E-20 136.3 14.5 151 186-389 15-165 (220)
109 2xot_A Amphoterin-induced prot 99.7 6.9E-17 2.4E-21 151.9 10.2 84 330-413 90-176 (361)
110 1m9s_A Internalin B; cell inva 99.7 1.8E-16 6.1E-21 158.1 13.3 195 183-442 22-216 (605)
111 3e6j_A Variable lymphocyte rec 99.7 5.3E-16 1.8E-20 136.0 14.1 103 330-433 66-169 (229)
112 1xeu_A Internalin C; cellular 99.7 1.8E-16 6.3E-21 141.9 10.2 171 11-197 17-187 (263)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.6E-15 5.5E-20 132.0 14.8 155 161-391 14-168 (220)
114 3sb4_A Hypothetical leucine ri 99.6 2E-16 6.7E-21 146.9 8.2 219 133-407 100-328 (329)
115 2xot_A Amphoterin-induced prot 99.6 5.4E-16 1.9E-20 145.8 11.1 176 160-413 20-202 (361)
116 1xeu_A Internalin C; cellular 99.6 1.4E-15 4.9E-20 136.1 11.7 169 182-415 19-187 (263)
117 4ezg_A Putative uncharacterize 99.6 1.4E-15 4.7E-20 130.1 10.7 81 133-216 111-192 (197)
118 1dce_A Protein (RAB geranylger 99.6 5.9E-17 2E-21 160.6 -0.3 86 329-417 464-550 (567)
119 2wfh_A SLIT homolog 2 protein 99.6 7E-15 2.4E-19 125.0 12.5 105 329-434 32-137 (193)
120 1w8a_A SLIT protein; signaling 99.6 4.2E-15 1.4E-19 126.4 10.9 116 326-441 52-168 (192)
121 2ell_A Acidic leucine-rich nuc 99.6 6.2E-15 2.1E-19 122.6 10.2 109 329-439 50-163 (168)
122 1dce_A Protein (RAB geranylger 99.6 1.5E-16 5.2E-21 157.6 -0.3 109 328-441 441-551 (567)
123 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 120.8 11.0 106 329-434 29-135 (177)
124 3sb4_A Hypothetical leucine ri 99.5 2.8E-14 9.6E-19 132.3 12.5 100 181-283 225-326 (329)
125 2ell_A Acidic leucine-rich nuc 99.5 2.2E-14 7.6E-19 119.2 9.3 89 327-415 70-162 (168)
126 1w8a_A SLIT protein; signaling 99.5 3.9E-14 1.3E-18 120.4 10.6 109 327-435 28-138 (192)
127 4fs7_A Uncharacterized protein 99.5 4.1E-13 1.4E-17 127.8 18.5 317 25-410 59-376 (394)
128 2je0_A Acidic leucine-rich nuc 99.5 2.1E-14 7E-19 116.9 7.4 101 329-431 43-148 (149)
129 3g39_A Variable lymphocyte rec 99.5 1E-13 3.4E-18 115.3 10.2 112 330-449 11-123 (170)
130 4b8c_D Glucose-repressible alc 99.5 2.4E-14 8.4E-19 146.3 6.5 114 132-247 245-358 (727)
131 2wfh_A SLIT homolog 2 protein 99.5 6.4E-13 2.2E-17 112.8 14.1 89 327-415 53-141 (193)
132 4b8c_D Glucose-repressible alc 99.5 2.4E-14 8.3E-19 146.3 6.2 115 132-274 222-336 (727)
133 2o6r_A Variable lymphocyte rec 99.5 7.5E-13 2.6E-17 110.9 13.4 93 327-419 51-143 (177)
134 2r9u_A Variable lymphocyte rec 99.5 2.5E-13 8.6E-18 113.2 10.2 109 331-447 15-124 (174)
135 2je0_A Acidic leucine-rich nuc 99.5 1.9E-13 6.4E-18 111.1 8.9 127 133-261 16-147 (149)
136 4fdw_A Leucine rich hypothetic 99.4 3.1E-12 1E-16 121.3 17.1 263 12-292 112-384 (401)
137 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 6.9E-18 114.3 8.0 103 329-434 43-151 (176)
138 4fdw_A Leucine rich hypothetic 99.4 5.8E-12 2E-16 119.4 17.2 87 324-413 296-383 (401)
139 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4.1E-17 108.7 10.8 92 328-419 30-121 (170)
140 2r9u_A Variable lymphocyte rec 99.4 3.1E-12 1.1E-16 106.6 11.0 95 328-422 33-127 (174)
141 1ds9_A Outer arm dynein; leuci 99.4 4.3E-15 1.5E-19 127.2 -6.9 107 327-438 69-187 (198)
142 3un9_A NLR family member X1; l 99.3 9.5E-14 3.3E-18 130.3 -0.8 160 37-196 72-253 (372)
143 1a9n_A U2A', U2A'; complex (nu 99.3 5.3E-12 1.8E-16 105.6 10.0 82 132-217 17-100 (176)
144 4fs7_A Uncharacterized protein 99.3 1.9E-11 6.4E-16 116.2 15.0 331 51-451 60-394 (394)
145 4gt6_A Cell surface protein; l 99.3 3.2E-10 1.1E-14 107.7 19.3 81 328-411 288-368 (394)
146 1ds9_A Outer arm dynein; leuci 99.2 3.1E-13 1.1E-17 115.5 -2.0 147 133-284 17-180 (198)
147 3un9_A NLR family member X1; l 99.2 1.5E-12 5.2E-17 122.1 1.2 165 60-224 70-258 (372)
148 2ifg_A High affinity nerve gro 99.2 4.4E-11 1.5E-15 111.7 9.3 101 332-434 12-114 (347)
149 4gt6_A Cell surface protein; l 99.0 6.1E-09 2.1E-13 98.8 16.1 268 7-288 57-367 (394)
150 2ifg_A High affinity nerve gro 99.0 1.9E-09 6.3E-14 100.6 10.9 88 327-415 30-118 (347)
151 4h09_A Hypothetical leucine ri 99.0 6.6E-08 2.2E-12 91.2 20.5 35 228-263 215-249 (379)
152 4h09_A Hypothetical leucine ri 98.7 5.4E-07 1.8E-11 84.9 18.9 312 10-401 43-357 (379)
153 2ra8_A Uncharacterized protein 98.7 1.5E-08 5E-13 94.3 6.6 14 204-217 192-205 (362)
154 2ra8_A Uncharacterized protein 98.7 1.8E-08 6.1E-13 93.7 5.9 182 6-193 132-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 4.4E-08 1.5E-12 82.1 3.7 65 107-171 94-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 7E-08 2.4E-12 80.9 4.4 115 32-146 31-163 (185)
157 3e4g_A ATP synthase subunit S, 98.4 8.2E-08 2.8E-12 78.4 3.0 92 4-96 52-150 (176)
158 3e4g_A ATP synthase subunit S, 98.3 1E-07 3.5E-12 77.9 -0.5 86 328-413 61-153 (176)
159 3rw6_A Nuclear RNA export fact 98.1 1.3E-06 4.5E-11 76.9 4.3 65 326-392 168-236 (267)
160 3rw6_A Nuclear RNA export fact 98.1 1.5E-06 5.1E-11 76.6 4.6 80 349-430 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 7.4E-05 2.5E-09 62.1 4.2 85 60-144 39-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00013 4.4E-09 60.7 4.5 65 107-171 42-111 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.001 3.4E-08 51.6 5.6 58 355-414 11-69 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0039 1.3E-07 48.2 6.9 57 331-389 11-68 (130)
165 2lz0_A Uncharacterized protein 74.3 3 0.0001 30.0 3.6 47 24-72 7-53 (100)
166 2lz0_A Uncharacterized protein 68.6 14 0.00049 26.3 6.2 46 340-386 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.2e-48 Score=398.86 Aligned_cols=431 Identities=33% Similarity=0.486 Sum_probs=266.0
Q ss_pred CCCcccEEEccCCcCCCCCCccccCC-CcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcC-ccCCCCC
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQ-KHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPN-LTNAAQL 87 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~-l~~~~~L 87 (453)
.+++|++|++++|.+++..|..+.+. ++|++|++++|.+.+.+|..+ +.+++|++|++++|.+.+ .+.. +..+++|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 45556666666665554555554443 556666666665555555554 555556666666655542 3322 4555556
Q ss_pred cEEEccCCccccccccc---cc-cCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEE
Q 048417 88 EVLSLGSNSFSIALPLI---SS-YLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMIL 163 (453)
Q Consensus 88 ~~L~l~~~~~~~~~~~~---~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 163 (453)
++|++++|.+.+..+.. ++ +|++|++++|.+.+..+..+.. ..+++|++|++++|.+++..|..+..+++|++|
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh--cccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 66666555555433332 22 5555555555554332222211 014455555555555554555555555555555
Q ss_pred EcccCccCCCCCccccccccccEEEccCCccccc-cccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcc
Q 048417 164 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT-IHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242 (453)
Q Consensus 164 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 242 (453)
++++|.+.+..|..+..+++|+.|++++|.+.+. +..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRL 502 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH-hcCCCCCEEEccCCcc
Confidence 5555555555555555555555555555555432 2444555555555555555554444433 2455555555555555
Q ss_pred cccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch-hhhhhhhhc---------------------
Q 048417 243 YNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI-QYQFLLYAS--------------------- 300 (453)
Q Consensus 243 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~-~~~~~~~~~--------------------- 300 (453)
.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|+.. .++......
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 5555555555555555555555555555555555555555555555432 111110000
Q ss_pred -----------------cchhhhhhhhh-----HHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEE
Q 048417 301 -----------------RAPLIATLLED-----AFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVN 358 (453)
Q Consensus 301 -----------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 358 (453)
.+......... ....+.+.....+..+++|++|++++|++++.+|..++.++.|+.|+
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 00000000000 00111222334456678999999999999999999999999999999
Q ss_pred cCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC-ccC
Q 048417 359 LSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCR 437 (453)
Q Consensus 359 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~ 437 (453)
+++|.+++.+|..++.+++|+.||+++|++++.+|+.+..++.|++|++++|+++|.+|...++.++....+.||+ +||
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCCCCC
Q 048417 438 APLSGNCSE 446 (453)
Q Consensus 438 ~~~~~~c~~ 446 (453)
.|+. .|+.
T Consensus 743 ~~l~-~C~~ 750 (768)
T 3rgz_A 743 YPLP-RCDP 750 (768)
T ss_dssp TTSC-CCCS
T ss_pred CCCc-CCCC
Confidence 9987 8864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-45 Score=381.23 Aligned_cols=429 Identities=27% Similarity=0.366 Sum_probs=306.4
Q ss_pred CcccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcC
Q 048417 2 TLKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPN 80 (453)
Q Consensus 2 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~ 80 (453)
++.+|. +.++++|++|++++|.+++..+.++.++++|++|++++|.+.+.+|.. .+++|++|++++|.+++ .+..
T Consensus 213 ~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~ 288 (768)
T 3rgz_A 213 STGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDF 288 (768)
T ss_dssp CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCC
T ss_pred CCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHH
Confidence 445555 889999999999999998888888999999999999999987766654 67888888888888874 5555
Q ss_pred ccCC-CCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhc
Q 048417 81 LTNA-AQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMN 156 (453)
Q Consensus 81 l~~~-~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 156 (453)
+... ++|++|++++|.+.+..+.. +++|++|++++|.+.+..+.. .+..+++|++|++++|.+++..|..+..
T Consensus 289 ~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~---~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 365 (768)
T 3rgz_A 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD---TLLKMRGLKVLDLSFNEFSGELPESLTN 365 (768)
T ss_dssp SCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH---HHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred HHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH---HHhcCCCCCEEeCcCCccCccccHHHHh
Confidence 5554 78888888888887655543 567888888888776433322 1335778888888888777667777776
Q ss_pred CC-cccEEEcccCccCCCCCccccc--cccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcc
Q 048417 157 YQ-NLMILDLSNNKFTGNLPISLGS--LISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRI 232 (453)
Q Consensus 157 l~-~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 232 (453)
+. +|++|++++|.+.+..|..+.. +++|+.|++++|.+++.. ..+..+++|+.|++++|.+.+..+..+ ..+++|
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L 444 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKL 444 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTC
T ss_pred hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCC
Confidence 65 7777777777776555555544 566777777777666433 556666667777777766655555443 356666
Q ss_pred eEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhH
Q 048417 233 VVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDA 312 (453)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (453)
+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|..........+..+... .+ ...
T Consensus 445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L-~L~ 522 (768)
T 3rgz_A 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA-IL-KLS 522 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EE-ECC
T ss_pred CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC-EE-ECC
Confidence 6666666666666666666666666666666666666666666666666666666654422111111100000 00 000
Q ss_pred HHHhcCCcchhhhhcCcccEEecCCCcCCCcCCcc---------------------------------------------
Q 048417 313 FVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLE--------------------------------------------- 347 (453)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--------------------------------------------- 347 (453)
...+.+.....+..+++|++|++++|.+.+.+|..
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 00112233445667888889999888876555543
Q ss_pred -------------------------ccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCC
Q 048417 348 -------------------------VTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFL 402 (453)
Q Consensus 348 -------------------------~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 402 (453)
+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|+.+..+++|
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 682 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence 3345789999999999999999999999999999999999999999999999999
Q ss_pred CEEEccCCcccccCCCC-cccceeecccCCCCCccCCCC
Q 048417 403 NHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPL 440 (453)
Q Consensus 403 ~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~ 440 (453)
++|++++|++++.+|.. ..+++|+.+++++|+++|...
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 99999999999988866 889999999999999876533
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-43 Score=357.51 Aligned_cols=427 Identities=21% Similarity=0.209 Sum_probs=259.6
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~ 83 (453)
.|..|.++++|++|+|++|.+++..+.+|.++++|++|++++|++.+..|..+ +.+++|++|++++|.++.. +..+.+
T Consensus 49 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~l~~~~~~~ 127 (606)
T 3t6q_A 49 QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPKALKHLFFIQTGISSIDFIPLHN 127 (606)
T ss_dssp CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT-SSCTTCCEEECTTSCCSCGGGSCCTT
T ss_pred ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh-cccccccEeeccccCcccCCcchhcc
Confidence 46678888899999999988887778888889999999999988866666665 7888888888888888874 456778
Q ss_pred CCCCcEEEccCCcccccc-cc--ccccCcEEECcCCCCCCchhhhhhhhhcccCccc--EEeccCCCCC-----------
Q 048417 84 AAQLEVLSLGSNSFSIAL-PL--ISSYLIELDFSNNSISGSIFHFICYRANELNKWQ--ILYLSGNFLQ----------- 147 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~-~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~----------- 147 (453)
+++|++|++++|.+.... +. .+++|++|++++|.+....+..+. .+++|+ +|++++|.++
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~l~L~l~~n~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS----SLQQATNLSLNLNGNDIAGIEPGAFDSAV 203 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH----TTTTCCSEEEECTTCCCCEECTTTTTTCE
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh----hhcccceeEEecCCCccCccChhHhhhcc
Confidence 888888888888877632 21 256788888888877654333322 344444 4555555444
Q ss_pred ----------------------------------------------------------------CCCchhhhcCCcccEE
Q 048417 148 ----------------------------------------------------------------GELPDCWMNYQNLMIL 163 (453)
Q Consensus 148 ----------------------------------------------------------------~~~~~~l~~l~~L~~L 163 (453)
+..+..+..+++|++|
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence 3333334445555555
Q ss_pred EcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcc
Q 048417 164 DLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242 (453)
Q Consensus 164 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 242 (453)
++++|.+. .+|..+..+++|++|++++|.+.+.. ..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+
T Consensus 284 ~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp ECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred eccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 55555555 44444555555555555555555443 34455555555555555554444443334555566666665555
Q ss_pred cccC--chhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhh-hhccchhhhhhhhhHHHHhcCC
Q 048417 243 YNLL--PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLL-YASRAPLIATLLEDAFVVMKGR 319 (453)
Q Consensus 243 ~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 319 (453)
.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++.++......... ..... .+.... .....+...
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~-l~~n~l~~~ 440 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-LLKVLN-LSHSLLDIS 440 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT-TCCEEE-CTTCCCBTT
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc-cCCEEE-CCCCccCCc
Confidence 4433 444555666666666666655555555666666666666655543221110 00000 000000 000011222
Q ss_pred cchhhhhcCcccEEecCCCcCCCc---CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccc
Q 048417 320 EAKYERTLNLVRIIDFSKNNFSGK---IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396 (453)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 396 (453)
....+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+..|+.+
T Consensus 441 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence 233445566777777777766541 22446666777777777777776666667777777777777777776667777
Q ss_pred cCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCCCCCC
Q 048417 397 SSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCS 445 (453)
Q Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~ 445 (453)
..++.| +|++++|++++.+|.. ..+++|+.+++++|| +.|.|+
T Consensus 521 ~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-----~~c~c~ 564 (606)
T 3t6q_A 521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP-----LDCTCS 564 (606)
T ss_dssp TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC-----EECSGG
T ss_pred Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC-----ccccCC
Confidence 777777 7777777777655553 667777777777774 445554
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.9e-41 Score=341.69 Aligned_cols=426 Identities=20% Similarity=0.185 Sum_probs=283.8
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~ 83 (453)
+|..+. +.+++|++++|.+++..+.+|+++++|++|++++|++.+..|..+ ..+++|++|++++|.++.. +..+.+
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF-QSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhc-cCccccCeeeCCCCcccccChhhhcc
Confidence 454443 379999999999988888899999999999999999977667776 8999999999999999874 567889
Q ss_pred CCCCcEEEccCCccccccc---cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 84 AAQLEVLSLGSNSFSIALP---LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
+++|++|++++|.+....+ ..+++|++|++++|.+.......+ ..+++|++|++++|.+++..+..+..+.+|
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG----FPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT----CCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccc----cCCcccCEEEcccCcccccChhhhhhhccc
Confidence 9999999999999987533 336799999999999886332222 248999999999999997667778888877
Q ss_pred c--EEEcccCccCCCCCc--------------------------------------------------------------
Q 048417 161 M--ILDLSNNKFTGNLPI-------------------------------------------------------------- 176 (453)
Q Consensus 161 ~--~L~l~~~~~~~~~~~-------------------------------------------------------------- 176 (453)
+ +|++++|.+.+..|.
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 7 777777766543332
Q ss_pred -------------cccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccc
Q 048417 177 -------------SLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY 243 (453)
Q Consensus 177 -------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 243 (453)
.|..+++|++|++++|.++.++..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcc
Confidence 234445555555555555555455555555555665555554432322 234555666666665554
Q ss_pred ccCc-hhhcCCCCccEEEccCCcCCCCc--ccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCC-
Q 048417 244 NLLP-KELCDLAFLQIVDLADNNLSGEV--PRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGR- 319 (453)
Q Consensus 244 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (453)
...+ ..+..+++|++|++++|.+.+.. +..+..+++|+.|+++++.............+. +..+... ...+...
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~-~n~l~~~~ 416 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLA-FTRLKVKD 416 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT-CSEEECT-TCCEECCT
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc-CCeEECC-CCcCCCcc
Confidence 3332 23555666666666666665333 445666666666666665543322211111110 0000000 0001111
Q ss_pred cchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCC---CCccccCCCCCCEEEcCCCcCCCCCCccc
Q 048417 320 EAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGR---IPESVGTMRSLESIDFSLNQLSGEIPQSM 396 (453)
Q Consensus 320 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 396 (453)
....+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|++.+..|..+
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 122355667777788777777766677777777888888888777642 22456777788888888888777777777
Q ss_pred cCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCC
Q 048417 397 SSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLS 441 (453)
Q Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~ 441 (453)
..+++|++|++++|++++.+|.. ..++.| .+++++|.+++.+..
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 78888888888888877665543 667777 788888877766543
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-41 Score=344.86 Aligned_cols=404 Identities=19% Similarity=0.222 Sum_probs=332.5
Q ss_pred CcccEEEccCCcCCCCCCccccCCCcccEEEcCCC---------------------------------------------
Q 048417 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYS--------------------------------------------- 47 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~--------------------------------------------- 47 (453)
.+++.|+|+++.+.+..|.+++++++|++|++++|
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46888888888887778888888888888888777
Q ss_pred ---------------------------------cccccchhhHhhcCCCeEEEEccCCcccC------------------
Q 048417 48 ---------------------------------GIIGTIPNIFWSSASQIYVLDLSFNQIHG------------------ 76 (453)
Q Consensus 48 ---------------------------------~~~~~~~~~~~~~l~~L~~L~ls~~~~~~------------------ 76 (453)
++++ +|..+ +.+++|++|++++|.+++
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhccc
Confidence 3334 67765 889999999999999998
Q ss_pred CCcCcc--CCCCCcEEEccCCccccccccc---cccCcEEECcCCC-CCC-chhhhhhh--hhcccCcccEEeccCCCCC
Q 048417 77 QIPNLT--NAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNS-ISG-SIFHFICY--RANELNKWQILYLSGNFLQ 147 (453)
Q Consensus 77 ~~~~l~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~-l~~-~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 147 (453)
.+..+. ++++|++|++++|.+.+..+.. +++|++|++++|. +++ ..+..+.. .+..+++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 888888 9999999999999988876654 5799999999998 875 44444432 1233499999999999999
Q ss_pred CCCch--hhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCC-CCEEeCCCCcccccCchH
Q 048417 148 GELPD--CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTA-LMTLDVGENELVENIPTW 224 (453)
Q Consensus 148 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~ 224 (453)
.+|. .+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.++.++..+..+++ |+.|++++|.+. .+|..
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 8888 89999999999999999997788 889999999999999999988788999999 999999999987 56654
Q ss_pred HHh-ccCcceEEEecCCcccccCchhhc-------CCCCccEEEccCCcCCCCcccc-cccccccceeccccCcchhhhh
Q 048417 225 IRE-RFSRIVVLILRSNKFYNLLPKELC-------DLAFLQIVDLADNNLSGEVPRC-IHNLRAMVTMNSHAGKAIQYQF 295 (453)
Q Consensus 225 ~~~-~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~l~i~~~~~~~~~~ 295 (453)
+.. .+++|+.|++++|.+.+..|..+. .+++|++|++++|.+. .+|.. +..+++|+.|+++++.+..++.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 321 234899999999999988888787 7789999999999999 56654 5568999999999988664433
Q ss_pred hhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCcccc--CCCCCcEEEcCCccCCCCCCcccc
Q 048417 296 LLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVT--NLKVLQSVNLSNNFFTGRIPESVG 373 (453)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~ 373 (453)
....... .....+++|++|++++|.++ .+|..+. .+++|+.|++++|++.+ +|..+.
T Consensus 475 ~~~~~~~-------------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 533 (636)
T 4eco_A 475 NSLKDEN-------------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533 (636)
T ss_dssp SSSEETT-------------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred HHhcccc-------------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence 2111000 00123458999999999998 7777776 89999999999999995 899999
Q ss_pred CCCCCCEEEc------CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCCccCCCCCCCCC
Q 048417 374 TMRSLESIDF------SLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGNCS 445 (453)
Q Consensus 374 ~l~~L~~L~l------~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~c~ 445 (453)
.+++|+.|++ ++|++.+.+|..+..+++|++|++++|++. .+|.. ..++|+.+++++|++...+....|+
T Consensus 534 ~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~-~~~~L~~L~Ls~N~l~~~~~~~~~~ 609 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEK-ITPNISVLDIKDNPNISIDLSYVCP 609 (636)
T ss_dssp GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSC-CCTTCCEEECCSCTTCEEECTTTHH
T ss_pred cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHh-HhCcCCEEECcCCCCccccHHhcch
Confidence 9999999999 567788899999999999999999999995 66664 3389999999999977666555554
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-40 Score=337.14 Aligned_cols=417 Identities=17% Similarity=0.117 Sum_probs=253.4
Q ss_pred CCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCC-cCccCC
Q 048417 6 NDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQI-PNLTNA 84 (453)
Q Consensus 6 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-~~l~~~ 84 (453)
+..|.++++|++|++++|.+++..+.+|.++++|++|++++|++++..|..+ +.+++|++|++++|.++..+ ..+.++
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l 127 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSLENLVAVETKLASLESFPIGQL 127 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS-TTCTTCCEEECTTSCCCCSSSSCCTTC
T ss_pred hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc-CCcccCCEEEccCCccccccccccCCC
Confidence 3467777777777777777766666777777777777777777755556555 67777777777777776544 456677
Q ss_pred CCCcEEEccCCcccc-cccc---ccccCcEEECcCCCCCCchhhhhhh-----------------------hhcccCccc
Q 048417 85 AQLEVLSLGSNSFSI-ALPL---ISSYLIELDFSNNSISGSIFHFICY-----------------------RANELNKWQ 137 (453)
Q Consensus 85 ~~L~~L~l~~~~~~~-~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~-----------------------~~~~~~~L~ 137 (453)
.+|++|++++|.+.. ..+. .+++|++|++++|.+....+..+.. ......+|+
T Consensus 128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence 777777777777664 2222 2456777777776665432221110 000111445
Q ss_pred EEeccCCCCC----------------------------------------------------------CCCchhhhcCCc
Q 048417 138 ILYLSGNFLQ----------------------------------------------------------GELPDCWMNYQN 159 (453)
Q Consensus 138 ~L~l~~~~~~----------------------------------------------------------~~~~~~l~~l~~ 159 (453)
+|++++|.+. +..|. +..+++
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~ 286 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLAN 286 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTT
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCC
Confidence 5555444331 01111 334455
Q ss_pred ccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecC
Q 048417 160 LMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRS 239 (453)
Q Consensus 160 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 239 (453)
|++++++++.+. ..| .+..+++|+.|++++|.+..++ .+ .+++|+.|++++|......+ +..+++|++|++++
T Consensus 287 L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 287 VSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSR 359 (606)
T ss_dssp CSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECC---CCCCTTCCEEECCS
T ss_pred CCEEEecCccch-hhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchh---hccCCCCCEEECcC
Confidence 666666666665 333 4555666666666666654333 33 45555555555553222121 12344555555555
Q ss_pred Cccccc--CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhh-hhhccchhhhhhhhhHHHHh
Q 048417 240 NKFYNL--LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFL-LYASRAPLIATLLEDAFVVM 316 (453)
Q Consensus 240 ~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 316 (453)
|.+.+. .+..+..+++|++|++++|.+. .+|..+..+++|+.|++.++........ ....... +.... ......
T Consensus 360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~-l~~n~l 436 (606)
T 3vq2_A 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK-LLYLD-ISYTNT 436 (606)
T ss_dssp SCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT-CCEEE-CTTSCC
T ss_pred CccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhcccc-CCEEE-CcCCCC
Confidence 544433 1344444455555555555444 3334444445555555444443322210 0000000 00000 000001
Q ss_pred cCCcchhhhhcCcccEEecCCCcCCC-cCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCcc
Q 048417 317 KGREAKYERTLNLVRIIDFSKNNFSG-KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQS 395 (453)
Q Consensus 317 ~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 395 (453)
.......+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+..|..
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 11223345678899999999999986 47888999999999999999999888888999999999999999999888999
Q ss_pred ccCCCCCCEEEccCCcccccCCCCcccc-eeecccCCCCC
Q 048417 396 MSSLKFLNHLNLSNNNLTGKIPSSTQLQ-SFDASSFSGND 434 (453)
Q Consensus 396 l~~l~~L~~L~l~~n~l~~~~~~~~~l~-~L~~l~l~~n~ 434 (453)
+..+++|++|++++|+++..++.+..++ +|+.+++++||
T Consensus 517 ~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred ccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence 9999999999999999996666667776 59999999996
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.5e-40 Score=339.22 Aligned_cols=423 Identities=20% Similarity=0.163 Sum_probs=209.8
Q ss_pred CCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCC-cCccCCCC
Q 048417 8 NWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQI-PNLTNAAQ 86 (453)
Q Consensus 8 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-~~l~~~~~ 86 (453)
.+.++++|++|++++|.+++..+.+|+++++|++|++++|.+ ..+|...++.+++|++|++++|.++..+ ..+.++++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 456666666666666666655556666666666666666666 3344333355666666666666655443 33555555
Q ss_pred CcEEEccCCcccccccc---ccccCcEEECcCCCCCCchhhhhhhhhccc------------------------------
Q 048417 87 LEVLSLGSNSFSIALPL---ISSYLIELDFSNNSISGSIFHFICYRANEL------------------------------ 133 (453)
Q Consensus 87 L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~------------------------------ 133 (453)
|++|++++|.+....+. .+++|++|++++|.+.......+.. ..+
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI--FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG--GTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc--cccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 66666655555443322 1334444444444443322211110 011
Q ss_pred ---------------------CcccEEeccCCCCCCCCchhhhcCCc--ccEEEcccCccCCCCCccccccccccEEEcc
Q 048417 134 ---------------------NKWQILYLSGNFLQGELPDCWMNYQN--LMILDLSNNKFTGNLPISLGSLISLQSLHLR 190 (453)
Q Consensus 134 ---------------------~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 190 (453)
++|++|++++|.+++..+..+..+.. |++|++++|.+.+..+..|..+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 22333333333333323333333332 6666666666555555555556666666666
Q ss_pred CCcccccc-ccc---------------------------------cccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 191 KNNLCGTI-HSL---------------------------------ENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 191 ~~~~~~~~-~~~---------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
+|.+.+.. ..+ ..+++|+.|++++|.+.+..+. .+..+++|++|+
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ 359 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLS 359 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEE
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEEE
Confidence 65554332 223 3344444444444444332221 122333333333
Q ss_pred e----------------------------cCCcccccCchhhcCCCCccEEEccCCcCCCCcc-cccccccccceecccc
Q 048417 237 L----------------------------RSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVP-RCIHNLRAMVTMNSHA 287 (453)
Q Consensus 237 l----------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~i~~ 287 (453)
+ ++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|+.+++++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence 3 3333333334445555555555555555544333 4455555555555555
Q ss_pred CcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCC
Q 048417 288 GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGR 367 (453)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 367 (453)
++........+...+....-................+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 55332222111111100000000000000012233455667777777777777755566666777777777777766532
Q ss_pred C--------CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCC
Q 048417 368 I--------PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGND 434 (453)
Q Consensus 368 ~--------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~ 434 (453)
. +..+..+++|++|++++|++....+..|..+++|++|++++|++++.++.. ..+++|+.+++++|.
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 1 122556666777777777666433445666667777777766666544443 455666666666654
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=335.23 Aligned_cols=258 Identities=19% Similarity=0.187 Sum_probs=164.8
Q ss_pred ccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCC
Q 048417 176 ISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAF 255 (453)
Q Consensus 176 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 255 (453)
..+..+++|+.|++++|.+..++..+..+ +|+.|++++|.+. .++. ..+++|+.+++.+|.+....+. ..+++
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~ 348 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPS 348 (570)
T ss_dssp TTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTT
T ss_pred hhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCC
Confidence 33444556666666666665555545555 6666666666554 2332 1344555555555544333222 34555
Q ss_pred ccEEEccCCcCCCCc--ccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCC-cchhhhhcCcccE
Q 048417 256 LQIVDLADNNLSGEV--PRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGR-EAKYERTLNLVRI 332 (453)
Q Consensus 256 L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~ 332 (453)
|++|++++|.+.+.. +..+..+++|+.|+++++........ ...... +..+.... ..+... ....+..+++|++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~-L~~L~l~~-n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ-LEHLDFQH-SNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTT-CCEEECTT-SEEESCTTSCTTTTCTTCCE
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCC-CCEEEccC-CccccccchhhhhcCCCCCE
Confidence 555555555554222 34455555555555555543332211 000000 00000000 000111 1124567889999
Q ss_pred EecCCCcCCCcCCccccCCCCCcEEEcCCccCC-CCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCc
Q 048417 333 IDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFT-GRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN 411 (453)
Q Consensus 333 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 411 (453)
|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++.+..|..+..+++|++|++++|+
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 999999998888888999999999999999987 4688889999999999999999998889999999999999999999
Q ss_pred ccccCCCC-cccceeecccCCCCCccCCCCCCCCCCCc
Q 048417 412 LTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCSEHV 448 (453)
Q Consensus 412 l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~~~~ 448 (453)
+++.++.. ..+++|+.+++++|+ +.|.|+...
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~-----~~~~~~~~~ 538 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNP-----WDCSCPRID 538 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC-----BCCCTTTTH
T ss_pred CCCCCHHHhhcccCCcEEEecCCc-----ccCCCcchH
Confidence 99877654 789999999999995 456666543
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-39 Score=333.44 Aligned_cols=436 Identities=20% Similarity=0.198 Sum_probs=279.4
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-CccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-~l~~ 83 (453)
+|..+. +++++|+|++|.+++..+.+|.++++|++|++++|.+++..|..+ +.+++|++|++++|.++..+. .+.+
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC-QKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH-HHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH-hcccCcCEEECCCCccCccChhhhcc
Confidence 555443 689999999999988877889999999999999999977667665 889999999999999998776 5889
Q ss_pred CCCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhh--cCC
Q 048417 84 AAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM--NYQ 158 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~l~ 158 (453)
+++|++|++++|.+....+.. +++|++|++++|.+....+.. +..+++|++|++++|.+++..+..+. .++
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT----QVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS----SSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh----hcccccCCEEEccCCcccccCHHHhhccccc
Confidence 999999999999998766443 679999999999988654433 34699999999999999866665544 457
Q ss_pred cccEEEcccCccCCCCCcccccc---------------------------ccccEEEccCCcccccc-ccccccC--CCC
Q 048417 159 NLMILDLSNNKFTGNLPISLGSL---------------------------ISLQSLHLRKNNLCGTI-HSLENCT--ALM 208 (453)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~-~~~~~~~--~L~ 208 (453)
+|++|++++|.+.+..|..+..+ ++|+.|++++|.+.+.. ..+..++ +|+
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~ 251 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC
T ss_pred cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC
Confidence 89999999888876655544433 23444444445444332 2333332 255
Q ss_pred EEeCCCCcccccCchHHHhccCcceEEEecCCcccccCch---------------------------------hhcCCCC
Q 048417 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPK---------------------------------ELCDLAF 255 (453)
Q Consensus 209 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------------------------~~~~~~~ 255 (453)
.|++++|.+.+..+.. +..+++|++|++++|.+.+..+. .+..+++
T Consensus 252 ~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp EEECTTSCCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred EEECCCCCcCccCccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 5555555554333222 23455555555555554433332 4455666
Q ss_pred ccEEEccCCcCCCCcccccccccccceeccccCcc--hhhhhhhhhccc-hhhhhhhhhHHHHhcCCcchhhhhcCcccE
Q 048417 256 LQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA--IQYQFLLYASRA-PLIATLLEDAFVVMKGREAKYERTLNLVRI 332 (453)
Q Consensus 256 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (453)
|++|++++|.+.+..+..+..+++|+.++++++.. .......+.... ..+... ......+.......+..+++|++
T Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL-NLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEE-ECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceE-ECCCCCCCeEChhhhhCCCCCCE
Confidence 77777777777766666677777777777776542 111100000000 000000 00000011111222333444444
Q ss_pred EecCCCcC-------------------------CCcCCccccCCCCCcEEEcCCccCC--CCCCccccCCCCCCEEEcCC
Q 048417 333 IDFSKNNF-------------------------SGKIPLEVTNLKVLQSVNLSNNFFT--GRIPESVGTMRSLESIDFSL 385 (453)
Q Consensus 333 L~l~~~~l-------------------------~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~ 385 (453)
|++++|.+ .+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 55444444 4334444444555555555555543 34566677788888888888
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcccccCC---------CCcccceeecccCCCCCccCCCCC--CCCCCCcc
Q 048417 386 NQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIP---------SSTQLQSFDASSFSGNDLCRAPLS--GNCSEHVS 449 (453)
Q Consensus 386 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---------~~~~l~~L~~l~l~~n~l~~~~~~--~~c~~~~~ 449 (453)
|++.+..+..+..+++|++|++++|++++..+ ....+++|+.+++++|.+...|.. ..|+.++.
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 88886666778888888888888888875321 146678888888888888777653 34554443
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.9e-40 Score=336.87 Aligned_cols=403 Identities=17% Similarity=0.187 Sum_probs=326.8
Q ss_pred CcccEEEccCCcCCCCCCccccCCCcccEEEc-CCCccccc---------------------------------------
Q 048417 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDL-SYSGIIGT--------------------------------------- 52 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~--------------------------------------- 52 (453)
.+++.|+|+++.+.+..|..++++++|++|+| ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46888999999888888888899999999999 66643222
Q ss_pred -------------------------------------chhhHhhcCCCeEEEEccCCcccC------------------C
Q 048417 53 -------------------------------------IPNIFWSSASQIYVLDLSFNQIHG------------------Q 77 (453)
Q Consensus 53 -------------------------------------~~~~~~~~l~~L~~L~ls~~~~~~------------------~ 77 (453)
+|..+ ..+++|++|++++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 66665 889999999999999998 7
Q ss_pred CcCcc--CCCCCcEEEccCCccccccccc---cccCcEEECcCCC-CCC-chhhhhhh---hhcccCcccEEeccCCCCC
Q 048417 78 IPNLT--NAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNS-ISG-SIFHFICY---RANELNKWQILYLSGNFLQ 147 (453)
Q Consensus 78 ~~~l~--~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~-l~~-~~~~~~~~---~~~~~~~L~~L~l~~~~~~ 147 (453)
+..+. ++++|++|++++|.+.+..+.. +++|++|++++|. +++ ..+..+.. .+..+++|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 78877 9999999999999988776654 5799999999998 775 44443332 2345669999999999999
Q ss_pred CCCch--hhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCC-CCEEeCCCCcccccCchH
Q 048417 148 GELPD--CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTA-LMTLDVGENELVENIPTW 224 (453)
Q Consensus 148 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~ 224 (453)
.+|. .+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+..++..+..+++ |+.|++++|.+. .+|..
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 8888 8999999999999999999 777 889999999999999999977778889998 999999999987 56643
Q ss_pred HHhcc--CcceEEEecCCcccccCchh---hc--CCCCccEEEccCCcCCCCccccc-ccccccceeccccCcchhhhhh
Q 048417 225 IRERF--SRIVVLILRSNKFYNLLPKE---LC--DLAFLQIVDLADNNLSGEVPRCI-HNLRAMVTMNSHAGKAIQYQFL 296 (453)
Q Consensus 225 ~~~~~--~~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~i~~~~~~~~~~~ 296 (453)
+. .. ++|+.|++++|.+.+..|.. +. .+++|+.|++++|.+. .+|..+ ..+++|+.|+++++.+..++..
T Consensus 638 ~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 638 FN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp CC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 32 33 35999999999997765432 22 3458999999999999 677655 4889999999999876644433
Q ss_pred hhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCcccc--CCCCCcEEEcCCccCCCCCCccccC
Q 048417 297 LYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVT--NLKVLQSVNLSNNFFTGRIPESVGT 374 (453)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~ 374 (453)
...... .....+++|++|++++|+++ .+|..+. .+++|+.|++++|.+.+ +|..+..
T Consensus 716 ~~~~~~-------------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~ 774 (876)
T 4ecn_A 716 SLKPKD-------------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN 774 (876)
T ss_dssp SSSCTT-------------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred Hhcccc-------------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc
Confidence 221000 01224568999999999998 7787776 89999999999999995 8888999
Q ss_pred CCCCCEEEcCC------CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCCccCCCCCCCCC
Q 048417 375 MRSLESIDFSL------NQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRAPLSGNCS 445 (453)
Q Consensus 375 l~~L~~L~l~~------n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~c~ 445 (453)
+++|+.|++++ |.+.+.+|..+..+++|++|++++|++ +.+|.. ..++|+.+++++|++...+....|+
T Consensus 775 L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCEEECGGGHH
T ss_pred CCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCccChHHccc
Confidence 99999999976 778889999999999999999999999 466765 3379999999999987665555443
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-40 Score=335.69 Aligned_cols=350 Identities=16% Similarity=0.177 Sum_probs=291.6
Q ss_pred CCccccCCCcccEEEcCCCccccc-----------------chhhHhh--cCCCeEEEEccCCcccC-CCcCccCCCCCc
Q 048417 29 FPSWLYSQKHLNYLDLSYSGIIGT-----------------IPNIFWS--SASQIYVLDLSFNQIHG-QIPNLTNAAQLE 88 (453)
Q Consensus 29 ~~~~l~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~ 88 (453)
.|..++++++|++|++++|.+++. +|..+ . .+++|++|++++|.+.+ .+..+.++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 567799999999999999999774 88877 5 89999999999998876 666789999999
Q ss_pred EEEccCCc-ccc-ccccc---------cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC
Q 048417 89 VLSLGSNS-FSI-ALPLI---------SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157 (453)
Q Consensus 89 ~L~l~~~~-~~~-~~~~~---------~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 157 (453)
+|++++|. +++ ..+.. +++|++|++++|.+. ..+. ...+..+++|++|++++|.+++.+| .+..+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~--~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV--ETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC--HHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc--hhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 99999998 776 44432 289999999999988 3332 0034579999999999999997888 78999
Q ss_pred CcccEEEcccCccCCCCCcccccccc-ccEEEccCCccccccccccccC--CCCEEeCCCCcccccCchHHHh------c
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLIS-LQSLHLRKNNLCGTIHSLENCT--ALMTLDVGENELVENIPTWIRE------R 228 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~------~ 228 (453)
++|++|++++|.+. .+|..+..+++ |+.|++++|.++.++..+...+ +|+.|++++|.+.+..|..+.. .
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 99999999999999 78888999999 9999999999997776666544 8999999999998766654320 4
Q ss_pred cCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccc--------ccccceeccccCcchhhhhhhhhc
Q 048417 229 FSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN--------LRAMVTMNSHAGKAIQYQFLLYAS 300 (453)
Q Consensus 229 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~l~i~~~~~~~~~~~~~~~ 300 (453)
+++|++|++++|.+....+..+..+++|++|++++|.+. .+|..+.. +++|+.|+++++.+..++.....
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~- 509 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA- 509 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST-
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhh-
Confidence 568999999999998655556777999999999999998 66654433 23999999999876543322110
Q ss_pred cchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEc------CCccCCCCCCccccC
Q 048417 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNL------SNNFFTGRIPESVGT 374 (453)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l------~~n~~~~~~~~~l~~ 374 (453)
..+++|+.|++++|.+++ +|..+..+++|+.|++ ++|.+.+.+|..+..
T Consensus 510 ------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 510 ------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp ------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred ------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 257889999999999996 8888999999999999 567788889999999
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 375 MRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 375 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
+++|++|++++|++. .+|..+. ++|++|++++|++..
T Consensus 565 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 565 CPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 999999999999995 7787765 899999999999884
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.9e-40 Score=332.13 Aligned_cols=419 Identities=19% Similarity=0.101 Sum_probs=320.9
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~ 83 (453)
+|..+. +++++|+|++|.+++..+.+|.++++|++|++++|.+++..|..+ ..+++|++|++++|.++.. +..+.+
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW-HGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh-hchhhcCEeECCCCcccccChhhcCC
Confidence 455443 789999999999988888899999999999999999966656665 8999999999999999886 667899
Q ss_pred CCCCcEEEccCCcccccccc---ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 84 AAQLEVLSLGSNSFSIALPL---ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
+++|++|++++|.+....+. .+++|++|++++|.+.... ++..++.+++|++|++++|.+++..+..+..+.+|
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC---CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee---chHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 99999999999999876533 3679999999999987522 23345579999999999999886666555555444
Q ss_pred c----EEEcccCccCCCCCccc----------------------------------------------------------
Q 048417 161 M----ILDLSNNKFTGNLPISL---------------------------------------------------------- 178 (453)
Q Consensus 161 ~----~L~l~~~~~~~~~~~~l---------------------------------------------------------- 178 (453)
+ ++++++|.+....+..+
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~ 259 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259 (606)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred ccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence 3 56666665553332222
Q ss_pred ----------------------cccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 179 ----------------------GSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 179 ----------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
..+++|+.|+++++.+..++ .+..+++|+.|++++|.+ +.++.. .+++|++|+
T Consensus 260 ~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~ 334 (606)
T 3vq2_A 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLT 334 (606)
T ss_dssp GSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEE
T ss_pred hccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC---CCCccceee
Confidence 23344555555555544333 566778999999999999 656643 789999999
Q ss_pred ecCCcccccCchhhcCCCCccEEEccCCcCCCC--cccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHH
Q 048417 237 LRSNKFYNLLPKELCDLAFLQIVDLADNNLSGE--VPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFV 314 (453)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (453)
+++|...... .+..+++|++|++++|.+.+. .+..+..+++|+.|+++++......... ..... +...... ..
T Consensus 335 l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~-L~~L~l~-~n 409 (606)
T 3vq2_A 335 LTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF-MGLEE-LQHLDFQ-HS 409 (606)
T ss_dssp EESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCC-TTCTT-CCEEECT-TS
T ss_pred ccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhc-cCCCC-CCeeECC-CC
Confidence 9999654433 567899999999999998854 3788999999999999999865544111 11110 1000000 00
Q ss_pred HhcCCcc-hhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCC-CCCccccCCCCCCEEEcCCCcCCCCC
Q 048417 315 VMKGREA-KYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG-RIPESVGTMRSLESIDFSLNQLSGEI 392 (453)
Q Consensus 315 ~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~ 392 (453)
.+..... ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..++.+++|++|++++|++.+..
T Consensus 410 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 489 (606)
T 3vq2_A 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS 489 (606)
T ss_dssp EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC
Confidence 1111122 456778999999999999988888889999999999999999986 37888999999999999999999888
Q ss_pred CccccCCCCCCEEEccCCcccccCCC-CcccceeecccCCCCCccCCC
Q 048417 393 PQSMSSLKFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGNDLCRAP 439 (453)
Q Consensus 393 ~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~n~l~~~~ 439 (453)
|..+..+++|++|++++|++++.+|. ...+++|+.+++++|.++..|
T Consensus 490 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 89999999999999999999987554 488999999999999865443
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-39 Score=334.98 Aligned_cols=370 Identities=14% Similarity=0.127 Sum_probs=297.2
Q ss_pred CCccccCCCcccEEEcCCCcccc-----------------cchhhH-hhcCCCeEEEEccCCcccC-CCcCccCCCCCcE
Q 048417 29 FPSWLYSQKHLNYLDLSYSGIIG-----------------TIPNIF-WSSASQIYVLDLSFNQIHG-QIPNLTNAAQLEV 89 (453)
Q Consensus 29 ~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~~ 89 (453)
+|..|+++++|++|+|++|.+++ .+|..+ |..+++|++|++++|.+.+ .+..+.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56789999999999999999977 388876 3489999999999998765 6667899999999
Q ss_pred EEccCCc-ccc-ccccc----------cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC
Q 048417 90 LSLGSNS-FSI-ALPLI----------SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY 157 (453)
Q Consensus 90 L~l~~~~-~~~-~~~~~----------~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 157 (453)
|++++|. +++ ..+.. +++|++|++++|.+. ..+. ...+..+++|++|++++|.++ .+| .+..+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~--~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA--SASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC--HHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC--hhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 9999998 776 33322 348999999999998 3332 014457999999999999999 788 78999
Q ss_pred CcccEEEcccCccCCCCCcccccccc-ccEEEccCCccccccccccccC--CCCEEeCCCCcccccCchHH--H--hccC
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLIS-LQSLHLRKNNLCGTIHSLENCT--ALMTLDVGENELVENIPTWI--R--ERFS 230 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~--~--~~~~ 230 (453)
++|++|++++|.+. .+|..+..+++ |+.|++++|.+..++..+...+ +|+.|++++|.+.+..+... . ...+
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 99999999999999 78888999999 9999999999997776666554 49999999999977544221 0 1235
Q ss_pred cceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccc--------ccccceeccccCcchhhhhhhhhccc
Q 048417 231 RIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHN--------LRAMVTMNSHAGKAIQYQFLLYASRA 302 (453)
Q Consensus 231 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~l~i~~~~~~~~~~~~~~~~~ 302 (453)
+|+.|++++|.+.......+..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.+..++....
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~---- 748 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR---- 748 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS----
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhh----
Confidence 8999999999998644445568999999999999998 77765443 3499999999987653332211
Q ss_pred hhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCC------ccCCCCCCccccCCC
Q 048417 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSN------NFFTGRIPESVGTMR 376 (453)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~l~~l~ 376 (453)
...+++|+.|++++|.+++ +|..+..+++|+.|++++ |.+.+.+|..+..++
T Consensus 749 ---------------------~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 749 ---------------------ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp ---------------------TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred ---------------------hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 0257889999999999995 788888999999999976 778888999999999
Q ss_pred CCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCC-CcccceeecccCCCCC
Q 048417 377 SLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGND 434 (453)
Q Consensus 377 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~n~ 434 (453)
+|++|++++|++ +.+|..+. ++|+.|++++|++....+. ......+..+.+.+|+
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 999999999999 58888765 6999999999999854332 2344455566666664
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=338.27 Aligned_cols=252 Identities=17% Similarity=0.166 Sum_probs=132.0
Q ss_pred ccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEE
Q 048417 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVD 260 (453)
Q Consensus 182 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 260 (453)
++|+.|++++|.+.+.. ..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+....+..+..+++|++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 35666666666655543 44566677777777777665543332 34567777777777777666666777777777777
Q ss_pred ccCCcCCCCcccccccccccceeccccCcchhhhhh------hhh-----ccchhhhh--hhhhHHHHhcC-Ccchhhhh
Q 048417 261 LADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFL------LYA-----SRAPLIAT--LLEDAFVVMKG-REAKYERT 326 (453)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~------~~~-----~~~~~~~~--~~~~~~~~~~~-~~~~~~~~ 326 (453)
+++|.+.+..+..+..+++|+.|+++++....+... ... ..+..... ........+.. .....+..
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~ 424 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTT
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhc
Confidence 777777655556677777777777777664432210 000 00000000 00000000000 01112335
Q ss_pred cCcccEEecCCCcCCCcCCc-cccCCCCCcEEEcCCccCCC-----CCCccccCCCCCCEEEcCCCcCCCCCCccccCCC
Q 048417 327 LNLVRIIDFSKNNFSGKIPL-EVTNLKVLQSVNLSNNFFTG-----RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLK 400 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 400 (453)
+++|++|++++|++++..+. .+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+++..+..+..++
T Consensus 425 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 504 (844)
T 3j0a_A 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504 (844)
T ss_dssp CTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred CCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence 67777777777777643222 23345556666666555541 2223345555555555555555555555555555
Q ss_pred CCCEEEccCCcccccCCCCcccceeecccCCCCCc
Q 048417 401 FLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDL 435 (453)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l 435 (453)
+|++|++++|++++.++..-. ++|+.+++++|.+
T Consensus 505 ~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 505 ALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp SCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred hhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 555555555555543333211 4444444444443
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.1e-39 Score=320.87 Aligned_cols=394 Identities=19% Similarity=0.148 Sum_probs=231.7
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcC-ccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~-l~~ 83 (453)
+|+.+. ++|++|++++|.+++..+.+|.++++|++|++++|++++..+..+ ..+++|++|++++|.+++.++. +.+
T Consensus 20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF-YSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc-cccccCCEEECCCCccCccCHHHhcc
Confidence 454432 578888888888777667777888888888888888755544554 7778888888888887776654 777
Q ss_pred CCCCcEEEccCCcccccc----ccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCc
Q 048417 84 AAQLEVLSLGSNSFSIAL----PLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQN 159 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 159 (453)
+++|++|++++|.+.... ...+++|++|++++|.+.+..+ ...+..+++|++|++++|.+++..|..+..+++
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR---RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC---TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC---HhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 778888888888776421 1235678888888776332211 123345777888888887777666777777777
Q ss_pred ccEEEcccCccCCCCCcc-ccccccccEEEccCCcccccc----ccccccCCCCEEeCCCCcccccCchHH---------
Q 048417 160 LMILDLSNNKFTGNLPIS-LGSLISLQSLHLRKNNLCGTI----HSLENCTALMTLDVGENELVENIPTWI--------- 225 (453)
Q Consensus 160 L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~--------- 225 (453)
|++|+++++.+. ..|.. +..+++|+.|++++|.+.+.. .....+++++.|+++++.+.+..+..+
T Consensus 174 L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 174 IHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred CceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 777777776655 22332 234566777777666665431 112233444444444443322111111
Q ss_pred -----------------------------------------------------HhccCcceEEEecCCcccccCchhh-c
Q 048417 226 -----------------------------------------------------RERFSRIVVLILRSNKFYNLLPKEL-C 251 (453)
Q Consensus 226 -----------------------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~-~ 251 (453)
+...++++.+++++|.+.. +|..+ .
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~ 331 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQ 331 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHH
T ss_pred ccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHh
Confidence 1112344444444444432 23222 3
Q ss_pred CCCCccEEEccCCcCCCCcc---cccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcC
Q 048417 252 DLAFLQIVDLADNNLSGEVP---RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328 (453)
Q Consensus 252 ~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (453)
.+++|++|++++|.+.+.+| ..+..+++|+.|+++++....+... ...+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------------~~~~~~l~ 387 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT------------------------GEILLTLK 387 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH------------------------HHHGGGCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc------------------------hhhhhcCC
Confidence 45556666666665554332 2245555556665555544332210 01123455
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcc------------------ccCCCCCCEEEcCCCcCCC
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES------------------VGTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~------------------l~~l~~L~~L~l~~n~l~~ 390 (453)
+|++|++++|.++ .+|..+..+++|+.|++++|.+. .++.. ...+++|++|++++|++.
T Consensus 388 ~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK- 464 (549)
T ss_dssp TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-
T ss_pred CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-
Confidence 6666666666665 44555555555666666665554 22221 135677777777777776
Q ss_pred CCCccccCCCCCCEEEccCCcccccCCC-CcccceeecccCCCCC
Q 048417 391 EIPQSMSSLKFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGND 434 (453)
Q Consensus 391 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~n~ 434 (453)
.+|. ...+++|++|++++|++++.++. ...+++|+.+++++|+
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 5554 34577777777777777766665 3677777777777775
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9e-39 Score=317.40 Aligned_cols=390 Identities=19% Similarity=0.185 Sum_probs=282.9
Q ss_pred ccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccC
Q 048417 4 KVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTN 83 (453)
Q Consensus 4 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~ 83 (453)
.+|+.+. ++|++|++++|.+++..+.+|.++++|++|++++|++++..|..+ ..+++|++|++++|+++..+.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKISCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSCCCEEECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCceeecCcc--c
Confidence 3666655 889999999999988777889999999999999999966666666 8899999999999999876555 7
Q ss_pred CCCCcEEEccCCccccc-ccc---ccccCcEEECcCCCCCCchhhhhhhhhcccCcc--cEEeccCCCC--CCCCchhhh
Q 048417 84 AAQLEVLSLGSNSFSIA-LPL---ISSYLIELDFSNNSISGSIFHFICYRANELNKW--QILYLSGNFL--QGELPDCWM 155 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~-~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~ 155 (453)
+++|++|++++|.+... .+. .+++|++|++++|.+... .+..+++| ++|++++|.+ .+..|..+.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-------hccccccceeeEEEeeccccccccccccccc
Confidence 88999999999998863 222 367899999999988752 23357777 9999999988 556666555
Q ss_pred cC--------------------------CcccEEEcccCc-------cCCCCCccccccccccEEEccCCcccccc-c--
Q 048417 156 NY--------------------------QNLMILDLSNNK-------FTGNLPISLGSLISLQSLHLRKNNLCGTI-H-- 199 (453)
Q Consensus 156 ~l--------------------------~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~-- 199 (453)
.+ ++|+.+++++|. +.+..+ .+..+++|+.|+++++.+.+.. .
T Consensus 162 ~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred ccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHH
Confidence 53 344444444433 221221 3344455555555554443211 0
Q ss_pred -cccccCCCCEEeCCCCcccccCchHHH----hccCcceEEEecCCcc--------------------------cccCch
Q 048417 200 -SLENCTALMTLDVGENELVENIPTWIR----ERFSRIVVLILRSNKF--------------------------YNLLPK 248 (453)
Q Consensus 200 -~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~--------------------------~~~~~~ 248 (453)
.....++|++|++++|.+.+..|..++ ..++.|+.+++.+|.+ ....
T Consensus 241 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-- 318 (520)
T 2z7x_B 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML-- 318 (520)
T ss_dssp HHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--
T ss_pred HHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--
Confidence 001134777888877777655554431 2344444444444433 2211
Q ss_pred hhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcC
Q 048417 249 ELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLN 328 (453)
Q Consensus 249 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (453)
....+++|++|++++|.+.+..|..+..+++|+.|+++++.+..+... ...+..++
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~------------------------~~~~~~l~ 374 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI------------------------AEMTTQMK 374 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH------------------------HHHHTTCT
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc------------------------hHHHhhCC
Confidence 015678899999999999887888899999999999998876543221 12235688
Q ss_pred cccEEecCCCcCCCcCCc-cccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 329 LVRIIDFSKNNFSGKIPL-EVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
+|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+.++..+. ++|+.|++++|++. .+|..+..+++|++|++
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEEC
Confidence 999999999999864554 478889999999999999877666554 79999999999999 78887779999999999
Q ss_pred cCCcccccCCC-CcccceeecccCCCCCc
Q 048417 408 SNNNLTGKIPS-STQLQSFDASSFSGNDL 435 (453)
Q Consensus 408 ~~n~l~~~~~~-~~~l~~L~~l~l~~n~l 435 (453)
++|++++..+. ...+++|+.+++++|++
T Consensus 452 ~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 452 ASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 99999965444 57899999999999953
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=316.84 Aligned_cols=428 Identities=19% Similarity=0.161 Sum_probs=320.7
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCC-cCccC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQI-PNLTN 83 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-~~l~~ 83 (453)
+|..+ .+++++|++++|.+++..+.+|.++++|++|++++|++.+..+.. +..+++|++|++++|.++..+ ..+.+
T Consensus 22 ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 22 IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp CCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccc-ccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 45433 357999999999998877888999999999999999995544444 488999999999999998755 56888
Q ss_pred CCCCcEEEccCCccccccc---cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 84 AAQLEVLSLGSNSFSIALP---LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 84 ~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
+.+|++|++++|.+..... ..+++|++|++++|.+.... ++..+..+++|++|++++|.+++..+..+..+.+|
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999999999998886544 34679999999999887521 22334569999999999999987667778888888
Q ss_pred ----cEEEcccCccCCCCCccccccccccEEEccCCcc------------------------------------------
Q 048417 161 ----MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL------------------------------------------ 194 (453)
Q Consensus 161 ----~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------------------------------------------ 194 (453)
+++++++|.+....+..+... +|+.|++++|..
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 889999999887666666544 788887776521
Q ss_pred ----------------cc-ccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCcc
Q 048417 195 ----------------CG-TIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQ 257 (453)
Q Consensus 195 ----------------~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 257 (453)
.+ .+..+..+++|+.|+++++.+.. ++..+. .+ +|++|++.+|.+.. +|. ..+++|+
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~-~~-~L~~L~l~~n~~~~-l~~--~~l~~L~ 328 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSY-NF-GWQHLELVNCKFGQ-FPT--LKLKSLK 328 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCS-CC-CCSEEEEESCBCSS-CCB--CBCSSCC
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhc-cC-CccEEeeccCcccc-cCc--ccccccC
Confidence 11 11345667888888888888753 555443 44 88889998888863 333 4678899
Q ss_pred EEEccCCcCCCCcccccccccccceeccccCcchhhh--hhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEec
Q 048417 258 IVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQ--FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDF 335 (453)
Q Consensus 258 ~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 335 (453)
+|++++|.+.+..+. ..+++|+.|+++++...... .......+. +..+... ...+... ...+..+++|++|++
T Consensus 329 ~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-L~~L~l~-~n~l~~~-~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLS-FNGVITM-SSNFLGLEQLEHLDF 403 (570)
T ss_dssp EEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSC-CCEEECC-SCSEEEE-EEEEETCTTCCEEEC
T ss_pred EEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCc-cCEEECC-CCccccc-cccccccCCCCEEEc
Confidence 999999888755554 78899999999998765432 111111100 0000000 0000111 112567889999999
Q ss_pred CCCcCCCcCC-ccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC-CCCCccccCCCCCCEEEccCCccc
Q 048417 336 SKNNFSGKIP-LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS-GEIPQSMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 336 ~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~ 413 (453)
++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|+++
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence 9999876555 46788999999999999999888888999999999999999987 468899999999999999999999
Q ss_pred ccCCC-CcccceeecccCCCCCccCCCCCC--CCCCCccC
Q 048417 414 GKIPS-STQLQSFDASSFSGNDLCRAPLSG--NCSEHVSI 450 (453)
Q Consensus 414 ~~~~~-~~~l~~L~~l~l~~n~l~~~~~~~--~c~~~~~~ 450 (453)
+..|. ...+++|+.+++++|.+++.+... .|+.++.+
T Consensus 484 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 87564 488999999999999998887643 55655543
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-37 Score=304.65 Aligned_cols=362 Identities=18% Similarity=0.171 Sum_probs=215.6
Q ss_pred CcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCcEEE
Q 048417 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLEVLS 91 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~~L~ 91 (453)
++|++|+|++|.+++..+..|.++++|++|++++|.+.+.++...+..+++|++|++++|.++.. +..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34555555555554444445555555555555555554344333334555555555555555442 33444445555555
Q ss_pred ccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchh-hhcCCcccEEEcccCcc
Q 048417 92 LGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDC-WMNYQNLMILDLSNNKF 170 (453)
Q Consensus 92 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 170 (453)
+++|. +.+..+.. ..+..+++|++|++++|.+++..|.. +..+++|++|++++|.+
T Consensus 110 L~~n~---------------------l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 110 LTQCN---------------------LDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CTTSC---------------------CBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCCC---------------------CCccccCc--ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 55554 43211111 11334666666666666666554543 56666677777777666
Q ss_pred CCCCCcccccc--ccccEEEccCCccccccc---------cccccCCCCEEeCCCCcccccCchHHHhc--cCcceEEEe
Q 048417 171 TGNLPISLGSL--ISLQSLHLRKNNLCGTIH---------SLENCTALMTLDVGENELVENIPTWIRER--FSRIVVLIL 237 (453)
Q Consensus 171 ~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~---------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l 237 (453)
.+..+..+..+ .+++.|++++|.+..... .+..+++|+.|++++|.+.+..+..+... .++++.+++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 65555555544 456666666666654431 12344567777777777665555444322 256777777
Q ss_pred cCCccccc----------Cchhhc--CCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhh
Q 048417 238 RSNKFYNL----------LPKELC--DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLI 305 (453)
Q Consensus 238 ~~~~~~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~ 305 (453)
++|...+. ....+. ..++|++|++++|.+.+..|..+..+++|+.|+++++.+.....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------- 316 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD---------- 316 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT----------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh----------
Confidence 76643221 111111 23567788888887776666677777776666666655332211
Q ss_pred hhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCC
Q 048417 306 ATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSL 385 (453)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 385 (453)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus 317 ----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 317 ----------------NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp ----------------TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ----------------hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC
Confidence 1223466678888888887766677777788888888888888766677777888888888888
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccc
Q 048417 386 NQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQ 423 (453)
Q Consensus 386 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~ 423 (453)
|++++..+..+..+++|++|++++|++++..|....+.
T Consensus 381 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~ 418 (455)
T 3v47_A 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 418 (455)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHH
T ss_pred CccccCCHhHhccCCcccEEEccCCCcccCCCcchHHH
Confidence 88876666667778888888888888887777654443
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=330.25 Aligned_cols=426 Identities=18% Similarity=0.117 Sum_probs=322.8
Q ss_pred CCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCcE
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLEV 89 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~~ 89 (453)
-.+++++|+|++|.+++..+..|.++++|++|++++|...+.++...+.++++|++|++++|.+... +..+.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4578999999999998888889999999999999999766777444459999999999999999875 667889999999
Q ss_pred EEccCCccccccc-----cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcC--CcccE
Q 048417 90 LSLGSNSFSIALP-----LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNY--QNLMI 162 (453)
Q Consensus 90 L~l~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~ 162 (453)
|++++|.+.+..+ ..+++|++|++++|.+....+. ..++.+++|++|++++|.+++..+..+..+ ++|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~---~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH---PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC---GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc---hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 9999999886432 2467999999999998764321 234579999999999999988788888777 89999
Q ss_pred EEcccCccCCCCCcccccccc------ccEEEccCCcccccc-c------------------------------------
Q 048417 163 LDLSNNKFTGNLPISLGSLIS------LQSLHLRKNNLCGTI-H------------------------------------ 199 (453)
Q Consensus 163 L~l~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~-~------------------------------------ 199 (453)
|++++|.+.+..|..+..+++ |+.|++++|.+.... .
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 999999998777776666555 999999988654321 0
Q ss_pred cccc--cCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccc
Q 048417 200 SLEN--CTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNL 277 (453)
Q Consensus 200 ~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 277 (453)
.+.+ .++++.|++++|.+.+..+.. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRV-FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCC-SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred hhhccccCCccEEECCCCcccccChhh-hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 1111 268999999999887654433 4578999999999999998888899999999999999999997778899999
Q ss_pred cccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCC--------------------
Q 048417 278 RAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSK-------------------- 337 (453)
Q Consensus 278 ~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-------------------- 337 (453)
++|+.|+++++.+.......+...+....- .+.......+..+++|+.|++++
T Consensus 338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-------~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTL-------DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp TTCCEEECCSCCCCCCCSSCSCSCCCCCEE-------EEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCccChhhhcCCCCCCEE-------ECCCCCCCcccCCCCcchhccCCCCcccccccccccceeeccc
Confidence 999999999987644433211111110000 00001111111233444444444
Q ss_pred CcCCCcC-CccccCCCCCcEEEcCCccCCCCCC-ccccCCCCCCEEEcCCCcCC-----CCCCccccCCCCCCEEEccCC
Q 048417 338 NNFSGKI-PLEVTNLKVLQSVNLSNNFFTGRIP-ESVGTMRSLESIDFSLNQLS-----GEIPQSMSSLKFLNHLNLSNN 410 (453)
Q Consensus 338 ~~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n 410 (453)
|++++.. +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+. +..+..+..+++|++|++++|
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred CccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 4433211 1224478999999999999985443 24567899999999999987 344567889999999999999
Q ss_pred cccccCCCC-cccceeecccCCCCCccCCCCCCCCCCC
Q 048417 411 NLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCSEH 447 (453)
Q Consensus 411 ~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~~~ 447 (453)
++++.++.. ..+++|+.+++++|.+++.|.....+.+
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L 528 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCC
T ss_pred cccccChhHccchhhhheeECCCCCCCccChhhhhccc
Confidence 999887775 8899999999999999888765544433
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-36 Score=304.66 Aligned_cols=382 Identities=19% Similarity=0.187 Sum_probs=235.8
Q ss_pred cccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCcEEEc
Q 048417 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLEVLSL 92 (453)
Q Consensus 14 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~~L~l 92 (453)
..++++++++.++. +|..+. ++|++|++++|.+++..+..+ ..+++|++|++++|+++.. +..+.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDI-SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGT-TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhh-ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 33555666555543 333222 555666666665533333333 5555666666666655543 334555556666666
Q ss_pred cCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc--cEEEcccCcc
Q 048417 93 GSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL--MILDLSNNKF 170 (453)
Q Consensus 93 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 170 (453)
++|.+.......+++|++|++++|.+..... +..++.+++|++|++++|.++.. .+..+++| ++|++++|.+
T Consensus 108 s~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~---p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQNISCCPMASLRHLDLSFNDFDVLPV---CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCEECSCCCTTCSEEECCSSCCSBCCC---CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCccCccccccCCEEECCCCCccccCc---hHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 6665554333345556666666555543211 11223455566666665555431 12333333 5555555555
Q ss_pred --CCCCCccc--------------------------cccccccEEEccCCcc-----cccccccccc-------------
Q 048417 171 --TGNLPISL--------------------------GSLISLQSLHLRKNNL-----CGTIHSLENC------------- 204 (453)
Q Consensus 171 --~~~~~~~l--------------------------~~l~~L~~L~l~~~~~-----~~~~~~~~~~------------- 204 (453)
.+..|..+ ..+++|+.+++++|.. .+....+..+
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 33333332 2345666666666531 1111111222
Q ss_pred --------------CCCCEEeCCCCcccccCchHHH----hcc--------------------------CcceEEEecCC
Q 048417 205 --------------TALMTLDVGENELVENIPTWIR----ERF--------------------------SRIVVLILRSN 240 (453)
Q Consensus 205 --------------~~L~~L~l~~~~~~~~~~~~~~----~~~--------------------------~~L~~L~l~~~ 240 (453)
++|++|++++|.+.+.+|..++ ..+ .++++|++++|
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 3566666666666544443221 011 23455555555
Q ss_pred cccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCc
Q 048417 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGRE 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (453)
.+.... ....+++|++|++++|.+.+..|..+..+++|+.|+++++....+...
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------ 395 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV------------------------ 395 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHH------------------------
T ss_pred Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccc------------------------
Confidence 442211 116778999999999999988899999999999999999876543321
Q ss_pred chhhhhcCcccEEecCCCcCCCcCC-ccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCC
Q 048417 321 AKYERTLNLVRIIDFSKNNFSGKIP-LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSL 399 (453)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 399 (453)
...+..+++|++|++++|.+++.+| ..+..+++|+.|++++|.+++.++..+. ++|+.|++++|+++ .+|..+..+
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l 472 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence 1123557889999999999987344 4578899999999999999866665443 79999999999999 677777799
Q ss_pred CCCCEEEccCCcccccCCC-CcccceeecccCCCCC
Q 048417 400 KFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGND 434 (453)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~n~ 434 (453)
++|++|++++|++++.++. ...+++|+.+++++|+
T Consensus 473 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 9999999999999965555 6889999999999996
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-36 Score=303.79 Aligned_cols=398 Identities=16% Similarity=0.120 Sum_probs=245.5
Q ss_pred cccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC--CCcC
Q 048417 3 LKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG--QIPN 80 (453)
Q Consensus 3 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~--~~~~ 80 (453)
+..|..+.++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..+..+ +.+++|++|++++|.++. .+..
T Consensus 40 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~ 118 (549)
T 2z81_A 40 YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF-GPLSSLKYLNLMGNPYQTLGVTSL 118 (549)
T ss_dssp EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH-TTCTTCCEEECTTCCCSSSCSSCS
T ss_pred ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh-ccCCCCcEEECCCCcccccchhhh
Confidence 3456789999999999999999988888899999999999999999966555555 899999999999999985 3567
Q ss_pred ccCCCCCcEEEccCCccccccc----cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchh-hh
Q 048417 81 LTNAAQLEVLSLGSNSFSIALP----LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDC-WM 155 (453)
Q Consensus 81 l~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~ 155 (453)
+.++++|++|++++|.+.+..+ ..+++|++|++++|.+.+..+..+ ..+++|++|+++++.+. ..+.. +.
T Consensus 119 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~~~-~~~~~~~~ 193 (549)
T 2z81_A 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL----KSIRDIHHLTLHLSESA-FLLEIFAD 193 (549)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----TTCSEEEEEEEECSBST-THHHHHHH
T ss_pred hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh----hccccCceEecccCccc-ccchhhHh
Confidence 8899999999999998443322 236789999999998876444333 34566666666665554 23322 23
Q ss_pred cCCcccEEEcccCccCCCC--Cc-cc----------------------------cccccccEEEccCCcccccc------
Q 048417 156 NYQNLMILDLSNNKFTGNL--PI-SL----------------------------GSLISLQSLHLRKNNLCGTI------ 198 (453)
Q Consensus 156 ~l~~L~~L~l~~~~~~~~~--~~-~l----------------------------~~l~~L~~L~l~~~~~~~~~------ 198 (453)
.+++|++|++++|.+.+.. +. .. ..+++|+.+++++|.+.+..
T Consensus 194 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 4556666666665554321 00 00 11122222222222221110
Q ss_pred ------------------------------ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCch
Q 048417 199 ------------------------------HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPK 248 (453)
Q Consensus 199 ------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 248 (453)
.......+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+.
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~ 352 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK 352 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH
T ss_pred hhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc
Confidence 00011234555555555542 34444444455555555555555443221
Q ss_pred ---hhcCCCCccEEEccCCcCCCCcc--cccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchh
Q 048417 249 ---ELCDLAFLQIVDLADNNLSGEVP--RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKY 323 (453)
Q Consensus 249 ---~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (453)
.+..+++|++|++++|.+++..+ ..+..+++|+.|++++|+...++..... ...+..+.... ..+.. ..
T Consensus 353 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~--~~~L~~L~Ls~-N~l~~---l~ 426 (549)
T 2z81_A 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW--PEKMRFLNLSS-TGIRV---VK 426 (549)
T ss_dssp HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCC--CTTCCEEECTT-SCCSC---CC
T ss_pred chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcc--cccccEEECCC-CCccc---cc
Confidence 23444555555555555542211 2344555555555555543322211000 00000000000 00000 00
Q ss_pred hhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCC
Q 048417 324 ERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLN 403 (453)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 403 (453)
...+++|++|++++|++++.. ..+++|+.|++++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+
T Consensus 427 ~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 427 TCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp TTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred chhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 011357899999999887532 46899999999999998 7776 46799999999999999988888899999999
Q ss_pred EEEccCCcccccCCCC
Q 048417 404 HLNLSNNNLTGKIPSS 419 (453)
Q Consensus 404 ~L~l~~n~l~~~~~~~ 419 (453)
+|++++|++.+..+..
T Consensus 501 ~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 501 KIWLHTNPWDCSCPRI 516 (549)
T ss_dssp EEECCSSCBCCCHHHH
T ss_pred EEEecCCCccCCCccH
Confidence 9999999999876643
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=301.81 Aligned_cols=374 Identities=17% Similarity=0.175 Sum_probs=290.2
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC--CCcCcc
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG--QIPNLT 82 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~--~~~~l~ 82 (453)
.|..+.++++|++|+|++|.+++..|.+|.++++|++|++++|+++ .+|.. .+++|++|++++|.++. .+..+.
T Consensus 37 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 37 WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhc
Confidence 3456889999999999999998887889999999999999999994 67665 78999999999999986 356889
Q ss_pred CCCCCcEEEccCCccccccccccccC--cEEECcCCCC--CCchhhhhhh----------------------hhcccCcc
Q 048417 83 NAAQLEVLSLGSNSFSIALPLISSYL--IELDFSNNSI--SGSIFHFICY----------------------RANELNKW 136 (453)
Q Consensus 83 ~~~~L~~L~l~~~~~~~~~~~~~~~L--~~L~l~~~~l--~~~~~~~~~~----------------------~~~~~~~L 136 (453)
++++|++|++++|.+.......++.| ++|++++|.+ .+..+..+.. .+..+++|
T Consensus 113 ~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp GCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred cCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 99999999999999987555567777 9999999887 4333332222 12235555
Q ss_pred cEEeccCCC-------CCCCCchhhhc---------------------------CCcccEEEcccCccCCCCCccc----
Q 048417 137 QILYLSGNF-------LQGELPDCWMN---------------------------YQNLMILDLSNNKFTGNLPISL---- 178 (453)
Q Consensus 137 ~~L~l~~~~-------~~~~~~~~l~~---------------------------l~~L~~L~l~~~~~~~~~~~~l---- 178 (453)
+.+++++|. +.+..+ .+.. .++|++|++++|.+.+..|..+
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred eeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence 666655553 111111 1222 3467777777777776777766
Q ss_pred -cccccccEEEccCCcccccc-cccccc---CCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCC
Q 048417 179 -GSLISLQSLHLRKNNLCGTI-HSLENC---TALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDL 253 (453)
Q Consensus 179 -~~l~~L~~L~l~~~~~~~~~-~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 253 (453)
..+++|+.+++++|.+ ..+ ..+..+ .+++.|++++|.+..... ...+++|++|++++|.+.+..+..+..+
T Consensus 272 ~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 347 (520)
T 2z7x_B 272 GTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHL 347 (520)
T ss_dssp SCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCC
T ss_pred cccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccC
Confidence 7777888888887777 333 233222 568888888887754221 1467899999999999998888899999
Q ss_pred CCccEEEccCCcCCC--CcccccccccccceeccccCcchh-hhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcc
Q 048417 254 AFLQIVDLADNNLSG--EVPRCIHNLRAMVTMNSHAGKAIQ-YQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLV 330 (453)
Q Consensus 254 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (453)
++|++|++++|.+.+ .+|..+..+++|+.|+++++.... ++.. .+..+++|
T Consensus 348 ~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~--------------------------~~~~l~~L 401 (520)
T 2z7x_B 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--------------------------DCSWTKSL 401 (520)
T ss_dssp SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC--------------------------SCCCCTTC
T ss_pred CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc--------------------------hhccCccC
Confidence 999999999999985 556789999999999999987554 2221 12346889
Q ss_pred cEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCc-cccCCCCCCEEEccC
Q 048417 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ-SMSSLKFLNHLNLSN 409 (453)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~ 409 (453)
++|++++|.+++..+..+. ++|+.|++++|++. .+|..+..+++|++|++++|+++ .+|. .+..+++|++|++++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcC
Confidence 9999999999877766654 79999999999999 88888889999999999999999 5555 489999999999999
Q ss_pred CcccccCC
Q 048417 410 NNLTGKIP 417 (453)
Q Consensus 410 n~l~~~~~ 417 (453)
|++++..+
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 99986543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.5e-35 Score=291.24 Aligned_cols=367 Identities=17% Similarity=0.138 Sum_probs=270.9
Q ss_pred cCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCC
Q 048417 5 VNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNA 84 (453)
Q Consensus 5 l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~ 84 (453)
+|..+. ++|++|++++|.+++..+.+|.++++|++|++++|++++..|..+ ..+++|++|++++|.++..+.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF-LFNQDLEYLDVSHNRLQNISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT-TTCTTCCEEECTTSCCCEECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh-CCCCCCCEEECCCCcCCccCcc--cc
Confidence 565443 789999999999988777899999999999999999966656665 8899999999999999876655 78
Q ss_pred CCCcEEEccCCcccccc-c---cccccCcEEECcCCCCCCchhhhhhhhhcccCcc--cEEeccCCCC--CCCCchhhhc
Q 048417 85 AQLEVLSLGSNSFSIAL-P---LISSYLIELDFSNNSISGSIFHFICYRANELNKW--QILYLSGNFL--QGELPDCWMN 156 (453)
Q Consensus 85 ~~L~~L~l~~~~~~~~~-~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~~ 156 (453)
++|++|++++|.+.... + ..+++|++|++++|.+..... ..+++| ++|++++|.+ ++..|..+..
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL-------LPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT-------GGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCch-------hhhhhceeeEEEeecccccccccCcccccc
Confidence 89999999999988743 2 236789999999998875322 234555 9999998887 5444444433
Q ss_pred --------------------------CCcccEEEcccCc----------------------------cCC----CCCccc
Q 048417 157 --------------------------YQNLMILDLSNNK----------------------------FTG----NLPISL 178 (453)
Q Consensus 157 --------------------------l~~L~~L~l~~~~----------------------------~~~----~~~~~l 178 (453)
+++|+.+++++|. +.+ ..+..
T Consensus 194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~- 272 (562)
T 3a79_B 194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF- 272 (562)
T ss_dssp CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-
T ss_pred cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-
Confidence 2334444444431 000 00000
Q ss_pred cccccccEEEccCCcccc-ccccc-----c--------------------------ccCCCCEEeCCCCcccccCchHHH
Q 048417 179 GSLISLQSLHLRKNNLCG-TIHSL-----E--------------------------NCTALMTLDVGENELVENIPTWIR 226 (453)
Q Consensus 179 ~~l~~L~~L~l~~~~~~~-~~~~~-----~--------------------------~~~~L~~L~l~~~~~~~~~~~~~~ 226 (453)
...++|++|++++|.+.+ ++..+ . ...+++.|++++|.+..... .
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~ 349 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC---P 349 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC---C
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC---c
Confidence 011245555555554442 11111 1 12457788888877643221 1
Q ss_pred hccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCC--CcccccccccccceeccccCcchh-hhhhhhhccch
Q 048417 227 ERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSG--EVPRCIHNLRAMVTMNSHAGKAIQ-YQFLLYASRAP 303 (453)
Q Consensus 227 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~i~~~~~~~-~~~~~~~~~~~ 303 (453)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|+.|+++++.... ++.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------- 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-------- 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS--------
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh--------
Confidence 467899999999999998888899999999999999999985 335678999999999999987543 221
Q ss_pred hhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEc
Q 048417 304 LIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDF 383 (453)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 383 (453)
..+..+++|++|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 422 ------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 422 ------------------RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp ------------------CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred ------------------hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 1234578899999999999866665554 79999999999998 78877779999999999
Q ss_pred CCCcCCCCCCcc-ccCCCCCCEEEccCCcccccCC
Q 048417 384 SLNQLSGEIPQS-MSSLKFLNHLNLSNNNLTGKIP 417 (453)
Q Consensus 384 ~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 417 (453)
++|+++ .+|.. +..+++|++|++++|++.+..+
T Consensus 481 ~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 481 ASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 999999 55554 9999999999999999997654
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.1e-34 Score=279.58 Aligned_cols=345 Identities=23% Similarity=0.257 Sum_probs=254.5
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEE
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLS 91 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~ 91 (453)
+++++.|+++++.++. .+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 6789999999998855 33 47889999999999999855443 4889999999999999987666 88899999999
Q ss_pred ccCCccccccc-cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCcc
Q 048417 92 LGSNSFSIALP-LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKF 170 (453)
Q Consensus 92 l~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 170 (453)
+++|.+....+ ..+++|++|++++|.+.... .+..+++|++|++++ .+... + .+..+++|++|++++|.+
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~-~~~~~-~-~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN-QVTDL-K-PLANLTTLERLDISSNKV 189 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEE-SCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCC-cccCc-h-hhccCCCCCEEECcCCcC
Confidence 99998876543 33678889999888877532 245688899988863 44422 2 378888999999999888
Q ss_pred CCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhh
Q 048417 171 TGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250 (453)
Q Consensus 171 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 250 (453)
.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+.+..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch--hhhcCCCCCEEECCCCccccchh--h
Confidence 743 347788889999998888876554 6678889999998888755 22 23467888888888888876543 7
Q ss_pred cCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcc
Q 048417 251 CDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLV 330 (453)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (453)
..+++|++|++++|.+.+. +. +..+++|+.|+++++....... +..+++|
T Consensus 262 ~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~----------------------------~~~l~~L 311 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP----------------------------ISNLKNL 311 (466)
T ss_dssp TTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG----------------------------GGGCTTC
T ss_pred hcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh----------------------------hcCCCCC
Confidence 7888888888888888743 33 6677777777777765432211 2346677
Q ss_pred cEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCC
Q 048417 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410 (453)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 410 (453)
++|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|++.+..| +..+++|++|++++|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 777777777765444 55677777777777777643 456677777777777777775544 667777777777777
Q ss_pred ccccc
Q 048417 411 NLTGK 415 (453)
Q Consensus 411 ~l~~~ 415 (453)
.+++.
T Consensus 386 ~~~~~ 390 (466)
T 1o6v_A 386 AWTNA 390 (466)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 77753
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.7e-35 Score=285.83 Aligned_cols=349 Identities=18% Similarity=0.151 Sum_probs=243.3
Q ss_pred cccCCCCcCCCcccEEEccCCcCCCC-CCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCc-
Q 048417 3 LKVNDNWIPPFQLATLGLRHCHLGSR-FPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIP- 79 (453)
Q Consensus 3 ~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~- 79 (453)
+..|..+.++++|++|++++|.+.+. .+.+|.++++|++|++++|++.+..|..+ +.+++|++|++++|.+++ .+.
T Consensus 44 ~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~ 122 (455)
T 3v47_A 44 ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCNLDGAVLSG 122 (455)
T ss_dssp EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSCCBTHHHHS
T ss_pred cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCCCCccccCc
Confidence 34578899999999999999998644 46779999999999999999977667776 889999999999999986 233
Q ss_pred -CccCCCCCcEEEccCCcccccccc----ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchh-
Q 048417 80 -NLTNAAQLEVLSLGSNSFSIALPL----ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDC- 153 (453)
Q Consensus 80 -~l~~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~- 153 (453)
.+..+++|++|++++|.+....+. .+++|++|++++|.+....+..+... ...+++.++++++.+.+..+..
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~~~L~~L~l~~n~l~~~~~~~~ 200 (455)
T 3v47_A 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF--QGKHFTLLRLSSITLQDMNEYWL 200 (455)
T ss_dssp STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG--TTCEEEEEECTTCBCTTCSTTCT
T ss_pred ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc--ccccccccccccCcccccchhhc
Confidence 378889999999999998876443 25678888888887765544333221 1257777888877776433322
Q ss_pred -------hhcCCcccEEEcccCccCCCCCcccccc---ccccEEEccCCccccccccccccCCCCEEeCCCCcccccCch
Q 048417 154 -------WMNYQNLMILDLSNNKFTGNLPISLGSL---ISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPT 223 (453)
Q Consensus 154 -------l~~l~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 223 (453)
+..+++|++|++++|.+.+..|..+... .+++.|++++|...+.......+..+ ...
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------------~~~ 267 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP-------------DNF 267 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC-------------CTT
T ss_pred cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC-------------ccc
Confidence 2245677777777777765555544332 66777777766543321111000000 000
Q ss_pred HH-HhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccc
Q 048417 224 WI-RERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRA 302 (453)
Q Consensus 224 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~ 302 (453)
.+ .-..++|+.+++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|+++++......
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------- 339 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-------- 339 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC--------
Confidence 00 001245666666666666655666666666666666666666555556666666666666665432221
Q ss_pred hhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEE
Q 048417 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESID 382 (453)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 382 (453)
...+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|+
T Consensus 340 ------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 340 ------------------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp ------------------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ------------------hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence 12234577899999999999988888999999999999999999966667789999999999
Q ss_pred cCCCcCCCCCC
Q 048417 383 FSLNQLSGEIP 393 (453)
Q Consensus 383 l~~n~l~~~~~ 393 (453)
+++|++....|
T Consensus 402 l~~N~l~~~~~ 412 (455)
T 3v47_A 402 LHTNPWDCSCP 412 (455)
T ss_dssp CCSSCBCCCTT
T ss_pred ccCCCcccCCC
Confidence 99999997665
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.2e-34 Score=289.21 Aligned_cols=419 Identities=19% Similarity=0.157 Sum_probs=251.7
Q ss_pred CcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-CccCCCCCcEEE
Q 048417 13 FQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLS 91 (453)
Q Consensus 13 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-~l~~~~~L~~L~ 91 (453)
+++++|||++|.+++..+.+|.++++|++|+|++|++ ..++...|.++++|++|+|++|+++..++ .+.++.+|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 4688888888888777777888888888888888888 44544444888888888888888887654 467888888888
Q ss_pred ccCCcccccccc---ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc----cEEE
Q 048417 92 LGSNSFSIALPL---ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL----MILD 164 (453)
Q Consensus 92 l~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~ 164 (453)
+++|.++..... .+++|++|++++|.+.... .+..+..+++|++|++++|++++..+..+..+.++ ..++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 888888766543 3568888888888876432 12233468888888888888876555555444332 2455
Q ss_pred cccCccCCCCCccccccccccEEEccC-----------------------------------------------------
Q 048417 165 LSNNKFTGNLPISLGSLISLQSLHLRK----------------------------------------------------- 191 (453)
Q Consensus 165 l~~~~~~~~~~~~l~~l~~L~~L~l~~----------------------------------------------------- 191 (453)
++.+.+....+..+ ....++.+++.+
T Consensus 208 ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 208 LSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp CTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred cccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 55555442221111 111111221111
Q ss_pred -----------------------------CccccccccccccCCCCEEeCCCCcccccCchHH-----------------
Q 048417 192 -----------------------------NNLCGTIHSLENCTALMTLDVGENELVENIPTWI----------------- 225 (453)
Q Consensus 192 -----------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------- 225 (453)
+.+... ..+.....++.|++.++.+........
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 111100 011122334444444443322111000
Q ss_pred -HhccCcceEEEecCCcccc--cCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhh-hhcc
Q 048417 226 -RERFSRIVVLILRSNKFYN--LLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLL-YASR 301 (453)
Q Consensus 226 -~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~-~~~~ 301 (453)
...+++|+.++++.|.+.. ..+..+..+.+++.+++..+... ..+..+..+++++.+++..+......... +...
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccc
Confidence 0012333333333333211 11222223333333333333332 22233344444444444433322211110 0000
Q ss_pred chhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCC-CcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCE
Q 048417 302 APLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFS-GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLES 380 (453)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 380 (453)
... .................+..++.|+.|++++|... ...|..+..+++|+.|++++|++.+..|.+|.++++|++
T Consensus 445 ~~l--~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 445 RNL--IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TTC--CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccc--ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 000 00000011112223445566788999999998753 357788999999999999999999888899999999999
Q ss_pred EEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-ccc-ceeecccCCCCCccCCCCCCCCC
Q 048417 381 IDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQL-QSFDASSFSGNDLCRAPLSGNCS 445 (453)
Q Consensus 381 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l-~~L~~l~l~~n~l~~~~~~~~c~ 445 (453)
|++++|++++..+..|..+++|++|++++|++++.+|.. ..+ ++|+.+++++| |++|+|.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N-----p~~C~C~ 584 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN-----DFACTCE 584 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC-----CBCCSGG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC-----CCcccCC
Confidence 999999999888889999999999999999999877765 555 68999999999 6667775
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.3e-34 Score=277.88 Aligned_cols=370 Identities=22% Similarity=0.205 Sum_probs=172.5
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCC-------------eEEEEccCCcccCCC
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQ-------------IYVLDLSFNQIHGQI 78 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-------------L~~L~ls~~~~~~~~ 78 (453)
.++|++|++++|.+ +..|..++++++|++|++++|.+.+.+|..+ +.+++ +++|++++|.+++.+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 45566666666666 4555566666666666666666655555544 33333 356666666555433
Q ss_pred cCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCC
Q 048417 79 PNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQ 158 (453)
Q Consensus 79 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 158 (453)
.. .++|++|++++|.+++ .+..+++|++|++++|.+.+.. . -.++|++|++++|.+++ +| .+..++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~-----~---~~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALS-----D---LPPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCC-----S---CCTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCccc-----C---CCCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 31 2456666666666554 2333455666666665554211 0 02456666666665553 44 355556
Q ss_pred cccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEec
Q 048417 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILR 238 (453)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 238 (453)
+|++|++++|.+.+ +|..+ ++|++|++++|.+++++ .+..+++|+.|++++|.+.+ ++. ..++|++|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCC----CcCcccEEECc
Confidence 66666666665552 33221 35566666666555533 45555566666666555543 221 12355555665
Q ss_pred CCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcC
Q 048417 239 SNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKG 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (453)
+|.+. .+| .+..+++|++|++++|.+. .+|.. .++|+.|+++++....++... ..+... .+..
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~l~~~~-----~~L~~L------~ls~ 286 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDLPELP-----QSLTFL------DVSE 286 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSCCCCCC-----TTCCEE------ECCS
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccccCccc-----CcCCEE------ECcC
Confidence 55554 233 2555555556666555555 23322 245555555555433221110 000000 0000
Q ss_pred Ccchhh-hhcCcccEEecCCCcCCCcCCccccCC-CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccc
Q 048417 319 REAKYE-RTLNLVRIIDFSKNNFSGKIPLEVTNL-KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM 396 (453)
Q Consensus 319 ~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 396 (453)
.....+ ..+++|+.|++++|.+++ ++ .+ ++|+.|++++|++.+ +|.. +++|++|++++|+++ .+|.
T Consensus 287 N~l~~l~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-- 354 (454)
T 1jl5_A 287 NIFSGLSELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-- 354 (454)
T ss_dssp SCCSEESCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--
T ss_pred CccCcccCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--
Confidence 000000 112467777777777663 22 22 478888888888773 5543 577888888888887 4555
Q ss_pred cCCCCCCEEEccCCcccc--cCCC-Cccc-------------ceeecccCCCCCccC
Q 048417 397 SSLKFLNHLNLSNNNLTG--KIPS-STQL-------------QSFDASSFSGNDLCR 437 (453)
Q Consensus 397 ~~l~~L~~L~l~~n~l~~--~~~~-~~~l-------------~~L~~l~l~~n~l~~ 437 (453)
.+++|++|++++|++++ .+|. +..+ ++|+.+++++|++.+
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 46788888888888876 3443 3444 678888888888765
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-32 Score=268.78 Aligned_cols=326 Identities=22% Similarity=0.269 Sum_probs=271.9
Q ss_pred CCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCC
Q 048417 8 NWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQL 87 (453)
Q Consensus 8 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L 87 (453)
.+..+++|++|++++|.+++.. . +.++++|++|++++|++.+..+ +..+++|++|++++|.++..++ +.++++|
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 4678999999999999997653 3 9999999999999999965544 4899999999999999987654 8899999
Q ss_pred cEEEccCCccccccc-cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 88 EVLSLGSNSFSIALP-LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 88 ~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
++|++++|.+..... ..+++|++|+++++ +.... .+..+++|++|++++|.++. . ..+..+++|++|+++
T Consensus 137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~-~~~~~------~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 137 NRLELSSNTISDISALSGLTSLQQLSFGNQ-VTDLK------PLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIAT 207 (466)
T ss_dssp SEEEEEEEEECCCGGGTTCTTCSEEEEEES-CCCCG------GGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECC
T ss_pred CEEECCCCccCCChhhccCCcccEeecCCc-ccCch------hhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEec
Confidence 999999999876432 33679999999743 33211 24579999999999999884 3 348899999999999
Q ss_pred cCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccC
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 246 (453)
+|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..
T Consensus 208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 208 NNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCG
T ss_pred CCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCccc
Confidence 999986544 77899999999999998865 467788999999999999876444 457899999999999997754
Q ss_pred chhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhh
Q 048417 247 PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERT 326 (453)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (453)
+ +..+++|++|++++|.+.+..+ +..+++|+.|+++++....... +..
T Consensus 282 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----------------------------~~~ 329 (466)
T 1o6v_A 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP----------------------------VSS 329 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG----------------------------GGG
T ss_pred c--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh----------------------------hcc
Confidence 4 8889999999999999985433 7899999999999987543322 245
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCC
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 390 (453)
+++|++|++++|.+++. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|.+++
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 78899999999999854 468889999999999999986655 8899999999999999985
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-32 Score=267.46 Aligned_cols=229 Identities=18% Similarity=0.118 Sum_probs=170.4
Q ss_pred CCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCC
Q 048417 7 DNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQ 86 (453)
Q Consensus 7 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~ 86 (453)
..+.++++|++|++++|.+++. | .+..+++|++|++++|++++ ++ +..+++|++|++++|.+++.+ +.++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCc
Confidence 3456688899999999988664 4 68888999999999998855 44 377888999999999888753 778888
Q ss_pred CcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 87 LEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
|++|++++|.+.......+++|++|++++|.+.+. .+..+++|++|++++|...+.. .+..+++|++|+++
T Consensus 108 L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp CCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CCEEECCCCcCCeecCCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999888876545577888888888887753 1446888888888888544344 36778888888888
Q ss_pred cCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccC
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 246 (453)
+|.+++ .| +..+++|+.|++++|.+++. .+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+.+..
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC
Confidence 888875 33 67788888888888888765 36777888888888888866 44 346778888888888877654
Q ss_pred chhhcCCCCccEEEccCC
Q 048417 247 PKELCDLAFLQIVDLADN 264 (453)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~ 264 (453)
+ ..+++|+.|+++++
T Consensus 250 ~---~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 250 V---STLSKLTTLHCIQT 264 (457)
T ss_dssp C---TTCTTCCEEECTTC
T ss_pred H---HHCCCCCEEeccCC
Confidence 3 33444444444433
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.2e-33 Score=281.40 Aligned_cols=429 Identities=21% Similarity=0.169 Sum_probs=272.2
Q ss_pred ccCCCCcCCCcc---cEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-
Q 048417 4 KVNDNWIPPFQL---ATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP- 79 (453)
Q Consensus 4 ~l~~~~~~~~~L---~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~- 79 (453)
.+|+.+..|... .+.+=++-+++. +|..+. +++++|+|++|+++ .++...|.++++|++|++++|+++..++
T Consensus 19 ~~p~~~~~c~~~~~~~~~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~ 94 (635)
T 4g8a_A 19 SIPESWEPCVEVVPNITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDG 94 (635)
T ss_dssp ------CCSEEEETTTEEECTTSCCSS-CCSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCccccCCCCEEECCCCCcCc-cCCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChh
Confidence 467777666433 244444444533 444332 47999999999995 4554444999999999999999998655
Q ss_pred CccCCCCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCC-CCchhhh
Q 048417 80 NLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQG-ELPDCWM 155 (453)
Q Consensus 80 ~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~ 155 (453)
.+.++++|++|++++|++....+.. +++|++|++++|.+...... .++.+++|++|++++|.++. ..|..+.
T Consensus 95 ~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 170 (635)
T 4g8a_A 95 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFS 170 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC----CCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh----hhhcCcccCeeccccCccccCCCchhhc
Confidence 5889999999999999998766544 57999999999998864333 34579999999999999875 3577888
Q ss_pred cCCcccEEEcccCccCCCCCccccccccc----cEEEccCCccccccccccccCCCCEEeCCCCccccc-----------
Q 048417 156 NYQNLMILDLSNNKFTGNLPISLGSLISL----QSLHLRKNNLCGTIHSLENCTALMTLDVGENELVEN----------- 220 (453)
Q Consensus 156 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----------- 220 (453)
.+++|++|++++|.+.+..+..+..+.++ ..++++.|.+..+.........++.+++.++.....
T Consensus 171 ~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~ 250 (635)
T 4g8a_A 171 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 250 (635)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTT
T ss_pred cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcc
Confidence 99999999999999997777777655443 467788887765432221111222222221110000
Q ss_pred ----------------------------------------------CchHHHhc----------------------cCcc
Q 048417 221 ----------------------------------------------IPTWIRER----------------------FSRI 232 (453)
Q Consensus 221 ----------------------------------------------~~~~~~~~----------------------~~~L 232 (453)
.....+.. ...+
T Consensus 251 l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L 330 (635)
T 4g8a_A 251 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 330 (635)
T ss_dssp CEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCC
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhh
Confidence 00000111 2234
Q ss_pred eEEEecCCcccccCchh-------------------hcCCCCccEEEccCCcCC--CCcccccccccccceeccccCcch
Q 048417 233 VVLILRSNKFYNLLPKE-------------------LCDLAFLQIVDLADNNLS--GEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 233 ~~L~l~~~~~~~~~~~~-------------------~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
+.+++.++.+....... ...+++|+.+++++|.+. +..+.......+++.+++..+...
T Consensus 331 ~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~ 410 (635)
T 4g8a_A 331 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410 (635)
T ss_dssp SEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred hhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence 44444444332221110 112233333333333332 111222233333333333333221
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCC-CCCc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTG-RIPE 370 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~ 370 (453)
........ . ..+..................+..+++++.++++.|.+....+..+..++.++.|++++|.+.+ ..|.
T Consensus 411 ~~~~~~~~-l-~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~ 488 (635)
T 4g8a_A 411 TMSSNFLG-L-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488 (635)
T ss_dssp EECSCCTT-C-TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccccccc-c-ccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch
Confidence 11110000 0 0000000000000111223445678889999999999987788888899999999999997543 4678
Q ss_pred cccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCCC
Q 048417 371 SVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSG 442 (453)
Q Consensus 371 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~ 442 (453)
.+..+++|++|++++|++.+..|..|..+++|++|+|++|++++..+.. ..+++|+.+++++|.+.+.+...
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 8999999999999999999888999999999999999999999876654 78999999999999998886654
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=272.56 Aligned_cols=316 Identities=22% Similarity=0.180 Sum_probs=170.5
Q ss_pred cEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCcEEEccC
Q 048417 16 ATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLEVLSLGS 94 (453)
Q Consensus 16 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~~L~l~~ 94 (453)
+.++.++..++. +|..+ .+++++|++++|.+++..+..+ ..+++|++|++++|.++.. +..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 455666665533 33333 2466777777777744444443 6667777777777766653 44566666666666666
Q ss_pred Cccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccC
Q 048417 95 NSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 95 ~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
|.+....... +++|++|++++|.+...... .+..+++|++|++++|.++...+..|..+++|++|++++|.+.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDY----MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChh----HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 6655433221 23333344433333321111 1223445555555555444333444444455555555555444
Q ss_pred CCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhh
Q 048417 172 GNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250 (453)
Q Consensus 172 ~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 250 (453)
...+..+..+++|+.|++++|.+.... ..+..+++|+ .|++++|...+..+...
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~-------------------------~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK-------------------------VLEISHWPYLDTMTPNC 220 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC-------------------------EEEEECCTTCCEECTTT
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc-------------------------eeeCCCCccccccCccc
Confidence 333333444444444444444444333 2333333444 44444433333333333
Q ss_pred cCCCCccEEEccCCcCCCCcc-cccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCc
Q 048417 251 CDLAFLQIVDLADNNLSGEVP-RCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNL 329 (453)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (453)
....+|++|++++|.+. .+| ..+ ..+++
T Consensus 221 ~~~~~L~~L~l~~n~l~-~~~~~~~--------------------------------------------------~~l~~ 249 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLT-AVPYLAV--------------------------------------------------RHLVY 249 (477)
T ss_dssp TTTCCCSEEEEESSCCC-SCCHHHH--------------------------------------------------TTCTT
T ss_pred ccCccccEEECcCCccc-ccCHHHh--------------------------------------------------cCccc
Confidence 33335555555555554 222 111 23455
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 67777777777655566677777777777777777766667777777777777777777765556677777777777777
Q ss_pred Cccccc
Q 048417 410 NNLTGK 415 (453)
Q Consensus 410 n~l~~~ 415 (453)
|++...
T Consensus 330 N~l~c~ 335 (477)
T 2id5_A 330 NPLACD 335 (477)
T ss_dssp SCEECS
T ss_pred CCccCc
Confidence 777643
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.1e-33 Score=271.02 Aligned_cols=376 Identities=19% Similarity=0.230 Sum_probs=249.7
Q ss_pred cccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcc-------------cEEEcCCCcccccchhhHhhcCCCeEEEEc
Q 048417 3 LKVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHL-------------NYLDLSYSGIIGTIPNIFWSSASQIYVLDL 69 (453)
Q Consensus 3 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L-------------~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 69 (453)
|.+|+.+.++++|++|++++|.+.+..|..++++++| ++|+++++.+ +.+|.. .++|++|++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-~~lp~~----~~~L~~L~l 98 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-SSLPEL----PPHLESLVA 98 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-SCCCSC----CTTCSEEEC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-ccCCCC----cCCCCEEEc
Confidence 6799999999999999999999988889999988875 9999999998 445542 378999999
Q ss_pred cCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCC
Q 048417 70 SFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE 149 (453)
Q Consensus 70 s~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 149 (453)
++|.+++.+.. ..+|++|++++|.+.+.. ...++|++|++++|.+.+. + .+..+++|++|++++|++++
T Consensus 99 ~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~-~~~~~L~~L~L~~n~l~~l-p-----~~~~l~~L~~L~l~~N~l~~- 167 (454)
T 1jl5_A 99 SCNSLTELPEL---PQSLKSLLVDNNNLKALS-DLPPLLEYLGVSNNQLEKL-P-----ELQNSSFLKIIDVDNNSLKK- 167 (454)
T ss_dssp CSSCCSSCCCC---CTTCCEEECCSSCCSCCC-SCCTTCCEEECCSSCCSSC-C-----CCTTCTTCCEEECCSSCCSC-
T ss_pred cCCcCCccccc---cCCCcEEECCCCccCccc-CCCCCCCEEECcCCCCCCC-c-----ccCCCCCCCEEECCCCcCcc-
Confidence 99999875532 478999999999888633 3347899999999988752 2 25679999999999999884
Q ss_pred CchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhcc
Q 048417 150 LPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERF 229 (453)
Q Consensus 150 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 229 (453)
+|.. ..+|++|++++|.+.+ .| .+..+++|+.|++++|.+++++.. .++|+.|++++|.+. .++. +..+
T Consensus 168 lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp~--~~~l 236 (454)
T 1jl5_A 168 LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELPE--LQNL 236 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-cccc--cCCC
Confidence 5543 3589999999999885 55 588899999999999988865533 258999999999886 4553 3578
Q ss_pred CcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhh
Q 048417 230 SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLL 309 (453)
Q Consensus 230 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 309 (453)
++|++|++++|.+.+. +. .+++|++|++++|.+. .+|.. .++|+.++++++....+... +..+...
T Consensus 237 ~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~-~l~~~---~~~L~~L~ls~N~l~~l~~~-----~~~L~~L- 302 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLT-DLPEL---PQSLTFLDVSENIFSGLSEL-----PPNLYYL- 302 (454)
T ss_dssp TTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSEESCC-----CTTCCEE-
T ss_pred CCCCEEECCCCcCCcc-cc---cccccCEEECCCCccc-ccCcc---cCcCCEEECcCCccCcccCc-----CCcCCEE-
Confidence 8899999999988653 32 2478889999998887 45543 36788888888775543211 0000000
Q ss_pred hhHHHHhcCCcchhhhhc-CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcC
Q 048417 310 EDAFVVMKGREAKYERTL-NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQL 388 (453)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 388 (453)
.+.......+... ++|++|++++|++++ +|.. +++|+.|++++|.++ .+|. .+++|++|++++|++
T Consensus 303 -----~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 303 -----NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp -----ECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred -----ECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCC
Confidence 0001111111223 589999999999985 5543 589999999999998 6666 478999999999999
Q ss_pred CC--CCCccccCC-------------CCCCEEEccCCcccccCCCCcccceeecccCCCCCc
Q 048417 389 SG--EIPQSMSSL-------------KFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDL 435 (453)
Q Consensus 389 ~~--~~~~~l~~l-------------~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l 435 (453)
.+ .+|..+..+ ++|++|++++|++++. +.+ .+++..+++.+|.+
T Consensus 370 ~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~-~~i--P~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF-PDI--PESVEDLRMNSERV 428 (454)
T ss_dssp SSCCCCCTTCCEEECCC---------------------------------------------
T ss_pred CcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc-ccc--hhhHhheeCcCccc
Confidence 97 678888777 8999999999999962 322 24567777777764
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=268.42 Aligned_cols=314 Identities=21% Similarity=0.188 Sum_probs=212.3
Q ss_pred EEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEec
Q 048417 65 YVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYL 141 (453)
Q Consensus 65 ~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l 141 (453)
+.++.++..++..+..+ ..+++.|++++|.+....+.. +++|++|++++|.+....+. .+.++++|++|++
T Consensus 14 ~~v~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG----AFNNLFNLRTLGL 87 (477)
T ss_dssp TEEECCSCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh----hhhCCccCCEEEC
Confidence 45666666666665544 246777777777776544322 44666666666665543222 2334666666666
Q ss_pred cCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCccccc
Q 048417 142 SGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVEN 220 (453)
Q Consensus 142 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 220 (453)
++|.++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|.+.... ..+..+++|+.|++++|.+.+
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 166 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS- 166 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-
Confidence 666666433344556666666666666666555555666666666666666665544 355556666666666665543
Q ss_pred CchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhc
Q 048417 221 IPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYAS 300 (453)
Q Consensus 221 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~ 300 (453)
.+...+..+++|+.|++++|.+....+..+..+++|++|++++|...+.++...
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------------------- 220 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-------------------------- 220 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--------------------------
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--------------------------
Confidence 333333455666666666666555555555556666666666555443333211
Q ss_pred cchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCE
Q 048417 301 RAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLES 380 (453)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 380 (453)
....+|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++
T Consensus 221 ------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 221 ------------------------LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp ------------------------TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred ------------------------ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 11236899999999998555567889999999999999999777788999999999
Q ss_pred EEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCc
Q 048417 381 IDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDL 435 (453)
Q Consensus 381 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l 435 (453)
|++++|++.+..+..+..+++|++|++++|++++..+.. ..+++|+.+++++|++
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 999999999888999999999999999999999765544 7889999999999974
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-31 Score=250.72 Aligned_cols=307 Identities=20% Similarity=0.305 Sum_probs=164.2
Q ss_pred ccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEE
Q 048417 33 LYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELD 112 (453)
Q Consensus 33 l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 112 (453)
+.++++|++|+++++.+ ..++. +..+++|++|++++|.++..+. +..+++|++|++++|.+....
T Consensus 40 ~~~l~~L~~L~l~~~~i-~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~----------- 104 (347)
T 4fmz_A 40 QEELESITKLVVAGEKV-ASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS----------- 104 (347)
T ss_dssp HHHHTTCSEEECCSSCC-CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----------
T ss_pred chhcccccEEEEeCCcc-ccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-----------
Confidence 34455555555555555 22332 2445555555555555554333 455555555555555444211
Q ss_pred CcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCC
Q 048417 113 FSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKN 192 (453)
Q Consensus 113 l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 192 (453)
.+..+++|++|++++|.+++ .+. +..+++|++|++++|...... ..+..+++|++|++++|
T Consensus 105 ----------------~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 105 ----------------ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES 165 (347)
T ss_dssp ----------------GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSS
T ss_pred ----------------HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCC
Confidence 12234455555555554442 222 444555555555555333222 22444555555555555
Q ss_pred ccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccc
Q 048417 193 NLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPR 272 (453)
Q Consensus 193 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 272 (453)
.+..... +..+++|+.|++++|.+.+. +. +..+++|+.+++++|.+....+ +..+++|++|++++|.+.+ .+.
T Consensus 166 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~ 238 (347)
T 4fmz_A 166 KVKDVTP-IANLTDLYSLSLNYNQIEDI-SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP 238 (347)
T ss_dssp CCCCCGG-GGGCTTCSEEECTTSCCCCC-GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG
T ss_pred CcCCchh-hccCCCCCEEEccCCccccc-cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc
Confidence 5443332 44555555555555555332 21 2345566666666665544332 5566677777777776652 221
Q ss_pred ccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCC
Q 048417 273 CIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLK 352 (453)
Q Consensus 273 ~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 352 (453)
+ ..+++|++|++++|.+++. ..+..++
T Consensus 239 -~--------------------------------------------------~~l~~L~~L~l~~n~l~~~--~~~~~l~ 265 (347)
T 4fmz_A 239 -L--------------------------------------------------ANLSQLTWLEIGTNQISDI--NAVKDLT 265 (347)
T ss_dssp -G--------------------------------------------------TTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred -h--------------------------------------------------hcCCCCCEEECCCCccCCC--hhHhcCC
Confidence 2 2244456666666666532 3455666
Q ss_pred CCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCC
Q 048417 353 VLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSG 432 (453)
Q Consensus 353 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~ 432 (453)
+|+.|++++|.+.+ + +.+..+++|++|++++|++.+..++.+..+++|++|++++|++++..| ...+++|+.+++++
T Consensus 266 ~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 266 KLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred CcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhh
Confidence 77777777776663 2 346666777777777777766666666677777777777777765444 56667777777777
Q ss_pred CCcc
Q 048417 433 NDLC 436 (453)
Q Consensus 433 n~l~ 436 (453)
|+++
T Consensus 343 N~i~ 346 (347)
T 4fmz_A 343 QVIK 346 (347)
T ss_dssp C---
T ss_pred hccc
Confidence 7543
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.9e-32 Score=256.75 Aligned_cols=326 Identities=20% Similarity=0.192 Sum_probs=223.0
Q ss_pred CCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-CccCCCCCcEEEccCCccccccccc---cccCcE
Q 048417 35 SQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSIALPLI---SSYLIE 110 (453)
Q Consensus 35 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~ 110 (453)
.+++++.++++++.+ +.+|..++..+++|++|++++|.++..++ .+..+++|++|++++|.+....+.. +++|++
T Consensus 43 ~l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 457888899988888 66777766888899999999888877544 6778888888888888877655433 456777
Q ss_pred EECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEcc
Q 048417 111 LDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190 (453)
Q Consensus 111 L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 190 (453)
|++++|.+....... +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+..+++|+.|+++
T Consensus 122 L~L~~n~l~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 122 LVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVS 194 (390)
T ss_dssp EECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECC
T ss_pred EECCCCccCcCCHHH----hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecc
Confidence 777777666322221 23577777777777777755566677777777777777777643 24556777777777
Q ss_pred CCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCc
Q 048417 191 KNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEV 270 (453)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 270 (453)
+|.+.... ..++++.|++++|.+... +.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..
T Consensus 195 ~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 195 YNLLSTLA----IPIAVEELDASHNSINVV-RGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp SSCCSEEE----CCSSCSEEECCSSCCCEE-ECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred cccccccC----CCCcceEEECCCCeeeec-ccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence 77665432 334677777777766442 221 235677777777766553 35666677777777777666443
Q ss_pred ccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccC
Q 048417 271 PRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN 350 (453)
Q Consensus 271 ~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 350 (453)
|..+. .+++|++|++++|.++ ..+..+..
T Consensus 265 ~~~~~--------------------------------------------------~l~~L~~L~L~~n~l~-~~~~~~~~ 293 (390)
T 3o6n_A 265 YHPFV--------------------------------------------------KMQRLERLYISNNRLV-ALNLYGQP 293 (390)
T ss_dssp SGGGT--------------------------------------------------TCSSCCEEECCSSCCC-EEECSSSC
T ss_pred hhHcc--------------------------------------------------ccccCCEEECCCCcCc-ccCcccCC
Confidence 43332 3556788888888887 34555667
Q ss_pred CCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccC
Q 048417 351 LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSF 430 (453)
Q Consensus 351 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l 430 (453)
+++|+.|++++|.+. .+|..+..+++|++|++++|++... + +..+++|++|++++|++.+.- ....+..+....+
T Consensus 294 l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~-~~~~~~~~~~~~~ 368 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS-LRALFRNVARPAV 368 (390)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH-HHHHTTTCCTTTB
T ss_pred CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh-HHHHHHHHHhhcc
Confidence 888999999988887 6677778888899999998888743 3 667888889999988887532 1133444444444
Q ss_pred CCCC
Q 048417 431 SGND 434 (453)
Q Consensus 431 ~~n~ 434 (453)
.+++
T Consensus 369 ~~~~ 372 (390)
T 3o6n_A 369 DDAD 372 (390)
T ss_dssp CCCC
T ss_pred cccC
Confidence 4443
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-31 Score=258.35 Aligned_cols=357 Identities=16% Similarity=0.113 Sum_probs=248.7
Q ss_pred ccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCcccc
Q 048417 20 LRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSI 99 (453)
Q Consensus 20 L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 99 (453)
...+......+..++++++|++|+++++.+++ +| .+ ..+++|++|++++|.+++.+ +..+++|++|++++|.+.+
T Consensus 25 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l-~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 25 AAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GI-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp HHHTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TG-GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred HHhcCcCcccccChhHcCCCCEEEccCCCccc-Ch-hh-cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce
Confidence 33444445555678899999999999999955 56 44 88999999999999999863 8889999999999999988
Q ss_pred ccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCcccc
Q 048417 100 ALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLG 179 (453)
Q Consensus 100 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 179 (453)
.....+++|++|++++|.+.... ++.+++|++|++++|++++ ++ +..+++|++|++++|...+.. .+.
T Consensus 100 ~~~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~ 167 (457)
T 3bz5_A 100 LDVTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVT 167 (457)
T ss_dssp CCCTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCT
T ss_pred eecCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccc
Confidence 76566889999999999988631 4579999999999999985 33 788999999999999654444 477
Q ss_pred ccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEE
Q 048417 180 SLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIV 259 (453)
Q Consensus 180 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 259 (453)
.+++|+.|++++|.+++++ +..+++|+.|++++|.+.+. + +..+++|+.|++++|.+.+ +| +..+++|++|
T Consensus 168 ~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp TCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred cCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 8999999999999998865 78889999999999998764 2 3468999999999999987 44 7889999999
Q ss_pred EccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCc
Q 048417 260 DLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNN 339 (453)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 339 (453)
++++|.+.+.. ...+++|+.+++..+....+.... + ......+...+++|+.|++++|.
T Consensus 239 ~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~---n---------------~~~~~~~~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 239 DCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTH---N---------------TQLIYFQAEGCRKIKELDVTHNT 297 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTT---C---------------TTCCEEECTTCTTCCCCCCTTCT
T ss_pred EeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCC---C---------------ccCCcccccccccCCEEECCCCc
Confidence 99999998543 445666666655543311110000 0 00000011234555555555554
Q ss_pred CCCcCCc--------cccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCc
Q 048417 340 FSGKIPL--------EVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN 411 (453)
Q Consensus 340 l~~~~~~--------~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 411 (453)
..+.+|. .+..+++|+.|++++|++++ ++ ++.+++|+.|++++|++.+ ++.|..|++++|.
T Consensus 298 ~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~ 366 (457)
T 3bz5_A 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNN 366 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTS
T ss_pred ccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCc
Confidence 3222221 23344455555555555553 21 4455555555555555542 1233344444444
Q ss_pred ccccCCCCcccceeecccCCCCCccCC
Q 048417 412 LTGKIPSSTQLQSFDASSFSGNDLCRA 438 (453)
Q Consensus 412 l~~~~~~~~~l~~L~~l~l~~n~l~~~ 438 (453)
+.+. +.+..|..+++++|.++|.
T Consensus 367 l~g~----~~~~~l~~l~l~~N~l~g~ 389 (457)
T 3bz5_A 367 FEAE----GQTITMPKETLTNNSLTIA 389 (457)
T ss_dssp EEEE----EEEEECCCBCCBTTBEEEE
T ss_pred EEec----ceeeecCccccccCcEEEE
Confidence 4443 3456778888888887654
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.5e-31 Score=247.63 Aligned_cols=297 Identities=22% Similarity=0.274 Sum_probs=235.7
Q ss_pred hcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccE
Q 048417 59 SSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQI 138 (453)
Q Consensus 59 ~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~ 138 (453)
..+++|++|+++++.+...+ .+..+++|++|++++|.+. .... +..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~---------------------~~~~------~~~l~~L~~ 92 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQIT---------------------DISP------LSNLVKLTN 92 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC---------------------CCGG------GTTCTTCCE
T ss_pred hhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccc---------------------cchh------hhcCCcCCE
Confidence 34567777777777666543 3555666666666665544 2111 346899999
Q ss_pred EeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCccc
Q 048417 139 LYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELV 218 (453)
Q Consensus 139 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 218 (453)
|++++|.++. ++ .+..+++|++|++++|.+.+. +. +..+++|+.|++++|........+..+++|+.|++++|.+.
T Consensus 93 L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 93 LYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp EECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred EEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC
Confidence 9999999984 44 589999999999999999854 33 88999999999999976666667889999999999999986
Q ss_pred ccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhh
Q 048417 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLY 298 (453)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~ 298 (453)
+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +
T Consensus 169 ~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~------------------------ 217 (347)
T 4fmz_A 169 DVTP---IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--V------------------------ 217 (347)
T ss_dssp CCGG---GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G------------------------
T ss_pred Cchh---hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--h------------------------
Confidence 5433 4578999999999999876543 8889999999999998873222 2
Q ss_pred hccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCC
Q 048417 299 ASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSL 378 (453)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 378 (453)
..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ + +.+..+++|
T Consensus 218 --------------------------~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L 267 (347)
T 4fmz_A 218 --------------------------ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKL 267 (347)
T ss_dssp --------------------------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred --------------------------hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCc
Confidence 335678999999999985443 8889999999999999984 3 568899999
Q ss_pred CEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCCCCCCCCccC
Q 048417 379 ESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCSEHVSI 450 (453)
Q Consensus 379 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~~~~~~ 450 (453)
++|++++|.+.+. ..+..+++|++|++++|++++..+.. ..+++|+.+++++|++++.+.-..+++++++
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 338 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA 338 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEE
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhcccee
Confidence 9999999999854 56889999999999999999766553 7799999999999999888766667766654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-31 Score=255.84 Aligned_cols=308 Identities=19% Similarity=0.209 Sum_probs=255.1
Q ss_pred cCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-CccCCCCCc
Q 048417 10 IPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLE 88 (453)
Q Consensus 10 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-~l~~~~~L~ 88 (453)
..+++++.|+++++.++...+..|.++++|++|++++|.+.+..+..+ ..+++|++|++++|.++..++ .+.++++|+
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhc-cCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 346899999999999977666668999999999999999955444454 899999999999999988654 478899999
Q ss_pred EEEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEc
Q 048417 89 VLSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDL 165 (453)
Q Consensus 89 ~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 165 (453)
+|++++|.+....... +++|++|++++|.+....+. .+..+++|++|++++|.+++. + +..+++|+++++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l 193 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD----TFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANV 193 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT----TTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEEC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh----hccCCCCCCEEECCCCcCCcc-c--cccccccceeec
Confidence 9999999998766543 67999999999998864443 345699999999999999843 3 677899999999
Q ss_pred ccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 166 SNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 166 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
++|.+.. +...++|+.|++++|.+...+.. ..++|+.|++++|.+.+. + .+..+++|++|++++|.+.+.
T Consensus 194 ~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 194 SYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-A--WLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCEE
T ss_pred ccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc-H--HHcCCCCccEEECCCCcCCCc
Confidence 9998763 34456899999999999877543 347999999999998763 2 345789999999999999988
Q ss_pred CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhh
Q 048417 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325 (453)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (453)
.+..+..+++|++|++++|.+. .++..+ .
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~--------------------------------------------------~ 292 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLV-ALNLYG--------------------------------------------------Q 292 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCC-EEECSS--------------------------------------------------S
T ss_pred ChhHccccccCCEEECCCCcCc-ccCccc--------------------------------------------------C
Confidence 8889999999999999999987 333322 2
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCC
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 390 (453)
.+++|++|++++|.++ .+|..+..+++|+.|++++|.+. .++ +..+++|+.|++++|++..
T Consensus 293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccc
Confidence 3566899999999998 56767888999999999999998 443 6789999999999999874
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.6e-32 Score=249.53 Aligned_cols=258 Identities=29% Similarity=0.518 Sum_probs=220.5
Q ss_pred CcccEEeccCCCCCC--CCchhhhcCCcccEEEccc-CccCCCCCccccccccccEEEccCCcccc-ccccccccCCCCE
Q 048417 134 NKWQILYLSGNFLQG--ELPDCWMNYQNLMILDLSN-NKFTGNLPISLGSLISLQSLHLRKNNLCG-TIHSLENCTALMT 209 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~ 209 (453)
.+++.|+++++.+++ .+|..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+ .+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578888888888887 6788888888899999885 78877888888888889999988888874 4467788888888
Q ss_pred EeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCC-CccEEEccCCcCCCCcccccccccccceeccccC
Q 048417 210 LDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLA-FLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288 (453)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~ 288 (453)
|++++|.+.+..+..+ ..+++|++|++++|.+.+..|..+..++ .|++|++++|.+.+.+|..+..+
T Consensus 130 L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l----------- 197 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL----------- 197 (313)
T ss_dssp EECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----------
T ss_pred EeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----------
Confidence 8888888876666654 4688888888888888877888888887 89999999998876666655432
Q ss_pred cchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC
Q 048417 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI 368 (453)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 368 (453)
. |++|++++|.+++..+..+..+++|+.|++++|.+.+.+
T Consensus 198 ---------------------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 198 ---------------------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp ---------------------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred ---------------------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 2 788999999998888889999999999999999998555
Q ss_pred CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC-ccCCCCCCCCC
Q 048417 369 PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRAPLSGNCS 445 (453)
Q Consensus 369 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~~~~~~~c~ 445 (453)
+. +..+++|++|++++|++.+.+|..+..+++|++|++++|++++.+|....+++|+.+++++|+ +||.|+. .|.
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CCC
Confidence 54 788999999999999999899999999999999999999999999999999999999999999 9999887 473
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.3e-31 Score=265.14 Aligned_cols=330 Identities=20% Similarity=0.199 Sum_probs=235.5
Q ss_pred CCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCc-CccCCCCCcEEEccCCccccccccc---cccCcE
Q 048417 35 SQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-NLTNAAQLEVLSLGSNSFSIALPLI---SSYLIE 110 (453)
Q Consensus 35 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~ 110 (453)
.+++++.++++++.+ +.+|..++..+++|++|++++|.++..++ .+..+++|++|++++|.+....+.. +++|++
T Consensus 49 ~l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 357889999999988 66777777889999999999999887554 7888889999999999888765543 567777
Q ss_pred EECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEcc
Q 048417 111 LDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLR 190 (453)
Q Consensus 111 L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 190 (453)
|++++|.+....... +..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.. +..+++|+.|+++
T Consensus 128 L~L~~n~l~~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 128 LVLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp EECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC
T ss_pred EEeeCCCCCCCCHHH----hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc
Confidence 777777776433222 235778888888888777666666777788888888888777432 4556777788887
Q ss_pred CCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCc
Q 048417 191 KNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEV 270 (453)
Q Consensus 191 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 270 (453)
+|.+.+. ...++|+.|++++|.+... +.. ..++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 201 ~n~l~~l----~~~~~L~~L~ls~n~l~~~-~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 201 YNLLSTL----AIPIAVEELDASHNSINVV-RGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp SSCCSEE----ECCTTCSEEECCSSCCCEE-ECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred cCccccc----cCCchhheeeccCCccccc-ccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence 7766543 2345677777777776442 211 235677777777776652 45666777777777777776544
Q ss_pred ccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccC
Q 048417 271 PRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN 350 (453)
Q Consensus 271 ~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 350 (453)
|..+. .+++|+.|++++|.+++ +|..+..
T Consensus 271 ~~~~~--------------------------------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~ 299 (597)
T 3oja_B 271 YHPFV--------------------------------------------------KMQRLERLYISNNRLVA-LNLYGQP 299 (597)
T ss_dssp SGGGT--------------------------------------------------TCSSCCEEECTTSCCCE-EECSSSC
T ss_pred HHHhc--------------------------------------------------CccCCCEEECCCCCCCC-CCccccc
Confidence 44443 35567889999998874 5666677
Q ss_pred CCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccC
Q 048417 351 LKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSF 430 (453)
Q Consensus 351 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l 430 (453)
+++|+.|++++|.+. .+|..+..+++|+.|++++|.+... + +..+++|+.|++++|++.+... ...+..+....+
T Consensus 300 l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~ 374 (597)
T 3oja_B 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAV 374 (597)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTB
T ss_pred CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhcc
Confidence 889999999999888 7777788889999999999988844 3 6678899999999999885421 123444444445
Q ss_pred CCCC-ccCC
Q 048417 431 SGND-LCRA 438 (453)
Q Consensus 431 ~~n~-l~~~ 438 (453)
.+++ .|+.
T Consensus 375 ~~~~~~C~~ 383 (597)
T 3oja_B 375 DDADQHCKI 383 (597)
T ss_dssp CCCCCCCCT
T ss_pred ccccccCCc
Confidence 5554 5554
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.3e-30 Score=262.35 Aligned_cols=307 Identities=19% Similarity=0.211 Sum_probs=256.3
Q ss_pred CCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcC-ccCCCCCcE
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPN-LTNAAQLEV 89 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~-l~~~~~L~~ 89 (453)
.+.+++.++++++.++...+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.++..++. +.++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 46789999999999977766778999999999999999966555555 8999999999999999986654 688999999
Q ss_pred EEccCCccccccccc---cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 90 LSLGSNSFSIALPLI---SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 90 L~l~~~~~~~~~~~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
|++++|.+...+... +++|++|++++|.+....+.. +..+++|++|++++|.+++. + +..+++|++|+++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~ 200 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVS 200 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh----hhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcc
Confidence 999999999766543 679999999999998654443 44699999999999999843 3 5678999999999
Q ss_pred cCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccC
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 246 (453)
+|.+.+ +...+.|+.|++++|.+......+ .++|+.|++++|.+.+. . .+..+++|+.|++++|.+.+..
T Consensus 201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~-~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 201 YNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp SSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEE
T ss_pred cCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--h-hhccCCCCCEEECCCCccCCCC
Confidence 998763 345578999999999998766443 36899999999998763 2 2357899999999999999988
Q ss_pred chhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhh
Q 048417 247 PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERT 326 (453)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (453)
|..+..+++|+.|++++|.+.+ +|..+. .
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~--------------------------------------------------~ 299 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNRLVA-LNLYGQ--------------------------------------------------P 299 (597)
T ss_dssp SGGGTTCSSCCEEECTTSCCCE-EECSSS--------------------------------------------------C
T ss_pred HHHhcCccCCCEEECCCCCCCC-CCcccc--------------------------------------------------c
Confidence 9999999999999999999873 343322 2
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCC
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 390 (453)
+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|++..
T Consensus 300 l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 300 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCC
Confidence 566899999999998 677778889999999999999984 33 6778999999999999864
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.1e-32 Score=269.51 Aligned_cols=381 Identities=15% Similarity=0.124 Sum_probs=202.6
Q ss_pred CCcccEEEccCCcCCCCCCc-cccCCCcccEEEcCCCccccc----chhhHhhcCCCeEEEEccCCcccCC-CcCc-cCC
Q 048417 12 PFQLATLGLRHCHLGSRFPS-WLYSQKHLNYLDLSYSGIIGT----IPNIFWSSASQIYVLDLSFNQIHGQ-IPNL-TNA 84 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l-~~~ 84 (453)
+++|++|+++++.++..... .+..+++|++|++++|.+.+. ++..+ ..+++|++|++++|.+... ...+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 35677888887777543322 266777888888888877432 23333 5667788888887776541 1111 112
Q ss_pred C----CCcEEEccCCcccccc----c---cccccCcEEECcCCCCCCchhhhhhhhhc-ccCcccEEeccCCCCCCCC--
Q 048417 85 A----QLEVLSLGSNSFSIAL----P---LISSYLIELDFSNNSISGSIFHFICYRAN-ELNKWQILYLSGNFLQGEL-- 150 (453)
Q Consensus 85 ~----~L~~L~l~~~~~~~~~----~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-- 150 (453)
. +|++|++++|.+.... + ..+++|++|++++|.+.......+...+. ..++|++|++++|.++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 2 5777777777665321 1 12445666666666655444444433321 2345666666666555322
Q ss_pred --chhhhcCCcccEEEcccCccCCCCCcccc-----ccccccEEEccCCccccc-----cccccccCCCCEEeCCCCccc
Q 048417 151 --PDCWMNYQNLMILDLSNNKFTGNLPISLG-----SLISLQSLHLRKNNLCGT-----IHSLENCTALMTLDVGENELV 218 (453)
Q Consensus 151 --~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~ 218 (453)
+..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.++.. ...+..+++|++|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 33344455666666666655432222221 133555555555555431 233344455555555555443
Q ss_pred ccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCC----cccccccccccceeccccCcchhhh
Q 048417 219 ENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGE----VPRCIHNLRAMVTMNSHAGKAIQYQ 294 (453)
Q Consensus 219 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~i~~~~~~~~~ 294 (453)
+.....+. +..+..+++|++|++++|.++.. ++..+..+++|+.|+++++.+....
T Consensus 241 ~~~~~~l~--------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 241 DVGMAELC--------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHHHH--------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred hHHHHHHH--------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 32111111 11111244455555555544422 3334444455555555544322111
Q ss_pred hhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCc----CCccccCCCCCcEEEcCCccCCCCCCc
Q 048417 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK----IPLEVTNLKVLQSVNLSNNFFTGRIPE 370 (453)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~ 370 (453)
..... .......++|++|++++|.+++. .+..+..+++|+.|++++|.+.+..+.
T Consensus 301 ~~~l~---------------------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 301 ARLLC---------------------ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHHH---------------------HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HHHHH---------------------HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 11000 00001235688888888887654 344556678888888888887754433
Q ss_pred cccC-----CCCCCEEEcCCCcCCC----CCCccccCCCCCCEEEccCCccccc--------CCC-CcccceeecccCCC
Q 048417 371 SVGT-----MRSLESIDFSLNQLSG----EIPQSMSSLKFLNHLNLSNNNLTGK--------IPS-STQLQSFDASSFSG 432 (453)
Q Consensus 371 ~l~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~--------~~~-~~~l~~L~~l~l~~ 432 (453)
.+.. .++|++|++++|.+++ .++..+..+++|++|++++|++++. ++. ...+..|+..+++.
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 3322 6688888888888875 5666777788888888888887743 222 23455555555544
Q ss_pred CC
Q 048417 433 ND 434 (453)
Q Consensus 433 n~ 434 (453)
++
T Consensus 440 ~~ 441 (461)
T 1z7x_W 440 SE 441 (461)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.2e-32 Score=269.39 Aligned_cols=360 Identities=18% Similarity=0.087 Sum_probs=264.5
Q ss_pred CcCCCcccEEEccCCcCCC----CCCccccCCCcccEEEcCCCcccccchhhHhhcCC----CeEEEEccCCcccC----
Q 048417 9 WIPPFQLATLGLRHCHLGS----RFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSAS----QIYVLDLSFNQIHG---- 76 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~ls~~~~~~---- 76 (453)
+..+++|++|++++|.++. .++.++..+++|++|++++|.+.+..+..++..++ +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 5568899999999999864 34567888999999999999997766666666676 79999999999884
Q ss_pred -CCcCccCCCCCcEEEccCCcccccccc--------ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCC
Q 048417 77 -QIPNLTNAAQLEVLSLGSNSFSIALPL--------ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ 147 (453)
Q Consensus 77 -~~~~l~~~~~L~~L~l~~~~~~~~~~~--------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 147 (453)
.+..+..+++|++|++++|.+...... ..++|++|++++|.++......++..+..+++|++|++++|.++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 355678899999999999998753322 13479999999999998887788888888999999999999987
Q ss_pred CCCchhhh-----cCCcccEEEcccCccCCC----CCccccccccccEEEccCCcccccc-----c-cccccCCCCEEeC
Q 048417 148 GELPDCWM-----NYQNLMILDLSNNKFTGN----LPISLGSLISLQSLHLRKNNLCGTI-----H-SLENCTALMTLDV 212 (453)
Q Consensus 148 ~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~-----~-~~~~~~~L~~L~l 212 (453)
...+..+. ..++|++|++++|.+.+. ++..+..+++|+.|++++|.+.... + ....+++|++|++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 44333333 256999999999998853 3556677899999999999886532 2 2235789999999
Q ss_pred CCCcccccCch---HHHhccCcceEEEecCCcccccCchhhc-----CCCCccEEEccCCcCCCCcccccccccccceec
Q 048417 213 GENELVENIPT---WIRERFSRIVVLILRSNKFYNLLPKELC-----DLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN 284 (453)
Q Consensus 213 ~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 284 (453)
++|.+...... .....+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.....+
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l---------- 333 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF---------- 333 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH----------
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH----------
Confidence 99988654211 1223578899999999987654433333 23688999999888764321111
Q ss_pred cccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccC-----CCCCcEEEc
Q 048417 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTN-----LKVLQSVNL 359 (453)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l 359 (453)
...+..+++|++|++++|.+++..+..+.. .++|+.|++
T Consensus 334 ------------------------------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 334 ------------------------------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp ------------------------------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred ------------------------------------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 112234567888888888776543333322 568888888
Q ss_pred CCccCCC----CCCccccCCCCCCEEEcCCCcCCCCCCcc----c-cCCCCCCEEEccCCcccc
Q 048417 360 SNNFFTG----RIPESVGTMRSLESIDFSLNQLSGEIPQS----M-SSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 360 ~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l-~~l~~L~~L~l~~n~l~~ 414 (453)
++|.+++ .++..+..+++|++|++++|++.+..... + ....+|+.|.+.++.+..
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 8888875 56677778888999999988887432111 1 124568888888777653
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.7e-27 Score=222.01 Aligned_cols=288 Identities=18% Similarity=0.170 Sum_probs=144.4
Q ss_pred cccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCcEEEc
Q 048417 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLEVLSL 92 (453)
Q Consensus 14 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~~L~l 92 (453)
+++.++++++.++. +|..+. +++++|++++|.+++..+..+ ..+++|++|++++|.++.. +..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 45556665555532 333222 455556666665533222222 5555566666665555543 334555555555555
Q ss_pred cCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCC
Q 048417 93 GSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTG 172 (453)
Q Consensus 93 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 172 (453)
++|.+.......+ ++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 108 s~n~l~~l~~~~~----------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 108 SKNQLKELPEKMP----------------------------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CSSCCSBCCSSCC----------------------------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCcCCccChhhc----------------------------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 5555443222222 344444444444443333334444444444444444431
Q ss_pred --CCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhh
Q 048417 173 --NLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKEL 250 (453)
Q Consensus 173 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 250 (453)
..+..+..+++|+.|++++|.++.++..+ .++|++|++++|.+.+..+..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---------------------------~~~L~~L~l~~n~l~~~~~~~~ 212 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGL---------------------------PPSLTELHLDGNKITKVDAASL 212 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---------------------------CTTCSEEECTTSCCCEECTGGG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCccc---------------------------cccCCEEECCCCcCCccCHHHh
Confidence 22333444444444444444443322111 1345555555555544445566
Q ss_pred cCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcc
Q 048417 251 CDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLV 330 (453)
Q Consensus 251 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 330 (453)
..+++|++|++++|.+.+..+..+. .+++|
T Consensus 213 ~~l~~L~~L~Ls~n~l~~~~~~~~~--------------------------------------------------~l~~L 242 (330)
T 1xku_A 213 KGLNNLAKLGLSFNSISAVDNGSLA--------------------------------------------------NTPHL 242 (330)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTGG--------------------------------------------------GSTTC
T ss_pred cCCCCCCEEECCCCcCceeChhhcc--------------------------------------------------CCCCC
Confidence 6666777777777766533222222 23445
Q ss_pred cEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccC------CCCCCEEEcCCCcCCC--CCCccccCCCCC
Q 048417 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGT------MRSLESIDFSLNQLSG--EIPQSMSSLKFL 402 (453)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~------l~~L~~L~l~~n~l~~--~~~~~l~~l~~L 402 (453)
++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.. .+.++.|++++|++.. ..|..+..++.+
T Consensus 243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 66666666665 55555666666777777777666443344422 3566677777776642 344566666777
Q ss_pred CEEEccCCc
Q 048417 403 NHLNLSNNN 411 (453)
Q Consensus 403 ~~L~l~~n~ 411 (453)
+.+++++|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 777776663
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.3e-27 Score=222.91 Aligned_cols=287 Identities=17% Similarity=0.209 Sum_probs=151.0
Q ss_pred CCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEc
Q 048417 86 QLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDL 165 (453)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 165 (453)
+++.++++++.+...+....+.+++|++++|.+...... .+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 445555555544433333333444444444444432221 2234566666666666665444555566666666666
Q ss_pred ccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCccccc-CchHHHhccCcceEEEecCCccc
Q 048417 166 SNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVEN-IPTWIRERFSRIVVLILRSNKFY 243 (453)
Q Consensus 166 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 243 (453)
++|.+. .+|..+. ++|+.|++++|.+.... ..+..+++|+.|++++|.+... .....+..+++|++|++++|.+.
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 666555 3333322 45555555555555444 2344555555555555544320 11111233444444444444443
Q ss_pred ccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchh
Q 048417 244 NLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKY 323 (453)
Q Consensus 244 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (453)
.. +..+ .++|++|++++|.+.+..+..+
T Consensus 185 ~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~------------------------------------------------- 212 (330)
T 1xku_A 185 TI-PQGL--PPSLTELHLDGNKITKVDAASL------------------------------------------------- 212 (330)
T ss_dssp SC-CSSC--CTTCSEEECTTSCCCEECTGGG-------------------------------------------------
T ss_pred cC-Cccc--cccCCEEECCCCcCCccCHHHh-------------------------------------------------
Confidence 31 2111 1344445555444442222222
Q ss_pred hhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccC-----
Q 048417 324 ERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSS----- 398 (453)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~----- 398 (453)
..+++|++|++++|.+++..+..+..+++|+.|++++|.+. .+|.++..+++|++|++++|++++..+..|..
T Consensus 213 -~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 213 -KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290 (330)
T ss_dssp -TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred -cCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence 23455677777777776555556777777777777777777 66666777777777777777777555555533
Q ss_pred -CCCCCEEEccCCcccc--cCC-CCcccceeecccCCCC
Q 048417 399 -LKFLNHLNLSNNNLTG--KIP-SSTQLQSFDASSFSGN 433 (453)
Q Consensus 399 -l~~L~~L~l~~n~l~~--~~~-~~~~l~~L~~l~l~~n 433 (453)
.+.|+.|++++|++.. ..| ....+.+++.+++++|
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 3567777777777652 112 2255666777777766
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.2e-30 Score=263.20 Aligned_cols=404 Identities=11% Similarity=-0.022 Sum_probs=239.3
Q ss_pred CcCCCcccEEEccCCcCC---CCCCcc------------ccCCCcccEEEcCCCcccccchhhHhhcCCC-eEEEEccCC
Q 048417 9 WIPPFQLATLGLRHCHLG---SRFPSW------------LYSQKHLNYLDLSYSGIIGTIPNIFWSSASQ-IYVLDLSFN 72 (453)
Q Consensus 9 ~~~~~~L~~L~L~~~~~~---~~~~~~------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~ls~~ 72 (453)
+..+++|++|++++|... +..|.. ...+++|++|+++++.+++..+..+...++. |++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 456888999999886531 111111 1278999999999998866666665343555 999999988
Q ss_pred c-ccC--CCcCccCCCCCcEEEccCCcccccc-------ccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEecc
Q 048417 73 Q-IHG--QIPNLTNAAQLEVLSLGSNSFSIAL-------PLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLS 142 (453)
Q Consensus 73 ~-~~~--~~~~l~~~~~L~~L~l~~~~~~~~~-------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 142 (453)
. ++. .......+++|++|++++|.+.... ...+++|++|+++++.+.+.....+...+..+++|++|+++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 6 221 1122347789999999999876542 22367999999999988755555666666779999999999
Q ss_pred CCCCCCCCchhhhcCCcccEEEcccCccC---CCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccc
Q 048417 143 GNFLQGELPDCWMNYQNLMILDLSNNKFT---GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVE 219 (453)
Q Consensus 143 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 219 (453)
+|.+. ..+..+..+++|++|+++..... ...+..+..+++|+.+++.++.....+..+..+++|++|++++|.+.+
T Consensus 229 ~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 229 DFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp SCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred CccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH
Confidence 99887 46777888999999998864322 122334566777888888776555555666677788888888877654
Q ss_pred cCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccC-----------CcCCCC-cccccccccccceecccc
Q 048417 220 NIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD-----------NNLSGE-VPRCIHNLRAMVTMNSHA 287 (453)
Q Consensus 220 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~-~~~~~~~~~~L~~l~i~~ 287 (453)
.....+...+++|+.|++.++......+.....+++|++|++++ +.+++. ++.....+++|+.|++..
T Consensus 308 ~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 44334445677888888873322222333345677788888873 334322 122244567777777744
Q ss_pred CcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecC----CCcCCCc-----CCccccCCCCCcEEE
Q 048417 288 GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS----KNNFSGK-----IPLEVTNLKVLQSVN 358 (453)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~----~~~l~~~-----~~~~~~~~~~L~~L~ 358 (453)
+........... ..+++|+.|+++ .+.+++. ++..+..+++|+.|+
T Consensus 388 ~~l~~~~~~~l~-------------------------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 388 SDITNESLESIG-------------------------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp SCCCHHHHHHHH-------------------------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCccHHHHHHHH-------------------------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 433221111000 124455555553 3334321 112233455555555
Q ss_pred cCCcc--CCCCCCccc-cCCCCCCEEEcCCCcCCC-CCCccccCCCCCCEEEccCCccccc-CCCC-cccceeecccCCC
Q 048417 359 LSNNF--FTGRIPESV-GTMRSLESIDFSLNQLSG-EIPQSMSSLKFLNHLNLSNNNLTGK-IPSS-TQLQSFDASSFSG 432 (453)
Q Consensus 359 l~~n~--~~~~~~~~l-~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~-~~l~~L~~l~l~~ 432 (453)
+++|. +++..+..+ ..+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.. ..+++|+.+++++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 54332 332222222 225555555555555543 1233334555555555555554421 1211 3455555555555
Q ss_pred CCccCC
Q 048417 433 NDLCRA 438 (453)
Q Consensus 433 n~l~~~ 438 (453)
|++++.
T Consensus 523 n~it~~ 528 (592)
T 3ogk_B 523 YRASMT 528 (592)
T ss_dssp CBCCTT
T ss_pred CcCCHH
Confidence 555444
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=7.7e-28 Score=224.54 Aligned_cols=243 Identities=18% Similarity=0.228 Sum_probs=125.4
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEE
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTL 210 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L 210 (453)
.+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+.... ..+..+++|+.|
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 4555666666665555444555555566666666665555 3333322 45555555555555444 234555555555
Q ss_pred eCCCCcccc--cCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccC
Q 048417 211 DVGENELVE--NIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288 (453)
Q Consensus 211 ~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~ 288 (453)
++++|.+.. ..+. .+..+ +|+.|++++|.+.. +|..+. ++|++|++++|.+.+..+..+..
T Consensus 153 ~l~~n~l~~~~~~~~-~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~------------ 215 (332)
T 2ft3_A 153 EMGGNPLENSGFEPG-AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLR------------ 215 (332)
T ss_dssp ECCSCCCBGGGSCTT-SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT------------
T ss_pred ECCCCccccCCCCcc-cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcC------------
Confidence 555555432 1111 11122 44445555544433 222221 45555555555555333333322
Q ss_pred cchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC
Q 048417 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI 368 (453)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 368 (453)
+++|+.|++++|.+++..+.++..+++|+.|++++|.+. .+
T Consensus 216 --------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 216 --------------------------------------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp --------------------------------------CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred --------------------------------------CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 344555666666666555555666666666666666666 55
Q ss_pred CccccCCCCCCEEEcCCCcCCCCCCccccC------CCCCCEEEccCCccc--ccCCC-CcccceeecccCCCC
Q 048417 369 PESVGTMRSLESIDFSLNQLSGEIPQSMSS------LKFLNHLNLSNNNLT--GKIPS-STQLQSFDASSFSGN 433 (453)
Q Consensus 369 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~--~~~~~-~~~l~~L~~l~l~~n 433 (453)
|..+..+++|++|++++|++++..+..+.. .+.|+.|++++|++. +..+. ...+++|+.+++++|
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 656666666666666666666544444443 245666666666655 22222 245666666666655
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-27 Score=222.65 Aligned_cols=286 Identities=22% Similarity=0.244 Sum_probs=198.0
Q ss_pred cccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCC-cCccCCCCCcEEEccCCccccccccccccCcEEECcCC
Q 048417 38 HLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQI-PNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNN 116 (453)
Q Consensus 38 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~ 116 (453)
+++.++++++.+ ..+|..+ .++|++|++++|.++... ..+.++++|++|++++|.+....+
T Consensus 34 ~l~~l~~~~~~l-~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------- 95 (332)
T 2ft3_A 34 HLRVVQCSDLGL-KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-------------- 95 (332)
T ss_dssp ETTEEECCSSCC-SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG--------------
T ss_pred cCCEEECCCCCc-cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH--------------
Confidence 567777777776 4555543 256777777777766543 356666677777766666553322
Q ss_pred CCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccc
Q 048417 117 SISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG 196 (453)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 196 (453)
..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+....+..|..+++|+.|++++|.++.
T Consensus 96 -----------~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 161 (332)
T 2ft3_A 96 -----------KAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161 (332)
T ss_dssp -----------GGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG
T ss_pred -----------hHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc
Confidence 22335677777777777766 4444333 677777777777775555556777777777777777653
Q ss_pred --c-cccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccc
Q 048417 197 --T-IHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRC 273 (453)
Q Consensus 197 --~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 273 (453)
. ...+..+ +|+.|++++|.+.+ ++..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 162 ~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 162 SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred CCCCcccccCC-ccCEEECcCCCCCc-cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 2 2444444 77778888777754 44332 267888888888887777778888999999999999888544444
Q ss_pred cccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCC
Q 048417 274 IHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKV 353 (453)
Q Consensus 274 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 353 (453)
+. .+++|++|++++|.++ .+|..+..+++
T Consensus 237 ~~--------------------------------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 237 LS--------------------------------------------------FLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp GG--------------------------------------------------GCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred hh--------------------------------------------------CCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 43 3455788888888887 67777888999
Q ss_pred CcEEEcCCccCCCCCCccccC------CCCCCEEEcCCCcCC--CCCCccccCCCCCCEEEccCCc
Q 048417 354 LQSVNLSNNFFTGRIPESVGT------MRSLESIDFSLNQLS--GEIPQSMSSLKFLNHLNLSNNN 411 (453)
Q Consensus 354 L~~L~l~~n~~~~~~~~~l~~------l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~ 411 (453)
|+.|++++|.+++..+..+.. .++|+.|++++|++. +..+..+..+++|+.+++++|+
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999998655555543 467899999999887 5677788899999999998875
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.2e-28 Score=225.94 Aligned_cols=251 Identities=26% Similarity=0.397 Sum_probs=208.9
Q ss_pred ccCcEEECcCCCCCC--chhhhhhhhhcccCcccEEeccC-CCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccc
Q 048417 106 SYLIELDFSNNSISG--SIFHFICYRANELNKWQILYLSG-NFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLI 182 (453)
Q Consensus 106 ~~L~~L~l~~~~l~~--~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 182 (453)
.+++.|+++++.+.+ ..+ ..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~----~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP----SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC----GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccC----hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 356666666666664 333 3444689999999995 888888888899999999999999999888888899999
Q ss_pred cccEEEccCCcccc-ccccccccCCCCEEeCCCCcccccCchHHHhccC-cceEEEecCCcccccCchhhcCCCCccEEE
Q 048417 183 SLQSLHLRKNNLCG-TIHSLENCTALMTLDVGENELVENIPTWIRERFS-RIVVLILRSNKFYNLLPKELCDLAFLQIVD 260 (453)
Q Consensus 183 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 260 (453)
+|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+..+. .++ .|++|++++|.+.+..+..+..++ |++|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 99999999999884 447788899999999999999877777665 455 899999999999888888888887 99999
Q ss_pred ccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC
Q 048417 261 LADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340 (453)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 340 (453)
+++|.+.+..|..+.. +++|+.|++++|.+
T Consensus 204 Ls~N~l~~~~~~~~~~--------------------------------------------------l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGS--------------------------------------------------DKNTQKIHLAKNSL 233 (313)
T ss_dssp CCSSEEEECCGGGCCT--------------------------------------------------TSCCSEEECCSSEE
T ss_pred CcCCcccCcCCHHHhc--------------------------------------------------CCCCCEEECCCCce
Confidence 9999998666655544 45578888888888
Q ss_pred CCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCc-ccc
Q 048417 341 SGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNN-LTG 414 (453)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~ 414 (453)
++..+. +..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+ +.+
T Consensus 234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 755554 777899999999999999889999999999999999999999888876 889999999999998 554
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=217.78 Aligned_cols=238 Identities=18% Similarity=0.144 Sum_probs=155.2
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccc--cccccCCCCE
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH--SLENCTALMT 209 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~ 209 (453)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++.++. .+..+++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence 46667777777776665555556666777777777776664433346666677777777776665543 4556666666
Q ss_pred EeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCc
Q 048417 210 LDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGK 289 (453)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~ 289 (453)
|++++|......+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++..
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~---------------- 216 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEI---------------- 216 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHH----------------
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhh----------------
Confidence 6666663222222222334566666666666665555566666666666666666654 22211
Q ss_pred chhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccc---cCCCCCcEEEcCCccCCC
Q 048417 290 AIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEV---TNLKVLQSVNLSNNFFTG 366 (453)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~n~~~~ 366 (453)
....+++|++|++++|.+++..+..+ ...+.++.++++++.+.+
T Consensus 217 ---------------------------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 217 ---------------------------------FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp ---------------------------------HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred ---------------------------------hhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 11235678888888888875444333 235678888888887764
Q ss_pred ----CCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 048417 367 ----RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 367 ----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
.+|+++..+++|++|++++|+++...+..+..+++|++|++++|++.+..|.+
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 35677889999999999999999443344689999999999999999876644
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.1e-26 Score=212.38 Aligned_cols=250 Identities=20% Similarity=0.186 Sum_probs=161.6
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCC--CCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN--LPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
+++++|++++|.++...+..+..+++|++|++++|.+... .+..+..+++|+.|++++|.+..++..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3455555555555522222345555555555555555421 12333445556666666665555554455566666666
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCC-CcccccccccccceeccccCcc
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSG-EVPRCIHNLRAMVTMNSHAGKA 290 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~i~~~~~ 290 (453)
+++|.+.+..+...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------- 171 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF---------------- 171 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC----------------
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH----------------
Confidence 666655443222233455666666666666666566666777777777777777653 233333
Q ss_pred hhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCc
Q 048417 291 IQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPE 370 (453)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 370 (453)
..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+.
T Consensus 172 ----------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 172 ----------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ----------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ----------------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 2356678899999988877788888899999999999999866666
Q ss_pred cccCCCCCCEEEcCCCcCCCCCCccccCCC-CCCEEEccCCcccccCCCC---cccceeecccCCCC
Q 048417 371 SVGTMRSLESIDFSLNQLSGEIPQSMSSLK-FLNHLNLSNNNLTGKIPSS---TQLQSFDASSFSGN 433 (453)
Q Consensus 371 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~---~~l~~L~~l~l~~n 433 (453)
.+..+++|++|++++|++.+..+..+..++ +|++|++++|++++..+.. ..+...+.+.+..+
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~ 284 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 284 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccc
Confidence 788899999999999999988888888885 8999999999998653321 33444444444433
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.9e-28 Score=244.84 Aligned_cols=394 Identities=11% Similarity=-0.002 Sum_probs=275.4
Q ss_pred CCCcccEEEccCCcCCCCCCccccC-CCc-ccEEEcCCCc-ccccchhhHhhcCCCeEEEEccCCcccCCCc-----Ccc
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYS-QKH-LNYLDLSYSG-IIGTIPNIFWSSASQIYVLDLSFNQIHGQIP-----NLT 82 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~-~~~-L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~-----~l~ 82 (453)
.+++|++|+|++|.+++..+..+.. +++ |++|+++++. +.......+...+++|++|++++|.+++... ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6899999999999887655555655 445 9999999986 3222222333688999999999998765321 235
Q ss_pred CCCCCcEEEccCCcccccc----c---cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCC---CCCch
Q 048417 83 NAAQLEVLSLGSNSFSIAL----P---LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQ---GELPD 152 (453)
Q Consensus 83 ~~~~L~~L~l~~~~~~~~~----~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~ 152 (453)
.+++|+.|++++|.+.... . ..+++|++|++++|.+.+ +...+..+++|++|+++..... ...+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 6789999999999987322 1 236799999999988764 3344557999999999864322 22334
Q ss_pred hhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc--ccccccCCCCEEeCCCCcccccCchHHHhccC
Q 048417 153 CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGENELVENIPTWIRERFS 230 (453)
Q Consensus 153 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 230 (453)
.+..+++|+.+.++++... ..|..+..+++|++|++++|.++... ..+..+++|+.|+++ +.+.+.....+...++
T Consensus 265 ~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred HhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence 5677899999999886444 56677788999999999999865433 446789999999998 4444444445556789
Q ss_pred cceEEEecC-----------CcccccC-chhhcCCCCccEEEccCCcCCCCccccccc-ccccceeccccCc----chhh
Q 048417 231 RIVVLILRS-----------NKFYNLL-PKELCDLAFLQIVDLADNNLSGEVPRCIHN-LRAMVTMNSHAGK----AIQY 293 (453)
Q Consensus 231 ~L~~L~l~~-----------~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~l~i~~~~----~~~~ 293 (453)
+|++|++.+ +.++... ......+++|++|++..+.+++..+..+.. +++|+.|++..+. ....
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 999999993 4444332 223456899999999888888777766665 8899999987432 1111
Q ss_pred hhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCc--CCCcCCcccc-CCCCCcEEEcCCccCCCC-CC
Q 048417 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNN--FSGKIPLEVT-NLKVLQSVNLSNNFFTGR-IP 369 (453)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~-~~~~L~~L~l~~n~~~~~-~~ 369 (453)
+.. . ........+++|++|+++.|. +++..+..+. .+++|+.|++++|.+++. ++
T Consensus 423 p~~-~--------------------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 423 PLD-N--------------------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCH-H--------------------HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred hHH-H--------------------HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 000 0 001113457889999997643 5544443343 478999999999998753 34
Q ss_pred ccccCCCCCCEEEcCCCcCCCC-CCccccCCCCCCEEEccCCccccc-CCCC-cccceeecccCCC
Q 048417 370 ESVGTMRSLESIDFSLNQLSGE-IPQSMSSLKFLNHLNLSNNNLTGK-IPSS-TQLQSFDASSFSG 432 (453)
Q Consensus 370 ~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~-~~~~-~~l~~L~~l~l~~ 432 (453)
..+..+++|++|++++|.+++. ++.....+++|++|++++|++++. +..+ ..++.+....+..
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 4557889999999999997643 344456789999999999998753 1112 3455555555543
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.1e-26 Score=210.29 Aligned_cols=227 Identities=16% Similarity=0.184 Sum_probs=167.1
Q ss_pred cCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeC
Q 048417 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDV 212 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 212 (453)
.++++.|+++++.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+..++..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 578888899888888 67777888888999999988888 7777888888899999988888877777888888888888
Q ss_pred CCCcccccCchHHH--------hccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceec
Q 048417 213 GENELVENIPTWIR--------ERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN 284 (453)
Q Consensus 213 ~~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 284 (453)
++|.+.+..|..+. ..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l---------- 225 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI---------- 225 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG----------
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh----------
Confidence 88776666665432 12455555555555554 34445555555555555555555 233222
Q ss_pred cccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccC
Q 048417 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFF 364 (453)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 364 (453)
..+++|++|++++|++.+..|..+..+++|+.|++++|.+
T Consensus 226 ----------------------------------------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 226 ----------------------------------------HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp ----------------------------------------GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred ----------------------------------------ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 2345577788888777777777777888888888888877
Q ss_pred CCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccc
Q 048417 365 TGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 365 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 413 (453)
.+.+|..+..+++|++|++++|.+.+.+|+.+..+++|+.+++..+.+.
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7777877888888888888888888788888888888888888766554
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.2e-25 Score=216.05 Aligned_cols=228 Identities=22% Similarity=0.228 Sum_probs=137.8
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDV 212 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l 212 (453)
++++.|++++|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|.++.+. ..+..+++|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45666666666665444455566666666666666665554455556666666666666665554 24555566666666
Q ss_pred CCCcccccCchHHHhccCcceEEEecCCc-ccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch
Q 048417 213 GENELVENIPTWIRERFSRIVVLILRSNK-FYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
++|.+.. ++...+..+++|++|++++|. +....+..+..+++|++|++++|.+. .+|.
T Consensus 144 ~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~------------------- 202 (440)
T 3zyj_A 144 RNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN------------------- 202 (440)
T ss_dssp CSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-------------------
T ss_pred CCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-------------------
Confidence 6665543 222233345555555555532 22222334555555555555555554 2221
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (453)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..
T Consensus 203 --------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 250 (440)
T 3zyj_A 203 --------------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250 (440)
T ss_dssp --------------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS
T ss_pred --------------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh
Confidence 123455777777777777666667777777777777777777666666
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
|..+++|++|++++|+++...+..+..+++|+.|++++|++..
T Consensus 251 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 7777777777777777776666667777777777777777764
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.1e-25 Score=207.45 Aligned_cols=244 Identities=18% Similarity=0.193 Sum_probs=191.1
Q ss_pred cEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccc---cccccccCCCCEEeCC
Q 048417 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGT---IHSLENCTALMTLDVG 213 (453)
Q Consensus 137 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~ 213 (453)
+.++++++.++ .+|..+ .+++++|++++|.+....+..|..+++|+.|++++|.+... ...+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 56777777777 556533 36888999999988855445578888999999998888654 2455567888888888
Q ss_pred CCcccccCchHHHhccCcceEEEecCCcccccCc-hhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchh
Q 048417 214 ENELVENIPTWIRERFSRIVVLILRSNKFYNLLP-KELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQ 292 (453)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~ 292 (453)
+|.+.. .+.. +..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+.
T Consensus 87 ~n~i~~-l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------- 147 (306)
T 2z66_A 87 FNGVIT-MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN----------------- 147 (306)
T ss_dssp SCSEEE-EEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-----------------
T ss_pred CCcccc-Chhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-----------------
Confidence 887754 3333 2357788888888887766544 4677778888888888877644443332
Q ss_pred hhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCC-cCCccccCCCCCcEEEcCCccCCCCCCcc
Q 048417 293 YQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG-KIPLEVTNLKVLQSVNLSNNFFTGRIPES 371 (453)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (453)
.+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+.+..+..
T Consensus 148 ---------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 148 ---------------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp ---------------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ---------------------------------cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence 35668999999999875 57888999999999999999999777889
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-ccc-ceeecccCCCCCc
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQL-QSFDASSFSGNDL 435 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l-~~L~~l~l~~n~l 435 (453)
+..+++|++|++++|++.+..+..+..+++|++|++++|++++..+.. ..+ ++|+.+++++|++
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 999999999999999999777778999999999999999999876654 566 4899999999974
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=8e-29 Score=250.03 Aligned_cols=401 Identities=13% Similarity=0.024 Sum_probs=215.7
Q ss_pred cCCCcccEEEccCCcCCCCC---C------------ccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCC-c
Q 048417 10 IPPFQLATLGLRHCHLGSRF---P------------SWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN-Q 73 (453)
Q Consensus 10 ~~~~~L~~L~L~~~~~~~~~---~------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~-~ 73 (453)
..+++|++|+++++...... + .....+++|++|+++++.+++..+..+...+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 45678888888887531111 1 112467788888888888766666666446788888888887 4
Q ss_pred ccC--CCcCccCCCCCcEEEccCCcccccccc-------ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCC
Q 048417 74 IHG--QIPNLTNAAQLEVLSLGSNSFSIALPL-------ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGN 144 (453)
Q Consensus 74 ~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 144 (453)
++. ......++++|++|++++|.+...... .+++|++|+++++. .......+...+..+++|++|++++|
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 443 222234677888888888876543322 34578888888776 22222333333345788888888877
Q ss_pred CCCCCCchhhhcCCcccEEEcccCcc-------C-------------------C----CCCccccccccccEEEccCCcc
Q 048417 145 FLQGELPDCWMNYQNLMILDLSNNKF-------T-------------------G----NLPISLGSLISLQSLHLRKNNL 194 (453)
Q Consensus 145 ~~~~~~~~~l~~l~~L~~L~l~~~~~-------~-------------------~----~~~~~l~~l~~L~~L~l~~~~~ 194 (453)
.....++..+..+++|++|+++.+.. . . .++..+..+++|+.|++++|.+
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 32223555666677777777554421 1 0 1111122345566666666554
Q ss_pred cccc--ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecC---------CcccccCchhh-cCCCCccEEEcc
Q 048417 195 CGTI--HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRS---------NKFYNLLPKEL-CDLAFLQIVDLA 262 (453)
Q Consensus 195 ~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~ 262 (453)
+... ..+..+++|+.|++++| +.......+...+++|++|++.. +.+++.....+ ..+++|++|.+.
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence 3221 22345566666666655 32222222333455666666522 22222111122 235566666555
Q ss_pred CCcCCCCcccccc-cccccceeccc--c---CcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecC
Q 048417 263 DNNLSGEVPRCIH-NLRAMVTMNSH--A---GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFS 336 (453)
Q Consensus 263 ~~~~~~~~~~~~~-~~~~L~~l~i~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 336 (453)
.+.+++..+..+. .+++|+.|++. + +..++..... .........+++|+.|+++
T Consensus 381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~--------------------~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD--------------------IGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH--------------------HHHHHHHHHCTTCCEEECC
T ss_pred cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh--------------------hHHHHHHhhCCCccEEeec
Confidence 5555543333333 35566666655 1 1111100000 0001112446677888876
Q ss_pred CCcCCCcCCccccC-CCCCcEEEcCCccCCCCCCccc-cCCCCCCEEEcCCCcCCCCCCc-cccCCCCCCEEEccCCccc
Q 048417 337 KNNFSGKIPLEVTN-LKVLQSVNLSNNFFTGRIPESV-GTMRSLESIDFSLNQLSGEIPQ-SMSSLKFLNHLNLSNNNLT 413 (453)
Q Consensus 337 ~~~l~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~ 413 (453)
+ .+++..+..+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... ....+++|++|++++|+++
T Consensus 441 ~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 441 G-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp S-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred C-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 6 554443334433 6778888888777764433333 5577788888888877533222 3445777888888888774
Q ss_pred cc-CCCC-cccceeecccCCCC
Q 048417 414 GK-IPSS-TQLQSFDASSFSGN 433 (453)
Q Consensus 414 ~~-~~~~-~~l~~L~~l~l~~n 433 (453)
.. +..+ ..++.|+...+..+
T Consensus 520 ~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 520 FGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHHHHhCCCCEEEEecCC
Confidence 21 1111 34455555444443
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.3e-26 Score=218.05 Aligned_cols=251 Identities=17% Similarity=0.177 Sum_probs=162.0
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccccc-ccccCCCCEEeC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHS-LENCTALMTLDV 212 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 212 (453)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.... +..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 3556666666655543333555666666666666666655455566666666666666666555432 555566666666
Q ss_pred CCCcccccCch-HHHhccCcceEEEecCC-cccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcc
Q 048417 213 GENELVENIPT-WIRERFSRIVVLILRSN-KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA 290 (453)
Q Consensus 213 ~~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~ 290 (453)
++|.+.. ++. ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..|..+
T Consensus 132 ~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---------------- 194 (353)
T 2z80_A 132 LGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL---------------- 194 (353)
T ss_dssp TTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT----------------
T ss_pred CCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH----------------
Confidence 6665543 222 22334555666666555 2444344455555556666665555553333333
Q ss_pred hhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCc
Q 048417 291 IQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPE 370 (453)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 370 (453)
..+++|++|++++|.++......+..+++|+.|++++|.+.+..+.
T Consensus 195 ----------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 195 ----------------------------------KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp ----------------------------------TTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred ----------------------------------hccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 3456689999999988743334455689999999999999865444
Q ss_pred cc---cCCCCCCEEEcCCCcCCC----CCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCc
Q 048417 371 SV---GTMRSLESIDFSLNQLSG----EIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDL 435 (453)
Q Consensus 371 ~l---~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l 435 (453)
.+ ...+.++.++++++.+.+ .+|+.+..+++|++|++++|+++...+.. ..+++|+.+++++|++
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 33 346778999999998874 36677889999999999999999655554 7899999999999953
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4.2e-25 Score=214.84 Aligned_cols=229 Identities=21% Similarity=0.226 Sum_probs=144.7
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDV 212 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l 212 (453)
+++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45666666666666555555666666666666666666555556666666666666666666555 33555666666666
Q ss_pred CCCcccccCchHHHhccCcceEEEecCCc-ccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch
Q 048417 213 GENELVENIPTWIRERFSRIVVLILRSNK-FYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
++|.+.. ++...+..+++|+.|++++|. +....+..+..+++|++|++++|.+. .+|.
T Consensus 155 ~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~------------------- 213 (452)
T 3zyi_A 155 RNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN------------------- 213 (452)
T ss_dssp CSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCC-------------------
T ss_pred CCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-cccc-------------------
Confidence 6666543 333333455566666665533 22222334555556666666665554 2221
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (453)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..
T Consensus 214 --------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 261 (452)
T 3zyi_A 214 --------------------------------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261 (452)
T ss_dssp --------------------------------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTT
T ss_pred --------------------------------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHH
Confidence 123556777777777777666777777777888888777777666677
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 415 (453)
+..+++|++|++++|++++..+..+..+++|++|++++|++...
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 77777788888887777766666677777777888877777643
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.7e-26 Score=212.49 Aligned_cols=248 Identities=19% Similarity=0.156 Sum_probs=192.5
Q ss_pred hhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCC
Q 048417 129 RANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALM 208 (453)
Q Consensus 129 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 208 (453)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.++++. ..++|+
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 34457889999999999987777788899999999999998875433 788899999999999887654 337899
Q ss_pred EEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccC
Q 048417 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288 (453)
Q Consensus 209 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~ 288 (453)
+|++++|.+.+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 103 ~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------- 165 (317)
T 3o53_A 103 TLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA------------- 165 (317)
T ss_dssp EEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-------------
T ss_pred EEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh-------------
Confidence 999999888654332 367788888888888777666777888888888888888743333221
Q ss_pred cchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC
Q 048417 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI 368 (453)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 368 (453)
..+++|++|++++|.+++. +. ...+++|+.|++++|.+. .+
T Consensus 166 ------------------------------------~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l 206 (317)
T 3o53_A 166 ------------------------------------ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FM 206 (317)
T ss_dssp ------------------------------------GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EE
T ss_pred ------------------------------------hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cc
Confidence 2356688899999988744 32 334889999999999998 55
Q ss_pred CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccc-ccCCCC-cccceeecccCCCCC-ccCCC
Q 048417 369 PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT-GKIPSS-TQLQSFDASSFSGND-LCRAP 439 (453)
Q Consensus 369 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~-~~l~~L~~l~l~~n~-l~~~~ 439 (453)
+..+..+++|++|++++|++. .+|..+..+++|+.|++++|++. +.++.. ..++.|+.+++++++ +.+.+
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence 666888999999999999998 67778889999999999999998 444443 678888888888665 55543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3e-25 Score=202.42 Aligned_cols=244 Identities=19% Similarity=0.142 Sum_probs=156.1
Q ss_pred cEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCC
Q 048417 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGEN 215 (453)
Q Consensus 137 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~ 215 (453)
.+++++++.++ .+|.. ..+++++|++++|.+.+..+..|..+++|+.|++++|.+++.. ..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45556655555 34432 2356666666666666555455666666666666666666553 45666666677776666
Q ss_pred c-ccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhh
Q 048417 216 E-LVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQ 294 (453)
Q Consensus 216 ~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~ 294 (453)
. +.. .+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 91 ~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------- 150 (285)
T 1ozn_A 91 AQLRS-VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR------------------- 150 (285)
T ss_dssp TTCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-------------------
T ss_pred CCccc-cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc-------------------
Confidence 5 433 3222234566777777777776666666677777777777777777633332232
Q ss_pred hhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccC
Q 048417 295 FLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGT 374 (453)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 374 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 151 -------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 151 -------------------------------DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp -------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred -------------------------------cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccC
Confidence 2455677777777777555556777788888888888887666777777
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC
Q 048417 375 MRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 375 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~ 434 (453)
+++|++|++++|.+.+..++.+..+++|++|++++|++....+.......++.+..+.+.
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~ 259 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECC
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCc
Confidence 888888888888887655566777888888888888877544433333344444554444
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=4.8e-25 Score=204.69 Aligned_cols=227 Identities=19% Similarity=0.230 Sum_probs=191.2
Q ss_pred CCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 157 YQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 157 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
..+++.|+++++.+. .+|..+..+++|++|++++|.+..++..+..+++|++|++++|.+. .+|..+ ..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEE
Confidence 478999999999998 6777788899999999999999877778888999999999999886 566554 4688899999
Q ss_pred ecCCcccccCchhhcC---------CCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhh
Q 048417 237 LRSNKFYNLLPKELCD---------LAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIAT 307 (453)
Q Consensus 237 l~~~~~~~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~ 307 (453)
+++|...+.+|..+.. +++|++|++++|.+. .+|..+..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~------------------------------- 204 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN------------------------------- 204 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-------------------------------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-------------------------------
Confidence 9888777777666543 788888888888877 66654433
Q ss_pred hhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCc
Q 048417 308 LLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 387 (453)
+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|++|++++|.
T Consensus 205 -------------------l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 205 -------------------LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp -------------------CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred -------------------CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 556789999999998 566678999999999999999998999999999999999999999
Q ss_pred CCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCC
Q 048417 388 LSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRA 438 (453)
Q Consensus 388 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~ 438 (453)
+.+.+|..+..+++|++|++++|++.+.+|.. ..+++|+.+++..+.+...
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 99999999999999999999999999888765 8899999999876654443
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=5.1e-24 Score=206.50 Aligned_cols=247 Identities=22% Similarity=0.204 Sum_probs=192.2
Q ss_pred CcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 87 LEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
.+.++..+..+...+....+.++.|++++|.+...... .+..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34444445445444444445566666666665543322 34468888999999888886666778888999999999
Q ss_pred cCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
+|.++...+..|..+++|+.|++++|.+..+. ..+..+++|+.|+++++.....++...+..+++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99888666667888889999999999888766 46788889999999886555556665667789999999999988754
Q ss_pred CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhh
Q 048417 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325 (453)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (453)
+ .+..+++|++|++++|.+.+..+..+..
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------- 229 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQG------------------------------------------------- 229 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTTT-------------------------------------------------
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhcc-------------------------------------------------
Confidence 3 4788999999999999998555554443
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 230 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 230 -LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp -CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred -CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 455789999999999888889999999999999999999666678899999999999999875
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=3.8e-24 Score=208.09 Aligned_cols=247 Identities=20% Similarity=0.186 Sum_probs=195.6
Q ss_pred CcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 87 LEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
.+.++..+..+...+....+++++|++++|.+...... .+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34455555555544444445666666666666543332 34468899999999999887777788889999999999
Q ss_pred cCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
+|.+....+..|..+++|+.|++++|.+..+. ..+..+++|+.|+++++...+.++...+..+++|+.|++++|.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99998666667888999999999999988776 46788899999999986555656666667889999999999998764
Q ss_pred CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhh
Q 048417 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325 (453)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (453)
+ .+..+++|++|++++|.+.+..+..+..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------- 240 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHG------------------------------------------------- 240 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTT-------------------------------------------------
T ss_pred -c-cccccccccEEECcCCcCcccCcccccC-------------------------------------------------
Confidence 3 5788899999999999998655555443
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 241 -l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 241 -LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred -ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 455788999999998888888999999999999999999666677889999999999999876
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.5e-23 Score=207.68 Aligned_cols=262 Identities=23% Similarity=0.221 Sum_probs=167.1
Q ss_pred CeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEecc
Q 048417 63 QIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLS 142 (453)
Q Consensus 63 ~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~ 142 (453)
+++.|+++++.++..+..+. ++|+.|++++|.+..... .+++|++|++++|.++.... .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPV--------LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCC--------CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCC--------CCCCCCEEECc
Confidence 45666666666655444333 456666666665553322 44556666666665542111 35667777777
Q ss_pred CCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCc
Q 048417 143 GNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIP 222 (453)
Q Consensus 143 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 222 (453)
+|.+++ +|. .+.+|++|++++|.++. +|.. +++|+.|++++|.+++++. .+++|+.|++++|.+.. ++
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-Cc
Confidence 776663 333 45667777777776663 3332 3667777777776665432 23566777777776644 33
Q ss_pred hHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccc
Q 048417 223 TWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRA 302 (453)
Q Consensus 223 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~ 302 (453)
..+++|+.|++++|.+.+. +. ..++|+.|++++|.+. .+|.
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~------------------------------ 218 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPA------------------------------ 218 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCC------------------------------
T ss_pred ----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCC------------------------------
Confidence 2356677777777766542 22 2356777777777765 3331
Q ss_pred hhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEE
Q 048417 303 PLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESID 382 (453)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 382 (453)
.+++|+.|++++|.+++ +| ..+++|+.|++++|.+. .+|. .+++|+.|+
T Consensus 219 -----------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 219 -----------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLS 267 (622)
T ss_dssp -----------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred -----------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEe
Confidence 13457888888888874 44 44678899999998888 5665 567899999
Q ss_pred cCCCcCCCCCCccccCCCCCCEEEccCCcccccCCC
Q 048417 383 FSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPS 418 (453)
Q Consensus 383 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 418 (453)
+++|.+. .+|..+..+++|+.|++++|++++.++.
T Consensus 268 Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 268 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 9999888 7788888889999999999988875543
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5e-27 Score=236.89 Aligned_cols=385 Identities=13% Similarity=0.067 Sum_probs=259.2
Q ss_pred cCCCcccEEEccCCcCCCCCCcccc-CCCcccEEEcCCC-cccccchhhHhhcCCCeEEEEccCCcccCCC-----cCcc
Q 048417 10 IPPFQLATLGLRHCHLGSRFPSWLY-SQKHLNYLDLSYS-GIIGTIPNIFWSSASQIYVLDLSFNQIHGQI-----PNLT 82 (453)
Q Consensus 10 ~~~~~L~~L~L~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-----~~l~ 82 (453)
..+++|++|+|++|.+++..+..+. .+++|++|++++| .+.......+...+++|++|++++|.+++.. ....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3588999999999998766555564 6899999999999 5544334444478999999999999876522 2233
Q ss_pred CCCCCcEEEccCCc--ccccc----ccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCC-----------
Q 048417 83 NAAQLEVLSLGSNS--FSIAL----PLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNF----------- 145 (453)
Q Consensus 83 ~~~~L~~L~l~~~~--~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~----------- 145 (453)
.+++|+.|++++|. +.... ...+++|++|++++|... ..+...+..+++|++|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL----EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH----HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH----HHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 67799999999986 22111 122589999999988321 1244444567777777754431
Q ss_pred ---------------CC----CCCchhhhcCCcccEEEcccCccCCCCC-ccccccccccEEEccCCccccc-c-ccccc
Q 048417 146 ---------------LQ----GELPDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQSLHLRKNNLCGT-I-HSLEN 203 (453)
Q Consensus 146 ---------------~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~-~-~~~~~ 203 (453)
+. ..++..+..+++|++|++++|.+.+... ..+..+++|+.|++++| +... . .....
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 11 1233334467899999999998663222 22457899999999988 4321 1 23345
Q ss_pred cCCCCEEeCCC---------CcccccCchHHHhccCcceEEEecCCcccccCchhhc-CCCCccEEEcc--C----CcCC
Q 048417 204 CTALMTLDVGE---------NELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELC-DLAFLQIVDLA--D----NNLS 267 (453)
Q Consensus 204 ~~~L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~ 267 (453)
+++|+.|++.+ +.+.+.....+...+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 89999999843 3444433344445689999998888888665544554 58999999999 3 3444
Q ss_pred C-----CcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCC
Q 048417 268 G-----EVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG 342 (453)
Q Consensus 268 ~-----~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 342 (453)
. .++..+..+++|+.|++++ ......... ....+++|+.|++++|.+++
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~-------------------------l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY-------------------------IGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH-------------------------HHHHCTTCCEEEEESCCSSH
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH-------------------------HHHhchhccEeeccCCCCcH
Confidence 1 1223367789999999966 211111100 01136789999999999875
Q ss_pred cCCccc-cCCCCCcEEEcCCccCCCCCCc-cccCCCCCCEEEcCCCcCCCCCCccc-cCCCCCCEEEccCCcccccCCCC
Q 048417 343 KIPLEV-TNLKVLQSVNLSNNFFTGRIPE-SVGTMRSLESIDFSLNQLSGEIPQSM-SSLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 343 ~~~~~~-~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
..+..+ ..+++|+.|++++|.+++.... ....+++|++|++++|+++....+.+ ..+|.|+...+..+.-....+..
T Consensus 471 ~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~ 550 (594)
T 2p1m_B 471 LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTT
T ss_pred HHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcccccccc
Confidence 544444 5689999999999998644333 34568999999999999864433444 56788888888777655434444
Q ss_pred ccccee
Q 048417 420 TQLQSF 425 (453)
Q Consensus 420 ~~l~~L 425 (453)
.....+
T Consensus 551 ~~~~~~ 556 (594)
T 2p1m_B 551 CPVERV 556 (594)
T ss_dssp SBCSEE
T ss_pred chhhhh
Confidence 344333
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=9.4e-26 Score=208.80 Aligned_cols=259 Identities=21% Similarity=0.147 Sum_probs=174.7
Q ss_pred cccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEcc
Q 048417 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLG 93 (453)
Q Consensus 14 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~ 93 (453)
.++..+++.+.+.......+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 34555555555533333445556677777777777755444444 677777777777777765443 6677777777777
Q ss_pred CCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCC
Q 048417 94 SNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN 173 (453)
Q Consensus 94 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 173 (453)
+|.+..... .++|++|++++|.+...... .+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus 89 ~n~l~~l~~--~~~L~~L~l~~n~l~~~~~~-------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELLV--GPSIETLHAANNNISRVSCS-------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEEE--CTTCCEEECCSSCCSEEEEC-------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCccccccC--CCCcCEEECCCCccCCcCcc-------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 777664332 36777777777777643322 366788888888877765555677777888888888877755
Q ss_pred CCcccc-ccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcC
Q 048417 174 LPISLG-SLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCD 252 (453)
Q Consensus 174 ~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 252 (453)
.+..+. .+++|+.|++++|.++... ....+++|+.|++++|.+.+..+ . +..+++|+.|++++|.+.. +|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~L~~L~L~~N~l~~-l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGP-E-FQSAAGVTWISLRNNKLVL-IEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEECG-G-GGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCCcchh-h-hcccCcccEEECcCCcccc-hhhHhhc
Confidence 555543 5677888888888777654 23347778888888887765333 3 3467788888888887764 4556777
Q ss_pred CCCccEEEccCCcCC-CCcccccccccccceecccc
Q 048417 253 LAFLQIVDLADNNLS-GEVPRCIHNLRAMVTMNSHA 287 (453)
Q Consensus 253 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~i~~ 287 (453)
+++|+.|++++|.+. +..+..+..++.++.+++.+
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 888888888888887 56667777777777665553
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-24 Score=213.00 Aligned_cols=259 Identities=18% Similarity=0.141 Sum_probs=199.7
Q ss_pred hhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccccccccc
Q 048417 125 FICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENC 204 (453)
Q Consensus 125 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 204 (453)
.+......+++|++|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|+.|++++|.+++++. .
T Consensus 25 ~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~ 98 (487)
T 3oja_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----G 98 (487)
T ss_dssp HHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----C
T ss_pred HHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----C
Confidence 333333456689999999999997777888999999999999999885544 7889999999999998876553 3
Q ss_pred CCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceec
Q 048417 205 TALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMN 284 (453)
Q Consensus 205 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 284 (453)
++|+.|++++|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.
T Consensus 99 ~~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--------- 165 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA--------- 165 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG---------
T ss_pred CCcCEEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh---------
Confidence 7899999999988664432 467889999999988887777888888999999999888755554432
Q ss_pred cccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccC
Q 048417 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFF 364 (453)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 364 (453)
..+++|+.|++++|.+++..+ ...+++|+.|++++|.+
T Consensus 166 ----------------------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 166 ----------------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp ----------------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCC
T ss_pred ----------------------------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCC
Confidence 135668999999999885532 33589999999999999
Q ss_pred CCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccc-ccCCC-CcccceeecccCCCCC--ccCCCC
Q 048417 365 TGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLT-GKIPS-STQLQSFDASSFSGND--LCRAPL 440 (453)
Q Consensus 365 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~l~l~~n~--l~~~~~ 440 (453)
. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. +.+|. ...++.|+.+++..+. -.+.+.
T Consensus 204 ~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 281 (487)
T 3oja_A 204 A-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (487)
T ss_dssp C-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSC
T ss_pred C-CCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcc
Confidence 9 45556889999999999999999 57888999999999999999998 44433 3667788888775222 223344
Q ss_pred CCCCCC
Q 048417 441 SGNCSE 446 (453)
Q Consensus 441 ~~~c~~ 446 (453)
.|.|..
T Consensus 282 ~c~~~~ 287 (487)
T 3oja_A 282 ECTVPT 287 (487)
T ss_dssp CCSSTT
T ss_pred cccCCc
Confidence 555543
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.1e-24 Score=196.81 Aligned_cols=248 Identities=20% Similarity=0.233 Sum_probs=159.2
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCc-ccccc-ccccccCCCCEEe
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN-LCGTI-HSLENCTALMTLD 211 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~ 211 (453)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|. +.... ..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 445555555555553333445555555555555555554445555555556666665554 44442 4455556666666
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcch
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAI 291 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~ 291 (453)
+++|.+.+..+. .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 112 l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------- 174 (285)
T 1ozn_A 112 LDRCGLQELGPG-LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR---------------- 174 (285)
T ss_dssp CTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT----------------
T ss_pred CCCCcCCEECHh-HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc----------------
Confidence 666665443232 234566777777777777666666678888899999999888733222232
Q ss_pred hhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcc
Q 048417 292 QYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPES 371 (453)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 371 (453)
.+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..
T Consensus 175 ----------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 175 ----------------------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp ----------------------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred ----------------------------------CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH
Confidence 3456788899999888777888889999999999999998655567
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC---cccceeecccCCCC
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS---TQLQSFDASSFSGN 433 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~l~~L~~l~l~~n 433 (453)
+..+++|+.|++++|++...-+. ..-...++.+..+.+.+....|.. ..+..++..++.||
T Consensus 221 ~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 88999999999999988743221 111223455556777777666543 34566666666655
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=3.4e-25 Score=204.55 Aligned_cols=248 Identities=19% Similarity=0.252 Sum_probs=156.0
Q ss_pred cCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccC-CCCCcccc-------ccccccEEEccCCcccccc-ccc--
Q 048417 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT-GNLPISLG-------SLISLQSLHLRKNNLCGTI-HSL-- 201 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~-~~~-- 201 (453)
.++|+++++++|.+ .+|..+... |++|++++|.+. ...|..+. .+++|++|++++|.+++.. ..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 44555555655555 344433332 555555555553 22232222 3556666666666655322 222
Q ss_pred cccCCCCEEeCCCCcccccCchHHHhcc-----CcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCc--cccc
Q 048417 202 ENCTALMTLDVGENELVENIPTWIRERF-----SRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEV--PRCI 274 (453)
Q Consensus 202 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~ 274 (453)
..+++|++|++++|.+.+. +..+ ..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+ +..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5566666666666666554 3332 233 67777777777777766677777788888888887765321 1111
Q ss_pred ccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCc---CCccccCC
Q 048417 275 HNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK---IPLEVTNL 351 (453)
Q Consensus 275 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~ 351 (453)
.+..+++|++|++++|.+++. ....+..+
T Consensus 196 ------------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 196 ------------------------------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp ------------------------------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred ------------------------------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 012356678888888877621 12234567
Q ss_pred CCCcEEEcCCccCCCCCC-ccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccC
Q 048417 352 KVLQSVNLSNNFFTGRIP-ESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSF 430 (453)
Q Consensus 352 ~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l 430 (453)
++|+.|++++|.+.+..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |....+++|+.+++
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L 303 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSL 303 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEEC
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEec
Confidence 888888888888876554 45566788888888888888 6666655 7888888888888865 55778888888888
Q ss_pred CCCCccCC
Q 048417 431 SGNDLCRA 438 (453)
Q Consensus 431 ~~n~l~~~ 438 (453)
++|++++.
T Consensus 304 ~~N~l~~~ 311 (312)
T 1wwl_A 304 KGNPFLDS 311 (312)
T ss_dssp TTCTTTCC
T ss_pred cCCCCCCC
Confidence 88887654
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=7.6e-23 Score=204.17 Aligned_cols=259 Identities=24% Similarity=0.245 Sum_probs=198.8
Q ss_pred CCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEc
Q 048417 86 QLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDL 165 (453)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 165 (453)
+++.|++++|.+...+....++|++|++++|.+..... .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--------CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--------cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 58899999999886665566789999999988774221 3788999999998887 4554 6788889999
Q ss_pred ccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccccc
Q 048417 166 SNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNL 245 (453)
Q Consensus 166 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 245 (453)
++|.+.. +|. .+++|+.|++++|.++.++.. +++|++|++++|.+.+ ++. ..++|+.|++.+|.+...
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCCC
Confidence 9888884 443 457788888888888776543 3788888888887754 332 346788888888887653
Q ss_pred CchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhh
Q 048417 246 LPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYER 325 (453)
Q Consensus 246 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (453)
+ ..+++|+.|++++|.+. .+|..
T Consensus 177 -~---~~~~~L~~L~Ls~N~l~-~l~~~---------------------------------------------------- 199 (622)
T 3g06_A 177 -P---MLPSGLQELSVSDNQLA-SLPTL---------------------------------------------------- 199 (622)
T ss_dssp -C---CCCTTCCEEECCSSCCS-CCCCC----------------------------------------------------
T ss_pred -c---ccCCCCcEEECCCCCCC-CCCCc----------------------------------------------------
Confidence 3 34577888888888776 33321
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+| ..+++|+.|++++|.+. .+|. .+++|+.|
T Consensus 200 -~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L 266 (622)
T 3g06_A 200 -PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSL 266 (622)
T ss_dssp -CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred -cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEE
Confidence 345899999999988 4443 2488999999999998 466 45789999999999999 5565 67899999
Q ss_pred EccCCcccccCCCCcccceeecccCCCCCccCC
Q 048417 406 NLSNNNLTGKIPSSTQLQSFDASSFSGNDLCRA 438 (453)
Q Consensus 406 ~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~~ 438 (453)
++++|+++..++.+..+++|+.+++++|++.+.
T Consensus 267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp ECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred eCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 999999995544568899999999999997653
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.6e-24 Score=208.72 Aligned_cols=236 Identities=19% Similarity=0.114 Sum_probs=134.8
Q ss_pred CCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEE
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 90 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L 90 (453)
.+++|++|+|++|.+++..+.+|..+++|++|++++|.+++..+ +..+++|++|++++|.++..+. .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 34477777777777776666677777777777777777755554 3667777777777777665432 2667777
Q ss_pred EccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhh-cCCcccEEEcccCc
Q 048417 91 SLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWM-NYQNLMILDLSNNK 169 (453)
Q Consensus 91 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~ 169 (453)
++++|.+.......+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+. .+++|++|++++|.
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCccccCCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 7777777665555556666666666666543222 223456666666666666654444443 45666666666666
Q ss_pred cCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCccc-ccCch
Q 048417 170 FTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFY-NLLPK 248 (453)
Q Consensus 170 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~ 248 (453)
+++. + .+..+++|+.|++++|.+++.++.+..+++|+.|++++|.+.+ +|..+ ..+++|+.+++++|++. +..+.
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l-~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKAL-RFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTC-CCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhh-ccCCCCCEEEcCCCCCcCcchHH
Confidence 5533 1 1234555666666666655555445555555555555555543 22221 23344444444444443 22333
Q ss_pred hhcCCCCccEEEc
Q 048417 249 ELCDLAFLQIVDL 261 (453)
Q Consensus 249 ~~~~~~~L~~L~l 261 (453)
.+..++.++.+++
T Consensus 257 ~~~~l~~L~~l~~ 269 (487)
T 3oja_A 257 FFSKNQRVQTVAK 269 (487)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHHhCCCCcEEec
Confidence 3344444444333
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=2.3e-24 Score=199.01 Aligned_cols=255 Identities=20% Similarity=0.215 Sum_probs=163.5
Q ss_pred CCCCCcEEEccCCccccccccccccCcEEECcCCCCCC-chhhhhh---hhhcccCcccEEeccCCCCCCCCchhh--hc
Q 048417 83 NAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISG-SIFHFIC---YRANELNKWQILYLSGNFLQGELPDCW--MN 156 (453)
Q Consensus 83 ~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~ 156 (453)
...+|+.|++++|.+ ..+......++.|++++|.+.. ..+.... ..+..+++|++|++++|.+++..|..+ ..
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred cCCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 344677777777777 3332233446667777666632 1111111 111246677777777777665566544 56
Q ss_pred CCcccEEEcccCccCCCCCcccccc-----ccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccC
Q 048417 157 YQNLMILDLSNNKFTGNLPISLGSL-----ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFS 230 (453)
Q Consensus 157 l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 230 (453)
+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+.. ..+..+++|++|++++|.+.+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------- 190 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-------- 190 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--------
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--------
Confidence 66777777777776644 5555554 66666666666666555 455566666666666655432110
Q ss_pred cceEEEecCCcccccCchh--hcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhh
Q 048417 231 RIVVLILRSNKFYNLLPKE--LCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATL 308 (453)
Q Consensus 231 ~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 308 (453)
.+.. +..+++|++|++++|.+. .++...
T Consensus 191 ---------------~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~---------------------------------- 220 (312)
T 1wwl_A 191 ---------------LISALCPLKFPTLQVLALRNAGME-TPSGVC---------------------------------- 220 (312)
T ss_dssp ---------------HHHHSCTTSCTTCCEEECTTSCCC-CHHHHH----------------------------------
T ss_pred ---------------HHHHHHhccCCCCCEEECCCCcCc-chHHHH----------------------------------
Confidence 1112 266778888888888776 211100
Q ss_pred hhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCC-ccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCc
Q 048417 309 LEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP-LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 387 (453)
...+..+++|++|++++|.+++..| ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|+
T Consensus 221 ------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 221 ------------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp ------------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred ------------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 0111235678889999998886554 45566789999999999998 7777665 889999999999
Q ss_pred CCCCCCccccCCCCCCEEEccCCcccc
Q 048417 388 LSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 388 l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
+++. |. +..+++|++|++++|++++
T Consensus 286 l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 286 LDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 9855 65 8899999999999999885
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4.3e-22 Score=180.58 Aligned_cols=213 Identities=20% Similarity=0.159 Sum_probs=140.1
Q ss_pred CcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEE
Q 048417 158 QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLI 236 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 236 (453)
+++++|++++|.+.+..+..|..+++|+.|++++|.+.+.. ..+..+++|++|++++|.+.+..+. .+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccccEEE
Confidence 35666666666666544445666666666666666665554 3456666666666666666443322 223566666666
Q ss_pred ecCCcccccCchhhcCCCCccEEEccCCcCCCC-cccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHH
Q 048417 237 LRSNKFYNLLPKELCDLAFLQIVDLADNNLSGE-VPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVV 315 (453)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (453)
+.+|.+....+..+..+++|++|++++|.+.+. +|..+.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~---------------------------------------- 146 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS---------------------------------------- 146 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG----------------------------------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc----------------------------------------
Confidence 666666555555566777777777777777632 344333
Q ss_pred hcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCc----EEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCC
Q 048417 316 MKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQ----SVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE 391 (453)
Q Consensus 316 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 391 (453)
.+++|++|++++|.+++..+..+..+++|+ .|++++|.+.+..+..+ ...+|++|++++|++.+.
T Consensus 147 ----------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 147 ----------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSV 215 (276)
T ss_dssp ----------GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCC
T ss_pred ----------cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeec
Confidence 345567777877777765556666556665 78888888884444434 445789999999988866
Q ss_pred CCccccCCCCCCEEEccCCcccccCCCCccc
Q 048417 392 IPQSMSSLKFLNHLNLSNNNLTGKIPSSTQL 422 (453)
Q Consensus 392 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l 422 (453)
.+..+..+++|++|++++|++.+..+.+..+
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred CHhHhcccccccEEEccCCcccccCCchHHH
Confidence 6667788899999999999988776665443
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1e-21 Score=177.35 Aligned_cols=207 Identities=22% Similarity=0.255 Sum_probs=157.5
Q ss_pred cccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEe
Q 048417 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLIL 237 (453)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 237 (453)
..++++++++.++ .+|..+. ++++.|++++|.+..+. ..+..+++|++|++++|.+.. ++...+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEEC
Confidence 5778999998888 4565443 57899999999888776 467888889999998888754 55555556788888888
Q ss_pred cCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhc
Q 048417 238 RSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMK 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (453)
++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------------ 130 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD------------------------------------------ 130 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT------------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC------------------------------------------
Confidence 88888776666777788888888888877643333332
Q ss_pred CCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCcccc
Q 048417 318 GREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMS 397 (453)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 397 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..+.
T Consensus 131 --------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 131 --------SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp --------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred --------cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence 355678888888888766666678888888888888888855556678888888888888888866666788
Q ss_pred CCCCCCEEEccCCcccccCCCC
Q 048417 398 SLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
.+++|+.|++++|++....+..
T Consensus 203 ~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 203 SLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp TCTTCCEEECCSSCBCCSSSSS
T ss_pred cccCCCEEEecCCCeeCCCccH
Confidence 8888888888888887655543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=3.4e-22 Score=181.26 Aligned_cols=227 Identities=22% Similarity=0.216 Sum_probs=174.3
Q ss_pred EEcccCccCCCCCccccccccccEEEccCCccccccc-cccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCc
Q 048417 163 LDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH-SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNK 241 (453)
Q Consensus 163 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 241 (453)
++-.+..+. .+|..+. ++++.|++++|.+++... .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCc
Confidence 334444444 4555443 579999999999887774 78888999999999998865333 334567888899998888
Q ss_pred ccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcc
Q 048417 242 FYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREA 321 (453)
Q Consensus 242 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (453)
+....+..+..+++|++|++++|.+.+..+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------------------------------- 120 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI----------------------------------------------- 120 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC-----------------------------------------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhc-----------------------------------------------
Confidence 887777778888888888888888774333232
Q ss_pred hhhhhcCcccEEecCCCcCCCc-CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCC----EEEcCCCcCCCCCCccc
Q 048417 322 KYERTLNLVRIIDFSKNNFSGK-IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLE----SIDFSLNQLSGEIPQSM 396 (453)
Q Consensus 322 ~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l 396 (453)
..+++|++|++++|.+++. .|..+..+++|+.|++++|.+.+..+..+..+++|+ .|++++|++.+..+..+
T Consensus 121 ---~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~ 197 (276)
T 2z62_A 121 ---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (276)
T ss_dssp ---TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred ---ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc
Confidence 3356689999999999863 588999999999999999999966667777777777 89999999995555444
Q ss_pred cCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCCccCCCCCCCCCCCcc
Q 048417 397 SSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGNDLCRAPLSGNCSEHVS 449 (453)
Q Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~c~~~~~ 449 (453)
. ..+|++|++++|++++.++.. ..+++|+.+++++|+ +.|.|+.+..
T Consensus 198 ~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~-----~~c~c~~l~~ 245 (276)
T 2z62_A 198 K-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP-----WDCSCPRIDY 245 (276)
T ss_dssp C-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC-----BCCCTTTTHH
T ss_pred C-CCcccEEECCCCceeecCHhHhcccccccEEEccCCc-----ccccCCchHH
Confidence 4 458999999999999776665 789999999999994 5567766543
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.7e-21 Score=177.41 Aligned_cols=203 Identities=21% Similarity=0.201 Sum_probs=144.7
Q ss_pred hhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcc
Q 048417 154 WMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRI 232 (453)
Q Consensus 154 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 232 (453)
+.+++++++++++++.++ .+|..+. +.++.|++++|.+.... ..+..+++|+.|++++|.+.+..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcC
Confidence 566778888898888888 4555443 67888888888887765 5677888888888888877553222 356777
Q ss_pred eEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhH
Q 048417 233 VVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDA 312 (453)
Q Consensus 233 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (453)
++|++++|.+.. +|..+..+++|++|++++|++++..+..+.
T Consensus 80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~------------------------------------- 121 (290)
T 1p9a_G 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR------------------------------------- 121 (290)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTT-------------------------------------
T ss_pred CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHc-------------------------------------
Confidence 777777777753 455566677777777777777633333332
Q ss_pred HHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCC
Q 048417 313 FVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEI 392 (453)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 392 (453)
.+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++. .+
T Consensus 122 -------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 122 -------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp -------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred -------------CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 3455677888888877666666777788888888888887444455677888888888888887 66
Q ss_pred CccccCCCCCCEEEccCCcccc
Q 048417 393 PQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 393 ~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
|..+..+++|+.|++++|++..
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBCC
T ss_pred ChhhcccccCCeEEeCCCCccC
Confidence 7777777788888888887764
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=6.5e-21 Score=172.08 Aligned_cols=203 Identities=20% Similarity=0.223 Sum_probs=158.6
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccc-cccccCCCCEEeC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH-SLENCTALMTLDV 212 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 212 (453)
...++++++++.++ .+|..+. ..+++|++++|.+....+..|..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35778899888888 5665443 678899999998886666678888999999999998887764 4577889999999
Q ss_pred CCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchh
Q 048417 213 GENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQ 292 (453)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~ 292 (453)
++|.+.. .+...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus 93 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----------------- 154 (270)
T 2o6q_A 93 TDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD----------------- 154 (270)
T ss_dssp CSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----------------
T ss_pred CCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc-----------------
Confidence 9988855 4444556788899999999988887777788889999999999888733322232
Q ss_pred hhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccc
Q 048417 293 YQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV 372 (453)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 372 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+
T Consensus 155 ---------------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 155 ---------------------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp ---------------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ---------------------------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 34567888888888886666678888899999999998885555667
Q ss_pred cCCCCCCEEEcCCCcCCC
Q 048417 373 GTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 373 ~~l~~L~~L~l~~n~l~~ 390 (453)
..+++|+.|++++|++..
T Consensus 202 ~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 202 DSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred ccccCCCEEEecCCCeeC
Confidence 888899999999998764
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.6e-22 Score=190.71 Aligned_cols=256 Identities=18% Similarity=0.175 Sum_probs=160.9
Q ss_pred EEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCc----hhhhcCC-cccEEEcccCccCCCCCcccccc---
Q 048417 110 ELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELP----DCWMNYQ-NLMILDLSNNKFTGNLPISLGSL--- 181 (453)
Q Consensus 110 ~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l--- 181 (453)
+++++++.+++..+..+ ...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 77 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT----SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77 (362)
T ss_dssp EEECCCCTTCCHHHHHH----TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred ccccccccchHHHHHHH----hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence 35667777765443332 235558888888888875554 5566677 78888888888876666555554
Q ss_pred --ccccEEEccCCcccccc-c----ccccc-CCCCEEeCCCCcccccCchHHHhc----cCcceEEEecCCcccccCch-
Q 048417 182 --ISLQSLHLRKNNLCGTI-H----SLENC-TALMTLDVGENELVENIPTWIRER----FSRIVVLILRSNKFYNLLPK- 248 (453)
Q Consensus 182 --~~L~~L~l~~~~~~~~~-~----~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~- 248 (453)
++|++|++++|.++... . .+..+ ++|++|++++|.+.+..+..+... ..+|++|++++|.+.+....
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 77888888888776544 2 23344 677777777777765444433322 24677777777776543322
Q ss_pred ---hhcCCC-CccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhh
Q 048417 249 ---ELCDLA-FLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYE 324 (453)
Q Consensus 249 ---~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (453)
.+..++ +|++|++++|.+.+..+..+. ..+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~----------------------------------------------~~l 191 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELA----------------------------------------------KFL 191 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHH----------------------------------------------HHH
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHH----------------------------------------------HHH
Confidence 233443 677777777766533332221 111
Q ss_pred hhc-CcccEEecCCCcCCCc----CCccccC-CCCCcEEEcCCccCCCCCC----ccccCCCCCCEEEcCCCcCCCCC--
Q 048417 325 RTL-NLVRIIDFSKNNFSGK----IPLEVTN-LKVLQSVNLSNNFFTGRIP----ESVGTMRSLESIDFSLNQLSGEI-- 392 (453)
Q Consensus 325 ~~~-~~L~~L~l~~~~l~~~----~~~~~~~-~~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~-- 392 (453)
..+ ++|++|++++|.+++. ++..+.. .++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..
T Consensus 192 ~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~ 271 (362)
T 3goz_A 192 ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHH
T ss_pred HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHH
Confidence 223 3688888888888753 2333433 4578888888888875433 33466788888888888754332
Q ss_pred -----CccccCCCCCCEEEccCCccccc
Q 048417 393 -----PQSMSSLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 393 -----~~~l~~l~~L~~L~l~~n~l~~~ 415 (453)
++.+..+++|++|++++|++.+.
T Consensus 272 ~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 272 QCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 24566777888888888887754
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.7e-22 Score=190.54 Aligned_cols=254 Identities=17% Similarity=0.119 Sum_probs=135.8
Q ss_pred EEccCCcCCCCCCccccCCCcccEEEcCCCcccccchh---hHhhcCC-CeEEEEccCCcccCCC-cCccCC-----CCC
Q 048417 18 LGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPN---IFWSSAS-QIYVLDLSFNQIHGQI-PNLTNA-----AQL 87 (453)
Q Consensus 18 L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~-~L~~L~ls~~~~~~~~-~~l~~~-----~~L 87 (453)
++++++.+++..+..+...++|++|++++|.+.+..+. ..+..++ +|++|++++|.++... ..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34555555444444444444466666666555333331 1124444 5666666665555421 122221 556
Q ss_pred cEEEccCCccccccccc-------c-ccCcEEECcCCCCCCchhhhhhhhhccc-CcccEEeccCCCCCCCCc----hhh
Q 048417 88 EVLSLGSNSFSIALPLI-------S-SYLIELDFSNNSISGSIFHFICYRANEL-NKWQILYLSGNFLQGELP----DCW 154 (453)
Q Consensus 88 ~~L~l~~~~~~~~~~~~-------~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~l 154 (453)
++|++++|.+....... + ++|++|++++|.+.......+...+..+ ++|++|++++|.+++... ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 66666666555433221 1 4566666666666555555555544442 466666666666653322 222
Q ss_pred hcCC-cccEEEcccCccCCCCCcccc----cc-ccccEEEccCCcccc-----ccccccc-cCCCCEEeCCCCcccccCc
Q 048417 155 MNYQ-NLMILDLSNNKFTGNLPISLG----SL-ISLQSLHLRKNNLCG-----TIHSLEN-CTALMTLDVGENELVENIP 222 (453)
Q Consensus 155 ~~l~-~L~~L~l~~~~~~~~~~~~l~----~l-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~~~~~~~ 222 (453)
...+ +|++|++++|.+.+..+..+. .. ++|+.|++++|.+.. +...+.. .++|++|++++|.+.+...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3333 666666666666644443322 23 367777777776655 2233333 3477777777777755433
Q ss_pred hH---HHhccCcceEEEecCCcccccC-------chhhcCCCCccEEEccCCcCCCCcc
Q 048417 223 TW---IRERFSRIVVLILRSNKFYNLL-------PKELCDLAFLQIVDLADNNLSGEVP 271 (453)
Q Consensus 223 ~~---~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~~L~~L~l~~~~~~~~~~ 271 (453)
.. .+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+..+
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 22 2234567777777777643322 2345667788888888888775433
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.5e-20 Score=171.14 Aligned_cols=204 Identities=21% Similarity=0.167 Sum_probs=166.7
Q ss_pred hcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCE
Q 048417 130 ANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMT 209 (453)
Q Consensus 130 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 209 (453)
+..++++++++++++.++ .+|..+ .+.+++|++++|.+.+..+..|..+++|+.|++++|.++.+... ..+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 346788888999888887 566544 36888999999988877677788889999999999988776543 67889999
Q ss_pred EeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCc
Q 048417 210 LDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGK 289 (453)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~ 289 (453)
|++++|.+.. ++..+ ..+++|+.|++++|.+....+..|..+++|++|++++|.+.+..+..+.
T Consensus 82 L~Ls~N~l~~-l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------------- 145 (290)
T 1p9a_G 82 LDLSHNQLQS-LPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT-------------- 145 (290)
T ss_dssp EECCSSCCSS-CCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT--------------
T ss_pred EECCCCcCCc-Cchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc--------------
Confidence 9999998853 44433 4688999999999999887778899999999999999999844333332
Q ss_pred chhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCC
Q 048417 290 AIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIP 369 (453)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 369 (453)
.+++|+.|++++|+++...+..+..+++|+.|++++|++. .+|
T Consensus 146 ------------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 146 ------------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp ------------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred ------------------------------------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 3566899999999998666667788999999999999999 888
Q ss_pred ccccCCCCCCEEEcCCCcCCC
Q 048417 370 ESVGTMRSLESIDFSLNQLSG 390 (453)
Q Consensus 370 ~~l~~l~~L~~L~l~~n~l~~ 390 (453)
..+..+++|+.+++++|++..
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBCC
T ss_pred hhhcccccCCeEEeCCCCccC
Confidence 888888999999999998863
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=1.7e-21 Score=176.08 Aligned_cols=223 Identities=18% Similarity=0.151 Sum_probs=145.9
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVG 213 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 213 (453)
.++..+++.++.+... ..+..+.+|+.|+++++.+.. . ..+..+++|+.|++++|.+.+. ..+..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECT
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECC
Confidence 3444445555554422 224556667777777776652 2 2356666777777777766543 355566667777777
Q ss_pred CCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhh
Q 048417 214 ENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQY 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~ 293 (453)
+|.+.+ .+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 94 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------ 154 (272)
T 3rfs_A 94 GNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD------------------ 154 (272)
T ss_dssp TSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------------
T ss_pred CCccCc-cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc------------------
Confidence 666644 3333334566677777777766665555667777777777777777633332222
Q ss_pred hhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcccc
Q 048417 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVG 373 (453)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 373 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 155 --------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (272)
T 3rfs_A 155 --------------------------------KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202 (272)
T ss_dssp --------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred --------------------------------cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence 345567788888888766666677788888888888888866666678
Q ss_pred CCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 048417 374 TMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
.+++|++|++++|++... ++.|+.++++.|.++|.+|..
T Consensus 203 ~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 203 RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 888888888888877633 556888888888888877754
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.1e-22 Score=193.70 Aligned_cols=242 Identities=18% Similarity=0.135 Sum_probs=150.1
Q ss_pred CCccccCCCcccEEEcCCCcccccchhhH---hhcCCCeEEEEccCCcccCC----CcC-------ccCCCCCcEEEccC
Q 048417 29 FPSWLYSQKHLNYLDLSYSGIIGTIPNIF---WSSASQIYVLDLSFNQIHGQ----IPN-------LTNAAQLEVLSLGS 94 (453)
Q Consensus 29 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~ls~~~~~~~----~~~-------l~~~~~L~~L~l~~ 94 (453)
++.++..+++|++|++++|.+.+..+..+ +..+++|++|++++|.+... +.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44555666677777777776644433332 24566677777766544321 111 24566777777777
Q ss_pred Cccccc----cc---cccccCcEEECcCCCCCCchhhhhhhhhccc---------CcccEEeccCCCCC-CCCc---hhh
Q 048417 95 NSFSIA----LP---LISSYLIELDFSNNSISGSIFHFICYRANEL---------NKWQILYLSGNFLQ-GELP---DCW 154 (453)
Q Consensus 95 ~~~~~~----~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~---------~~L~~L~l~~~~~~-~~~~---~~l 154 (453)
|.+... .+ ..+++|++|++++|.+.......++..+..+ ++|++|++++|+++ ...+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 766652 11 1245677777777777655455555544444 77777777777776 2233 345
Q ss_pred hcCCcccEEEcccCccCC-----CCCccccccccccEEEccCCccc-----cccccccccCCCCEEeCCCCcccccCchH
Q 048417 155 MNYQNLMILDLSNNKFTG-----NLPISLGSLISLQSLHLRKNNLC-----GTIHSLENCTALMTLDVGENELVENIPTW 224 (453)
Q Consensus 155 ~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (453)
..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ .++..+..+++|+.|++++|.+.+.....
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 567777788887777652 22225667777888888888773 23355667778888888888775542222
Q ss_pred HHh-----ccCcceEEEecCCcccc----cCchhh-cCCCCccEEEccCCcCCCCc
Q 048417 225 IRE-----RFSRIVVLILRSNKFYN----LLPKEL-CDLAFLQIVDLADNNLSGEV 270 (453)
Q Consensus 225 ~~~-----~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~ 270 (453)
+.. .+++|+.|++++|.+.. .++..+ .++++|++|++++|.+.+..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 221 26778888888888766 355555 55788888888888887555
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5.9e-23 Score=195.59 Aligned_cols=92 Identities=13% Similarity=0.320 Sum_probs=65.4
Q ss_pred hhcCcccEEecCCCcCC----CcCCccccCCCCCcEEEcCCccCCCC----CCcccc--CCCCCCEEEcCCCcCCC----
Q 048417 325 RTLNLVRIIDFSKNNFS----GKIPLEVTNLKVLQSVNLSNNFFTGR----IPESVG--TMRSLESIDFSLNQLSG---- 390 (453)
Q Consensus 325 ~~~~~L~~L~l~~~~l~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~--~l~~L~~L~l~~n~l~~---- 390 (453)
..+++|+.|++++|.++ ..++..+..+++|+.|++++|.+.+. ++..+. .+++|++|++++|.+..
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 34566777888877774 34566677778888888888887654 344553 37888888888888875
Q ss_pred CCCccc-cCCCCCCEEEccCCcccccC
Q 048417 391 EIPQSM-SSLKFLNHLNLSNNNLTGKI 416 (453)
Q Consensus 391 ~~~~~l-~~l~~L~~L~l~~n~l~~~~ 416 (453)
.+|..+ ..+++|++|++++|++++..
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcch
Confidence 366655 55788888888888887654
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=176.67 Aligned_cols=233 Identities=16% Similarity=0.162 Sum_probs=151.6
Q ss_pred CcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhh--hcCCcccEEEcccCccCCCCC----cccccc
Q 048417 108 LIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCW--MNYQNLMILDLSNNKFTGNLP----ISLGSL 181 (453)
Q Consensus 108 L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~l~~l 181 (453)
++.+.+.++.+.......+...+ .+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVL-AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHH-HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred eeEEEEeCCcCCHHHHHHHHHhc-ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 44555555555433332222211 34568888888888776666666 677788888888887775433 223456
Q ss_pred ccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEE
Q 048417 182 ISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVD 260 (453)
Q Consensus 182 ~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 260 (453)
++|++|++++|.+.... ..+..+++|++|++++|.+.+... +. .+..+..+++|++|+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~-------------------~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG--LM-------------------AALCPHKFPAIQNLA 203 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH--HH-------------------TTSCTTSSCCCCSCB
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh--hh-------------------HHHhhhcCCCCCEEE
Confidence 67777777777776555 455666667777776666532100 00 112234567788888
Q ss_pred ccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcC
Q 048417 261 LADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNF 340 (453)
Q Consensus 261 l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 340 (453)
+++|.++ .++.... ..+..+++|++|++++|.+
T Consensus 204 Ls~N~l~-~l~~~~~----------------------------------------------~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 204 LRNTGME-TPTGVCA----------------------------------------------ALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp CCSSCCC-CHHHHHH----------------------------------------------HHHHHTCCCSSEECTTSCC
T ss_pred CCCCCCC-chHHHHH----------------------------------------------HHHhcCCCCCEEECCCCCC
Confidence 8888775 2221100 0113456788888888888
Q ss_pred CCcCCccccCC---CCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 341 SGKIPLEVTNL---KVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 341 ~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|+++.
T Consensus 237 ~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 237 RATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 86666666655 68999999999998 7776664 7899999999999843 43 6788999999999998874
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.9e-20 Score=169.17 Aligned_cols=217 Identities=17% Similarity=0.192 Sum_probs=166.5
Q ss_pred cccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEec
Q 048417 159 NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILR 238 (453)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 238 (453)
.+..+++..+.+.+. ..+..+++|+.|++.+|.+... ..+..+++|+.|++++|.+.+ .+ .+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECC
Confidence 444455666655533 2355678889999988887644 457778889999998888765 22 23467888888888
Q ss_pred CCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcC
Q 048417 239 SNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKG 318 (453)
Q Consensus 239 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (453)
+|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------------------------------- 130 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD------------------------------------------- 130 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-------------------------------------------
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc-------------------------------------------
Confidence 8888777766778888888888888888744333333
Q ss_pred CcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccC
Q 048417 319 REAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSS 398 (453)
Q Consensus 319 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 398 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..+..+..
T Consensus 131 -------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (272)
T 3rfs_A 131 -------KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203 (272)
T ss_dssp -------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred -------cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhC
Confidence 3556899999999998777777889999999999999999666677889999999999999999888888899
Q ss_pred CCCCCEEEccCCcccccCCCCcccceeecccCCCCCccC
Q 048417 399 LKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCR 437 (453)
Q Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~ 437 (453)
+++|++|++++|++.+..| .|+.+++++|.++|
T Consensus 204 l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 204 LTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSG 236 (272)
T ss_dssp CTTCCEEECCSSCBCCCTT------TTHHHHHHHHHTGG
T ss_pred CcCCCEEEccCCCccccCc------HHHHHHHHHHhCCC
Confidence 9999999999999987655 45555666555444
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=3.3e-20 Score=165.56 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=120.4
Q ss_pred ccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhh
Q 048417 228 RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIAT 307 (453)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~ 307 (453)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 57 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------------------------------- 104 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD-------------------------------- 104 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--------------------------------
T ss_pred CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc--------------------------------
Confidence 445555555555555555555667777888888888877633333332
Q ss_pred hhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCc
Q 048417 308 LLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 387 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 105 ------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 105 ------------------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp ------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 34567888898888886666678889999999999999996666678999999999999999
Q ss_pred CCCCCCccccCCCCCCEEEccCCcccccCCCCcccce------eecccCCCCCccCCCCCCCCCCC
Q 048417 388 LSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQS------FDASSFSGNDLCRAPLSGNCSEH 447 (453)
Q Consensus 388 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~------L~~l~l~~n~l~~~~~~~~c~~~ 447 (453)
+.+..+..+..+++|++|++++|++.+....+..++. ....+..++.+++.|....|..-
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG 232 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence 9977777899999999999999999876444433222 23345556667778888888665
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=3.7e-21 Score=179.66 Aligned_cols=150 Identities=20% Similarity=0.240 Sum_probs=99.3
Q ss_pred CcccEEeccCCCCCCCCchhhhcC--CcccEEEcccCccCCCCCccccccccccEEEccCCcccc--ccccccccCCCCE
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNY--QNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG--TIHSLENCTALMT 209 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~ 209 (453)
..++.++++++.+. +..+..+ ..++.++++++.+.+..+. +..+++|+.|++++|.+.. ....+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34778888887765 4555665 7888888888888755544 4567888888888887754 3355677788888
Q ss_pred EeCCCCcccccCchHHHhccCcceEEEecCC-ccccc-CchhhcCCCCccEEEccCC-cCCCC-ccccccccc-ccceec
Q 048417 210 LDVGENELVENIPTWIRERFSRIVVLILRSN-KFYNL-LPKELCDLAFLQIVDLADN-NLSGE-VPRCIHNLR-AMVTMN 284 (453)
Q Consensus 210 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~l~ 284 (453)
|++++|.+.+..+..+ ..+++|++|++++| .+.+. .+..+..+++|++|++++| .+++. ++..+..++ +|+.|+
T Consensus 123 L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 8888887655444444 34777778887777 45432 4445666777777777777 66532 344455555 555555
Q ss_pred cccC
Q 048417 285 SHAG 288 (453)
Q Consensus 285 i~~~ 288 (453)
++++
T Consensus 202 l~~~ 205 (336)
T 2ast_B 202 LSGY 205 (336)
T ss_dssp CCSC
T ss_pred eCCC
Confidence 5554
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.7e-21 Score=176.69 Aligned_cols=229 Identities=18% Similarity=0.204 Sum_probs=154.7
Q ss_pred CcccEEEcccCccCCCCCc---cccccccccEEEccCCcccccc-ccc--cccCCCCEEeCCCCcccccCch---HHHhc
Q 048417 158 QNLMILDLSNNKFTGNLPI---SLGSLISLQSLHLRKNNLCGTI-HSL--ENCTALMTLDVGENELVENIPT---WIRER 228 (453)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~-~~~--~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 228 (453)
..++.+.+.++.+...... .+..+++|++|++++|.+.+.. ..+ ..+++|++|++++|.+.+..+. ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466667766655421000 0122455777777777776544 333 6677777777777777553331 11124
Q ss_pred cCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhh
Q 048417 229 FSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATL 308 (453)
Q Consensus 229 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 308 (453)
+++|++|++++|.+....+..+..+++|++|++++|.+.+.. ...
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------------------~~~----------- 188 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER------------------------GLM----------- 188 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH------------------------HHH-----------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch------------------------hhh-----------
Confidence 566666666666666655566666666666666666654210 000
Q ss_pred hhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCc----cccCCCCCcEEEcCCccCCCCCCccccCC---CCCCEE
Q 048417 309 LEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPL----EVTNLKVLQSVNLSNNFFTGRIPESVGTM---RSLESI 381 (453)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L 381 (453)
.......+++|++|++++|+++. .+. .+..+++|++|++++|.+.+..|..+..+ ++|++|
T Consensus 189 -----------~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L 256 (310)
T 4glp_A 189 -----------AALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSL 256 (310)
T ss_dssp -----------TTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCE
T ss_pred -----------HHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEE
Confidence 00111346778999999999863 332 24678999999999999997778777666 799999
Q ss_pred EcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCCccC
Q 048417 382 DFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCR 437 (453)
Q Consensus 382 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~ 437 (453)
++++|+++ .+|..+. ++|++|++++|++++. |....+++|+.+++++|++++
T Consensus 257 ~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 257 NLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred ECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence 99999999 6777664 8999999999999964 556789999999999998765
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.2e-21 Score=181.21 Aligned_cols=231 Identities=18% Similarity=0.206 Sum_probs=157.9
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCC-CCccccccccccEEEccCCcccccc-ccccccCCCCEEe
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN-LPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALMTLD 211 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~ 211 (453)
++++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+.. ..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6777888888777755444 45678888888888877643 5556677788888888888776433 5566788888888
Q ss_pred CCCC-cccccCchHHHhccCcceEEEecCC-ccccc-CchhhcCCC-CccEEEccCCc--CC-CCcccccccccccceec
Q 048417 212 VGEN-ELVENIPTWIRERFSRIVVLILRSN-KFYNL-LPKELCDLA-FLQIVDLADNN--LS-GEVPRCIHNLRAMVTMN 284 (453)
Q Consensus 212 l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~l~ 284 (453)
+++| .+.+......+..+++|++|++++| .+.+. .+..+..++ +|++|++++|. ++ +.++.
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~------------ 216 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST------------ 216 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH------------
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH------------
Confidence 8888 4544323333456788888888888 77653 455677788 99999999884 33 11121
Q ss_pred cccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCc-CCCcCCccccCCCCCcEEEcCCcc
Q 048417 285 SHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNN-FSGKIPLEVTNLKVLQSVNLSNNF 363 (453)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~n~ 363 (453)
.+..+++|++|++++|. +++..+..+..+++|+.|++++|.
T Consensus 217 --------------------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 217 --------------------------------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp --------------------------------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred --------------------------------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 12346678888888887 665666677888888889888885
Q ss_pred -CCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCC-CCCEEEccCCcccccCCCC
Q 048417 364 -FTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLK-FLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 364 -~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~ 419 (453)
+.+.....+..+++|++|++++| +.. +.+..+. .++.|++++|++++..|..
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 32222235777888888888888 432 2333332 3566668888888776654
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2.5e-20 Score=165.12 Aligned_cols=198 Identities=17% Similarity=0.236 Sum_probs=124.5
Q ss_pred cccEEEccCCccccccc-cccccCCCCEEeCCCCc-ccccCchHHHhccCcceEEEecC-CcccccCchhhcCCCCccEE
Q 048417 183 SLQSLHLRKNNLCGTIH-SLENCTALMTLDVGENE-LVENIPTWIRERFSRIVVLILRS-NKFYNLLPKELCDLAFLQIV 259 (453)
Q Consensus 183 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 259 (453)
+++.|++++|.+++++. .+..+++|+.|++++|. +.. ++...+..+++|++|++++ |.+....+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 34444444444433332 33344444444444443 322 2222223455566666655 55555555567777888888
Q ss_pred EccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCC-
Q 048417 260 DLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKN- 338 (453)
Q Consensus 260 ~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~- 338 (453)
++++|.+. .+|. +..+++| ..|++|++++|
T Consensus 111 ~l~~n~l~-~lp~-~~~l~~L-----------------------------------------------~~L~~L~l~~N~ 141 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LTKVYST-----------------------------------------------DIFFILEITDNP 141 (239)
T ss_dssp EEEEECCC-SCCC-CTTCCBC-----------------------------------------------CSEEEEEEESCT
T ss_pred eCCCCCCc-cccc-ccccccc-----------------------------------------------ccccEEECCCCc
Confidence 88888776 3443 3333332 11348888888
Q ss_pred cCCCcCCccccCCCCCc-EEEcCCccCCCCCCc-cccCCCCCCEEEcCCCc-CCCCCCccccCC-CCCCEEEccCCcccc
Q 048417 339 NFSGKIPLEVTNLKVLQ-SVNLSNNFFTGRIPE-SVGTMRSLESIDFSLNQ-LSGEIPQSMSSL-KFLNHLNLSNNNLTG 414 (453)
Q Consensus 339 ~l~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~ 414 (453)
.+++..+..+..+++|+ .|++++|.+. .+|. .+.. ++|++|++++|+ +.+..+..|..+ ++|++|++++|++++
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred chhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 78766666788888888 8888888887 5543 4444 788899999885 776666778888 889999999888885
Q ss_pred cCCCCcccceeecccCCCCC
Q 048417 415 KIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 415 ~~~~~~~l~~L~~l~l~~n~ 434 (453)
+|.. .+++|+.+++++++
T Consensus 220 -l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 220 -LPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp -CCCT-TCTTCSEEECTTC-
T ss_pred -CChh-HhccCceeeccCcc
Confidence 4443 67788888887764
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=7.4e-20 Score=168.24 Aligned_cols=210 Identities=19% Similarity=0.272 Sum_probs=164.1
Q ss_pred EEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcc
Q 048417 138 ILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENEL 217 (453)
Q Consensus 138 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 217 (453)
.+.+..+.+++.. ....+++|++|+++++.+.. .+ .+..+++|+.|++++|.+..... +..+++|+.|++++|.+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence 3345555555322 25668899999999998884 44 57888999999999999887766 88889999999999988
Q ss_pred cccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhh
Q 048417 218 VENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLL 297 (453)
Q Consensus 218 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~ 297 (453)
.+ .+ .+..+++|++|++++|.+.+.. .+..+++|++|++++|.+.+ ++. +
T Consensus 98 ~~-~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~-~~~-l----------------------- 147 (308)
T 1h6u_A 98 KN-VS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITN-ISP-L----------------------- 147 (308)
T ss_dssp SC-CG--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-G-----------------------
T ss_pred CC-ch--hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCc-Ccc-c-----------------------
Confidence 65 33 2346788888888888886642 37788888888888888763 221 1
Q ss_pred hhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCC
Q 048417 298 YASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRS 377 (453)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 377 (453)
..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+ ++. +..+++
T Consensus 148 ---------------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~ 196 (308)
T 1h6u_A 148 ---------------------------AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD-ISP-LASLPN 196 (308)
T ss_dssp ---------------------------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GGGCTT
T ss_pred ---------------------------cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc-Chh-hcCCCC
Confidence 346678999999999985433 8889999999999999984 443 888999
Q ss_pred CCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 048417 378 LESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 378 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 415 (453)
|++|++++|++.+.. .+..+++|++|++++|++++.
T Consensus 197 L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 197 LIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred CCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 999999999998544 388999999999999999863
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=2.3e-19 Score=160.01 Aligned_cols=176 Identities=19% Similarity=0.199 Sum_probs=141.2
Q ss_pred CCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceecc
Q 048417 206 ALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNS 285 (453)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i 285 (453)
..+.++++++.+.. +|..+ .+.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------- 80 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD---------- 80 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT----------
T ss_pred CCeEEecCCCCccc-cCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc----------
Confidence 44556666665533 33322 24677777777777777777788889999999999988754444343
Q ss_pred ccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCC
Q 048417 286 HAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFT 365 (453)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 365 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 81 ----------------------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 81 ----------------------------------------DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp ----------------------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ----------------------------------------cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC
Confidence 3556799999999999777778899999999999999999
Q ss_pred CCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCC-CcccceeecccCCCCCc
Q 048417 366 GRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPS-STQLQSFDASSFSGNDL 435 (453)
Q Consensus 366 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~n~l 435 (453)
+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|++++..+. ...+++|+.+++++|++
T Consensus 121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 66666788999999999999999977777899999999999999999976664 47899999999999964
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=5.7e-19 Score=162.30 Aligned_cols=192 Identities=19% Similarity=0.228 Sum_probs=106.8
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEE
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLS 91 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~ 91 (453)
+++|++|++++|.++. .+ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++.. +.+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~--~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh--HccCCCCCEEEccCCcCCCc-hhhcCCCCCCEEE
Confidence 4555555555555533 22 35555555555555555533 222 25555555555555555543 2344455555555
Q ss_pred ccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccC
Q 048417 92 LGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 92 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
+++|.+.... .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.
T Consensus 114 l~~n~l~~~~---------------------------~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 114 LTSTQITDVT---------------------------PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CTTSCCCCCG---------------------------GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred CCCCCCCCch---------------------------hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC
Confidence 5555444321 133466666666666666632 22 566666666666666666
Q ss_pred CCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccc
Q 048417 172 GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYN 244 (453)
Q Consensus 172 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 244 (453)
+. +. +..+++|+.|++++|.+++... +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++..
T Consensus 165 ~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DL-TP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEEC
T ss_pred CC-hh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeec
Confidence 32 22 5666666667766666655443 5566667777777776654332 3456677777777776644
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=9.4e-19 Score=154.90 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=48.0
Q ss_pred Cccc-EEecCCCcCCCcCCccccCCCCCcEEEcCCcc-CCCCCCccccCC-CCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 048417 328 NLVR-IIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNF-FTGRIPESVGTM-RSLESIDFSLNQLSGEIPQSMSSLKFLNH 404 (453)
Q Consensus 328 ~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 404 (453)
++|+ +|++++|+++...+..+.. ++|+.|++++|+ +.+..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~ 230 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKE 230 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSE
T ss_pred hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCce
Confidence 3455 6666666665222333333 667777777774 664445566667 77777777777776 33333 5667777
Q ss_pred EEccCC
Q 048417 405 LNLSNN 410 (453)
Q Consensus 405 L~l~~n 410 (453)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 777665
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.9e-18 Score=162.01 Aligned_cols=85 Identities=15% Similarity=0.104 Sum_probs=41.4
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCC-ccccccccccE-EEccCCcccccc-ccccccCCCCEE
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLP-ISLGSLISLQS-LHLRKNNLCGTI-HSLENCTALMTL 210 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~-L~l~~~~~~~~~-~~~~~~~~L~~L 210 (453)
+++++|++++|+++...+..|.++++|++|++++|.+.+.++ ..|..++++.. +.+.+|+++.+. ..+..+++|+.|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 345555555555553222345555555555555555433222 23445555443 333445554443 344555555555
Q ss_pred eCCCCccc
Q 048417 211 DVGENELV 218 (453)
Q Consensus 211 ~l~~~~~~ 218 (453)
++++|.+.
T Consensus 110 ~l~~n~l~ 117 (350)
T 4ay9_X 110 LISNTGIK 117 (350)
T ss_dssp EEEEECCS
T ss_pred cccccccc
Confidence 55555553
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=2.1e-17 Score=154.84 Aligned_cols=241 Identities=15% Similarity=0.153 Sum_probs=139.1
Q ss_pred cEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc--ccccccCCCCEEeCCC
Q 048417 137 QILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI--HSLENCTALMTLDVGE 214 (453)
Q Consensus 137 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~ 214 (453)
++++.++++++ .+|..+ ..++++|++++|.++...+..|.++++|++|++++|.+.+.. ..+.++++++.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~---- 84 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI---- 84 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE----
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh----
Confidence 45566666666 455433 345666666666666443345666666666666666654322 234444444432
Q ss_pred CcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcc-hhh
Q 048417 215 NELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKA-IQY 293 (453)
Q Consensus 215 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~-~~~ 293 (453)
+.+.+|.+....+..|..+++|++|++++|++....+..+....++..+++..+.. ...
T Consensus 85 --------------------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 85 --------------------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp --------------------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred --------------------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 22233333333344444444455555554444432223333333333333332111 000
Q ss_pred hhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCC-ccCCCCCC-cc
Q 048417 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSN-NFFTGRIP-ES 371 (453)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~-~~ 371 (453)
... .+......++.|++++|+++. ++......++|++|++.+ |.+. .+| ..
T Consensus 145 ~~~-------------------------~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~ 197 (350)
T 4ay9_X 145 ERN-------------------------SFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDV 197 (350)
T ss_dssp CTT-------------------------SSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTT
T ss_pred ccc-------------------------chhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCccc-CCCHHH
Confidence 000 000112458899999999984 444444567899999986 5555 666 57
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCC
Q 048417 372 VGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 372 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~ 434 (453)
|..+++|++||+++|+++...+.. +.+|+.|.+.++.-...+|.+..+++|+.+++.++.
T Consensus 198 f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 198 FHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred hccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 899999999999999999444334 556777777666544478888899999999997654
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=5.8e-17 Score=159.82 Aligned_cols=184 Identities=21% Similarity=0.280 Sum_probs=137.8
Q ss_pred cccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEcc
Q 048417 14 QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLG 93 (453)
Q Consensus 14 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~ 93 (453)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.++..+. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 78899999998866 55544 378999999999884 677 346889999999998887655 444 89999999
Q ss_pred CCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCC
Q 048417 94 SNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGN 173 (453)
Q Consensus 94 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 173 (453)
+|.+++... .+++|++|++++|.++.... .+++|++|++++|.+++ +|. +. ++|++|++++|.++ .
T Consensus 129 ~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTMLPE-LPALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSCCCC-CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCCCCC-cCccccEEeCCCCccCcCCC--------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 998887555 67788888888888774221 36788888888888884 565 54 78888888888888 5
Q ss_pred CCccccccccc-------cEEEccCCccccccccccccCCCCEEeCCCCcccccCchHH
Q 048417 174 LPISLGSLISL-------QSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWI 225 (453)
Q Consensus 174 ~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 225 (453)
+|. +.. +| +.|++++|.++.++..+..+++|+.|++++|.+.+..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 555 443 56 88888888888777666668888888888888776555544
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2e-17 Score=150.61 Aligned_cols=189 Identities=15% Similarity=0.240 Sum_probs=133.9
Q ss_pred ccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccC
Q 048417 184 LQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD 263 (453)
Q Consensus 184 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 263 (453)
+..+.+..+.+... .....+++|+.|++++|.+... +. +..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~-~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSE-ECHHHHHTCCEEECTTSCCCCC-TT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccc-cchhhcCcccEEEccCCCcccC-hh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 33444454444432 2345678899999999988653 32 3568999999999999877544 88899999999999
Q ss_pred CcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCc
Q 048417 264 NNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK 343 (453)
Q Consensus 264 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 343 (453)
|.+.+ ++ .+..+++|+.|+++++.+.... .+..+++|+.|++++|.+++.
T Consensus 100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~----------------------------~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 100 NKVKD-LS-SLKDLKKLKSLSLEHNGISDIN----------------------------GLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp SCCCC-GG-GGTTCTTCCEEECTTSCCCCCG----------------------------GGGGCTTCCEEECCSSCCCCC
T ss_pred CcCCC-Ch-hhccCCCCCEEECCCCcCCCCh----------------------------hhcCCCCCCEEEccCCcCCcc
Confidence 99873 43 3777788888887777644321 123467788888888877643
Q ss_pred CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 344 IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
..+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+.+ ++ .+..+++|+.|++++|+++.
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred --hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 4566777888888888877743 33 7777788888888887773 33 37777788888888887764
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=8.1e-17 Score=139.16 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=58.7
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 406 (453)
+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.. .++.|++|+
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~ 171 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLS 171 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHH
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHH
Confidence 4446677777777765555556677777777777777775444556777777777777776553 345677777
Q ss_pred ccCCcccccCCCC
Q 048417 407 LSNNNLTGKIPSS 419 (453)
Q Consensus 407 l~~n~l~~~~~~~ 419 (453)
++.|++++.+|..
T Consensus 172 ~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 172 EWINKHSGVVRNS 184 (208)
T ss_dssp HHHHHCTTTBBCT
T ss_pred HHHHhCCceeecc
Confidence 7777777766643
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1.6e-16 Score=144.69 Aligned_cols=170 Identities=21% Similarity=0.222 Sum_probs=91.9
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEE
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLS 91 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~ 91 (453)
+++|++|++++|.++.. ..+..+++|++|++++|++++..+ +..+++|++|++++|.++.. +.+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCC-hhhccCCCCCEEE
Confidence 44555555555555332 224555555555555555533222 24555555555555555442 2244445555555
Q ss_pred ccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccC
Q 048417 92 LGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 92 l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
+++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 119 L~~n~i~~~---------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 119 LEHNGISDI---------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CTTSCCCCC---------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCCCcCCCC---------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 555544422 1223466666666666666633 34566666666666666666
Q ss_pred CCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccc
Q 048417 172 GNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVE 219 (453)
Q Consensus 172 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 219 (453)
+..+ +..+++|+.|++++|.++.+. .+..+++|+.|++++|.+..
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccC
Confidence 4322 566666666666666665543 35666667777776666543
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.9e-17 Score=141.79 Aligned_cols=153 Identities=12% Similarity=0.174 Sum_probs=116.2
Q ss_pred ccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhh
Q 048417 228 RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIAT 307 (453)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~ 307 (453)
.+++|+.|++++|.+.. ++ .+..+++|++|++++|.+. .+ ..
T Consensus 42 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~-~~---------------------------------- 83 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NY-NP---------------------------------- 83 (197)
T ss_dssp HHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CC-GG----------------------------------
T ss_pred hcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cc-hh----------------------------------
Confidence 45667777777777653 33 4666777777777777543 11 11
Q ss_pred hhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCc
Q 048417 308 LLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQ 387 (453)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 387 (453)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.
T Consensus 84 ----------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 84 ----------------ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp ----------------GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ----------------hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 2346678999999999887677888889999999999999987677888899999999999998
Q ss_pred -CCCCCCccccCCCCCCEEEccCCcccccCCCCcccceeecccCCCCCccC
Q 048417 388 -LSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQLQSFDASSFSGNDLCR 437 (453)
Q Consensus 388 -l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~n~l~~ 437 (453)
+. .++ .+..+++|++|++++|++++ ++.+..+++|+.+++++|++.+
T Consensus 148 ~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 148 AIT-DIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BCC-CCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC----
T ss_pred Ccc-ccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcccCC
Confidence 55 555 68889999999999999985 5677889999999999997654
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=7.4e-17 Score=140.46 Aligned_cols=137 Identities=20% Similarity=0.181 Sum_probs=102.6
Q ss_pred cceEEEecCCcccccCc-hhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhh
Q 048417 231 RIVVLILRSNKFYNLLP-KELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLL 309 (453)
Q Consensus 231 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 309 (453)
.++.|++++|.+....+ ..+..+++|++|++++|.+.+..+..+.
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~---------------------------------- 78 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE---------------------------------- 78 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT----------------------------------
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC----------------------------------
Confidence 34556666665555432 3466677777777777777633332332
Q ss_pred hhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 310 EDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 79 ----------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 79 ----------------GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp ----------------TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred ----------------CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 3455788888888888677777888899999999999998777888888999999999999998
Q ss_pred CCCCccccCCCCCCEEEccCCcccccCC
Q 048417 390 GEIPQSMSSLKFLNHLNLSNNNLTGKIP 417 (453)
Q Consensus 390 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 417 (453)
+..|..+..+++|++|++++|++.+..+
T Consensus 143 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 143 TVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred EECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7778888999999999999999886543
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=2.1e-16 Score=155.94 Aligned_cols=81 Identities=20% Similarity=0.365 Sum_probs=54.4
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCC-------CEEEcCCCcCCCCCCccccCCC
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSL-------ESIDFSLNQLSGEIPQSMSSLK 400 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~ 400 (453)
++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..++
T Consensus 160 ~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~ 230 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD 230 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence 446777777777764 444 44 77777777777777 5555 433 56 77888888777 5666666677
Q ss_pred CCCEEEccCCcccccCC
Q 048417 401 FLNHLNLSNNNLTGKIP 417 (453)
Q Consensus 401 ~L~~L~l~~n~l~~~~~ 417 (453)
+|+.|++++|++++.+|
T Consensus 231 ~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIR 247 (571)
T ss_dssp TTEEEECCSSSCCHHHH
T ss_pred CCCEEEeeCCcCCCcCH
Confidence 88888888887776544
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1.4e-16 Score=138.71 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=115.9
Q ss_pred CEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceecccc
Q 048417 208 MTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHA 287 (453)
Q Consensus 208 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~ 287 (453)
+.++++++.+.. +|..+ .+.++.|++++|.+....+..+..+++|++|++++|.+.+..|..+..
T Consensus 14 ~~v~c~~~~l~~-iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~----------- 78 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG----------- 78 (220)
T ss_dssp TEEECTTSCCSS-CCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEEEcCCCCcCc-CCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-----------
Confidence 567777776643 44432 257788888888887766667777888888888888777444444433
Q ss_pred CcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCC
Q 048417 288 GKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGR 367 (453)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 367 (453)
+++|++|++++|.++...+..+..+++|+.|++++|.+.+.
T Consensus 79 ---------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 79 ---------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp ---------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ---------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEe
Confidence 45578888888888865566677888888888888888877
Q ss_pred CCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 368 IPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 368 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
.+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++..
T Consensus 120 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77788888888888888888887777778888888888888888874
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.4e-16 Score=137.67 Aligned_cols=163 Identities=23% Similarity=0.244 Sum_probs=107.3
Q ss_pred cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccc
Q 048417 105 SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184 (453)
Q Consensus 105 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 184 (453)
.+++++|++++|.+...... .+..+++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence 34444555555544432221 22346777777777777775444556677777777777777775555556777777
Q ss_pred cEEEccCCccccccc-cccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccC
Q 048417 185 QSLHLRKNNLCGTIH-SLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD 263 (453)
Q Consensus 185 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 263 (453)
++|++++|.++.... .+..+++|+.|++++|.+.+ .+...+..+++|++|++++|++.. .++.|++|+++.
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~ 174 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWI 174 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHH
Confidence 777777777776653 35677777888887777754 343434567778888888776543 356778888888
Q ss_pred CcCCCCcccccccccc
Q 048417 264 NNLSGEVPRCIHNLRA 279 (453)
Q Consensus 264 ~~~~~~~~~~~~~~~~ 279 (453)
|.+.+.+|..+..++.
T Consensus 175 n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 175 NKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHCTTTBBCTTSSBCT
T ss_pred HhCCceeeccCccccC
Confidence 8888888877776654
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=1.8e-16 Score=139.05 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=122.0
Q ss_pred CCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceecc
Q 048417 206 ALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNS 285 (453)
Q Consensus 206 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i 285 (453)
+.+.++.+++.+.. +|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+
T Consensus 20 s~~~v~c~~~~l~~-ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~----------- 84 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS-VPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF----------- 84 (229)
T ss_dssp ETTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----------
T ss_pred eCCEeEccCCCcCc-cCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc-----------
Confidence 35667777776633 44432 3678888888888877777778888888888888888763222222
Q ss_pred ccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCC
Q 048417 286 HAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFT 365 (453)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 365 (453)
..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 85 ---------------------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 85 ---------------------------------------DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp ---------------------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ---------------------------------------ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc
Confidence 23566788999999988666677788999999999999998
Q ss_pred CCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 048417 366 GRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS 419 (453)
Q Consensus 366 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 419 (453)
.+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..+.+
T Consensus 126 -~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 126 -ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp -SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred -ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 78888888999999999999998666677888999999999999988665533
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=1.6e-16 Score=158.36 Aligned_cols=191 Identities=19% Similarity=0.248 Sum_probs=108.6
Q ss_pred CcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCC
Q 048417 134 NKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVG 213 (453)
Q Consensus 134 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 213 (453)
..+..+.+..+.+.+..+ +..+..|+.|++++|.+.. ++ .+..+++|+.|++++|.+.++.. +..+++|+.|+++
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 334445555555553322 4556677777777777663 22 35666666666666666655443 5555555555555
Q ss_pred CCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhh
Q 048417 214 ENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQY 293 (453)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~ 293 (453)
+|.+.+ . ..+..+++|+.|++++|.+.+ ++ .+
T Consensus 96 ~N~l~~-------------------------l--~~l~~l~~L~~L~Ls~N~l~~-l~-~l------------------- 127 (605)
T 1m9s_A 96 ENKIKD-------------------------L--SSLKDLKKLKSLSLEHNGISD-IN-GL------------------- 127 (605)
T ss_dssp SSCCCC-------------------------C--TTSTTCTTCCEEECTTSCCCC-CG-GG-------------------
T ss_pred CCCCCC-------------------------C--hhhccCCCCCEEEecCCCCCC-Cc-cc-------------------
Confidence 555432 1 134555666666666666552 11 11
Q ss_pred hhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCcccc
Q 048417 294 QFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVG 373 (453)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 373 (453)
..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..| +.
T Consensus 128 -------------------------------~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~ 172 (605)
T 1m9s_A 128 -------------------------------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 172 (605)
T ss_dssp -------------------------------GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT
T ss_pred -------------------------------cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc
Confidence 2244456666666666533 345566666666666666664333 66
Q ss_pred CCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 374 TMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
.+++|++|+|++|++.+. ..+..+++|+.|++++|++.+
T Consensus 173 ~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 666666666666666632 346666666666666666664
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=3.3e-16 Score=136.33 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=78.5
Q ss_pred EEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCc
Q 048417 186 SLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNN 265 (453)
Q Consensus 186 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 265 (453)
.++.+++.++.++..+. ++++.|++++|.+.. ++...+..+++|+.|++++|.+....+..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 45555555554443332 455666666655543 222223345556666666665555555555555666666666665
Q ss_pred CCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCC
Q 048417 266 LSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIP 345 (453)
Q Consensus 266 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 345 (453)
+....+..+. .+++|++|++++|.+++..+
T Consensus 92 l~~l~~~~f~--------------------------------------------------~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 92 ITELPKSLFE--------------------------------------------------GLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp CCCCCTTTTT--------------------------------------------------TCTTCCEEECCSSCCCCCCT
T ss_pred CCccCHhHcc--------------------------------------------------CCCCCCEEECCCCCCCEeCH
Confidence 5521111111 23345555555555555555
Q ss_pred ccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 346 LEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 346 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 122 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555566666666666655444444555566666666666554
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=6.9e-17 Score=151.94 Aligned_cols=84 Identities=26% Similarity=0.281 Sum_probs=37.2
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccc---cCCCCCCEEE
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSM---SSLKFLNHLN 406 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~ 406 (453)
|++|++++|.++...+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|++....+..+ ..+++|+.|+
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 3444444444443333344444445555555554443334444444455555555554442222222 2344455555
Q ss_pred ccCCccc
Q 048417 407 LSNNNLT 413 (453)
Q Consensus 407 l~~n~l~ 413 (453)
+++|+++
T Consensus 170 L~~N~l~ 176 (361)
T 2xot_A 170 LSSNKLK 176 (361)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 5555444
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.8e-16 Score=158.08 Aligned_cols=195 Identities=19% Similarity=0.337 Sum_probs=150.6
Q ss_pred cccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEcc
Q 048417 183 SLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLA 262 (453)
Q Consensus 183 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 262 (453)
.+..+.+..+.+.... .+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 22 ~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~-l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKS-VQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCC-CTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCC-ChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 3444555555544332 24567788888888887754 332 3467888888888888766544 7778888888888
Q ss_pred CCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCC
Q 048417 263 DNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSG 342 (453)
Q Consensus 263 ~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 342 (453)
+|.+.+ ++ . +..+++|+.|++++|.+.+
T Consensus 96 ~N~l~~-l~-~--------------------------------------------------l~~l~~L~~L~Ls~N~l~~ 123 (605)
T 1m9s_A 96 ENKIKD-LS-S--------------------------------------------------LKDLKKLKSLSLEHNGISD 123 (605)
T ss_dssp SSCCCC-CT-T--------------------------------------------------STTCTTCCEEECTTSCCCC
T ss_pred CCCCCC-Ch-h--------------------------------------------------hccCCCCCEEEecCCCCCC
Confidence 887762 22 1 1346778999999999974
Q ss_pred cCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccc
Q 048417 343 KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSSTQL 422 (453)
Q Consensus 343 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l 422 (453)
+ ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++++ ++.+..+
T Consensus 124 -l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l 196 (605)
T 1m9s_A 124 -I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGL 196 (605)
T ss_dssp -C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTC
T ss_pred -C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHccC
Confidence 3 4588899999999999999854 678999999999999999996655 8999999999999999996 5778899
Q ss_pred ceeecccCCCCCccCCCCCC
Q 048417 423 QSFDASSFSGNDLCRAPLSG 442 (453)
Q Consensus 423 ~~L~~l~l~~n~l~~~~~~~ 442 (453)
++|+.|++++|++++.|...
T Consensus 197 ~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 197 KNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp TTCSEEECCSEEEECCCCCC
T ss_pred CCCCEEEccCCcCcCCcccc
Confidence 99999999999988877654
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=5.3e-16 Score=135.99 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=53.8
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
|++|++++|+++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++. .+|..+..+++|++|++++
T Consensus 66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCC
Confidence 455555555554333344455555555555555555333344455555555555555555 4455555555555555555
Q ss_pred CcccccCCC-CcccceeecccCCCC
Q 048417 410 NNLTGKIPS-STQLQSFDASSFSGN 433 (453)
Q Consensus 410 n~l~~~~~~-~~~l~~L~~l~l~~n 433 (453)
|++++..+. ...+++|+.+++++|
T Consensus 145 N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 145 NQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 555543332 244555555555555
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.8e-16 Score=141.93 Aligned_cols=171 Identities=20% Similarity=0.181 Sum_probs=119.2
Q ss_pred CCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEE
Q 048417 11 PPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVL 90 (453)
Q Consensus 11 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L 90 (453)
++.++..++++.+.+++.. .+.++++|++|++++|.+ +.++ .+ ..+++|++|++++|+++..++ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i-~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNI-QSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCC-CCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCc-ccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEE
Confidence 3556777788888875532 577888899999998888 4555 33 778889999999988887666 7888888888
Q ss_pred EccCCccccccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCcc
Q 048417 91 SLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKF 170 (453)
Q Consensus 91 ~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 170 (453)
++++|.+........++|++|++++|.+... ..+..+++|++|++++|++++ .+ .+..+++|++|++++|.+
T Consensus 91 ~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPSACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp ECCSSCCSCCTTCCCSSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCC
T ss_pred ECCCCccCCcCccccCcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcC
Confidence 8888888764433336677777777766642 124457777777777777763 33 466677777777777777
Q ss_pred CCCCCccccccccccEEEccCCccccc
Q 048417 171 TGNLPISLGSLISLQSLHLRKNNLCGT 197 (453)
Q Consensus 171 ~~~~~~~l~~l~~L~~L~l~~~~~~~~ 197 (453)
.+. ..+..+++|+.|++++|.+...
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 644 4456666677777766666543
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=1.6e-15 Score=132.00 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=104.5
Q ss_pred cEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCC
Q 048417 161 MILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSN 240 (453)
Q Consensus 161 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 240 (453)
++++++++.++ .+|..+. ..++.|++++|.+++. .+...+..+++|+.|++++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~-----------------------~~~~~~~~l~~L~~L~L~~N 67 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVL-----------------------EATGIFKKLPQLRKINFSNN 67 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEE-----------------------CCCCCGGGCTTCCEEECCSS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCcc-----------------------CchhhhccCCCCCEEECCCC
Confidence 45666666665 3443332 2345555555555443 22222334555556666666
Q ss_pred cccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCc
Q 048417 241 KFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGRE 320 (453)
Q Consensus 241 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (453)
.+.+..+..|..+++|++|++++|.+.+..+..+.
T Consensus 68 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------------------------------------- 102 (220)
T 2v70_A 68 KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK--------------------------------------------- 102 (220)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT---------------------------------------------
T ss_pred cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhc---------------------------------------------
Confidence 55555556677788888888888888744443333
Q ss_pred chhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCC
Q 048417 321 AKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE 391 (453)
Q Consensus 321 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 391 (453)
.+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++...
T Consensus 103 -----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 103 -----GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp -----TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred -----CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 345578888888888877778888889999999999999877788888899999999999988743
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=2e-16 Score=146.92 Aligned_cols=219 Identities=12% Similarity=0.013 Sum_probs=117.9
Q ss_pred cCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcc----cccc-ccccccCCC
Q 048417 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNL----CGTI-HSLENCTAL 207 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~----~~~~-~~~~~~~~L 207 (453)
+++|+.+++.+ .++...+..|..+.+|+.+++.++.+....+..|..+.++..+....... ..+. ..+..+..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888887 66655556688888888888888877766666777777676666554221 1111 234445555
Q ss_pred C-EEeCCCCcccccCchHHHhc---cCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccccccccee
Q 048417 208 M-TLDVGENELVENIPTWIRER---FSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTM 283 (453)
Q Consensus 208 ~-~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 283 (453)
+ .+.+.... ..+..++.. ..++..+.+.+.-...........+++|+.+++.+|.+......+|
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF--------- 246 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF--------- 246 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT---------
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh---------
Confidence 5 34443221 122222211 2334444443331111111111125566666666655542111222
Q ss_pred ccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCc-EEEcCCc
Q 048417 284 NSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQ-SVNLSNN 362 (453)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~-~L~l~~n 362 (453)
..+++|+++++.++ +..+...+|..+++|+ .+++.+
T Consensus 247 -----------------------------------------~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 247 -----------------------------------------AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp -----------------------------------------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred -----------------------------------------hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 22344555666554 4444555666666666 666665
Q ss_pred cCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 363 FFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 363 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
.+....+.+|.+|++|+.+++++|.+....+..|.++++|+.|+.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 454334466666666666666666666555556666666666653
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=5.4e-16 Score=145.81 Aligned_cols=176 Identities=24% Similarity=0.209 Sum_probs=104.3
Q ss_pred ccEEEcccCccCCCCCccccccccccEEEccCCccccccc-ccc-ccCCCCEEeCCCCcccccCchHHHhccCcceEEEe
Q 048417 160 LMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIH-SLE-NCTALMTLDVGENELVENIPTWIRERFSRIVVLIL 237 (453)
Q Consensus 160 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 237 (453)
-++++.+++.+. .+|..+. ..++.|++++|.++++.. .+. .+++|+.|++++|.+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-------------------- 76 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-------------------- 76 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC--------------------
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC--------------------
Confidence 356777777666 4454332 346666666666655442 232 445555555554444
Q ss_pred cCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhc
Q 048417 238 RSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMK 317 (453)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (453)
....+..|..+++|++|++++|.+....+..+.
T Consensus 77 -----~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------------------ 109 (361)
T 2xot_A 77 -----NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS------------------------------------------ 109 (361)
T ss_dssp -----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTT------------------------------------------
T ss_pred -----CccChhhccCCCCCCEEECCCCcCCcCCHHHhC------------------------------------------
Confidence 444444556666666666666666522222222
Q ss_pred CCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccc---cCCCCCCEEEcCCCcCCCCCCc
Q 048417 318 GREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESV---GTMRSLESIDFSLNQLSGEIPQ 394 (453)
Q Consensus 318 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~~~~~~ 394 (453)
.+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|++....+.
T Consensus 110 --------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 110 --------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp --------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred --------CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 24456677777777765666677777777777777777773322333 4577788888888877755445
Q ss_pred cccCCCC--CCEEEccCCccc
Q 048417 395 SMSSLKF--LNHLNLSNNNLT 413 (453)
Q Consensus 395 ~l~~l~~--L~~L~l~~n~l~ 413 (453)
.+..++. ++.|++++|++.
T Consensus 182 ~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHSCHHHHTTEECCSSCEE
T ss_pred HhhhccHhhcceEEecCCCcc
Confidence 6666665 377788877775
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1.4e-15 Score=136.09 Aligned_cols=169 Identities=18% Similarity=0.287 Sum_probs=102.7
Q ss_pred ccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEc
Q 048417 182 ISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDL 261 (453)
Q Consensus 182 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 261 (453)
.++..++++++.++++. .+..+++|+.|++++|.+.. ++ . +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34444445555444333 34445555555555555533 22 1 2345566666666666554333 666677777777
Q ss_pred cCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCC
Q 048417 262 ADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFS 341 (453)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 341 (453)
++|.+.+ ++... . ++|+.|++++|+++
T Consensus 93 ~~N~l~~-l~~~~---------------------------------------------------~-~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 93 NRNRLKN-LNGIP---------------------------------------------------S-ACLSRLFLDNNELR 119 (263)
T ss_dssp CSSCCSC-CTTCC---------------------------------------------------C-SSCCEEECCSSCCS
T ss_pred CCCccCC-cCccc---------------------------------------------------c-CcccEEEccCCccC
Confidence 7776652 22110 0 34677777777776
Q ss_pred CcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 048417 342 GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGK 415 (453)
Q Consensus 342 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 415 (453)
+. ..+..+++|+.|++++|++.+ ++ .+..+++|++|++++|++.+. ..+..+++|+.|++++|++++.
T Consensus 120 ~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 120 DT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 42 246677788888888887774 33 577778888888888877744 5677778888888888877754
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.4e-15 Score=130.12 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=34.0
Q ss_pred cCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCc-cCCCCCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 133 LNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNK-FTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
+++|++|++++|.+++..+..+..+++|++|++++|. +. ..+ .+..+++|+.|++++|.++... .+..+++|+.|+
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLY 187 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEE
Confidence 4444444444444443333444444444444444444 33 222 2344444444444444443322 333344444444
Q ss_pred CCCCc
Q 048417 212 VGENE 216 (453)
Q Consensus 212 l~~~~ 216 (453)
+++|.
T Consensus 188 l~~N~ 192 (197)
T 4ezg_A 188 AFSQT 192 (197)
T ss_dssp ECBC-
T ss_pred eeCcc
Confidence 44443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=5.9e-17 Score=160.58 Aligned_cols=86 Identities=26% Similarity=0.351 Sum_probs=43.1
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCC-CccccCCCCCCEEEc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEI-PQSMSSLKFLNHLNL 407 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l 407 (453)
+|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .++.+++|+.|++++|++.+.. |..+..+++|+.|++
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 3455555555554 444445555555555555555542 33 4455555555555555555333 455555555555555
Q ss_pred cCCcccccCC
Q 048417 408 SNNNLTGKIP 417 (453)
Q Consensus 408 ~~n~l~~~~~ 417 (453)
++|++++.++
T Consensus 541 ~~N~l~~~~~ 550 (567)
T 1dce_A 541 QGNSLCQEEG 550 (567)
T ss_dssp TTSGGGGSSS
T ss_pred cCCcCCCCcc
Confidence 5555554433
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=7e-15 Score=125.02 Aligned_cols=105 Identities=26% Similarity=0.324 Sum_probs=64.4
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
+|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++....+..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3566666666665 445556666666666666666664444556666666666666666665555566666666666666
Q ss_pred CCcccccCCC-CcccceeecccCCCCC
Q 048417 409 NNNLTGKIPS-STQLQSFDASSFSGND 434 (453)
Q Consensus 409 ~n~l~~~~~~-~~~l~~L~~l~l~~n~ 434 (453)
+|.+++..+. ...+++|+.+++++|+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCC
Confidence 6666644443 2556666666666664
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=4.2e-15 Score=126.41 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=90.7
Q ss_pred hcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 326 TLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
.+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 45668999999999988888889999999999999999997777788999999999999999998888999999999999
Q ss_pred EccCCcccccCCCCcccceeecccCCCCC-ccCCCCC
Q 048417 406 NLSNNNLTGKIPSSTQLQSFDASSFSGND-LCRAPLS 441 (453)
Q Consensus 406 ~l~~n~l~~~~~~~~~l~~L~~l~l~~n~-l~~~~~~ 441 (453)
++++|++.+..+.......++...+.++. .|+.|..
T Consensus 132 ~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp ECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred EeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChH
Confidence 99999998765432111223333443332 5555443
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=6.2e-15 Score=122.61 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=60.0
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCC-CccccCCCCCCEEEc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEI-PQSMSSLKFLNHLNL 407 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l 407 (453)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.. +..+..+++|++|++
T Consensus 50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 345555555555433 44555566666666666665445555555666666666666665321 145555666666666
Q ss_pred cCCcccccCC----CCcccceeecccCCCCCccCCC
Q 048417 408 SNNNLTGKIP----SSTQLQSFDASSFSGNDLCRAP 439 (453)
Q Consensus 408 ~~n~l~~~~~----~~~~l~~L~~l~l~~n~l~~~~ 439 (453)
++|++++..+ .+..+++|+.+++++|++...|
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 6666664433 2355566666666666554444
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.5e-16 Score=157.63 Aligned_cols=109 Identities=23% Similarity=0.368 Sum_probs=98.5
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
..|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..++.+++|+.|++++|++++ +| .+..+++|++|++
T Consensus 441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 358999999999985 565 889999999999999999 889999999999999999999995 66 8999999999999
Q ss_pred cCCccccc--CCCCcccceeecccCCCCCccCCCCC
Q 048417 408 SNNNLTGK--IPSSTQLQSFDASSFSGNDLCRAPLS 441 (453)
Q Consensus 408 ~~n~l~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~ 441 (453)
++|++++. ++.+..+++|+.+++++|++++.|..
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 99999987 45568999999999999999988754
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1.9e-14 Score=120.81 Aligned_cols=106 Identities=17% Similarity=0.145 Sum_probs=57.5
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEcc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLS 408 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 408 (453)
+|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 35555555555554444445555556666666665553333444555566666666665554444445555566666666
Q ss_pred CCcccccCCCC-cccceeecccCCCCC
Q 048417 409 NNNLTGKIPSS-TQLQSFDASSFSGND 434 (453)
Q Consensus 409 ~n~l~~~~~~~-~~l~~L~~l~l~~n~ 434 (453)
+|++++.++.. ..+++|+.+++++|+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCC
Confidence 66555444333 445555566665553
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2.8e-14 Score=132.35 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=46.2
Q ss_pred cccccEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcce-EEEecCCcccccCchhhcCCCCccE
Q 048417 181 LISLQSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIV-VLILRSNKFYNLLPKELCDLAFLQI 258 (453)
Q Consensus 181 l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~ 258 (453)
+++|+.+++.+|.++.+. ..|.+|.+|+.+++..+ + ..++...|..+.+|+ .+.+.. .+....+.+|..|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 344444444444444433 33444444444444443 2 223333444444554 555544 333334445555555555
Q ss_pred EEccCCcCCCCccccccccccccee
Q 048417 259 VDLADNNLSGEVPRCIHNLRAMVTM 283 (453)
Q Consensus 259 L~l~~~~~~~~~~~~~~~~~~L~~l 283 (453)
+++.++.+....+.+|..+++|+.+
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEeCCCccCccchhhhcCCcchhhh
Confidence 5555555543333455555555444
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=2.2e-14 Score=119.24 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=68.1
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC-CccccCCCCCCEEEcCCCcCCCCCC---ccccCCCCC
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI-PESVGTMRSLESIDFSLNQLSGEIP---QSMSSLKFL 402 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L 402 (453)
+++|++|++++|.+++..|..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|++.+..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 556788888888887656777767888888888888887432 2677888888888888888885544 477888888
Q ss_pred CEEEccCCccccc
Q 048417 403 NHLNLSNNNLTGK 415 (453)
Q Consensus 403 ~~L~l~~n~l~~~ 415 (453)
++|++++|.+...
T Consensus 150 ~~L~l~~n~~~~~ 162 (168)
T 2ell_A 150 TYLDGYDREDQEA 162 (168)
T ss_dssp CEETTEETTSCBC
T ss_pred cEecCCCCChhhc
Confidence 8888888887743
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=3.9e-14 Score=120.40 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=98.1
Q ss_pred cCcccEEecCCCcCCCcCCc-cccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPL-EVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
..+|++|++++|.+++..+. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+..+..+..+++|++|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 34799999999999866554 48899999999999999998888999999999999999999998888889999999999
Q ss_pred EccCCcccccCCCC-cccceeecccCCCCCc
Q 048417 406 NLSNNNLTGKIPSS-TQLQSFDASSFSGNDL 435 (453)
Q Consensus 406 ~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~l 435 (453)
++++|++++.+|.. ..+++|+.+++++|++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 99999999886654 7899999999999964
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=4.1e-13 Score=127.76 Aligned_cols=317 Identities=11% Similarity=0.026 Sum_probs=159.3
Q ss_pred CCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCCCcCccCCCCCcEEEccCCccccccccc
Q 048417 25 LGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLTNAAQLEVLSLGSNSFSIALPLI 104 (453)
Q Consensus 25 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 104 (453)
++.+...+|.+|.+|+++.+.. .+ ..++...|.+|.+|+.+++.++--.-....+.++.+|+.+.+..+ +.......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i-~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TV-REIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TC-CEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-Cc-cCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeeccee
Confidence 3445667888888888888864 35 455555568888888888876522223445667777776655433 11111111
Q ss_pred cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccc
Q 048417 105 SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISL 184 (453)
Q Consensus 105 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 184 (453)
+. .+..++....... .......|..+.+|+.+.+.++... .....|..+.+|
T Consensus 136 F~-------------------------~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L 187 (394)
T 4fs7_A 136 FK-------------------------GCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKL 187 (394)
T ss_dssp TT-------------------------TCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred ee-------------------------cccccccccCccc--cccchhhhcccCCCcEEecCCccce-eccccccCCCCc
Confidence 11 1111111111100 0011122344444444444332211 222334444444
Q ss_pred cEEEccCCcccccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccC
Q 048417 185 QSLHLRKNNLCGTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD 263 (453)
Q Consensus 185 ~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 263 (453)
+.+.+..+ ++.+. ..+..+..|+.+.+..+... ..... .....|+.+.+.... .......+..+..++.+.+..
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~-~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFA-LSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTT-TTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECC
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhh-cccCCCceEEECCCc-eecccccccccccceeEEcCC
Confidence 44444333 21121 33344444444444332210 01111 123345555443321 122233455555566655554
Q ss_pred CcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCc
Q 048417 264 NNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGK 343 (453)
Q Consensus 264 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 343 (453)
+... .....+..+..++.+......+ ....+..+.+|+.+.+..+ ++.+
T Consensus 263 ~~~~-i~~~~F~~~~~l~~~~~~~~~i-----------------------------~~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 263 NKLR-IGGSLFYNCSGLKKVIYGSVIV-----------------------------PEKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp TTCE-ECSCTTTTCTTCCEEEECSSEE-----------------------------CTTTTTTCTTCCEEEECTT-CCEE
T ss_pred Ccce-eeccccccccccceeccCceee-----------------------------ccccccccccccccccccc-ccee
Confidence 4322 2233344444444332221110 0112344667788887654 5445
Q ss_pred CCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCC
Q 048417 344 IPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410 (453)
Q Consensus 344 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 410 (453)
...+|..|++|+.++|..+ ++.....+|.+|++|+.+++..+ +......+|.++++|+.+++..+
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 5667888889999998754 55344577888999999998776 66566778889999999988654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=2.1e-14 Score=116.86 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=56.3
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCC-CCccccCCCCCCEEEc
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGE-IPQSMSSLKFLNHLNL 407 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l 407 (453)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+. .+..+..+++|++|++
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 345555555555433 4455566666666666666644555555566666666666666532 2255566666666666
Q ss_pred cCCcccccCC----CCcccceeecccCC
Q 048417 408 SNNNLTGKIP----SSTQLQSFDASSFS 431 (453)
Q Consensus 408 ~~n~l~~~~~----~~~~l~~L~~l~l~ 431 (453)
++|++++..+ ....+++|+.++++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666664433 13555566666554
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1e-13 Score=115.29 Aligned_cols=112 Identities=22% Similarity=0.286 Sum_probs=92.1
Q ss_pred ccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 330 VRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 330 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
.+.+++++++++ .+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578999999988 5665553 7899999999999977788889999999999999999977777788999999999999
Q ss_pred CcccccCCC-CcccceeecccCCCCCccCCCCCCCCCCCcc
Q 048417 410 NNLTGKIPS-STQLQSFDASSFSGNDLCRAPLSGNCSEHVS 449 (453)
Q Consensus 410 n~l~~~~~~-~~~l~~L~~l~l~~n~l~~~~~~~~c~~~~~ 449 (453)
|++++..+. ...+++|+.+++++| |+.|.|+++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-----~~~c~c~~l~~ 123 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN-----PWDCACSDILY 123 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-----CBCTTBGGGHH
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC-----CCCCCchhHHH
Confidence 999976665 478899999999998 55566665443
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=2.4e-14 Score=146.27 Aligned_cols=114 Identities=32% Similarity=0.395 Sum_probs=64.3
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
.+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..|..+++|++|++++|.+..++..+..+++|+.|+
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe
Confidence 3566666666666666 55555666666666666666666 455566666666666666666665555566666666666
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCc
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP 247 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 247 (453)
+++|.+.+..+..+.........+++.+|.+.+..|
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 666666554444332211112234455555544433
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=6.4e-13 Score=112.83 Aligned_cols=89 Identities=24% Similarity=0.277 Sum_probs=77.9
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 406 (453)
+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|++....+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 45578899999999877777899999999999999999977777899999999999999999966666789999999999
Q ss_pred ccCCccccc
Q 048417 407 LSNNNLTGK 415 (453)
Q Consensus 407 l~~n~l~~~ 415 (453)
+++|++...
T Consensus 133 L~~N~~~C~ 141 (193)
T 2wfh_A 133 IGANPLYCD 141 (193)
T ss_dssp CCSSCEECS
T ss_pred eCCCCeecC
Confidence 999998753
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=2.4e-14 Score=146.28 Aligned_cols=115 Identities=26% Similarity=0.351 Sum_probs=61.4
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEe
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLD 211 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 211 (453)
.++.|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..|..+++|+.|++++|.++.++..+..+++|+.|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 4555555555555555 44444445555555555555555 445555555555555555555554444444455555555
Q ss_pred CCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccc
Q 048417 212 VGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCI 274 (453)
Q Consensus 212 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 274 (453)
+++|.+ . .+|..|..+++|+.|++++|.+.+.+|..+
T Consensus 300 L~~N~l-------------------------~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 300 FFDNMV-------------------------T-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCSSCC-------------------------C-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCC-------------------------C-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 554444 3 234445555666666666666655444443
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=7.5e-13 Score=110.93 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=78.8
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLN 406 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 406 (453)
+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 45678888888888866666778899999999999999966666788999999999999999966666778899999999
Q ss_pred ccCCcccccCCCC
Q 048417 407 LSNNNLTGKIPSS 419 (453)
Q Consensus 407 l~~n~l~~~~~~~ 419 (453)
+++|++.+..+.+
T Consensus 131 l~~N~~~~~~~~l 143 (177)
T 2o6r_A 131 LHTNPWDCSCPRI 143 (177)
T ss_dssp CCSSCBCCCHHHH
T ss_pred ecCCCeeccCccH
Confidence 9999999776644
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.5e-13 Score=113.25 Aligned_cols=109 Identities=20% Similarity=0.306 Sum_probs=88.1
Q ss_pred cEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCC
Q 048417 331 RIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNN 410 (453)
Q Consensus 331 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 410 (453)
+.+++++++++ .+|..+. ++|+.|++++|.+.+..+..|..+++|++|++++|++.+..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 78889988887 5665554 78999999999998777788888999999999999998666666788999999999999
Q ss_pred cccccCCC-CcccceeecccCCCCCccCCCCCCCCCCC
Q 048417 411 NLTGKIPS-STQLQSFDASSFSGNDLCRAPLSGNCSEH 447 (453)
Q Consensus 411 ~l~~~~~~-~~~l~~L~~l~l~~n~l~~~~~~~~c~~~ 447 (453)
++++.++. ...+++|+.+++++| ++.|.|.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N-----~~~c~~~~~ 124 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN-----PWDCECRDI 124 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS-----CBCTTBGGG
T ss_pred ccceeCHHHhccccCCCEEEeCCC-----CcccccccH
Confidence 99876665 577889999999888 445555543
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.9e-13 Score=111.14 Aligned_cols=127 Identities=21% Similarity=0.191 Sum_probs=59.8
Q ss_pred cCcccEEeccCCCCC-CCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccc-ccccccccCCCCEE
Q 048417 133 LNKWQILYLSGNFLQ-GELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCG-TIHSLENCTALMTL 210 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L 210 (453)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+ .+..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 455666666666655 34455555556666666666655533 344555555555555555554 22333334555555
Q ss_pred eCCCCcccccCchHHHhccCcceEEEecCCcccccCc---hhhcCCCCccEEEc
Q 048417 211 DVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP---KELCDLAFLQIVDL 261 (453)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 261 (453)
++++|.+.+......+..+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555544331111112234444444444444433322 23444444444443
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=3.1e-12 Score=121.26 Aligned_cols=263 Identities=8% Similarity=0.039 Sum_probs=183.4
Q ss_pred CCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC-CCcCccCCCCCcEE
Q 048417 12 PFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG-QIPNLTNAAQLEVL 90 (453)
Q Consensus 12 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~~L 90 (453)
+..++.+.+.. .++.....+|.++ +|+.+.+..+ + ..++...|.++ +|+.+.+.+ .+.. ....+.++.+|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 46677777754 4666667778776 6888888765 5 44444444554 688888876 3433 34567788888888
Q ss_pred EccCCccccccccc--cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccC
Q 048417 91 SLGSNSFSIALPLI--SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNN 168 (453)
Q Consensus 91 ~l~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 168 (453)
++.+|.+....... ...|+.+.+..+ +.... ...|.++++|+.+++..+ ++......|.. .+|+.+.+.+
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~----~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~- 257 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIG----SQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN- 257 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEEC----TTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hheeh----hhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-
Confidence 88887776544433 357888887644 33211 124456889999999864 44344455666 7899999954
Q ss_pred ccCCCCCccccccccccEEEccCCccc-----ccc-ccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcc
Q 048417 169 KFTGNLPISLGSLISLQSLHLRKNNLC-----GTI-HSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKF 242 (453)
Q Consensus 169 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 242 (453)
.+.......|..+++|+.+.+.++.+. .+. ..|.+|++|+.+.+..+ + ..+....|..+.+|+.+.+..+ +
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i-~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I-RILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCCSCCEEEECTT-C
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e-EEEhhhhhcCCCCccEEEECcc-c
Confidence 455466678899999999999887664 233 67889999999999853 4 4466667778899999999655 5
Q ss_pred cccCchhhcCCCCccEEEccCCcCCCCccccccccc-ccceeccccCcchh
Q 048417 243 YNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLR-AMVTMNSHAGKAIQ 292 (453)
Q Consensus 243 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~i~~~~~~~ 292 (453)
......+|..+ +|+.+.+.++.........+..++ .+..+.+..+....
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHH
Confidence 56667789999 999999999987755556677664 56677666554333
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2e-13 Score=114.31 Aligned_cols=103 Identities=21% Similarity=0.187 Sum_probs=57.8
Q ss_pred cccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCc--cccCCCCCCEEE
Q 048417 329 LVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQ--SMSSLKFLNHLN 406 (453)
Q Consensus 329 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~ 406 (453)
+|++|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++. .+|. .+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 456666666665533 34555666666666666665332233355666666666666664 3333 555666666666
Q ss_pred ccCCcccccCCC----CcccceeecccCCCCC
Q 048417 407 LSNNNLTGKIPS----STQLQSFDASSFSGND 434 (453)
Q Consensus 407 l~~n~l~~~~~~----~~~l~~L~~l~l~~n~ 434 (453)
+++|+++...+. +..+++|+.+++++|.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666533221 3556666666666554
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=5.8e-12 Score=119.37 Aligned_cols=87 Identities=2% Similarity=-0.037 Sum_probs=56.4
Q ss_pred hhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCC-CC
Q 048417 324 ERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLK-FL 402 (453)
Q Consensus 324 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L 402 (453)
+..+++|+.+++.. +++.+...+|..|++|+.+.|..+ +......+|.++ +|+.+++.+|.........|..++ .+
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence 34566677777763 355455566777777777777544 443444667777 777777777777655556666664 67
Q ss_pred CEEEccCCccc
Q 048417 403 NHLNLSNNNLT 413 (453)
Q Consensus 403 ~~L~l~~n~l~ 413 (453)
+.|++..+.+.
T Consensus 373 ~~l~vp~~~~~ 383 (401)
T 4fdw_A 373 TVIRVPAESVE 383 (401)
T ss_dssp CEEEECGGGHH
T ss_pred cEEEeCHHHHH
Confidence 77777666543
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.2e-12 Score=108.71 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=82.2
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45799999999999888888999999999999999999666677899999999999999999777778999999999999
Q ss_pred cCCcccccCCCC
Q 048417 408 SNNNLTGKIPSS 419 (453)
Q Consensus 408 ~~n~l~~~~~~~ 419 (453)
++|++....+.+
T Consensus 110 ~~N~~~c~c~~l 121 (170)
T 3g39_A 110 LNNPWDCACSDI 121 (170)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCCCCCchhH
Confidence 999998766544
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=3.1e-12 Score=106.57 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=82.1
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45899999999999888889999999999999999999655566789999999999999999666667999999999999
Q ss_pred cCCcccccCCCCccc
Q 048417 408 SNNNLTGKIPSSTQL 422 (453)
Q Consensus 408 ~~n~l~~~~~~~~~l 422 (453)
++|++....+.+..+
T Consensus 113 ~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 113 YNNPWDCECRDIMYL 127 (174)
T ss_dssp CSSCBCTTBGGGHHH
T ss_pred CCCCcccccccHHHH
Confidence 999999665544333
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=4.3e-15 Score=127.15 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=71.5
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCC-ccccCCCCCCEE
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIP-QSMSSLKFLNHL 405 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L 405 (453)
+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..+++|++|++++|++.+..+ ..+..+++|++|
T Consensus 69 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 455677777777776 455555556777777777777773 44 56677778888888887774222 356777788888
Q ss_pred EccCCcccccCCC-----------CcccceeecccCCCCCccCC
Q 048417 406 NLSNNNLTGKIPS-----------STQLQSFDASSFSGNDLCRA 438 (453)
Q Consensus 406 ~l~~n~l~~~~~~-----------~~~l~~L~~l~l~~n~l~~~ 438 (453)
++++|++.+.+|. +..+++|+.+| +|+++..
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 8888887766554 45566777665 6655543
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=9.5e-14 Score=130.34 Aligned_cols=160 Identities=18% Similarity=0.093 Sum_probs=88.2
Q ss_pred CcccEEEcCCCcccccchhhHhh----cCCCeEEEEccCCcccCC-CcC-ccCCCCCcEEEccCCcccccccc-------
Q 048417 37 KHLNYLDLSYSGIIGTIPNIFWS----SASQIYVLDLSFNQIHGQ-IPN-LTNAAQLEVLSLGSNSFSIALPL------- 103 (453)
Q Consensus 37 ~~L~~L~l~~~~~~~~~~~~~~~----~l~~L~~L~ls~~~~~~~-~~~-l~~~~~L~~L~l~~~~~~~~~~~------- 103 (453)
++|++|++++|.++......+.. ..++|++|++++|.++.. ... ...+.+|+.|++++|.+......
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666666666653332222211 124566666666655421 111 12233566666666665432211
Q ss_pred -ccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCC----CchhhhcCCcccEEEcccCccCCCCC---
Q 048417 104 -ISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGE----LPDCWMNYQNLMILDLSNNKFTGNLP--- 175 (453)
Q Consensus 104 -~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~--- 175 (453)
..+.|++|++++|.++......++..+...++|++|++++|.+++. ++..+...++|++|++++|.+++...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1245677777777766655556666666677777777777776532 13345556677777777777663222
Q ss_pred -ccccccccccEEEccCCcccc
Q 048417 176 -ISLGSLISLQSLHLRKNNLCG 196 (453)
Q Consensus 176 -~~l~~l~~L~~L~l~~~~~~~ 196 (453)
..+...++|++|++++|.++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 223345677777777777754
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=5.3e-12 Score=105.57 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=41.7
Q ss_pred ccCcccEEeccCCCCCCCCchhhhcCC-cccEEEcccCccCCCCCccccccccccEEEccCCccccccccc-cccCCCCE
Q 048417 132 ELNKWQILYLSGNFLQGELPDCWMNYQ-NLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSL-ENCTALMT 209 (453)
Q Consensus 132 ~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 209 (453)
.+++|++|++++|.++ .++. +..+. +|++|++++|.+.+. ..+..+++|++|++++|.++.+++.+ ..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3555666666666655 2333 33332 566666666655532 34455555555555555555444222 44455555
Q ss_pred EeCCCCcc
Q 048417 210 LDVGENEL 217 (453)
Q Consensus 210 L~l~~~~~ 217 (453)
|++++|.+
T Consensus 93 L~L~~N~i 100 (176)
T 1a9n_A 93 LILTNNSL 100 (176)
T ss_dssp EECCSCCC
T ss_pred EECCCCcC
Confidence 55555544
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.32 E-value=1.9e-11 Score=116.23 Aligned_cols=331 Identities=10% Similarity=0.018 Sum_probs=208.4
Q ss_pred ccchhhHhhcCCCeEEEEccCCcccC-CCcCccCCCCCcEEEccCCccccccccccccCcEEECcCCCCCCchhhhhhhh
Q 048417 51 GTIPNIFWSSASQIYVLDLSFNQIHG-QIPNLTNAAQLEVLSLGSNSFSIALPLISSYLIELDFSNNSISGSIFHFICYR 129 (453)
Q Consensus 51 ~~~~~~~~~~l~~L~~L~ls~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 129 (453)
..+....|.++.+|+.+.+..+ ++. ...++.++.+|+.+++.++ +..... ..
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-------------------------~a 112 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGR-------------------------CT 112 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-------------------------TT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccc-------------------------hh
Confidence 4466666699999999999865 443 4557888999999988654 221111 12
Q ss_pred hcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCcccccc-ccccccCCCC
Q 048417 130 ANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTI-HSLENCTALM 208 (453)
Q Consensus 130 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~ 208 (453)
+.++..|+.+.+..+ +.......|..+..+........ .......|..+.+|+.+.+.++.. .+. ..+.++.+|+
T Consensus 113 F~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~ 188 (394)
T 4fs7_A 113 FSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLK 188 (394)
T ss_dssp TTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCC
T ss_pred hcccccchhhcccCc-eeeecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCce
Confidence 234666666555433 22233344555544433333322 223345788999999999976543 333 6788899999
Q ss_pred EEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCcccccccccccceeccccC
Q 048417 209 TLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAG 288 (453)
Q Consensus 209 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~ 288 (453)
.+.+..+ + ..+....+..+..|+.+.+..+.... .........|+.+.+.... .......+..+..++.+.+..+
T Consensus 189 ~i~l~~~-~-~~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 189 SIKLPRN-L-KIIRDYCFAECILLENMEFPNSLYYL--GDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp BCCCCTT-C-CEECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT
T ss_pred EEEcCCC-c-eEeCchhhccccccceeecCCCceEe--ehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCC
Confidence 9999765 2 33455566678888888776654321 2233445788888876543 2233456667777777665443
Q ss_pred cchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhhcCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCC
Q 048417 289 KAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERTLNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRI 368 (453)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 368 (453)
... .....+..+..++.+......+ ....+..+.+|+.+.+.++ +....
T Consensus 264 ~~~---------------------------i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~ 312 (394)
T 4fs7_A 264 KLR---------------------------IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIG 312 (394)
T ss_dssp TCE---------------------------ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEEC
T ss_pred cce---------------------------eeccccccccccceeccCceee---ccccccccccccccccccc-cceec
Confidence 210 1122234466677777665533 2346778999999999865 55344
Q ss_pred CccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-cccceeecccCCCCC-ccCCCCCCCCCC
Q 048417 369 PESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTGKIPSS-TQLQSFDASSFSGND-LCRAPLSGNCSE 446 (453)
Q Consensus 369 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~n~-l~~~~~~~~c~~ 446 (453)
..+|.+|++|+.+++..+ +.......|.++.+|+.+++..+ ++..-+.. ...++|+.+++..+- ..+. .=..|.+
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~~~~~-~F~~c~~ 389 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLEQYRY-DFEDTTK 389 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGGGGGG-GBCTTCE
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCEEhhh-eecCCCC
Confidence 578999999999999755 66566789999999999999876 55322222 667788888885432 1121 2236777
Q ss_pred CccCC
Q 048417 447 HVSIP 451 (453)
Q Consensus 447 ~~~~~ 451 (453)
++.|+
T Consensus 390 L~~IK 394 (394)
T 4fs7_A 390 FKWIK 394 (394)
T ss_dssp EEEEC
T ss_pred CcEEC
Confidence 76653
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=3.2e-10 Score=107.70 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=39.1
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEc
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNL 407 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 407 (453)
++|+.+.+.. .+......+|..|.+|+.+.|..+ ++.....+|.+|.+|+.+.+..+ ++......|.++++|+.+++
T Consensus 288 ~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 3344444432 232233344555555666655543 33222345555556666655433 33344445555666666665
Q ss_pred cCCc
Q 048417 408 SNNN 411 (453)
Q Consensus 408 ~~n~ 411 (453)
.++.
T Consensus 365 ~~~~ 368 (394)
T 4gt6_A 365 SGSR 368 (394)
T ss_dssp SSCH
T ss_pred CCce
Confidence 5554
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=3.1e-13 Score=115.48 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=79.3
Q ss_pred cCcccEEeccCCCCCCCCch------hhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCccccccccccccCC
Q 048417 133 LNKWQILYLSGNFLQGELPD------CWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTA 206 (453)
Q Consensus 133 ~~~L~~L~l~~~~~~~~~~~------~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 206 (453)
.+.++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++.++..+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 44444444444444433332 55556666666666666553 33 455556666666666666554444444556
Q ss_pred CCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCc-hhhcCCCCccEEEccCCcCCCCccc----------ccc
Q 048417 207 LMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLP-KELCDLAFLQIVDLADNNLSGEVPR----------CIH 275 (453)
Q Consensus 207 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~ 275 (453)
|+.|++++|.+.+ ++ . +..+++|+.|++++|.+..... ..+..+++|++|++++|.+.+..|. .+.
T Consensus 95 L~~L~L~~N~l~~-l~-~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp CSEEEEEEEECCC-HH-H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-c-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 6666666665544 22 1 2345666666666666544322 3455666666666666666543332 255
Q ss_pred cccccceec
Q 048417 276 NLRAMVTMN 284 (453)
Q Consensus 276 ~~~~L~~l~ 284 (453)
.+++|+.|+
T Consensus 172 ~l~~L~~Ld 180 (198)
T 1ds9_A 172 RLPNLKKLD 180 (198)
T ss_dssp HCSSCSEEC
T ss_pred hCCCcEEEC
Confidence 666666664
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=1.5e-12 Score=122.12 Aligned_cols=165 Identities=18% Similarity=0.068 Sum_probs=125.0
Q ss_pred cCCCeEEEEccCCcccCC-----CcCcc-CCCCCcEEEccCCccccccc----cccccCcEEECcCCCCCCchhhhhhhh
Q 048417 60 SASQIYVLDLSFNQIHGQ-----IPNLT-NAAQLEVLSLGSNSFSIALP----LISSYLIELDFSNNSISGSIFHFICYR 129 (453)
Q Consensus 60 ~l~~L~~L~ls~~~~~~~-----~~~l~-~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~l~~~~~~~~~~~ 129 (453)
.++.|+.|++++|.++.. ...+. ...+|+.|++++|.+..... ..+++|++|++++|.++......++..
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 467899999999998742 11222 23699999999999875332 235689999999999998777777766
Q ss_pred hc-ccCcccEEeccCCCCCCC----CchhhhcCCcccEEEcccCccCCCC----CccccccccccEEEccCCcccccc--
Q 048417 130 AN-ELNKWQILYLSGNFLQGE----LPDCWMNYQNLMILDLSNNKFTGNL----PISLGSLISLQSLHLRKNNLCGTI-- 198 (453)
Q Consensus 130 ~~-~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~-- 198 (453)
+. ..+.|++|++++|.++.. ++..+...++|++|++++|.+.+.. +..+...++|+.|++++|.++...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 63 578999999999998742 3344577899999999999887432 344566789999999999987532
Q ss_pred ---ccccccCCCCEEeCCCCcccccCchH
Q 048417 199 ---HSLENCTALMTLDVGENELVENIPTW 224 (453)
Q Consensus 199 ---~~~~~~~~L~~L~l~~~~~~~~~~~~ 224 (453)
..+...++|++|++++|.+.+.....
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 44556789999999999986644433
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=4.4e-11 Score=111.68 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=66.1
Q ss_pred EEecCCC-cCCCcCCccccCCCCCcEEEcCC-ccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccC
Q 048417 332 IIDFSKN-NFSGKIPLEVTNLKVLQSVNLSN-NFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSN 409 (453)
Q Consensus 332 ~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 409 (453)
.++++++ +++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|++.+..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566665 666 4555 66677777777775 777655556677777777777777777766666677777777777777
Q ss_pred CcccccCCCCcccceeecccCCCCC
Q 048417 410 NNLTGKIPSSTQLQSFDASSFSGND 434 (453)
Q Consensus 410 n~l~~~~~~~~~l~~L~~l~l~~n~ 434 (453)
|++++.++..-....|+.+++.+|+
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 7777555544222237777777664
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=6.1e-09 Score=98.84 Aligned_cols=268 Identities=8% Similarity=0.076 Sum_probs=135.1
Q ss_pred CCCcCCC-cccEEEccCCcCCCCCCccccCCCcccEEEcCCCc---ccccchhhHhhcCCCeEEEEccCCcccCCCcCcc
Q 048417 7 DNWIPPF-QLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSG---IIGTIPNIFWSSASQIYVLDLSFNQIHGQIPNLT 82 (453)
Q Consensus 7 ~~~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~l~ 82 (453)
.+|.+++ .|+.+.+... ++.....+|.+|.+|+.+.+..+. + ..+....|..+..|+.+.+.++--.-....+.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l-~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCV-KKIGRQAFMFCSELTDIPILDSVTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCC-CEECTTTTTTCTTCCBCGGGTTCSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCee-eEechhhchhcccceeeccCCccceehhhhhh
Confidence 4577775 5899998654 677778889999999999887653 4 44555555777777777766553222344566
Q ss_pred CCCCCcEEEccCCccc--cccccccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcc
Q 048417 83 NAAQLEVLSLGSNSFS--IALPLISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNL 160 (453)
Q Consensus 83 ~~~~L~~L~l~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 160 (453)
.+.+|+.+.+..+... ......+..|+.+.+..+-.. ..... | ....|+.+.+..+-.. .....+..+..+
T Consensus 135 ~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~~~-I~~~a----F-~~~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSVTA-IEERA----F-TGTALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTT----T-TTCCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhcccccccccceeeeecccceecccccccccccceeeE-ecccc----c-cccceeEEEECCcccc-cccchhhhcccc
Confidence 6677777777543211 111112334555544332110 00000 0 1223333333221110 111111222222
Q ss_pred c-------------------------------------EEEcccCccCCCCCccccccccccEEEccCCccccccccccc
Q 048417 161 M-------------------------------------ILDLSNNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLEN 203 (453)
Q Consensus 161 ~-------------------------------------~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 203 (453)
+ .+.+... +.......|..+..|+.+.+..+...--...+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~ 286 (394)
T 4gt6_A 208 STITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVSIGTGAFMN 286 (394)
T ss_dssp CEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCEECTTTTTT
T ss_pred ceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccceecCccccc
Confidence 1 1221111 1112223455566666666654432212245566
Q ss_pred cCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccCchhhcCCCCccEEEccCCcCCCCccccccccccccee
Q 048417 204 CTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTM 283 (453)
Q Consensus 204 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 283 (453)
++.|+.+.+... + ..++...|..+.+|+.+.+..+ +......+|..|.+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus 287 c~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 287 CPALQDIEFSSR-I-TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CTTCCEEECCTT-C-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEE
T ss_pred ccccccccCCCc-c-cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEE
Confidence 666666666432 2 2344455556666666666543 33334456666666766666543 332334566666666666
Q ss_pred ccccC
Q 048417 284 NSHAG 288 (453)
Q Consensus 284 ~i~~~ 288 (453)
++.++
T Consensus 363 ~~~~~ 367 (394)
T 4gt6_A 363 EYSGS 367 (394)
T ss_dssp EESSC
T ss_pred EECCc
Confidence 66554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.98 E-value=1.9e-09 Score=100.60 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=72.5
Q ss_pred cCcccEEecCC-CcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEE
Q 048417 327 LNLVRIIDFSK-NNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHL 405 (453)
Q Consensus 327 ~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 405 (453)
+++|+.|++++ |.+++..+..|..+++|+.|+|++|.+.+..+..|..+++|++|+|++|++.+..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 44578888886 888866777888899999999999999877778888999999999999999866666666666 9999
Q ss_pred EccCCccccc
Q 048417 406 NLSNNNLTGK 415 (453)
Q Consensus 406 ~l~~n~l~~~ 415 (453)
++.+|.+...
T Consensus 109 ~l~~N~~~c~ 118 (347)
T 2ifg_A 109 VLSGNPLHCS 118 (347)
T ss_dssp ECCSSCCCCC
T ss_pred EeeCCCccCC
Confidence 9999988753
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.96 E-value=6.6e-08 Score=91.20 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=16.5
Q ss_pred ccCcceEEEecCCcccccCchhhcCCCCccEEEccC
Q 048417 228 RFSRIVVLILRSNKFYNLLPKELCDLAFLQIVDLAD 263 (453)
Q Consensus 228 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 263 (453)
....++.+.+..+ +.......+..+..|+.+.+..
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~ 249 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK 249 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCC
Confidence 3444555554332 2222334455566666665544
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.75 E-value=5.4e-07 Score=84.91 Aligned_cols=312 Identities=7% Similarity=-0.008 Sum_probs=170.1
Q ss_pred cCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccCC-CcCccCCCCCc
Q 048417 10 IPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHGQ-IPNLTNAAQLE 88 (453)
Q Consensus 10 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~-~~~l~~~~~L~ 88 (453)
....+|+.+.+.. .++.+...+|.+|.+|+.+++..+ + ..++...|.++ .|+.+.+..+ ++.. ...+.. .+|+
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v-~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-V-TSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-C-CEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-c-eEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 4456899999964 467778889999999999999654 5 45666656776 6777777654 3322 233433 4799
Q ss_pred EEEccCCccccccccc--cccCcEEECcCCCCCCchhhhhhhhhcccCcccEEeccCCCCCCCCchhhhcCCcccEEEcc
Q 048417 89 VLSLGSNSFSIALPLI--SSYLIELDFSNNSISGSIFHFICYRANELNKWQILYLSGNFLQGELPDCWMNYQNLMILDLS 166 (453)
Q Consensus 89 ~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 166 (453)
.+.+..+-.. ..... -..+..+.+..+.-. .. ...+..+..++.+.+........... .....
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~~l~~~~~~~~v~~-i~----~~~f~~~~~l~~~~~~~~~~~~~~~~-~~~~~-------- 181 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNSSVKRIVIPKSVTT-IK----DGIGYKAENLEKIEVSSNNKNYVAEN-YVLYN-------- 181 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTCCCCEEEECTTCCE-EC----SCTTTTCTTCCEEEECTTCSSEEEET-TEEEE--------
T ss_pred cccCCCcccc-ccccccccceeeeeeccceeec-cc----cchhcccccccccccccccceeeccc-ceecc--------
Confidence 9988765221 11111 123444433322100 00 01122355555555543322100000 00000
Q ss_pred cCccCCCCCccccccccccEEEccCCccccccccccccCCCCEEeCCCCcccccCchHHHhccCcceEEEecCCcccccC
Q 048417 167 NNKFTGNLPISLGSLISLQSLHLRKNNLCGTIHSLENCTALMTLDVGENELVENIPTWIRERFSRIVVLILRSNKFYNLL 246 (453)
Q Consensus 167 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 246 (453)
. .......+.....+..+.+...........+..+..++.+.+.... ..+....+..+..|+.+.+..+ +....
T Consensus 182 ~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~ 255 (379)
T 4h09_A 182 K---NKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIG 255 (379)
T ss_dssp T---TSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred c---ccceeccccccccccccccccceeEEeecccccccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeC
Confidence 0 0011112333344444444333222222445556667777665432 2233334446677777777654 44444
Q ss_pred chhhcCCCCccEEEccCCcCCCCcccccccccccceeccccCcchhhhhhhhhccchhhhhhhhhHHHHhcCCcchhhhh
Q 048417 247 PKELCDLAFLQIVDLADNNLSGEVPRCIHNLRAMVTMNSHAGKAIQYQFLLYASRAPLIATLLEDAFVVMKGREAKYERT 326 (453)
Q Consensus 247 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (453)
..++..+.+|+.+.+..+ +......+ +..
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~a--------------------------------------------------F~~ 284 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLL--------------------------------------------------CSG 284 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTT--------------------------------------------------TTT
T ss_pred ccccceeehhcccccccc-ceeccccc--------------------------------------------------ccc
Confidence 567777888888877543 22111112 234
Q ss_pred cCcccEEecCCCcCCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCC
Q 048417 327 LNLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKF 401 (453)
Q Consensus 327 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 401 (453)
+.+|+.+.+.++.++.+...+|..|.+|+.+.|..+ ++.....+|.+|++|+.+.+..+ ++......|.+++.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 556777777776666555667888888888888754 54334467888888888888655 55455566766643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=1.5e-08 Score=94.28 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=6.8
Q ss_pred cCCCCEEeCCCCcc
Q 048417 204 CTALMTLDVGENEL 217 (453)
Q Consensus 204 ~~~L~~L~l~~~~~ 217 (453)
.++|++|++..+.+
T Consensus 192 ~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 192 RPNLKSLEIISGGL 205 (362)
T ss_dssp CTTCSEEEEECSBC
T ss_pred CCCCcEEEEecCCC
Confidence 34455555544443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=1.8e-08 Score=93.66 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=111.8
Q ss_pred CCCCcCCCcccEEEccCCcCC---------CCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCCcccC
Q 048417 6 NDNWIPPFQLATLGLRHCHLG---------SRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFNQIHG 76 (453)
Q Consensus 6 ~~~~~~~~~L~~L~L~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~ 76 (453)
.++...+++|+.|.+...... +.+...+..+|+|++|+++++.- -.++. + .+++|++|++..|.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~--~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K--PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C--BCTTCSEEEEECSBCCH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c--cCCCCcEEEEecCCCCh
Confidence 445556788888888654321 12334456788999999987631 11222 2 26889999998887753
Q ss_pred -CCcCc--cCCCCCcEEEccCC--cccc---------ccc-cccccCcEEECcCCCCCCchhhhhhhhhcccCcccEEec
Q 048417 77 -QIPNL--TNAAQLEVLSLGSN--SFSI---------ALP-LISSYLIELDFSNNSISGSIFHFICYRANELNKWQILYL 141 (453)
Q Consensus 77 -~~~~l--~~~~~L~~L~l~~~--~~~~---------~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l 141 (453)
....+ ..+++|+.|+|+.+ ...+ ... ..+++|++|++.+|.+.......+... ..+++|++|++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdL 286 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDI 286 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEEC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEEC
Confidence 11222 26788888888532 1111 111 236789999999888775444333321 35789999999
Q ss_pred cCCCCCCC----CchhhhcCCcccEEEcccCccCCCCCccccccccccEEEccCCc
Q 048417 142 SGNFLQGE----LPDCWMNYQNLMILDLSNNKFTGNLPISLGSLISLQSLHLRKNN 193 (453)
Q Consensus 142 ~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 193 (453)
+.|.+.+. ++..+..+++|++|++++|.+.+.....+.... ...++++.+.
T Consensus 287 s~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp CSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 99888743 233345678999999999887643322232210 3567777665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=4.4e-08 Score=82.12 Aligned_cols=65 Identities=15% Similarity=0.092 Sum_probs=35.6
Q ss_pred cCcEEECcCCCCCCchhhhhhhhhcccCcccEEec--cCCCCCCC----CchhhhcCCcccEEEcccCccC
Q 048417 107 YLIELDFSNNSISGSIFHFICYRANELNKWQILYL--SGNFLQGE----LPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 107 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
+|++|++++|.+.......++..+...+.|++|++ ++|.+... +...+...+.|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 45555555555555555555555555666666666 55655522 1223344456666666666553
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=7e-08 Score=80.88 Aligned_cols=115 Identities=12% Similarity=0.005 Sum_probs=55.8
Q ss_pred cccCCCcccEEEcCCC-cccccchhhH---hhcCCCeEEEEccCCcccC-----CCcCccCCCCCcEEEccCCccccccc
Q 048417 32 WLYSQKHLNYLDLSYS-GIIGTIPNIF---WSSASQIYVLDLSFNQIHG-----QIPNLTNAAQLEVLSLGSNSFSIALP 102 (453)
Q Consensus 32 ~l~~~~~L~~L~l~~~-~~~~~~~~~~---~~~l~~L~~L~ls~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~ 102 (453)
.+...++|++|+|++| .+.......+ +...+.|++|+|++|.+.. ....+...++|++|++++|.+.....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566666666666 5533222111 1334556666666655542 12223334455555555555543211
Q ss_pred -------cccccCcEEEC--cCCCCCCchhhhhhhhhcccCcccEEeccCCCC
Q 048417 103 -------LISSYLIELDF--SNNSISGSIFHFICYRANELNKWQILYLSGNFL 146 (453)
Q Consensus 103 -------~~~~~L~~L~l--~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 146 (453)
...++|++|++ ++|.+.......++..+...+.|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 11234555555 555555555555555555555555555555544
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=8.2e-08 Score=78.44 Aligned_cols=92 Identities=10% Similarity=0.064 Sum_probs=65.7
Q ss_pred ccCCCCcCCCcccEEEccCCcCCCCCCccccCCCcccEEEcCCCc-ccccchhhHhhc----CCCeEEEEccCC-cccC-
Q 048417 4 KVNDNWIPPFQLATLGLRHCHLGSRFPSWLYSQKHLNYLDLSYSG-IIGTIPNIFWSS----ASQIYVLDLSFN-QIHG- 76 (453)
Q Consensus 4 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~----l~~L~~L~ls~~-~~~~- 76 (453)
.+|........|+.||+++|.++...-..+.++++|++|+|++|. +++..-..+ .. +++|++|++++| ++++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHH
Confidence 356555555678999999998877766778889999999998885 544444444 33 357888888887 4664
Q ss_pred CCcCccCCCCCcEEEccCCc
Q 048417 77 QIPNLTNAAQLEVLSLGSNS 96 (453)
Q Consensus 77 ~~~~l~~~~~L~~L~l~~~~ 96 (453)
....+..+++|+.|++++|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 34456667788888887774
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=1e-07 Score=77.87 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=67.6
Q ss_pred CcccEEecCCCcCCCcCCccccCCCCCcEEEcCCcc-CCCCCCccccCC----CCCCEEEcCCCc-CCCCCCccccCCCC
Q 048417 328 NLVRIIDFSKNNFSGKIPLEVTNLKVLQSVNLSNNF-FTGRIPESVGTM----RSLESIDFSLNQ-LSGEIPQSMSSLKF 401 (453)
Q Consensus 328 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~ 401 (453)
..|++||++++.+++.....+..+++|++|+|++|. +++.....++.+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999887666677889999999999995 654433445553 479999999985 77655566778999
Q ss_pred CCEEEccCCc-cc
Q 048417 402 LNHLNLSNNN-LT 413 (453)
Q Consensus 402 L~~L~l~~n~-l~ 413 (453)
|++|++++|. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999985 44
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=1.3e-06 Score=76.90 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=33.3
Q ss_pred hcCcccEEecCCCcCCC--cCCccccCCCCCcEEEcCCccCCCCCCccccCCC--CCCEEEcCCCcCCCCC
Q 048417 326 TLNLVRIIDFSKNNFSG--KIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMR--SLESIDFSLNQLSGEI 392 (453)
Q Consensus 326 ~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~ 392 (453)
.+++|++|++++|.+++ .++..+..+++|+.|+|++|.+.+. +.+..+. +|++|++++|++.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 35556666666666654 2233444556666666666665532 1222222 5555555555555433
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=1.5e-06 Score=76.57 Aligned_cols=80 Identities=25% Similarity=0.292 Sum_probs=60.9
Q ss_pred cCCCCCcEEEcCCccCCC--CCCccccCCCCCCEEEcCCCcCCCCCCccccCCC--CCCEEEccCCcccccCCC------
Q 048417 349 TNLKVLQSVNLSNNFFTG--RIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLK--FLNHLNLSNNNLTGKIPS------ 418 (453)
Q Consensus 349 ~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~------ 418 (453)
..+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. +.+..+. +|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999986 3446667899999999999999854 3344444 899999999999876653
Q ss_pred --CcccceeecccC
Q 048417 419 --STQLQSFDASSF 430 (453)
Q Consensus 419 --~~~l~~L~~l~l 430 (453)
+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 245677776653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.49 E-value=7.4e-05 Score=62.14 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=49.3
Q ss_pred cCCCeEEEEccCC-cccC-----CCcCccCCCCCcEEEccCCccccccccc-------cccCcEEECcCCCCCCchhhhh
Q 048417 60 SASQIYVLDLSFN-QIHG-----QIPNLTNAAQLEVLSLGSNSFSIALPLI-------SSYLIELDFSNNSISGSIFHFI 126 (453)
Q Consensus 60 ~l~~L~~L~ls~~-~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------~~~L~~L~l~~~~l~~~~~~~~ 126 (453)
.-+.|++|+|+++ .+.. ....+.....|+.|+|++|.+....... -++|++|++++|.+...+...+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666653 4432 2233444456666666666665433222 1366777777777776666677
Q ss_pred hhhhcccCcccEEeccCC
Q 048417 127 CYRANELNKWQILYLSGN 144 (453)
Q Consensus 127 ~~~~~~~~~L~~L~l~~~ 144 (453)
+..+..-+.|++|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 766666666777777654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.40 E-value=0.00013 Score=60.72 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=34.5
Q ss_pred cCcEEECcCC-CCCCchhhhhhhhhcccCcccEEeccCCCCCC----CCchhhhcCCcccEEEcccCccC
Q 048417 107 YLIELDFSNN-SISGSIFHFICYRANELNKWQILYLSGNFLQG----ELPDCWMNYQNLMILDLSNNKFT 171 (453)
Q Consensus 107 ~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~ 171 (453)
.|++|+++++ .+.......++..+..-+.|++|+|++|++.+ .+...+..-+.|++|+|++|.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4555555553 55555555555555555566666666666552 22233334455566666655554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.00 E-value=0.001 Score=51.58 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=44.5
Q ss_pred cEEEcCCccCC-CCCCccccCCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 048417 355 QSVNLSNNFFT-GRIPESVGTMRSLESIDFSLNQLSGEIPQSMSSLKFLNHLNLSNNNLTG 414 (453)
Q Consensus 355 ~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 414 (453)
..++.+++.++ ..+|..+ .++|++|+|++|+++...+..|..+++|+.|+|++|.+.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36777777775 2455433 3469999999999997767788889999999999998863
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.0039 Score=48.21 Aligned_cols=57 Identities=14% Similarity=0.277 Sum_probs=44.9
Q ss_pred cEEecCCCcCC-CcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCCcCC
Q 048417 331 RIIDFSKNNFS-GKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLNQLS 389 (453)
Q Consensus 331 ~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 389 (453)
..++.++++++ ..+|..+. ++|+.|+|++|.++...+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57888888886 24554433 57999999999999555577888999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.25 E-value=3 Score=29.96 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=27.1
Q ss_pred cCCCCCCccccCCCcccEEEcCCCcccccchhhHhhcCCCeEEEEccCC
Q 048417 24 HLGSRFPSWLYSQKHLNYLDLSYSGIIGTIPNIFWSSASQIYVLDLSFN 72 (453)
Q Consensus 24 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~ 72 (453)
.++.+...+|.+|.+|+.+.|-.+ + ..+....|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-I-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-S-SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-h-heEcHHHHhccCCccEEEEcCC
Confidence 344555566667777777666543 2 3344444466677776666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.60 E-value=14 Score=26.33 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=28.0
Q ss_pred CCCcCCccccCCCCCcEEEcCCccCCCCCCccccCCCCCCEEEcCCC
Q 048417 340 FSGKIPLEVTNLKVLQSVNLSNNFFTGRIPESVGTMRSLESIDFSLN 386 (453)
Q Consensus 340 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 386 (453)
++.+-..+|..|.+|+++.|..+ ++.....+|.+|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33344456667777777777654 33234456777777777777654
Done!