Query 048418
Match_columns 798
No_of_seqs 540 out of 4453
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.5E-78 7.6E-83 706.3 27.1 660 1-699 1-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.8E-57 1.7E-61 555.5 35.1 521 157-724 182-836 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 6.1E-32 1.3E-36 286.9 4.2 184 164-357 1-283 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.4E-27 3.1E-32 295.5 18.0 362 417-795 92-491 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.3E-27 2.9E-32 295.7 16.4 343 441-796 159-540 (968)
6 KOG0444 Cytoskeletal regulator 99.9 1.4E-26 3E-31 245.7 -5.3 294 417-725 77-374 (1255)
7 KOG4194 Membrane glycoprotein 99.9 1.3E-24 2.8E-29 229.9 4.0 337 417-768 77-441 (873)
8 KOG0444 Cytoskeletal regulator 99.9 1.1E-24 2.3E-29 231.4 -8.3 319 417-760 54-380 (1255)
9 KOG4194 Membrane glycoprotein 99.8 1.7E-22 3.6E-27 214.0 -1.3 312 447-768 79-418 (873)
10 PLN03210 Resistant to P. syrin 99.8 2.1E-19 4.5E-24 223.3 17.4 264 447-723 590-903 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 9.6E-23 2.1E-27 207.2 -11.4 313 440-768 108-530 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 3.5E-22 7.6E-27 203.1 -11.0 318 417-755 113-541 (565)
13 KOG0618 Serine/threonine phosp 99.8 1.9E-20 4.1E-25 209.0 -4.4 329 418-766 45-500 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 1.4E-16 3E-21 184.3 9.0 262 449-762 204-465 (788)
15 KOG0618 Serine/threonine phosp 99.6 7.1E-17 1.5E-21 180.7 -3.8 90 440-530 39-128 (1081)
16 PRK15370 E3 ubiquitin-protein 99.6 3.4E-15 7.4E-20 173.9 7.4 224 447-725 200-427 (754)
17 PRK15370 E3 ubiquitin-protein 99.5 1.3E-14 2.9E-19 169.1 9.1 249 447-755 179-428 (754)
18 PRK15387 E3 ubiquitin-protein 99.5 4E-14 8.7E-19 164.0 11.6 135 563-725 323-457 (788)
19 KOG0617 Ras suppressor protein 99.5 6.3E-16 1.4E-20 140.4 -5.5 152 443-599 30-184 (264)
20 KOG4237 Extracellular matrix p 99.4 1.5E-14 3.3E-19 147.9 0.4 114 412-529 61-177 (498)
21 cd00116 LRR_RI Leucine-rich re 99.4 2.6E-14 5.7E-19 154.1 -1.3 89 439-528 16-120 (319)
22 KOG4237 Extracellular matrix p 99.4 4E-14 8.7E-19 144.9 -0.2 251 448-701 69-358 (498)
23 cd00116 LRR_RI Leucine-rich re 99.4 3.7E-14 8E-19 152.9 -1.9 281 450-753 2-318 (319)
24 KOG0617 Ras suppressor protein 99.4 6.2E-15 1.4E-19 134.0 -6.9 159 464-654 28-187 (264)
25 KOG4658 Apoptotic ATPase [Sign 99.3 6.1E-12 1.3E-16 149.2 7.3 239 444-696 543-801 (889)
26 KOG3207 Beta-tubulin folding c 98.9 2.6E-10 5.7E-15 118.9 2.4 135 561-702 196-339 (505)
27 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.5E-14 104.7 4.4 129 443-595 16-147 (175)
28 KOG3207 Beta-tubulin folding c 98.9 3.1E-10 6.6E-15 118.4 -0.8 107 417-526 120-232 (505)
29 KOG1909 Ran GTPase-activating 98.9 2.2E-10 4.7E-15 116.5 -1.9 253 438-701 22-310 (382)
30 KOG4341 F-box protein containi 98.8 3.6E-10 7.7E-15 117.3 -2.1 303 419-749 139-459 (483)
31 KOG0532 Leucine-rich repeat (L 98.8 3.1E-10 6.8E-15 121.8 -3.9 153 439-600 91-246 (722)
32 KOG1259 Nischarin, modulator o 98.8 1.2E-09 2.6E-14 108.4 0.4 60 615-676 351-410 (490)
33 COG4886 Leucine-rich repeat (L 98.8 6.1E-09 1.3E-13 115.8 5.5 87 442-529 112-199 (394)
34 KOG1259 Nischarin, modulator o 98.7 6.3E-09 1.4E-13 103.3 2.2 129 558-702 280-412 (490)
35 PF14580 LRR_9: Leucine-rich r 98.7 9.4E-09 2E-13 98.4 3.2 108 417-530 18-127 (175)
36 COG4886 Leucine-rich repeat (L 98.7 1.2E-08 2.5E-13 113.6 4.3 192 450-677 97-289 (394)
37 KOG2120 SCF ubiquitin ligase, 98.6 1.5E-09 3.1E-14 107.9 -3.7 83 446-529 185-273 (419)
38 KOG1909 Ran GTPase-activating 98.6 8.1E-09 1.8E-13 105.2 1.4 241 417-677 29-310 (382)
39 KOG2120 SCF ubiquitin ligase, 98.6 1.9E-09 4.1E-14 107.1 -4.3 40 558-597 230-269 (419)
40 KOG4341 F-box protein containi 98.6 3.9E-09 8.5E-14 109.7 -3.3 283 446-755 138-439 (483)
41 KOG0532 Leucine-rich repeat (L 98.5 5.2E-09 1.1E-13 112.6 -3.3 167 417-597 97-269 (722)
42 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.4E-12 74.6 3.2 58 470-527 2-60 (61)
43 KOG2982 Uncharacterized conser 98.4 3.2E-08 7E-13 98.5 -0.7 81 615-695 198-285 (418)
44 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.9E-12 72.9 3.8 60 446-505 1-61 (61)
45 PLN03150 hypothetical protein; 98.3 1.4E-06 3.1E-11 101.8 8.2 86 447-534 419-507 (623)
46 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.3E-12 104.0 -2.1 240 444-724 70-316 (414)
47 COG5238 RNA1 Ran GTPase-activa 98.1 2.9E-07 6.2E-12 90.7 -3.3 248 443-701 27-315 (388)
48 cd00009 AAA The AAA+ (ATPases 98.0 1.9E-05 4.1E-10 74.0 8.8 93 162-256 1-131 (151)
49 PLN03150 hypothetical protein; 98.0 5.3E-06 1.2E-10 97.0 5.6 107 617-724 419-526 (623)
50 PF05729 NACHT: NACHT domain 98.0 7.3E-06 1.6E-10 78.8 5.5 75 183-257 1-132 (166)
51 KOG0531 Protein phosphatase 1, 97.9 1.2E-06 2.6E-11 97.8 -1.3 223 442-703 91-319 (414)
52 KOG2982 Uncharacterized conser 97.9 2E-06 4.4E-11 85.9 0.4 225 447-721 46-287 (418)
53 KOG1859 Leucine-rich repeat pr 97.9 5.8E-07 1.3E-11 99.5 -4.5 57 618-676 234-290 (1096)
54 KOG3665 ZYG-1-like serine/thre 97.8 9.1E-06 2E-10 94.8 3.4 109 417-529 121-233 (699)
55 PF13173 AAA_14: AAA domain 97.8 2E-05 4.3E-10 72.4 5.0 76 183-258 3-102 (128)
56 KOG3665 ZYG-1-like serine/thre 97.8 1.1E-05 2.4E-10 94.1 4.1 106 445-573 121-231 (699)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 56.9 3.6 38 470-508 2-39 (44)
58 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.6E-10 57.3 3.2 41 446-486 1-41 (44)
59 PRK15386 type III secretion pr 97.8 6.7E-05 1.4E-09 80.8 8.1 74 442-527 48-123 (426)
60 PRK06893 DNA replication initi 97.7 5.3E-05 1.1E-09 77.1 6.2 72 182-255 39-134 (229)
61 PRK15386 type III secretion pr 97.6 0.00023 5E-09 76.8 9.4 56 465-526 48-104 (426)
62 PRK00411 cdc6 cell division co 97.6 0.00015 3.3E-09 80.6 8.3 49 157-205 28-78 (394)
63 PRK13342 recombination factor 97.5 0.00015 3.2E-09 80.7 7.0 86 159-251 12-125 (413)
64 TIGR01242 26Sp45 26S proteasom 97.5 0.00019 4E-09 78.7 6.5 51 155-205 118-179 (364)
65 KOG1859 Leucine-rich repeat pr 97.5 6.2E-06 1.4E-10 91.7 -5.0 108 438-548 179-287 (1096)
66 PRK09376 rho transcription ter 97.5 9.2E-05 2E-09 78.9 3.8 34 183-217 170-203 (416)
67 PRK05564 DNA polymerase III su 97.4 0.00056 1.2E-08 73.3 9.7 97 159-256 4-134 (313)
68 KOG4579 Leucine-rich repeat (L 97.4 2.1E-05 4.6E-10 70.0 -1.2 62 467-528 51-112 (177)
69 KOG1947 Leucine rich repeat pr 97.4 2.9E-05 6.2E-10 88.8 -0.8 241 438-724 180-438 (482)
70 cd01128 rho_factor Transcripti 97.4 0.00019 4.1E-09 73.4 4.7 35 182-217 16-50 (249)
71 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.00034 7.4E-09 71.2 6.0 88 164-255 22-133 (226)
72 COG5238 RNA1 Ran GTPase-activa 97.3 0.00014 3E-09 72.2 2.9 240 417-676 29-314 (388)
73 TIGR00635 ruvB Holliday juncti 97.3 0.00031 6.7E-09 75.1 5.8 47 159-205 4-53 (305)
74 PF13191 AAA_16: AAA ATPase do 97.3 0.0002 4.3E-09 70.2 3.4 46 160-205 1-47 (185)
75 TIGR03015 pepcterm_ATPase puta 97.2 0.001 2.2E-08 69.7 8.6 37 169-205 29-66 (269)
76 PRK13341 recombination factor 97.2 0.00083 1.8E-08 79.0 8.5 89 158-253 27-144 (725)
77 KOG4579 Leucine-rich repeat (L 97.2 9.8E-05 2.1E-09 65.9 0.3 85 443-528 50-135 (177)
78 PRK00080 ruvB Holliday junctio 97.2 0.00051 1.1E-08 74.1 5.9 49 157-205 23-74 (328)
79 PRK04195 replication factor C 97.2 0.00075 1.6E-08 76.8 7.4 48 158-205 13-62 (482)
80 PRK08727 hypothetical protein; 97.2 0.00072 1.6E-08 69.0 6.5 91 160-254 21-135 (233)
81 PRK14963 DNA polymerase III su 97.1 0.0013 2.8E-08 74.4 8.4 95 158-253 13-154 (504)
82 PRK11331 5-methylcytosine-spec 97.1 0.0015 3.2E-08 71.5 8.1 44 158-205 174-217 (459)
83 TIGR02903 spore_lon_C ATP-depe 97.1 0.0056 1.2E-07 71.4 13.5 46 158-205 153-198 (615)
84 PRK06620 hypothetical protein; 97.1 0.0016 3.5E-08 65.3 7.8 98 157-255 15-123 (214)
85 PHA02544 44 clamp loader, smal 97.1 0.0016 3.5E-08 70.0 8.2 96 157-255 19-141 (316)
86 PRK05642 DNA replication initi 97.0 0.0015 3.3E-08 66.6 6.6 72 182-255 45-140 (234)
87 PF01637 Arch_ATPase: Archaeal 96.9 0.00055 1.2E-08 69.7 3.3 43 161-205 1-43 (234)
88 PRK09087 hypothetical protein; 96.9 0.0024 5.1E-08 64.7 7.8 74 182-255 44-127 (226)
89 PRK12402 replication factor C 96.9 0.002 4.2E-08 70.0 7.7 45 158-204 14-58 (337)
90 PRK00440 rfc replication facto 96.9 0.0033 7.1E-08 67.6 9.4 95 158-254 16-141 (319)
91 PRK10536 hypothetical protein; 96.9 0.0026 5.5E-08 64.5 7.8 45 157-205 53-97 (262)
92 PRK08084 DNA replication initi 96.9 0.0016 3.4E-08 66.6 6.3 96 158-255 22-141 (235)
93 KOG1644 U2-associated snRNP A' 96.9 0.00076 1.7E-08 64.4 3.6 56 471-528 44-100 (233)
94 PLN03025 replication factor C 96.9 0.0036 7.8E-08 67.2 9.0 94 158-254 12-138 (319)
95 KOG1947 Leucine rich repeat pr 96.9 0.00011 2.4E-09 84.0 -2.9 238 468-754 187-439 (482)
96 COG0466 Lon ATP-dependent Lon 96.9 0.015 3.3E-07 66.0 13.8 55 156-212 320-378 (782)
97 PRK08118 topology modulation p 96.9 0.00066 1.4E-08 65.3 2.8 35 183-217 2-37 (167)
98 PRK14961 DNA polymerase III su 96.8 0.0046 1E-07 67.6 9.5 96 158-254 15-158 (363)
99 PRK03992 proteasome-activating 96.8 0.0024 5.1E-08 70.4 7.1 50 156-205 128-188 (389)
100 PRK07003 DNA polymerase III su 96.8 0.0032 7E-08 72.7 8.1 98 158-256 15-160 (830)
101 COG2256 MGS1 ATPase related to 96.8 0.0025 5.5E-08 67.4 6.4 70 182-256 48-144 (436)
102 PTZ00202 tuzin; Provisional 96.8 0.0024 5.1E-08 68.8 6.1 54 152-205 255-309 (550)
103 PF12061 DUF3542: Protein of u 96.7 0.0018 3.8E-08 65.6 4.7 106 3-120 296-401 (402)
104 PRK14962 DNA polymerase III su 96.7 0.0048 1.1E-07 69.3 8.8 46 158-204 13-58 (472)
105 PRK08903 DnaA regulatory inact 96.7 0.0034 7.3E-08 63.9 6.7 44 162-205 22-65 (227)
106 PF02562 PhoH: PhoH-like prote 96.7 0.0029 6.4E-08 62.2 5.9 51 163-217 4-54 (205)
107 PF00910 RNA_helicase: RNA hel 96.7 0.0031 6.8E-08 55.7 5.5 43 185-229 1-61 (107)
108 TIGR02881 spore_V_K stage V sp 96.7 0.0049 1.1E-07 64.1 7.7 45 160-204 7-64 (261)
109 PRK14955 DNA polymerase III su 96.6 0.0067 1.4E-07 67.2 9.1 94 158-252 15-164 (397)
110 COG2909 MalT ATP-dependent tra 96.6 0.0052 1.1E-07 70.9 8.1 221 168-407 24-340 (894)
111 KOG2004 Mitochondrial ATP-depe 96.6 0.0071 1.5E-07 68.2 8.7 49 156-204 408-460 (906)
112 TIGR02928 orc1/cdc6 family rep 96.6 0.0026 5.7E-08 69.9 5.4 48 158-205 14-63 (365)
113 PF05496 RuvB_N: Holliday junc 96.6 0.0032 6.9E-08 62.1 5.3 71 157-229 22-113 (233)
114 PRK14957 DNA polymerase III su 96.5 0.0089 1.9E-07 68.0 9.3 96 158-254 15-158 (546)
115 PRK14960 DNA polymerase III su 96.5 0.0086 1.9E-07 68.5 8.9 97 158-255 14-158 (702)
116 TIGR02397 dnaX_nterm DNA polym 96.5 0.011 2.3E-07 64.7 9.6 97 158-255 13-157 (355)
117 PF13401 AAA_22: AAA domain; P 96.5 0.0053 1.1E-07 56.3 6.0 24 182-205 4-27 (131)
118 PRK06645 DNA polymerase III su 96.5 0.0065 1.4E-07 68.6 7.8 94 158-252 20-165 (507)
119 PF13207 AAA_17: AAA domain; P 96.5 0.0018 4E-08 58.5 2.7 21 184-204 1-21 (121)
120 PF00004 AAA: ATPase family as 96.5 0.0064 1.4E-07 55.6 6.5 21 185-205 1-21 (132)
121 CHL00181 cbbX CbbX; Provisiona 96.5 0.0093 2E-07 62.7 8.4 46 159-204 23-81 (287)
122 PF05673 DUF815: Protein of un 96.5 0.011 2.4E-07 59.3 8.3 98 154-255 22-150 (249)
123 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0025 5.3E-08 67.9 4.0 46 160-205 52-101 (361)
124 KOG1644 U2-associated snRNP A' 96.5 0.0045 9.7E-08 59.3 5.2 84 445-529 41-126 (233)
125 PF00308 Bac_DnaA: Bacterial d 96.4 0.0036 7.9E-08 63.1 5.0 93 160-254 10-139 (219)
126 PRK04841 transcriptional regul 96.4 0.0079 1.7E-07 74.7 9.0 73 318-405 260-332 (903)
127 TIGR00767 rho transcription te 96.4 0.0029 6.3E-08 68.1 4.4 35 182-217 168-202 (415)
128 PRK08116 hypothetical protein; 96.4 0.0027 5.9E-08 66.0 4.1 23 183-205 115-137 (268)
129 PRK12377 putative replication 96.4 0.0048 1E-07 63.1 5.4 24 182-205 101-124 (248)
130 PRK08691 DNA polymerase III su 96.4 0.012 2.7E-07 67.8 9.3 46 158-204 15-60 (709)
131 KOG2739 Leucine-rich acidic nu 96.4 0.0011 2.4E-08 66.0 0.8 89 440-530 37-130 (260)
132 PF04665 Pox_A32: Poxvirus A32 96.3 0.0043 9.4E-08 62.5 4.5 33 183-217 14-46 (241)
133 COG1618 Predicted nucleotide k 96.3 0.0022 4.7E-08 59.2 2.0 24 182-205 5-28 (179)
134 PRK14951 DNA polymerase III su 96.3 0.014 3.1E-07 67.2 9.1 96 158-254 15-163 (618)
135 PRK10865 protein disaggregatio 96.3 0.0068 1.5E-07 73.4 6.8 45 159-205 178-222 (857)
136 PTZ00454 26S protease regulato 96.3 0.01 2.2E-07 65.2 7.5 50 156-205 142-202 (398)
137 PRK05896 DNA polymerase III su 96.3 0.011 2.4E-07 67.4 8.0 47 157-204 14-60 (605)
138 smart00382 AAA ATPases associa 96.2 0.0097 2.1E-07 54.8 6.4 23 183-205 3-25 (148)
139 PRK12323 DNA polymerase III su 96.2 0.019 4E-07 65.7 9.3 46 158-204 15-60 (700)
140 TIGR02880 cbbX_cfxQ probable R 96.2 0.013 2.8E-07 61.6 7.7 46 159-204 22-80 (284)
141 KOG2739 Leucine-rich acidic nu 96.2 0.0015 3.2E-08 65.3 0.4 67 461-529 35-104 (260)
142 PRK14956 DNA polymerase III su 96.2 0.016 3.4E-07 64.4 8.4 46 158-204 17-62 (484)
143 PRK14964 DNA polymerase III su 96.2 0.016 3.4E-07 65.1 8.5 95 158-253 12-154 (491)
144 PRK14970 DNA polymerase III su 96.2 0.019 4.2E-07 63.0 9.2 46 158-204 16-61 (367)
145 PRK14949 DNA polymerase III su 96.1 0.018 3.8E-07 68.1 9.0 97 158-255 15-159 (944)
146 COG0542 clpA ATP-binding subun 96.1 0.21 4.5E-06 58.6 17.6 85 158-242 490-620 (786)
147 PRK08181 transposase; Validate 96.1 0.0046 9.9E-08 64.0 3.7 22 183-204 107-128 (269)
148 PRK06696 uridine kinase; Valid 96.1 0.0077 1.7E-07 61.1 5.1 41 164-204 3-44 (223)
149 TIGR02639 ClpA ATP-dependent C 96.1 0.0076 1.6E-07 72.2 5.8 44 159-204 182-225 (731)
150 PRK07667 uridine kinase; Provi 96.0 0.0077 1.7E-07 59.5 4.7 37 168-204 3-39 (193)
151 PRK06526 transposase; Provisio 96.0 0.0053 1.1E-07 63.2 3.4 24 182-205 98-121 (254)
152 COG1373 Predicted ATPase (AAA+ 96.0 0.017 3.7E-07 63.7 7.7 75 184-259 39-135 (398)
153 PRK15455 PrkA family serine pr 96.0 0.0074 1.6E-07 67.6 4.7 46 159-204 76-125 (644)
154 PRK09183 transposase/IS protei 96.0 0.0056 1.2E-07 63.4 3.6 22 183-204 103-124 (259)
155 PRK14958 DNA polymerase III su 95.9 0.023 5E-07 64.6 8.6 96 158-254 15-158 (509)
156 KOG2028 ATPase related to the 95.9 0.015 3.2E-07 60.5 6.2 73 181-256 161-262 (554)
157 PRK14969 DNA polymerase III su 95.9 0.03 6.5E-07 64.1 9.5 96 158-254 15-158 (527)
158 PRK07940 DNA polymerase III su 95.9 0.028 6E-07 61.7 8.8 46 159-204 5-58 (394)
159 PF14532 Sigma54_activ_2: Sigm 95.9 0.0073 1.6E-07 56.1 3.7 95 162-256 1-111 (138)
160 PRK07994 DNA polymerase III su 95.9 0.023 5.1E-07 65.7 8.5 98 157-255 14-159 (647)
161 PRK06921 hypothetical protein; 95.9 0.0083 1.8E-07 62.3 4.4 24 182-205 117-140 (266)
162 cd01133 F1-ATPase_beta F1 ATP 95.9 0.0079 1.7E-07 61.9 4.1 34 182-217 69-102 (274)
163 PF07728 AAA_5: AAA domain (dy 95.9 0.0074 1.6E-07 56.1 3.6 20 185-204 2-21 (139)
164 KOG2123 Uncharacterized conser 95.9 0.0018 3.9E-08 64.8 -0.6 98 417-522 18-123 (388)
165 CHL00095 clpC Clp protease ATP 95.8 0.83 1.8E-05 55.7 21.9 47 158-204 508-561 (821)
166 COG1875 NYN ribonuclease and A 95.8 0.017 3.7E-07 60.4 6.3 38 163-202 228-265 (436)
167 PRK14954 DNA polymerase III su 95.8 0.032 6.9E-07 64.6 9.3 46 158-204 15-60 (620)
168 TIGR03346 chaperone_ClpB ATP-d 95.8 0.013 2.8E-07 71.3 6.4 45 159-205 173-217 (852)
169 TIGR00678 holB DNA polymerase 95.8 0.042 9.1E-07 54.0 8.9 84 170-254 3-135 (188)
170 PRK10787 DNA-binding ATP-depen 95.8 0.085 1.8E-06 63.2 13.0 47 158-204 321-371 (784)
171 PRK11034 clpA ATP-dependent Cl 95.8 0.0099 2.1E-07 70.5 4.9 44 159-204 186-229 (758)
172 PRK06835 DNA replication prote 95.8 0.014 2.9E-07 62.5 5.5 23 183-205 184-206 (329)
173 KOG0989 Replication factor C, 95.7 0.034 7.3E-07 57.0 7.7 97 156-254 33-168 (346)
174 PRK00149 dnaA chromosomal repl 95.7 0.021 4.6E-07 64.4 7.1 47 159-205 123-171 (450)
175 PRK14952 DNA polymerase III su 95.7 0.043 9.3E-07 63.2 9.4 95 158-253 12-156 (584)
176 PRK07261 topology modulation p 95.6 0.0079 1.7E-07 58.1 2.9 22 184-205 2-23 (171)
177 PRK08939 primosomal protein Dn 95.6 0.018 4E-07 61.0 5.8 91 163-254 135-260 (306)
178 PRK07764 DNA polymerase III su 95.6 0.037 8.1E-07 66.3 8.9 95 158-253 14-158 (824)
179 COG1474 CDC6 Cdc6-related prot 95.6 0.021 4.6E-07 62.0 6.2 47 159-205 17-65 (366)
180 TIGR00362 DnaA chromosomal rep 95.5 0.022 4.7E-07 63.5 6.3 47 159-205 111-159 (405)
181 TIGR02639 ClpA ATP-dependent C 95.5 0.039 8.5E-07 66.1 8.7 47 158-204 453-506 (731)
182 COG3899 Predicted ATPase [Gene 95.5 0.019 4.1E-07 69.5 5.9 45 160-204 1-46 (849)
183 KOG2123 Uncharacterized conser 95.5 0.0015 3.3E-08 65.3 -2.8 82 443-527 16-99 (388)
184 PRK09270 nucleoside triphospha 95.5 0.019 4.2E-07 58.4 5.1 26 179-204 30-55 (229)
185 COG0572 Udk Uridine kinase [Nu 95.4 0.016 3.6E-07 57.0 4.2 41 180-227 6-46 (218)
186 TIGR00763 lon ATP-dependent pr 95.4 0.044 9.6E-07 66.1 8.7 48 158-205 319-370 (775)
187 PRK10865 protein disaggregatio 95.4 0.047 1E-06 66.4 8.9 47 158-204 567-620 (857)
188 COG2255 RuvB Holliday junction 95.4 0.015 3.2E-07 58.9 3.7 49 157-205 24-75 (332)
189 PRK07952 DNA replication prote 95.4 0.026 5.6E-07 57.6 5.6 39 167-205 84-122 (244)
190 TIGR03345 VI_ClpV1 type VI sec 95.3 0.042 9.1E-07 66.6 8.2 47 158-204 565-618 (852)
191 PF01695 IstB_IS21: IstB-like 95.3 0.0055 1.2E-07 59.5 0.6 24 182-205 47-70 (178)
192 PRK06305 DNA polymerase III su 95.3 0.06 1.3E-06 60.4 8.9 46 158-204 16-61 (451)
193 PF13238 AAA_18: AAA domain; P 95.3 0.011 2.4E-07 53.9 2.5 21 185-205 1-21 (129)
194 PRK09111 DNA polymerase III su 95.3 0.056 1.2E-06 62.5 8.8 48 156-204 21-68 (598)
195 PRK14086 dnaA chromosomal repl 95.3 0.022 4.9E-07 65.0 5.3 46 160-205 290-337 (617)
196 PRK14088 dnaA chromosomal repl 95.2 0.034 7.3E-07 62.3 6.5 47 158-205 105-153 (440)
197 PF00485 PRK: Phosphoribulokin 95.2 0.012 2.7E-07 58.1 2.7 21 184-204 1-21 (194)
198 PRK05480 uridine/cytidine kina 95.2 0.015 3.2E-07 58.3 3.3 24 181-204 5-28 (209)
199 PRK14722 flhF flagellar biosyn 95.2 0.34 7.5E-06 52.5 13.8 23 182-204 137-159 (374)
200 TIGR03346 chaperone_ClpB ATP-d 95.2 0.067 1.5E-06 65.2 9.5 47 158-204 564-617 (852)
201 PRK14950 DNA polymerase III su 95.2 0.072 1.6E-06 62.1 9.3 46 158-204 15-60 (585)
202 TIGR00235 udk uridine kinase. 95.2 0.016 3.4E-07 58.0 3.4 25 181-205 5-29 (207)
203 TIGR03689 pup_AAA proteasome A 95.2 0.03 6.5E-07 63.1 5.9 51 155-205 178-239 (512)
204 KOG0734 AAA+-type ATPase conta 95.2 0.06 1.3E-06 59.0 7.7 72 157-228 302-407 (752)
205 PRK08233 hypothetical protein; 95.2 0.016 3.5E-07 56.5 3.3 23 182-204 3-25 (182)
206 TIGR01241 FtsH_fam ATP-depende 95.1 0.045 9.7E-07 62.6 7.1 51 155-205 51-111 (495)
207 TIGR02640 gas_vesic_GvpN gas v 95.1 0.067 1.5E-06 55.6 7.8 35 166-204 9-43 (262)
208 PRK14965 DNA polymerase III su 95.1 0.082 1.8E-06 61.3 9.2 47 157-204 14-60 (576)
209 PRK08451 DNA polymerase III su 95.0 0.11 2.3E-06 59.1 9.6 96 158-254 13-156 (535)
210 PRK14971 DNA polymerase III su 95.0 0.092 2E-06 61.2 9.4 99 158-257 16-164 (614)
211 CHL00095 clpC Clp protease ATP 94.9 0.023 4.9E-07 69.0 4.3 45 159-205 179-223 (821)
212 PRK13230 nitrogenase reductase 94.9 0.022 4.8E-07 59.9 3.8 23 183-205 2-24 (279)
213 PF13604 AAA_30: AAA domain; P 94.9 0.049 1.1E-06 53.9 5.9 82 168-254 6-130 (196)
214 CHL00176 ftsH cell division pr 94.9 0.046 1E-06 63.7 6.6 49 157-205 181-239 (638)
215 PRK06547 hypothetical protein; 94.9 0.035 7.5E-07 53.6 4.7 26 180-205 13-38 (172)
216 KOG1532 GTPase XAB1, interacts 94.9 0.03 6.4E-07 56.2 4.2 62 180-246 17-90 (366)
217 PRK14959 DNA polymerase III su 94.9 0.085 1.8E-06 60.7 8.5 47 158-205 15-61 (624)
218 PRK06647 DNA polymerase III su 94.9 0.12 2.5E-06 59.6 9.7 47 158-205 15-61 (563)
219 PRK11034 clpA ATP-dependent Cl 94.8 0.079 1.7E-06 63.0 8.3 47 158-204 457-510 (758)
220 PRK14953 DNA polymerase III su 94.8 0.087 1.9E-06 59.6 8.3 46 158-204 15-60 (486)
221 cd02019 NK Nucleoside/nucleoti 94.8 0.021 4.5E-07 45.8 2.4 22 184-205 1-22 (69)
222 PRK07471 DNA polymerase III su 94.8 0.11 2.4E-06 56.5 8.7 47 157-204 17-63 (365)
223 COG1484 DnaC DNA replication p 94.8 0.032 7E-07 57.4 4.4 35 181-216 104-138 (254)
224 PRK14087 dnaA chromosomal repl 94.7 0.045 9.8E-07 61.4 5.8 46 159-204 116-163 (450)
225 PHA00729 NTP-binding motif con 94.7 0.039 8.6E-07 55.0 4.7 34 170-205 7-40 (226)
226 TIGR03345 VI_ClpV1 type VI sec 94.7 0.03 6.6E-07 67.8 4.6 45 158-204 186-230 (852)
227 PRK06762 hypothetical protein; 94.6 0.026 5.7E-07 54.2 3.1 24 182-205 2-25 (166)
228 PRK09112 DNA polymerase III su 94.6 0.16 3.5E-06 54.9 9.3 48 156-204 20-67 (351)
229 PRK11889 flhF flagellar biosyn 94.5 0.078 1.7E-06 57.2 6.7 51 181-237 240-290 (436)
230 PF05659 RPW8: Arabidopsis bro 94.5 0.32 6.8E-06 45.3 9.9 106 2-124 8-115 (147)
231 PTZ00301 uridine kinase; Provi 94.5 0.028 6E-07 56.1 3.2 23 182-204 3-25 (210)
232 COG1222 RPT1 ATP-dependent 26S 94.5 0.089 1.9E-06 55.1 6.8 55 156-212 148-213 (406)
233 PRK05541 adenylylsulfate kinas 94.5 0.03 6.5E-07 54.4 3.3 31 181-213 6-36 (176)
234 COG0593 DnaA ATPase involved i 94.5 0.073 1.6E-06 57.9 6.4 95 158-254 87-217 (408)
235 PRK05563 DNA polymerase III su 94.5 0.19 4.1E-06 58.1 10.1 46 158-204 15-60 (559)
236 COG1223 Predicted ATPase (AAA+ 94.4 0.051 1.1E-06 54.1 4.6 52 155-206 117-175 (368)
237 PRK13232 nifH nitrogenase redu 94.4 0.029 6.3E-07 58.8 3.1 22 183-204 2-23 (273)
238 cd02117 NifH_like This family 94.4 0.03 6.5E-07 56.2 3.0 22 183-204 1-22 (212)
239 COG1428 Deoxynucleoside kinase 94.4 0.028 6.2E-07 54.7 2.6 25 182-206 4-28 (216)
240 PRK03839 putative kinase; Prov 94.3 0.03 6.6E-07 54.6 2.9 22 184-205 2-23 (180)
241 PRK04040 adenylate kinase; Pro 94.3 0.032 7E-07 54.7 2.9 23 182-204 2-24 (188)
242 PF13671 AAA_33: AAA domain; P 94.3 0.033 7.2E-07 51.8 2.9 21 184-204 1-21 (143)
243 PF00560 LRR_1: Leucine Rich R 94.3 0.02 4.3E-07 34.4 0.9 17 471-487 2-18 (22)
244 PTZ00112 origin recognition co 94.2 0.064 1.4E-06 62.9 5.6 49 157-205 753-804 (1164)
245 cd02023 UMPK Uridine monophosp 94.2 0.027 5.9E-07 55.9 2.4 21 184-204 1-21 (198)
246 PRK06995 flhF flagellar biosyn 94.2 0.58 1.3E-05 52.5 12.9 51 182-236 256-306 (484)
247 PRK13236 nitrogenase reductase 94.2 0.042 9.1E-07 58.2 3.9 25 180-204 4-28 (296)
248 PRK12422 chromosomal replicati 94.2 0.038 8.2E-07 61.8 3.7 24 182-205 141-164 (445)
249 TIGR01360 aden_kin_iso1 adenyl 94.2 0.035 7.6E-07 54.4 3.2 24 181-204 2-25 (188)
250 cd02025 PanK Pantothenate kina 94.2 0.027 5.7E-07 56.8 2.2 21 184-204 1-21 (220)
251 PF00560 LRR_1: Leucine Rich R 94.2 0.026 5.7E-07 33.8 1.3 22 447-468 1-22 (22)
252 PLN02318 phosphoribulokinase/u 94.2 0.056 1.2E-06 61.1 4.9 35 170-204 53-87 (656)
253 TIGR00150 HI0065_YjeE ATPase, 94.1 0.072 1.6E-06 48.6 4.7 39 167-205 7-45 (133)
254 PRK13235 nifH nitrogenase redu 94.1 0.037 7.9E-07 58.1 3.1 22 183-204 2-23 (274)
255 PRK07133 DNA polymerase III su 94.1 0.16 3.4E-06 59.5 8.4 46 158-204 17-62 (725)
256 TIGR01281 DPOR_bchL light-inde 94.0 0.042 9.2E-07 57.4 3.4 21 184-204 2-22 (268)
257 COG2607 Predicted ATPase (AAA+ 94.0 0.31 6.6E-06 48.4 8.9 97 156-255 57-183 (287)
258 PF13306 LRR_5: Leucine rich r 94.0 0.088 1.9E-06 47.9 5.1 83 440-525 6-90 (129)
259 TIGR01287 nifH nitrogenase iro 93.9 0.045 9.7E-07 57.5 3.4 22 183-204 1-22 (275)
260 cd02024 NRK1 Nicotinamide ribo 93.9 0.036 7.7E-07 54.1 2.3 37 184-229 1-37 (187)
261 PRK00625 shikimate kinase; Pro 93.8 0.041 8.9E-07 53.1 2.6 21 184-204 2-22 (173)
262 TIGR01425 SRP54_euk signal rec 93.8 0.11 2.5E-06 57.1 6.4 50 181-236 99-148 (429)
263 COG0470 HolB ATPase involved i 93.8 0.2 4.3E-06 53.9 8.3 94 160-253 2-147 (325)
264 PF03205 MobB: Molybdopterin g 93.8 0.063 1.4E-06 49.8 3.7 23 183-205 1-23 (140)
265 KOG2543 Origin recognition com 93.8 0.11 2.5E-06 54.8 5.9 49 158-206 5-54 (438)
266 TIGR02858 spore_III_AA stage I 93.8 0.25 5.5E-06 51.2 8.6 87 167-257 97-231 (270)
267 TIGR00554 panK_bact pantothena 93.8 0.086 1.9E-06 55.2 5.1 25 180-204 60-84 (290)
268 KOG0729 26S proteasome regulat 93.8 0.42 9E-06 47.9 9.4 56 159-216 177-243 (435)
269 TIGR02322 phosphon_PhnN phosph 93.7 0.048 1E-06 53.1 2.9 22 183-204 2-23 (179)
270 PRK15429 formate hydrogenlyase 93.7 0.32 7E-06 58.1 10.4 48 158-205 375-422 (686)
271 PRK14948 DNA polymerase III su 93.7 0.2 4.4E-06 58.4 8.4 47 158-205 15-61 (620)
272 PTZ00361 26 proteosome regulat 93.7 0.081 1.8E-06 58.7 4.9 47 159-205 183-240 (438)
273 cd01878 HflX HflX subfamily. 93.7 0.15 3.3E-06 50.7 6.5 24 182-205 41-64 (204)
274 TIGR01817 nifA Nif-specific re 93.6 0.18 3.8E-06 58.5 7.9 50 156-205 193-242 (534)
275 cd03243 ABC_MutS_homologs The 93.6 0.078 1.7E-06 52.8 4.4 22 183-204 30-51 (202)
276 PRK00131 aroK shikimate kinase 93.6 0.051 1.1E-06 52.5 2.9 24 182-205 4-27 (175)
277 PRK10751 molybdopterin-guanine 93.6 0.063 1.4E-06 51.5 3.4 24 181-204 5-28 (173)
278 PF07726 AAA_3: ATPase family 93.6 0.038 8.3E-07 49.6 1.8 27 185-213 2-28 (131)
279 TIGR03263 guanyl_kin guanylate 93.6 0.053 1.2E-06 52.8 3.0 22 183-204 2-23 (180)
280 PF00448 SRP54: SRP54-type pro 93.6 0.12 2.6E-06 51.0 5.5 48 182-235 1-48 (196)
281 cd03281 ABC_MSH5_euk MutS5 hom 93.6 0.11 2.4E-06 52.1 5.3 22 182-203 29-50 (213)
282 PRK00889 adenylylsulfate kinas 93.6 0.059 1.3E-06 52.2 3.3 24 182-205 4-27 (175)
283 PRK05439 pantothenate kinase; 93.6 0.087 1.9E-06 55.6 4.7 26 179-204 83-108 (311)
284 PRK13531 regulatory ATPase Rav 93.6 0.078 1.7E-06 58.8 4.5 42 159-204 20-61 (498)
285 cd02040 NifH NifH gene encodes 93.5 0.06 1.3E-06 56.3 3.5 22 183-204 2-23 (270)
286 KOG0473 Leucine-rich repeat pr 93.5 0.0041 9E-08 60.7 -4.7 89 440-529 36-124 (326)
287 PRK14721 flhF flagellar biosyn 93.5 0.2 4.3E-06 55.2 7.6 23 182-204 191-213 (420)
288 PRK13185 chlL protochlorophyll 93.5 0.064 1.4E-06 56.1 3.7 22 183-204 3-24 (270)
289 cd02028 UMPK_like Uridine mono 93.5 0.048 1E-06 53.1 2.4 21 184-204 1-21 (179)
290 PF00158 Sigma54_activat: Sigm 93.4 0.069 1.5E-06 51.3 3.4 45 161-205 1-45 (168)
291 COG3640 CooC CO dehydrogenase 93.4 0.082 1.8E-06 52.2 3.8 21 184-204 2-22 (255)
292 PRK13234 nifH nitrogenase redu 93.3 0.076 1.7E-06 56.2 3.9 24 181-204 3-26 (295)
293 COG4618 ArpD ABC-type protease 93.3 0.13 2.9E-06 56.3 5.7 22 183-204 363-384 (580)
294 TIGR01359 UMP_CMP_kin_fam UMP- 93.3 0.05 1.1E-06 53.1 2.3 21 184-204 1-21 (183)
295 COG2019 AdkA Archaeal adenylat 93.3 0.069 1.5E-06 49.8 3.0 23 182-204 4-26 (189)
296 PRK03846 adenylylsulfate kinas 93.3 0.069 1.5E-06 53.0 3.3 25 180-204 22-46 (198)
297 PRK06217 hypothetical protein; 93.2 0.057 1.2E-06 52.8 2.6 22 184-205 3-24 (183)
298 PRK05703 flhF flagellar biosyn 93.2 0.39 8.5E-06 53.4 9.4 23 182-204 221-243 (424)
299 KOG0991 Replication factor C, 93.2 0.098 2.1E-06 51.3 3.9 46 157-204 25-70 (333)
300 PF13177 DNA_pol3_delta2: DNA 93.2 0.43 9.3E-06 45.5 8.4 94 163-257 1-144 (162)
301 cd02020 CMPK Cytidine monophos 93.1 0.058 1.3E-06 50.4 2.4 21 184-204 1-21 (147)
302 PRK14738 gmk guanylate kinase; 93.1 0.077 1.7E-06 53.0 3.4 30 175-204 6-35 (206)
303 PRK12724 flagellar biosynthesi 93.1 0.28 6E-06 53.7 7.7 23 182-204 223-245 (432)
304 PRK13949 shikimate kinase; Pro 93.0 0.067 1.4E-06 51.5 2.6 23 183-205 2-24 (169)
305 PRK13947 shikimate kinase; Pro 93.0 0.066 1.4E-06 51.6 2.6 21 184-204 3-23 (171)
306 PF06309 Torsin: Torsin; Inte 93.0 0.17 3.7E-06 45.3 5.0 47 159-205 25-76 (127)
307 cd02021 GntK Gluconate kinase 93.0 0.064 1.4E-06 50.5 2.4 22 184-205 1-22 (150)
308 TIGR00390 hslU ATP-dependent p 92.9 0.12 2.7E-06 56.1 4.7 48 158-205 11-70 (441)
309 cd01131 PilT Pilus retraction 92.9 0.24 5.2E-06 49.1 6.5 22 183-204 2-23 (198)
310 COG1936 Predicted nucleotide k 92.8 0.08 1.7E-06 49.8 2.7 20 184-203 2-21 (180)
311 KOG2227 Pre-initiation complex 92.8 0.21 4.6E-06 54.2 6.1 50 156-205 147-198 (529)
312 TIGR02016 BchX chlorophyllide 92.8 0.091 2E-06 55.6 3.5 22 183-204 1-22 (296)
313 PF03308 ArgK: ArgK protein; 92.8 0.14 3.1E-06 51.7 4.6 38 167-204 14-51 (266)
314 PRK00300 gmk guanylate kinase; 92.8 0.079 1.7E-06 52.8 2.9 24 182-205 5-28 (205)
315 PRK10078 ribose 1,5-bisphospho 92.7 0.087 1.9E-06 51.7 3.1 23 183-205 3-25 (186)
316 PRK00771 signal recognition pa 92.7 0.24 5.1E-06 55.1 6.7 47 181-233 94-140 (437)
317 PF08477 Miro: Miro-like prote 92.7 0.087 1.9E-06 47.1 2.9 22 185-206 2-23 (119)
318 PRK14974 cell division protein 92.7 0.28 6.1E-06 52.5 7.0 51 181-237 139-192 (336)
319 PRK05201 hslU ATP-dependent pr 92.7 0.15 3.2E-06 55.6 4.8 47 158-204 14-72 (443)
320 PF02374 ArsA_ATPase: Anion-tr 92.6 0.088 1.9E-06 55.9 3.1 22 183-204 2-23 (305)
321 cd00227 CPT Chloramphenicol (C 92.6 0.084 1.8E-06 51.2 2.8 23 183-205 3-25 (175)
322 PF08298 AAA_PrkA: PrkA AAA do 92.6 0.15 3.2E-06 54.1 4.7 47 158-204 60-110 (358)
323 PF01583 APS_kinase: Adenylyls 92.6 0.11 2.4E-06 48.9 3.3 24 182-205 2-25 (156)
324 cd00464 SK Shikimate kinase (S 92.6 0.082 1.8E-06 49.9 2.6 20 185-204 2-21 (154)
325 COG0563 Adk Adenylate kinase a 92.6 0.082 1.8E-06 51.2 2.6 22 184-205 2-23 (178)
326 PRK14723 flhF flagellar biosyn 92.6 0.41 8.8E-06 56.4 8.7 23 182-204 185-207 (767)
327 KOG0733 Nuclear AAA ATPase (VC 92.5 0.23 4.9E-06 55.6 6.1 51 155-205 186-246 (802)
328 PRK13975 thymidylate kinase; P 92.5 0.093 2E-06 51.9 3.0 23 183-205 3-25 (196)
329 PRK05057 aroK shikimate kinase 92.5 0.09 2E-06 50.8 2.8 24 182-205 4-27 (172)
330 PRK14530 adenylate kinase; Pro 92.5 0.086 1.9E-06 53.0 2.7 21 184-204 5-25 (215)
331 PRK12727 flagellar biosynthesi 92.5 0.41 8.8E-06 53.9 8.1 24 181-204 349-372 (559)
332 cd00071 GMPK Guanosine monopho 92.5 0.094 2E-06 48.5 2.7 21 184-204 1-21 (137)
333 cd02032 Bchl_like This family 92.4 0.11 2.4E-06 54.3 3.5 21 184-204 2-22 (267)
334 PF00005 ABC_tran: ABC transpo 92.3 0.1 2.2E-06 48.1 2.9 23 183-205 12-34 (137)
335 PRK09435 membrane ATPase/prote 92.3 0.19 4.2E-06 53.6 5.2 36 169-204 43-78 (332)
336 TIGR00176 mobB molybdopterin-g 92.2 0.09 1.9E-06 49.8 2.4 22 184-205 1-22 (155)
337 COG1100 GTPase SAR1 and relate 92.2 0.2 4.4E-06 50.3 5.2 23 183-205 6-28 (219)
338 TIGR00073 hypB hydrogenase acc 92.2 0.12 2.5E-06 51.8 3.3 26 180-205 20-45 (207)
339 cd00820 PEPCK_HprK Phosphoenol 92.2 0.13 2.7E-06 45.0 3.0 22 182-203 15-36 (107)
340 PLN02348 phosphoribulokinase 92.2 0.22 4.8E-06 53.8 5.4 26 179-204 46-71 (395)
341 COG1120 FepC ABC-type cobalami 92.1 0.11 2.4E-06 53.0 3.0 23 182-204 28-50 (258)
342 KOG0741 AAA+-type ATPase [Post 92.1 0.28 6E-06 53.9 6.0 53 181-237 537-618 (744)
343 TIGR00064 ftsY signal recognit 92.1 0.4 8.8E-06 49.9 7.2 25 180-204 70-94 (272)
344 CHL00195 ycf46 Ycf46; Provisio 92.1 0.33 7.2E-06 54.8 7.0 48 158-205 227-282 (489)
345 PRK10463 hydrogenase nickel in 92.1 0.25 5.3E-06 51.5 5.5 25 180-204 102-126 (290)
346 PRK13948 shikimate kinase; Pro 92.0 0.12 2.6E-06 50.3 3.0 24 181-204 9-32 (182)
347 COG1124 DppF ABC-type dipeptid 92.0 0.12 2.5E-06 51.6 2.9 23 182-204 33-55 (252)
348 COG0237 CoaE Dephospho-CoA kin 92.0 0.12 2.6E-06 51.0 3.0 23 182-204 2-24 (201)
349 TIGR01313 therm_gnt_kin carboh 92.0 0.091 2E-06 50.2 2.2 21 185-205 1-21 (163)
350 PRK12339 2-phosphoglycerate ki 92.0 0.13 2.8E-06 50.8 3.2 24 182-205 3-26 (197)
351 TIGR00750 lao LAO/AO transport 92.0 0.17 3.7E-06 53.7 4.4 37 169-205 21-57 (300)
352 COG4088 Predicted nucleotide k 92.0 0.15 3.2E-06 49.4 3.4 21 184-204 3-23 (261)
353 TIGR02030 BchI-ChlI magnesium 91.9 0.21 4.6E-06 53.6 4.9 45 158-204 3-47 (337)
354 cd02027 APSK Adenosine 5'-phos 91.8 0.11 2.4E-06 48.9 2.4 21 184-204 1-21 (149)
355 KOG3864 Uncharacterized conser 91.8 0.015 3.3E-07 55.8 -3.4 61 664-724 124-187 (221)
356 PRK12608 transcription termina 91.8 0.17 3.8E-06 54.3 4.1 36 168-204 120-155 (380)
357 COG0396 sufC Cysteine desulfur 91.7 0.27 5.8E-06 48.6 5.0 25 183-207 31-55 (251)
358 PF01078 Mg_chelatase: Magnesi 91.7 0.28 6.1E-06 48.2 5.1 43 158-204 2-44 (206)
359 TIGR03499 FlhF flagellar biosy 91.7 0.14 3.1E-06 53.7 3.4 25 181-205 193-217 (282)
360 PHA02624 large T antigen; Prov 91.7 0.33 7.2E-06 55.1 6.3 61 166-226 415-487 (647)
361 PF08433 KTI12: Chromatin asso 91.7 0.14 3E-06 53.2 3.2 23 183-205 2-24 (270)
362 KOG0735 AAA+-type ATPase [Post 91.6 0.28 6E-06 55.9 5.6 48 158-205 407-454 (952)
363 CHL00081 chlI Mg-protoporyphyr 91.6 0.17 3.8E-06 54.3 3.9 47 156-204 14-60 (350)
364 PF10662 PduV-EutP: Ethanolami 91.6 0.15 3.3E-06 47.0 2.9 23 183-205 2-24 (143)
365 cd04139 RalA_RalB RalA/RalB su 91.5 0.15 3.2E-06 48.4 3.1 22 184-205 2-23 (164)
366 PRK09825 idnK D-gluconate kina 91.5 0.14 3E-06 49.7 2.8 23 183-205 4-26 (176)
367 PF01926 MMR_HSR1: 50S ribosom 91.5 0.14 3.1E-06 45.6 2.8 21 185-205 2-22 (116)
368 PRK13946 shikimate kinase; Pro 91.5 0.13 2.9E-06 50.2 2.7 23 182-204 10-32 (184)
369 KOG0727 26S proteasome regulat 91.5 0.3 6.6E-06 48.4 5.1 49 157-205 153-212 (408)
370 COG1703 ArgK Putative periplas 91.5 0.21 4.6E-06 51.3 4.1 37 168-204 37-73 (323)
371 COG1102 Cmk Cytidylate kinase 91.4 0.13 2.7E-06 47.9 2.3 22 184-205 2-23 (179)
372 PF03266 NTPase_1: NTPase; In 91.4 0.13 2.9E-06 49.3 2.6 21 185-205 2-22 (168)
373 cd03225 ABC_cobalt_CbiO_domain 91.4 0.15 3.2E-06 51.1 3.0 24 182-205 27-50 (211)
374 PHA02774 E1; Provisional 91.4 0.36 7.8E-06 54.6 6.2 57 169-226 422-488 (613)
375 TIGR01069 mutS2 MutS2 family p 91.4 1.1 2.4E-05 53.8 10.8 29 65-93 143-171 (771)
376 PF13306 LRR_5: Leucine rich r 91.4 0.37 8E-06 43.7 5.4 100 417-525 11-112 (129)
377 PRK10416 signal recognition pa 91.4 0.17 3.6E-06 54.0 3.5 24 181-204 113-136 (318)
378 PF13521 AAA_28: AAA domain; P 91.4 0.14 2.9E-06 49.0 2.6 21 185-205 2-22 (163)
379 PRK14493 putative bifunctional 91.4 0.15 3.2E-06 53.1 3.0 22 183-204 2-23 (274)
380 PF03193 DUF258: Protein of un 91.4 0.27 5.8E-06 46.5 4.4 36 166-206 24-59 (161)
381 PRK14527 adenylate kinase; Pro 91.3 0.16 3.4E-06 50.1 3.0 24 182-205 6-29 (191)
382 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.3 0.15 3.3E-06 51.3 3.0 24 182-205 30-53 (218)
383 PRK04182 cytidylate kinase; Pr 91.3 0.15 3.2E-06 49.5 2.9 22 184-205 2-23 (180)
384 cd03229 ABC_Class3 This class 91.3 0.16 3.5E-06 49.4 3.0 23 182-204 26-48 (178)
385 CHL00072 chlL photochlorophyll 91.3 0.17 3.7E-06 53.4 3.4 20 185-204 3-22 (290)
386 cd02022 DPCK Dephospho-coenzym 91.3 0.13 2.8E-06 50.0 2.4 21 184-204 1-21 (179)
387 COG1763 MobB Molybdopterin-gua 91.3 0.14 3.1E-06 48.3 2.5 23 182-204 2-24 (161)
388 TIGR01243 CDC48 AAA family ATP 91.2 0.34 7.4E-06 58.3 6.3 50 156-205 450-510 (733)
389 COG2884 FtsE Predicted ATPase 91.2 0.37 8E-06 46.2 5.1 26 182-207 28-53 (223)
390 TIGR01243 CDC48 AAA family ATP 91.2 0.21 4.6E-06 60.1 4.6 50 156-205 175-235 (733)
391 PRK10867 signal recognition pa 91.2 0.48 1E-05 52.6 6.9 50 181-235 99-148 (433)
392 PLN02200 adenylate kinase fami 91.2 0.17 3.6E-06 51.6 3.2 24 181-204 42-65 (234)
393 TIGR02173 cyt_kin_arch cytidyl 91.2 0.16 3.4E-06 48.9 2.9 21 184-204 2-22 (171)
394 cd03116 MobB Molybdenum is an 91.2 0.18 3.9E-06 47.9 3.1 22 183-204 2-23 (159)
395 cd03222 ABC_RNaseL_inhibitor T 91.2 0.17 3.8E-06 48.9 3.1 23 182-204 25-47 (177)
396 TIGR01166 cbiO cobalt transpor 91.2 0.17 3.7E-06 49.8 3.1 23 183-205 19-41 (190)
397 cd03297 ABC_ModC_molybdenum_tr 91.1 0.18 3.9E-06 50.7 3.3 25 180-205 22-46 (214)
398 COG0194 Gmk Guanylate kinase [ 91.1 0.17 3.7E-06 48.4 2.9 25 182-206 4-28 (191)
399 cd01672 TMPK Thymidine monopho 91.1 0.16 3.4E-06 50.2 2.8 22 184-205 2-23 (200)
400 PRK05342 clpX ATP-dependent pr 91.0 0.27 5.9E-06 54.3 4.8 47 158-204 70-130 (412)
401 PRK08058 DNA polymerase III su 91.0 0.71 1.5E-05 49.7 7.9 44 160-204 6-50 (329)
402 PLN02796 D-glycerate 3-kinase 91.0 0.19 4.1E-06 53.5 3.4 42 181-227 99-140 (347)
403 PRK13768 GTPase; Provisional 91.0 0.18 3.8E-06 52.2 3.1 23 182-204 2-24 (253)
404 TIGR00960 3a0501s02 Type II (G 91.0 0.17 3.8E-06 50.8 3.1 24 182-205 29-52 (216)
405 PF13504 LRR_7: Leucine rich r 91.0 0.13 2.8E-06 28.6 1.1 15 470-484 2-16 (17)
406 PRK13695 putative NTPase; Prov 90.9 0.16 3.5E-06 49.1 2.7 22 184-205 2-23 (174)
407 cd01983 Fer4_NifH The Fer4_Nif 90.9 0.17 3.7E-06 43.0 2.5 21 184-204 1-21 (99)
408 PRK14737 gmk guanylate kinase; 90.9 0.2 4.4E-06 49.0 3.3 24 181-204 3-26 (186)
409 PRK08099 bifunctional DNA-bind 90.9 0.16 3.4E-06 56.0 2.8 24 181-204 218-241 (399)
410 COG1084 Predicted GTPase [Gene 90.8 2 4.4E-05 44.9 10.4 30 180-209 166-196 (346)
411 cd03114 ArgK-like The function 90.8 0.17 3.6E-06 47.6 2.5 21 184-204 1-21 (148)
412 PRK05537 bifunctional sulfate 90.8 0.34 7.3E-06 56.0 5.5 48 158-205 368-415 (568)
413 COG1121 ZnuC ABC-type Mn/Zn tr 90.8 0.18 3.9E-06 51.2 2.9 22 183-204 31-52 (254)
414 PRK03731 aroL shikimate kinase 90.7 0.17 3.8E-06 48.7 2.7 22 183-204 3-24 (171)
415 PRK13233 nifH nitrogenase redu 90.7 0.18 3.9E-06 52.9 3.0 22 183-204 3-24 (275)
416 cd01858 NGP_1 NGP-1. Autoanti 90.7 0.39 8.4E-06 45.6 5.0 44 163-206 82-126 (157)
417 cd03287 ABC_MSH3_euk MutS3 hom 90.7 0.31 6.8E-06 49.1 4.5 23 182-204 31-53 (222)
418 cd03238 ABC_UvrA The excision 90.7 0.2 4.3E-06 48.5 2.9 23 182-204 21-43 (176)
419 COG0703 AroK Shikimate kinase 90.7 0.18 3.9E-06 47.9 2.6 21 184-204 4-24 (172)
420 cd03261 ABC_Org_Solvent_Resist 90.7 0.19 4.2E-06 51.3 3.1 23 183-205 27-49 (235)
421 cd03259 ABC_Carb_Solutes_like 90.6 0.19 4.2E-06 50.4 3.0 23 182-204 26-48 (213)
422 cd03293 ABC_NrtD_SsuB_transpor 90.6 0.2 4.3E-06 50.6 3.1 23 183-205 31-53 (220)
423 TIGR02673 FtsE cell division A 90.6 0.2 4.3E-06 50.3 3.1 24 182-205 28-51 (214)
424 PF13504 LRR_7: Leucine rich r 90.6 0.17 3.6E-06 28.2 1.4 15 494-508 2-16 (17)
425 PF00625 Guanylate_kin: Guanyl 90.6 0.19 4.2E-06 49.1 2.9 23 182-204 2-24 (183)
426 TIGR00602 rad24 checkpoint pro 90.6 0.3 6.4E-06 56.8 4.8 50 156-205 81-133 (637)
427 PRK13231 nitrogenase reductase 90.6 0.2 4.3E-06 52.2 3.2 23 182-204 2-24 (264)
428 cd03269 ABC_putative_ATPase Th 90.6 0.19 4.2E-06 50.2 3.0 24 182-205 26-49 (210)
429 cd04155 Arl3 Arl3 subfamily. 90.6 0.19 4.1E-06 48.4 2.8 24 182-205 14-37 (173)
430 PRK13541 cytochrome c biogenes 90.6 0.21 4.4E-06 49.4 3.1 24 182-205 26-49 (195)
431 COG0542 clpA ATP-binding subun 90.5 0.27 5.9E-06 57.6 4.4 45 158-204 169-213 (786)
432 PRK08356 hypothetical protein; 90.5 0.22 4.7E-06 49.3 3.1 21 183-203 6-26 (195)
433 PF03029 ATP_bind_1: Conserved 90.5 0.14 3E-06 52.3 1.8 19 187-205 1-19 (238)
434 PRK05707 DNA polymerase III su 90.5 0.86 1.9E-05 48.9 7.9 24 181-204 21-44 (328)
435 cd03263 ABC_subfamily_A The AB 90.5 0.21 4.5E-06 50.4 3.1 24 182-205 28-51 (220)
436 cd04177 RSR1 RSR1 subgroup. R 90.4 0.21 4.5E-06 47.9 2.9 22 185-206 4-25 (168)
437 PRK10584 putative ABC transpor 90.4 0.21 4.5E-06 50.7 3.0 24 182-205 36-59 (228)
438 cd03235 ABC_Metallic_Cations A 90.4 0.2 4.4E-06 50.2 2.9 24 182-205 25-48 (213)
439 cd01862 Rab7 Rab7 subfamily. 90.3 0.21 4.7E-06 47.8 3.0 22 184-205 2-23 (172)
440 PRK15453 phosphoribulokinase; 90.3 0.23 5E-06 51.2 3.2 24 181-204 4-27 (290)
441 cd02026 PRK Phosphoribulokinas 90.3 0.17 3.8E-06 52.7 2.4 21 184-204 1-21 (273)
442 TIGR02902 spore_lonB ATP-depen 90.3 0.33 7.2E-06 55.8 4.9 45 158-204 64-108 (531)
443 PRK01184 hypothetical protein; 90.3 0.21 4.6E-06 48.7 2.9 19 183-201 2-20 (184)
444 PRK06761 hypothetical protein; 90.3 0.21 4.5E-06 52.0 2.9 23 183-205 4-26 (282)
445 PRK15177 Vi polysaccharide exp 90.3 0.21 4.7E-06 50.1 3.0 24 182-205 13-36 (213)
446 cd00879 Sar1 Sar1 subfamily. 90.3 0.38 8.1E-06 47.1 4.7 24 182-205 19-42 (190)
447 smart00173 RAS Ras subfamily o 90.3 0.22 4.7E-06 47.4 2.9 22 184-205 2-23 (164)
448 COG0003 ArsA Predicted ATPase 90.3 0.21 4.5E-06 53.0 3.0 22 182-203 2-23 (322)
449 cd04163 Era Era subfamily. Er 90.3 0.26 5.6E-06 46.6 3.4 24 182-205 3-26 (168)
450 cd01428 ADK Adenylate kinase ( 90.2 0.19 4.2E-06 49.4 2.6 21 185-205 2-22 (194)
451 cd03296 ABC_CysA_sulfate_impor 90.2 0.22 4.7E-06 51.0 3.0 24 182-205 28-51 (239)
452 cd01130 VirB11-like_ATPase Typ 90.2 0.25 5.4E-06 48.4 3.3 35 167-204 13-47 (186)
453 cd03256 ABC_PhnC_transporter A 90.2 0.22 4.8E-06 51.0 3.1 24 182-205 27-50 (241)
454 cd03226 ABC_cobalt_CbiO_domain 90.2 0.23 5E-06 49.5 3.1 24 182-205 26-49 (205)
455 cd03265 ABC_DrrA DrrA is the A 90.2 0.23 4.9E-06 50.2 3.0 24 182-205 26-49 (220)
456 cd03264 ABC_drug_resistance_li 90.2 0.21 4.5E-06 50.1 2.7 22 184-205 27-48 (211)
457 cd03260 ABC_PstB_phosphate_tra 90.2 0.23 4.9E-06 50.4 3.1 23 182-204 26-48 (227)
458 smart00534 MUTSac ATPase domai 90.1 0.41 8.9E-06 46.8 4.8 21 184-204 1-21 (185)
459 COG0488 Uup ATPase components 90.1 0.52 1.1E-05 53.8 6.2 23 182-204 348-370 (530)
460 TIGR02315 ABC_phnC phosphonate 90.1 0.22 4.8E-06 51.1 3.0 24 182-205 28-51 (243)
461 cd03237 ABC_RNaseL_inhibitor_d 90.1 0.23 5.1E-06 51.0 3.1 24 182-205 25-48 (246)
462 TIGR03864 PQQ_ABC_ATP ABC tran 90.1 0.23 5E-06 50.7 3.0 24 182-205 27-50 (236)
463 TIGR02211 LolD_lipo_ex lipopro 90.0 0.23 4.9E-06 50.2 3.0 24 182-205 31-54 (221)
464 PF00142 Fer4_NifH: 4Fe-4S iro 90.0 0.25 5.3E-06 50.2 3.1 22 183-204 1-22 (273)
465 PTZ00088 adenylate kinase 1; P 90.0 0.21 4.6E-06 50.5 2.6 20 185-204 9-28 (229)
466 PRK13705 plasmid-partitioning 90.0 0.43 9.3E-06 52.6 5.2 26 180-205 104-130 (388)
467 COG1126 GlnQ ABC-type polar am 89.9 0.29 6.3E-06 47.9 3.4 28 182-209 28-55 (240)
468 KOG0730 AAA+-type ATPase [Post 89.9 0.61 1.3E-05 52.9 6.3 54 152-205 427-491 (693)
469 COG0410 LivF ABC-type branched 89.9 0.28 6.2E-06 48.5 3.3 25 182-206 29-53 (237)
470 cd03292 ABC_FtsE_transporter F 89.9 0.24 5.2E-06 49.7 3.0 24 182-205 27-50 (214)
471 cd03301 ABC_MalK_N The N-termi 89.9 0.25 5.5E-06 49.5 3.1 24 182-205 26-49 (213)
472 TIGR01184 ntrCD nitrate transp 89.9 0.25 5.4E-06 50.2 3.1 23 183-205 12-34 (230)
473 PRK13538 cytochrome c biogenes 89.9 0.25 5.4E-06 49.2 3.0 24 182-205 27-50 (204)
474 cd01135 V_A-ATPase_B V/A-type 89.9 0.37 8E-06 49.7 4.3 35 183-217 70-106 (276)
475 cd04119 RJL RJL (RabJ-Like) su 89.9 0.94 2E-05 42.9 7.0 22 185-206 3-24 (168)
476 PRK08972 fliI flagellum-specif 89.8 0.36 7.7E-06 53.2 4.4 24 182-205 162-185 (444)
477 TIGR03608 L_ocin_972_ABC putat 89.8 0.25 5.4E-06 49.3 3.0 23 183-205 25-47 (206)
478 cd03115 SRP The signal recogni 89.7 0.27 5.7E-06 47.5 3.0 21 184-204 2-22 (173)
479 PRK11629 lolD lipoprotein tran 89.7 0.25 5.5E-06 50.3 3.0 24 182-205 35-58 (233)
480 cd03224 ABC_TM1139_LivF_branch 89.7 0.27 5.8E-06 49.7 3.2 24 182-205 26-49 (222)
481 COG1116 TauB ABC-type nitrate/ 89.7 0.27 5.8E-06 49.4 3.0 23 182-204 29-51 (248)
482 TIGR03574 selen_PSTK L-seryl-t 89.7 0.22 4.8E-06 51.4 2.6 20 185-204 2-21 (249)
483 COG4608 AppF ABC-type oligopep 89.7 0.24 5.2E-06 50.4 2.7 23 182-204 39-61 (268)
484 cd04159 Arl10_like Arl10-like 89.7 0.24 5.2E-06 46.4 2.7 21 185-205 2-22 (159)
485 TIGR00231 small_GTP small GTP- 89.7 0.27 5.8E-06 45.9 3.0 23 184-206 3-25 (161)
486 cd03258 ABC_MetN_methionine_tr 89.7 0.26 5.7E-06 50.2 3.1 24 182-205 31-54 (233)
487 cd03257 ABC_NikE_OppD_transpor 89.7 0.25 5.5E-06 50.1 3.0 24 182-205 31-54 (228)
488 PRK11248 tauB taurine transpor 89.7 0.26 5.6E-06 51.1 3.0 23 183-205 28-50 (255)
489 PRK10247 putative ABC transpor 89.6 0.26 5.7E-06 49.9 3.0 24 182-205 33-56 (225)
490 PRK14532 adenylate kinase; Pro 89.6 0.24 5.2E-06 48.6 2.7 20 185-204 3-22 (188)
491 KOG3347 Predicted nucleotide k 89.6 0.25 5.4E-06 45.2 2.4 23 182-204 7-29 (176)
492 smart00175 RAB Rab subfamily o 89.6 0.27 5.8E-06 46.6 3.0 21 185-205 3-23 (164)
493 TIGR02770 nickel_nikD nickel i 89.6 0.26 5.6E-06 50.2 3.0 24 182-205 12-35 (230)
494 PRK13407 bchI magnesium chelat 89.6 0.35 7.6E-06 51.8 4.0 46 157-204 6-51 (334)
495 cd04113 Rab4 Rab4 subfamily. 89.6 0.27 5.8E-06 46.6 2.9 21 185-205 3-23 (161)
496 cd00876 Ras Ras family. The R 89.5 0.29 6.4E-06 46.0 3.1 21 185-205 2-22 (160)
497 TIGR00382 clpX endopeptidase C 89.5 0.49 1.1E-05 52.1 5.1 47 158-204 76-138 (413)
498 cd03278 ABC_SMC_barmotin Barmo 89.5 0.26 5.7E-06 48.8 2.8 21 184-204 24-44 (197)
499 PLN02165 adenylate isopentenyl 89.5 0.25 5.4E-06 52.4 2.8 24 182-205 43-66 (334)
500 TIGR02768 TraA_Ti Ti-type conj 89.5 0.73 1.6E-05 55.3 7.1 37 165-204 354-390 (744)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-78 Score=706.27 Aligned_cols=660 Identities=27% Similarity=0.389 Sum_probs=499.4
Q ss_pred CcchHHHHHHHHHHhhcchhhcccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCChHHHHHHHHHHHH
Q 048418 1 MDINFRLFSERLGRVLAGEEVTLPDAAKQPIQNLHAEVEIVTSWLSEFEDDISCLLMQKIGELEIDNPDLGTVMDEINCF 80 (798)
Q Consensus 1 m~~~v~~~~~kl~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~ 80 (798)
|++.++..++|+.+++. +++....+.++++..|++.+..++.+++||+.+ + .....+..|.+.++++
T Consensus 1 ~~~~~s~~~~~~~~~l~-~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~------~------~~~~~~~~~~e~~~~~ 67 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLN-RESECLDGKDNYILELKENLKALQSALEDLDAK------R------DDLERRVNWEEDVGDL 67 (889)
T ss_pred CCeEEEEehhhHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh------c------chHHHHHHHHHHHHHH
Confidence 78888999999999999 999999999999999999999999999999999 6 8889999999999999
Q ss_pred HhHHHHHHHHhHhhhhcccC-----CC----------CcHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Q 048418 81 TYECEKVIDTFVNSITQQKS-----QS----------GRSMDICDALLGLQSKIIDIKQQMQQVQHFDSRIIDELKSIEA 145 (798)
Q Consensus 81 ~~~~ed~~d~~~~~~~~~~~-----~~----------~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 145 (798)
+|++||+++.|..+....+. .+ +++++.+..+..+.+++.++.+..+.++ ........+.. ..
T Consensus 68 ~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~-~~~~~~~~~~~-~~ 145 (889)
T KOG4658|consen 68 VYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLG-SKGVFEVVGES-LD 145 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhc-cccceeccccc-cc
Confidence 99999999999987654321 01 4447777888888888888888888887 44322222111 11
Q ss_pred cccccCCCCCCCCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccc-ccccccccce-------
Q 048418 146 EAGNFLASSSSKNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNY-VKHYFDCHAW------- 217 (798)
Q Consensus 146 ~~~~~~~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~w------- 217 (798)
.+....+.+...+.. ||.+..++++++.|.+++. .++||+||||+||||||+.|+|+.. ++++||.++|
T Consensus 146 ~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f 222 (889)
T KOG4658|consen 146 PREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEF 222 (889)
T ss_pred chhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccc
Confidence 011122344444444 9999999999999999873 9999999999999999999999977 9999999999
Q ss_pred ---------------------------------------EEEEEEECCCChhhHHHHhhhcCCCCCCcEEEEEeeecccc
Q 048418 218 ---------------------------------------RYLIVFDNVWRISAWDVIRKILPDNQNGSRVLITLAQIEIV 258 (798)
Q Consensus 218 ---------------------------------------r~LivlDdvw~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~ 258 (798)
||+|||||||+..+|+.++.|+|...+||||++|||+++||
T Consensus 223 ~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~ 302 (889)
T KOG4658|consen 223 TTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVC 302 (889)
T ss_pred cHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhh
Confidence 99999999999999999999999999999999999999999
Q ss_pred c--c---cccc--------------------------hhhhhcccee-----------eccCcccC--CcCCCCchHHHh
Q 048418 259 T--S---FQFE--------------------------NGENIGLDFV-----------PTGGPLRA--TYQGWPFHILYH 294 (798)
Q Consensus 259 ~--~---~~~~--------------------------~l~~i~~~i~-----------~~g~~L~~--~~~~W~~~~~~l 294 (798)
. . .+++ .++++|++|| ++|+.|+. +.++|+ ++.
T Consensus 303 ~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~---~~~ 379 (889)
T KOG4658|consen 303 GRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWR---RAL 379 (889)
T ss_pred hccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHH---HHH
Confidence 9 1 2232 4889999999 99999999 888999 666
Q ss_pred hhccC---------CccHHHHHhccccccccccCCCCCCchHHHhHhccCCCCceechhhHHHHHHHcCCCCC-----CH
Q 048418 295 GSISL---------EENIDEVLTMSLGLQCVIYCMLPFCLKPCFLYFSVFPAHLEISTRQLYQLWIAEGFISD-----NN 360 (798)
Q Consensus 295 ~~~~~---------~~~i~~~l~~s~~~~~~~y~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~-----~~ 360 (798)
+.+.+ ++.++++|++| ||.||+++|.||+|||+||+||+|+++.||.+||||||+.+ .+
T Consensus 380 ~~l~s~~~~~~~~~~~~i~~iLklS-------yd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~ 452 (889)
T KOG4658|consen 380 NVLKSSLAADFSGMEESILPILKLS-------YDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA 452 (889)
T ss_pred ccccccccCCCCchhhhhHHhhhcc-------HhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch
Confidence 55544 23499999999 99999889999999999999999999999999999999976 78
Q ss_pred HHHHHHHHHHHHhCCcceeeccCCCCceeEEEcCcchHHHHHHHhh-----ccc--------------------------
Q 048418 361 EATAEKYLEQLINRGFVEANKRRAGGTINTCSIPGCCHPVLLGVAS-----ESD-------------------------- 409 (798)
Q Consensus 361 e~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli~dla~~i~~-----~e~-------------------------- 409 (798)
++.|+.|+.+|++++|++..... |+..+|+|||+|||||.++|+ +++
T Consensus 453 ~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~ 530 (889)
T KOG4658|consen 453 EDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSL 530 (889)
T ss_pred hcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEE
Confidence 99999999999999999987754 667899999999999999999 443
Q ss_pred -----cccccCC-CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcc-cccCcccccCcCccceEEecCCCcc
Q 048418 410 -----FAYLDDY-DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLV-LIQYPSGIENLFLLRYLKLNIPSLK 482 (798)
Q Consensus 410 -----~~~~~~~-~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-i~~lp~~i~~L~~Lr~L~L~~~~i~ 482 (798)
....... +++++||.+.++... ...+...+|..++.||||||++|. +.++|++|++|.|||||+++++.++
T Consensus 531 ~~~~~~~~~~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 531 MNNKIEHIAGSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred eccchhhccCCCCCCccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc
Confidence 0111223 778999999887520 135566789999999999999876 6799999999999999999999999
Q ss_pred ccChhhhhCCCCCcEeecccc-ccccchhhhcccccCceeccCCcccCCCCCC--CCCCCCCcceeecCCC-Ccchhhhc
Q 048418 483 SLPPSLLSNLPNLYTLDMPFS-YIDHTADEFWKMNKLKHLNFGSITLPAHPGK--YCGSLENLNFISALHP-CCCTEDIL 558 (798)
Q Consensus 483 ~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p--~i~~L~~L~~l~~~~~-~~~~~~~l 558 (798)
.+|.++ ++|..|++|++..+ .+..+|..+..|++||+|.+..........- .+.+|++|+.+.+... ...... +
T Consensus 609 ~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~-l 686 (889)
T KOG4658|consen 609 HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLED-L 686 (889)
T ss_pred ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhh-h
Confidence 999999 99999999999999 5666677777799999998876543221111 4457777777766532 222333 4
Q ss_pred CCCCCCCe----EEEecccchhhhhHHHhccCCCCCCEEEEecCCCC----------------CCCceeee---------
Q 048418 559 GRLPNLRN----LRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKM----------------PAFSKIVL--------- 609 (798)
Q Consensus 559 ~~l~~L~~----L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~----------------~~L~~L~l--------- 609 (798)
..++.|.. +.+.++ .....+.++..+.+|+.|.+...++. +++..+.+
T Consensus 687 ~~~~~L~~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 687 LGMTRLRSLLQSLSIEGC---SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred hhhHHHHHHhHhhhhccc---ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc
Confidence 44444442 222222 23344556677778888887763210 00111100
Q ss_pred -ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecC---
Q 048418 610 -VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGT--- 685 (798)
Q Consensus 610 -~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~--- 685 (798)
|... .|+|+.|.+..|....++++....+..++.+.+..+.+.+.......++|+++..+.+.+- .+..|....
T Consensus 764 ~~~~f-~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~ 841 (889)
T KOG4658|consen 764 TWLLF-APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFL-KLEELIVEECPK 841 (889)
T ss_pred chhhc-cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCcc-chhheehhcCcc
Confidence 3323 6788888888887666666666666666665555444444323344455555555555442 233332222
Q ss_pred -CcccccceeeEeeC
Q 048418 686 -GAMPKLEFLIINPC 699 (798)
Q Consensus 686 -~~l~~L~~L~l~~c 699 (798)
+.+|.+.++.+.+|
T Consensus 842 l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 842 LGKLPLLSTLTIVGC 856 (889)
T ss_pred cccCccccccceecc
Confidence 34444444444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.8e-57 Score=555.50 Aligned_cols=521 Identities=18% Similarity=0.213 Sum_probs=375.1
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccce-------------------
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW------------------- 217 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w------------------- 217 (798)
+..++||++.+++++..+|..+.++++|||||||||+||||||+++|+ ++..+|+..+|
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccc
Confidence 356799999999999999976667799999999999999999999998 56666654322
Q ss_pred -------------------------------------EEEEEEECCCChhhHHHHhhhcCCCCCCcEEEEEeeeccccc-
Q 048418 218 -------------------------------------RYLIVFDNVWRISAWDVIRKILPDNQNGSRVLITLAQIEIVT- 259 (798)
Q Consensus 218 -------------------------------------r~LivlDdvw~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~- 259 (798)
|+||||||||+..+|+.+.....+.++|||||||||++.++.
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 899999999999999999988888889999999999999876
Q ss_pred ---ccccc-------------------------hhhhhcccee-----------eccCcccC-CcCCCCchHHHhhhccC
Q 048418 260 ---SFQFE-------------------------NGENIGLDFV-----------PTGGPLRA-TYQGWPFHILYHGSISL 299 (798)
Q Consensus 260 ---~~~~~-------------------------~l~~i~~~i~-----------~~g~~L~~-~~~~W~~~~~~l~~~~~ 299 (798)
..+|+ ++.+++++|+ ++|+.|++ +.++|+ .+++++.+
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~---~~l~~L~~ 416 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM---DMLPRLRN 416 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHH---HHHHHHHh
Confidence 23333 5667788887 88999999 999999 99999876
Q ss_pred --CccHHHHHhccccccccccCCCCC-CchHHHhHhccCCCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCc
Q 048418 300 --EENIDEVLTMSLGLQCVIYCMLPF-CLKPCFLYFSVFPAHLEISTRQLYQLWIAEGFISDNNEATAEKYLEQLINRGF 376 (798)
Q Consensus 300 --~~~i~~~l~~s~~~~~~~y~~L~~-~lk~cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~~~~~~~~L~~~~l 376 (798)
+.+|.++|++| |+.|++ ..|.||+|||+||.++.+ +.+..|+|.+... ++..++.|+++||
T Consensus 417 ~~~~~I~~~L~~S-------Yd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksL 480 (1153)
T PLN03210 417 GLDGKIEKTLRVS-------YDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSL 480 (1153)
T ss_pred CccHHHHHHHHHh-------hhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCC
Confidence 45699999999 999987 499999999999998754 3577888887663 3445899999999
Q ss_pred ceeeccCCCCceeEEEcCcchHHHHHHHhhcccccc---------------c-cCC-CCCceEEEEecCCCCCCCchhhH
Q 048418 377 VEANKRRAGGTINTCSIPGCCHPVLLGVASESDFAY---------------L-DDY-DSHLHSLLYFTSESRHIDPIDWE 439 (798)
Q Consensus 377 l~~~~~~~~g~~~~~~mHdli~dla~~i~~~e~~~~---------------~-~~~-~~~LrsL~~~~~~~~~~~~~~~~ 439 (798)
++... ..++|||++|+||+.+++++.... . ... ..+++.+.+...... ...+..
T Consensus 481 i~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~--~~~i~~ 551 (1153)
T PLN03210 481 IHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID--ELHIHE 551 (1153)
T ss_pred EEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc--eeeecH
Confidence 98743 258999999999999998764111 0 111 345555554433221 134455
Q ss_pred HHhhccCceeEEEecCcc------cc-cCcccccCcC-ccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh
Q 048418 440 KICEMFKLLRVLDLGSLV------LI-QYPSGIENLF-LLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE 511 (798)
Q Consensus 440 ~~~~~~~~Lr~L~L~~~~------i~-~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~ 511 (798)
..|..|++|+.|.+..+. +. .+|..+..++ +||+|.+.++.+..+|..+ .+.+|+.|++++|.+..+|.+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccc
Confidence 678888888888886543 22 5677776665 5888888888888888876 578888888888888888888
Q ss_pred hcccccCceeccCCcccCCCCCCCCCCCCCcceeecCC---CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCC
Q 048418 512 FWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALH---PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLS 588 (798)
Q Consensus 512 i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~ 588 (798)
+..+++|+.|+++++... ..+|.++.+++|+.+++.+ ....+.. ++++++|+.|++++| .....+|..+ +++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l-~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c--~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNL-KEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRC--ENLEILPTGI-NLK 704 (1153)
T ss_pred cccCCCCCEEECCCCCCc-CcCCccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCC--CCcCccCCcC-CCC
Confidence 888888888888876532 3466777778888887764 2344556 788888888888887 3555566544 678
Q ss_pred CCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeecccc---CC---eeeeCCC
Q 048418 589 CLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYS---GR---KLTCGSD 662 (798)
Q Consensus 589 ~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~---~~---~~~~~~~ 662 (798)
+|+.|++++ |..++.++ ..+++|++|++++|.+. ..|..+ .+++|+.|.+.++... .. ..+....
T Consensus 705 sL~~L~Lsg---c~~L~~~p----~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 705 SLYRLNLSG---CSRLKSFP----DISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred CCCEEeCCC---CCCccccc----cccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhh
Confidence 888888887 44444332 11456777777777653 223222 4566666666532210 00 0011112
Q ss_pred CCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCc
Q 048418 663 GFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 663 ~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 724 (798)
.+++|+.|+|++|+.+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|++++|.
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 24566666666666666666666666666666666666666666554 46666666666664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=6.1e-32 Score=286.88 Aligned_cols=184 Identities=32% Similarity=0.571 Sum_probs=151.0
Q ss_pred cHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccce--------------------------
Q 048418 164 LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW-------------------------- 217 (798)
Q Consensus 164 ~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-------------------------- 217 (798)
||.++++|.+.|.+..++.++|+|+||||+||||||++++++..++.+|+.++|
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999996677999999999999999999999998779999999999
Q ss_pred ---------------------EEEEEEECCCChhhHHHHhhhcCCCCCCcEEEEEeeeccccc--c---cccc-------
Q 048418 218 ---------------------RYLIVFDNVWRISAWDVIRKILPDNQNGSRVLITLAQIEIVT--S---FQFE------- 264 (798)
Q Consensus 218 ---------------------r~LivlDdvw~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~--~---~~~~------- 264 (798)
++||||||||+...|+.+...++....||+||||||+..|+. . ..|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999998888888999999999999987 1 2232
Q ss_pred -------------------hhhhhcccee-----------eccCcccC--CcCCCCchHHHhhhccC--------CccHH
Q 048418 265 -------------------NGENIGLDFV-----------PTGGPLRA--TYQGWPFHILYHGSISL--------EENID 304 (798)
Q Consensus 265 -------------------~l~~i~~~i~-----------~~g~~L~~--~~~~W~~~~~~l~~~~~--------~~~i~ 304 (798)
.+.+++++|+ ++|+.|+. +..+|+ ++++++.+ ...+.
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~---~~~~~l~~~~~~~~~~~~~~~ 237 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWE---EALEELENSLRESRDYDRSVF 237 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHH---HHHHHHHHCHTCSSGSCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccc
Confidence 2345566666 77888866 889999 87776654 12399
Q ss_pred HHHhccccccccccCCCCCCchHHHhHhccCCCCceechhhHHHHHHHcCCCC
Q 048418 305 EVLTMSLGLQCVIYCMLPFCLKPCFLYFSVFPAHLEISTRQLYQLWIAEGFIS 357 (798)
Q Consensus 305 ~~l~~s~~~~~~~y~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~ 357 (798)
.++.+| |+.||+++|+||+|||+||+++.|+++.|+++|+++|||.
T Consensus 238 ~~l~~s-------~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 238 SALELS-------YDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHH-------HHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccceec-------hhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 999999 9999999999999999999999999999999999999995
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.4e-27 Score=295.49 Aligned_cols=362 Identities=18% Similarity=0.158 Sum_probs=228.1
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-cCcccccCcCccceEEecCCCcc-ccChhhhhCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPPSLLSNLPN 494 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~ 494 (798)
+++|+.|.+.++... ..++...+..+++||+|+|++|.+. .+|. +.+++|++|+|++|.+. .+|..+ +++++
T Consensus 92 l~~L~~L~Ls~n~~~---~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~ 165 (968)
T PLN00113 92 LPYIQTINLSNNQLS---GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSS 165 (968)
T ss_pred CCCCCEEECCCCccC---CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCC
Confidence 778888888776542 2455566667888888888888776 4553 45777888888887776 667776 78888
Q ss_pred CcEeecccccc-ccchhhhcccccCceeccCCcccCCCCCC-CCCCCCCcceeecCC---CCcchhhhcCCCCCCCeEEE
Q 048418 495 LYTLDMPFSYI-DHTADEFWKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISALH---PCCCTEDILGRLPNLRNLRI 569 (798)
Q Consensus 495 L~~L~L~~~~l-~~lp~~i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~---~~~~~~~~l~~l~~L~~L~l 569 (798)
|++|++++|.+ ..+|..++++++|++|++++|.+. ..+| .++++++|+.+++.. ....+.. ++++++|+.|++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 243 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL 243 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEEC
Confidence 88888888754 356777788888888888877765 3456 777777777777764 2344555 777778888888
Q ss_pred ecccchhhhhHHHhccCCCCCCEEEEecCCC----C------CCCceeee-----------ecCCCCCCeeEEEEEeccC
Q 048418 570 WGDLSYYQFLLSQSLCRLSCLESLKLVNESK----M------PAFSKIVL-----------VEYQFPPRLTHLSFSNTEL 628 (798)
Q Consensus 570 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i----~------~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l 628 (798)
++| ...+.+|..++.+++|+.|++++|.+ | ++|+.|.+ ++.. +++|++|++++|.+
T Consensus 244 ~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~ 320 (968)
T PLN00113 244 VYN--NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNF 320 (968)
T ss_pred cCc--eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC-CCCCcEEECCCCcc
Confidence 777 34556677777777777777777542 1 23333333 2233 55666666666665
Q ss_pred CCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCcc
Q 048418 629 MEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQ 708 (798)
Q Consensus 629 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~ 708 (798)
.+..+..++.+++|+.|++++|.+.+. ++..++.+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWSNKFSGE-IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCCCCcCc-CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 555555566666666666665555543 2444455666666666665444445555555666666666666655566666
Q ss_pred CCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCCCcccccchh-hhhHH---------Hh
Q 048418 709 LWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKLKFG-LRTWE---------WN 778 (798)
Q Consensus 709 l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L~~~-~~~~~---------~~ 778 (798)
+..+++|+.|++++|... ...+..+..+++|+.+++++|.+++.+|..+..+++|+.. +.... -.
T Consensus 400 ~~~~~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 474 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFS-----GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474 (968)
T ss_pred HhCCCCCCEEECcCCEee-----eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc
Confidence 666667777777666421 1133345567777777777777777776655555555311 11000 01
Q ss_pred hhhhcCcccccccCcCc
Q 048418 779 EERQQNDYKDCHLQGHF 795 (798)
Q Consensus 779 ~~~~~l~~~~~~~~~~~ 795 (798)
.++..+++++|+..|..
T Consensus 475 ~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 475 KRLENLDLSRNQFSGAV 491 (968)
T ss_pred ccceEEECcCCccCCcc
Confidence 34566777777766554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.3e-27 Score=295.68 Aligned_cols=343 Identities=21% Similarity=0.212 Sum_probs=155.4
Q ss_pred HhhccCceeEEEecCcccc-cCcccccCcCccceEEecCCCcc-ccChhhhhCCCCCcEeeccccccc-cchhhhccccc
Q 048418 441 ICEMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPPSLLSNLPNLYTLDMPFSYID-HTADEFWKMNK 517 (798)
Q Consensus 441 ~~~~~~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~ 517 (798)
.+.++++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..+ +++++|++|++++|.+. .+|..++++++
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 3445555555555555544 45555555555555555555544 344444 55555555555555433 34555555555
Q ss_pred CceeccCCcccCCCCCC-CCCCCCCcceeecCC---CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEE
Q 048418 518 LKHLNFGSITLPAHPGK-YCGSLENLNFISALH---PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESL 593 (798)
Q Consensus 518 L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L 593 (798)
|++|++++|.+. ..+| .++++++|+.+++.. .+..+.. +.++++|+.|++++| ...+.+|..+..+++|+.|
T Consensus 238 L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 238 LNHLDLVYNNLT-GPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDN--SLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred CCEEECcCceec-cccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCC--eeccCCChhHcCCCCCcEE
Confidence 555555555543 2344 455555555555442 1223333 445555555555544 2333344444455555555
Q ss_pred EEecCCC----------CCCCceeee-----------ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccc
Q 048418 594 KLVNESK----------MPAFSKIVL-----------VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSY 652 (798)
Q Consensus 594 ~l~~n~i----------~~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 652 (798)
++++|.+ .++|+.|.+ ++.. +++|+.|++++|.+.+..+..+..+++|+.|++.+|.+
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 5544331 111222211 1111 23333333333333333333333333333333333333
Q ss_pred cCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHh
Q 048418 653 SGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLR 732 (798)
Q Consensus 653 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~ 732 (798)
.+. ++..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|...
T Consensus 393 ~~~-~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~------ 465 (968)
T PLN00113 393 EGE-IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF------ 465 (968)
T ss_pred ccc-CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee------
Confidence 221 1223334455555555554433344444445555555555555544444444445555555555555310
Q ss_pred cCCCcccCCCceeEeeccccccccCCCCCCCcccccchh-hh----------hHHHhhhhhcCcccccccCcCcC
Q 048418 733 EFEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKLKFG-LR----------TWEWNEERQQNDYKDCHLQGHFC 796 (798)
Q Consensus 733 ~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L~~~-~~----------~~~~~~~~~~l~~~~~~~~~~~~ 796 (798)
...+.....++|+.|++++|.+++.+|..+.++++|+.- +. .+.-..++..+++++|+.+|...
T Consensus 466 ~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 466 GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred eecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 011111123455566666666665555555554444210 00 01111344677888887776543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.4e-26 Score=245.68 Aligned_cols=294 Identities=20% Similarity=0.218 Sum_probs=256.7
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
.|.||++.+..+...+ ..+++ -+-.++-|.+||||.|.+.+.|..+...+++-.|+|++|+|.++|.++|-+|..|-
T Consensus 77 Lp~LRsv~~R~N~LKn--sGiP~-diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKN--SGIPT-DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred chhhHHHhhhcccccc--CCCCc-hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence 7889999988776543 23343 44678999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCC----CcchhhhcCCCCCCCeEEEecc
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHP----CCCTEDILGRLPNLRNLRIWGD 572 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~----~~~~~~~l~~l~~L~~L~l~~~ 572 (798)
.|||++|.+..+|+.+..|.+|+.|+|++|.+....+..+.+++.|+.+.++++ ..+|.. +..+.||+.++++.|
T Consensus 154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhcccccc
Confidence 999999999999999999999999999999876544335556677777777652 345556 888999999999998
Q ss_pred cchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccc
Q 048418 573 LSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSY 652 (798)
Q Consensus 573 ~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 652 (798)
....+|..+-++.+|+.|++++|. ++.|...... ..+|++|+++.|+++ ..|..+..++.|+.|.+.+|.+
T Consensus 233 ---~Lp~vPecly~l~~LrrLNLS~N~----iteL~~~~~~-W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 233 ---NLPIVPECLYKLRNLRRLNLSGNK----ITELNMTEGE-WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred ---CCCcchHHHhhhhhhheeccCcCc----eeeeeccHHH-Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence 677889999999999999999988 7877776666 789999999999975 6788899999999999999998
Q ss_pred cCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcH
Q 048418 653 SGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQP 725 (798)
Q Consensus 653 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 725 (798)
+-+.+|..++.+.+|+++...+| .++-+|..++.|+.|+.|.++.|..+ .+|+.+.-++.|+.|++..||.
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 88889999999999999999987 78999999999999999999987754 5999999999999999999983
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-24 Score=229.89 Aligned_cols=337 Identities=17% Similarity=0.132 Sum_probs=264.2
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
++..++|.+.++... ++-..+|.++++|+.+++..|.++.+|.......||+.|+|.+|.|+++..+-+..++.|+
T Consensus 77 p~~t~~LdlsnNkl~----~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLS----HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccccc----cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 888999999988763 4556788999999999999999999999888888999999999999988776558899999
Q ss_pred Eeeccccccccchh-hhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCC--CCcchhhhcCCCCCCCeEEEeccc
Q 048418 497 TLDMPFSYIDHTAD-EFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALH--PCCCTEDILGRLPNLRNLRIWGDL 573 (798)
Q Consensus 497 ~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~ 573 (798)
.|||+.|.+.++|. .+..-.++++|+|++|.|+....-.+.+|.+|..+.++. ....+...+.++++|+.|++..|.
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 99999999998864 456668999999999999853333666777888887774 223333338889999999999884
Q ss_pred chhhhhHHHhccCCCCCCEEEEecCCC----------CCCCceeee-----------ecCCCCCCeeEEEEEeccCCCCC
Q 048418 574 SYYQFLLSQSLCRLSCLESLKLVNESK----------MPAFSKIVL-----------VEYQFPPRLTHLSFSNTELMEDP 632 (798)
Q Consensus 574 ~~~~~~l~~~l~~l~~L~~L~l~~n~i----------~~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~ 632 (798)
-... --..|..+++|+.|.+..|+| +.+++.|.+ |+.. ++.|+.|+++.|.+....
T Consensus 233 iriv--e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 233 IRIV--EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred eeee--hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheee
Confidence 2111 134678888999998888775 667777776 7777 888999999999887777
Q ss_pred ccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcc-eecCCcccccceeeEeeCCCCC---CCCcc
Q 048418 633 MPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEW-TMGTGAMPKLEFLIINPCAYLK---KMPEQ 708 (798)
Q Consensus 633 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~---~lp~~ 708 (798)
+...+-.++|+.|+|++|.++.-. +.++..+..|++|.|++|. +..+ ...+..+.+|++|++++|.... +-...
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLD-EGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred cchhhhcccceeEeccccccccCC-hhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 788888889999999988877532 4556678888999998873 4444 3446678999999999987543 22334
Q ss_pred CCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCCCccccc
Q 048418 709 LWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKL 768 (798)
Q Consensus 709 l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L 768 (798)
+..+++|+.|.+.||... .+. -..+..+++|+.|++.+|.+...-|..|..+ .|
T Consensus 388 f~gl~~LrkL~l~gNqlk---~I~--krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L 441 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLK---SIP--KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL 441 (873)
T ss_pred hccchhhhheeecCceee---ecc--hhhhccCcccceecCCCCcceeecccccccc-hh
Confidence 667999999999999732 222 2235589999999999999999999988887 55
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.1e-24 Score=231.44 Aligned_cols=319 Identities=18% Similarity=0.147 Sum_probs=243.5
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc--cCcccccCcCccceEEecCCCccccChhhhhCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPN 494 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 494 (798)
+.+|..|.+..+... ....-++.++.||.+++..|+++ .+|..|.++..|..|+|++|++++.|..+ ..-++
T Consensus 54 lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L-E~AKn 127 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL-EYAKN 127 (1255)
T ss_pred HhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh-hhhcC
Confidence 455566655544331 12233567888898889888876 78888999999999999999999999988 88899
Q ss_pred CcEeeccccccccchhhh-cccccCceeccCCcccCCCCCC-CCCCCCCcceeecCCCCc---chhhhcCCCCCCCeEEE
Q 048418 495 LYTLDMPFSYIDHTADEF-WKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISALHPCC---CTEDILGRLPNLRNLRI 569 (798)
Q Consensus 495 L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~~~~---~~~~~l~~l~~L~~L~l 569 (798)
+-+|+|++|++..+|..+ -+|+.|-.||||+|.+. .+| .+..|..|+.+.++++.. .+.+ +.+|++|+.|++
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhm 204 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHM 204 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhhhc
Confidence 999999999999998764 48888999999998885 367 888888888888875333 3344 555666777788
Q ss_pred ecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEee
Q 048418 570 WGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQ 649 (798)
Q Consensus 570 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 649 (798)
++.+ .....+|.++..+.+|..++++.|++ ..++-.+.. +++|+.|+|++|.++. .....+...+|+.|+++.
T Consensus 205 s~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~L----p~vPecly~-l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 205 SNTQ-RTLDNIPTSLDDLHNLRDVDLSENNL----PIVPECLYK-LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSR 277 (1255)
T ss_pred cccc-chhhcCCCchhhhhhhhhccccccCC----CcchHHHhh-hhhhheeccCcCceee-eeccHHHHhhhhhhcccc
Confidence 7764 45667888888889999999998773 222222334 7899999999998753 334456677899999998
Q ss_pred ccccCCeeeeCCCCCccccEEEeecCCC-CCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHH
Q 048418 650 NSYSGRKLTCGSDGFPNLKVLHLKSMLW-LEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELR 728 (798)
Q Consensus 650 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~-l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~ 728 (798)
|.++. +|.....+++|+.|.+.+|.. .+.+|..+|.+.+|+++...+|. +.-+|++++.|..|+.|.++.|.
T Consensus 278 NQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr---- 350 (1255)
T KOG0444|consen 278 NQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR---- 350 (1255)
T ss_pred chhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc----
Confidence 88876 577777889999999988742 34789999999999999988775 77889999999999999999885
Q ss_pred HHHhcCCCcccCCCceeEeeccccccccCCCC
Q 048418 729 QKLREFEDKEQSIPPLAHFMEYESQITETEPP 760 (798)
Q Consensus 729 ~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~ 760 (798)
+...+..|.-+|.|+.||+.+|.-.-..|.
T Consensus 351 --LiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 351 --LITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred --eeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 334556666789999999999876655443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.7e-22 Score=214.02 Aligned_cols=312 Identities=19% Similarity=0.161 Sum_probs=226.0
Q ss_pred ceeEEEecCcccc-cCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccc-hhhhcccccCceeccC
Q 048418 447 LLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHLNFG 524 (798)
Q Consensus 447 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 524 (798)
.-+.|++++|.+. .-+..|.++++|+.+++..|.++.+|... +...+|+.|+|.+|.+..+ .+.+.-++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3567999999988 44667899999999999999999999977 7788899999999999888 5778999999999999
Q ss_pred CcccCCCCCCCCCCCCCcceeecCCC---CcchhhhcCCCCCCCeEEEecccchhhhhHH-HhccCCCCCCEEEEecCCC
Q 048418 525 SITLPAHPGKYCGSLENLNFISALHP---CCCTEDILGRLPNLRNLRIWGDLSYYQFLLS-QSLCRLSCLESLKLVNESK 600 (798)
Q Consensus 525 ~~~i~~~~~p~i~~L~~L~~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~n~i 600 (798)
.|.++....|.+..=.+++.+++..+ ...... +.++.+|-.|.++.| ....+| .+|.++++|+.|+|..|.|
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrN---rittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRN---RITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecccccccccccc-ccccchheeeecccC---cccccCHHHhhhcchhhhhhccccce
Confidence 99997644446666566777777642 222233 777889999999998 344444 5677799999999998763
Q ss_pred ----------CCCCceeee-----------ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeee
Q 048418 601 ----------MPAFSKIVL-----------VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTC 659 (798)
Q Consensus 601 ----------~~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 659 (798)
.++|+.|.+ .+.. +.++++|+|..|++....-.++-+|..|+.|++++|.+..-. +.
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~-l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih-~d 311 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG-LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH-ID 311 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceee-ecccceeecccchhhhhhcccccccchhhhhccchhhhheee-cc
Confidence 345555544 2333 677888888888776655667777888888888877765422 33
Q ss_pred CCCCCccccEEEeecCCCCCcce-ecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcc
Q 048418 660 GSDGFPNLKVLHLKSMLWLEEWT-MGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKE 738 (798)
Q Consensus 660 ~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i 738 (798)
...-+++|+.|+|++| .+..++ ..+..+..|++|.++.|....---..+..+++|++|++++|... ..+......+
T Consensus 312 ~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls--~~IEDaa~~f 388 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS--WCIEDAAVAF 388 (873)
T ss_pred hhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE--EEEecchhhh
Confidence 4455678888888876 455553 34556777888888877643222234566778888888777422 2233334455
Q ss_pred cCCCceeEeeccccccccCCCCCCCccccc
Q 048418 739 QSIPPLAHFMEYESQITETEPPSLPSQRKL 768 (798)
Q Consensus 739 ~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L 768 (798)
..+|+|..|++.+|++.......|..++.|
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCccc
Confidence 678888888888888887766667776666
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=2.1e-19 Score=223.25 Aligned_cols=264 Identities=18% Similarity=0.181 Sum_probs=124.9
Q ss_pred ceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeecccc-ccccchhhhcccccCceeccCC
Q 048418 447 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFS-YIDHTADEFWKMNKLKHLNFGS 525 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~ 525 (798)
.||.|++.++.++.+|..+ .+.+|++|+++++.+..+|..+ ..+++|+.|+|++| .+..+|. +..+++|++|++++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 3555555555555555544 2455555555555555555555 55555555555554 3444443 44555555555555
Q ss_pred cccCCCCCC-CCCCCCCcceeecCC---CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCC-
Q 048418 526 ITLPAHPGK-YCGSLENLNFISALH---PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK- 600 (798)
Q Consensus 526 ~~i~~~~~p-~i~~L~~L~~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i- 600 (798)
|... ..+| .+++|++|+.+++.+ ....+.. + ++++|+.|++++|. ....+|.. ..+|+.|++++|.+
T Consensus 667 c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~--~L~~~p~~---~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 667 CSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCS--RLKSFPDI---STNISWLDLDETAIE 738 (1153)
T ss_pred CCCc-cccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCC--Cccccccc---cCCcCeeecCCCccc
Confidence 4332 2344 455555555555442 1111221 1 44555555555542 22222211 23444455444331
Q ss_pred --CC-----CCceeeee-----------------cCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCe
Q 048418 601 --MP-----AFSKIVLV-----------------EYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRK 656 (798)
Q Consensus 601 --~~-----~L~~L~l~-----------------~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 656 (798)
|. +|..|.+. ....+++|+.|++++|......|..++++++|+.|+|++|.... .
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-~ 817 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE-T 817 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-e
Confidence 11 11111110 00013567777777766555566666677777777776543222 1
Q ss_pred eeeCCCCCccccEEEeecCCCCCcce--------------------ecCCcccccceeeEeeCCCCCCCCccCCCCCCCC
Q 048418 657 LTCGSDGFPNLKVLHLKSMLWLEEWT--------------------MGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLN 716 (798)
Q Consensus 657 ~~~~~~~~~~L~~L~L~~~~~l~~l~--------------------~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~ 716 (798)
+|... .+++|+.|+|++|..+..+| ..++.+++|+.|++++|+.+..+|..+..+++|+
T Consensus 818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 818 LPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred eCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 23222 45566666666655554443 3333444444444444444444444444444444
Q ss_pred EEEEecC
Q 048418 717 KFDCWWP 723 (798)
Q Consensus 717 ~L~l~~c 723 (798)
.+++++|
T Consensus 897 ~L~l~~C 903 (1153)
T PLN03210 897 TVDFSDC 903 (1153)
T ss_pred eeecCCC
Confidence 4444444
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=9.6e-23 Score=207.22 Aligned_cols=313 Identities=21% Similarity=0.229 Sum_probs=183.3
Q ss_pred HHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCc
Q 048418 440 KICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLK 519 (798)
Q Consensus 440 ~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 519 (798)
..+.+...|+.|+.+.|.+..+|++|+.+..|..|+..+|++.++|+.+ +++.+|..|++.+|++..+|+..-+++.|+
T Consensus 108 ~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLK 186 (565)
T ss_pred HHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHH
Confidence 3344555566666666666666666666666666666666666666666 666666666666666666655555566666
Q ss_pred eeccCCcccCCCCCC-CCCCCCCcceeecCC-CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhcc-CCCCCCEEEEe
Q 048418 520 HLNFGSITLPAHPGK-YCGSLENLNFISALH-PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLC-RLSCLESLKLV 596 (798)
Q Consensus 520 ~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~l~~L~~L~l~ 596 (798)
+||..+|.+. .+| .++.+++|..+++.. ...++.+ +..|..|++|++..+ ....+|+... .+++|..|++.
T Consensus 187 ~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~~lPe-f~gcs~L~Elh~g~N---~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 187 HLDCNSNLLE--TLPPELGGLESLELLYLRRNKIRFLPE-FPGCSLLKELHVGEN---QIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred hcccchhhhh--cCChhhcchhhhHHHHhhhcccccCCC-CCccHHHHHHHhccc---HHHhhHHHHhcccccceeeecc
Confidence 6666665553 355 666666666666653 2333445 666666666666665 4555555544 55666666666
Q ss_pred cCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccC----------------------
Q 048418 597 NESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSG---------------------- 654 (798)
Q Consensus 597 ~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~---------------------- 654 (798)
.|. +++++..+.. +.+|+.|++++|.++ ..|..++++ .|+.|-+.||.+..
T Consensus 261 dNk----lke~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~ 333 (565)
T KOG0472|consen 261 DNK----LKEVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIK 333 (565)
T ss_pred ccc----cccCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhc
Confidence 655 4443333333 556666666666653 345556666 56666666543200
Q ss_pred -Ceee-----------eCCCCC------ccccEEEeec--------------------------C---------------
Q 048418 655 -RKLT-----------CGSDGF------PNLKVLHLKS--------------------------M--------------- 675 (798)
Q Consensus 655 -~~~~-----------~~~~~~------~~L~~L~L~~--------------------------~--------------- 675 (798)
..+. .....| .+.+.|++++ |
T Consensus 334 ~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkel 413 (565)
T KOG0472|consen 334 DDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKEL 413 (565)
T ss_pred cCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHH
Confidence 0000 000011 1223333322 2
Q ss_pred --------CCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcH----HHHHHHhc----------
Q 048418 676 --------LWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQP----ELRQKLRE---------- 733 (798)
Q Consensus 676 --------~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~----~~~~~l~~---------- 733 (798)
..+..+|..+..+++|..|++++|. +..+|..++.+..|+.|+|+.|.- ++...++.
T Consensus 414 vT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 414 VTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred HHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc
Confidence 1111122234567888899998776 777898888888899999988741 11111111
Q ss_pred ----CCCcccCCCceeEeeccccccccCCCCCCCccccc
Q 048418 734 ----FEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKL 768 (798)
Q Consensus 734 ----~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L 768 (798)
+...++++.+|.+||+.+|.+- .+|+.+.++++|
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL 530 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL 530 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchh-hCChhhccccce
Confidence 3445778889999999999887 568889998888
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=3.5e-22 Score=203.14 Aligned_cols=318 Identities=18% Similarity=0.136 Sum_probs=221.8
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
..+++.+.+..+... . .++.+..+..|..|+..+|++.++|..++.+..|..|++.+|.++++|+.. -+++.|+
T Consensus 113 ~~~l~~l~~s~n~~~----e-l~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~-i~m~~L~ 186 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK----E-LPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENH-IAMKRLK 186 (565)
T ss_pred hhhhhhhhcccccee----e-cCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHH-HHHHHHH
Confidence 566666666555432 1 234456778888899999999999999999999999999999999999988 6699999
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCC--CCcchhhhcCCCCCCCeEEEecccc
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALH--PCCCTEDILGRLPNLRNLRIWGDLS 574 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~ 574 (798)
+||...|-++.+|+.++.|.+|..|++.+|.+.. +|.++.+..|.+|+++. -...+.+...++++|..|++..+
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-- 262 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-- 262 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc--
Confidence 9999999999999999999999999999998864 78888888888888874 34455664668888889998887
Q ss_pred hhhhhHHHhccCCCCCCEEEEecCCC---CCCCceeee------------------------------------------
Q 048418 575 YYQFLLSQSLCRLSCLESLKLVNESK---MPAFSKIVL------------------------------------------ 609 (798)
Q Consensus 575 ~~~~~l~~~l~~l~~L~~L~l~~n~i---~~~L~~L~l------------------------------------------ 609 (798)
.....|..++.+.+|+.|++++|+| |++|-.+++
T Consensus 263 -klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se 341 (565)
T KOG0472|consen 263 -KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE 341 (565)
T ss_pred -ccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence 6777888888888899999988875 555555544
Q ss_pred -----------ecC-C--CCCC--------------------------eeEEEEEeccCC--------------------
Q 048418 610 -----------VEY-Q--FPPR--------------------------LTHLSFSNTELM-------------------- 629 (798)
Q Consensus 610 -----------~~~-~--~l~~--------------------------L~~L~L~~~~l~-------------------- 629 (798)
|.. . ...+ .+.++++.|++.
T Consensus 342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred ccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc
Confidence 000 0 0111 334444444432
Q ss_pred ---CCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCC
Q 048418 630 ---EDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMP 706 (798)
Q Consensus 630 ---~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp 706 (798)
+.++..++.+++|..|++++|-+.+ +|..++.+..|+.|+++.| .+..+|........|+.+-.+++. ++.+|
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nq-i~~vd 497 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQ-IGSVD 497 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhhh--cchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcccc-ccccC
Confidence 1122233445555555555333332 3444444555555555554 344444444334444444444333 34444
Q ss_pred c-cCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccc
Q 048418 707 E-QLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQIT 755 (798)
Q Consensus 707 ~-~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~ 755 (798)
. ++.++.+|..|++.+|. ++..++.++++.+|++|++.+|.+.
T Consensus 498 ~~~l~nm~nL~tLDL~nNd------lq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNND------LQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHhhhhhhcceeccCCCc------hhhCChhhccccceeEEEecCCccC
Confidence 3 58889999999999996 4567888899999999999999998
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=1.9e-20 Score=208.95 Aligned_cols=329 Identities=21% Similarity=0.194 Sum_probs=199.7
Q ss_pred CCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcE
Q 048418 418 SHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYT 497 (798)
Q Consensus 418 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 497 (798)
-+|.+|.+.++.... .+.-+..+..|+.|+++.|.|.+.|.+++++.+|++|+|.+|.+..+|.++ ..+.+|+.
T Consensus 45 v~L~~l~lsnn~~~~-----fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~-~~lknl~~ 118 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISS-----FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI-SELKNLQY 118 (1081)
T ss_pred eeeEEeecccccccc-----CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH-Hhhhcccc
Confidence 346666666655422 223345566677777777777777766777777777777777777777776 77777777
Q ss_pred eeccccccccchhhhcccccCceeccCCc-------------------ccCCCCCC-CC-------------------CC
Q 048418 498 LDMPFSYIDHTADEFWKMNKLKHLNFGSI-------------------TLPAHPGK-YC-------------------GS 538 (798)
Q Consensus 498 L~L~~~~l~~lp~~i~~L~~L~~L~L~~~-------------------~i~~~~~p-~i-------------------~~ 538 (798)
||+++|.+..+|..+..+..+..+..++| .+.. .++ .+ .+
T Consensus 119 LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~-~~~~~i~~l~~~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 119 LDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG-SFLIDIYNLTHQLDLRYNEMEVLDLSN 197 (1081)
T ss_pred cccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc-chhcchhhhheeeecccchhhhhhhhh
Confidence 77777766555543333333322222222 0000 000 00 01
Q ss_pred CCCcc------------------------------------------eeecCC--CCcchhhhcCCCCCCCeEEEecccc
Q 048418 539 LENLN------------------------------------------FISALH--PCCCTEDILGRLPNLRNLRIWGDLS 574 (798)
Q Consensus 539 L~~L~------------------------------------------~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~ 574 (798)
+..|+ .++++. -...+.. ++.|.+|+.|.+..+.
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w-i~~~~nle~l~~n~N~- 275 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW-IGACANLEALNANHNR- 275 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH-HHhcccceEecccchh-
Confidence 11111 111110 1123333 6778888888888773
Q ss_pred hhhhhH-----------------------HHhccCCCCCCEEEEecCCC---CCC--------Cceeee---------ec
Q 048418 575 YYQFLL-----------------------SQSLCRLSCLESLKLVNESK---MPA--------FSKIVL---------VE 611 (798)
Q Consensus 575 ~~~~~l-----------------------~~~l~~l~~L~~L~l~~n~i---~~~--------L~~L~l---------~~ 611 (798)
...+ |..+..+++|++|++..|++ |++ +..+.. ..
T Consensus 276 --l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 276 --LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred --HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 2333 33344566777777776653 110 000000 11
Q ss_pred C-CCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccc
Q 048418 612 Y-QFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPK 690 (798)
Q Consensus 612 ~-~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~ 690 (798)
. ...+.|+.|.+.+|.+++...+.+.++++|+.|+|++|.+.. .....+..++.|+.|+|++| .++.+|....+++.
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-FPASKLRKLEELEELNLSGN-KLTTLPDTVANLGR 431 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-CCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhh
Confidence 1 115678889999999998888999999999999999887754 12334567889999999997 78899988889999
Q ss_pred cceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCCCccc
Q 048418 691 LEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPSQR 766 (798)
Q Consensus 691 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~ 766 (798)
|++|...+|. +..+| .+..++.|+.++++.|.... ..++...+ -|+|++||+++|.-.......|..+.
T Consensus 432 L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~-~~l~~~~p----~p~LkyLdlSGN~~l~~d~~~l~~l~ 500 (1081)
T KOG0618|consen 432 LHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSE-VTLPEALP----SPNLKYLDLSGNTRLVFDHKTLKVLK 500 (1081)
T ss_pred hHHHhhcCCc-eeech-hhhhcCcceEEecccchhhh-hhhhhhCC----CcccceeeccCCcccccchhhhHHhh
Confidence 9999888776 44578 68889999999999886331 11122222 17899999999974333223333333
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.4e-16 Score=184.28 Aligned_cols=262 Identities=19% Similarity=0.124 Sum_probs=131.4
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCccc
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITL 528 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i 528 (798)
.+|+++++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++|+++.+|.. .++|+.|++++|.+
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 344555554444444443 2455555555555444431 24445555555544444432 23444454444444
Q ss_pred CCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceee
Q 048418 529 PAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIV 608 (798)
Q Consensus 529 ~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~ 608 (798)
.. +|.+ ...|..|++..+. +...-...++|+.|++++|. ...+|.. ..+|+.|++++|. ++.++
T Consensus 275 ~~--Lp~l--p~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~---L~~Lp~l---p~~L~~L~Ls~N~----L~~LP 338 (788)
T PRK15387 275 TH--LPAL--PSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQ---LASLPAL---PSELCKLWAYNNQ----LTSLP 338 (788)
T ss_pred hh--hhhc--hhhcCEEECcCCc--cccccccccccceeECCCCc---cccCCCC---cccccccccccCc----ccccc
Confidence 31 2210 1122223322110 00101123567777777762 2223321 2346666666655 22221
Q ss_pred eecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcc
Q 048418 609 LVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAM 688 (798)
Q Consensus 609 l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l 688 (798)
..+++|++|+|++|+++. .|.. .++|+.|++++|.+.. ++. ..++|+.|++++| .+..+|.. .
T Consensus 339 ----~lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~--LP~---l~~~L~~LdLs~N-~Lt~LP~l---~ 401 (788)
T PRK15387 339 ----TLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS--LPA---LPSGLKELIVSGN-RLTSLPVL---P 401 (788)
T ss_pred ----ccccccceEecCCCccCC-CCCC---Ccccceehhhcccccc--Ccc---cccccceEEecCC-cccCCCCc---c
Confidence 114567777777777653 2221 2466677777666653 232 2346777777776 45555532 3
Q ss_pred cccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCC
Q 048418 689 PKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSL 762 (798)
Q Consensus 689 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l 762 (798)
++|+.|++++|. +..+|.. ..+|+.|++++|.. ...+..+.++++|..+++++|.+++..|..+
T Consensus 402 s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~NqL------t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNR-LTSLPML---PSGLLSLSVYRNQL------TRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCc-CCCCCcc---hhhhhhhhhccCcc------cccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 567777777776 4456653 24566777777752 2233345567777777777777777666554
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=7.1e-17 Score=180.75 Aligned_cols=90 Identities=24% Similarity=0.307 Sum_probs=83.5
Q ss_pred HHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCc
Q 048418 440 KICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLK 519 (798)
Q Consensus 440 ~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 519 (798)
.+..+.-+|++|++++|.+..+|..|..+.+|+.|+++.|.+.+.|.++ +++.+|++|.|.+|.+..+|.++..+.+|+
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQ 117 (1081)
T ss_pred HHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhh-hhhhcchhheeccchhhcCchhHHhhhccc
Confidence 3444455599999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred eeccCCcccCC
Q 048418 520 HLNFGSITLPA 530 (798)
Q Consensus 520 ~L~L~~~~i~~ 530 (798)
+|+++.|.+..
T Consensus 118 ~LdlS~N~f~~ 128 (1081)
T KOG0618|consen 118 YLDLSFNHFGP 128 (1081)
T ss_pred ccccchhccCC
Confidence 99999999864
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=3.4e-15 Score=173.94 Aligned_cols=224 Identities=20% Similarity=0.243 Sum_probs=134.0
Q ss_pred ceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCc
Q 048418 447 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSI 526 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 526 (798)
.|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+ . .+|+.|+|++|.+..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-P--DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-h--ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 45555555555555554433 35555555555555555443 2 245555555555555554442 34555555555
Q ss_pred ccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCce
Q 048418 527 TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSK 606 (798)
Q Consensus 527 ~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~ 606 (798)
.+. ..+.. + .++|+.|++++| ....+|..+. ++|+.|++++|. ++.
T Consensus 273 ~L~----------------------~LP~~-l--~~sL~~L~Ls~N---~Lt~LP~~lp--~sL~~L~Ls~N~----Lt~ 318 (754)
T PRK15370 273 KIS----------------------CLPEN-L--PEELRYLSVYDN---SIRTLPAHLP--SGITHLNVQSNS----LTA 318 (754)
T ss_pred ccC----------------------ccccc-c--CCCCcEEECCCC---ccccCcccch--hhHHHHHhcCCc----ccc
Confidence 443 11222 2 246888888887 2333443332 467888888766 333
Q ss_pred eeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCC
Q 048418 607 IVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTG 686 (798)
Q Consensus 607 L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 686 (798)
++.. . +++|+.|++++|.++. .+..+ .++|+.|++++|.++. ++..+ .++|+.|+|++| .+..+|..+.
T Consensus 319 LP~~--l-~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N-~Lt~LP~~l~ 387 (754)
T PRK15370 319 LPET--L-PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV--LPETL--PPTITTLDVSRN-ALTNLPENLP 387 (754)
T ss_pred CCcc--c-cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc--CChhh--cCCcCEEECCCC-cCCCCCHhHH
Confidence 2211 1 5789999999998764 34434 2689999999887764 33322 368999999987 5667775433
Q ss_pred cccccceeeEeeCCCCCCCCccCC----CCCCCCEEEEecCcH
Q 048418 687 AMPKLEFLIINPCAYLKKMPEQLW----CIKSLNKFDCWWPQP 725 (798)
Q Consensus 687 ~l~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~l~~c~~ 725 (798)
++|+.|++++|.. ..+|..+. .++++..|++.+|+.
T Consensus 388 --~sL~~LdLs~N~L-~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 388 --AALQIMQASRNNL-VRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred --HHHHHHhhccCCc-ccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 4789999998874 46665443 457888999999974
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=1.3e-14 Score=169.09 Aligned_cols=249 Identities=21% Similarity=0.213 Sum_probs=132.5
Q ss_pred ceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCc
Q 048418 447 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSI 526 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 526 (798)
+..+|+++++.++.+|..+. ++|+.|+|++|.++.+|..+ . .+|++|++++|+++.+|..+. .+|+.|++++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l-~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENL-Q--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhh-c--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 34566666666666665553 36667777777666666655 2 366777777666666665443 35666666666
Q ss_pred ccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCce
Q 048418 527 TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSK 606 (798)
Q Consensus 527 ~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~ 606 (798)
.+.. +| .. +. ++|+.|++++| ....+|..+. ++|+.|++++|. |+.
T Consensus 252 ~L~~--LP--------------------~~-l~--s~L~~L~Ls~N---~L~~LP~~l~--~sL~~L~Ls~N~----Lt~ 297 (754)
T PRK15370 252 RITE--LP--------------------ER-LP--SALQSLDLFHN---KISCLPENLP--EELRYLSVYDNS----IRT 297 (754)
T ss_pred ccCc--CC--------------------hh-Hh--CCCCEEECcCC---ccCccccccC--CCCcEEECCCCc----ccc
Confidence 6531 22 11 21 24566666655 2223444332 366667666654 332
Q ss_pred eeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCC
Q 048418 607 IVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTG 686 (798)
Q Consensus 607 L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 686 (798)
++..+ .++|+.|++++|.++. .+..+ .++|+.|++++|.++. ++..+ .++|+.|++++| .+..+|..+
T Consensus 298 LP~~l---p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N-~L~~LP~~l- 365 (754)
T PRK15370 298 LPAHL---PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS--LPASL--PPELQVLDVSKN-QITVLPETL- 365 (754)
T ss_pred Ccccc---hhhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc--CChhh--cCcccEEECCCC-CCCcCChhh-
Confidence 21111 3456666666666542 22222 2466666666665554 23222 256777777666 344555433
Q ss_pred cccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCC-CcccCCCceeEeeccccccc
Q 048418 687 AMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFE-DKEQSIPPLAHFMEYESQIT 755 (798)
Q Consensus 687 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~-~~i~~l~~L~~l~l~~n~l~ 755 (798)
.++|+.|+|++|. +..+|..+. .+|+.|++++|... .++... ...+.+|++..+++.+|.++
T Consensus 366 -p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~L~---~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 -PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNNLV---RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCCcc---cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2566777777665 334565443 35666666666421 111111 11123456666666666654
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=4e-14 Score=164.01 Aligned_cols=135 Identities=20% Similarity=0.144 Sum_probs=95.5
Q ss_pred CCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCccc
Q 048418 563 NLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLL 642 (798)
Q Consensus 563 ~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 642 (798)
+|+.|.+++| ....+|. ...+|+.|++++|. |+.++ ..+++|+.|++++|.+.. .+.. .++|
T Consensus 323 ~L~~L~Ls~N---~L~~LP~---lp~~Lq~LdLS~N~----Ls~LP----~lp~~L~~L~Ls~N~L~~-LP~l---~~~L 384 (788)
T PRK15387 323 ELCKLWAYNN---QLTSLPT---LPSGLQELSVSDNQ----LASLP----TLPSELYKLWAYNNRLTS-LPAL---PSGL 384 (788)
T ss_pred cccccccccC---ccccccc---cccccceEecCCCc----cCCCC----CCCcccceehhhcccccc-Cccc---cccc
Confidence 4667777776 2333442 12478899998876 33321 115678889999988763 3322 3578
Q ss_pred ceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEec
Q 048418 643 QVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWW 722 (798)
Q Consensus 643 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 722 (798)
+.|++++|.++. ++. ..++|+.|++++| .+..+|.. ..+|+.|++++|. ++.+|..+..+++|+.|++++
T Consensus 385 ~~LdLs~N~Lt~--LP~---l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 385 KELIVSGNRLTS--LPV---LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEG 454 (788)
T ss_pred ceEEecCCcccC--CCC---cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCC
Confidence 999999888775 332 2468999999998 46777743 3578899999887 557999999999999999999
Q ss_pred CcH
Q 048418 723 PQP 725 (798)
Q Consensus 723 c~~ 725 (798)
|+.
T Consensus 455 N~L 457 (788)
T PRK15387 455 NPL 457 (788)
T ss_pred CCC
Confidence 973
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=6.3e-16 Score=140.38 Aligned_cols=152 Identities=21% Similarity=0.233 Sum_probs=131.0
Q ss_pred hccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceec
Q 048418 443 EMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLN 522 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 522 (798)
-.+.+.+.|.|+.|.++.+|..|..+.+|+.|++.+|+++++|.++ +.+++|+.|+++-|.+..+|.+++.++-|..||
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 4567788899999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCCcccCCCCCC-CCCCCCCcceeecCC--CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCC
Q 048418 523 FGSITLPAHPGK-YCGSLENLNFISALH--PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNES 599 (798)
Q Consensus 523 L~~~~i~~~~~p-~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~ 599 (798)
+.+|++....+| .+-.+++|+.+++++ -...+.+ ++++++|+.|.+..+ ..-.+|..++.+..|+.|.+.+|.
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhcccce
Confidence 999999888888 777888888888875 3445667 888888888888876 556677777777777777777765
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.44 E-value=1.5e-14 Score=147.91 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=94.0
Q ss_pred cccCCCCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-cCcccccCcCccceEEecC-CCccccChhhh
Q 048418 412 YLDDYDSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNI-PSLKSLPPSLL 489 (798)
Q Consensus 412 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~-~~i~~lp~~i~ 489 (798)
++...++....+.+..+.. ..+++..|+.+++||.|||+.|.|+ --|..|..+..|..|-+-+ |+|+.+|...|
T Consensus 61 VP~~LP~~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcccCCCcceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 4455577778888877766 4688899999999999999999999 5578899999988887766 88999999999
Q ss_pred hCCCCCcEeeccccccccc-hhhhcccccCceeccCCcccC
Q 048418 490 SNLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHLNFGSITLP 529 (798)
Q Consensus 490 ~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~ 529 (798)
++|..||.|.+.-|.+.-+ ...+..|++|..|.+.+|.+.
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 9999999999988877666 456778888888888777553
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=2.6e-14 Score=154.06 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=45.0
Q ss_pred HHHhhccCceeEEEecCcccc-----cCcccccCcCccceEEecCCCccc-------cChhhhhCCCCCcEeeccccccc
Q 048418 439 EKICEMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLKS-------LPPSLLSNLPNLYTLDMPFSYID 506 (798)
Q Consensus 439 ~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-------lp~~i~~~L~~L~~L~L~~~~l~ 506 (798)
...+..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+ .++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCC
Confidence 345555666666666666652 344455555566666666654442 12222 44555555555555443
Q ss_pred -cchhhhccccc---CceeccCCccc
Q 048418 507 -HTADEFWKMNK---LKHLNFGSITL 528 (798)
Q Consensus 507 -~lp~~i~~L~~---L~~L~L~~~~i 528 (798)
..+..+..+.+ |++|++++|.+
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCcc
Confidence 22333333333 55555555444
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=4e-14 Score=144.88 Aligned_cols=251 Identities=16% Similarity=0.152 Sum_probs=142.7
Q ss_pred eeEEEecCcccccCcc-cccCcCccceEEecCCCccccChhhhhCCCCCcEeeccc-cccccchh-hhcccccCceeccC
Q 048418 448 LRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPF-SYIDHTAD-EFWKMNKLKHLNFG 524 (798)
Q Consensus 448 Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp~-~i~~L~~L~~L~L~ 524 (798)
-..+.|..|.|+.+|+ +|+.+++||.|+|++|.|+.+-+..|..|.+|-.|-+.+ |+|+.+|. .+++|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 4567788888887765 477888888888888888877777778888877777766 57888875 46788888888777
Q ss_pred CcccCCCCCC-CCCCCCCcceeecCC--CCcchhhhcCCCCCCCeEEEecccc----------hhhhhHHHhccCCCCCC
Q 048418 525 SITLPAHPGK-YCGSLENLNFISALH--PCCCTEDILGRLPNLRNLRIWGDLS----------YYQFLLSQSLCRLSCLE 591 (798)
Q Consensus 525 ~~~i~~~~~p-~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~----------~~~~~l~~~l~~l~~L~ 591 (798)
-|++. +... .+..|++|..+.+.+ ........+..+..++.+++..+.- ......|..++......
T Consensus 149 an~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 77664 2122 444555555555442 1122221244555555555444320 00001111111111111
Q ss_pred EEEEecC---CC-----CCCCceeee---------------ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEe
Q 048418 592 SLKLVNE---SK-----MPAFSKIVL---------------VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLK 648 (798)
Q Consensus 592 ~L~l~~n---~i-----~~~L~~L~l---------------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 648 (798)
...+.+. .+ -.+++++.- .|.. +++|++|++++|+++.....+|.++..++.|.|.
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 1111110 00 000111100 2334 6777777777777776666777777777777777
Q ss_pred eccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCC
Q 048418 649 QNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAY 701 (798)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 701 (798)
.|.+.... ...+.++..|+.|+|.+|....--|..+..+.+|.+|.+-.|+.
T Consensus 307 ~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 307 RNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchHHHHH-HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 77654321 23355677777777777643333355566667777777766554
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=3.7e-14 Score=152.93 Aligned_cols=281 Identities=20% Similarity=0.177 Sum_probs=172.6
Q ss_pred EEEecCcccc--cCcccccCcCccceEEecCCCcc-----ccChhhhhCCCCCcEeecccccccc-------chhhhccc
Q 048418 450 VLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLK-----SLPPSLLSNLPNLYTLDMPFSYIDH-------TADEFWKM 515 (798)
Q Consensus 450 ~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l~~-------lp~~i~~L 515 (798)
.|+|.++.++ ..+..+..+.+|++|+++++.++ .++..+ ...++|++|+++++.+.. ++..+.++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3566666664 45556677788999999998874 466666 778889999998885542 35567788
Q ss_pred ccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccc--hhhhhHHHhccCC-CCCCE
Q 048418 516 NKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLS--YYQFLLSQSLCRL-SCLES 592 (798)
Q Consensus 516 ~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~l~~~l~~l-~~L~~ 592 (798)
++|++|++++|.+... . ...+...... ++|+.|++++|.- .....+...+..+ ++|+.
T Consensus 81 ~~L~~L~l~~~~~~~~-~-----------------~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 81 CGLQELDLSDNALGPD-G-----------------CGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred CceeEEEccCCCCChh-H-----------------HHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 8999999988877520 0 0111110222 5588888887741 1122344456666 78888
Q ss_pred EEEecCCCCC-CCceeeeecCCCCCCeeEEEEEeccCCCCCc----cccccCcccceEEEeeccccCCe---eeeCCCCC
Q 048418 593 LKLVNESKMP-AFSKIVLVEYQFPPRLTHLSFSNTELMEDPM----PALEKMPLLQVLKLKQNSYSGRK---LTCGSDGF 664 (798)
Q Consensus 593 L~l~~n~i~~-~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~~~---~~~~~~~~ 664 (798)
|++++|.+-. ....+.-.+.. +++|++|++++|.+.+... ..+..+++|+.|++++|.+.+.. +...+..+
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRA-NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHh-CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 8888765210 11111112333 6788888888888764332 23445678999999888765432 22334567
Q ss_pred ccccEEEeecCCCCCcc-eec-CC----cccccceeeEeeCCCC----CCCCccCCCCCCCCEEEEecCcHHHHHHHhcC
Q 048418 665 PNLKVLHLKSMLWLEEW-TMG-TG----AMPKLEFLIINPCAYL----KKMPEQLWCIKSLNKFDCWWPQPELRQKLREF 734 (798)
Q Consensus 665 ~~L~~L~L~~~~~l~~l-~~~-~~----~l~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~ 734 (798)
++|++|++++|+ +... ... .. ..+.|+.|++++|... ..++..+..+++|+.+++++|+..-.. ....
T Consensus 221 ~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~-~~~~ 298 (319)
T cd00116 221 KSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG-AQLL 298 (319)
T ss_pred CCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH-HHHH
Confidence 889999999875 3321 111 11 2478999999998754 123445566688999999998743221 1111
Q ss_pred CCcccCC-CceeEeeccccc
Q 048418 735 EDKEQSI-PPLAHFMEYESQ 753 (798)
Q Consensus 735 ~~~i~~l-~~L~~l~l~~n~ 753 (798)
...+... +.|..+++.+|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 299 AESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhhcCCchhhcccCCCC
Confidence 1111123 577777777765
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=6.2e-15 Score=133.96 Aligned_cols=159 Identities=21% Similarity=0.254 Sum_probs=108.0
Q ss_pred cccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCcccCCCCCC-CCCCCCCc
Q 048418 464 GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGK-YCGSLENL 542 (798)
Q Consensus 464 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L 542 (798)
.+.++.+.+.|.|++|+++.+|+.+ ..|.+|+.|++.+|+++++|..++.+++|++|+++-|.+.. +| ++++++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc--CccccCCCchh
Confidence 4556789999999999999999999 99999999999999999999999999999999999888742 55 55555555
Q ss_pred ceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEE
Q 048418 543 NFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLS 622 (798)
Q Consensus 543 ~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~ 622 (798)
+.+++ +++. .....+|..+..+..|+.|.++.|+ ++.++..++. +++|+.|.
T Consensus 105 evldl----------------------tynn-l~e~~lpgnff~m~tlralyl~dnd----fe~lp~dvg~-lt~lqil~ 156 (264)
T KOG0617|consen 105 EVLDL----------------------TYNN-LNENSLPGNFFYMTTLRALYLGDND----FEILPPDVGK-LTNLQILS 156 (264)
T ss_pred hhhhc----------------------cccc-cccccCCcchhHHHHHHHHHhcCCC----cccCChhhhh-hcceeEEe
Confidence 55544 4431 1222334444444445555555554 1222112233 55666666
Q ss_pred EEeccCCCCCccccccCcccceEEEeeccccC
Q 048418 623 FSNTELMEDPMPALEKMPLLQVLKLKQNSYSG 654 (798)
Q Consensus 623 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 654 (798)
+..|.+. ..|..++.+..|+.|++.+|.++.
T Consensus 157 lrdndll-~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 157 LRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred eccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence 6666543 456666777777777777666553
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.26 E-value=6.1e-12 Score=149.19 Aligned_cols=239 Identities=24% Similarity=0.159 Sum_probs=142.4
Q ss_pred ccCceeEEEecCcc--cccCcc-cccCcCccceEEecCCC-ccccChhhhhCCCCCcEeeccccccccchhhhcccccCc
Q 048418 444 MFKLLRVLDLGSLV--LIQYPS-GIENLFLLRYLKLNIPS-LKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLK 519 (798)
Q Consensus 444 ~~~~Lr~L~L~~~~--i~~lp~-~i~~L~~Lr~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 519 (798)
.++.|++|-+.++. +..++. .|..+++||+|+|++|. +.++|.+| ++|-+|++|+++++.+..+|.++++|.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 44568888888875 444443 36778899999999764 77899998 889999999999998889999999999999
Q ss_pred eeccCCcccCCCCCCCC-CCCCCcceeecCC-----CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCC--
Q 048418 520 HLNFGSITLPAHPGKYC-GSLENLNFISALH-----PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLE-- 591 (798)
Q Consensus 520 ~L~L~~~~i~~~~~p~i-~~L~~L~~l~~~~-----~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~-- 591 (798)
+||+..+.... .+|++ ..|++|+.+.+.. +...+.+ +.++.+|+.+.+..... .+...+..+..|.
T Consensus 622 ~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~e-l~~Le~L~~ls~~~~s~----~~~e~l~~~~~L~~~ 695 (889)
T KOG4658|consen 622 YLNLEVTGRLE-SIPGILLELQSLRVLRLPRSALSNDKLLLKE-LENLEHLENLSITISSV----LLLEDLLGMTRLRSL 695 (889)
T ss_pred eeccccccccc-cccchhhhcccccEEEeeccccccchhhHHh-hhcccchhhheeecchh----HhHhhhhhhHHHHHH
Confidence 99888765432 23533 3577777776653 3445556 66777777777755421 1111112222222
Q ss_pred --EEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccc-----c-CcccceEEEeeccccCCeeeeCCCC
Q 048418 592 --SLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALE-----K-MPLLQVLKLKQNSYSGRKLTCGSDG 663 (798)
Q Consensus 592 --~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~-----~-l~~L~~L~L~~~~~~~~~~~~~~~~ 663 (798)
.+.+.+ .....+...+.. +.+|+.|.+.+|........... . +|++..+.+.++.... .+.....
T Consensus 696 ~~~l~~~~----~~~~~~~~~~~~-l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r--~l~~~~f 768 (889)
T KOG4658|consen 696 LQSLSIEG----CSKRTLISSLGS-LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR--DLTWLLF 768 (889)
T ss_pred hHhhhhcc----cccceeeccccc-ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc--ccchhhc
Confidence 222111 112333334445 78888888888876433222211 1 3344444443222111 1222234
Q ss_pred CccccEEEeecCCCCCcceecCCcccccceeeE
Q 048418 664 FPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLII 696 (798)
Q Consensus 664 ~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l 696 (798)
.|+|+.|.+.+|+.++.+......+..++.+.+
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~ 801 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELIL 801 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEe
Confidence 678888888888777766544444444544333
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.6e-10 Score=118.91 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=75.9
Q ss_pred CCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCC-CCCCCceeeeecCCCCCCeeEEEEEeccCCCC-Ccccccc
Q 048418 561 LPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNES-KMPAFSKIVLVEYQFPPRLTHLSFSNTELMED-PMPALEK 638 (798)
Q Consensus 561 l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~-i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~-~~~~l~~ 638 (798)
+++|+.|.++.|. .....+...+..+++|+.|.+..|+ +...-. ...- +..|++|+|++|++... .....+.
T Consensus 196 l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~----~~~i-~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 196 LSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKAT----STKI-LQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred hhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecc----hhhh-hhHHhhccccCCccccccccccccc
Confidence 3445555555553 1122333334445555555555542 100000 0011 56777788887776542 2355678
Q ss_pred CcccceEEEeeccccCCeeeeC-----CCCCccccEEEeecCCCCCccee--cCCcccccceeeEeeCCCC
Q 048418 639 MPLLQVLKLKQNSYSGRKLTCG-----SDGFPNLKVLHLKSMLWLEEWTM--GTGAMPKLEFLIINPCAYL 702 (798)
Q Consensus 639 l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l 702 (798)
+|.|+.|+++.+.+.....+.. ...||+|++|++..|+ +..|+. .+..+++|+.|.+..+...
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhccccccc
Confidence 8888888888777655433332 3568889999888874 444432 3446677888887766644
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.1e-09 Score=104.73 Aligned_cols=129 Identities=23% Similarity=0.245 Sum_probs=46.8
Q ss_pred hccCceeEEEecCcccccCccccc-CcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhh-cccccCce
Q 048418 443 EMFKLLRVLDLGSLVLIQYPSGIE-NLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEF-WKMNKLKH 520 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~ 520 (798)
.+...+|.|+|+++.|+.+. .++ .+.+|+.|++++|.+++++. + ..+++|++|++++|.++.+++.+ ..+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-L-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC-c-cChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 34456889999999988664 455 57889999999999998864 4 78899999999999998887655 46899999
Q ss_pred eccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhh-hhHHHhccCCCCCCEEEE
Q 048418 521 LNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQ-FLLSQSLCRLSCLESLKL 595 (798)
Q Consensus 521 L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~l~~~l~~l~~L~~L~l 595 (798)
|++++|.+.. ...+.. +..+++|+.|++.+|.-... ..-...+..+++|+.|+-
T Consensus 93 L~L~~N~I~~--------------------l~~l~~-L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISD--------------------LNELEP-LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---S--------------------CCCCGG-GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCC--------------------hHHhHH-HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999988863 222334 67788888888887741111 111223445566666653
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.1e-10 Score=118.42 Aligned_cols=107 Identities=17% Similarity=0.075 Sum_probs=59.8
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc---cCcccccCcCccceEEecCCCccccChhh-hhCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI---QYPSGIENLFLLRYLKLNIPSLKSLPPSL-LSNL 492 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~---~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i-~~~L 492 (798)
..+||.+.+.++.... .........|+++|.|||+.|-+. .+..-...|++|+.|+|+.|.+.....+. -..+
T Consensus 120 ~kkL~~IsLdn~~V~~---~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVED---AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccc---cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 5667777766665422 111145566777777777776544 33344556777777777777655322211 1245
Q ss_pred CCCcEeeccccccc--cchhhhcccccCceeccCCc
Q 048418 493 PNLYTLDMPFSYID--HTADEFWKMNKLKHLNFGSI 526 (798)
Q Consensus 493 ~~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~ 526 (798)
++|+.|.|+.|+++ .+-..+...|+|..|+|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 66667777776543 22333445566666666665
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.86 E-value=2.2e-10 Score=116.52 Aligned_cols=253 Identities=20% Similarity=0.185 Sum_probs=146.5
Q ss_pred hHHHhhccCceeEEEecCcccc-----cCcccccCcCccceEEecCCC---c-cccChhh------hhCCCCCcEeeccc
Q 048418 438 WEKICEMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPS---L-KSLPPSL------LSNLPNLYTLDMPF 502 (798)
Q Consensus 438 ~~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~---i-~~lp~~i------~~~L~~L~~L~L~~ 502 (798)
.......+..+..|+|++|.+. .+.+.+.+.++|+..+++.-. . .++|+.+ +-..++|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3455677888899999999875 455567777888888888621 1 2555533 13556899999998
Q ss_pred ccc--c---cchhhhcccccCceeccCCcccCCCCCCCCC-CCCCcceeecCCCCcchhhhcCCCCCCCeEEEeccc--c
Q 048418 503 SYI--D---HTADEFWKMNKLKHLNFGSITLPAHPGKYCG-SLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL--S 574 (798)
Q Consensus 503 ~~l--~---~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~-~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~ 574 (798)
|-+ . .+-.-+.++..|+||.|.+|.+....-..++ .|..|. .... .++-++|+.+....|. +
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~---------~~kk-~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA---------VNKK-AASKPKLRVFICGRNRLEN 171 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH---------HHhc-cCCCcceEEEEeecccccc
Confidence 833 2 2335577788899998888876421000111 122221 1112 4556778888887774 2
Q ss_pred hhhhhHHHhccCCCCCCEEEEecCCC-CCCCceeeeecCCCCCCeeEEEEEeccCCCCC----ccccccCcccceEEEee
Q 048418 575 YYQFLLSQSLCRLSCLESLKLVNESK-MPAFSKIVLVEYQFPPRLTHLSFSNTELMEDP----MPALEKMPLLQVLKLKQ 649 (798)
Q Consensus 575 ~~~~~l~~~l~~l~~L~~L~l~~n~i-~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~ 649 (798)
.....+...+...+.|+.+.+..|.| |+..+-+...+.. +++|+.|+|.+|.++... ...+..+|+|+.|++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 23334555666677788888877765 3333222223344 677777777777665432 23345566677777776
Q ss_pred ccccCCeee----eCCCCCccccEEEeecCCCCC----cceecCCcccccceeeEeeCCC
Q 048418 650 NSYSGRKLT----CGSDGFPNLKVLHLKSMLWLE----EWTMGTGAMPKLEFLIINPCAY 701 (798)
Q Consensus 650 ~~~~~~~~~----~~~~~~~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~ 701 (798)
|.+...... ....++|+|++|.+.+|..-. .+.......|.|+.|+|++|..
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 665543211 111336667777766653221 1122233466666666666654
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.82 E-value=3.6e-10 Score=117.34 Aligned_cols=303 Identities=16% Similarity=0.115 Sum_probs=166.2
Q ss_pred CceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcc-cc--cCcccccCcCccceEEecCC-Ccc-ccChhhhhCCC
Q 048418 419 HLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLV-LI--QYPSGIENLFLLRYLKLNIP-SLK-SLPPSLLSNLP 493 (798)
Q Consensus 419 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-i~--~lp~~i~~L~~Lr~L~L~~~-~i~-~lp~~i~~~L~ 493 (798)
.+|.|.+.|+.... ...+..+-..++++..|.+.+|. ++ .+...-..+.+|++|++..| .++ ..-..+...++
T Consensus 139 ~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 45566666554422 23344455666666666666665 33 22222234566666666664 244 11122224566
Q ss_pred CCcEeecccc-cccc--chhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEe
Q 048418 494 NLYTLDMPFS-YIDH--TADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIW 570 (798)
Q Consensus 494 ~L~~L~L~~~-~l~~--lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~ 570 (798)
+|++|+++.| .+.. +-.....+.+|+.+.+.+|.-.. ...+..+-+.+..+.++++.
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--------------------le~l~~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--------------------LEALLKAAAYCLEILKLNLQ 276 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--------------------HHHHHHHhccChHhhccchh
Confidence 6666666666 3332 21222333334444333221100 00111101223334444444
Q ss_pred cccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeee-ecCCCCCCeeEEEEEecc-CCCCCccccc-cCcccceEEE
Q 048418 571 GDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVL-VEYQFPPRLTHLSFSNTE-LMEDPMPALE-KMPLLQVLKL 647 (798)
Q Consensus 571 ~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~L 647 (798)
.|.......+-..-..+..|+.|..++ +.++....+ .++...++|+.|.++.|+ ++......++ +++.|+.+++
T Consensus 277 ~c~~lTD~~~~~i~~~c~~lq~l~~s~---~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 277 HCNQLTDEDLWLIACGCHALQVLCYSS---CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred hhccccchHHHHHhhhhhHhhhhcccC---CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 442111222222223455666666666 444444444 233337889999998885 4444445554 6889999999
Q ss_pred eeccccCCe-eeeCCCCCccccEEEeecCCCCCcc-----eecCCcccccceeeEeeCCCCCC-CCccCCCCCCCCEEEE
Q 048418 648 KQNSYSGRK-LTCGSDGFPNLKVLHLKSMLWLEEW-----TMGTGAMPKLEFLIINPCAYLKK-MPEQLWCIKSLNKFDC 720 (798)
Q Consensus 648 ~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l 720 (798)
.++...... +.....++|.|+.|.+++|..++.- ...-..+..|+.+.+++|+.+.+ .-+.+..+++|+.+++
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 876543322 3334467999999999998766533 33446788999999999997652 3456778899999999
Q ss_pred ecCcHHHHHHHhcCCCcccCCCceeEeec
Q 048418 721 WWPQPELRQKLREFEDKEQSIPPLAHFME 749 (798)
Q Consensus 721 ~~c~~~~~~~l~~~~~~i~~l~~L~~l~l 749 (798)
.+|..-+.+.+.... .++|++++.-+
T Consensus 434 ~~~q~vtk~~i~~~~---~~lp~i~v~a~ 459 (483)
T KOG4341|consen 434 IDCQDVTKEAISRFA---THLPNIKVHAY 459 (483)
T ss_pred echhhhhhhhhHHHH---hhCccceehhh
Confidence 999755444444322 36777766543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=3.1e-10 Score=121.78 Aligned_cols=153 Identities=23% Similarity=0.211 Sum_probs=120.4
Q ss_pred HHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccC
Q 048418 439 EKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKL 518 (798)
Q Consensus 439 ~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L 518 (798)
+..+..|..|..|.|+.|.+..+|..++++..|.||+|+.|+++.+|..+ +.| -|+.|-+++|+++.+|+.++.+..|
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~l-pLkvli~sNNkl~~lp~~ig~~~tl 168 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-CDL-PLKVLIVSNNKLTSLPEEIGLLPTL 168 (722)
T ss_pred chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-hcC-cceeEEEecCccccCCcccccchhH
Confidence 34456777888888999888889999999999999999999999999988 766 4899999999999999999988999
Q ss_pred ceeccCCcccCCCCCC-CCCCCCCcceeecCC--CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEE
Q 048418 519 KHLNFGSITLPAHPGK-YCGSLENLNFISALH--PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKL 595 (798)
Q Consensus 519 ~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l 595 (798)
.+||.+.|.+.. +| .++.|..|+.+.+.. ....+.+ +..| .|..|++++| ....+|..+.++++|+.|-|
T Consensus 169 ~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~~lp~E-l~~L-pLi~lDfScN---kis~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 169 AHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSL-PLIRLDFSCN---KISYLPVDFRKMRHLQVLQL 241 (722)
T ss_pred HHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhhhCCHH-HhCC-ceeeeecccC---ceeecchhhhhhhhheeeee
Confidence 999999988743 66 677777777666652 3455666 6643 4777887776 66677777888888888888
Q ss_pred ecCCC
Q 048418 596 VNESK 600 (798)
Q Consensus 596 ~~n~i 600 (798)
.+|-+
T Consensus 242 enNPL 246 (722)
T KOG0532|consen 242 ENNPL 246 (722)
T ss_pred ccCCC
Confidence 77653
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.2e-09 Score=108.38 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=38.4
Q ss_pred CCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCC
Q 048418 615 PPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSML 676 (798)
Q Consensus 615 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 676 (798)
+-|+++|.|++|.+ +.+..++.+-+|..|++++|.+....-...++++|.|+.|.|.+|+
T Consensus 351 LGNIKtL~La~N~i--E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKI--ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hcCEeeeehhhhhH--hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 66777777777765 3455666677777777777766543334455666666666666654
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=6.1e-09 Score=115.83 Aligned_cols=87 Identities=28% Similarity=0.376 Sum_probs=70.3
Q ss_pred hhccCceeEEEecCcccccCcccccCcC-ccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCce
Q 048418 442 CEMFKLLRVLDLGSLVLIQYPSGIENLF-LLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKH 520 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~ 520 (798)
...++.+..|++.++.++.+|.....+. +|++|++++|.+..+|..+ +.+++|+.|++++|.+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3445778888888888888887777774 8888888888888887777 8888888888888888888887778888888
Q ss_pred eccCCcccC
Q 048418 521 LNFGSITLP 529 (798)
Q Consensus 521 L~L~~~~i~ 529 (798)
|++++|.+.
T Consensus 191 L~ls~N~i~ 199 (394)
T COG4886 191 LDLSGNKIS 199 (394)
T ss_pred eeccCCccc
Confidence 888888775
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.69 E-value=6.3e-09 Score=103.33 Aligned_cols=129 Identities=23% Similarity=0.231 Sum_probs=88.9
Q ss_pred cCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCC--CCCCceeeeecCCCCCCeeEEEEEeccCCCCCccc
Q 048418 558 LGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK--MPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPA 635 (798)
Q Consensus 558 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i--~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~ 635 (798)
+.....|++|++++| ....+..+..-.+.++.|+++.|+| -.+|. . +++|++|+|++|.++ ....+
T Consensus 280 ~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa-------~-L~~L~~LDLS~N~Ls-~~~Gw 347 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNRIRTVQNLA-------E-LPQLQLLDLSGNLLA-ECVGW 347 (490)
T ss_pred cchHhhhhhcccccc---chhhhhhhhhhccceeEEeccccceeeehhhh-------h-cccceEeecccchhH-hhhhh
Confidence 445567888888887 5666667777778888888888773 22232 2 788888888888764 22333
Q ss_pred cccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcc--eecCCcccccceeeEeeCCCC
Q 048418 636 LEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEW--TMGTGAMPKLEFLIINPCAYL 702 (798)
Q Consensus 636 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l 702 (798)
-..+-|.+.|.|.+|.+.. ...++.+-+|..|++++| +++.+ -..+|++|+|+.+.+.+||.-
T Consensus 348 h~KLGNIKtL~La~N~iE~---LSGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIET---LSGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred HhhhcCEeeeehhhhhHhh---hhhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 4467788888888777654 233456677888888887 44443 235788888888888888843
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=9.4e-09 Score=98.44 Aligned_cols=108 Identities=23% Similarity=0.274 Sum_probs=45.6
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
+.++|.|.+.++.... ++..-..+.+|++|+|++|.|+.++ .+..+++|+.|++++|.++++++.+...+++|+
T Consensus 18 ~~~~~~L~L~~n~I~~-----Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-----IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccc-----ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 5678999998887632 2222235789999999999999875 688899999999999999999876634799999
Q ss_pred Eeeccccccccch--hhhcccccCceeccCCcccCC
Q 048418 497 TLDMPFSYIDHTA--DEFWKMNKLKHLNFGSITLPA 530 (798)
Q Consensus 497 ~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~i~~ 530 (798)
+|++++|++..+. ..+..+++|++|++.+|.+..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999999876653 457889999999999998863
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1.2e-08 Score=113.57 Aligned_cols=192 Identities=27% Similarity=0.292 Sum_probs=121.1
Q ss_pred EEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCC-CCcEeeccccccccchhhhcccccCceeccCCccc
Q 048418 450 VLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLP-NLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITL 528 (798)
Q Consensus 450 ~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~-~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i 528 (798)
.|+++.+.+...+..+..+..++.|++.++.++++|+.. +.+. +|+.|+++++.+..+|..++.+++|+.|++++|.+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 577777777555556677788999999999999999988 7774 99999999999999988899999999999999988
Q ss_pred CCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceee
Q 048418 529 PAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIV 608 (798)
Q Consensus 529 ~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~ 608 (798)
.. +| .. .+.+++|+.|+++++ ....+|..+....+|+.|.++.|.+ ....
T Consensus 176 ~~--l~--------------------~~-~~~~~~L~~L~ls~N---~i~~l~~~~~~~~~L~~l~~~~N~~----~~~~ 225 (394)
T COG4886 176 SD--LP--------------------KL-LSNLSNLNNLDLSGN---KISDLPPEIELLSALEELDLSNNSI----IELL 225 (394)
T ss_pred hh--hh--------------------hh-hhhhhhhhheeccCC---ccccCchhhhhhhhhhhhhhcCCcc----eecc
Confidence 53 22 11 225556666666665 4444444444444566666655421 1110
Q ss_pred eecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCC
Q 048418 609 LVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLW 677 (798)
Q Consensus 609 l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 677 (798)
..+.. +.++..+.+.++++. ..+..++.+++++.|++++|.++.. +. ++.+.+|+.|+++++..
T Consensus 226 ~~~~~-~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i--~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 226 SSLSN-LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI--SS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hhhhh-cccccccccCCceee-eccchhccccccceecccccccccc--cc-ccccCccCEEeccCccc
Confidence 01122 445555555555432 2244555566666666665555442 11 45556666666666543
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.5e-09 Score=107.89 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=59.5
Q ss_pred CceeEEEecCcccc--cCcccccCcCccceEEecCCCcc-ccChhhhhCCCCCcEeecccc-ccccc--hhhhcccccCc
Q 048418 446 KLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLK-SLPPSLLSNLPNLYTLDMPFS-YIDHT--ADEFWKMNKLK 519 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~-~l~~l--p~~i~~L~~L~ 519 (798)
..|+.|||++..|+ .+-.-+..|.+|+.|+|.++.+. .+-..+ .+-.+|+.|+|+.| ++++. .--+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35888888888876 55555677888888888888776 555566 77788888888888 56543 23356777777
Q ss_pred eeccCCcccC
Q 048418 520 HLNFGSITLP 529 (798)
Q Consensus 520 ~L~L~~~~i~ 529 (798)
.|++++|.+.
T Consensus 264 ~LNlsWc~l~ 273 (419)
T KOG2120|consen 264 ELNLSWCFLF 273 (419)
T ss_pred hcCchHhhcc
Confidence 7777777654
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.64 E-value=8.1e-09 Score=105.25 Aligned_cols=241 Identities=20% Similarity=0.150 Sum_probs=157.2
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcc---c-ccCccc-------ccCcCccceEEecCCCcc-cc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLV---L-IQYPSG-------IENLFLLRYLKLNIPSLK-SL 484 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~---i-~~lp~~-------i~~L~~Lr~L~L~~~~i~-~l 484 (798)
...+..+.++++.....-..++...+.+-+.||..++++-. . ..+|+. +-.+++|++|+||.|-+. +-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 56677788888766432335667788888999999998753 1 255543 345779999999999876 22
Q ss_pred Ch---hhhhCCCCCcEeeccccccccch--------------hhhcccccCceeccCCcccCCCCCCCCCCCCCcceeec
Q 048418 485 PP---SLLSNLPNLYTLDMPFSYIDHTA--------------DEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISA 547 (798)
Q Consensus 485 p~---~i~~~L~~L~~L~L~~~~l~~lp--------------~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~ 547 (798)
++ .++..++.|++|.|.+|.+.... +-+.+-++|+.+..++|++.+.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~---------------- 172 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG---------------- 172 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc----------------
Confidence 22 22378999999999999775432 2234557788887777776531
Q ss_pred CCCCcchhhhcCCCCCCCeEEEecccch--hhhhHHHhccCCCCCCEEEEecCCCCCCCc--eeeeecCCCCCCeeEEEE
Q 048418 548 LHPCCCTEDILGRLPNLRNLRIWGDLSY--YQFLLSQSLCRLSCLESLKLVNESKMPAFS--KIVLVEYQFPPRLTHLSF 623 (798)
Q Consensus 548 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~--~L~l~~~~~l~~L~~L~L 623 (798)
+...+..++...+.|+.+.+..+... ....+...+..+++|+.|+|..|-+ ..-- .+.-.+.. +++|+.|++
T Consensus 173 --ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtf-t~egs~~LakaL~s-~~~L~El~l 248 (382)
T KOG1909|consen 173 --GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTF-TLEGSVALAKALSS-WPHLRELNL 248 (382)
T ss_pred --cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchh-hhHHHHHHHHHhcc-cchheeecc
Confidence 11223333666677777777766421 2234556677788888888877642 0000 00002233 688999999
Q ss_pred EeccCCCCCcccc-----ccCcccceEEEeeccccCCe---eeeCCCCCccccEEEeecCCC
Q 048418 624 SNTELMEDPMPAL-----EKMPLLQVLKLKQNSYSGRK---LTCGSDGFPNLKVLHLKSMLW 677 (798)
Q Consensus 624 ~~~~l~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~ 677 (798)
++|.+.......+ ...|+|+.|.+.+|.++... +.......|.|+.|+|++|..
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9998766544333 34789999999998876432 223345589999999999854
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.9e-09 Score=107.12 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=17.5
Q ss_pred cCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEec
Q 048418 558 LGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVN 597 (798)
Q Consensus 558 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 597 (798)
+++-.+|+.|+++.+.......+.-.+.+++.|..|+++|
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsW 269 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSW 269 (419)
T ss_pred HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchH
Confidence 4444445555555443222222333334445555555554
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.56 E-value=3.9e-09 Score=109.73 Aligned_cols=283 Identities=17% Similarity=0.069 Sum_probs=183.4
Q ss_pred CceeEEEecCcc-cc--cCcccccCcCccceEEecCCC-cc-ccChhhhhCCCCCcEeecccc-ccccch--hhhccccc
Q 048418 446 KLLRVLDLGSLV-LI--QYPSGIENLFLLRYLKLNIPS-LK-SLPPSLLSNLPNLYTLDMPFS-YIDHTA--DEFWKMNK 517 (798)
Q Consensus 446 ~~Lr~L~L~~~~-i~--~lp~~i~~L~~Lr~L~L~~~~-i~-~lp~~i~~~L~~L~~L~L~~~-~l~~lp--~~i~~L~~ 517 (798)
..|+.|.+.|+. .. .+-....++++++.|++.++. ++ ..-.++...+++|++|++..| .++... .-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 358888898886 22 444455678888888888875 44 222333367889999999887 555442 23346889
Q ss_pred CceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEec
Q 048418 518 LKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVN 597 (798)
Q Consensus 518 L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 597 (798)
|++|++++|.--. +..+......+.+++.+...+|.....+.+...-..+.-+..+++..
T Consensus 218 L~~lNlSwc~qi~--------------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 218 LKYLNLSWCPQIS--------------------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred HHHhhhccCchhh--------------------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence 9999888874321 12222225566667777777775444444444444445555566444
Q ss_pred CCCCCCCceeeeecC-CCCCCeeEEEEEeccC-CCCCccccc-cCcccceEEEeecc-ccCCeeeeCCCCCccccEEEee
Q 048418 598 ESKMPAFSKIVLVEY-QFPPRLTHLSFSNTEL-MEDPMPALE-KMPLLQVLKLKQNS-YSGRKLTCGSDGFPNLKVLHLK 673 (798)
Q Consensus 598 n~i~~~L~~L~l~~~-~~l~~L~~L~L~~~~l-~~~~~~~l~-~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~L~ 673 (798)
|..++.-.+|.. ..+..|+.|+.++|.. +......++ +.++|+.|.+.+|. +++..+.....+.+.|+.+++.
T Consensus 278 ---c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 278 ---CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred ---hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 333444333322 2278899999999853 223344454 67999999999875 5554444445678999999999
Q ss_pred cCCCCC--cceecCCcccccceeeEeeCCCCCCC-----CccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeE
Q 048418 674 SMLWLE--EWTMGTGAMPKLEFLIINPCAYLKKM-----PEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAH 746 (798)
Q Consensus 674 ~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~ 746 (798)
+|.... ++....-++|.|++|.++.|...... ..+-..+..|..+++++||..... ....+.++++|+.
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~----~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA----TLEHLSICRNLER 430 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH----HHHHHhhCcccce
Confidence 985544 23334458999999999999876543 333456778999999999843222 2233447889999
Q ss_pred eeccccccc
Q 048418 747 FMEYESQIT 755 (798)
Q Consensus 747 l~l~~n~l~ 755 (798)
+++..++-.
T Consensus 431 i~l~~~q~v 439 (483)
T KOG4341|consen 431 IELIDCQDV 439 (483)
T ss_pred eeeechhhh
Confidence 888877543
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.54 E-value=5.2e-09 Score=112.59 Aligned_cols=167 Identities=22% Similarity=0.230 Sum_probs=127.0
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
+..|.++.+..+..+ .++..+.++..|.+|+|+.|.+..+|..++.| -|+.|-+++|+++.+|+.+ +.+..|.
T Consensus 97 f~~Le~liLy~n~~r-----~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~i-g~~~tl~ 169 (722)
T KOG0532|consen 97 FVSLESLILYHNCIR-----TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEI-GLLPTLA 169 (722)
T ss_pred HHHHHHHHHHhccce-----ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCccc-ccchhHH
Confidence 455566666555543 24456688899999999999999999998876 5899999999999999999 9899999
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCC-CCCCCCCcceeecC--CCCcchhhhcCCCCCCCeEEEeccc
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISAL--HPCCCTEDILGRLPNLRNLRIWGDL 573 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~ 573 (798)
.||.+.|.+..+|..++.+.+|+.|++..|++.. +| .+..|+ |..|+++ +....|.. +.+|+.|+.|-+.+|
T Consensus 170 ~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~~Lp-Li~lDfScNkis~iPv~-fr~m~~Lq~l~LenN- 244 (722)
T KOG0532|consen 170 HLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELCSLP-LIRLDFSCNKISYLPVD-FRKMRHLQVLQLENN- 244 (722)
T ss_pred HhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHhCCc-eeeeecccCceeecchh-hhhhhhheeeeeccC-
Confidence 9999999999999999999999999999988853 77 666443 4445554 34456667 999999999999998
Q ss_pred chhhhhHHHhccCCCC---CCEEEEec
Q 048418 574 SYYQFLLSQSLCRLSC---LESLKLVN 597 (798)
Q Consensus 574 ~~~~~~l~~~l~~l~~---L~~L~l~~ 597 (798)
....-|+.++..-. .++|++..
T Consensus 245 --PLqSPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 245 --PLQSPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred --CCCCChHHHHhccceeeeeeecchh
Confidence 44455555543322 34454443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.1e-07 Score=74.64 Aligned_cols=58 Identities=33% Similarity=0.503 Sum_probs=27.3
Q ss_pred ccceEEecCCCccccChhhhhCCCCCcEeeccccccccch-hhhcccccCceeccCCcc
Q 048418 470 LLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA-DEFWKMNKLKHLNFGSIT 527 (798)
Q Consensus 470 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 527 (798)
+|++|++++|.++.+|+..|.++++|++|++++|.+..+| ..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444444444444444444555555444444442 234445555555444443
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=3.2e-08 Score=98.45 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=54.9
Q ss_pred CCCeeEEEEEeccCCCC-CccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCccee------cCCc
Q 048418 615 PPRLTHLSFSNTELMED-PMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTM------GTGA 687 (798)
Q Consensus 615 l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~------~~~~ 687 (798)
+||+..+.+..|++... .-.....+|.+..|+|+.+++....-...+.+||.|..|.+.++|.+..+.. -++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 67888888887766432 2334556777778888877776644455567888888888888887775532 2345
Q ss_pred ccccceee
Q 048418 688 MPKLEFLI 695 (798)
Q Consensus 688 l~~L~~L~ 695 (798)
+++++.|+
T Consensus 278 L~~v~vLN 285 (418)
T KOG2982|consen 278 LTKVQVLN 285 (418)
T ss_pred ccceEEec
Confidence 66666664
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=2.2e-07 Score=72.93 Aligned_cols=60 Identities=38% Similarity=0.510 Sum_probs=54.2
Q ss_pred CceeEEEecCcccccCcc-cccCcCccceEEecCCCccccChhhhhCCCCCcEeecccccc
Q 048418 446 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYI 505 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 505 (798)
++|++|++++|.++.+|. .+..+++|++|++++|.++.+|+..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 579999999999998874 688999999999999999999988889999999999999864
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.4e-06 Score=101.76 Aligned_cols=86 Identities=23% Similarity=0.383 Sum_probs=75.5
Q ss_pred ceeEEEecCcccc-cCcccccCcCccceEEecCCCcc-ccChhhhhCCCCCcEeeccccccc-cchhhhcccccCceecc
Q 048418 447 LLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPPSLLSNLPNLYTLDMPFSYID-HTADEFWKMNKLKHLNF 523 (798)
Q Consensus 447 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L 523 (798)
.++.|+|+++.+. .+|..++++++|++|+|++|.+. .+|..+ +++++|+.|+|++|.+. .+|..++++++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788999999988 88999999999999999999987 888888 99999999999999776 67999999999999999
Q ss_pred CCcccCCCCCC
Q 048418 524 GSITLPAHPGK 534 (798)
Q Consensus 524 ~~~~i~~~~~p 534 (798)
++|.+. +.+|
T Consensus 498 s~N~l~-g~iP 507 (623)
T PLN03150 498 NGNSLS-GRVP 507 (623)
T ss_pred cCCccc-ccCC
Confidence 999886 3455
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=2e-07 Score=104.00 Aligned_cols=240 Identities=23% Similarity=0.244 Sum_probs=125.3
Q ss_pred ccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceecc
Q 048418 444 MFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNF 523 (798)
Q Consensus 444 ~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 523 (798)
.+..+..+++..+.+...-..++.+.+|.+|++.+|.+..+...+ ..+++|++|++++|.|..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccch-hhhhcchheeccccccccccc-hhhccchhhhee
Confidence 455556666666666654455677777888888887777776655 677888888888887777643 666677777777
Q ss_pred CCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHh-ccCCCCCCEEEEecCCCCC
Q 048418 524 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQS-LCRLSCLESLKLVNESKMP 602 (798)
Q Consensus 524 ~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~n~i~~ 602 (798)
++|.+.. +.. +..+++|+.++++++. ...+... +..+..|+.+.+..|.+
T Consensus 148 ~~N~i~~-----------------------~~~-~~~l~~L~~l~l~~n~---i~~ie~~~~~~~~~l~~l~l~~n~i-- 198 (414)
T KOG0531|consen 148 SGNLISD-----------------------ISG-LESLKSLKLLDLSYNR---IVDIENDELSELISLEELDLGGNSI-- 198 (414)
T ss_pred ccCcchh-----------------------ccC-CccchhhhcccCCcch---hhhhhhhhhhhccchHHHhccCCch--
Confidence 7777652 222 4445666666666662 2222211 34555566666655442
Q ss_pred CCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcc--cceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCc
Q 048418 603 AFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPL--LQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEE 680 (798)
Q Consensus 603 ~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~--L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 680 (798)
+.+. ++.. +..+..+++..+.+.. ...+..++. |+.+++.+|.+... +..+..++.+..|++.++. +..
T Consensus 199 --~~i~-~~~~-~~~l~~~~l~~n~i~~--~~~l~~~~~~~L~~l~l~~n~i~~~--~~~~~~~~~l~~l~~~~n~-~~~ 269 (414)
T KOG0531|consen 199 --REIE-GLDL-LKKLVLLSLLDNKISK--LEGLNELVMLHLRELYLSGNRISRS--PEGLENLKNLPVLDLSSNR-ISN 269 (414)
T ss_pred --hccc-chHH-HHHHHHhhccccccee--ccCcccchhHHHHHHhcccCccccc--cccccccccccccchhhcc-ccc
Confidence 0000 0111 2333333555554321 122222333 66666766655441 1334456666666666542 222
Q ss_pred ceecCCcccccceeeEeeCCCCC---CCCc-cCCCCCCCCEEEEecCc
Q 048418 681 WTMGTGAMPKLEFLIINPCAYLK---KMPE-QLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 681 l~~~~~~l~~L~~L~l~~c~~l~---~lp~-~l~~l~~L~~L~l~~c~ 724 (798)
.. .....+.+..+....++... .... .....++++.+.+.+++
T Consensus 270 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (414)
T KOG0531|consen 270 LE-GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNP 316 (414)
T ss_pred cc-cccccchHHHhccCcchhcchhhhhccccccccccccccccccCc
Confidence 21 12233344444444443221 1111 13344555666665555
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.05 E-value=2.9e-07 Score=90.69 Aligned_cols=248 Identities=19% Similarity=0.144 Sum_probs=151.6
Q ss_pred hccCceeEEEecCcccc-----cCcccccCcCccceEEecCCCcc----ccChhh------hhCCCCCcEeeccccccc-
Q 048418 443 EMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK----SLPPSL------LSNLPNLYTLDMPFSYID- 506 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~----~lp~~i------~~~L~~L~~L~L~~~~l~- 506 (798)
..+..+..++||||.|. .+...|.+-.+|+..+++.-... ++|+.+ +-+|++||+.+||+|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44778888999999875 45566677778888888763222 344322 258899999999999432
Q ss_pred cch----hhhcccccCceeccCCcccCCCCCCCCC-CCCCcceeecCCCCcchhhhcCCCCCCCeEEEeccc--chhhhh
Q 048418 507 HTA----DEFWKMNKLKHLNFGSITLPAHPGKYCG-SLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL--SYYQFL 579 (798)
Q Consensus 507 ~lp----~~i~~L~~L~~L~L~~~~i~~~~~p~i~-~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~ 579 (798)
..| +.|.+-+.|.||.+++|.+....-..|+ .|..|.. ... ..+-|.|+...+..|. +.....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~---------nKK-aa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY---------NKK-AADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH---------Hhh-hccCCCceEEEeccchhccCcHHH
Confidence 223 4567788999999998877421000222 1111111 112 4455677777766654 112222
Q ss_pred HHHhccCCCCCCEEEEecCCC-CCCCceeee-ecCCCCCCeeEEEEEeccCCCCCcc----ccccCcccceEEEeecccc
Q 048418 580 LSQSLCRLSCLESLKLVNESK-MPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMP----ALEKMPLLQVLKLKQNSYS 653 (798)
Q Consensus 580 l~~~l~~l~~L~~L~l~~n~i-~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~~~~~~ 653 (798)
....+..-.+|+.+.+..|+| |..++.|-. .+.. +.+|+.|+|.+|.++..... .+...+.|+.|.+..|-++
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 333444456888999988887 545554432 2233 78899999999877654332 3456677888888877666
Q ss_pred CCeeee-----CCCCCccccEEEeecCCCCCcc-e------ecCCcccccceeeEeeCCC
Q 048418 654 GRKLTC-----GSDGFPNLKVLHLKSMLWLEEW-T------MGTGAMPKLEFLIINPCAY 701 (798)
Q Consensus 654 ~~~~~~-----~~~~~~~L~~L~L~~~~~l~~l-~------~~~~~l~~L~~L~l~~c~~ 701 (798)
...... .-..+|+|..|.+.+|..-... . +..+++|-|..|.+.+|..
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 543211 1124678888888776432221 1 2245777888887777764
No 48
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.03 E-value=1.9e-05 Score=73.95 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=60.9
Q ss_pred eecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccc-ccc---cccc-----------------c---e
Q 048418 162 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYV-KHY---FDCH-----------------A---W 217 (798)
Q Consensus 162 vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~---F~~~-----------------~---w 217 (798)
+|++...+.+...+.... .+.+.|+|.+|+||||+|+.+++.... ... +++. . +
T Consensus 1 ~~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 1 VGQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred CchHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 377888888988886643 567889999999999999999884210 000 0100 0 0
Q ss_pred ------EEEEEEECCCCh-----hhHHHHhhhcCCC---CCCcEEEEEeeecc
Q 048418 218 ------RYLIVFDNVWRI-----SAWDVIRKILPDN---QNGSRVLITLAQIE 256 (798)
Q Consensus 218 ------r~LivlDdvw~~-----~~~~~l~~~~~~~---~~gs~ilvTtR~~~ 256 (798)
.-++|+||++.. ..+..+...+... ..+.+||+||....
T Consensus 79 ~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 578999999863 2233333333221 35788999888664
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.01 E-value=5.3e-06 Score=97.00 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=88.8
Q ss_pred CeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeE
Q 048418 617 RLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLII 696 (798)
Q Consensus 617 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l 696 (798)
.++.|+|++|.+.+..+..++.+++|+.|+|++|.+.+. ++..++.+++|+.|+|++|.....+|..++.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 478888999988888888899999999999998888764 4666788999999999998666688888899999999999
Q ss_pred eeCCCCCCCCccCCCC-CCCCEEEEecCc
Q 048418 697 NPCAYLKKMPEQLWCI-KSLNKFDCWWPQ 724 (798)
Q Consensus 697 ~~c~~l~~lp~~l~~l-~~L~~L~l~~c~ 724 (798)
++|.....+|..+... .++..+++.+|+
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 9998888888877653 466788888875
No 50
>PF05729 NACHT: NACHT domain
Probab=98.01 E-value=7.3e-06 Score=78.82 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=51.3
Q ss_pred EEEEEecCCCChHHHHHHHHhcccccccc----ccccce-----------------------------------------
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSSNYVKHY----FDCHAW----------------------------------------- 217 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w----------------------------------------- 217 (798)
+++-|+|.+|+||||+++.+..+..-... +...+|
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 57899999999999999999875322222 233333
Q ss_pred -EEEEEEECCCChhh---------HHHHhh-hcCC-CCCCcEEEEEeeeccc
Q 048418 218 -RYLIVFDNVWRISA---------WDVIRK-ILPD-NQNGSRVLITLAQIEI 257 (798)
Q Consensus 218 -r~LivlDdvw~~~~---------~~~l~~-~~~~-~~~gs~ilvTtR~~~v 257 (798)
++++|+|++.+... +..+.. -++. ..++++|+||+|....
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 99999999876421 233332 2232 3568999999998754
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.95 E-value=1.2e-06 Score=97.77 Aligned_cols=223 Identities=23% Similarity=0.203 Sum_probs=135.9
Q ss_pred hhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCcee
Q 048418 442 CEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHL 521 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 521 (798)
+..++.|..|++.+|.|..+...+..+++|++|++++|.|+.+.. + ..+..|+.|++++|.+..++. +..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l-~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-L-STLTLLKELNLSGNLISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-h-hhccchhhheeccCcchhccC-Cccchhhhcc
Confidence 567888999999999988776658889999999999999988865 3 688889999999998887754 5668899999
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCC
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKM 601 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~ 601 (798)
++++|.+.. ++.. . +..+.+++.+.+.++...... .+..+..+..+++..|.+
T Consensus 168 ~l~~n~i~~--ie~~-------------------~-~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n~i- 220 (414)
T KOG0531|consen 168 DLSYNRIVD--IEND-------------------E-LSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDNKI- 220 (414)
T ss_pred cCCcchhhh--hhhh-------------------h-hhhccchHHHhccCCchhccc----chHHHHHHHHhhcccccc-
Confidence 999888753 2210 0 133444555555554211000 011111222223333331
Q ss_pred CCCceeeeecCCCCCC--eeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCC
Q 048418 602 PAFSKIVLVEYQFPPR--LTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLE 679 (798)
Q Consensus 602 ~~L~~L~l~~~~~l~~--L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 679 (798)
..+..+ .. +.. |+.++++++.+.. .+..+..++++..|++..|.+... ......+.+..+....+....
T Consensus 221 ~~~~~l----~~-~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 221 SKLEGL----NE-LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred eeccCc----cc-chhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc---ccccccchHHHhccCcchhcc
Confidence 111111 11 222 7777888777542 225666777888888876666542 223455666666666654332
Q ss_pred cc---ee-cCCcccccceeeEeeCCCCC
Q 048418 680 EW---TM-GTGAMPKLEFLIINPCAYLK 703 (798)
Q Consensus 680 ~l---~~-~~~~l~~L~~L~l~~c~~l~ 703 (798)
.+ .. .....+.++.+.+..++.-.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 292 SEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhhhhccccccccccccccccccCcccc
Confidence 21 11 14567778888887777544
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=2e-06 Score=85.91 Aligned_cols=225 Identities=17% Similarity=0.243 Sum_probs=128.2
Q ss_pred ceeEEEecCcccccC--cccc-cCcCccceEEecCCCccccC--hhhhhCCCCCcEeeccccccccchhhh-cccccCce
Q 048418 447 LLRVLDLGSLVLIQY--PSGI-ENLFLLRYLKLNIPSLKSLP--PSLLSNLPNLYTLDMPFSYIDHTADEF-WKMNKLKH 520 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~l--p~~i-~~L~~Lr~L~L~~~~i~~lp--~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~ 520 (798)
.+..|.+.++.|... ...| ..+.+++.|+|.+|.|+... ..|+.+|+.|++|+|+.|.+...-..+ -.+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 344666666665411 1222 23557777777777776322 123366777777777777443221111 23456666
Q ss_pred eccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCC
Q 048418 521 LNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK 600 (798)
Q Consensus 521 L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i 600 (798)
|-|.++.+.. ......+..+|.++.|+++.| +++.+++..|.+
T Consensus 126 lVLNgT~L~w---------------------~~~~s~l~~lP~vtelHmS~N----------------~~rq~n~Dd~c~ 168 (418)
T KOG2982|consen 126 LVLNGTGLSW---------------------TQSTSSLDDLPKVTELHMSDN----------------SLRQLNLDDNCI 168 (418)
T ss_pred EEEcCCCCCh---------------------hhhhhhhhcchhhhhhhhccc----------------hhhhhccccccc
Confidence 6555555431 111111556666777766665 333344433221
Q ss_pred ---CCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCC
Q 048418 601 ---MPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLW 677 (798)
Q Consensus 601 ---~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 677 (798)
.+.+..++ . .+++..+..+-|++ -.-+|++..+.+..|.+....-......||.+-.|+|+.+ +
T Consensus 169 e~~s~~v~tlh----~-~~c~~~~w~~~~~l-------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~ 235 (418)
T KOG2982|consen 169 EDWSTEVLTLH----Q-LPCLEQLWLNKNKL-------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-N 235 (418)
T ss_pred cccchhhhhhh----c-CCcHHHHHHHHHhH-------HhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-c
Confidence 11111111 1 23333333333332 2357899999999887766554556677899999999886 6
Q ss_pred CCcce--ecCCcccccceeeEeeCCCCCCCCc------cCCCCCCCCEEEEe
Q 048418 678 LEEWT--MGTGAMPKLEFLIINPCAYLKKMPE------QLWCIKSLNKFDCW 721 (798)
Q Consensus 678 l~~l~--~~~~~l~~L~~L~l~~c~~l~~lp~------~l~~l~~L~~L~l~ 721 (798)
+.+|. ..+..||.|..|.++++|....+-. -++.+++++.|+=+
T Consensus 236 idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 236 IDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 77773 4567899999999999998764432 24567777777643
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=5.8e-07 Score=99.55 Aligned_cols=57 Identities=25% Similarity=0.197 Sum_probs=25.3
Q ss_pred eeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCC
Q 048418 618 LTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSML 676 (798)
Q Consensus 618 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 676 (798)
|..|.|++|.++ .+..+.+|.+|+.|++++|.+.+..-...+..+..|+.|.|.+|+
T Consensus 234 L~~L~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 234 LQLLNLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred heeeeecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 445555555432 233444455555555555544432222223334445555555544
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=9.1e-06 Score=94.81 Aligned_cols=109 Identities=21% Similarity=0.176 Sum_probs=77.1
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc--cCcccccCcCccceEEecCCCccccChhhhhCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPN 494 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 494 (798)
..+||.|.+.|... .+..++......+|.|+.|.+++-.+. .+..-..++++|+.||+|+++++.+ ..+ ++|+|
T Consensus 121 r~nL~~LdI~G~~~--~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSEL--FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKN 196 (699)
T ss_pred HHhhhhcCccccch--hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hcccc
Confidence 45678888776443 345677777778888888888887654 4444456678888888888888877 566 88888
Q ss_pred CcEeeccccccccc--hhhhcccccCceeccCCcccC
Q 048418 495 LYTLDMPFSYIDHT--ADEFWKMNKLKHLNFGSITLP 529 (798)
Q Consensus 495 L~~L~L~~~~l~~l--p~~i~~L~~L~~L~L~~~~i~ 529 (798)
||+|.+++-.+..- -..+.+|++|++||+|.....
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 88888876655432 245667888888888775543
No 55
>PF13173 AAA_14: AAA domain
Probab=97.84 E-value=2e-05 Score=72.36 Aligned_cols=76 Identities=17% Similarity=0.322 Sum_probs=56.1
Q ss_pred EEEEEecCCCChHHHHHHHHhcccc----c-ccccc---------c---cce-------EEEEEEECCCChhhHHHHhhh
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSSNY----V-KHYFD---------C---HAW-------RYLIVFDNVWRISAWDVIRKI 238 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~~~----~-~~~F~---------~---~~w-------r~LivlDdvw~~~~~~~l~~~ 238 (798)
+++.|.|+.|+|||||+++++.+.. + --.|+ . ..+ +.+|++|+|-...+|......
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~ 82 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDALKF 82 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHHHH
Confidence 6889999999999999999886421 0 00011 0 000 478999999988888888877
Q ss_pred cCCCCCCcEEEEEeeecccc
Q 048418 239 LPDNQNGSRVLITLAQIEIV 258 (798)
Q Consensus 239 ~~~~~~gs~ilvTtR~~~v~ 258 (798)
+-+..+..+|++|+.+....
T Consensus 83 l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 83 LVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred HHHhccCceEEEEccchHHH
Confidence 77766778999999877654
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=1.1e-05 Score=94.08 Aligned_cols=106 Identities=25% Similarity=0.290 Sum_probs=62.3
Q ss_pred cCceeEEEecCcc-cc-cCccccc-CcCccceEEecCCCcc--ccChhhhhCCCCCcEeeccccccccchhhhcccccCc
Q 048418 445 FKLLRVLDLGSLV-LI-QYPSGIE-NLFLLRYLKLNIPSLK--SLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLK 519 (798)
Q Consensus 445 ~~~Lr~L~L~~~~-i~-~lp~~i~-~L~~Lr~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 519 (798)
-.+|+.|+++|.. +. .-|..++ .||+|+.|.+++-.+. .+ ..++.+++||..||+++++++.+ .+++.|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhH-HHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 3467777777755 22 3333333 3677777777775443 22 22235677777777777777777 5677777777
Q ss_pred eeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEeccc
Q 048418 520 HLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 573 (798)
Q Consensus 520 ~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 573 (798)
.|.+.+=.+.. ...+.+ +-+|++|+.|++|...
T Consensus 199 ~L~mrnLe~e~--------------------~~~l~~-LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFES--------------------YQDLID-LFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCCc--------------------hhhHHH-HhcccCCCeeeccccc
Confidence 77554433321 233444 5666666666666653
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.9e-05 Score=56.88 Aligned_cols=38 Identities=42% Similarity=0.571 Sum_probs=18.9
Q ss_pred ccceEEecCCCccccChhhhhCCCCCcEeeccccccccc
Q 048418 470 LLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHT 508 (798)
Q Consensus 470 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l 508 (798)
+|++|++++|.|+.+|+.+ ++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCC
Confidence 4555555555555555544 5555555555555554444
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.7e-05 Score=57.25 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=35.9
Q ss_pred CceeEEEecCcccccCcccccCcCccceEEecCCCccccCh
Q 048418 446 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPP 486 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~ 486 (798)
++|++|++++|.|+.+|..+++|++|++|++++|.++.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999999999889999999999999999997764
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=6.7e-05 Score=80.84 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=55.9
Q ss_pred hhccCceeEEEecCcccccCcccccCcCccceEEecCC-CccccChhhhhCCCCCcEeecccc-ccccchhhhcccccCc
Q 048418 442 CEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIP-SLKSLPPSLLSNLPNLYTLDMPFS-YIDHTADEFWKMNKLK 519 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~-~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~ 519 (798)
+..+++++.|++++|.++.+|. + ..+|+.|.+++| .++.+|..+ ..+|+.|++++| .+..+|.. |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cc
Confidence 4557889999999998888882 2 237999999885 467888765 368999999999 88888764 56
Q ss_pred eeccCCcc
Q 048418 520 HLNFGSIT 527 (798)
Q Consensus 520 ~L~L~~~~ 527 (798)
+|++..+.
T Consensus 116 ~L~L~~n~ 123 (426)
T PRK15386 116 SLEIKGSA 123 (426)
T ss_pred eEEeCCCC
Confidence 66665544
No 60
>PRK06893 DNA replication initiation factor; Validated
Probab=97.71 E-value=5.3e-05 Score=77.10 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=45.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhccccccccccccce-------------------EEEEEEECCCCh---hhHHH-Hhhh
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW-------------------RYLIVFDNVWRI---SAWDV-IRKI 238 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-------------------r~LivlDdvw~~---~~~~~-l~~~ 238 (798)
.+.+.++|..|+|||+||+++++.. ........| .-+|+|||+|.. .+|+. +...
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l 116 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDL 116 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHH
Confidence 4568899999999999999999842 111111111 238999999974 56663 3333
Q ss_pred cCCC-CCCcEEEEEeeec
Q 048418 239 LPDN-QNGSRVLITLAQI 255 (798)
Q Consensus 239 ~~~~-~~gs~ilvTtR~~ 255 (798)
+... ..|+.|||||.+.
T Consensus 117 ~n~~~~~~~~illits~~ 134 (229)
T PRK06893 117 FNRIKEQGKTLLLISADC 134 (229)
T ss_pred HHHHHHcCCcEEEEeCCC
Confidence 3322 2466776666654
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.00023 Score=76.77 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=43.7
Q ss_pred ccCcCccceEEecCCCccccChhhhhCCCCCcEeecccc-ccccchhhhcccccCceeccCCc
Q 048418 465 IENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFS-YIDHTADEFWKMNKLKHLNFGSI 526 (798)
Q Consensus 465 i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~ 526 (798)
+..+.++++|++++|.++.+|. + ..+|+.|.+++| ++..+|..+. ++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 4457889999999999988883 3 356999999988 7788887553 57888888776
No 62
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.60 E-value=0.00015 Score=80.59 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=40.4
Q ss_pred CCCceeecHhHHHHHHHHHhcC--CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+..++||+++.+++...|... ......+-|+|.+|+||||+++.++++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999998542 233455779999999999999999874
No 63
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.53 E-value=0.00015 Score=80.75 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=56.1
Q ss_pred CceeecHhHHHH---HHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccc-------------------
Q 048418 159 RDMVGLDDRMEE---LLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHA------------------- 216 (798)
Q Consensus 159 ~~~vG~~~~~~~---i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~------------------- 216 (798)
+++||.+..+.. +.+++..+. ...+-++|++|+||||||+.+.+. ....|...-
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~--~~~~~~~l~a~~~~~~~ir~ii~~~~~~ 87 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGA--TDAPFEALSAVTSGVKDLREVIEEARQR 87 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHH--hCCCEEEEecccccHHHHHHHHHHHHHh
Confidence 467888777555 666665543 556788999999999999999873 222221000
Q ss_pred ----eEEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEE
Q 048418 217 ----WRYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLIT 251 (798)
Q Consensus 217 ----wr~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvT 251 (798)
-+.+|++|++|.- .+.+.+...+. .|..+++.
T Consensus 88 ~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~ 125 (413)
T PRK13342 88 RSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIG 125 (413)
T ss_pred hhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEE
Confidence 0578999999864 45566655444 25555553
No 64
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.46 E-value=0.00019 Score=78.68 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=40.2
Q ss_pred CCCCCceeecHhHHHHHHHHHhcC--C---------CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 155 SSKNRDMVGLDDRMEELLDLLIEG--P---------PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 155 ~~~~~~~vG~~~~~~~i~~~L~~~--~---------~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.....++.|+++.+++|.+.+... . ...+-+.++|++|+|||++|+++++.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 344568999999999999887432 0 23556889999999999999999883
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.46 E-value=6.2e-06 Score=91.65 Aligned_cols=108 Identities=17% Similarity=0.168 Sum_probs=73.8
Q ss_pred hHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhccccc
Q 048418 438 WEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNK 517 (798)
Q Consensus 438 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~ 517 (798)
+...+.-++.|+.|+|+.|.+...- .+..|++|+.|+|++|.+..+|.---..+ +|+.|.+++|.++++- ++.+|.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~Lks 255 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLR-GIENLKS 255 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhh-hHHhhhh
Confidence 3455666778888888888887554 67788888888888888887775220233 3888888888777774 4778888
Q ss_pred CceeccCCcccCCCC-CCCCCCCCCcceeecC
Q 048418 518 LKHLNFGSITLPAHP-GKYCGSLENLNFISAL 548 (798)
Q Consensus 518 L~~L~L~~~~i~~~~-~p~i~~L~~L~~l~~~ 548 (798)
|++||+++|.+.... +..+..|..|..+++.
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence 888888888776422 1133344444444444
No 66
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.45 E-value=9.2e-05 Score=78.95 Aligned_cols=34 Identities=15% Similarity=-0.017 Sum_probs=29.4
Q ss_pred EEEEEecCCCChHHHHHHHHhccccccccccccce
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW 217 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 217 (798)
...+|+|.+|+||||||+.||++.... +|++++|
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~ 203 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLI 203 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEE
Confidence 467899999999999999999964444 8999988
No 67
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.00056 Score=73.26 Aligned_cols=97 Identities=14% Similarity=0.288 Sum_probs=71.9
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc----ccccccccccce-----------------
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS----NYVKHYFDCHAW----------------- 217 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~----~~~~~~F~~~~w----------------- 217 (798)
.+++|-+..++++.+++..+. -....-++|+.|+||||+|+.++.. .....|+|...|
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHH
Confidence 568898888999999986653 3457788999999999999988772 112234454333
Q ss_pred ------------EEEEEEE-CCCChhhHHHHhhhcCCCCCCcEEEEEeeecc
Q 048418 218 ------------RYLIVFD-NVWRISAWDVIRKILPDNQNGSRVLITLAQIE 256 (798)
Q Consensus 218 ------------r~LivlD-dvw~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 256 (798)
|++||=| |.++...|+.+...+..-.+++.+|++|.+.+
T Consensus 83 ~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 83 EEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 5555544 55677889999999988778999999987654
No 68
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=2.1e-05 Score=70.00 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=30.6
Q ss_pred CcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCccc
Q 048418 467 NLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITL 528 (798)
Q Consensus 467 ~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i 528 (798)
...+|...+|++|.+.++|+.+-.+.+.+.+|++++|.+..+|.++..++.|+.|+++.|.+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence 33444444555555555555443333445555555555555555555555555555555444
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.40 E-value=2.9e-05 Score=88.78 Aligned_cols=241 Identities=22% Similarity=0.157 Sum_probs=117.9
Q ss_pred hHHHhhccCceeEEEecCcc-ccc--CcccccCcCccceEEecCC-C-ccc----cChhhhhCCCCCcEeeccccc-ccc
Q 048418 438 WEKICEMFKLLRVLDLGSLV-LIQ--YPSGIENLFLLRYLKLNIP-S-LKS----LPPSLLSNLPNLYTLDMPFSY-IDH 507 (798)
Q Consensus 438 ~~~~~~~~~~Lr~L~L~~~~-i~~--lp~~i~~L~~Lr~L~L~~~-~-i~~----lp~~i~~~L~~L~~L~L~~~~-l~~ 507 (798)
.......++.|+.|.+.++. +.. +-.....+++|+.|+++++ . +.. .+... ..+.+|+.|++++|. ++.
T Consensus 180 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 180 LLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL-SICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred HHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh-hhcCCcCccchhhhhccCc
Confidence 33444456666666666664 332 2334455666666666652 1 111 11122 445666666666663 333
Q ss_pred c-hhhhc-ccccCceeccCCcc-cCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhc
Q 048418 508 T-ADEFW-KMNKLKHLNFGSIT-LPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSL 584 (798)
Q Consensus 508 l-p~~i~-~L~~L~~L~L~~~~-i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l 584 (798)
. -..+. .+++|++|.+.+|. ++ ...+..+...+++|++|++++|.......+....
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt---------------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLT---------------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccc---------------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence 2 11122 25566666544443 22 2333333566788888888887543344444445
Q ss_pred cCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCC---CCccccccCcccceEEEeeccccCCeeeeCC
Q 048418 585 CRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELME---DPMPALEKMPLLQVLKLKQNSYSGRKLTCGS 661 (798)
Q Consensus 585 ~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 661 (798)
..+++|+.|.+.. ... ++.++.+.+..+.... ........+++++.+.+..+...........
T Consensus 318 ~~c~~l~~l~~~~-------------~~~-c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l 383 (482)
T KOG1947|consen 318 KNCPNLRELKLLS-------------LNG-CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSL 383 (482)
T ss_pred HhCcchhhhhhhh-------------cCC-CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHh
Confidence 5566666655443 111 3455555555543211 1122345677777777776553322211222
Q ss_pred CCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCC-ccCCC-CCCCCEEEEecCc
Q 048418 662 DGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMP-EQLWC-IKSLNKFDCWWPQ 724 (798)
Q Consensus 662 ~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~-l~~L~~L~l~~c~ 724 (798)
.++|.|. ..+......+..|+.|.++.|.....-- ..... +.++..+++.+|+
T Consensus 384 ~gc~~l~----------~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 384 RGCPNLT----------ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cCCcccc----------hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 3333331 2222222233337777777777554210 01111 5566677777765
No 70
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.36 E-value=0.00019 Score=73.37 Aligned_cols=35 Identities=9% Similarity=-0.165 Sum_probs=30.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhccccccccccccce
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW 217 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 217 (798)
-..++|+|.+|+|||||++.+|++.... +|+..+|
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~ 50 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLI 50 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEE
Confidence 4578999999999999999999965444 8999888
No 71
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.31 E-value=0.00034 Score=71.16 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=54.3
Q ss_pred cHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccce-------------------EEEEEEE
Q 048418 164 LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW-------------------RYLIVFD 224 (798)
Q Consensus 164 ~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-------------------r~LivlD 224 (798)
.+...+++.+++... ....|-|+|..|+||||||+.+++... ......++ .-+||+|
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvID 97 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQADPEVLEGLEQADLVCLD 97 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEEe
Confidence 455667777765432 356788999999999999999987421 11111111 2379999
Q ss_pred CCCChh---hH-HHHhhhcCC-CCCCcEEEEEeeec
Q 048418 225 NVWRIS---AW-DVIRKILPD-NQNGSRVLITLAQI 255 (798)
Q Consensus 225 dvw~~~---~~-~~l~~~~~~-~~~gs~ilvTtR~~ 255 (798)
|+.... .| +.+...+.. ...+.+||+||+..
T Consensus 98 di~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 98 DVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred ChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 997642 33 344443332 12345888888753
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.31 E-value=0.00014 Score=72.21 Aligned_cols=240 Identities=16% Similarity=0.096 Sum_probs=142.9
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc----cCc-------ccccCcCccceEEecCCCcc-cc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI----QYP-------SGIENLFLLRYLKLNIPSLK-SL 484 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~----~lp-------~~i~~L~~Lr~L~L~~~~i~-~l 484 (798)
...+..+.++++.....-...+...+.+-++|++.+++.-... .+| +.+-+|++|+..+||.|-+. +.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4456677777776654333456677788888999888875321 333 34567899999999998876 45
Q ss_pred Chhh---hhCCCCCcEeeccccccccchh--------------hhcccccCceeccCCcccCCCCCCCCCCCCCcceeec
Q 048418 485 PPSL---LSNLPNLYTLDMPFSYIDHTAD--------------EFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISA 547 (798)
Q Consensus 485 p~~i---~~~L~~L~~L~L~~~~l~~lp~--------------~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~ 547 (798)
|+.+ +++-++|.+|.+++|.+..+.. -..+-|.|+....+.|++.++...
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~------------- 175 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE------------- 175 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH-------------
Confidence 5432 2677889999999997765421 123456677777777766532111
Q ss_pred CCCCcchhhhcCCCCCCCeEEEecccchh---hhhHHHhccCCCCCCEEEEecCCCCCCCce--eeeecCCCCCCeeEEE
Q 048418 548 LHPCCCTEDILGRLPNLRNLRIWGDLSYY---QFLLSQSLCRLSCLESLKLVNESKMPAFSK--IVLVEYQFPPRLTHLS 622 (798)
Q Consensus 548 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~--L~l~~~~~l~~L~~L~ 622 (798)
.....+..-.+|+.+.+..|.... ..-+...+..+.+|+.|+|..|-+ ...-+ |...+.. .+.|++|.
T Consensus 176 -----~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf-t~~gS~~La~al~~-W~~lrEL~ 248 (388)
T COG5238 176 -----LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF-TLEGSRYLADALCE-WNLLRELR 248 (388)
T ss_pred -----HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch-hhhhHHHHHHHhcc-cchhhhcc
Confidence 111113333466666666654111 111223344566777777776542 00000 1112223 56788888
Q ss_pred EEeccCCCCCccc----cc--cCcccceEEEeeccccCCeeee------CCCCCccccEEEeecCC
Q 048418 623 FSNTELMEDPMPA----LE--KMPLLQVLKLKQNSYSGRKLTC------GSDGFPNLKVLHLKSML 676 (798)
Q Consensus 623 L~~~~l~~~~~~~----l~--~l~~L~~L~L~~~~~~~~~~~~------~~~~~~~L~~L~L~~~~ 676 (798)
+.+|-++...... +. ..|+|..|...+|...+..+.. ..+.+|-|..|.+.+|.
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 8888766543332 22 3688888888888765543322 23568888888888874
No 73
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.30 E-value=0.00031 Score=75.13 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=38.9
Q ss_pred CceeecHhHHHHHHHHHhcC---CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++||++..++++..++... ......+-++|++|+||||||+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999888642 233556789999999999999999984
No 74
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.26 E-value=0.0002 Score=70.22 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=32.0
Q ss_pred ceeecHhHHHHHHHHHh-cCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 160 DMVGLDDRMEELLDLLI-EGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~-~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+|||+++.+++...|. ......+.+-|+|.+|+|||||++.++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999994 23345799999999999999999999884
No 75
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.22 E-value=0.001 Score=69.66 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHHHHHhcC-CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 169 EELLDLLIEG-PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 169 ~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
++++..+... .....++.|+|.+|+|||||++.+++.
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 4455554322 123568899999999999999999985
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.21 E-value=0.00083 Score=79.00 Aligned_cols=89 Identities=21% Similarity=0.300 Sum_probs=56.9
Q ss_pred CCceeecHhHHH---HHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccc-cc-----------------
Q 048418 158 NRDMVGLDDRME---ELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDC-HA----------------- 216 (798)
Q Consensus 158 ~~~~vG~~~~~~---~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~----------------- 216 (798)
-++++|.+.... .+.+++..+ .+..+-++|++|+||||||+.+++. ....|.. .+
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~lna~~~~i~dir~~i~~a~~ 102 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH--TRAHFSSLNAVLAGVKDLRAEVDRAKE 102 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH--hcCcceeehhhhhhhHHHHHHHHHHHH
Confidence 356889887764 344555443 3556789999999999999999873 3333210 00
Q ss_pred ----e--EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEee
Q 048418 217 ----W--RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITLA 253 (798)
Q Consensus 217 ----w--r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTtR 253 (798)
+ +.+++||||+. ..+++.+...+. .|+.++++++
T Consensus 103 ~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aT 144 (725)
T PRK13341 103 RLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGAT 144 (725)
T ss_pred HhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEec
Confidence 0 45899999964 456666654333 3666666433
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.18 E-value=9.8e-05 Score=65.88 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=54.3
Q ss_pred hccCceeEEEecCcccccCcccccC-cCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCcee
Q 048418 443 EMFKLLRVLDLGSLVLIQYPSGIEN-LFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHL 521 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~~lp~~i~~-L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 521 (798)
..-..|...+|++|.+..+|+.+.. .+-++.|+|++|.++.+|..+ ..++.|+.|+++.|.+...|..+..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 3344566666666666666665543 336666677776677777665 66677777777777666666666666666666
Q ss_pred ccCCccc
Q 048418 522 NFGSITL 528 (798)
Q Consensus 522 ~L~~~~i 528 (798)
+..+|..
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 6655544
No 78
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.18 E-value=0.00051 Score=74.09 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=40.3
Q ss_pred CCCceeecHhHHHHHHHHHhc---CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIE---GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~---~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+++|++..++.+..++.. .......+-++|++|+||||||+.+.+.
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 346799999999999888753 2334667889999999999999999885
No 79
>PRK04195 replication factor C large subunit; Provisional
Probab=97.18 E-value=0.00075 Score=76.76 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=40.3
Q ss_pred CCceeecHhHHHHHHHHHhcC--CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++++.+|+..- ....+.+-|+|++|+||||+|+.+.++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999998642 223678899999999999999999884
No 80
>PRK08727 hypothetical protein; Validated
Probab=97.16 E-value=0.00072 Score=68.97 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=52.8
Q ss_pred ceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccce-------------------EEE
Q 048418 160 DMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW-------------------RYL 220 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-------------------r~L 220 (798)
.++|-......+.....+. ....+.|+|..|+|||+||+.+++. .........+ --+
T Consensus 21 f~~~~~n~~~~~~~~~~~~--~~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dl 96 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQ--SSDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQAAAGRLRDALEALEGRSL 96 (233)
T ss_pred ccCCcHHHHHHHHHHHhcc--CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCE
Confidence 3444444444444333322 2356999999999999999999874 2211111112 358
Q ss_pred EEEECCCCh---hhHHHHhhhcCC--CCCCcEEEEEeee
Q 048418 221 IVFDNVWRI---SAWDVIRKILPD--NQNGSRVLITLAQ 254 (798)
Q Consensus 221 ivlDdvw~~---~~~~~l~~~~~~--~~~gs~ilvTtR~ 254 (798)
||+||+... ..|+...-.+-+ ..+|..||+|++.
T Consensus 97 LiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 97 VALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred EEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 999998643 344433222221 1346779999885
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.0013 Score=74.43 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=65.3
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccce--------------------
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW-------------------- 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-------------------- 217 (798)
-++++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+...-.+.+...+|
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 3578999998888888887653 2456789999999999999998774221111110111
Q ss_pred -------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEee
Q 048418 218 -------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLA 253 (798)
Q Consensus 218 -------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR 253 (798)
+-++|+|+++.. ..++.+...+....+...+|++|.
T Consensus 92 ~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 92 AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 558899999854 568888777766555556655554
No 82
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.08 E-value=0.0015 Score=71.48 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=37.4
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++++.+...+.++..|... +.|.++|++|+||||+|+.+++.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~ 217 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYL 217 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHH
Confidence 346888999999999999753 46778999999999999999874
No 83
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.08 E-value=0.0056 Score=71.36 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=38.2
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-++++|.+..+..+.+.+.... ...+.|+|.+|+||||+|+.+++.
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~ 198 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEE 198 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999888875433 567999999999999999999764
No 84
>PRK06620 hypothetical protein; Validated
Probab=97.07 E-value=0.0016 Score=65.29 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=53.2
Q ss_pred CCCceeec-Hh-HHHHHHHHHhcCCCCe--EEEEEecCCCChHHHHHHHHhccccc---cccc-cccc--eEEEEEEECC
Q 048418 157 KNRDMVGL-DD-RMEELLDLLIEGPPQL--SVVAILDSIGLDKTAFAAEAYSSNYV---KHYF-DCHA--WRYLIVFDNV 226 (798)
Q Consensus 157 ~~~~~vG~-~~-~~~~i~~~L~~~~~~~--~vi~i~G~gGiGKTtLa~~v~~~~~~---~~~F-~~~~--wr~LivlDdv 226 (798)
-+..+||- .. ....+.++-...+... +.+-|+|..|+|||+|++.+.+.... ...| .... ..-++++|||
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi 94 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDI 94 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEecc
Confidence 35567776 22 2333444332211112 66899999999999999998875321 1111 0000 0337889999
Q ss_pred CChhhHHHHhhhcCC-CCCCcEEEEEeeec
Q 048418 227 WRISAWDVIRKILPD-NQNGSRVLITLAQI 255 (798)
Q Consensus 227 w~~~~~~~l~~~~~~-~~~gs~ilvTtR~~ 255 (798)
....+ ..+...+.. ..+|..||+|++..
T Consensus 95 ~~~~~-~~lf~l~N~~~e~g~~ilits~~~ 123 (214)
T PRK06620 95 ENWQE-PALLHIFNIINEKQKYLLLTSSDK 123 (214)
T ss_pred ccchH-HHHHHHHHHHHhcCCEEEEEcCCC
Confidence 53221 122222211 13467899998855
No 85
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.05 E-value=0.0016 Score=69.96 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=65.0
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccc---c------------ccc-----
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYF---D------------CHA----- 216 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~------------~~~----- 216 (798)
.-++++|.+...+.+..++..+. -..++-++|.+|+||||+|+.+++.. ...| + ..-
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~--~~~~~~i~~~~~~~~~i~~~l~~~~~~~ 95 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEV--GAEVLFVNGSDCRIDFVRNRLTRFASTV 95 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHh--CccceEeccCcccHHHHHHHHHHHHHhh
Confidence 34688999999999999987643 35677779999999999999998731 1111 0 000
Q ss_pred ----eEEEEEEECCCCh---hhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 217 ----WRYLIVFDNVWRI---SAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 217 ----wr~LivlDdvw~~---~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
-+-++|+||+... ...+.+...+.....++++|+||...
T Consensus 96 ~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 96 SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 0457889999644 23344444444445678899988654
No 86
>PRK05642 DNA replication initiation factor; Validated
Probab=96.96 E-value=0.0015 Score=66.57 Aligned_cols=72 Identities=14% Similarity=0.315 Sum_probs=45.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhccccccccccccce---------------EE----EEEEECCCCh---hhHHH-Hhhh
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW---------------RY----LIVFDNVWRI---SAWDV-IRKI 238 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---------------r~----LivlDdvw~~---~~~~~-l~~~ 238 (798)
...+.|+|..|+|||.||+.+.+. ....-..++| ++ ++|+||+-.. ..|+. +...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l 122 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHL 122 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHH
Confidence 367889999999999999999863 2111011111 11 6889999633 45654 4444
Q ss_pred cCC-CCCCcEEEEEeeec
Q 048418 239 LPD-NQNGSRVLITLAQI 255 (798)
Q Consensus 239 ~~~-~~~gs~ilvTtR~~ 255 (798)
+.. ..+|.+||+|++..
T Consensus 123 ~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 123 FNRLRDSGRRLLLAASKS 140 (234)
T ss_pred HHHHHhcCCEEEEeCCCC
Confidence 432 23467888888753
No 87
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.95 E-value=0.00055 Score=69.74 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=35.5
Q ss_pred eeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 161 MVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 161 ~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
++||+.+.++|.+++..+. .+.+.|+|..|+|||+|++.+.+.
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~ 43 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINE 43 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHH
Confidence 5899999999999997753 578889999999999999999884
No 88
>PRK09087 hypothetical protein; Validated
Probab=96.95 E-value=0.0024 Score=64.68 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=42.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhcccccc---c-cccccc----eEEEEEEECCCChh-hHHHHhhhcCC-CCCCcEEEEE
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVK---H-YFDCHA----WRYLIVFDNVWRIS-AWDVIRKILPD-NQNGSRVLIT 251 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~----wr~LivlDdvw~~~-~~~~l~~~~~~-~~~gs~ilvT 251 (798)
-+.+.|+|..|+|||||++.+++..... . .|...+ ..-++++||+.... +=+.+...+.. ...|..||+|
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilit 123 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMT 123 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 4568999999999999999998642211 0 111111 13478899994321 11223222221 1236778888
Q ss_pred eeec
Q 048418 252 LAQI 255 (798)
Q Consensus 252 tR~~ 255 (798)
++..
T Consensus 124 s~~~ 127 (226)
T PRK09087 124 SRLW 127 (226)
T ss_pred CCCC
Confidence 8753
No 89
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.94 E-value=0.002 Score=70.01 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=37.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-++++|++..++.+.+++..+. .+.+-++|..|+||||+|+.+.+
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999887653 44577999999999999998755
No 90
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.94 E-value=0.0033 Score=67.63 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=62.7
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccc---cccc---c---ccc-------------
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNY---VKHY---F---DCH------------- 215 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~---~~~~---F---~~~------------- 215 (798)
-.+++|+++.++.+..++..+. .+.+-++|..|+||||+|+.+.+... .... + +..
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHH
Confidence 3568899999999999987643 44578999999999999999976310 0000 0 000
Q ss_pred ----ce---EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 216 ----AW---RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 216 ----~w---r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
.+ +-++++|++..- ...+.+...+....+.+++|+++..
T Consensus 94 ~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 94 RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 00 347899998643 4455666555554556777777643
No 91
>PRK10536 hypothetical protein; Provisional
Probab=96.93 E-value=0.0026 Score=64.47 Aligned_cols=45 Identities=11% Similarity=0.147 Sum_probs=37.0
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+...+.++.......+.+|.+. .++.+.|.+|.|||+||.++..+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence 3456778888999999988653 48999999999999999987664
No 92
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.92 E-value=0.0016 Score=66.61 Aligned_cols=96 Identities=20% Similarity=0.301 Sum_probs=51.7
Q ss_pred CCceeecHhH-HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc---ccc---cccce-------E----E
Q 048418 158 NRDMVGLDDR-MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK---HYF---DCHAW-------R----Y 219 (798)
Q Consensus 158 ~~~~vG~~~~-~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~---~~F---~~~~w-------r----~ 219 (798)
+..++|.... ...+.++.... ....+-|+|+.|+|||+||+.+++...-. -.| +.... . -
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d 99 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLS 99 (235)
T ss_pred cccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCC
Confidence 3455573332 33333333222 24578899999999999999988742110 011 00000 1 2
Q ss_pred EEEEECCCCh---hhHHHHh-hhcCC-CCCC-cEEEEEeeec
Q 048418 220 LIVFDNVWRI---SAWDVIR-KILPD-NQNG-SRVLITLAQI 255 (798)
Q Consensus 220 LivlDdvw~~---~~~~~l~-~~~~~-~~~g-s~ilvTtR~~ 255 (798)
++++||+... .+|+... ..+.. -..| .++|+||+..
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 7899999643 4555333 22221 1123 4789998853
No 93
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.91 E-value=0.00076 Score=64.44 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=26.3
Q ss_pred cceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhc-ccccCceeccCCccc
Q 048418 471 LRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFW-KMNKLKHLNFGSITL 528 (798)
Q Consensus 471 Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~-~L~~L~~L~L~~~~i 528 (798)
...++|++|.+..++. |..++.|++|.+.+|.+..+-..+. -+++|+.|.+.+|++
T Consensus 44 ~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 3445555555544433 2445555555555555555433333 234455555554444
No 94
>PLN03025 replication factor C subunit; Provisional
Probab=96.88 E-value=0.0036 Score=67.22 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=60.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccc----------cc-------------
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYF----------DC------------- 214 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F----------~~------------- 214 (798)
-.+++|.++.++.+.+++..+. ..-+-++|.+|+||||+|+.+.+... ...| +.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~~vr~~i~~~ 88 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGIDVVRNKIKMF 88 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHHHHHHHHHHH
Confidence 3568898888888887776543 33466899999999999998866310 0000 00
Q ss_pred --------cceEEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 215 --------HAWRYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 215 --------~~wr~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
....-++++|++..- ...+.+...+....+.++++++|..
T Consensus 89 ~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 89 AQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 001347899999754 4455555555444456777777654
No 95
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.88 E-value=0.00011 Score=83.96 Aligned_cols=238 Identities=21% Similarity=0.130 Sum_probs=112.3
Q ss_pred cCccceEEecCCC-ccc--cChhhhhCCCCCcEeecccc--ccccc----hhhhcccccCceeccCCcc-cCCCCCCCCC
Q 048418 468 LFLLRYLKLNIPS-LKS--LPPSLLSNLPNLYTLDMPFS--YIDHT----ADEFWKMNKLKHLNFGSIT-LPAHPGKYCG 537 (798)
Q Consensus 468 L~~Lr~L~L~~~~-i~~--lp~~i~~~L~~L~~L~L~~~--~l~~l----p~~i~~L~~L~~L~L~~~~-i~~~~~p~i~ 537 (798)
+++|+.|.+.++. +.. +-+.. ..+++|+.|++++| ..... +.....+++|++|+++++. ++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-------- 257 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-------- 257 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC--------
Confidence 5666666666653 333 33333 56677777777662 11111 1223344666666666554 32
Q ss_pred CCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeee--ecCCCC
Q 048418 538 SLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVL--VEYQFP 615 (798)
Q Consensus 538 ~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l--~~~~~l 615 (798)
...+......|++|+.|.+.+|.......+......+++|++|++++ |..+....+ .... +
T Consensus 258 -------------d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~---c~~~~d~~l~~~~~~-c 320 (482)
T KOG1947|consen 258 -------------DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG---CHGLTDSGLEALLKN-C 320 (482)
T ss_pred -------------chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec---CccchHHHHHHHHHh-C
Confidence 23333312237788888876664333444555556667777777776 333211111 1112 4
Q ss_pred CCeeEEEEEeccCCCCCccccccCcccceEEEeeccccC--CeeeeCCCCCccccEEEeecCCCCCcceecCCcccccce
Q 048418 616 PRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSG--RKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEF 693 (798)
Q Consensus 616 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~ 693 (798)
++|+.|.+..+. .++.++.+.+.+..... .........+++|+.+.+..+. ..... ..
T Consensus 321 ~~l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~---------~~ 380 (482)
T KOG1947|consen 321 PNLRELKLLSLN----------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG---------LE 380 (482)
T ss_pred cchhhhhhhhcC----------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc---------hH
Confidence 444444333322 13344444443221111 1112233455666666666553 22111 04
Q ss_pred eeEeeCCCC-CCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeecccccc
Q 048418 694 LIINPCAYL-KKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQI 754 (798)
Q Consensus 694 L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l 754 (798)
+.+.+|+.+ ..+........+++.|+++.|.......+..... .+.++..+++.++..
T Consensus 381 ~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~---~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 381 LSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLAD---SCSNLKDLDLSGCRV 439 (482)
T ss_pred HHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhh---hhhccccCCccCccc
Confidence 555666655 3222222333348899999987432222221111 144555566555443
No 96
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.015 Score=66.02 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=44.0
Q ss_pred CCCCceeecHhHHHHHHHHHhcC----CCCeEEEEEecCCCChHHHHHHHHhccccccccc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYF 212 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 212 (798)
.-+.+-+|.++.+++|+++|.-. .-+-.+++.||++|||||.|++.|.. .+...|
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 44677899999999999999542 22347999999999999999999988 444444
No 97
>PRK08118 topology modulation protein; Reviewed
Probab=96.86 E-value=0.00066 Score=65.27 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=27.2
Q ss_pred EEEEEecCCCChHHHHHHHHhcccccc-ccccccce
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSSNYVK-HYFDCHAW 217 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 217 (798)
+.|.|+|++|+||||||+.+++...+. -+||...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999964443 34565554
No 98
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0046 Score=67.58 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=66.3
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccc--------------------ccccc--
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKH--------------------YFDCH-- 215 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~-- 215 (798)
-.+++|-+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+.-.-.. +.+..
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 4678999999999998887643 346678999999999999999876311000 00110
Q ss_pred -----ce-------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 216 -----AW-------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 216 -----~w-------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
.. +-++|+|++..- ..++.+...+.......++|++|.+
T Consensus 94 ~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 94 DAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred cccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 11 348999999764 3677787777665566777777754
No 99
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.81 E-value=0.0024 Score=70.40 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=39.6
Q ss_pred CCCCceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...+++.|+++.++++.+.+... -...+-|-++|.+|+|||++|+++++.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 34567899999999998876421 134567889999999999999999883
No 100
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.0032 Score=72.67 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc-------------------ccccccce-
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK-------------------HYFDCHAW- 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w- 217 (798)
-+++||.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.-.-. +.|.-.++
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 4689999999999999987653 24455699999999999998765521100 01110111
Q ss_pred --------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeeecc
Q 048418 218 --------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQIE 256 (798)
Q Consensus 218 --------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~ 256 (798)
.-++|||++..- ..|+.+...+..-....++|+||++..
T Consensus 94 DAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 94 DAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred cccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 236789999764 568888887766556788888777654
No 101
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0025 Score=67.37 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=47.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhcccccccccc---ccce--------------------EEEEEEECCCCh--hhHHHHh
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFD---CHAW--------------------RYLIVFDNVWRI--SAWDVIR 236 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~w--------------------r~LivlDdvw~~--~~~~~l~ 236 (798)
+.-.-.||++|+||||||+.|.. .....|. .+.- |.+|.+|.|..- .+-+.+
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l- 124 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAG--TTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL- 124 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHH--hhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh-
Confidence 55566899999999999999988 4444442 1111 899999999654 333333
Q ss_pred hhcCCCCCCcEEEE--Eeeecc
Q 048418 237 KILPDNQNGSRVLI--TLAQIE 256 (798)
Q Consensus 237 ~~~~~~~~gs~ilv--TtR~~~ 256 (798)
+|.-.+|.-|+| ||-++.
T Consensus 125 --Lp~vE~G~iilIGATTENPs 144 (436)
T COG2256 125 --LPHVENGTIILIGATTENPS 144 (436)
T ss_pred --hhhhcCCeEEEEeccCCCCC
Confidence 455567887777 555544
No 102
>PTZ00202 tuzin; Provisional
Probab=96.75 E-value=0.0024 Score=68.80 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=44.5
Q ss_pred CCCCCCCCceeecHhHHHHHHHHHhcCC-CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 152 ASSSSKNRDMVGLDDRMEELLDLLIEGP-PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 152 ~~~~~~~~~~vG~~~~~~~i~~~L~~~~-~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+..+.+...++||+.+..++...|.+.+ ...+++.|.|++|+|||||++.+...
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~ 309 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK 309 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3444567899999999999999997543 23569999999999999999999874
No 103
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.73 E-value=0.0018 Score=65.59 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=81.1
Q ss_pred chHHHHHHHHHHhhcchhhcccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCChHHHHHHHHHHHHHh
Q 048418 3 INFRLFSERLGRVLAGEEVTLPDAAKQPIQNLHAEVEIVTSWLSEFEDDISCLLMQKIGELEIDNPDLGTVMDEINCFTY 82 (798)
Q Consensus 3 ~~v~~~~~kl~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~~ 82 (798)
|-|..++++|-++.. .....+.-++.+++.++.+++.+|.||+.....+ + ......+.+..++...||
T Consensus 296 GyVdFlL~NLkdfq~-rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~-----~------nkh~~~ed~a~~ii~kAy 363 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQG-RYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEP-----H------NKHDTNEDCATQIIRKAY 363 (402)
T ss_pred cHHHHHHhhHHHHhc-cccchHHHHHHHHHHHHHHHHHhhHHHHHHHhcc-----c------hhhhhhhhHHHHHHHHHh
Confidence 567888999999888 7777788899999999999999999999985552 3 333348999999999999
Q ss_pred HHHHHHHHhHhhhhcccCCCCcHHHHHHHHHHHHHHHH
Q 048418 83 ECEKVIDTFVNSITQQKSQSGRSMDICDALLGLQSKII 120 (798)
Q Consensus 83 ~~ed~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 120 (798)
++|.++|-+........+...|...+..+|+.++++++
T Consensus 364 evEYVVDaCi~k~~P~Wcl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 364 EVEYVVDACISKSVPHWCLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred heeeeeehhhcCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999865443221112334667777777777654
No 104
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.0048 Score=69.27 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=36.9
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-+++||.+...+.+...+..+. -...+-++|++|+||||+|+.+.+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4679999888888887776553 235678999999999999999966
No 105
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.69 E-value=0.0034 Score=63.90 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=29.5
Q ss_pred eecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 162 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 162 vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.|........+..+.........+.|+|..|+|||+||+.+++.
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45544443333333332233567889999999999999999884
No 106
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.69 E-value=0.0029 Score=62.24 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=33.6
Q ss_pred ecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccce
Q 048418 163 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW 217 (798)
Q Consensus 163 G~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 217 (798)
.+..+....++.|.. ..++.+.|.+|.|||.||-+..-+.-..+.|+..++
T Consensus 4 p~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii 54 (205)
T PF02562_consen 4 PKNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIII 54 (205)
T ss_dssp --SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEE
T ss_pred CCCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 455666777788873 568999999999999999887765333466666665
No 107
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.68 E-value=0.0031 Score=55.65 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=29.4
Q ss_pred EEEecCCCChHHHHHHHHhccccccccc----ccc---------ce-----EEEEEEECCCCh
Q 048418 185 VAILDSIGLDKTAFAAEAYSSNYVKHYF----DCH---------AW-----RYLIVFDNVWRI 229 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~~~~~~~F----~~~---------~w-----r~LivlDdvw~~ 229 (798)
|-|+|.+|+|||+||+.+..+ +..++ ... .| .-.+|+||++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~--l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD--LLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH--HHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 458999999999999997753 22111 112 22 556889999865
No 108
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.65 E-value=0.0049 Score=64.15 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=33.2
Q ss_pred ceeecHhHHHHHHHHHhc-------------CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 160 DMVGLDDRMEELLDLLIE-------------GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~~-------------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++|.+..+++|.+.... ..+...-+-++|.+|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 588988888777644211 123455677899999999999999965
No 109
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.0067 Score=67.17 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=64.5
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc----------------------------
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK---------------------------- 209 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~---------------------------- 209 (798)
-++++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+.-.-.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 4688999988888888887653 23457789999999999998876521100
Q ss_pred ccccccce--------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEe
Q 048418 210 HYFDCHAW--------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITL 252 (798)
Q Consensus 210 ~~F~~~~w--------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTt 252 (798)
.+++...+ +-++|+|++..- ..++.+...+....+.+.+|++|
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 01121111 568899998643 57888887777666677776665
No 110
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.62 E-value=0.0052 Score=70.88 Aligned_cols=221 Identities=18% Similarity=0.165 Sum_probs=124.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccce------------------------------
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW------------------------------ 217 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w------------------------------ 217 (798)
+.++++.|... ..-+.+-|.-++|-|||||+-..... .. .=.-++|
T Consensus 24 R~rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~--~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~ 99 (894)
T COG2909 24 RPRLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWREL--AA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGD 99 (894)
T ss_pred cHHHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHh--cC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccH
Confidence 45677777654 24899999999999999999998641 11 1123556
Q ss_pred ------------------------------EEEEEEECCCCh---hhHHHHhhhcCCCCCCcEEEEEeeeccccc---cc
Q 048418 218 ------------------------------RYLIVFDNVWRI---SAWDVIRKILPDNQNGSRVLITLAQIEIVT---SF 261 (798)
Q Consensus 218 ------------------------------r~LivlDdvw~~---~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~---~~ 261 (798)
...+||||---. .--+.+..-+.....+-..|||||+.--.. -.
T Consensus 100 ~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 100 EAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccccee
Confidence 669999996533 233444444555667889999999875544 00
Q ss_pred ccchhhhhcccee-------------eccCcccC--------CcCCCCchHHHhh-hccCCcc-HHHHHhccc-------
Q 048418 262 QFENGENIGLDFV-------------PTGGPLRA--------TYQGWPFHILYHG-SISLEEN-IDEVLTMSL------- 311 (798)
Q Consensus 262 ~~~~l~~i~~~i~-------------~~g~~L~~--------~~~~W~~~~~~l~-~~~~~~~-i~~~l~~s~------- 311 (798)
+-..+-+|+.+-. ..|..|-. ..+-|-.+.+... ....+++ ...+..+|+
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~d 259 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSD 259 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHH
Confidence 0002222222211 11122211 4566652211100 0110111 111111110
Q ss_pred cccccccCCCCCCchHHHhHhccCCCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCcceeeccCCCCceeEE
Q 048418 312 GLQCVIYCMLPFCLKPCFLYFSVFPAHLEISTRQLYQLWIAEGFISDNNEATAEKYLEQLINRGFVEANKRRAGGTINTC 391 (798)
Q Consensus 312 ~~~~~~y~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~ 391 (798)
-+.-..+|.||+++|.-++-||+++.= .++|+..- +-++-|...+++|-++++|-..-.+ ....|
T Consensus 260 YL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L--------tg~~ng~amLe~L~~~gLFl~~Ldd---~~~Wf 324 (894)
T COG2909 260 YLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL--------TGEENGQAMLEELERRGLFLQRLDD---EGQWF 324 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH--------hcCCcHHHHHHHHHhCCCceeeecC---CCcee
Confidence 011122788999999988889887652 12333222 3345578899999999988643222 22479
Q ss_pred EcCcchHHHHHHHhhc
Q 048418 392 SIPGCCHPVLLGVASE 407 (798)
Q Consensus 392 ~mHdli~dla~~i~~~ 407 (798)
+.|.+..||-+.--..
T Consensus 325 ryH~LFaeFL~~r~~~ 340 (894)
T COG2909 325 RYHHLFAEFLRQRLQR 340 (894)
T ss_pred ehhHHHHHHHHhhhcc
Confidence 9999999987765443
No 111
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0071 Score=68.22 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=42.1
Q ss_pred CCCCceeecHhHHHHHHHHHhc----CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~----~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-+.+-+|+++-+++|++++.- +.-+=++++.+|++|||||.+|+.|..
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 3467789999999999999864 344568999999999999999999987
No 112
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.58 E-value=0.0026 Score=69.88 Aligned_cols=48 Identities=27% Similarity=0.225 Sum_probs=40.1
Q ss_pred CCceeecHhHHHHHHHHHhcC--CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
++.++||+++.++|..+|... ......+-|+|++|+|||++++.++++
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999998642 234567899999999999999999873
No 113
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.58 E-value=0.0032 Score=62.15 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=44.5
Q ss_pred CCCceeecHhHHHHHHHHHh---cCCCCeEEEEEecCCCChHHHHHHHHhcccccccccc---ccce-------------
Q 048418 157 KNRDMVGLDDRMEELLDLLI---EGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFD---CHAW------------- 217 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~---~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~w------------- 217 (798)
.-+++||-+.-++++.-++. ...+.+.-+-.||++|+||||||+.|.+. ....|. ..+-
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~~~sg~~i~k~~dl~~il~~l 99 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFKITSGPAIEKAGDLAAILTNL 99 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EEEEECCC--SCHHHHHHHHT-
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeEeccchhhhhHHHHHHHHHhc
Confidence 35789999988887655553 23445777889999999999999999994 443442 1111
Q ss_pred --EEEEEEECCCCh
Q 048418 218 --RYLIVFDNVWRI 229 (798)
Q Consensus 218 --r~LivlDdvw~~ 229 (798)
+-++.+|.+..-
T Consensus 100 ~~~~ILFIDEIHRl 113 (233)
T PF05496_consen 100 KEGDILFIDEIHRL 113 (233)
T ss_dssp -TT-EEEECTCCC-
T ss_pred CCCcEEEEechhhc
Confidence 677888998654
No 114
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.0089 Score=67.99 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=64.8
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccc----cc--c-------------cccccce-
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNY----VK--H-------------YFDCHAW- 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~----~~--~-------------~F~~~~w- 217 (798)
-.+++|-+..++.+.+.+..+. -...+-++|+.|+||||+|+.+.+.-. .. . .|...++
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 4678999999999999886643 245577899999999999999876210 00 0 0100000
Q ss_pred --------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 218 --------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 218 --------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
+-++|+|++..- ..++.+...+......+.+|++|.+
T Consensus 94 daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 94 DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTD 158 (546)
T ss_pred ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECC
Confidence 558999998643 5678888777766556766655543
No 115
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.0086 Score=68.47 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=66.7
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc-------------------ccc-cccce
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK-------------------HYF-DCHAW 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F-~~~~w 217 (798)
-.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.-.-. +.| |..-.
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 4689999999999999997653 24677899999999999999886521100 011 11000
Q ss_pred --------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 218 --------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 218 --------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
+-++|+|+|..- ...+.+...+.....+.++|++|.+.
T Consensus 93 DAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 93 DAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred cccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 347889999754 56777777776655667788777653
No 116
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.50 E-value=0.011 Score=64.72 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccc---c-----------------cccccccce
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNY---V-----------------KHYFDCHAW 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~---~-----------------~~~F~~~~w 217 (798)
-.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+...-. . ..+|+...+
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 4578999999999999887643 245678899999999999988764210 0 012222111
Q ss_pred --------------------------EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 218 --------------------------RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 218 --------------------------r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
+-++|+|++.. ....+.+...+......+.+|++|.+.
T Consensus 92 ~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 157 (355)
T TIGR02397 92 DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEP 157 (355)
T ss_pred eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCH
Confidence 44788998743 356777776665555567777776443
No 117
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.49 E-value=0.0053 Score=56.28 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=18.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-+++.|+|.+|+||||+++.+.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999884
No 118
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.0065 Score=68.58 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=65.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc----------ccccc---cce-------
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK----------HYFDC---HAW------- 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----------~~F~~---~~w------- 217 (798)
-.+++|-+..++.+...+..+. -..-+-++|..|+||||+|+.+++.-.-. ..+.| +.+
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 4678999999988888776543 24567789999999999999997631110 00111 000
Q ss_pred ------------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEe
Q 048418 218 ------------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITL 252 (798)
Q Consensus 218 ------------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTt 252 (798)
+-++|+|+++.- ..|+.+...+....+.+++|++|
T Consensus 99 v~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 99 IIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 568999999874 67888887777655666766544
No 119
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.47 E-value=0.0018 Score=58.51 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=20.1
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
||.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 120
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.47 E-value=0.0064 Score=55.65 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=19.2
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|-|+|..|+||||+|+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999985
No 121
>CHL00181 cbbX CbbX; Provisional
Probab=96.47 E-value=0.0093 Score=62.67 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=32.1
Q ss_pred CceeecHhHHHHHHHHHh---c-------C---CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLI---E-------G---PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~---~-------~---~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|.+..+++|.++.. - + ...-..+-++|.+|+||||+|+.+++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 468888888876655431 1 1 11223477899999999999999955
No 122
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.47 E-value=0.011 Score=59.27 Aligned_cols=98 Identities=10% Similarity=0.256 Sum_probs=63.6
Q ss_pred CCCCCCceeecHhHHHHHHHHH---hcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccce-------------
Q 048418 154 SSSKNRDMVGLDDRMEELLDLL---IEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW------------- 217 (798)
Q Consensus 154 ~~~~~~~~vG~~~~~~~i~~~L---~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w------------- 217 (798)
..+.-++++|.|..++.+++=. ..+. ...-+-+||..|.|||+++|++.+.-.-++ .++-
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~~L~~l~~l 97 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKEDLGDLPEL 97 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHHHhccHHHH
Confidence 3455678999999999887633 2232 355566799999999999999987311111 1111
Q ss_pred ---------EEEEEEECCCCh---hhHHHHhhhcCCC---CCCcEEEEEeeec
Q 048418 218 ---------RYLIVFDNVWRI---SAWDVIRKILPDN---QNGSRVLITLAQI 255 (798)
Q Consensus 218 ---------r~LivlDdvw~~---~~~~~l~~~~~~~---~~gs~ilvTtR~~ 255 (798)
||+|.+||+--+ .....++..+..+ .+..-+|..|-+.
T Consensus 98 ~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 98 LDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred HHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 999999999633 4677777766532 2334444444443
No 123
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.46 E-value=0.0025 Score=67.91 Aligned_cols=46 Identities=13% Similarity=0.360 Sum_probs=40.6
Q ss_pred ceeecHhHHHHHHHHHhcC----CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 160 DMVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~~~----~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+++|.++.++++++++... +.+-+++.++|++|.||||||+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999652 335689999999999999999999884
No 124
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.46 E-value=0.0045 Score=59.34 Aligned_cols=84 Identities=25% Similarity=0.253 Sum_probs=66.3
Q ss_pred cCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccch--hhhcccccCceec
Q 048418 445 FKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA--DEFWKMNKLKHLN 522 (798)
Q Consensus 445 ~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~ 522 (798)
......+||++|.+..++ .+..++.|..|.|++|.|+.+.+.+-.-+++|++|.|.+|++..+. ..+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345678899999876554 5677889999999999999988888455778999999999877663 3366788999998
Q ss_pred cCCcccC
Q 048418 523 FGSITLP 529 (798)
Q Consensus 523 L~~~~i~ 529 (798)
+-+|.+.
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 7777665
No 125
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.44 E-value=0.0036 Score=63.06 Aligned_cols=93 Identities=12% Similarity=0.163 Sum_probs=52.7
Q ss_pred ceeecH-hHHHHHHHHHhc-CCCCeEEEEEecCCCChHHHHHHHHhccccccccc-cccc-e------------------
Q 048418 160 DMVGLD-DRMEELLDLLIE-GPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYF-DCHA-W------------------ 217 (798)
Q Consensus 160 ~~vG~~-~~~~~i~~~L~~-~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~-w------------------ 217 (798)
.++|-. ...-...+.+.. ++.....+-|+|..|+|||.|.+++++. +.+.. +.++ +
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~ 87 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLSAEEFIREFADALRDGE 87 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEEHHHHHHHHHHHHHTTS
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeecHHHHHHHHHHHHHccc
Confidence 445632 223334444443 3334556789999999999999999984 32211 1111 1
Q ss_pred ----------EEEEEEECCCCh---hhHHHHh-hhcCC-CCCCcEEEEEeee
Q 048418 218 ----------RYLIVFDNVWRI---SAWDVIR-KILPD-NQNGSRVLITLAQ 254 (798)
Q Consensus 218 ----------r~LivlDdvw~~---~~~~~l~-~~~~~-~~~gs~ilvTtR~ 254 (798)
-=++++|||... ..|.+.. ..+.. ...|-+||+|++.
T Consensus 88 ~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 88 IEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp HHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred chhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 347899999764 2343332 22221 1346789999864
No 126
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.44 E-value=0.0079 Score=74.71 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=49.1
Q ss_pred cCCCCCCchHHHhHhccCCCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCcceeeccCCCCceeEEEcCcch
Q 048418 318 YCMLPFCLKPCFLYFSVFPAHLEISTRQLYQLWIAEGFISDNNEATAEKYLEQLINRGFVEANKRRAGGTINTCSIPGCC 397 (798)
Q Consensus 318 y~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli 397 (798)
++.||++.+..++..|+++ .|+.+ +.. .+.. .+.+...+++|...++|...... .+ ..|+.|+++
T Consensus 260 ~~~l~~~~~~~l~~~a~~~---~~~~~-l~~-----~l~~---~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~ 324 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLR---SMNDA-LIV-----RVTG---EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLF 324 (903)
T ss_pred HhcCCHHHHHHHHHhcccc---cCCHH-HHH-----HHcC---CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHH
Confidence 7899999999999999987 23422 221 1111 12257789999999987543211 12 367889999
Q ss_pred HHHHHHHh
Q 048418 398 HPVLLGVA 405 (798)
Q Consensus 398 ~dla~~i~ 405 (798)
+++.....
T Consensus 325 r~~l~~~l 332 (903)
T PRK04841 325 ASFLRHRC 332 (903)
T ss_pred HHHHHHHH
Confidence 99988764
No 127
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.44 E-value=0.0029 Score=68.11 Aligned_cols=35 Identities=9% Similarity=-0.141 Sum_probs=28.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhccccccccccccce
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW 217 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 217 (798)
=..++|+|.+|.|||||++.+++.-.. ++|+..+|
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~ 202 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELI 202 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEE
Confidence 357899999999999999999995332 37988887
No 128
>PRK08116 hypothetical protein; Validated
Probab=96.43 E-value=0.0027 Score=66.01 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-+.++|..|+|||+||.+|++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~ 137 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE 137 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999984
No 129
>PRK12377 putative replication protein; Provisional
Probab=96.39 E-value=0.0048 Score=63.08 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...+.++|..|+|||+||.++.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~ 124 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR 124 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999999984
No 130
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.39 E-value=0.012 Score=67.77 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=38.6
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|.+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999987653 245678999999999999998865
No 131
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.37 E-value=0.0011 Score=66.04 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=62.0
Q ss_pred HHhhccCceeEEEecCcccccCcccccCcCccceEEecCC--Ccc-ccChhhhhCCCCCcEeeccccccccc--hhhhcc
Q 048418 440 KICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIP--SLK-SLPPSLLSNLPNLYTLDMPFSYIDHT--ADEFWK 514 (798)
Q Consensus 440 ~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~--~i~-~lp~~i~~~L~~L~~L~L~~~~l~~l--p~~i~~ 514 (798)
.....+..|..|++.++.++++. .+..|++|++|.++.| .+. .++..+ .++++|++|++++|++..+ -..+..
T Consensus 37 gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhh
Confidence 33455666777777777665332 3455888999999888 444 666666 7779999999999865543 123667
Q ss_pred cccCceeccCCcccCC
Q 048418 515 MNKLKHLNFGSITLPA 530 (798)
Q Consensus 515 L~~L~~L~L~~~~i~~ 530 (798)
+.+|..|+++.|..++
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 8888888888887653
No 132
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.30 E-value=0.0043 Score=62.51 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=25.1
Q ss_pred EEEEEecCCCChHHHHHHHHhccccccccccccce
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW 217 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 217 (798)
-.+.|+|..|.|||||++.+.. ...+.|+...+
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l 46 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFL 46 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEE
Confidence 3678999999999999999876 35556644433
No 133
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.0022 Score=59.19 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.--|+|.||+|+||||+++++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 346899999999999999999983
No 134
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.014 Score=67.23 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=64.3
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccc------c-------------------ccc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYV------K-------------------HYF 212 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~------~-------------------~~F 212 (798)
-+++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.-.- . .|.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 4678998888888888887653 3466789999999999999988331000 0 011
Q ss_pred cccce--------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 213 DCHAW--------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 213 ~~~~w--------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
|...+ .-++|+|+|..- ..++.+...+..-....++|++|.+
T Consensus 94 D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 94 DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 11111 337899999754 5788888777665556677666543
No 135
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.26 E-value=0.0068 Score=73.45 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=37.5
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.++||+.+.+++++.|.... -.-+-++|.+|+||||+|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999997754 233458999999999999998773
No 136
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.26 E-value=0.01 Score=65.22 Aligned_cols=50 Identities=20% Similarity=0.139 Sum_probs=39.0
Q ss_pred CCCCceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-.++.|.+..+++|.+.+... -...+-|-++|.+|.|||++|+.+.+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34457889999999888766421 124677889999999999999999884
No 137
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.26 E-value=0.011 Score=67.38 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=38.6
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-.+++|.+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999886653 235677999999999999999865
No 138
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.25 E-value=0.0097 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+.|+|.+|+||||+|+.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 57889999999999999999874
No 139
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.019 Score=65.69 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=38.2
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987653 245678899999999999988865
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.20 E-value=0.013 Score=61.64 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=30.5
Q ss_pred CceeecHhHHHHHHHHHh---cC----------CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLI---EG----------PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~---~~----------~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++|.++.+++|.++.. .. .....-+-++|.+|+||||+|+.+..
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 357888888877765422 10 01122477899999999999966544
No 141
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.19 E-value=0.0015 Score=65.26 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=45.2
Q ss_pred CcccccCcCccceEEecCCCccccChhhhhCCCCCcEeecccc--cc-ccchhhhcccccCceeccCCcccC
Q 048418 461 YPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFS--YI-DHTADEFWKMNKLKHLNFGSITLP 529 (798)
Q Consensus 461 lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~--~l-~~lp~~i~~L~~L~~L~L~~~~i~ 529 (798)
+....-.+..|..|++.+..++++-. |-.|++|++|+++.| .+ ..++....++++|++|++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33334445677777777766665533 246788999999888 32 344544556799999999988876
No 142
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.016 Score=64.41 Aligned_cols=46 Identities=22% Similarity=0.188 Sum_probs=38.0
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.++||-+..+..+..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999988887654 234578999999999999999976
No 143
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.016 Score=65.06 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=64.5
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc------cc------------cc--ccccccce
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS------NY------------VK--HYFDCHAW 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~------~~------------~~--~~F~~~~w 217 (798)
-.++||-+..++.+.+.+..+. -..-+-++|..|+||||+|+.+..- +. +. .+.|..-+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 4689999988888888776543 2347889999999999999888641 10 00 11121111
Q ss_pred --------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEee
Q 048418 218 --------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLA 253 (798)
Q Consensus 218 --------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR 253 (798)
+=++|+|++..- ...+.+...+..-.+.+++|++|.
T Consensus 91 daas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 91 DAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred ecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 457899998643 567778777776666777777664
No 144
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.019 Score=63.00 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=38.5
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|.+...+.+.+.+..+. -.+.+-++|..|+||||+|+.+.+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999997653 245788999999999999998866
No 145
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.018 Score=68.13 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=65.3
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccc-------------------cccccce-
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKH-------------------YFDCHAW- 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w- 217 (798)
-.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.-.-.. .|.-.++
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 4689999999999999887643 235567899999999999999886321100 0100010
Q ss_pred --------------------------EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 218 --------------------------RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 218 --------------------------r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
+-++|+|++.. ...++.|...+..-....++|++|.+.
T Consensus 94 dAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 94 DAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred ccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 45889999865 367788877776555556666655443
No 146
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.21 Score=58.57 Aligned_cols=85 Identities=16% Similarity=0.326 Sum_probs=60.4
Q ss_pred CCceeecHhHHHHHHHHHhc-------CCCCeEEEEEecCCCChHHHHHHHHhc----cccccccccccce---------
Q 048418 158 NRDMVGLDDRMEELLDLLIE-------GPPQLSVVAILDSIGLDKTAFAAEAYS----SNYVKHYFDCHAW--------- 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~-------~~~~~~vi~i~G~gGiGKTtLa~~v~~----~~~~~~~F~~~~w--------- 217 (798)
...++|-+...+.|.+.+.- +..++.+.-.+|+.|||||-||+.+.. ++.---.||..=|
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrL 569 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRL 569 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHH
Confidence 46789999999999888753 234578888899999999999888755 3322234555444
Q ss_pred ------------------------EEEEEEECCCCh--hhHHHHhhhcCCC
Q 048418 218 ------------------------RYLIVFDNVWRI--SAWDVIRKILPDN 242 (798)
Q Consensus 218 ------------------------r~LivlDdvw~~--~~~~~l~~~~~~~ 242 (798)
--+|+||.|-.. +-.+-+...|.++
T Consensus 570 IGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 570 IGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred hCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 338889999754 5666666666543
No 147
>PRK08181 transposase; Validated
Probab=96.12 E-value=0.0046 Score=64.04 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-+.++|..|+|||.||..+.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH
Confidence 3488999999999999999986
No 148
>PRK06696 uridine kinase; Validated
Probab=96.09 E-value=0.0077 Score=61.05 Aligned_cols=41 Identities=24% Similarity=0.201 Sum_probs=33.8
Q ss_pred cHhHHHHHHHHHhc-CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 164 LDDRMEELLDLLIE-GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 164 ~~~~~~~i~~~L~~-~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
|..-.++|.+.+.. ......+|+|.|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 55667777777764 345689999999999999999999988
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.07 E-value=0.0076 Score=72.20 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=36.9
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.++||+.+.+++++.|.... ..-+-++|.+|+|||++|+.+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 478999999999999987653 23345899999999999999887
No 150
>PRK07667 uridine kinase; Provisional
Probab=96.03 E-value=0.0077 Score=59.50 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+.|.+.+....++..+|||-|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4667777776666679999999999999999999988
No 151
>PRK06526 transposase; Provisional
Probab=95.99 E-value=0.0053 Score=63.21 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.-+.++|.+|+|||+||..+.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 345789999999999999998763
No 152
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.99 E-value=0.017 Score=63.71 Aligned_cols=75 Identities=23% Similarity=0.280 Sum_probs=56.0
Q ss_pred EEEEecCCCChHHHHHHHHhcccccc---ccccccce-------------------EEEEEEECCCChhhHHHHhhhcCC
Q 048418 184 VVAILDSIGLDKTAFAAEAYSSNYVK---HYFDCHAW-------------------RYLIVFDNVWRISAWDVIRKILPD 241 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~w-------------------r~LivlDdvw~~~~~~~l~~~~~~ 241 (798)
++.|+|+.++||||+++.+...-.-. -.|+-... +..|+||.|-...+|+.....+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d 118 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYD 118 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHc
Confidence 99999999999999998776631111 11211111 368999999999999999988888
Q ss_pred CCCCcEEEEEeeeccccc
Q 048418 242 NQNGSRVLITLAQIEIVT 259 (798)
Q Consensus 242 ~~~gs~ilvTtR~~~v~~ 259 (798)
.++. +|++|+-+..+..
T Consensus 119 ~~~~-~v~itgsss~ll~ 135 (398)
T COG1373 119 RGNL-DVLITGSSSSLLS 135 (398)
T ss_pred cccc-eEEEECCchhhhc
Confidence 7777 9999988776543
No 153
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.98 E-value=0.0074 Score=67.60 Aligned_cols=46 Identities=15% Similarity=0.362 Sum_probs=39.8
Q ss_pred CceeecHhHHHHHHHHHhc----CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~----~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|.++.+++|++.|.. -+.+-+++.++|++|+||||||+.+.+
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 3689999999999999933 234568999999999999999999988
No 154
>PRK09183 transposase/IS protein; Provisional
Probab=95.97 E-value=0.0056 Score=63.35 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+.|+|..|+|||+||..+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4677999999999999999865
No 155
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.023 Score=64.59 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=64.8
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccc-------------------cc-cccce
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKH-------------------YF-DCHAW 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-------------------~F-~~~~w 217 (798)
-.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.-.-.. .| |..-.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 4679999999999999997653 245677899999999999988866211000 11 10000
Q ss_pred --------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 218 --------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 218 --------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
.-++++|+|..- ...+.+...+..-.+.+++|++|.+
T Consensus 94 daas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 94 DAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 347889999753 5677777776665556777766643
No 156
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.93 E-value=0.015 Score=60.52 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=48.5
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccc--cccce-----------------------EEEEEEECCCCh--hhHH
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYF--DCHAW-----------------------RYLIVFDNVWRI--SAWD 233 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~w-----------------------r~LivlDdvw~~--~~~~ 233 (798)
.+.-+-.||.+|+||||||+.+.+..+-...| +..+- |..|.+|.|..- .+-+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD 240 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD 240 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh
Confidence 46667789999999999999999854333322 11111 899999999543 2222
Q ss_pred HHhhhcCCCCCCcEEEE--Eeeecc
Q 048418 234 VIRKILPDNQNGSRVLI--TLAQIE 256 (798)
Q Consensus 234 ~l~~~~~~~~~gs~ilv--TtR~~~ 256 (798)
.-+|.-.+|+-++| ||-++.
T Consensus 241 ---~fLP~VE~G~I~lIGATTENPS 262 (554)
T KOG2028|consen 241 ---TFLPHVENGDITLIGATTENPS 262 (554)
T ss_pred ---cccceeccCceEEEecccCCCc
Confidence 23566677887766 566554
No 157
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.03 Score=64.08 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=63.7
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc-------------------ccccccce-
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK-------------------HYFDCHAW- 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w- 217 (798)
-.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+...-.-. +.|.-.++
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 4578999999999999887643 23556789999999999999885521100 00100001
Q ss_pred --------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 218 --------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 218 --------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
+-++|+|++..- ...+.+...+..-...+.+|++|.+
T Consensus 94 ~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 94 DAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred eccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 457899998754 4577777777665556666666644
No 158
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.028 Score=61.70 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=37.2
Q ss_pred CceeecHhHHHHHHHHHhcCCC--------CeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPP--------QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~--------~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++++|-+..++.+.+++..+.. -..-+-++|+.|+||||+|+.+.+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 5688999999999999876421 246678999999999999998754
No 159
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.90 E-value=0.0073 Score=56.09 Aligned_cols=95 Identities=19% Similarity=0.100 Sum_probs=59.2
Q ss_pred eecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccc-cccccccce------------EEEEEEECCCC
Q 048418 162 VGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYV-KHYFDCHAW------------RYLIVFDNVWR 228 (798)
Q Consensus 162 vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~w------------r~LivlDdvw~ 228 (798)
||....++++.+.+..-...-.-|-|.|-.|+||+++|+.++....- ...|...-. .--++++|+..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~ 80 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDR 80 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHH
Confidence 56677777777777542223455688999999999999999985332 233433211 44577899865
Q ss_pred h--hhHHHHhhhcCC-CCCCcEEEEEeeecc
Q 048418 229 I--SAWDVIRKILPD-NQNGSRVLITLAQIE 256 (798)
Q Consensus 229 ~--~~~~~l~~~~~~-~~~gs~ilvTtR~~~ 256 (798)
- +....+...+.. .....|+|.||+..-
T Consensus 81 L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l 111 (138)
T PF14532_consen 81 LSPEAQRRLLDLLKRQERSNVRLIASSSQDL 111 (138)
T ss_dssp S-HHHHHHHHHHHHHCTTTTSEEEEEECC-C
T ss_pred CCHHHHHHHHHHHHhcCCCCeEEEEEeCCCH
Confidence 4 445555544442 256789999988653
No 160
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.89 E-value=0.023 Score=65.72 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc--------------------ccccccc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK--------------------HYFDCHA 216 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~ 216 (798)
.-.++||-+..++.+.+.+..+. -...+-++|..|+||||+|+.+.+.-.-. .|.|...
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 34689999999999988887653 23556789999999999999886531110 0111111
Q ss_pred e--------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 217 W--------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 217 w--------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
+ +-++|+|++..- ...+.+...+..-....++|++|.+.
T Consensus 93 idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 93 IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 1 457889998643 57777777666554455555555443
No 161
>PRK06921 hypothetical protein; Provisional
Probab=95.88 E-value=0.0083 Score=62.30 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-+.++|..|+|||+||.++.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~ 140 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE 140 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 567889999999999999999884
No 162
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.87 E-value=0.0079 Score=61.90 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=27.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhccccccccccccce
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW 217 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 217 (798)
=..++|+|..|+||||||+.+++ .++.+|+..++
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V 102 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSV 102 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEE
Confidence 35689999999999999999999 66666755444
No 163
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.86 E-value=0.0074 Score=56.06 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=18.1
Q ss_pred EEEecCCCChHHHHHHHHhc
Q 048418 185 VAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~ 204 (798)
|-++|..|+|||+||+.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999886
No 164
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.0018 Score=64.76 Aligned_cols=98 Identities=24% Similarity=0.276 Sum_probs=68.3
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccCh--hhhhCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPP--SLLSNLPN 494 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~--~i~~~L~~ 494 (798)
..+++.|.+.|+...+ -.++.+|+.|+||.|+-|.|+++. .+..|++|+.|.|..|.|..+.+ .+ .+|++
T Consensus 18 l~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YL-knlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYL-KNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHH-hcCch
Confidence 4456677777766522 145678889999999988887663 57778888888888888876544 44 77888
Q ss_pred CcEeecccc-ccccc-h----hhhcccccCceec
Q 048418 495 LYTLDMPFS-YIDHT-A----DEFWKMNKLKHLN 522 (798)
Q Consensus 495 L~~L~L~~~-~l~~l-p----~~i~~L~~L~~L~ 522 (798)
|++|.|..| .-..- + ..+.-|+||+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888777 22222 2 3356677777774
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.85 E-value=0.83 Score=55.70 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=37.1
Q ss_pred CCceeecHhHHHHHHHHHhc-------CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIE-------GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~-------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|-+..++.|.+.+.. +......+-++|+.|+|||+||+.+.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~ 561 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS 561 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 46789999999999888752 222345677899999999999988765
No 166
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.84 E-value=0.017 Score=60.39 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=30.9
Q ss_pred ecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHH
Q 048418 163 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEA 202 (798)
Q Consensus 163 G~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v 202 (798)
+|..+..--+++|.+++ +..|.+.|.+|.|||-||-+.
T Consensus 228 prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaA 265 (436)
T COG1875 228 PRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAA 265 (436)
T ss_pred cccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHH
Confidence 36666666678888877 999999999999999998654
No 167
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.032 Score=64.65 Aligned_cols=46 Identities=13% Similarity=-0.040 Sum_probs=36.8
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|-+..++.+.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 4678999998998888886543 235577999999999999987754
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.82 E-value=0.013 Score=71.33 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=37.0
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.++||+.+.++++..|.... -.-+-++|.+|+|||++|+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999997654 233347999999999999988763
No 169
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.81 E-value=0.042 Score=54.00 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc--------------------ccccccce------------
Q 048418 170 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK--------------------HYFDCHAW------------ 217 (798)
Q Consensus 170 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~w------------ 217 (798)
.+.+.+..+. -...+-++|..|+||||+|+.+.+.-.-. .+.|....
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 3455554432 23678899999999999998876521100 11111111
Q ss_pred ---------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 218 ---------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 218 ---------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
+-++|+|++..- ..++.+...+....+.+.+|++|++
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 135 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPS 135 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 567889988543 4677777777665556777777764
No 170
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.81 E-value=0.085 Score=63.21 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=39.7
Q ss_pred CCceeecHhHHHHHHHHHhc----CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~----~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.+.+|.+..+++|+++|.. +...-.++.++|.+|+||||+|+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999998863 123456899999999999999999986
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.76 E-value=0.0099 Score=70.51 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=36.6
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.++||+.+.+++++.|.... ..-+-++|.+|+|||++|+.+.+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997743 22335799999999999999886
No 172
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.76 E-value=0.014 Score=62.45 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-+.++|..|+|||+||.+|.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~ 206 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE 206 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 66899999999999999999884
No 173
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.72 E-value=0.034 Score=56.96 Aligned_cols=97 Identities=16% Similarity=0.248 Sum_probs=71.5
Q ss_pred CCCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccce------------------
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW------------------ 217 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w------------------ 217 (798)
...++++|-+..+.-+.+.+... .....-.+|++|.|||+-|.......--.+.|.+++-
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik 110 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK 110 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc
Confidence 34567889999999888888773 4778889999999999998887663222345666555
Q ss_pred ------------------E-EEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 218 ------------------R-YLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 218 ------------------r-~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
. -.+|||++..- +.|..+.....+...-+|.++.|-.
T Consensus 111 ~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 111 NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 2 45789998754 7999999888876666665555443
No 174
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.70 E-value=0.021 Score=64.44 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=30.7
Q ss_pred CceeecHhH--HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDR--MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~--~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++|.... ......+....+....-+-|+|..|+|||+||+++.+.
T Consensus 123 ~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~ 171 (450)
T PRK00149 123 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNY 171 (450)
T ss_pred ccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345674443 33333333333323456889999999999999999984
No 175
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.043 Score=63.16 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=64.2
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccc----------------------ccccccc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYV----------------------KHYFDCH 215 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~----------------------~~~F~~~ 215 (798)
-.++||-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.-.- ..+.|..
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 4689999999999999987653 2456789999999999999988753110 0111211
Q ss_pred ce--------------------------EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEee
Q 048418 216 AW--------------------------RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITLA 253 (798)
Q Consensus 216 ~w--------------------------r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTtR 253 (798)
.. +-++|+|++.. ....+.|...+..-.....+|++|.
T Consensus 91 eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 91 ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 11 44788999864 3577777777776555666665553
No 176
>PRK07261 topology modulation protein; Provisional
Probab=95.64 E-value=0.0079 Score=58.12 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.|.|+|++|+||||||+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 177
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.62 E-value=0.018 Score=60.95 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=55.9
Q ss_pred ecHhHHHHHHHHHhcCC--CCeEEEEEecCCCChHHHHHHHHhccccccccccccce-----------------------
Q 048418 163 GLDDRMEELLDLLIEGP--PQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW----------------------- 217 (798)
Q Consensus 163 G~~~~~~~i~~~L~~~~--~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w----------------------- 217 (798)
++....+...+++..-. ...+-+-++|..|+|||.||.++.+... +..+.+...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~ 213 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFPEFIRELKNSISDGSVKEKID 213 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHH
Confidence 45555555666665321 2346788999999999999999998532 223333222
Q ss_pred ----EEEEEEECCCCh--hhHHH--Hhhhc-CCC-CCCcEEEEEeee
Q 048418 218 ----RYLIVFDNVWRI--SAWDV--IRKIL-PDN-QNGSRVLITLAQ 254 (798)
Q Consensus 218 ----r~LivlDdvw~~--~~~~~--l~~~~-~~~-~~gs~ilvTtR~ 254 (798)
-=||||||+-.+ ..|.. +...+ ... .++-.+|+||-.
T Consensus 214 ~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 214 AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 447999999644 46653 43333 322 235567777754
No 178
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.61 E-value=0.037 Score=66.26 Aligned_cols=95 Identities=15% Similarity=0.151 Sum_probs=64.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc----------------------cccccc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK----------------------HYFDCH 215 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~----------------------~~F~~~ 215 (798)
-.++||-+..++.|.+++..+. -...+-++|..|+||||+|+.+.+.-.-. .++|..
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 4579999999999999987653 23567899999999999999886531100 112211
Q ss_pred ce--------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEee
Q 048418 216 AW--------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLA 253 (798)
Q Consensus 216 ~w--------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR 253 (798)
.. +-++|||++..- ..++.|...+..-...+.+|++|.
T Consensus 93 eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 93 EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 11 336779988653 677777777776555666665554
No 179
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.021 Score=61.99 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=37.9
Q ss_pred CceeecHhHHHHHHHHHhcC--CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+.+|+++.+++...|..- +....-+-|+|..|+|||+.++.|...
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~ 65 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE 65 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH
Confidence 44899999999999988642 222334889999999999999999884
No 180
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.53 E-value=0.022 Score=63.49 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=30.1
Q ss_pred CceeecHhHH--HHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRM--EELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~--~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++|.+... ..+.++..........+-|+|..|+|||+||+++++.
T Consensus 111 ~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 111 NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred ccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3466755542 2223333322222456889999999999999999984
No 181
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.49 E-value=0.039 Score=66.13 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=37.7
Q ss_pred CCceeecHhHHHHHHHHHhcC-------CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|-+..++.|.+.+... .....++-++|+.|+|||+||+.+..
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 456889999999988887631 22356788999999999999999976
No 182
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.48 E-value=0.019 Score=69.51 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=39.1
Q ss_pred ceeecHhHHHHHHHHHhcC-CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 160 DMVGLDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++||+.+.+.+...+..- .+.-.|+.+.|..|||||+|++.|..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence 3689999999999988653 34567999999999999999999988
No 183
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.0015 Score=65.27 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=65.3
Q ss_pred hccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccch--hhhcccccCce
Q 048418 443 EMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA--DEFWKMNKLKH 520 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~ 520 (798)
+.+.+.+.|++.||.+..+. -..+++.|+.|.|+-|.|++|-+ +..+++|+.|.|+.|.|..+- ..+.++++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 44667788999999987552 34568899999999999998866 378999999999999887774 45788899999
Q ss_pred eccCCcc
Q 048418 521 LNFGSIT 527 (798)
Q Consensus 521 L~L~~~~ 527 (798)
|-|..|.
T Consensus 93 LWL~ENP 99 (388)
T KOG2123|consen 93 LWLDENP 99 (388)
T ss_pred HhhccCC
Confidence 9666653
No 184
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.46 E-value=0.019 Score=58.41 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 179 PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 179 ~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+..+|||.|..|.|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999999987
No 185
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.016 Score=57.02 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCC
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVW 227 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw 227 (798)
.++.+|||-|.+|.||||+|+.+++ .+... +-.+|=+||-.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~-----~~~~I~~D~YY 46 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVE-----KVVVISLDDYY 46 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcC-----cceEeeccccc
Confidence 4578999999999999999999998 33322 12356677754
No 186
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.40 E-value=0.044 Score=66.11 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=38.6
Q ss_pred CCceeecHhHHHHHHHHHhc----CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~----~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+++|.+..+++|.+++.. +..+-.++.++|.+|+||||+|+.+.+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999987742 2223458999999999999999999874
No 187
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.39 E-value=0.047 Score=66.36 Aligned_cols=47 Identities=13% Similarity=0.274 Sum_probs=37.8
Q ss_pred CCceeecHhHHHHHHHHHhc-------CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIE-------GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~-------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|-+..++.+.+.+.. ++....++.++|..|+|||++|+.+.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999998888753 122346888999999999999999986
No 188
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.37 E-value=0.015 Score=58.86 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=40.6
Q ss_pred CCCceeecHhHHHHHHHHHhcC---CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+++|-++-++++-=++... ...+.-+-++|++|.||||||.-|.+.
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 3468999999998887777542 456788899999999999999999994
No 189
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.37 E-value=0.026 Score=57.62 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 167 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 167 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+..+.++..........+-++|.+|+|||+||.++.+.
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~ 122 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNE 122 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344444444332333457889999999999999999884
No 190
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.34 E-value=0.042 Score=66.56 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=38.0
Q ss_pred CCceeecHhHHHHHHHHHhc-------CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIE-------GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~-------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|-+..++.|.+.+.. +.....++-++|+.|+|||.||+.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999998843 223466889999999999999987654
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.34 E-value=0.0055 Score=59.54 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.-+.++|..|+|||.||..+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~ 70 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE 70 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH
Confidence 456889999999999999999874
No 192
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.32 E-value=0.06 Score=60.44 Aligned_cols=46 Identities=17% Similarity=0.077 Sum_probs=37.7
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999887643 235677899999999999988855
No 193
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.31 E-value=0.011 Score=53.85 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=19.4
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|+|.|..|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999884
No 194
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.30 E-value=0.056 Score=62.51 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=39.3
Q ss_pred CCCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
....+++|.+..++.+.+++..+. -..-+-++|..|+||||+|+.+.+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999887653 244677899999999999999866
No 195
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.26 E-value=0.022 Score=65.01 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=29.3
Q ss_pred ceeecHhH--HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 160 DMVGLDDR--MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 160 ~~vG~~~~--~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++|-... ......+.......-..+-|+|..|+|||.|+++|.+.
T Consensus 290 FvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~ 337 (617)
T PRK14086 290 FVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHY 337 (617)
T ss_pred hcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45565443 22333333322222345889999999999999999984
No 196
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.23 E-value=0.034 Score=62.33 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=30.4
Q ss_pred CCceeecHhHH--HHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRM--EELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~--~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+..++|-.... ....++...+ ....-+-|+|..|+|||+||+++.+.
T Consensus 105 dnFv~g~~n~~a~~~~~~~~~~~-~~~n~l~lyG~~G~GKTHLl~ai~~~ 153 (440)
T PRK14088 105 ENFVVGPGNSFAYHAALEVAKNP-GRYNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_pred cccccCCchHHHHHHHHHHHhCc-CCCCeEEEEcCCCCcHHHHHHHHHHH
Confidence 34455744332 3333333322 22445889999999999999999984
No 197
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.22 E-value=0.012 Score=58.13 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=20.2
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
||||.|.+|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 198
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.22 E-value=0.015 Score=58.33 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+|+|.|.+|+||||||+.++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999998
No 199
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.34 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.++.++|..|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 200
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.20 E-value=0.067 Score=65.21 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=38.4
Q ss_pred CCceeecHhHHHHHHHHHhcC-------CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|.+..++.+.+.+... .....++.++|..|+|||++|+.+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999988642 12356788999999999999999875
No 201
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.19 E-value=0.072 Score=62.09 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=37.6
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988887653 235667899999999999998865
No 202
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.18 E-value=0.016 Score=58.01 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+|+|+|..|+||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999873
No 203
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.17 E-value=0.03 Score=63.11 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=39.5
Q ss_pred CCCCCceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 155 SSKNRDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 155 ~~~~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...-.++.|.+..+++|.+.+..+ -...+-+-++|++|.|||++|+++++.
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 334467889999999998876421 123556889999999999999999984
No 204
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.06 Score=58.98 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=51.8
Q ss_pred CCCceeecHhH---HHHHHHHHhcCC-------CCeEEEEEecCCCChHHHHHHHHhcccccc------ccccccce---
Q 048418 157 KNRDMVGLDDR---MEELLDLLIEGP-------PQLSVVAILDSIGLDKTAFAAEAYSSNYVK------HYFDCHAW--- 217 (798)
Q Consensus 157 ~~~~~vG~~~~---~~~i~~~L~~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~w--- 217 (798)
...++-|.|+. +++|+++|.++. .=++=|-.+|++|.|||-||++|.....|- ..||...-
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvG 381 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVG 381 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhccc
Confidence 35567787764 577888898763 235778899999999999999999875552 23432211
Q ss_pred ---------------EEEEEEECCCC
Q 048418 218 ---------------RYLIVFDNVWR 228 (798)
Q Consensus 218 ---------------r~LivlDdvw~ 228 (798)
.+.|.+|.+..
T Consensus 382 ArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 382 ARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred HHHHHHHHHHHHhcCCeEEEEechhh
Confidence 78899998864
No 205
>PRK08233 hypothetical protein; Provisional
Probab=95.15 E-value=0.016 Score=56.55 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47999999999999999999987
No 206
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.08 E-value=0.045 Score=62.63 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=36.8
Q ss_pred CCCCCceeecHhHHHHHHHHHh---cC-------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 155 SSKNRDMVGLDDRMEELLDLLI---EG-------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 155 ~~~~~~~vG~~~~~~~i~~~L~---~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...-++++|.+..++++.+++. .. ....+=+-++|++|+|||+||+.+.+.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3445678998888777665443 21 122445778999999999999999884
No 207
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.07 E-value=0.067 Score=55.60 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 166 DRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 166 ~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-.+++..++..+ .-|-+.|.+|+|||+||+.+.+
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH
Confidence 3345555555543 2345899999999999999975
No 208
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.082 Score=61.34 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=38.1
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999887653 235667899999999999988765
No 209
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.00 E-value=0.11 Score=59.07 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=64.5
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc----ccc----------------ccccccce
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN----YVK----------------HYFDCHAW 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~----~~~----------------~~F~~~~w 217 (798)
-++++|-+..++.+...+..+. -..+.-++|..|+||||+|+.+.+.- ... .|++..-.
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 4679999999999999886653 34566889999999999999765421 000 11111000
Q ss_pred --------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 218 --------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 218 --------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
+-++|+|++..- +..+.+...+..-.+.+++|++|.+
T Consensus 92 daas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 92 DAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred ccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 457899998643 5677777776655556777777755
No 210
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.092 Score=61.21 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=66.4
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccc---------------------ccccccccc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNY---------------------VKHYFDCHA 216 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~~~~ 216 (798)
-++++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+..... ...+|+...
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHE 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEE
Confidence 4689999999999999997653 245678999999999999988655211 112333222
Q ss_pred e--------------------------EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEe-eeccc
Q 048418 217 W--------------------------RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITL-AQIEI 257 (798)
Q Consensus 217 w--------------------------r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTt-R~~~v 257 (798)
. +=++|+|++.. ...++.+...+..-..++.+|++| +...+
T Consensus 95 ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kI 164 (614)
T PRK14971 95 LDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKI 164 (614)
T ss_pred ecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhc
Confidence 1 44778998754 356777877776655566666555 43333
No 211
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.92 E-value=0.023 Score=69.04 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=37.3
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++||+++.+++++.|.... ..-+-++|.+|+|||++|+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999997653 223359999999999999988773
No 212
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.91 E-value=0.022 Score=59.90 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
++|+|+|-|||||||+|-.+..-
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~ 24 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAA 24 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 68999999999999998887663
No 213
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.90 E-value=0.049 Score=53.90 Aligned_cols=82 Identities=9% Similarity=0.109 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccce------------------------------
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW------------------------------ 217 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w------------------------------ 217 (798)
-.+.+..+.... -++..|.|.+|.||||+++.+....+-. .+...+-
T Consensus 6 Q~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~ 82 (196)
T PF13604_consen 6 QREAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAEALEAA-GKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPN 82 (196)
T ss_dssp HHHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHHHHHHT-T--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECC
T ss_pred HHHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHHHHHhC-CCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCc
Confidence 344455554332 3577789999999999999987632111 1221111
Q ss_pred -----------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 218 -----------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 218 -----------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
+-+||+|+.+.. ..+..+....+. .|+|+|+.==.
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 258999999865 467777666554 47788776443
No 214
>CHL00176 ftsH cell division protein; Validated
Probab=94.89 E-value=0.046 Score=63.70 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=35.9
Q ss_pred CCCceeecHhHHHHHHHHH---hcCC-------CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLL---IEGP-------PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L---~~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+++|.++.++++.+.+ .... ...+-|-++|.+|+|||+||+.+.+.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467889888777665554 3321 12456889999999999999999884
No 215
>PRK06547 hypothetical protein; Provisional
Probab=94.88 E-value=0.035 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
....+|+|.|..|+||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999999873
No 216
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.88 E-value=0.03 Score=56.16 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=42.6
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEEC------------CCChhhHHHHhhhcCCCCCCc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDN------------VWRISAWDVIRKILPDNQNGS 246 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDd------------vw~~~~~~~l~~~~~~~~~gs 246 (798)
++..+|-++||+|.||||..|.++.+ +...+.. -|.|=||- +-+..+..++.....-+.||.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~p---pYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGg 90 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTP---PYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGG 90 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH--HhhccCC---CeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcc
Confidence 35678888999999999999999984 3333322 46677773 334456777777666565564
No 217
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.085 Score=60.69 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=37.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4578898888888888886542 2456778999999999999988763
No 218
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.87 E-value=0.12 Score=59.63 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=39.0
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|-+..++.+.+++..+. -...+-++|..|+||||+|+.+.+.
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999997653 3456779999999999999998763
No 219
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.82 E-value=0.079 Score=63.04 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCceeecHhHHHHHHHHHhc-------CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIE-------GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~-------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|-++.++.|.+.+.. .......+-++|+.|+|||++|+.+..
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999988863 122356788999999999999999876
No 220
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.087 Score=59.63 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=37.5
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|-+...+.+.+++..+. -...+-++|..|+||||+|+.+..
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999997653 245567899999999999998765
No 221
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.77 E-value=0.021 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999883
No 222
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.77 E-value=0.11 Score=56.50 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=37.5
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+++|-+..++.+.+.+..+. -...+-++|+.|+||||+|..+..
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999887753 245678999999999999866533
No 223
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.032 Score=57.44 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=26.3
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHA 216 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~ 216 (798)
+..-+.++|.+|+|||.||.++.++.- +..+.+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f 138 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLF 138 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEE
Confidence 466788999999999999999999533 33344433
No 224
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.75 E-value=0.045 Score=61.41 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=29.4
Q ss_pred CceeecHhH--HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDR--MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~--~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++|.... ......+...++....-+-|+|..|+|||+|++++.+
T Consensus 116 nFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~ 163 (450)
T PRK14087 116 NFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKN 163 (450)
T ss_pred cccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHH
Confidence 346675443 2223333322222345688999999999999999988
No 225
>PHA00729 NTP-binding motif containing protein
Probab=94.72 E-value=0.039 Score=55.04 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 170 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 170 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
++++.+...+ ...|.|.|.+|+||||||..+.+.
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHHH
Confidence 4555554443 567889999999999999999873
No 226
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.70 E-value=0.03 Score=67.77 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=37.7
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-+.++||+.+..++++.|.... ..-+-++|.+|+||||+|+.+..
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 3579999999999999987654 23345899999999999999887
No 227
>PRK06762 hypothetical protein; Provisional
Probab=94.59 E-value=0.026 Score=54.17 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 228
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.56 E-value=0.16 Score=54.95 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=39.1
Q ss_pred CCCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.....++|-+...+.+...+..+. -...+-|+|..|+||||+|+.+..
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 345789999999999999987653 345688999999999999987654
No 229
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.54 E-value=0.078 Score=57.15 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=34.6
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCChhhHHHHhh
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRISAWDVIRK 237 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~~~~~~l~~ 237 (798)
+.++|+++|.+|+||||++.++... .... -.++.+|-=|-.....|+++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~----GkkVglI~aDt~RiaAvEQLk~ 290 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGK----KKTVGFITTDHSRIGTVQQLQD 290 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHc----CCcEEEEecCCcchHHHHHHHH
Confidence 4589999999999999999999763 2111 1145555555655555666554
No 230
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.54 E-value=0.32 Score=45.32 Aligned_cols=106 Identities=7% Similarity=0.023 Sum_probs=79.9
Q ss_pred cchHHHHHHHHHHhhcchhhcccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCChHHHHHHHHHHHHH
Q 048418 2 DINFRLFSERLGRVLAGEEVTLPDAAKQPIQNLHAEVEIVTSWLSEFEDDISCLLMQKIGELEIDNPDLGTVMDEINCFT 81 (798)
Q Consensus 2 ~~~v~~~~~kl~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~ 81 (798)
.||++.+++.+...+. +..+....++.-+++|..+++.|..++++.+... . .-+..-+.-++++.+..
T Consensus 8 gaalG~~~~eLlk~v~-~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~-----~------eld~~~~ee~e~L~~~L 75 (147)
T PF05659_consen 8 GAALGAVFGELLKAVI-DASKKSLSFKSILKRLESTLESIIPIIKEIDKLN-----V------ELDRPRQEEIERLKELL 75 (147)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHh-----h------hcCCchhHHHHHHHHHH
Confidence 3677888888888888 8788888899999999999999999999998762 2 22333367788999999
Q ss_pred hHHHHHHHHhHhhhhcccCCCCcH--HHHHHHHHHHHHHHHHHHH
Q 048418 82 YECEKVIDTFVNSITQQKSQSGRS--MDICDALLGLQSKIIDIKQ 124 (798)
Q Consensus 82 ~~~ed~~d~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~l~~i~~ 124 (798)
.++++++++|..-... .+. ++.+++|+++.+.+....+
T Consensus 76 ~~g~~LV~k~sk~~r~-----n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 76 EKGKELVEKCSKVRRW-----NLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHhccccHH-----HHHhhHhHHHHHHHHHHHHHHHhc
Confidence 9999999988653211 111 6678888888777766433
No 231
>PTZ00301 uridine kinase; Provisional
Probab=94.54 E-value=0.028 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|||-|.+|.||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999999887
No 232
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.089 Score=55.15 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=41.6
Q ss_pred CCCCceeecHhHHHHHHHHHhcC----C-------CCeEEEEEecCCCChHHHHHHHHhccccccccc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEG----P-------PQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYF 212 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~----~-------~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F 212 (798)
....++-|.++..++|.+...-+ + ..++=|-.||++|.|||-|||+|.| +....|
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF 213 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF 213 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE
Confidence 34456778999888888775432 1 3567788999999999999999999 455555
No 233
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.51 E-value=0.03 Score=54.37 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=25.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcccccccccc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFD 213 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~ 213 (798)
+..+|.+.|+.|.||||+|+.+++ +....+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~ 36 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYS 36 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCC
Confidence 456999999999999999999998 4443333
No 234
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.49 E-value=0.073 Score=57.90 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=55.6
Q ss_pred CCceeecHhHHH-HHHHHHhc-CCCCeEEEEEecCCCChHHHHHHHHhcccccccccc-c-cce--------------E-
Q 048418 158 NRDMVGLDDRME-ELLDLLIE-GPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFD-C-HAW--------------R- 218 (798)
Q Consensus 158 ~~~~vG~~~~~~-~i~~~L~~-~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~-~~w--------------r- 218 (798)
+..++|-..... .+.....+ +...-..+-|||..|.|||.|++++.|. ...... . ++. |
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~se~f~~~~v~a~~~ 164 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTSEDFTNDFVKALRD 164 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccHHHHHHHHHHHHHh
Confidence 455667554432 22222322 3334678999999999999999999993 333332 1 111 1
Q ss_pred -----------E-EEEEECCCCh---hhH-HHHhhhcCC-CCCCcEEEEEeee
Q 048418 219 -----------Y-LIVFDNVWRI---SAW-DVIRKILPD-NQNGSRVLITLAQ 254 (798)
Q Consensus 219 -----------~-LivlDdvw~~---~~~-~~l~~~~~~-~~~gs~ilvTtR~ 254 (798)
+ ++++||++.. +.| +++...|.. ...|-.||+|++.
T Consensus 165 ~~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 165 NEMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred hhHHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 1 8899999864 223 233344432 1234489998864
No 235
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.45 E-value=0.19 Score=58.09 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=37.9
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|.+...+.+.+.+..+. -...+-++|..|+||||+|+.+..
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999987653 245667899999999999988754
No 236
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.43 E-value=0.051 Score=54.15 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=41.5
Q ss_pred CCCCCceeecHhHHHH---HHHHHhcC----CCCeEEEEEecCCCChHHHHHHHHhccc
Q 048418 155 SSKNRDMVGLDDRMEE---LLDLLIEG----PPQLSVVAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 155 ~~~~~~~vG~~~~~~~---i~~~L~~~----~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 206 (798)
...-++++|-++.+.+ |+++|..+ +.-++-|-.+|++|.|||.+|+++.|..
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 3445789998888754 56777664 3468899999999999999999999954
No 237
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.41 E-value=0.029 Score=58.83 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|+|+|-|||||||+|-.+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5889999999999999888766
No 238
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.37 E-value=0.03 Score=56.24 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|+|.|-||+||||++-.+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998777665
No 239
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.35 E-value=0.028 Score=54.65 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=22.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhccc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~ 206 (798)
..+|+|=||-|+||||||+.+.++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999953
No 240
>PRK03839 putative kinase; Provisional
Probab=94.31 E-value=0.03 Score=54.57 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.1
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.|.|+|++|+||||+|+.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 241
>PRK04040 adenylate kinase; Provisional
Probab=94.28 E-value=0.032 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|+|++|+||||+++.+.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 242
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.27 E-value=0.033 Score=51.81 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|-++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 243
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.25 E-value=0.02 Score=34.35 Aligned_cols=17 Identities=47% Similarity=0.714 Sum_probs=8.9
Q ss_pred cceEEecCCCccccChh
Q 048418 471 LRYLKLNIPSLKSLPPS 487 (798)
Q Consensus 471 Lr~L~L~~~~i~~lp~~ 487 (798)
|++|+|++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 45555555555555544
No 244
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.24 E-value=0.064 Score=62.87 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=40.4
Q ss_pred CCCceeecHhHHHHHHHHHhc---CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIE---GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~---~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++.++|||++.++|...|.. +.....++-|+|++|.|||+.++.|.+.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrE 804 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQL 804 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999998864 2333467889999999999999999763
No 245
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.24 E-value=0.027 Score=55.89 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.8
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
||||.|..|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 246
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.23 E-value=0.58 Score=52.51 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=34.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCChhhHHHHh
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRISAWDVIR 236 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~~~~~~l~ 236 (798)
-+|++++|..|+||||++.++...-..+. ... ++.+|-.|-+....|+++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~--G~~--kV~LI~~Dt~RigA~EQLr 306 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH--GAS--KVALLTTDSYRIGGHEQLR 306 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc--CCC--eEEEEeCCccchhHHHHHH
Confidence 47999999999999999999987321111 110 4566666777665566554
No 247
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.23 E-value=0.042 Score=58.24 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=21.4
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+||.+.|-|||||||.|-.+..
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHH
Confidence 3579999999999999998777655
No 248
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.23 E-value=0.038 Score=61.80 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-+-|+|..|+|||+||+++.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~ 164 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA 164 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 356789999999999999999984
No 249
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.23 E-value=0.035 Score=54.42 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.++|.|+|.+|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999986
No 250
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.20 E-value=0.027 Score=56.84 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|||.|..|+||||+|+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 251
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.20 E-value=0.026 Score=33.80 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=18.6
Q ss_pred ceeEEEecCcccccCcccccCc
Q 048418 447 LLRVLDLGSLVLIQYPSGIENL 468 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~lp~~i~~L 468 (798)
+|++|+|++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 252
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.19 E-value=0.056 Score=61.06 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 170 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 170 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.++++.....++.+|+|.|..|.||||||+.+..
T Consensus 53 ra~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 53 RACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 34555655555689999999999999999999987
No 253
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.13 E-value=0.072 Score=48.63 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 167 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 167 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.+++-+.|...-..-.+|.+.|.-|.||||+++.+...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444445432223458999999999999999999884
No 254
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.10 E-value=0.037 Score=58.08 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|+|+|-|||||||+|-.+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5899999999999998877765
No 255
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.07 E-value=0.16 Score=59.49 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=37.4
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|-+..++.+.+.+..+. -...+-++|+.|+||||+|+.+..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 4678999999999999887653 245567899999999999988864
No 256
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.01 E-value=0.042 Score=57.40 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=18.0
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|++.|-|||||||+|-.+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 588889999999998877665
No 257
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.01 E-value=0.31 Score=48.42 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=63.7
Q ss_pred CCCCceeecHhHHHHHHHHH---hcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccccc----------------
Q 048418 156 SKNRDMVGLDDRMEELLDLL---IEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHA---------------- 216 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L---~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---------------- 216 (798)
++-..++|.|..++.+++=- ..+. .-.-|-.||..|.||+.|+|++.+ ++....-.-+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV~k~dl~~Lp~l~~~ 133 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEVDKEDLATLPDLVEL 133 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEEcHHHHhhHHHHHHH
Confidence 44567999999988887532 2222 245567899999999999999988 3332221111
Q ss_pred -----eEEEEEEECCCCh---hhHHHHhhhcCCC---CCCcEEEEEeeec
Q 048418 217 -----WRYLIVFDNVWRI---SAWDVIRKILPDN---QNGSRVLITLAQI 255 (798)
Q Consensus 217 -----wr~LivlDdvw~~---~~~~~l~~~~~~~---~~gs~ilvTtR~~ 255 (798)
.||.|..||..-+ +....++..+..+ .+...++..|.+.
T Consensus 134 Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 134 LRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred HhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 0999999999643 5677787777643 2334444444443
No 258
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.99 E-value=0.088 Score=47.85 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=40.5
Q ss_pred HHhhccCceeEEEecCcccccCcc-cccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccch-hhhccccc
Q 048418 440 KICEMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA-DEFWKMNK 517 (798)
Q Consensus 440 ~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~ 517 (798)
..|.++++|+.+.+.. .+..++. .+..+.+|+.+.+..+ +..++...|.++.+|+.+.+.. .+..++ ..+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4566666777777664 3443433 3555666777777663 6666666666666677777754 343343 23445666
Q ss_pred CceeccCC
Q 048418 518 LKHLNFGS 525 (798)
Q Consensus 518 L~~L~L~~ 525 (798)
|+.+++..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 66665544
No 259
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.93 E-value=0.045 Score=57.47 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.|+|+|-|||||||+|..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4789999999999999888776
No 260
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.87 E-value=0.036 Score=54.09 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=27.3
Q ss_pred EEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCCh
Q 048418 184 VVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRI 229 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~ 229 (798)
||+|.|.+|.||||+|+.+... ..+ . .+|=+||.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~--~~~---~----~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI--LPN---C----CVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH--cCC---C----eEEccccccCC
Confidence 5899999999999999999983 211 1 23456887654
No 261
>PRK00625 shikimate kinase; Provisional
Probab=93.83 E-value=0.041 Score=53.10 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=19.3
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|.++||.|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 262
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.83 E-value=0.11 Score=57.07 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=36.7
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCChhhHHHHh
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRISAWDVIR 236 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~~~~~~l~ 236 (798)
...||.++|..|+||||+|.++..- .+.. -+|+++|==|......|+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~--l~~~----G~kV~lV~~D~~R~aA~eQLk 148 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY--YQRK----GFKPCLVCADTFRAGAFDQLK 148 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHC----CCCEEEEcCcccchhHHHHHH
Confidence 4789999999999999999988762 2211 126677766777777777765
No 263
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.81 E-value=0.2 Score=53.90 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=62.4
Q ss_pred ceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc--------------------ccccccce--
Q 048418 160 DMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK--------------------HYFDCHAW-- 217 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~w-- 217 (798)
+++|-+....++..+......-..-+-++|+.|+||||+|..+.+.-.-. .|.+..-.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 46777888888888887544334458899999999999999887631100 11111111
Q ss_pred ----------------------------EEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEee
Q 048418 218 ----------------------------RYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLA 253 (798)
Q Consensus 218 ----------------------------r~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR 253 (798)
+-++++|++..- +.-..+...+..-.+.+++|++|.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 678889988654 445556655555556778888877
No 264
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.80 E-value=0.063 Score=49.80 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
++|.|+|..|+|||||++.+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999994
No 265
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=93.79 E-value=0.11 Score=54.78 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=41.2
Q ss_pred CCceeecHhHHHHHHHHHhcCCC-CeEEEEEecCCCChHHHHHHHHhccc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPP-QLSVVAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~-~~~vi~i~G~gGiGKTtLa~~v~~~~ 206 (798)
++.+.+|+.....+..++...+. -++.|-|+|-.|.|||.+.+++.+..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc
Confidence 56788999999999998877654 35666899999999999999999865
No 266
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.79 E-value=0.25 Score=51.23 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccc------------c---------cccc----cccce----
Q 048418 167 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNY------------V---------KHYF----DCHAW---- 217 (798)
Q Consensus 167 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~------------~---------~~~F----~~~~w---- 217 (798)
..++++..|... .+..-++|+|..|.|||||++.+..... + ...+ +..++
T Consensus 97 ~~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 97 AADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred cHHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccc
Confidence 345555555533 2367899999999999999999876311 1 0000 00000
Q ss_pred -------------------EEEEEEECCCChhhHHHHhhhcCCCCCCcEEEEEeeeccc
Q 048418 218 -------------------RYLIVFDNVWRISAWDVIRKILPDNQNGSRVLITLAQIEI 257 (798)
Q Consensus 218 -------------------r~LivlDdvw~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v 257 (798)
.=+|++|.+-..+.+..+...+. .|..||+||.+..+
T Consensus 176 v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 176 VLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred ccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 45788999877676776665553 47789999987665
No 267
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.77 E-value=0.086 Score=55.16 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.1
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+.+|||.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988755
No 268
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.42 Score=47.88 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=37.9
Q ss_pred CceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhccccccccccccc
Q 048418 159 RDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHA 216 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~ 216 (798)
.++-|-.+..+++-+...-+ -..++=|-.+|++|.|||-+|++|.| +....|-.++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfirvi 243 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIRVI 243 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEeeh
Confidence 34556666666665543221 13467778899999999999999999 5656664333
No 269
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.69 E-value=0.048 Score=53.06 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++.|+|+.|+||||+|+.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999977
No 270
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.67 E-value=0.32 Score=58.11 Aligned_cols=48 Identities=21% Similarity=0.181 Sum_probs=38.2
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...++|....+.++.+.+..-...-.-|-|+|..|+|||++|+.|++.
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 357999999999988877643223446779999999999999999874
No 271
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.2 Score=58.40 Aligned_cols=47 Identities=21% Similarity=0.148 Sum_probs=38.0
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++.+..++..+. -..-+-++|..|+||||+|+.+.+.
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH
Confidence 4678999999999999887653 1345678999999999999998663
No 272
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.66 E-value=0.081 Score=58.72 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=36.8
Q ss_pred CceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++.|.+..+++|.+.+.-. -...+-+.++|.+|+|||++|++|.+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999998888876421 123456779999999999999999983
No 273
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.65 E-value=0.15 Score=50.67 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...|+|+|.+|+|||||.+.+.+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 568999999999999999999885
No 274
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.65 E-value=0.18 Score=58.45 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=39.9
Q ss_pred CCCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.....++|....+.++++.+..-...-.-|-|+|..|+|||++|+.|++.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 34578999999999999988653223345669999999999999999864
No 275
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.63 E-value=0.078 Score=52.78 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++.|+|..|.||||+.+.|..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999983
No 276
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.60 E-value=0.051 Score=52.48 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...|.++|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999883
No 277
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.58 E-value=0.063 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+++|+|..|.|||||++.+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999986
No 278
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.58 E-value=0.038 Score=49.59 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=17.8
Q ss_pred EEEecCCCChHHHHHHHHhcccccccccc
Q 048418 185 VAILDSIGLDKTAFAAEAYSSNYVKHYFD 213 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~~~~~~~F~ 213 (798)
|-++|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 46899999999999999988 4555553
No 279
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.58 E-value=0.053 Score=52.79 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|.|+|..|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999998
No 280
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.57 E-value=0.12 Score=51.04 Aligned_cols=48 Identities=21% Similarity=0.303 Sum_probs=30.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCChhhHHHH
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRISAWDVI 235 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~~~~~~l 235 (798)
++||.+||+.|+||||.+-++......+ -+++.+|==|-......+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~------~~~v~lis~D~~R~ga~eQL 48 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK------GKKVALISADTYRIGAVEQL 48 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT------T--EEEEEESTSSTHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc------cccceeecCCCCCccHHHHH
Confidence 4799999999999999988887632222 12455554455555434333
No 281
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.57 E-value=0.11 Score=52.12 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHh
Q 048418 182 LSVVAILDSIGLDKTAFAAEAY 203 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~ 203 (798)
.+++.|+|..|.||||+.+.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4888999999999999999986
No 282
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.56 E-value=0.059 Score=52.22 Aligned_cols=24 Identities=21% Similarity=0.028 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+|.|+|.+|+||||+|+.+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999999883
No 283
>PRK05439 pantothenate kinase; Provisional
Probab=93.56 E-value=0.087 Score=55.55 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.3
Q ss_pred CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 179 PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 179 ~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
....-+|||-|..|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999999877
No 284
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.56 E-value=0.078 Score=58.84 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=35.8
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++|+++..+.+...+..+. -|-+.|.+|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHH
Confidence 568899999999888887654 467899999999999999986
No 285
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.54 E-value=0.06 Score=56.31 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|+|.|-||+||||+|-.+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 5788899999999999888776
No 286
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.52 E-value=0.0041 Score=60.66 Aligned_cols=89 Identities=19% Similarity=0.092 Sum_probs=77.4
Q ss_pred HHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCc
Q 048418 440 KICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLK 519 (798)
Q Consensus 440 ~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 519 (798)
.-+..++..++||++.+.+-.+-..++.+..|..|+++.|.+..+|.+. +.+..+..+++..|+.+..|.+.+++++++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 3456788899999999987777777888889999999999999999998 999999999999999999999999999999
Q ss_pred eeccCCcccC
Q 048418 520 HLNFGSITLP 529 (798)
Q Consensus 520 ~L~L~~~~i~ 529 (798)
++++-+|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9988887654
No 287
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.52 E-value=0.2 Score=55.19 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+|+++|..|+||||++.++..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999987754
No 288
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=93.49 E-value=0.064 Score=56.10 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+||+|.|-|||||||+|-.+..
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~ 24 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSA 24 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6889999999999998877766
No 289
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.46 E-value=0.048 Score=53.09 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|+|.|..|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 290
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.42 E-value=0.069 Score=51.28 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=32.8
Q ss_pred eeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 161 MVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 161 ~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
++|....+.++++.+..-.....-|-|+|-.|+||+.+|+.|++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888888653222234459999999999999999984
No 291
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.37 E-value=0.082 Score=52.25 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=18.5
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|+|.|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 689999999999999988544
No 292
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=93.33 E-value=0.076 Score=56.24 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.1
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.++|+|.|-||+||||.|-.+..
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~ 26 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLA 26 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHH
Confidence 467899999999999998777654
No 293
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.32 E-value=0.13 Score=56.32 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|+.|.||||||+.+-.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999865
No 294
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.30 E-value=0.05 Score=53.12 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=19.6
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 295
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.069 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|+.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988776
No 296
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.29 E-value=0.069 Score=52.96 Aligned_cols=25 Identities=16% Similarity=0.025 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++..+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999988
No 297
>PRK06217 hypothetical protein; Validated
Probab=93.24 E-value=0.057 Score=52.79 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=20.3
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.|.|.|.+|.||||+|+++.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 298
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.20 E-value=0.39 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=19.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-+++.++|.+|+||||++.++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999998777643
No 299
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.18 E-value=0.098 Score=51.35 Aligned_cols=46 Identities=26% Similarity=0.246 Sum_probs=36.7
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-.++||-++.++++.-+-.+++ +.-+-|-||+|+||||-++.+..
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 34689999999998877666654 77788999999999997666554
No 300
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.16 E-value=0.43 Score=45.54 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=60.2
Q ss_pred ecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc----ccc---------------cccccccce------
Q 048418 163 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS----NYV---------------KHYFDCHAW------ 217 (798)
Q Consensus 163 G~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~----~~~---------------~~~F~~~~w------ 217 (798)
|-+...+.+.+.+..+. -...+-++|..|+||+|+|..+.+. ... ..|-|....
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 34555666666665543 3456788999999999998876542 111 112222222
Q ss_pred -----------------------EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEeeeccc
Q 048418 218 -----------------------RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITLAQIEI 257 (798)
Q Consensus 218 -----------------------r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTtR~~~v 257 (798)
+=++|+||+.. .+.++.+...+..-..++++|++|++.+-
T Consensus 80 ~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 80 KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 55678899875 36788888887777778999999887653
No 301
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.15 E-value=0.058 Score=50.39 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
||.|.|..|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 302
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.14 E-value=0.077 Score=52.97 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=24.9
Q ss_pred HhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 175 LIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 175 L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+....+.|.|+|..|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 6 LFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred ccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 334445678999999999999999999986
No 303
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.09 E-value=0.28 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++.++|.+|+||||+|.++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999875
No 304
>PRK13949 shikimate kinase; Provisional
Probab=93.01 E-value=0.067 Score=51.51 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+-|.|+|+.|.||||+++.+.+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999883
No 305
>PRK13947 shikimate kinase; Provisional
Probab=93.00 E-value=0.066 Score=51.64 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.6
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 306
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.99 E-value=0.17 Score=45.32 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=35.9
Q ss_pred CceeecHhHHHHHHHHHhc----C-CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIE----G-PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~----~-~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++|-.-..+.|++.+.+ + +.++-|++..|..|+|||.+|+.|.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4677777666667666643 2 457899999999999999988887763
No 307
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.97 E-value=0.064 Score=50.47 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=19.6
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+|.+.|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999999884
No 308
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.88 E-value=0.12 Score=56.12 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=36.6
Q ss_pred CCceeecHhHHHHHHHHHhcC------------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+..++|.++.++.+.-.+... +...+-|-++|++|+||||+|+.+...
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356888888888886655421 123467889999999999999999883
No 309
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.87 E-value=0.24 Score=49.08 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|+|..|.||||+++.+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998665
No 310
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.82 E-value=0.08 Score=49.83 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=18.7
Q ss_pred EEEEecCCCChHHHHHHHHh
Q 048418 184 VVAILDSIGLDKTAFAAEAY 203 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~ 203 (798)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 311
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.79 E-value=0.21 Score=54.24 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=42.9
Q ss_pred CCCCceeecHhHHHHHHHHHhcC--CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+..++||+.++..+.+++... .+..+-+-|.|-+|.|||.+...|+.+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~ 198 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDS 198 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHh
Confidence 34678999999999999999764 345677889999999999999999986
No 312
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=92.79 E-value=0.091 Score=55.58 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|+|+|-||+||||+|-.+..
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~ 22 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSH 22 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999988876
No 313
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.77 E-value=0.14 Score=51.74 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 167 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 167 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++++.+.....+..+|||.|.+|+||+||.-.+-.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHH
Confidence 45567777766555688999999999999999988766
No 314
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.76 E-value=0.079 Score=52.84 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+|+|+|..|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999983
No 315
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.72 E-value=0.087 Score=51.67 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37889999999999999999873
No 316
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.72 E-value=0.24 Score=55.11 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=33.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCChhhHH
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRISAWD 233 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~~~~~ 233 (798)
++.+|.++|..|+||||.|.++... .+.. -+++++|=-|......++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~--L~~~----g~kV~lV~~D~~R~aa~e 140 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARY--FKKK----GLKVGLVAADTYRPAAYD 140 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--HHHc----CCeEEEecCCCCCHHHHH
Confidence 4789999999999999999999873 3221 126677766665553333
No 317
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.71 E-value=0.087 Score=47.13 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEecCCCChHHHHHHHHhccc
Q 048418 185 VAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~~ 206 (798)
|.|+|..|+|||||.+.+.+.+
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 318
>PRK14974 cell division protein FtsY; Provisional
Probab=92.66 E-value=0.28 Score=52.55 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=33.5
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCCh---hhHHHHhh
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRI---SAWDVIRK 237 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~---~~~~~l~~ 237 (798)
+..+|.++|++|+||||++.++... .+.. -+++.++=-|.+.. ++|.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~--l~~~----g~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY--LKKN----GFSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHHc----CCeEEEecCCcCcHHHHHHHHHHHH
Confidence 4789999999999999988887762 2211 12556665566654 45554443
No 319
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.65 E-value=0.15 Score=55.63 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=37.4
Q ss_pred CCceeecHhHHHHHHHHHhcC------------CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~------------~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|.+..++.+...+... +...+-|-++|+.|+||||||+.+..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999888777431 11246789999999999999999988
No 320
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.61 E-value=0.088 Score=55.87 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|-+.|-|||||||+|-+..-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 6788999999999999977655
No 321
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.61 E-value=0.084 Score=51.20 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 322
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.61 E-value=0.15 Score=54.10 Aligned_cols=47 Identities=15% Similarity=0.370 Sum_probs=41.6
Q ss_pred CCceeecHhHHHHHHHHHhcC----CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG----PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~----~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+++|.++..+++++.+... +.+-+|+-.+|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999753 45679999999999999999999987
No 323
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.60 E-value=0.11 Score=48.86 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..||=|.|..|.||||||+++...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358889999999999999999983
No 324
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.59 E-value=0.082 Score=49.87 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=18.8
Q ss_pred EEEecCCCChHHHHHHHHhc
Q 048418 185 VAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~ 204 (798)
|.++|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999987
No 325
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.59 E-value=0.082 Score=51.22 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.|-|+|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999994
No 326
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.57 E-value=0.41 Score=56.45 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-+||+++|..|+||||.+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 47999999999999999888875
No 327
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.23 Score=55.58 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=40.6
Q ss_pred CCCCCceeecHhHHHHHHHHHhc---CC-------CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 155 SSKNRDMVGLDDRMEELLDLLIE---GP-------PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 155 ~~~~~~~vG~~~~~~~i~~~L~~---~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...-.++-|.+....++.+++.. ++ ...+=|-++|++|.|||.||+++.++
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge 246 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE 246 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh
Confidence 44556788999999999888753 11 24566789999999999999999994
No 328
>PRK13975 thymidylate kinase; Provisional
Probab=92.52 E-value=0.093 Score=51.88 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999983
No 329
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.51 E-value=0.09 Score=50.79 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...|.|+|+.|.||||+|+.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999873
No 330
>PRK14530 adenylate kinase; Provisional
Probab=92.49 E-value=0.086 Score=53.04 Aligned_cols=21 Identities=14% Similarity=0.174 Sum_probs=19.6
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|.|+|++|+||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999977
No 331
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.48 E-value=0.41 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.9
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-.+|+|+|.+|+||||++.++..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999988764
No 332
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.47 E-value=0.094 Score=48.54 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=19.5
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|.|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999998
No 333
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=92.38 E-value=0.11 Score=54.27 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.4
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
||+|.|-||+||||+|-.+..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~ 22 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSV 22 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 688899999999998877766
No 334
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.35 E-value=0.1 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|+|..|.|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58999999999999999999984
No 335
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.33 E-value=0.19 Score=53.63 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 169 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 169 ~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++++.+.....+..+|+|.|.+|+|||||+..+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 455665544345688999999999999999998766
No 336
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.25 E-value=0.09 Score=49.77 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=20.2
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
||+|+|..|+|||||+.++...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 337
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=92.25 E-value=0.2 Score=50.29 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-|.|+|.+|+|||||+..+..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 56889999999999999999986
No 338
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.22 E-value=0.12 Score=51.77 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++++|+++|..|+|||||.+++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999998773
No 339
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.20 E-value=0.13 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHHh
Q 048418 182 LSVVAILDSIGLDKTAFAAEAY 203 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~ 203 (798)
-.+++|+|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999999986
No 340
>PLN02348 phosphoribulokinase
Probab=92.15 E-value=0.22 Score=53.84 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 179 PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 179 ~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++.-+|||.|..|.||||+|+.+.+
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999988
No 341
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.15 E-value=0.11 Score=52.98 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|+.|.|||||.|.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999998
No 342
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=0.28 Score=53.93 Aligned_cols=53 Identities=28% Similarity=0.233 Sum_probs=37.8
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccce-----------------------------EEEEEEECCCChhh
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW-----------------------------RYLIVFDNVWRISA 231 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-----------------------------r~LivlDdvw~~~~ 231 (798)
++..+-+.|.+|+|||+||..+..+ ..|+.+-- --.||+||+-.-.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD 612 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc
Confidence 4666778899999999999999874 34442211 45789999977666
Q ss_pred HHHHhh
Q 048418 232 WDVIRK 237 (798)
Q Consensus 232 ~~~l~~ 237 (798)
|-.++.
T Consensus 613 ~vpIGP 618 (744)
T KOG0741|consen 613 YVPIGP 618 (744)
T ss_pred ccccCc
Confidence 655543
No 343
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.08 E-value=0.4 Score=49.95 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.1
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+.++|.++|.+|+||||++.++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999999888876
No 344
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.07 E-value=0.33 Score=54.85 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=34.6
Q ss_pred CCceeecHhHHHHHHHHHh---c-----CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLI---E-----GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~---~-----~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.++.|.+..++.+.+... . +-...+-|-++|++|.|||.+|+.+.+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4578888877766654321 1 1124567889999999999999999884
No 345
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.06 E-value=0.25 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+..+|.|+|..|.|||||+..+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999999988
No 346
>PRK13948 shikimate kinase; Provisional
Probab=92.03 E-value=0.12 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
....|.++||.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999987
No 347
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.03 E-value=0.12 Score=51.60 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.++||+|..|.||||||+.+..
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 348
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.02 E-value=0.12 Score=50.99 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+||+.|+.|+||||.|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 349
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.01 E-value=0.091 Score=50.20 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.8
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|.|+|..|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999883
No 350
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.98 E-value=0.13 Score=50.76 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999884
No 351
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.98 E-value=0.17 Score=53.74 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 169 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 169 ~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++++-+........+|+|+|.+|+|||||+..+...
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3344444434456899999999999999999998763
No 352
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.97 E-value=0.15 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.3
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|-+.|.+|+||||+|+++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred eEEEecCCCCCchHHHHHHHH
Confidence 456789999999999999877
No 353
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.88 E-value=0.21 Score=53.58 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=36.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-..+||-+..+..++-.+.++. ..-+.|.|..|+|||||++.+..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999988876666543 44567999999999999999975
No 354
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.82 E-value=0.11 Score=48.87 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
||.|+|.+|.||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 355
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.76 E-value=0.015 Score=55.83 Aligned_cols=61 Identities=20% Similarity=0.371 Sum_probs=28.1
Q ss_pred CccccEEEeecCCCCCccee--cCCcccccceeeEeeCCCCCCC-CccCCCCCCCCEEEEecCc
Q 048418 664 FPNLKVLHLKSMLWLEEWTM--GTGAMPKLEFLIINPCAYLKKM-PEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 664 ~~~L~~L~L~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~ 724 (798)
+++++.|.+.+|..+..|.- --+-.|+|+.|+|++|+.+++- -.++..+++|+.|.|.+-+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 44444444444444443311 1123455666666666554421 1234455556666555543
No 356
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.75 E-value=0.17 Score=54.32 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++++.+.--. +-..+.|+|..|+|||||++.+.+
T Consensus 120 ~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~ 155 (380)
T PRK12608 120 SMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA 155 (380)
T ss_pred hHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 345777775321 124569999999999999999877
No 357
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=0.27 Score=48.60 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.1
Q ss_pred EEEEEecCCCChHHHHHHHHhcccc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSSNY 207 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~~~ 207 (798)
-|-+|.|+.|.||+|||..+..++.
T Consensus 31 EvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 31 EVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999988763
No 358
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=91.72 E-value=0.28 Score=48.21 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=32.5
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|-+..+..+.-...+. .=+-++|.+|+|||++|+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHH
Confidence 357889888887776666543 4678999999999999999976
No 359
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.70 E-value=0.14 Score=53.73 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.++|+|+|.+|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999998773
No 360
>PHA02624 large T antigen; Provisional
Probab=91.69 E-value=0.33 Score=55.13 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc-----ccc-ccccccce------EEEEEEECC
Q 048418 166 DRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN-----YVK-HYFDCHAW------RYLIVFDNV 226 (798)
Q Consensus 166 ~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~-----~~~-~~F~~~~w------r~LivlDdv 226 (798)
....++.+.+..+-++-+++.++|..|.||||+|+.+.+-- .+. .......| .++.+||||
T Consensus 415 ~~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~pl~D~~~~l~dD~ 487 (647)
T PHA02624 415 DVIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGCAIDQFMVVFEDV 487 (647)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhhhhhhceEEEeeec
Confidence 45556666666665667899999999999999999997721 111 01223445 889999998
No 361
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=91.67 E-value=0.14 Score=53.22 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..|-|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 45789999999999999999873
No 362
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.28 Score=55.87 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=32.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.+++-....+++..+....+--...-|-|.|..|+|||+||+++++.
T Consensus 407 e~d~i~~~s~kke~~n~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~ 454 (952)
T KOG0735|consen 407 EHDFIQVPSYKKENANQELSPVFRHGNILLNGPKGSGKTNLVKALFDY 454 (952)
T ss_pred CCceeecchhhhhhhhhhcccccccccEEEeCCCCCCHhHHHHHHHHH
Confidence 344444444444444444433334567889999999999999999984
No 363
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.59 E-value=0.17 Score=54.27 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=38.4
Q ss_pred CCCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+-..+||-++.+..++..+.++. +.-|-|.|..|+||||+|+.+++
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~--~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPK--IGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCC--CCeEEEEcCCCCCHHHHHHHHHH
Confidence 345789999998888887776653 55566999999999999999976
No 364
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.56 E-value=0.15 Score=46.99 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.|-++|..|.|||||++.+...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999885
No 365
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.54 E-value=0.15 Score=48.37 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.|+++|.+|+|||||++.+.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 366
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.53 E-value=0.14 Score=49.66 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|+|..|.||||+++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999983
No 367
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.51 E-value=0.14 Score=45.60 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=19.6
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 368
>PRK13946 shikimate kinase; Provisional
Probab=91.50 E-value=0.13 Score=50.25 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+.|.++|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999998
No 369
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=0.3 Score=48.43 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=37.2
Q ss_pred CCCceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...++-|.+-.+++|.+...-+ -..++=|-++|++|.|||.|||+|.|+
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 3456778888888887765321 134666789999999999999999995
No 370
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.48 E-value=0.21 Score=51.25 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++..+....++..||||.|.+|+||+||.-.+-.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHH
Confidence 3567777766666789999999999999999888765
No 371
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.43 E-value=0.13 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=20.5
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+|.|-|.+|.||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6889999999999999999885
No 372
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.42 E-value=0.13 Score=49.25 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.2
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|.|.|..|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 678999999999999999984
No 373
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.41 E-value=0.15 Score=51.11 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999983
No 374
>PHA02774 E1; Provisional
Probab=91.40 E-value=0.36 Score=54.60 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc--cc------cccccccce--EEEEEEECC
Q 048418 169 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN--YV------KHYFDCHAW--RYLIVFDNV 226 (798)
Q Consensus 169 ~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~--~~------~~~F~~~~w--r~LivlDdv 226 (798)
..+..+| .+.++-.-+.|+|++|.|||.+|..+.+-- ++ +.+|-...- ..++||||+
T Consensus 422 ~~lk~~l-~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 422 TALKDFL-KGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHFWLQPLADAKIALLDDA 488 (613)
T ss_pred HHHHHHH-hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccccccchhccCCEEEEecC
Confidence 3344444 333445689999999999999999987631 11 233311111 557999999
No 375
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.40 E-value=1.1 Score=53.80 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=23.4
Q ss_pred cCChHHHHHHHHHHHHHhHHHHHHHHhHh
Q 048418 65 IDNPDLGTVMDEINCFTYECEKVIDTFVN 93 (798)
Q Consensus 65 ~~~~~~~~wl~~l~~~~~~~ed~~d~~~~ 93 (798)
..++.+..+-++++.+-.++.+.++++..
T Consensus 143 ~aS~~L~~ir~~~~~~~~~i~~~l~~~~~ 171 (771)
T TIGR01069 143 GASEELDAIRESLKALEEEVVKRLHKIIR 171 (771)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888998888888888888764
No 376
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.39 E-value=0.37 Score=43.70 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=58.8
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcc-cccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
+.+|+.+.+.... ..+....|..++.|+.+.+.++ +..++. .+.+++.|+++.+.. .+..++...|..+++|
T Consensus 11 ~~~l~~i~~~~~~-----~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 11 CSNLESITFPNTI-----KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp -TT--EEEETST-------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCCEEEECCCe-----eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 5678887765322 2456677889989999999875 665443 477787899999976 6777777776889999
Q ss_pred cEeeccccccccchh-hhcccccCceeccCC
Q 048418 496 YTLDMPFSYIDHTAD-EFWKMNKLKHLNFGS 525 (798)
Q Consensus 496 ~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~ 525 (798)
+.+++..+ +..++. .+.+. +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 99999765 556643 35555 777775554
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.37 E-value=0.17 Score=54.03 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+|+++|.+|+||||++..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999999987
No 378
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.37 E-value=0.14 Score=49.05 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.5
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999973
No 379
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=91.36 E-value=0.15 Score=53.12 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|+|+|.+|+|||||+..+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~ 23 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD 23 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999988
No 380
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=91.36 E-value=0.27 Score=46.49 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc
Q 048418 166 DRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 166 ~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 206 (798)
+..+++.++|.. +++.++|..|||||||...+..+.
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 345667777743 688999999999999999999863
No 381
>PRK14527 adenylate kinase; Provisional
Probab=91.31 E-value=0.16 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+|.|+|.+|.||||+|+.+.+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999863
No 382
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.31 E-value=0.15 Score=51.34 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999883
No 383
>PRK04182 cytidylate kinase; Provisional
Probab=91.31 E-value=0.15 Score=49.50 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.4
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+|.|.|+.|.||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 384
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.30 E-value=0.16 Score=49.37 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 385
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=91.30 E-value=0.17 Score=53.41 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=18.1
Q ss_pred EEEecCCCChHHHHHHHHhc
Q 048418 185 VAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~ 204 (798)
|+|.|-|||||||+|-.+..
T Consensus 3 ia~~gKGGVGKTTta~nLA~ 22 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISI 22 (290)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999888766
No 386
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.27 E-value=0.13 Score=50.05 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|+|.|+.|+||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 387
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.26 E-value=0.14 Score=48.35 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|++|+|..|.|||||..++-.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 57999999999999999999866
No 388
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.22 E-value=0.34 Score=58.35 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=37.8
Q ss_pred CCCCceeecHhHHHHHHHHHhc-----------CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-.++.|.+..++++.+.+.- +-...+-|-++|.+|.|||++|+++.+.
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3445788999988888776642 1123455788999999999999999984
No 389
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=91.22 E-value=0.37 Score=46.21 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=22.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcccc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNY 207 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~ 207 (798)
-.++-++|..|.||||+.|.+|...+
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45788999999999999999998643
No 390
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.22 E-value=0.21 Score=60.06 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=38.7
Q ss_pred CCCCceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-+++.|.+..+++|.+++... -...+-|.++|.+|+||||||+.+.+.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 34456889999999998876421 123466889999999999999999884
No 391
>PRK10867 signal recognition particle protein; Provisional
Probab=91.21 E-value=0.48 Score=52.59 Aligned_cols=50 Identities=22% Similarity=0.252 Sum_probs=33.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCChhhHHHH
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRISAWDVI 235 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~~~~~~l 235 (798)
...+|.++|.+|+||||.|.++... ...... .++++|==|......++++
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~--l~~~~G---~kV~lV~~D~~R~aa~eQL 148 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY--LKKKKK---KKVLLVAADVYRPAAIEQL 148 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH--HHHhcC---CcEEEEEccccchHHHHHH
Confidence 4789999999999999987777652 211111 1566666666666444444
No 392
>PLN02200 adenylate kinase family protein
Probab=91.20 E-value=0.17 Score=51.55 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999977
No 393
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.17 E-value=0.16 Score=48.87 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|.|.|..|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 394
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.17 E-value=0.18 Score=47.89 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|+|+|..|+|||||+..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 395
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.16 E-value=0.17 Score=48.95 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999999987
No 396
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.15 E-value=0.17 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|+|..|.|||||++.+..-
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999883
No 397
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.15 E-value=0.18 Score=50.66 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.. .+++|+|..|.|||||++.+..-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 35 89999999999999999999873
No 398
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.11 E-value=0.17 Score=48.37 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhccc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~ 206 (798)
-.++.|.|+.|+||+||+++++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999999953
No 399
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.08 E-value=0.16 Score=50.17 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=20.3
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999883
No 400
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.01 E-value=0.27 Score=54.30 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=34.8
Q ss_pred CCceeecHhHHHHHHHHHhc-------C-----C--CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIE-------G-----P--PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~-------~-----~--~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..++|.+..++.+...+.. . + ..-+-|-++|..|+||||+|+.+..
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 34689999998877554421 1 0 1235688999999999999999986
No 401
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=90.99 E-value=0.71 Score=49.70 Aligned_cols=44 Identities=11% Similarity=-0.022 Sum_probs=31.6
Q ss_pred ceee-cHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 160 DMVG-LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 160 ~~vG-~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++| -+..++.+.+.+..+. -....-++|..|+||||+|+.+.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~ 50 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAK 50 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 4566 5556666777665442 356678999999999999988744
No 402
>PLN02796 D-glycerate 3-kinase
Probab=90.98 E-value=0.19 Score=53.51 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=30.7
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCC
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVW 227 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw 227 (798)
+.-+|||.|..|.||||||+.+... +... ... ...|-+||..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l--L~~~-g~~--~g~IsiDdfY 140 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL--FNAT-GRR--AASLSIDDFY 140 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH--hccc-CCc--eeEEEECCcc
Confidence 5789999999999999999999983 3221 111 2356788875
No 403
>PRK13768 GTPase; Provisional
Probab=90.97 E-value=0.18 Score=52.15 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++.|.|.||+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 36889999999999999988876
No 404
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.97 E-value=0.17 Score=50.82 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999983
No 405
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.95 E-value=0.13 Score=28.62 Aligned_cols=15 Identities=47% Similarity=0.436 Sum_probs=5.3
Q ss_pred ccceEEecCCCcccc
Q 048418 470 LLRYLKLNIPSLKSL 484 (798)
Q Consensus 470 ~Lr~L~L~~~~i~~l 484 (798)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 406
>PRK13695 putative NTPase; Provisional
Probab=90.94 E-value=0.16 Score=49.15 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.|+|.|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 407
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=90.90 E-value=0.17 Score=43.05 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.0
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999987
No 408
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.89 E-value=0.2 Score=48.98 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.++|.|+|+.|+|||||++.+.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 367899999999999999999987
No 409
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=90.87 E-value=0.16 Score=56.03 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-++.|+|+|..|.||||||+++.+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999999987
No 410
>COG1084 Predicted GTPase [General function prediction only]
Probab=90.82 E-value=2 Score=44.87 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=25.1
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhcc-cccc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYSS-NYVK 209 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~~-~~~~ 209 (798)
.+.+.|.|.|++-||||||++.|-.- ++|.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA 196 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVA 196 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccC
Confidence 45889999999999999999999763 5554
No 411
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.82 E-value=0.17 Score=47.55 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|++.|.+|+||||+++.+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999876
No 412
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.82 E-value=0.34 Score=56.04 Aligned_cols=48 Identities=15% Similarity=0.031 Sum_probs=33.7
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+..+.|.+-.+.+.++......+-.+|.|+|+.|.||||+|+.+...
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~ 415 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVK 415 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHH
Confidence 344555555555444444333445668999999999999999999983
No 413
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=90.77 E-value=0.18 Score=51.20 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|+.|.|||||.|.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999998
No 414
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.75 E-value=0.17 Score=48.71 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..|.|+|+.|.||||+|+.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999988
No 415
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=90.74 E-value=0.18 Score=52.85 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.6
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|+|.|-|||||||+|-.+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999999887766
No 416
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=90.71 E-value=0.39 Score=45.55 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=30.2
Q ss_pred ecHhHHHHHHHHHhcC-CCCeEEEEEecCCCChHHHHHHHHhccc
Q 048418 163 GLDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 163 G~~~~~~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~~~ 206 (798)
|.+.-.+.+.+++... ......|+++|++|+||+||...+..+.
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4555555565554321 1234568899999999999999998753
No 417
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.70 E-value=0.31 Score=49.06 Aligned_cols=23 Identities=9% Similarity=-0.127 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-+++.|.|..|.||||+.+.+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999876
No 418
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.67 E-value=0.2 Score=48.54 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999999863
No 419
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=90.67 E-value=0.18 Score=47.89 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-|.++||.|+||||+.+++.+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH
Confidence 467899999999999999987
No 420
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.66 E-value=0.19 Score=51.26 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999983
No 421
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.63 E-value=0.19 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 422
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.62 E-value=0.2 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|+|..|.|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999983
No 423
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.61 E-value=0.2 Score=50.31 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999883
No 424
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.61 E-value=0.17 Score=28.18 Aligned_cols=15 Identities=33% Similarity=0.394 Sum_probs=5.7
Q ss_pred CCcEeeccccccccc
Q 048418 494 NLYTLDMPFSYIDHT 508 (798)
Q Consensus 494 ~L~~L~L~~~~l~~l 508 (798)
+|+.|++++|.+..+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 444555555544444
No 425
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=90.61 E-value=0.19 Score=49.07 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++|.|+|+.|+|||||++.+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~ 24 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ 24 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999988
No 426
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.60 E-value=0.3 Score=56.80 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=40.8
Q ss_pred CCCCceeecHhHHHHHHHHHhcCC---CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEGP---PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~~---~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-++++|-+..++++..++.... ...+++.++|..|+||||+++.+.+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345679999999999999987532 23468999999999999999999874
No 427
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=90.59 E-value=0.2 Score=52.19 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++|+|.|-||+||||+|..+..
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~ 24 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAA 24 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999887
No 428
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.59 E-value=0.19 Score=50.22 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999984
No 429
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=90.58 E-value=0.19 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.077 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...|+|+|.+|+|||||++.+.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 456899999999999999999884
No 430
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.57 E-value=0.21 Score=49.42 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999984
No 431
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=0.27 Score=57.63 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=34.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-+.++||+++.+++++.|.-...+-. -.+|-+|||||++|.-+..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHH
Confidence 35689999999999999976532222 2489999999998655443
No 432
>PRK08356 hypothetical protein; Provisional
Probab=90.48 E-value=0.22 Score=49.28 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHh
Q 048418 183 SVVAILDSIGLDKTAFAAEAY 203 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~ 203 (798)
.+|+|.|+.|+||||+|+.+-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999993
No 433
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=90.48 E-value=0.14 Score=52.26 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.8
Q ss_pred EecCCCChHHHHHHHHhcc
Q 048418 187 ILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 187 i~G~gGiGKTtLa~~v~~~ 205 (798)
|+|++|+||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999999883
No 434
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.46 E-value=0.86 Score=48.91 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-..-+-+.|+.|+||||+|+.+..
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHH
Confidence 356688999999999999987654
No 435
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.46 E-value=0.21 Score=50.40 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999983
No 436
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=90.42 E-value=0.21 Score=47.87 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.4
Q ss_pred EEEecCCCChHHHHHHHHhccc
Q 048418 185 VAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~~ 206 (798)
|.++|.+|+|||||++...++.
T Consensus 4 i~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987653
No 437
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=90.38 E-value=0.21 Score=50.73 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|+|..|.|||||++.+..-
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 369999999999999999999983
No 438
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=90.37 E-value=0.2 Score=50.23 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 358999999999999999999883
No 439
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=90.35 E-value=0.21 Score=47.79 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-|.|+|.+|+|||||++.+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998775
No 440
>PRK15453 phosphoribulokinase; Provisional
Probab=90.34 E-value=0.23 Score=51.21 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+|+|.|..|.||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 441
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.33 E-value=0.17 Score=52.71 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.8
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|||.|..|.||||+++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 442
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=90.32 E-value=0.33 Score=55.80 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=36.4
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|.+..++.+...+.... ..-|-|+|..|+||||+|+.+++
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999988775543 33456899999999999999986
No 443
>PRK01184 hypothetical protein; Provisional
Probab=90.29 E-value=0.21 Score=48.74 Aligned_cols=19 Identities=16% Similarity=0.344 Sum_probs=17.2
Q ss_pred EEEEEecCCCChHHHHHHH
Q 048418 183 SVVAILDSIGLDKTAFAAE 201 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~ 201 (798)
.+|+|+|+.|.||||+|+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4899999999999999983
No 444
>PRK06761 hypothetical protein; Provisional
Probab=90.29 E-value=0.21 Score=51.96 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
++|.|.|.+|+||||+|+.+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999984
No 445
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.29 E-value=0.21 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|+|..|.|||||++.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999983
No 446
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=90.28 E-value=0.38 Score=47.14 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...|+|+|.+|+|||||++.+.++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 445699999999999999999874
No 447
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=90.28 E-value=0.22 Score=47.40 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.5
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 448
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=90.27 E-value=0.21 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHHHHHh
Q 048418 182 LSVVAILDSIGLDKTAFAAEAY 203 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~ 203 (798)
.+++-+.|.|||||||+|-+..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A 23 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATA 23 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHH
Confidence 5789999999999999998843
No 449
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=90.26 E-value=0.26 Score=46.60 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+|+++|..|+|||||++.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998764
No 450
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=90.25 E-value=0.19 Score=49.40 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=19.3
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|.|+|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999883
No 451
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.22 E-value=0.22 Score=51.05 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999984
No 452
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.21 E-value=0.25 Score=48.43 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 167 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 167 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+.++..... -.++.|+|..|.||||+++.+..
T Consensus 13 ~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 13 LQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh
Confidence 344444444433 35899999999999999999887
No 453
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.19 E-value=0.22 Score=51.01 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 454
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.16 E-value=0.23 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999983
No 455
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.15 E-value=0.23 Score=50.17 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999983
No 456
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.15 E-value=0.21 Score=50.10 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=20.7
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+++|+|..|.|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999973
No 457
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=90.15 E-value=0.23 Score=50.44 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 458
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=90.13 E-value=0.41 Score=46.81 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=18.7
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
|+.|.|..|.||||+.+.|.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999873
No 459
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=90.13 E-value=0.52 Score=53.75 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-..|+|+|..|+|||||.+.+..
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g 370 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAG 370 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45799999999999999999976
No 460
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.12 E-value=0.22 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 461
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.06 E-value=0.23 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|+|||||++.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999884
No 462
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=90.05 E-value=0.23 Score=50.73 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999873
No 463
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=90.04 E-value=0.23 Score=50.18 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|+|..|.|||||++.+...
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999883
No 464
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=90.01 E-value=0.25 Score=50.18 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.|+|+|-|||||+|.+..+.-
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsa 22 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSA 22 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEcCCCcccChhhhHHHH
Confidence 5799999999999999988765
No 465
>PTZ00088 adenylate kinase 1; Provisional
Probab=90.00 E-value=0.21 Score=50.55 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEecCCCChHHHHHHHHhc
Q 048418 185 VAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~ 204 (798)
|.|+|++|+||||+|+.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999977
No 466
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=89.99 E-value=0.43 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=21.3
Q ss_pred CCeEEEEEe-cCCCChHHHHHHHHhcc
Q 048418 180 PQLSVVAIL-DSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 180 ~~~~vi~i~-G~gGiGKTtLa~~v~~~ 205 (798)
...+||+|. .-||+||||+|-.+..-
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~ 130 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQD 130 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 357899997 66999999999888763
No 467
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.94 E-value=0.29 Score=47.93 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=23.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcccccc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVK 209 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~ 209 (798)
=.|+.|+|+.|.|||||.+.+..=+.+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~~~ 55 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEEPD 55 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcCCC
Confidence 3589999999999999999998854444
No 468
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=0.61 Score=52.94 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=40.7
Q ss_pred CCCCCCCCceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 152 ASSSSKNRDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 152 ~~~~~~~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+.+.-+++-|.++-+.++-+....+ -...+=|-.+|++|.||||+|+++.|.
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 344455567777888888877665432 145788889999999999999999993
No 469
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=89.92 E-value=0.28 Score=48.52 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=22.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhccc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~ 206 (798)
=.+++++|..|+|||||.+.|..-.
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999943
No 470
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=89.92 E-value=0.24 Score=49.68 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999983
No 471
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=89.86 E-value=0.25 Score=49.52 Aligned_cols=24 Identities=21% Similarity=0.081 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999984
No 472
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=89.85 E-value=0.25 Score=50.25 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|+|..|.|||||++.+..-
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999983
No 473
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.85 E-value=0.25 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.063 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999984
No 474
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=89.85 E-value=0.37 Score=49.66 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=25.2
Q ss_pred EEEEEecCCCChHHHHHHHHhccccc--cccccccce
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSSNYV--KHYFDCHAW 217 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~w 217 (798)
..++|+|-.|+|||||+..+.++..+ ++.-+.+++
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~ 106 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVF 106 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEE
Confidence 46799999999999999998875331 122355555
No 475
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=89.85 E-value=0.94 Score=42.94 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.6
Q ss_pred EEEecCCCChHHHHHHHHhccc
Q 048418 185 VAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~~ 206 (798)
|.++|.+|+|||||+..+.++.
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999998753
No 476
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=89.80 E-value=0.36 Score=53.19 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-..++|+|..|+|||||++.+.+.
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~ 185 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG 185 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC
Confidence 467999999999999999999863
No 477
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=89.80 E-value=0.25 Score=49.26 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|+|..|.|||||++.+..-
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999983
No 478
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.75 E-value=0.27 Score=47.53 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=19.5
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++.++|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999887
No 479
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=89.74 E-value=0.25 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999983
No 480
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=89.74 E-value=0.27 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 481
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.73 E-value=0.27 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+|+|+|..|+|||||.+.|..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999987
No 482
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=89.72 E-value=0.22 Score=51.36 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=18.7
Q ss_pred EEEecCCCChHHHHHHHHhc
Q 048418 185 VAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~ 204 (798)
|.++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 483
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.71 E-value=0.24 Score=50.42 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.++|+||-.|.||||+|+.+-.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc
Confidence 46899999999999999999987
No 484
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=89.70 E-value=0.24 Score=46.42 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=19.5
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999885
No 485
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=89.69 E-value=0.27 Score=45.88 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=20.5
Q ss_pred EEEEecCCCChHHHHHHHHhccc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSSN 206 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~~ 206 (798)
-|+++|..|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 486
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.67 E-value=0.26 Score=50.19 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999883
No 487
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=89.67 E-value=0.25 Score=50.07 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999983
No 488
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=89.66 E-value=0.26 Score=51.06 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999983
No 489
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=89.65 E-value=0.26 Score=49.92 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999984
No 490
>PRK14532 adenylate kinase; Provisional
Probab=89.64 E-value=0.24 Score=48.60 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=18.6
Q ss_pred EEEecCCCChHHHHHHHHhc
Q 048418 185 VAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~ 204 (798)
|-++|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 491
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=89.61 E-value=0.25 Score=45.21 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..-|-|.|-+|+||||+|..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 34577999999999999999986
No 492
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=89.61 E-value=0.27 Score=46.63 Aligned_cols=21 Identities=10% Similarity=0.319 Sum_probs=19.4
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|.++|.+|+|||||++.+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 493
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=89.61 E-value=0.26 Score=50.17 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|+|..|.|||||++.+..-
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999984
No 494
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=89.59 E-value=0.35 Score=51.83 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=35.0
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+-..++|.+..++.+.-.+.+.. ..=+-+.|..|+||||+|+.+..
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~--~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPG--IGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccC--CCcEEEEcCCCCCHHHHHHHHHH
Confidence 34678999999887775454322 23477899999999999999865
No 495
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=89.58 E-value=0.27 Score=46.61 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=19.1
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|.|+|.+|+|||||++.+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 679999999999999998764
No 496
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=89.52 E-value=0.29 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.0
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|.|+|..|+|||||++.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
No 497
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=89.51 E-value=0.49 Score=52.13 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=35.5
Q ss_pred CCceeecHhHHHHHHHHHh-------c---CC--C----CeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLI-------E---GP--P----QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~-------~---~~--~----~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|-++.++.+...+. . .. + .-..|-++|..|+|||++|+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 5678999999888865551 1 11 1 135788999999999999999986
No 498
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=89.49 E-value=0.26 Score=48.76 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=19.8
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+++|+|..|.|||||++.++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999975
No 499
>PLN02165 adenylate isopentenyltransferase
Probab=89.49 E-value=0.25 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+|.|+|+.|+||||||..+...
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999873
No 500
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=89.48 E-value=0.73 Score=55.25 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 165 DDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 165 ~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+..+.++.+... -+++.|.|.+|.||||+++.+..
T Consensus 354 s~~Q~~Av~~i~~s---~~~~il~G~aGTGKTtll~~i~~ 390 (744)
T TIGR02768 354 SEEQYEAVRHVTGS---GDIAVVVGRAGTGKSTMLKAARE 390 (744)
T ss_pred CHHHHHHHHHHhcC---CCEEEEEecCCCCHHHHHHHHHH
Confidence 44444555555443 24778999999999999999864
Done!