Query 048418
Match_columns 798
No_of_seqs 540 out of 4453
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 16:10:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-35 5.6E-40 340.6 8.9 224 162-409 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 3.9E-30 1.3E-34 326.3 13.7 229 154-409 119-453 (1249)
3 3rgz_A Protein brassinosteroid 100.0 5.6E-30 1.9E-34 307.4 12.4 251 417-675 268-548 (768)
4 3rgz_A Protein brassinosteroid 100.0 8.3E-29 2.8E-33 297.2 15.4 274 417-701 222-550 (768)
5 1vt4_I APAF-1 related killer D 100.0 1.3E-29 4.3E-34 294.9 6.5 208 160-401 129-436 (1221)
6 1o6v_A Internalin A; bacterial 100.0 9.7E-28 3.3E-32 271.3 19.2 316 417-768 45-377 (466)
7 3t6q_A CD180 antigen; protein- 99.9 1.5E-27 5.1E-32 279.3 18.6 365 412-794 27-491 (606)
8 2z63_A TOLL-like receptor 4, v 99.9 1.4E-27 4.9E-32 277.3 17.7 108 417-528 51-161 (570)
9 3vq2_A TLR4, TOLL-like recepto 99.9 2.1E-27 7.2E-32 278.0 18.9 149 615-769 349-500 (606)
10 4ecn_A Leucine-rich repeat pro 99.9 4.7E-27 1.6E-31 280.8 17.8 334 417-763 447-826 (876)
11 3t6q_A CD180 antigen; protein- 99.9 2.3E-27 7.9E-32 277.7 14.9 205 558-769 274-503 (606)
12 3vq2_A TLR4, TOLL-like recepto 99.9 2.5E-27 8.6E-32 277.3 15.0 335 417-769 55-524 (606)
13 4eco_A Uncharacterized protein 99.9 2.4E-27 8E-32 278.2 14.1 308 444-763 247-586 (636)
14 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-26 4.1E-31 266.3 19.3 332 417-769 20-471 (520)
15 2z81_A CD282 antigen, TOLL-lik 99.9 8E-27 2.7E-31 269.7 16.3 175 417-599 25-207 (549)
16 4eco_A Uncharacterized protein 99.9 4.4E-27 1.5E-31 275.9 12.8 310 439-769 199-569 (636)
17 3o6n_A APL1; leucine-rich repe 99.9 3.3E-26 1.1E-30 252.7 18.1 308 417-757 44-354 (390)
18 4ecn_A Leucine-rich repeat pro 99.9 2.3E-26 7.9E-31 274.8 17.3 310 438-769 440-809 (876)
19 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-25 4.4E-30 266.5 20.7 152 615-769 328-507 (680)
20 4fmz_A Internalin; leucine ric 99.9 8.1E-26 2.8E-30 245.3 17.3 302 417-754 43-345 (347)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-25 3.9E-30 260.6 19.5 334 417-769 51-500 (562)
22 3j0a_A TOLL-like receptor 5; m 99.9 1E-25 3.6E-30 273.1 19.8 128 417-548 23-156 (844)
23 3oja_B Anopheles plasmodium-re 99.9 7.9E-26 2.7E-30 263.6 18.0 308 417-757 50-360 (597)
24 4fmz_A Internalin; leucine ric 99.9 1.5E-25 5.1E-30 243.2 17.9 304 442-791 40-345 (347)
25 1z6t_A APAF-1, apoptotic prote 99.9 3.6E-26 1.2E-30 266.5 13.9 223 157-406 122-450 (591)
26 3v47_A TOLL-like receptor 5B a 99.9 7.9E-26 2.7E-30 255.0 15.0 326 417-759 29-412 (455)
27 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-25 6E-30 256.7 16.3 308 446-769 21-447 (520)
28 3v47_A TOLL-like receptor 5B a 99.9 3.6E-26 1.2E-30 257.7 10.3 316 446-769 30-398 (455)
29 1o6v_A Internalin A; bacterial 99.9 1.2E-24 4E-29 246.0 21.5 306 417-757 67-390 (466)
30 2id5_A Lingo-1, leucine rich r 99.9 6.8E-25 2.3E-29 248.9 19.4 297 416-724 30-331 (477)
31 3bz5_A Internalin-J, INLJ; leu 99.9 5.9E-25 2E-29 247.0 17.8 294 417-756 41-353 (457)
32 2z81_A CD282 antigen, TOLL-lik 99.9 8.6E-25 2.9E-29 252.6 19.2 273 446-724 26-421 (549)
33 2z63_A TOLL-like receptor 4, v 99.9 1.1E-24 3.7E-29 253.0 17.4 333 417-768 75-520 (570)
34 3j0a_A TOLL-like receptor 5; m 99.9 2.6E-24 8.9E-29 260.9 21.3 341 417-771 47-555 (844)
35 2id5_A Lingo-1, leucine rich r 99.9 2.9E-24 9.9E-29 243.7 20.3 295 446-757 32-335 (477)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-24 3.9E-29 252.2 17.2 319 417-757 75-512 (562)
37 3bz5_A Internalin-J, INLJ; leu 99.9 4.9E-24 1.7E-28 239.4 20.0 313 417-764 63-396 (457)
38 4g8a_A TOLL-like receptor 4; l 99.9 3E-24 1E-28 252.3 18.9 341 412-765 46-565 (635)
39 3o6n_A APL1; leucine-rich repe 99.9 2.4E-24 8.3E-29 237.7 15.3 299 444-772 43-348 (390)
40 1ziw_A TOLL-like receptor 3; i 99.9 9.1E-24 3.1E-28 250.6 21.0 150 617-769 382-563 (680)
41 3oja_B Anopheles plasmodium-re 99.9 4.7E-24 1.6E-28 248.6 14.4 300 444-773 49-355 (597)
42 1xku_A Decorin; proteoglycan, 99.9 1.8E-23 6.1E-28 225.2 16.0 287 446-752 31-329 (330)
43 4fcg_A Uncharacterized protein 99.9 1.1E-23 3.8E-28 226.3 13.5 232 444-723 79-311 (328)
44 2ft3_A Biglycan; proteoglycan, 99.9 3.5E-23 1.2E-27 223.1 13.1 286 447-752 34-330 (332)
45 4g8a_A TOLL-like receptor 4; l 99.9 8.6E-23 3E-27 239.9 16.6 315 446-769 52-545 (635)
46 1ogq_A PGIP-2, polygalacturona 99.9 9.2E-24 3.1E-28 225.5 7.3 247 446-753 50-302 (313)
47 4fcg_A Uncharacterized protein 99.9 2.1E-22 7E-27 216.4 13.1 235 468-755 80-314 (328)
48 1ogq_A PGIP-2, polygalacturona 99.9 1E-22 3.6E-27 217.3 8.0 152 418-597 50-206 (313)
49 1xku_A Decorin; proteoglycan, 99.9 9.9E-22 3.4E-26 211.5 15.1 259 446-723 52-329 (330)
50 2ft3_A Biglycan; proteoglycan, 99.9 9.5E-22 3.3E-26 211.9 12.7 280 419-724 34-331 (332)
51 1jl5_A Outer protein YOPM; leu 99.9 2.8E-21 9.6E-26 216.8 16.8 266 417-724 90-368 (454)
52 1jl5_A Outer protein YOPM; leu 99.9 1.6E-21 5.6E-26 218.7 13.9 309 417-765 10-382 (454)
53 1z7x_W Ribonuclease inhibitor; 99.8 1.6E-23 5.5E-28 236.4 -5.8 178 417-600 2-211 (461)
54 2z66_A Variable lymphocyte rec 99.8 5.6E-21 1.9E-25 203.3 11.2 241 449-724 10-259 (306)
55 2z80_A TOLL-like receptor 2, v 99.8 6.4E-21 2.2E-25 207.2 10.7 251 446-724 52-312 (353)
56 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-20 6E-25 216.9 14.9 255 418-724 40-295 (622)
57 3o53_A Protein LRIM1, AGAP0063 99.8 3.4E-21 1.2E-25 206.1 7.9 253 438-761 26-282 (317)
58 2z80_A TOLL-like receptor 2, v 99.8 2.1E-20 7.1E-25 203.2 14.0 276 443-757 28-316 (353)
59 3zyi_A Leucine-rich repeat-con 99.8 4.6E-20 1.6E-24 207.5 14.9 107 615-724 195-301 (452)
60 3zyj_A Leucine-rich repeat-con 99.8 7.8E-20 2.7E-24 204.9 15.3 239 449-724 46-290 (440)
61 2z66_A Variable lymphocyte rec 99.8 1.8E-20 6.2E-25 199.3 9.6 227 446-702 28-261 (306)
62 3ogk_B Coronatine-insensitive 99.8 2.5E-20 8.5E-25 217.2 11.4 340 419-768 139-540 (592)
63 1ozn_A Reticulon 4 receptor; N 99.8 3.3E-20 1.1E-24 195.2 9.9 255 449-764 14-270 (285)
64 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-22 4.9E-27 228.6 -9.9 349 417-769 27-433 (461)
65 3oja_A Leucine-rich immune mol 99.8 2.5E-20 8.5E-25 211.2 6.7 237 444-750 32-270 (487)
66 3zyi_A Leucine-rich repeat-con 99.8 1.2E-19 4E-24 204.1 11.9 223 446-700 75-301 (452)
67 3g06_A SSPH2 (leucine-rich rep 99.8 1.2E-18 4E-23 201.7 20.2 270 445-766 39-308 (622)
68 3zyj_A Leucine-rich repeat-con 99.8 1.4E-19 4.7E-24 202.9 12.0 219 446-676 64-290 (440)
69 3o53_A Protein LRIM1, AGAP0063 99.8 4.2E-21 1.4E-25 205.4 -1.7 243 417-704 33-277 (317)
70 3oja_A Leucine-rich immune mol 99.8 3.7E-20 1.3E-24 209.7 5.1 238 460-768 21-264 (487)
71 1wwl_A Monocyte differentiatio 99.8 8.6E-21 2.9E-25 202.4 -1.4 132 615-756 172-310 (312)
72 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-19 4.2E-24 190.8 6.9 248 445-723 31-284 (285)
73 3ogk_B Coronatine-insensitive 99.8 1E-18 3.5E-23 203.6 11.4 325 417-751 163-547 (592)
74 2ast_B S-phase kinase-associat 99.8 1.4E-19 4.7E-24 195.2 3.0 256 447-764 48-315 (336)
75 1wwl_A Monocyte differentiatio 99.8 4.9E-19 1.7E-23 188.8 7.0 220 448-724 65-307 (312)
76 2p1m_B Transport inhibitor res 99.7 2.6E-20 8.9E-25 217.2 -6.2 259 490-756 208-520 (594)
77 2p1m_B Transport inhibitor res 99.7 4E-19 1.4E-23 207.1 0.7 251 468-724 210-517 (594)
78 2z62_A TOLL-like receptor 4, v 99.7 1.6E-17 5.6E-22 173.7 10.8 216 452-724 13-235 (276)
79 2o6q_A Variable lymphocyte rec 99.7 4.4E-17 1.5E-21 169.8 13.1 200 446-701 16-217 (270)
80 1h6u_A Internalin H; cell adhe 99.7 3.1E-17 1.1E-21 174.3 12.1 83 443-529 38-120 (308)
81 2ast_B S-phase kinase-associat 99.7 4E-18 1.4E-22 183.7 5.2 255 419-710 48-314 (336)
82 3rfs_A Internalin B, repeat mo 99.7 1.9E-17 6.4E-22 172.8 9.7 209 443-714 38-247 (272)
83 3rfs_A Internalin B, repeat mo 99.7 7.6E-18 2.6E-22 175.8 5.9 214 445-723 18-232 (272)
84 1p9a_G Platelet glycoprotein I 99.7 5.1E-17 1.7E-21 171.0 11.3 202 442-701 6-207 (290)
85 2z62_A TOLL-like receptor 4, v 99.7 5.9E-17 2E-21 169.4 11.4 125 446-572 28-159 (276)
86 2ca6_A RAN GTPase-activating p 99.7 9.1E-19 3.1E-23 192.6 -3.7 266 452-758 15-319 (386)
87 1h6u_A Internalin H; cell adhe 99.7 1.3E-16 4.4E-21 169.6 11.6 205 452-701 25-229 (308)
88 2ca6_A RAN GTPase-activating p 99.7 8.3E-18 2.8E-22 185.0 0.6 196 439-653 25-257 (386)
89 1p9a_G Platelet glycoprotein I 99.7 2.8E-16 9.4E-21 165.4 11.3 200 464-724 5-206 (290)
90 2o6q_A Variable lymphocyte rec 99.6 7.2E-16 2.5E-20 160.6 13.5 197 470-724 17-216 (270)
91 2xwt_C Thyrotropin receptor; s 99.6 2.4E-16 8.3E-21 160.9 9.1 208 458-724 23-237 (239)
92 4ay9_X Follicle-stimulating ho 99.6 7.7E-16 2.6E-20 166.8 12.3 241 449-723 12-256 (350)
93 2xwt_C Thyrotropin receptor; s 99.6 3.2E-16 1.1E-20 160.0 8.4 195 446-675 31-236 (239)
94 3goz_A Leucine-rich repeat-con 99.6 1.8E-16 6.1E-21 172.7 5.1 38 617-654 168-210 (362)
95 3qfl_A MLA10; coiled-coil, (CC 99.6 1.4E-15 4.9E-20 134.4 9.1 85 3-98 1-85 (115)
96 4glp_A Monocyte differentiatio 99.6 5.6E-16 1.9E-20 164.9 7.4 83 445-528 90-181 (310)
97 3goz_A Leucine-rich repeat-con 99.6 3.5E-16 1.2E-20 170.3 5.4 242 437-701 13-296 (362)
98 3m19_A Variable lymphocyte rec 99.6 4.2E-15 1.4E-19 152.9 11.9 176 446-676 14-190 (251)
99 1h6t_A Internalin B; cell adhe 99.6 5E-15 1.7E-19 155.9 12.3 172 443-654 43-214 (291)
100 4glp_A Monocyte differentiatio 99.6 2.2E-15 7.4E-20 160.3 9.2 223 447-702 65-307 (310)
101 1m9s_A Internalin B; cell inva 99.6 1.6E-15 5.6E-20 175.1 6.1 188 445-675 20-207 (605)
102 4ay9_X Follicle-stimulating ho 99.5 1.1E-14 3.8E-19 157.6 10.7 248 462-752 3-256 (350)
103 1m9s_A Internalin B; cell inva 99.5 1.2E-14 4E-19 167.9 10.2 83 443-529 40-122 (605)
104 1h6t_A Internalin B; cell adhe 99.5 6E-15 2E-19 155.3 6.9 187 447-700 25-211 (291)
105 3cvr_A Invasion plasmid antige 99.5 1.7E-14 5.7E-19 164.9 9.5 74 447-529 60-133 (571)
106 3m19_A Variable lymphocyte rec 99.5 4.4E-14 1.5E-18 145.3 10.8 178 469-703 14-193 (251)
107 1xeu_A Internalin C; cellular 99.5 1.6E-14 5.3E-19 149.7 7.4 171 444-655 17-187 (263)
108 4ezg_A Putative uncharacterize 99.5 2.8E-14 9.4E-19 141.0 8.2 154 443-654 41-195 (197)
109 2o6s_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 141.6 8.9 180 449-690 10-190 (208)
110 4ezg_A Putative uncharacterize 99.5 5.2E-14 1.8E-18 139.0 9.6 154 464-676 39-192 (197)
111 2o6s_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 141.3 7.0 162 445-641 27-190 (208)
112 3cvr_A Invasion plasmid antige 99.4 3.5E-13 1.2E-17 153.9 12.1 175 470-724 60-241 (571)
113 1dce_A Protein (RAB geranylger 99.4 2.2E-15 7.4E-20 173.1 -6.5 81 615-700 462-544 (567)
114 1xeu_A Internalin C; cellular 99.4 2.7E-13 9.1E-18 140.4 9.5 151 442-631 37-187 (263)
115 2xot_A Amphoterin-induced prot 99.4 1.3E-13 4.5E-18 149.8 6.9 174 449-653 21-202 (361)
116 1dce_A Protein (RAB geranylger 99.4 3.6E-15 1.2E-19 171.2 -7.6 120 564-695 443-566 (567)
117 2v9t_B SLIT homolog 2 protein 99.4 7.5E-13 2.6E-17 133.1 9.4 79 449-529 14-93 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 9.4E-13 3.2E-17 132.3 8.9 151 449-653 14-166 (220)
119 3e6j_A Variable lymphocyte rec 99.4 1.5E-12 5.3E-17 131.6 9.9 80 448-529 21-101 (229)
120 2ell_A Acidic leucine-rich nuc 99.3 2.2E-12 7.5E-17 123.7 8.2 128 445-598 23-157 (168)
121 3e6j_A Variable lymphocyte rec 99.3 4.2E-12 1.4E-16 128.4 10.7 130 417-572 39-169 (229)
122 2v9t_B SLIT homolog 2 protein 99.3 5.2E-12 1.8E-16 126.8 10.6 130 417-572 31-162 (220)
123 4b8c_D Glucose-repressible alc 99.3 3.4E-13 1.2E-17 159.6 2.1 109 437-548 215-324 (727)
124 2je0_A Acidic leucine-rich nuc 99.3 2.1E-12 7E-17 121.2 6.6 129 443-596 14-148 (149)
125 2v70_A SLIT-2, SLIT homolog 2 99.3 7E-12 2.4E-16 125.9 8.4 129 446-598 32-163 (220)
126 2ell_A Acidic leucine-rich nuc 99.2 1.2E-11 4.1E-16 118.5 8.4 132 417-572 23-157 (168)
127 2xot_A Amphoterin-induced prot 99.2 5.6E-12 1.9E-16 136.9 6.3 174 471-677 20-201 (361)
128 3sb4_A Hypothetical leucine ri 99.2 2.9E-11 1E-15 129.4 11.1 281 417-719 24-327 (329)
129 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 4E-16 119.6 5.9 106 417-528 18-125 (176)
130 1ds9_A Outer arm dynein; leuci 99.2 3E-12 1E-16 126.3 1.7 149 417-594 22-180 (198)
131 4b8c_D Glucose-repressible alc 99.2 1E-12 3.4E-17 155.7 -2.3 117 456-599 211-327 (727)
132 1w8a_A SLIT protein; signaling 99.2 2.2E-11 7.4E-16 119.5 7.3 100 449-572 11-112 (192)
133 2je0_A Acidic leucine-rich nuc 99.2 9.1E-12 3.1E-16 116.7 4.4 108 417-529 16-126 (149)
134 2wfh_A SLIT homolog 2 protein 99.1 9.1E-11 3.1E-15 115.1 9.0 78 449-529 13-91 (193)
135 1a9n_A U2A', U2A'; complex (nu 99.1 5E-11 1.7E-15 115.1 6.2 127 442-573 15-151 (176)
136 2wfh_A SLIT homolog 2 protein 99.1 2.6E-10 9.1E-15 111.7 9.6 84 446-529 31-115 (193)
137 2o6r_A Variable lymphocyte rec 99.0 4.1E-10 1.4E-14 108.7 8.8 80 448-529 9-89 (177)
138 1w8a_A SLIT protein; signaling 99.0 3.5E-10 1.2E-14 110.8 8.3 83 447-529 30-115 (192)
139 4fdw_A Leucine rich hypothetic 99.0 4.5E-09 1.5E-13 115.2 16.5 261 417-724 112-381 (401)
140 2o6r_A Variable lymphocyte rec 99.0 1E-09 3.4E-14 106.0 8.6 101 446-548 28-132 (177)
141 1ds9_A Outer arm dynein; leuci 98.9 4.5E-11 1.5E-15 117.8 -2.5 128 442-598 14-150 (198)
142 2r9u_A Variable lymphocyte rec 98.9 2.1E-09 7E-14 103.4 9.0 79 449-529 15-94 (174)
143 3g39_A Variable lymphocyte rec 98.9 2E-09 6.8E-14 103.1 8.8 81 447-529 10-91 (170)
144 2r9u_A Variable lymphocyte rec 98.9 2.7E-09 9.3E-14 102.6 8.9 84 446-529 33-118 (174)
145 3sb4_A Hypothetical leucine ri 98.9 3.7E-09 1.3E-13 113.0 9.6 261 417-696 48-328 (329)
146 3g39_A Variable lymphocyte rec 98.8 4.8E-09 1.7E-13 100.4 7.5 84 446-529 30-115 (170)
147 3un9_A NLR family member X1; l 98.7 7.9E-09 2.7E-13 112.1 3.7 113 417-529 71-196 (372)
148 4fs7_A Uncharacterized protein 98.6 2.1E-07 7.2E-12 101.9 14.6 117 615-747 275-393 (394)
149 4fdw_A Leucine rich hypothetic 98.6 1.5E-07 5.3E-12 102.9 12.3 220 439-675 151-380 (401)
150 3un9_A NLR family member X1; l 98.6 2.4E-09 8.2E-14 116.2 -2.2 85 445-529 71-168 (372)
151 4fs7_A Uncharacterized protein 98.6 3.1E-07 1.1E-11 100.5 14.7 296 439-768 64-390 (394)
152 2ifg_A High affinity nerve gro 98.5 9.6E-08 3.3E-12 102.7 8.2 78 451-529 13-93 (347)
153 2ifg_A High affinity nerve gro 98.5 7.3E-08 2.5E-12 103.6 6.8 88 442-529 27-116 (347)
154 4gt6_A Cell surface protein; l 98.4 3E-06 1E-10 92.6 14.8 103 615-724 264-368 (394)
155 1njg_A DNA polymerase III subu 98.3 1.1E-06 3.7E-11 88.7 9.0 98 158-256 22-167 (250)
156 2ra8_A Uncharacterized protein 98.3 1E-07 3.5E-12 102.5 1.3 160 558-724 135-318 (362)
157 2chg_A Replication factor C sm 98.3 1.3E-06 4.6E-11 86.8 8.6 97 158-256 16-143 (226)
158 1w5s_A Origin recognition comp 98.2 9.3E-07 3.2E-11 97.3 6.7 48 158-205 21-75 (412)
159 2ra8_A Uncharacterized protein 98.2 1.5E-06 5.3E-11 93.3 6.8 187 442-651 135-341 (362)
160 3e4g_A ATP synthase subunit S, 98.0 2.4E-06 8.2E-11 80.9 3.9 34 617-650 62-95 (176)
161 1io0_A Tropomodulin; LRR prote 98.0 3.8E-06 1.3E-10 81.3 5.2 119 436-573 26-162 (185)
162 2fna_A Conserved hypothetical 98.0 3.8E-06 1.3E-10 90.2 4.3 43 157-205 11-53 (357)
163 2qby_A CDC6 homolog 1, cell di 97.9 6.1E-06 2.1E-10 89.7 5.8 48 158-205 19-68 (386)
164 4gt6_A Cell surface protein; l 97.9 5.8E-05 2E-09 82.4 13.3 280 419-723 65-388 (394)
165 1io0_A Tropomodulin; LRR prote 97.9 4.4E-06 1.5E-10 80.8 3.4 112 417-529 35-164 (185)
166 2qby_B CDC6 homolog 3, cell di 97.8 1.3E-05 4.4E-10 87.1 6.2 47 159-205 20-68 (384)
167 1iqp_A RFCS; clamp loader, ext 97.8 2.2E-05 7.4E-10 83.2 7.7 97 158-256 24-151 (327)
168 1jbk_A CLPB protein; beta barr 97.8 1.9E-05 6.5E-10 76.2 5.9 46 158-205 21-66 (195)
169 2v1u_A Cell division control p 97.8 1.9E-05 6.5E-10 85.8 6.4 48 158-205 18-67 (387)
170 1sxj_B Activator 1 37 kDa subu 97.8 2.4E-05 8.1E-10 82.8 6.5 96 158-255 20-147 (323)
171 4h09_A Hypothetical leucine ri 97.7 0.00053 1.8E-08 74.2 16.8 141 615-769 216-359 (379)
172 1fnn_A CDC6P, cell division co 97.7 5.1E-05 1.7E-09 82.5 8.0 48 158-205 16-67 (389)
173 3rw6_A Nuclear RNA export fact 97.6 4.1E-05 1.4E-09 78.0 5.7 80 441-522 165-257 (267)
174 3e4g_A ATP synthase subunit S, 97.6 3.8E-05 1.3E-09 72.6 5.0 20 553-573 131-150 (176)
175 3h4m_A Proteasome-activating n 97.6 5.7E-05 2E-09 78.3 6.3 49 157-205 15-74 (285)
176 3ec2_A DNA replication protein 97.6 4.7E-05 1.6E-09 73.0 4.7 92 164-255 19-143 (180)
177 3n70_A Transport activator; si 97.5 8.2E-05 2.8E-09 68.6 4.8 95 160-254 2-115 (145)
178 3rw6_A Nuclear RNA export fact 97.4 2.7E-05 9.1E-10 79.4 0.9 62 466-529 167-233 (267)
179 3syl_A Protein CBBX; photosynt 97.4 0.00013 4.5E-09 76.5 5.8 96 160-255 32-179 (309)
180 1jr3_A DNA polymerase III subu 97.4 0.00033 1.1E-08 75.5 8.9 96 159-255 16-159 (373)
181 2chq_A Replication factor C sm 97.3 0.00022 7.5E-09 75.1 6.7 97 158-256 16-143 (319)
182 3eie_A Vacuolar protein sortin 97.3 0.00042 1.5E-08 73.1 8.4 49 157-205 16-74 (322)
183 2w58_A DNAI, primosome compone 97.3 0.00012 4.1E-09 71.6 3.6 39 167-205 37-77 (202)
184 3bos_A Putative DNA replicatio 97.3 0.00016 5.3E-09 72.7 4.5 45 159-205 28-75 (242)
185 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00047 1.6E-08 70.3 7.8 49 157-205 4-62 (262)
186 2qen_A Walker-type ATPase; unk 97.2 0.00023 7.9E-09 75.9 5.0 45 156-204 9-53 (350)
187 3co5_A Putative two-component 97.2 0.00013 4.3E-09 67.1 2.4 94 159-255 4-116 (143)
188 4h09_A Hypothetical leucine ri 97.2 0.0089 3E-07 64.4 17.2 291 440-769 40-336 (379)
189 3u61_B DNA polymerase accessor 97.1 0.00084 2.9E-08 70.9 7.8 97 157-256 24-147 (324)
190 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0017 5.8E-08 68.4 9.7 49 157-205 10-68 (322)
191 1sxj_D Activator 1 41 kDa subu 97.0 0.00037 1.3E-08 74.5 4.5 47 157-205 35-81 (353)
192 3pfi_A Holliday junction ATP-d 97.0 0.00062 2.1E-08 72.4 6.1 79 158-238 28-129 (338)
193 1hqc_A RUVB; extended AAA-ATPa 97.0 0.00032 1.1E-08 74.0 3.7 47 158-204 11-60 (324)
194 2p65_A Hypothetical protein PF 97.0 0.00048 1.6E-08 65.9 4.5 46 158-205 21-66 (187)
195 3d8b_A Fidgetin-like protein 1 97.0 0.00077 2.6E-08 72.2 6.4 48 158-205 83-140 (357)
196 1d2n_A N-ethylmaleimide-sensit 97.0 0.0012 3.9E-08 67.9 7.4 47 159-205 33-87 (272)
197 3pvs_A Replication-associated 96.9 0.00089 3.1E-08 73.8 6.1 46 158-205 25-73 (447)
198 2qp9_X Vacuolar protein sortin 96.8 0.0015 5.2E-08 69.8 7.2 48 158-205 50-107 (355)
199 2z4s_A Chromosomal replication 96.8 0.001 3.5E-08 73.3 5.5 93 160-255 106-237 (440)
200 2zan_A Vacuolar protein sortin 96.7 0.0027 9.3E-08 70.0 8.7 50 156-205 131-190 (444)
201 1l8q_A Chromosomal replication 96.7 0.0014 4.9E-08 69.1 5.9 38 168-205 23-60 (324)
202 3vfd_A Spastin; ATPase, microt 96.7 0.0022 7.4E-08 69.6 7.4 49 157-205 113-171 (389)
203 3uk6_A RUVB-like 2; hexameric 96.7 0.0038 1.3E-07 67.0 9.2 48 158-205 43-93 (368)
204 1sxj_E Activator 1 40 kDa subu 96.6 0.0024 8.2E-08 68.2 6.5 44 159-204 14-58 (354)
205 2r62_A Cell division protease 96.5 0.0013 4.5E-08 67.2 3.8 48 158-205 10-67 (268)
206 1ojl_A Transcriptional regulat 96.4 0.003 1E-07 65.8 6.1 46 159-204 2-47 (304)
207 3b9p_A CG5977-PA, isoform A; A 96.4 0.0023 8E-08 66.4 5.0 48 158-205 20-77 (297)
208 4fcw_A Chaperone protein CLPB; 96.3 0.0062 2.1E-07 63.6 7.4 47 159-205 17-70 (311)
209 1r6b_X CLPA protein; AAA+, N-t 96.2 0.009 3.1E-07 70.8 9.0 45 158-204 185-229 (758)
210 1sxj_C Activator 1 40 kDa subu 96.2 0.0065 2.2E-07 64.5 7.0 96 158-255 24-150 (340)
211 3hu3_A Transitional endoplasmi 96.0 0.0059 2E-07 67.9 6.1 48 158-205 203-261 (489)
212 2ce7_A Cell division protein F 96.0 0.0089 3.1E-07 66.0 7.5 48 158-205 15-72 (476)
213 2qgz_A Helicase loader, putati 96.0 0.0028 9.7E-08 66.2 2.9 41 165-205 134-175 (308)
214 3pxi_A Negative regulator of g 95.9 0.0074 2.5E-07 71.5 6.3 46 158-205 179-224 (758)
215 3cf0_A Transitional endoplasmi 95.8 0.0068 2.3E-07 63.1 5.1 48 158-205 14-72 (301)
216 2r44_A Uncharacterized protein 95.8 0.011 3.9E-07 62.3 6.9 42 159-204 27-68 (331)
217 3pxg_A Negative regulator of g 95.8 0.0067 2.3E-07 67.4 5.2 46 158-205 179-224 (468)
218 3rfe_A Platelet glycoprotein I 95.8 0.01 3.5E-07 53.1 5.3 55 449-505 11-67 (130)
219 3te6_A Regulatory protein SIR3 95.7 0.0042 1.4E-07 64.7 3.1 46 160-205 21-68 (318)
220 4b4t_L 26S protease subunit RP 95.7 0.013 4.5E-07 63.6 6.7 50 156-205 178-238 (437)
221 4b4t_K 26S protease regulatory 95.6 0.012 4.1E-07 63.8 6.3 50 156-205 169-229 (428)
222 4b4t_M 26S protease regulatory 95.6 0.012 4E-07 64.0 5.8 51 155-205 177-238 (434)
223 4b4t_H 26S protease regulatory 95.5 0.012 4.1E-07 63.9 5.8 50 156-205 206-266 (467)
224 4b4t_J 26S protease regulatory 95.5 0.012 4.2E-07 62.9 5.6 50 156-205 145-205 (405)
225 3c8u_A Fructokinase; YP_612366 95.5 0.011 3.7E-07 57.8 4.7 38 167-204 7-44 (208)
226 1tue_A Replication protein E1; 95.5 0.0046 1.6E-07 59.4 2.0 66 168-235 45-120 (212)
227 1sxj_A Activator 1 95 kDa subu 95.3 0.014 4.6E-07 65.8 5.6 49 157-205 37-100 (516)
228 1in4_A RUVB, holliday junction 95.3 0.0087 3E-07 63.3 3.8 47 159-205 25-74 (334)
229 1rz3_A Hypothetical protein rb 95.3 0.018 6E-07 55.9 5.5 41 164-204 3-44 (201)
230 1lv7_A FTSH; alpha/beta domain 95.2 0.014 4.8E-07 59.1 4.6 48 158-205 11-68 (257)
231 2bjv_A PSP operon transcriptio 95.1 0.01 3.5E-07 60.4 3.3 47 159-205 6-52 (265)
232 1u0j_A DNA replication protein 95.0 0.033 1.1E-06 56.1 6.7 59 171-229 93-160 (267)
233 3pxi_A Negative regulator of g 95.0 0.02 6.9E-07 67.8 6.0 47 159-205 491-544 (758)
234 1ofh_A ATP-dependent HSL prote 95.0 0.011 3.8E-07 61.5 3.3 47 159-205 15-73 (310)
235 1odf_A YGR205W, hypothetical 3 94.9 0.025 8.5E-07 58.3 5.6 27 178-204 27-53 (290)
236 3lw7_A Adenylate kinase relate 94.7 0.014 4.9E-07 54.7 3.0 20 183-202 2-21 (179)
237 4b4t_I 26S protease regulatory 94.7 0.028 9.7E-07 60.4 5.4 50 156-205 179-239 (437)
238 2ga8_A Hypothetical 39.9 kDa p 94.7 0.028 9.7E-07 58.9 5.3 44 161-204 1-46 (359)
239 3m6a_A ATP-dependent protease 94.6 0.031 1.1E-06 63.1 5.9 46 159-204 81-130 (543)
240 2x8a_A Nuclear valosin-contain 94.6 0.027 9.4E-07 57.5 4.9 48 157-205 8-67 (274)
241 1zp6_A Hypothetical protein AT 94.5 0.017 5.9E-07 55.3 3.2 24 182-205 9-32 (191)
242 3hws_A ATP-dependent CLP prote 94.5 0.025 8.6E-07 60.5 4.6 45 160-204 16-73 (363)
243 1qvr_A CLPB protein; coiled co 94.5 0.019 6.5E-07 68.9 3.9 46 158-205 169-214 (854)
244 2gno_A DNA polymerase III, gam 94.4 0.055 1.9E-06 56.1 6.9 90 164-255 2-122 (305)
245 2c9o_A RUVB-like 1; hexameric 94.4 0.036 1.2E-06 61.3 5.8 48 158-205 36-86 (456)
246 3kb2_A SPBC2 prophage-derived 94.4 0.018 6E-07 54.1 2.8 22 183-204 2-23 (173)
247 1ixz_A ATP-dependent metallopr 94.4 0.025 8.7E-07 57.0 4.2 47 158-205 15-72 (254)
248 1r6b_X CLPA protein; AAA+, N-t 94.3 0.049 1.7E-06 64.4 7.0 47 158-204 457-510 (758)
249 3vaa_A Shikimate kinase, SK; s 94.3 0.02 6.8E-07 55.4 2.9 23 182-204 25-47 (199)
250 1a5t_A Delta prime, HOLB; zinc 94.3 0.096 3.3E-06 55.1 8.5 90 165-255 8-148 (334)
251 2kjq_A DNAA-related protein; s 94.2 0.017 5.8E-07 53.0 2.2 72 182-254 36-124 (149)
252 3cf2_A TER ATPase, transitiona 94.2 0.04 1.4E-06 64.5 5.6 50 156-205 201-261 (806)
253 1kgd_A CASK, peripheral plasma 94.1 0.022 7.4E-07 54.2 2.8 22 183-204 6-27 (180)
254 1kag_A SKI, shikimate kinase I 94.0 0.019 6.5E-07 54.0 2.2 22 183-204 5-26 (173)
255 1qhx_A CPT, protein (chloramph 94.0 0.024 8.1E-07 53.6 2.8 22 183-204 4-25 (178)
256 4gp7_A Metallophosphoesterase; 94.0 0.029 1E-06 52.8 3.4 23 182-204 9-31 (171)
257 1ly1_A Polynucleotide kinase; 94.0 0.027 9.1E-07 53.2 3.2 22 183-204 3-24 (181)
258 1knq_A Gluconate kinase; ALFA/ 94.0 0.034 1.1E-06 52.4 3.8 23 182-204 8-30 (175)
259 1iy2_A ATP-dependent metallopr 94.0 0.032 1.1E-06 57.1 3.9 49 156-205 37-96 (278)
260 1pgv_A TMD-1, tropomodulin TMD 93.8 0.029 9.8E-07 53.9 2.9 41 442-482 66-111 (197)
261 2bdt_A BH3686; alpha-beta prot 93.8 0.033 1.1E-06 53.3 3.4 22 183-204 3-24 (189)
262 3fwy_A Light-independent proto 93.8 0.032 1.1E-06 58.2 3.4 24 181-204 47-70 (314)
263 3tr0_A Guanylate kinase, GMP k 93.7 0.031 1.1E-06 54.1 3.1 22 183-204 8-29 (205)
264 3uie_A Adenylyl-sulfate kinase 93.7 0.035 1.2E-06 53.7 3.4 24 182-205 25-48 (200)
265 1ye8_A Protein THEP1, hypothet 93.7 0.033 1.1E-06 52.8 3.1 22 184-205 2-23 (178)
266 4eun_A Thermoresistant glucoki 93.7 0.029 9.9E-07 54.3 2.8 23 182-204 29-51 (200)
267 3trf_A Shikimate kinase, SK; a 93.7 0.03 1E-06 53.3 2.8 23 182-204 5-27 (185)
268 1qvr_A CLPB protein; coiled co 93.6 0.089 3E-06 63.0 7.5 46 159-204 558-610 (854)
269 2qt1_A Nicotinamide riboside k 93.6 0.039 1.3E-06 53.6 3.5 24 181-204 20-43 (207)
270 3asz_A Uridine kinase; cytidin 93.6 0.036 1.2E-06 54.0 3.3 24 181-204 5-28 (211)
271 1pgv_A TMD-1, tropomodulin TMD 93.6 0.071 2.4E-06 51.1 5.2 89 437-526 32-136 (197)
272 3rfe_A Platelet glycoprotein I 93.5 0.065 2.2E-06 47.8 4.7 55 472-529 11-68 (130)
273 3a00_A Guanylate kinase, GMP k 93.5 0.029 1E-06 53.6 2.5 22 183-204 2-23 (186)
274 3tqc_A Pantothenate kinase; bi 93.5 0.066 2.3E-06 55.8 5.3 26 179-204 89-114 (321)
275 1uj2_A Uridine-cytidine kinase 93.5 0.038 1.3E-06 55.7 3.3 24 181-204 21-44 (252)
276 3t61_A Gluconokinase; PSI-biol 93.5 0.026 9.1E-07 54.6 2.1 23 182-204 18-40 (202)
277 2if2_A Dephospho-COA kinase; a 93.4 0.033 1.1E-06 54.0 2.7 22 183-204 2-23 (204)
278 3nbx_X ATPase RAVA; AAA+ ATPas 93.4 0.057 2E-06 60.0 5.0 43 159-205 22-64 (500)
279 1zuh_A Shikimate kinase; alpha 93.4 0.035 1.2E-06 51.9 2.8 24 181-204 6-29 (168)
280 1jjv_A Dephospho-COA kinase; P 93.4 0.042 1.4E-06 53.3 3.4 22 183-204 3-24 (206)
281 1nks_A Adenylate kinase; therm 93.4 0.036 1.2E-06 52.9 2.9 22 183-204 2-23 (194)
282 1uf9_A TT1252 protein; P-loop, 93.3 0.04 1.4E-06 53.2 3.2 25 180-204 6-30 (203)
283 2jaq_A Deoxyguanosine kinase; 93.3 0.037 1.3E-06 53.4 2.9 21 184-204 2-22 (205)
284 3e70_C DPA, signal recognition 93.3 0.064 2.2E-06 56.2 4.9 25 180-204 127-151 (328)
285 1ypw_A Transitional endoplasmi 93.3 0.043 1.5E-06 65.1 4.0 50 156-205 201-261 (806)
286 2j41_A Guanylate kinase; GMP, 93.3 0.037 1.3E-06 53.6 2.8 23 182-204 6-28 (207)
287 2p5t_B PEZT; postsegregational 93.3 0.067 2.3E-06 53.9 4.8 40 165-204 12-54 (253)
288 2rhm_A Putative kinase; P-loop 93.2 0.044 1.5E-06 52.4 3.2 23 182-204 5-27 (193)
289 1um8_A ATP-dependent CLP prote 93.2 0.062 2.1E-06 57.7 4.7 46 159-204 21-94 (376)
290 1cke_A CK, MSSA, protein (cyti 93.2 0.04 1.4E-06 54.3 2.9 22 183-204 6-27 (227)
291 2bbw_A Adenylate kinase 4, AK4 93.2 0.043 1.5E-06 55.0 3.2 23 182-204 27-49 (246)
292 3iij_A Coilin-interacting nucl 93.2 0.036 1.2E-06 52.5 2.4 23 182-204 11-33 (180)
293 1gvn_B Zeta; postsegregational 93.1 0.081 2.8E-06 54.4 5.3 38 167-204 15-55 (287)
294 1kht_A Adenylate kinase; phosp 93.1 0.041 1.4E-06 52.4 2.9 22 183-204 4-25 (192)
295 1ukz_A Uridylate kinase; trans 93.1 0.049 1.7E-06 52.7 3.5 24 181-204 14-37 (203)
296 3dm5_A SRP54, signal recogniti 93.1 0.12 4.1E-06 56.1 6.8 50 181-236 99-148 (443)
297 1y63_A LMAJ004144AAA protein; 93.1 0.045 1.5E-06 52.1 3.1 23 182-204 10-32 (184)
298 3tau_A Guanylate kinase, GMP k 93.1 0.044 1.5E-06 53.4 3.1 23 182-204 8-30 (208)
299 1htw_A HI0065; nucleotide-bind 93.1 0.053 1.8E-06 50.2 3.4 23 182-204 33-55 (158)
300 2orw_A Thymidine kinase; TMTK, 93.1 0.086 2.9E-06 50.2 5.0 21 183-203 4-24 (184)
301 1tev_A UMP-CMP kinase; ploop, 93.1 0.047 1.6E-06 52.2 3.2 23 182-204 3-25 (196)
302 3aez_A Pantothenate kinase; tr 93.0 0.052 1.8E-06 56.5 3.6 24 181-204 89-112 (312)
303 1lvg_A Guanylate kinase, GMP k 93.0 0.037 1.3E-06 53.5 2.3 22 183-204 5-26 (198)
304 3tlx_A Adenylate kinase 2; str 93.0 0.07 2.4E-06 53.4 4.5 37 168-204 15-51 (243)
305 3kl4_A SRP54, signal recogniti 93.0 0.14 4.7E-06 55.6 6.9 50 181-236 96-145 (433)
306 1xjc_A MOBB protein homolog; s 93.0 0.048 1.6E-06 51.0 2.9 24 181-204 3-26 (169)
307 1g8p_A Magnesium-chelatase 38 93.0 0.05 1.7E-06 57.6 3.5 46 158-205 23-68 (350)
308 1via_A Shikimate kinase; struc 92.9 0.037 1.3E-06 52.1 2.2 22 183-204 5-26 (175)
309 1znw_A Guanylate kinase, GMP k 92.9 0.048 1.7E-06 53.0 3.0 23 182-204 20-42 (207)
310 2ze6_A Isopentenyl transferase 92.9 0.05 1.7E-06 54.9 3.2 22 183-204 2-23 (253)
311 2yvu_A Probable adenylyl-sulfa 92.9 0.052 1.8E-06 51.7 3.2 25 181-205 12-36 (186)
312 2hf9_A Probable hydrogenase ni 92.9 0.087 3E-06 51.8 4.9 36 168-205 26-61 (226)
313 3p32_A Probable GTPase RV1496/ 92.9 0.093 3.2E-06 55.8 5.4 37 168-204 65-101 (355)
314 2qor_A Guanylate kinase; phosp 92.9 0.04 1.4E-06 53.4 2.4 24 181-204 11-34 (204)
315 2jeo_A Uridine-cytidine kinase 92.8 0.061 2.1E-06 53.9 3.6 24 181-204 24-47 (245)
316 2c95_A Adenylate kinase 1; tra 92.8 0.049 1.7E-06 52.2 2.8 23 182-204 9-31 (196)
317 3jvv_A Twitching mobility prot 92.7 0.085 2.9E-06 55.9 4.8 74 183-259 124-235 (356)
318 3cm0_A Adenylate kinase; ATP-b 92.7 0.056 1.9E-06 51.3 3.1 23 182-204 4-26 (186)
319 2wsm_A Hydrogenase expression/ 92.7 0.063 2.1E-06 52.6 3.5 41 163-205 13-53 (221)
320 2iyv_A Shikimate kinase, SK; t 92.7 0.04 1.4E-06 52.3 2.0 22 183-204 3-24 (184)
321 3t15_A Ribulose bisphosphate c 92.7 0.05 1.7E-06 56.2 2.9 25 181-205 35-59 (293)
322 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.059 2E-06 54.5 3.3 23 182-204 4-26 (260)
323 1zu4_A FTSY; GTPase, signal re 92.5 0.13 4.3E-06 53.7 5.8 24 181-204 104-127 (320)
324 1e6c_A Shikimate kinase; phosp 92.5 0.047 1.6E-06 51.1 2.2 22 183-204 3-24 (173)
325 2pt5_A Shikimate kinase, SK; a 92.5 0.06 2E-06 50.2 2.9 21 184-204 2-22 (168)
326 2xxa_A Signal recognition part 92.5 0.11 3.6E-06 56.7 5.3 38 167-204 78-122 (433)
327 2i3b_A HCR-ntpase, human cance 92.5 0.053 1.8E-06 51.9 2.6 22 184-205 3-24 (189)
328 2grj_A Dephospho-COA kinase; T 92.4 0.066 2.2E-06 51.4 3.2 24 181-204 11-34 (192)
329 2dhr_A FTSH; AAA+ protein, hex 92.4 0.077 2.6E-06 58.9 4.2 51 155-205 27-87 (499)
330 1z6g_A Guanylate kinase; struc 92.4 0.051 1.7E-06 53.4 2.5 23 182-204 23-45 (218)
331 1rj9_A FTSY, signal recognitio 92.4 0.069 2.3E-06 55.3 3.5 24 181-204 101-124 (304)
332 1qf9_A UMP/CMP kinase, protein 92.4 0.061 2.1E-06 51.3 3.0 23 182-204 6-28 (194)
333 2vli_A Antibiotic resistance p 92.4 0.048 1.6E-06 51.7 2.1 23 182-204 5-27 (183)
334 2bwj_A Adenylate kinase 5; pho 92.4 0.055 1.9E-06 52.0 2.6 23 182-204 12-34 (199)
335 4e22_A Cytidylate kinase; P-lo 92.4 0.064 2.2E-06 54.0 3.1 23 182-204 27-49 (252)
336 2plr_A DTMP kinase, probable t 92.4 0.066 2.2E-06 52.0 3.2 22 183-204 5-26 (213)
337 2pbr_A DTMP kinase, thymidylat 92.3 0.063 2.2E-06 51.3 2.9 21 184-204 2-22 (195)
338 2og2_A Putative signal recogni 92.3 0.11 3.7E-06 55.0 5.0 24 181-204 156-179 (359)
339 2onk_A Molybdate/tungstate ABC 92.3 0.068 2.3E-06 53.3 3.2 24 180-204 23-46 (240)
340 2cdn_A Adenylate kinase; phosp 92.2 0.066 2.3E-06 51.7 2.9 23 182-204 20-42 (201)
341 2j37_W Signal recognition part 92.2 0.2 6.7E-06 55.6 7.1 44 181-230 100-143 (504)
342 3ney_A 55 kDa erythrocyte memb 92.2 0.066 2.3E-06 51.4 2.8 24 181-204 18-41 (197)
343 3b85_A Phosphate starvation-in 92.2 0.11 3.8E-06 50.5 4.5 22 183-204 23-44 (208)
344 1g41_A Heat shock protein HSLU 92.1 0.11 3.8E-06 56.4 4.9 46 159-204 15-72 (444)
345 1sq5_A Pantothenate kinase; P- 92.1 0.14 4.9E-06 53.1 5.6 25 180-204 78-102 (308)
346 1vma_A Cell division protein F 92.1 0.13 4.4E-06 53.3 5.1 24 181-204 103-126 (306)
347 3b9q_A Chloroplast SRP recepto 92.1 0.081 2.8E-06 54.7 3.6 24 181-204 99-122 (302)
348 1s96_A Guanylate kinase, GMP k 92.0 0.073 2.5E-06 52.3 3.0 23 182-204 16-38 (219)
349 2f1r_A Molybdopterin-guanine d 92.0 0.052 1.8E-06 51.0 1.9 23 182-204 2-24 (171)
350 2f6r_A COA synthase, bifunctio 92.0 0.077 2.6E-06 54.4 3.3 24 181-204 74-97 (281)
351 3umf_A Adenylate kinase; rossm 91.9 0.088 3E-06 51.5 3.4 26 180-205 27-52 (217)
352 2yhs_A FTSY, cell division pro 91.9 0.13 4.6E-06 56.3 5.1 37 168-204 272-315 (503)
353 3tif_A Uncharacterized ABC tra 91.9 0.079 2.7E-06 52.7 3.1 22 183-204 32-53 (235)
354 2pcj_A ABC transporter, lipopr 91.8 0.073 2.5E-06 52.5 2.8 22 183-204 31-52 (224)
355 1yrb_A ATP(GTP)binding protein 91.8 0.1 3.5E-06 52.6 4.0 24 181-204 13-36 (262)
356 2ehv_A Hypothetical protein PH 91.8 0.077 2.6E-06 53.0 3.0 23 182-204 30-52 (251)
357 2pez_A Bifunctional 3'-phospho 91.8 0.086 2.9E-06 49.8 3.2 23 182-204 5-27 (179)
358 3end_A Light-independent proto 91.8 0.094 3.2E-06 54.4 3.8 25 180-204 39-63 (307)
359 1nn5_A Similar to deoxythymidy 91.7 0.08 2.7E-06 51.5 2.9 23 182-204 9-31 (215)
360 1ex7_A Guanylate kinase; subst 91.7 0.066 2.3E-06 51.0 2.2 22 183-204 2-23 (186)
361 3lnc_A Guanylate kinase, GMP k 91.7 0.059 2E-06 53.4 1.9 22 183-204 28-50 (231)
362 2z0h_A DTMP kinase, thymidylat 91.7 0.084 2.9E-06 50.6 3.0 21 184-204 2-22 (197)
363 4a74_A DNA repair and recombin 91.6 0.089 3E-06 51.8 3.2 23 182-204 25-47 (231)
364 1vht_A Dephospho-COA kinase; s 91.6 0.099 3.4E-06 51.1 3.4 23 182-204 4-26 (218)
365 1gtv_A TMK, thymidylate kinase 91.6 0.046 1.6E-06 53.3 0.9 21 184-204 2-22 (214)
366 1aky_A Adenylate kinase; ATP:A 91.6 0.086 3E-06 51.7 3.0 23 182-204 4-26 (220)
367 2px0_A Flagellar biosynthesis 91.5 0.084 2.9E-06 54.5 2.9 24 181-204 104-127 (296)
368 2wwf_A Thymidilate kinase, put 91.5 0.079 2.7E-06 51.5 2.6 23 182-204 10-32 (212)
369 1zd8_A GTP:AMP phosphotransfer 91.5 0.079 2.7E-06 52.3 2.6 23 182-204 7-29 (227)
370 2cbz_A Multidrug resistance-as 91.5 0.091 3.1E-06 52.3 3.1 24 182-205 31-54 (237)
371 1b0u_A Histidine permease; ABC 91.5 0.089 3.1E-06 53.2 3.0 23 182-204 32-54 (262)
372 3gfo_A Cobalt import ATP-bindi 91.5 0.09 3.1E-06 53.6 3.0 22 183-204 35-56 (275)
373 1ji0_A ABC transporter; ATP bi 91.5 0.092 3.1E-06 52.4 3.1 22 183-204 33-54 (240)
374 1m7g_A Adenylylsulfate kinase; 91.4 0.098 3.4E-06 50.9 3.2 23 182-204 25-47 (211)
375 3nwj_A ATSK2; P loop, shikimat 91.4 0.074 2.5E-06 53.4 2.2 22 183-204 49-70 (250)
376 1g6h_A High-affinity branched- 91.3 0.095 3.2E-06 52.9 3.1 22 183-204 34-55 (257)
377 2olj_A Amino acid ABC transpor 91.3 0.095 3.2E-06 53.0 3.0 23 182-204 50-72 (263)
378 2v54_A DTMP kinase, thymidylat 91.3 0.092 3.1E-06 50.6 2.8 23 182-204 4-26 (204)
379 1sgw_A Putative ABC transporte 91.3 0.082 2.8E-06 51.6 2.5 22 183-204 36-57 (214)
380 3fb4_A Adenylate kinase; psych 91.3 0.095 3.3E-06 51.1 3.0 21 184-204 2-22 (216)
381 2d2e_A SUFC protein; ABC-ATPas 91.3 0.1 3.4E-06 52.4 3.2 22 183-204 30-51 (250)
382 1mv5_A LMRA, multidrug resista 91.2 0.11 3.6E-06 52.1 3.3 23 182-204 28-50 (243)
383 2pze_A Cystic fibrosis transme 91.2 0.095 3.3E-06 51.8 2.9 22 183-204 35-56 (229)
384 4g1u_C Hemin import ATP-bindin 91.2 0.1 3.4E-06 53.0 3.0 22 183-204 38-59 (266)
385 1cp2_A CP2, nitrogenase iron p 91.2 0.11 3.9E-06 52.5 3.5 22 183-204 2-23 (269)
386 1vpl_A ABC transporter, ATP-bi 91.1 0.1 3.5E-06 52.5 3.0 22 183-204 42-63 (256)
387 3dl0_A Adenylate kinase; phosp 91.1 0.1 3.5E-06 50.9 3.0 21 184-204 2-22 (216)
388 2zu0_C Probable ATP-dependent 91.1 0.11 3.7E-06 52.8 3.1 23 182-204 46-68 (267)
389 1j8m_F SRP54, signal recogniti 91.1 0.29 9.8E-06 50.4 6.4 42 182-229 98-139 (297)
390 1svm_A Large T antigen; AAA+ f 91.0 0.17 5.9E-06 53.9 4.8 37 168-204 155-191 (377)
391 3ake_A Cytidylate kinase; CMP 91.0 0.11 3.6E-06 50.3 3.0 21 184-204 4-24 (208)
392 1np6_A Molybdopterin-guanine d 91.0 0.11 3.6E-06 49.0 2.8 23 182-204 6-28 (174)
393 2afh_E Nitrogenase iron protei 91.0 0.12 4.1E-06 53.1 3.5 23 182-204 2-24 (289)
394 2ff7_A Alpha-hemolysin translo 91.0 0.11 3.7E-06 52.1 3.1 22 183-204 36-57 (247)
395 2qi9_C Vitamin B12 import ATP- 90.9 0.11 3.8E-06 52.1 3.0 22 183-204 27-48 (249)
396 1zak_A Adenylate kinase; ATP:A 90.8 0.091 3.1E-06 51.6 2.3 23 182-204 5-27 (222)
397 2ghi_A Transport protein; mult 90.8 0.12 3.9E-06 52.3 3.1 22 183-204 47-68 (260)
398 2ixe_A Antigen peptide transpo 90.8 0.12 3.9E-06 52.7 3.1 23 182-204 45-67 (271)
399 2yz2_A Putative ABC transporte 90.8 0.12 3.9E-06 52.5 3.1 22 183-204 34-55 (266)
400 1tq4_A IIGP1, interferon-induc 90.7 0.12 4.1E-06 55.8 3.3 35 170-204 57-91 (413)
401 2nq2_C Hypothetical ABC transp 90.7 0.12 4E-06 52.0 3.0 22 183-204 32-53 (253)
402 3d3q_A TRNA delta(2)-isopenten 90.7 0.12 4.2E-06 54.0 3.2 22 183-204 8-29 (340)
403 2ihy_A ABC transporter, ATP-bi 90.7 0.12 4E-06 52.8 3.0 22 183-204 48-69 (279)
404 2wji_A Ferrous iron transport 90.6 0.16 5.6E-06 46.9 3.7 23 183-205 4-26 (165)
405 1oix_A RAS-related protein RAB 90.5 0.12 4E-06 49.4 2.7 24 182-205 29-52 (191)
406 3ice_A Transcription terminati 90.5 0.16 5.4E-06 53.7 3.8 34 170-204 163-196 (422)
407 2v3c_C SRP54, signal recogniti 90.5 0.15 5.1E-06 55.6 3.8 38 168-205 78-122 (432)
408 3k1j_A LON protease, ATP-depen 90.4 0.18 6E-06 57.8 4.5 44 158-205 40-83 (604)
409 1q3t_A Cytidylate kinase; nucl 90.4 0.14 4.6E-06 50.9 3.1 25 180-204 14-38 (236)
410 2vp4_A Deoxynucleoside kinase; 90.2 0.12 4E-06 51.2 2.4 24 181-204 19-42 (230)
411 3r20_A Cytidylate kinase; stru 90.1 0.14 4.8E-06 50.6 2.9 23 182-204 9-31 (233)
412 2dyk_A GTP-binding protein; GT 90.1 0.17 5.6E-06 46.3 3.3 23 183-205 2-24 (161)
413 2zej_A Dardarin, leucine-rich 90.0 0.15 5E-06 48.3 2.9 22 184-205 4-25 (184)
414 2xb4_A Adenylate kinase; ATP-b 90.0 0.14 4.9E-06 50.3 2.9 21 184-204 2-22 (223)
415 2cvh_A DNA repair and recombin 90.0 0.2 6.9E-06 48.7 4.0 24 181-204 19-42 (220)
416 2f9l_A RAB11B, member RAS onco 90.0 0.15 5.1E-06 48.9 3.0 24 182-205 5-28 (199)
417 1fzq_A ADP-ribosylation factor 90.0 0.2 7E-06 47.1 3.9 26 180-205 14-39 (181)
418 1e4v_A Adenylate kinase; trans 89.9 0.14 4.8E-06 49.9 2.7 21 184-204 2-22 (214)
419 2w0m_A SSO2452; RECA, SSPF, un 89.9 0.15 5.2E-06 50.0 3.0 23 182-204 23-45 (235)
420 3be4_A Adenylate kinase; malar 89.8 0.14 4.9E-06 50.0 2.7 22 183-204 6-27 (217)
421 2pjz_A Hypothetical protein ST 89.8 0.16 5.4E-06 51.3 3.0 22 183-204 31-52 (263)
422 2wjg_A FEOB, ferrous iron tran 89.7 0.2 7E-06 47.2 3.7 24 182-205 7-30 (188)
423 1ls1_A Signal recognition part 89.7 0.18 6.2E-06 51.9 3.5 23 182-204 98-120 (295)
424 3sop_A Neuronal-specific septi 89.7 0.14 4.9E-06 51.9 2.7 22 184-205 4-25 (270)
425 1ak2_A Adenylate kinase isoenz 89.6 0.17 5.8E-06 50.1 3.1 23 182-204 16-38 (233)
426 1a7j_A Phosphoribulokinase; tr 89.6 0.1 3.5E-06 53.6 1.6 24 181-204 4-27 (290)
427 2eyu_A Twitching motility prot 89.6 0.18 6.3E-06 50.9 3.4 23 182-204 25-47 (261)
428 2v9p_A Replication protein E1; 89.4 0.18 6.2E-06 52.0 3.2 23 182-204 126-148 (305)
429 3nh6_A ATP-binding cassette SU 89.4 0.16 5.4E-06 52.5 2.7 23 182-204 80-102 (306)
430 3crm_A TRNA delta(2)-isopenten 89.2 0.19 6.4E-06 52.2 3.1 22 183-204 6-27 (323)
431 1nij_A Hypothetical protein YJ 89.1 0.18 6.3E-06 52.5 3.0 25 181-205 3-27 (318)
432 1ltq_A Polynucleotide kinase; 89.0 0.19 6.6E-06 51.8 3.2 22 183-204 3-24 (301)
433 2bbs_A Cystic fibrosis transme 89.0 0.19 6.3E-06 51.6 2.9 23 182-204 64-86 (290)
434 2qm8_A GTPase/ATPase; G protei 89.0 0.33 1.1E-05 51.0 4.9 34 171-204 44-77 (337)
435 3sr0_A Adenylate kinase; phosp 89.0 0.2 6.8E-06 48.6 3.0 22 184-205 2-23 (206)
436 1n0w_A DNA repair protein RAD5 89.0 0.2 6.9E-06 49.6 3.1 23 182-204 24-46 (243)
437 2p67_A LAO/AO transport system 88.9 0.35 1.2E-05 50.9 5.1 25 180-204 54-78 (341)
438 3con_A GTPase NRAS; structural 88.9 0.64 2.2E-05 43.8 6.6 23 183-205 22-44 (190)
439 3a8t_A Adenylate isopentenyltr 88.8 0.23 7.9E-06 51.7 3.5 23 182-204 40-62 (339)
440 1sky_E F1-ATPase, F1-ATP synth 88.7 0.3 1E-05 53.2 4.4 21 184-204 153-173 (473)
441 2ce2_X GTPase HRAS; signaling 88.7 0.19 6.6E-06 45.9 2.6 22 184-205 5-26 (166)
442 3tkl_A RAS-related protein RAB 88.7 0.58 2E-05 44.3 6.1 25 181-205 15-39 (196)
443 2lkc_A Translation initiation 88.7 0.31 1.1E-05 45.3 4.1 25 181-205 7-31 (178)
444 2e87_A Hypothetical protein PH 88.7 3.5 0.00012 43.4 12.8 25 181-205 166-190 (357)
445 2nzj_A GTP-binding protein REM 88.5 0.23 8E-06 46.0 3.1 24 182-205 4-27 (175)
446 3tui_C Methionine import ATP-b 88.5 0.22 7.6E-06 52.6 3.1 23 182-204 54-76 (366)
447 1nlf_A Regulatory protein REPA 88.5 0.19 6.7E-06 51.2 2.7 23 182-204 30-52 (279)
448 1cr0_A DNA primase/helicase; R 88.5 0.21 7.2E-06 51.4 2.9 24 182-205 35-58 (296)
449 1f6b_A SAR1; gtpases, N-termin 88.4 0.33 1.1E-05 46.4 4.2 34 171-205 15-48 (198)
450 3exa_A TRNA delta(2)-isopenten 88.4 0.23 8E-06 51.0 3.1 23 182-204 3-25 (322)
451 4eaq_A DTMP kinase, thymidylat 88.3 0.24 8.2E-06 48.9 3.1 24 181-204 25-48 (229)
452 3kta_A Chromosome segregation 88.3 0.23 7.9E-06 46.8 2.9 22 183-204 27-48 (182)
453 3def_A T7I23.11 protein; chlor 88.3 0.49 1.7E-05 47.6 5.5 38 168-205 22-59 (262)
454 2gj8_A MNME, tRNA modification 88.2 0.23 7.8E-06 46.4 2.8 23 183-205 5-27 (172)
455 2vhj_A Ntpase P4, P4; non- hyd 88.2 0.25 8.7E-06 51.0 3.2 24 182-205 123-146 (331)
456 2ocp_A DGK, deoxyguanosine kin 88.1 0.25 8.4E-06 49.2 3.1 23 182-204 2-24 (241)
457 1z2a_A RAS-related protein RAB 88.1 0.3 1E-05 44.8 3.5 24 182-205 5-28 (168)
458 3kjh_A CO dehydrogenase/acetyl 88.1 0.26 8.8E-06 49.1 3.3 20 185-204 3-22 (254)
459 2g3y_A GTP-binding protein GEM 88.0 1.3 4.5E-05 42.9 8.2 23 182-204 37-59 (211)
460 1u8z_A RAS-related protein RAL 88.0 0.25 8.5E-06 45.3 2.9 24 182-205 4-27 (168)
461 3zvl_A Bifunctional polynucleo 88.0 0.25 8.6E-06 53.6 3.3 25 181-205 257-281 (416)
462 2ged_A SR-beta, signal recogni 87.8 0.28 9.7E-06 46.5 3.2 25 181-205 47-71 (193)
463 2erx_A GTP-binding protein DI- 87.8 0.27 9.1E-06 45.4 3.0 23 183-205 4-26 (172)
464 3tw8_B RAS-related protein RAB 87.8 0.31 1E-05 45.4 3.4 25 181-205 8-32 (181)
465 3t1o_A Gliding protein MGLA; G 87.7 0.25 8.5E-06 46.9 2.7 23 182-204 14-36 (198)
466 1h65_A Chloroplast outer envel 87.7 0.58 2E-05 47.3 5.7 37 169-205 26-62 (270)
467 1lw7_A Transcriptional regulat 87.7 0.29 9.8E-06 52.2 3.5 23 182-204 170-192 (365)
468 1c1y_A RAS-related protein RAP 87.6 0.26 9.1E-06 45.2 2.8 23 183-205 4-26 (167)
469 3q72_A GTP-binding protein RAD 87.6 0.24 8.3E-06 45.5 2.5 22 184-205 4-25 (166)
470 1z08_A RAS-related protein RAB 87.5 0.31 1.1E-05 44.9 3.2 24 182-205 6-29 (170)
471 1z47_A CYSA, putative ABC-tran 87.5 0.28 9.5E-06 51.8 3.2 22 183-204 42-63 (355)
472 1svi_A GTP-binding protein YSX 87.5 0.32 1.1E-05 46.1 3.4 25 181-205 22-46 (195)
473 3fvq_A Fe(3+) IONS import ATP- 87.5 0.26 9E-06 52.0 2.9 22 183-204 31-52 (359)
474 2fn4_A P23, RAS-related protei 87.5 0.36 1.2E-05 44.9 3.7 25 181-205 8-32 (181)
475 3q85_A GTP-binding protein REM 87.4 0.37 1.3E-05 44.4 3.7 23 182-204 2-24 (169)
476 2www_A Methylmalonic aciduria 87.4 0.32 1.1E-05 51.4 3.6 24 181-204 73-96 (349)
477 3k53_A Ferrous iron transport 87.4 0.55 1.9E-05 47.5 5.3 24 182-205 3-26 (271)
478 2obl_A ESCN; ATPase, hydrolase 87.4 0.25 8.5E-06 52.1 2.7 23 183-205 72-94 (347)
479 3foz_A TRNA delta(2)-isopenten 87.3 0.3 1E-05 50.2 3.1 23 182-204 10-32 (316)
480 3fkq_A NTRC-like two-domain pr 87.3 0.37 1.3E-05 51.5 4.1 25 180-204 141-166 (373)
481 1z0j_A RAB-22, RAS-related pro 87.2 0.29 9.8E-06 45.1 2.8 24 182-205 6-29 (170)
482 1ek0_A Protein (GTP-binding pr 87.2 0.29 1E-05 45.0 2.9 22 184-205 5-26 (170)
483 1pui_A ENGB, probable GTP-bind 87.1 0.17 5.9E-06 48.8 1.2 24 182-205 26-49 (210)
484 1p5z_B DCK, deoxycytidine kina 87.0 0.22 7.7E-06 50.2 2.1 24 181-204 23-46 (263)
485 1m7b_A RND3/RHOE small GTP-bin 87.0 0.28 9.6E-06 46.2 2.6 24 182-205 7-30 (184)
486 1kao_A RAP2A; GTP-binding prot 87.0 0.3 1E-05 44.6 2.8 23 183-205 4-26 (167)
487 2yyz_A Sugar ABC transporter, 87.0 0.31 1.1E-05 51.5 3.2 22 183-204 30-51 (359)
488 1wms_A RAB-9, RAB9, RAS-relate 87.0 1.2 4.2E-05 41.1 7.1 24 182-205 7-30 (177)
489 3d31_A Sulfate/molybdate ABC t 86.9 0.28 9.7E-06 51.6 2.8 22 183-204 27-48 (348)
490 2ffh_A Protein (FFH); SRP54, s 86.8 0.59 2E-05 50.5 5.3 42 182-229 98-139 (425)
491 3ihw_A Centg3; RAS, centaurin, 86.8 0.31 1E-05 46.1 2.8 24 182-205 20-43 (184)
492 2qnr_A Septin-2, protein NEDD5 86.8 0.26 8.8E-06 51.0 2.4 22 182-204 19-40 (301)
493 2it1_A 362AA long hypothetical 86.8 0.32 1.1E-05 51.5 3.1 22 183-204 30-51 (362)
494 1nrj_B SR-beta, signal recogni 86.7 0.35 1.2E-05 46.9 3.3 25 181-205 11-35 (218)
495 1g29_1 MALK, maltose transport 86.6 0.33 1.1E-05 51.6 3.2 22 183-204 30-51 (372)
496 1r8s_A ADP-ribosylation factor 86.6 0.32 1.1E-05 44.5 2.7 21 185-205 3-23 (164)
497 3rlf_A Maltose/maltodextrin im 86.6 0.33 1.1E-05 51.6 3.1 22 183-204 30-51 (381)
498 3c5c_A RAS-like protein 12; GD 86.5 0.33 1.1E-05 46.0 2.8 24 182-205 21-44 (187)
499 3kkq_A RAS-related protein M-R 86.5 0.36 1.2E-05 45.2 3.1 25 181-205 17-41 (183)
500 1v43_A Sugar-binding transport 86.5 0.34 1.1E-05 51.5 3.1 23 182-204 37-59 (372)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.6e-35 Score=340.56 Aligned_cols=224 Identities=20% Similarity=0.226 Sum_probs=180.0
Q ss_pred eecHhHHHHHHHHHhcC-CCCeEEEEEecCCCChHHHHHHHHhc--cccccccccccce---------------------
Q 048418 162 VGLDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFAAEAYS--SNYVKHYFDCHAW--------------------- 217 (798)
Q Consensus 162 vG~~~~~~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~w--------------------- 217 (798)
|||+.++++|.++|..+ ++.++||+|+|||||||||||+++|+ |.+++.+|++++|
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999765 44689999999999999999999998 6789999998888
Q ss_pred ---------------------------------EEEEEEECCCChhhHHHHhhhcCCCCCCcEEEEEeeeccccc--c--
Q 048418 218 ---------------------------------RYLIVFDNVWRISAWDVIRKILPDNQNGSRVLITLAQIEIVT--S-- 260 (798)
Q Consensus 218 ---------------------------------r~LivlDdvw~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~--~-- 260 (798)
||||||||||+.+++ .+.. .+||+||||||++.|+. +
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC
Confidence 699999999998765 2211 17999999999999987 1
Q ss_pred -cccc------------------------hhhhhcccee-----------eccCcccCCcCCCCchHHHhhhccC---Cc
Q 048418 261 -FQFE------------------------NGENIGLDFV-----------PTGGPLRATYQGWPFHILYHGSISL---EE 301 (798)
Q Consensus 261 -~~~~------------------------~l~~i~~~i~-----------~~g~~L~~~~~~W~~~~~~l~~~~~---~~ 301 (798)
.+|+ ++.+++++|+ ++|+.|+.. .|+.. +.+.+..+ ..
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~--~w~~~-~~l~~~l~~~~~~ 361 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK--TFEKM-AQLNNKLESRGLV 361 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS--SHHHH-HHHHHHHHHHCSS
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc--hHHHH-HHhHHHhhcccHH
Confidence 2343 3455677777 777777653 47621 22322222 34
Q ss_pred cHHHHHhccccccccccCCCCCCchHHHh-----------HhccCCCCceechhhHHHHHHHc--CCCCC-----CHHHH
Q 048418 302 NIDEVLTMSLGLQCVIYCMLPFCLKPCFL-----------YFSVFPAHLEISTRQLYQLWIAE--GFISD-----NNEAT 363 (798)
Q Consensus 302 ~i~~~l~~s~~~~~~~y~~L~~~lk~cfl-----------~~~~fp~~~~i~~~~Li~~Wiae--g~i~~-----~~e~~ 363 (798)
++.+++++| |+.||.++|.||+ |||+||+++.|+ +++|+|+ ||+.. +.+++
T Consensus 362 ~i~~~l~~S-------y~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~ 430 (549)
T 2a5y_B 362 GVECITPYS-------YKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEV 430 (549)
T ss_dssp TTCCCSSSS-------SSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHH
T ss_pred HHHHHHhcc-------cccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHH
Confidence 588999999 9999999999999 999999999999 8999999 99965 47888
Q ss_pred HHHHHHHHHhCCcceeeccCCCCceeEEEcCcchHHHHHHHhhccc
Q 048418 364 AEKYLEQLINRGFVEANKRRAGGTINTCSIPGCCHPVLLGVASESD 409 (798)
Q Consensus 364 ~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli~dla~~i~~~e~ 409 (798)
++ ||++|+++||++..... ...+|+|||+||++|++++.+++
T Consensus 431 ~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 431 AD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHH
T ss_pred HH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHH
Confidence 88 99999999999987642 34579999999999999988765
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=3.9e-30 Score=326.29 Aligned_cols=229 Identities=19% Similarity=0.286 Sum_probs=186.1
Q ss_pred CCCCCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccc-ccccc-ccce--------------
Q 048418 154 SSSKNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYV-KHYFD-CHAW-------------- 217 (798)
Q Consensus 154 ~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~w-------------- 217 (798)
.+.....+|||+.++++|.++|...+.++++|+|+||||+||||||+++|++.++ ..+|. .++|
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 3345667999999999999999876677999999999999999999999997544 55665 4446
Q ss_pred --------------------------------------EEEEEEECCCChhhHHHHhhhcCCCCCCcEEEEEeeeccccc
Q 048418 218 --------------------------------------RYLIVFDNVWRISAWDVIRKILPDNQNGSRVLITLAQIEIVT 259 (798)
Q Consensus 218 --------------------------------------r~LivlDdvw~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 259 (798)
|+||||||||+..+|+.+ ++|||||||||++.|+.
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHH
Confidence 799999999999877654 57999999999999984
Q ss_pred -----ccccc-----------------------hhhhhcccee-----------eccCcccCCcCCCCchHHHhhhccC-
Q 048418 260 -----SFQFE-----------------------NGENIGLDFV-----------PTGGPLRATYQGWPFHILYHGSISL- 299 (798)
Q Consensus 260 -----~~~~~-----------------------~l~~i~~~i~-----------~~g~~L~~~~~~W~~~~~~l~~~~~- 299 (798)
...|+ .+.+++++|+ ++|+.|+.....|. .+++.+..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~---~~l~~l~~~ 348 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWA---YYLRQLQNK 348 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHH---HHHHHHHSC
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHH---HHHHHHhhh
Confidence 11111 3345566666 66777766446788 77666533
Q ss_pred -----------C-ccHHHHHhccccccccccCCCCCCchHHHhHhccCCCCceechhhHHHHHHHcCCCCCCHHHHHHHH
Q 048418 300 -----------E-ENIDEVLTMSLGLQCVIYCMLPFCLKPCFLYFSVFPAHLEISTRQLYQLWIAEGFISDNNEATAEKY 367 (798)
Q Consensus 300 -----------~-~~i~~~l~~s~~~~~~~y~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~~~~~ 367 (798)
+ +.+..++++| |+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s-------~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~ 414 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSIS-------VEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDI 414 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHH-------HHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHH
T ss_pred hhhhcccccccchHHHHHHHHHH-------HHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHH
Confidence 0 2389999999 999999999999999999999999999999999665 4668999
Q ss_pred HHHHHhCCcceeeccCCCCceeEEEcCcchHHHHHHHhhccc
Q 048418 368 LEQLINRGFVEANKRRAGGTINTCSIPGCCHPVLLGVASESD 409 (798)
Q Consensus 368 ~~~L~~~~ll~~~~~~~~g~~~~~~mHdli~dla~~i~~~e~ 409 (798)
+++|+++||++... +|...+|+|||++|++|+..+.++.
T Consensus 415 l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHHH
Confidence 99999999999764 4455679999999999999987764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=5.6e-30 Score=307.44 Aligned_cols=251 Identities=20% Similarity=0.183 Sum_probs=128.5
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-cCcccccCcCccceEEecCCCcc-ccChhhhhCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPPSLLSNLPN 494 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~ 494 (798)
+++|+.|.+.++... ..++..++..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|...++++++
T Consensus 268 l~~L~~L~L~~n~l~---~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~ 344 (768)
T 3rgz_A 268 LKSLQYLSLAENKFT---GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344 (768)
T ss_dssp CTTCCEEECCSSEEE---ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT
T ss_pred cCCCCEEECcCCccC---CccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC
Confidence 455555555544321 0112222233466777777777766 66666777777777777777666 666653367777
Q ss_pred CcEeeccccccc-cchhhhcccc-cCceeccCCcccCCCCCCCCCC--CCCcceeecCCC---CcchhhhcCCCCCCCeE
Q 048418 495 LYTLDMPFSYID-HTADEFWKMN-KLKHLNFGSITLPAHPGKYCGS--LENLNFISALHP---CCCTEDILGRLPNLRNL 567 (798)
Q Consensus 495 L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~L~~~~i~~~~~p~i~~--L~~L~~l~~~~~---~~~~~~~l~~l~~L~~L 567 (798)
|++|++++|.+. .+|..+.+++ +|++|++++|.+.....+.+.. +++|+.+++... +..+.. ++++++|+.|
T Consensus 345 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 423 (768)
T 3rgz_A 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSL 423 (768)
T ss_dssp CCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEE
T ss_pred CCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH-HhcCCCCCEE
Confidence 777777777654 5566666665 6666666666654221123332 445555555431 123333 5555555555
Q ss_pred EEecccchhhhhHHHhccCCCCCCEEEEecCCC----------CCCCceeee-----------ecCCCCCCeeEEEEEec
Q 048418 568 RIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK----------MPAFSKIVL-----------VEYQFPPRLTHLSFSNT 626 (798)
Q Consensus 568 ~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i----------~~~L~~L~l-----------~~~~~l~~L~~L~L~~~ 626 (798)
++++| ...+.+|..+..+++|+.|++++|.+ +++|+.|.+ ++.. +++|++|++++|
T Consensus 424 ~Ls~N--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N 500 (768)
T 3rgz_A 424 HLSFN--YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNN 500 (768)
T ss_dssp ECCSS--EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSS
T ss_pred ECcCC--cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEccCC
Confidence 55554 23333444444445555555544331 223333333 2223 455555555555
Q ss_pred cCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecC
Q 048418 627 ELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSM 675 (798)
Q Consensus 627 ~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 675 (798)
.+.+..+..++.+++|+.|++++|.+.+. ++..+..+++|+.|++++|
T Consensus 501 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 501 RLTGEIPKWIGRLENLAILKLSNNSFSGN-IPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGGCTTCCEEECCSS
T ss_pred ccCCcCChHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCCCEEECCCC
Confidence 55544555555555555555555544432 2333444444444444444
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=8.3e-29 Score=297.23 Aligned_cols=274 Identities=18% Similarity=0.159 Sum_probs=139.2
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-----------------------cCcccccCc-Cccc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-----------------------QYPSGIENL-FLLR 472 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-----------------------~lp~~i~~L-~~Lr 472 (798)
+++|+.|.+.++... ...+..+..+++|++|++++|.+. .+|..+..+ ++|+
T Consensus 222 l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 222 CSALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp CCSCCEEECCSSCCC----SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCS
T ss_pred CCCCCEEECcCCcCC----CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCC
Confidence 556666666655431 233445556666666666665554 334443332 4455
Q ss_pred eEEecCCCcc-ccChhhhhCCCCCcEeeccccccc-cchhh-hcccccCceeccCCcccCCCCCC-CCCCCC-Ccceeec
Q 048418 473 YLKLNIPSLK-SLPPSLLSNLPNLYTLDMPFSYID-HTADE-FWKMNKLKHLNFGSITLPAHPGK-YCGSLE-NLNFISA 547 (798)
Q Consensus 473 ~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~-i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~-~L~~l~~ 547 (798)
+|++++|.+. .+|..+ +++++|++|++++|.+. .+|.. +.++++|++|++++|.+. ..+| .+.++. +|+.+++
T Consensus 298 ~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-GELPESLTNLSASLLTLDL 375 (768)
T ss_dssp EEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE-ECCCTTHHHHTTTCSEEEC
T ss_pred EEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC-ccccHHHHhhhcCCcEEEc
Confidence 5555544444 334343 45555555555555443 44433 445555555555555443 2234 444443 4555554
Q ss_pred CCC---CcchhhhcCC--CCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCC----------CCCCceeee---
Q 048418 548 LHP---CCCTEDILGR--LPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK----------MPAFSKIVL--- 609 (798)
Q Consensus 548 ~~~---~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i----------~~~L~~L~l--- 609 (798)
... +..+.. +.. +++|+.|++++| ...+.+|..+..+++|+.|++++|.+ +++|+.|.+
T Consensus 376 s~N~l~~~~~~~-~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 376 SSNNFSGPILPN-LCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp CSSEEEEECCTT-TTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred cCCCcCCCcChh-hhhcccCCccEEECCCC--ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 431 122333 333 566777777766 34445667777778888888877542 234444443
Q ss_pred --------ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcc
Q 048418 610 --------VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEW 681 (798)
Q Consensus 610 --------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 681 (798)
.+.. +++|++|++++|.+.+..+..++.+++|+.|++++|.+++. ++..++.+++|++|++++|.....+
T Consensus 453 ~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 453 MLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp CCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred cccCcCCHHHcC-CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHHhcCCCCCEEECCCCcccCcC
Confidence 1222 45555555555555555555555555555555555555442 2344445555555555555443344
Q ss_pred eecCCcccccceeeEeeCCC
Q 048418 682 TMGTGAMPKLEFLIINPCAY 701 (798)
Q Consensus 682 ~~~~~~l~~L~~L~l~~c~~ 701 (798)
|..++.+++|+.|++++|+.
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEE
T ss_pred CHHHcCCCCCCEEECCCCcc
Confidence 54455555555555555443
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.95 E-value=1.3e-29 Score=294.89 Aligned_cols=208 Identities=21% Similarity=0.249 Sum_probs=167.0
Q ss_pred ceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccccc-cce---------------------
Q 048418 160 DMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDC-HAW--------------------- 217 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~w--------------------- 217 (798)
..|||+.++++|.++|...+ .++||+|+||||+||||||+++|++.+++.+|+. ++|
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35999999999999998643 3899999999999999999999998788888986 666
Q ss_pred -------------------------------------EEEEEEECCCChhhHHHHhhhcCCCCCCcEEEEEeeeccccc-
Q 048418 218 -------------------------------------RYLIVFDNVWRISAWDVIRKILPDNQNGSRVLITLAQIEIVT- 259 (798)
Q Consensus 218 -------------------------------------r~LivlDdvw~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~- 259 (798)
|+||||||||+.+.|+.+. +|||||||||++.++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh
Confidence 5899999999999998763 6999999999999884
Q ss_pred ---ccccc-------------------------hhhhhcccee--------eccCcccC---CcCCCCchHHHhhhccCC
Q 048418 260 ---SFQFE-------------------------NGENIGLDFV--------PTGGPLRA---TYQGWPFHILYHGSISLE 300 (798)
Q Consensus 260 ---~~~~~-------------------------~l~~i~~~i~--------~~g~~L~~---~~~~W~~~~~~l~~~~~~ 300 (798)
...|+ ...++..+|. ++|+.|+. +.++|+ .. ..
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~---~~-----~~ 352 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HV-----NC 352 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHH---HC-----SC
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHh---cC-----Ch
Confidence 11221 1122233333 55666654 334555 32 13
Q ss_pred ccHHHHHhccccccccccCCCCCCc-hHHHhHhccCCCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCccee
Q 048418 301 ENIDEVLTMSLGLQCVIYCMLPFCL-KPCFLYFSVFPAHLEISTRQLYQLWIAEGFISDNNEATAEKYLEQLINRGFVEA 379 (798)
Q Consensus 301 ~~i~~~l~~s~~~~~~~y~~L~~~l-k~cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~~~~~~~~L~~~~ll~~ 379 (798)
..+..+|++| |+.||+++ |+||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++.
T Consensus 353 ~~I~aaLelS-------Yd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 353 DKLTTIIESS-------LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHHHHHHHH-------HHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSB
T ss_pred hHHHHHHHHH-------HHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEE
Confidence 4599999999 99999999 99999999999999999999999999987 2458899999999999998
Q ss_pred eccCCCCceeEEEcCcchHHHH
Q 048418 380 NKRRAGGTINTCSIPGCCHPVL 401 (798)
Q Consensus 380 ~~~~~~g~~~~~~mHdli~dla 401 (798)
.. ...+|+|||++++++
T Consensus 420 d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp CS-----SSSEEBCCCHHHHHH
T ss_pred eC-----CCCEEEehHHHHHHh
Confidence 42 224799999999966
No 6
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=9.7e-28 Score=271.35 Aligned_cols=316 Identities=19% Similarity=0.201 Sum_probs=231.0
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
.+++++|.+.++.... ++ .+..+++|++|++++|.++.+|. ++.+++|++|++++|.+..+++ + +++++|+
T Consensus 45 l~~l~~L~l~~~~i~~----l~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~ 115 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS----ID--GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLT 115 (466)
T ss_dssp HHTCCEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCC
T ss_pred hccccEEecCCCCCcc----Cc--chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCC
Confidence 5788888887776532 22 26778899999999998887776 8889999999999998888877 5 8999999
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchh
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY 576 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 576 (798)
+|++++|.+..+|. +.++++|++|++++|.+.. +|.++.+++|+.+.+......... ++++++|+.|+++++.
T Consensus 116 ~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L~l~~n~--- 188 (466)
T 1o6v_A 116 GLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNK--- 188 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC--CGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEEECCSSC---
T ss_pred EEECCCCCCCCChH-HcCCCCCCEEECCCCccCC--ChhhccCCcccEeecCCcccCchh-hccCCCCCEEECcCCc---
Confidence 99999998888876 8889999999999988764 556777777777777644444455 7778888888888773
Q ss_pred hhhHHHhccCCCCCCEEEEecCCC--------CCCCceeee---------ecCCCCCCeeEEEEEeccCCCCCccccccC
Q 048418 577 QFLLSQSLCRLSCLESLKLVNESK--------MPAFSKIVL---------VEYQFPPRLTHLSFSNTELMEDPMPALEKM 639 (798)
Q Consensus 577 ~~~l~~~l~~l~~L~~L~l~~n~i--------~~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l 639 (798)
...+ ..+..+++|+.|++++|.+ +++|+.|.+ .+.. +++|++|++++|.+.+.. .+..+
T Consensus 189 l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~-l~~L~~L~l~~n~l~~~~--~~~~l 264 (466)
T 1o6v_A 189 VSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-LTNLTDLDLANNQISNLA--PLSGL 264 (466)
T ss_dssp CCCC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGG-CTTCSEEECCSSCCCCCG--GGTTC
T ss_pred CCCC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhc-CCCCCEEECCCCccccch--hhhcC
Confidence 1122 2366777888888877653 345665555 2334 678888888888775432 37788
Q ss_pred cccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEE
Q 048418 640 PLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFD 719 (798)
Q Consensus 640 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 719 (798)
++|+.|++++|.+.+.. . +..+++|+.|++++|. +..++. ++.+++|+.|++++|......| +..+++|+.|+
T Consensus 265 ~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 265 TKLTELKLGANQISNIS--P-LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp TTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCEEECCCCccCccc--c-ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 88888888877776632 2 5678888888888874 454443 6778888888888887554333 66788888888
Q ss_pred EecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCCCccccc
Q 048418 720 CWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKL 768 (798)
Q Consensus 720 l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L 768 (798)
+++|+.. ..+.+..+++|+.+++++|.+++..| +..+++|
T Consensus 338 l~~n~l~-------~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 338 FYNNKVS-------DVSSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp CCSSCCC-------CCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred CCCCccC-------CchhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 8888632 33556778888888888888887766 5666655
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.5e-27 Score=279.29 Aligned_cols=365 Identities=16% Similarity=0.066 Sum_probs=253.1
Q ss_pred cccCCCCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-cCcccccCcCccceEEecCCCccccChhhhh
Q 048418 412 YLDDYDSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLKSLPPSLLS 490 (798)
Q Consensus 412 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~ 490 (798)
++..+.++++.|.+.++... .+.+..|.++++|++|+|++|.+. ..|..|+++++|++|++++|.+..+++..|+
T Consensus 27 iP~~l~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 27 IPGTLPNSTECLEFSFNVLP----TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp CCTTSCTTCCEEECTTCCCS----EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CcCCCCCcCcEEEccCCccC----cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 33344778999999887663 445567889999999999999988 4577899999999999999999876444449
Q ss_pred CCCCCcEeeccccccccc-hhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCC---CcchhhhcCCCCCCC-
Q 048418 491 NLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHP---CCCTEDILGRLPNLR- 565 (798)
Q Consensus 491 ~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~---~~~~~~~l~~l~~L~- 565 (798)
++++|++|++++|.+..+ |..++++++|++|++++|.+.....|.+..+++|+.+++... ...+.. ++.+++|+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 181 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATN 181 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH-HHTTTTCCS
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh-hhhhcccce
Confidence 999999999999988887 667889999999999999987655564445888888888742 222444 77778887
Q ss_pred -eEEEecccchhhhhH----------------------------------------------------------------
Q 048418 566 -NLRIWGDLSYYQFLL---------------------------------------------------------------- 580 (798)
Q Consensus 566 -~L~l~~~~~~~~~~l---------------------------------------------------------------- 580 (798)
.|+++++. .....
T Consensus 182 l~L~l~~n~--l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 182 LSLNLNGND--IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp EEEECTTCC--CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred eEEecCCCc--cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 66666653 11100
Q ss_pred -----------HHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEee
Q 048418 581 -----------SQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQ 649 (798)
Q Consensus 581 -----------~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 649 (798)
+..+..+++|+.|++++|. ++.++.++.. +++|++|++++|.+....+..++.+++|+.|++++
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATH----LSELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSC----CSCCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCc----cCCCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 1112333444444444433 2222113444 67888888888877665566777888888888887
Q ss_pred ccccCCeeeeCCCCCccccEEEeecCCCCCcc---eecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHH
Q 048418 650 NSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEW---TMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPE 726 (798)
Q Consensus 650 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l---~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~ 726 (798)
|.+.+......+..+++|++|++++|. +... +..++.+++|++|++++|......|..+..+++|+.|++++|...
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 776654444456778888888888874 3433 456778888888888888766666777888888888888888522
Q ss_pred HHHHHhcC-CCcccCCCceeEeeccccccccCCCCCCCcccccchh-hh-------------hHHHhhhhhcCccccccc
Q 048418 727 LRQKLREF-EDKEQSIPPLAHFMEYESQITETEPPSLPSQRKLKFG-LR-------------TWEWNEERQQNDYKDCHL 791 (798)
Q Consensus 727 ~~~~l~~~-~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L~~~-~~-------------~~~~~~~~~~l~~~~~~~ 791 (798)
... ...+..+++|+.|++++|.+++..|..+..+++|+.- +. ...-..++..+++++|..
T Consensus 414 -----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 414 -----VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp -----CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred -----CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 011 2236678889999999998888888777777666411 11 112224566777777766
Q ss_pred CcC
Q 048418 792 QGH 794 (798)
Q Consensus 792 ~~~ 794 (798)
++.
T Consensus 489 ~~~ 491 (606)
T 3t6q_A 489 SSI 491 (606)
T ss_dssp CEE
T ss_pred Ccc
Confidence 543
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=277.26 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=51.8
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCc-ccccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
+++|++|.+.++.. ..+.+..|.++++|++|+|++|.++.+| ..|+.+++|++|++++|.++.+|...++++++|
T Consensus 51 l~~L~~L~Ls~n~i----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 51 FPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp CSSCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred CCCceEEECCCCcC----CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 44455555444432 1222334445555555555555544332 345555555555555555554444212555555
Q ss_pred cEeecccccccc--chhhhcccccCceeccCCccc
Q 048418 496 YTLDMPFSYIDH--TADEFWKMNKLKHLNFGSITL 528 (798)
Q Consensus 496 ~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~i 528 (798)
++|++++|.+.. +|..++++++|++|++++|.+
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 555555554443 355555555555555555544
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.1e-27 Score=278.01 Aligned_cols=149 Identities=15% Similarity=0.056 Sum_probs=88.0
Q ss_pred CCCeeEEEEEeccCCCC--CccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce-ecCCccccc
Q 048418 615 PPRLTHLSFSNTELMED--PMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGTGAMPKL 691 (798)
Q Consensus 615 l~~L~~L~L~~~~l~~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L 691 (798)
+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|......+ ..++.+++|
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc--chhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 44555555555544322 13444555555555555555443 23445566677777776664333333 345667777
Q ss_pred ceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCCCcccccc
Q 048418 692 EFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKLK 769 (798)
Q Consensus 692 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L~ 769 (798)
+.|++++|......|..+..+++|+.|++++|... . ...+..+.++++|+.|++++|.+++..|..+.++++|+
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK--D--NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG--G--GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC--C--cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 77777777766666666777777777777777522 0 01234456777777777777777777777676666653
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.7e-27 Score=280.75 Aligned_cols=334 Identities=14% Similarity=0.107 Sum_probs=236.7
Q ss_pred CCCceEEEEecCCCCCC--Cc------------hhhHHH-hhccCceeEEEecCcccc-cCcccccCcCccceEEecCCC
Q 048418 417 DSHLHSLLYFTSESRHI--DP------------IDWEKI-CEMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPS 480 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~--~~------------~~~~~~-~~~~~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~ 480 (798)
+++|+.|.+.++..... .. .+++.+ |.++++|++|+|++|.+. .+|..++++++|++|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 78888888887765210 00 022222 348888888888888865 788888888888888888887
Q ss_pred -ccc--cChhhhhCCC-------CCcEeeccccccccchh--hhcccccCceeccCCcccCCCCCCCCCCCCCcceeecC
Q 048418 481 -LKS--LPPSLLSNLP-------NLYTLDMPFSYIDHTAD--EFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISAL 548 (798)
Q Consensus 481 -i~~--lp~~i~~~L~-------~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~ 548 (798)
++. +|..+ +++. +|++|++++|.+..+|. .++++++|++|++++|.+. .+|.++++++|+.+++.
T Consensus 527 ~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEECC
T ss_pred CcccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEECc
Confidence 774 77776 6665 88888888888888888 8888888888888888886 57777788888888887
Q ss_pred C--CCcchhhhcCCCCC-CCeEEEecccchhhhhHHHhccCCC--CCCEEEEecCCCCCCCceeeeecCCC-CCCeeEEE
Q 048418 549 H--PCCCTEDILGRLPN-LRNLRIWGDLSYYQFLLSQSLCRLS--CLESLKLVNESKMPAFSKIVLVEYQF-PPRLTHLS 622 (798)
Q Consensus 549 ~--~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~l~~l~--~L~~L~l~~n~i~~~L~~L~l~~~~~-l~~L~~L~ 622 (798)
. ....+.. +..+++ |+.|++++|. ...+|..+..++ +|+.|++++|.+...+..+...+..+ +++|+.|+
T Consensus 604 ~N~l~~lp~~-l~~l~~~L~~L~Ls~N~---L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 604 YNQIEEIPED-FCAFTDQVEGLGFSHNK---LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp SSCCSCCCTT-SCEECTTCCEEECCSSC---CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred CCccccchHH-HhhccccCCEEECcCCC---CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 4 2244555 778888 8888888883 235666666554 38888888876411111111111210 46899999
Q ss_pred EEeccCCCCCccc-cccCcccceEEEeeccccCCeeeeCC--------CCCccccEEEeecCCCCCcceecCC--ccccc
Q 048418 623 FSNTELMEDPMPA-LEKMPLLQVLKLKQNSYSGRKLTCGS--------DGFPNLKVLHLKSMLWLEEWTMGTG--AMPKL 691 (798)
Q Consensus 623 L~~~~l~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~--------~~~~~L~~L~L~~~~~l~~l~~~~~--~l~~L 691 (798)
+++|.+.. .+.. +..+++|+.|+|++|.+.. ++... .++++|+.|+|++| .+..+|..+. .+++|
T Consensus 680 Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 680 LSYNEIQK-FPTELFATGSPISTIILSNNLMTS--IPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYL 755 (876)
T ss_dssp CCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSC--CCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTC
T ss_pred ccCCcCCc-cCHHHHccCCCCCEEECCCCcCCc--cChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCc
Confidence 99998873 4444 4578999999999887763 33322 12348999999988 5668887776 88999
Q ss_pred ceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHH-hcCCCcccCCCceeEeeccccccccCCCCCCC
Q 048418 692 EFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKL-REFEDKEQSIPPLAHFMEYESQITETEPPSLP 763 (798)
Q Consensus 692 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l-~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~ 763 (798)
+.|++++|.... +|..+.++++|+.|+|++|+..-...+ ...+..+.++++|+.|++++|.+ +.+|..+.
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 999999987554 888888999999999987540000001 12445677889999999999998 67776543
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.3e-27 Score=277.67 Aligned_cols=205 Identities=15% Similarity=0.109 Sum_probs=147.9
Q ss_pred cCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCC----------CCCCceeee------------ecCCCC
Q 048418 558 LGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK----------MPAFSKIVL------------VEYQFP 615 (798)
Q Consensus 558 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i----------~~~L~~L~l------------~~~~~l 615 (798)
++.+++|+.|+++++ ....+|..+..+++|++|++++|.+ +++|+.|.+ .+.. +
T Consensus 274 ~~~l~~L~~L~l~~n---~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT---HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN-L 349 (606)
T ss_dssp TTTCTTCSEEECTTS---CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT-C
T ss_pred hccccCCCEEeccCC---ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc-c
Confidence 666778888888887 3336677777788888888887653 345555555 1334 7
Q ss_pred CCeeEEEEEeccCCCCC--ccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce-ecCCcccccc
Q 048418 616 PRLTHLSFSNTELMEDP--MPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGTGAMPKLE 692 (798)
Q Consensus 616 ~~L~~L~L~~~~l~~~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~ 692 (798)
++|++|++++|.+.+.. +..++.+++|+.|++++|.+.+. .+..+..+++|+.|++++|......+ ..+..+++|+
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 78888888888776543 55677888888888887776542 34556778888888888875433333 3377888999
Q ss_pred eeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCCCcccccc
Q 048418 693 FLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKLK 769 (798)
Q Consensus 693 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L~ 769 (798)
.|++++|......|..+..+++|++|++++|+.. +........+..+++|+.|++++|.+++..|..+.++++|+
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP--KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG--GGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC--ccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 9999988877767778888999999999998632 00011234577888999999999999988888888877774
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=2.5e-27 Score=277.33 Aligned_cols=335 Identities=16% Similarity=0.087 Sum_probs=221.5
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
+++|++|.+.++.. ..+.+..|.++++|++|+|++|.++.+ |..|+++++|++|++++|.+..+|+..++++++|
T Consensus 55 l~~L~~L~Ls~n~l----~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 55 FSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp CTTCCEEECTTCCC----CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred CccCcEEeCCCCcc----cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 67788888777654 234455677788888888888887754 6778888888888888888877763333888888
Q ss_pred cEeeccccccc--cchhhhcccccCceeccCCcccCCCCCC-CCCCCC---------------------------Cccee
Q 048418 496 YTLDMPFSYID--HTADEFWKMNKLKHLNFGSITLPAHPGK-YCGSLE---------------------------NLNFI 545 (798)
Q Consensus 496 ~~L~L~~~~l~--~lp~~i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~---------------------------~L~~l 545 (798)
++|++++|.+. .+|..++++++|++|++++|.+... .| .++.+. +|+.+
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE-CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec-ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 88888888766 3677788888888888888766531 11 222111 22222
Q ss_pred ecCCCC--------------------------------------------------------------------------
Q 048418 546 SALHPC-------------------------------------------------------------------------- 551 (798)
Q Consensus 546 ~~~~~~-------------------------------------------------------------------------- 551 (798)
++....
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 289 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence 222100
Q ss_pred --------cchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCC--------CCCCceeee------
Q 048418 552 --------CCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK--------MPAFSKIVL------ 609 (798)
Q Consensus 552 --------~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i--------~~~L~~L~l------ 609 (798)
..+.. +..+++|+.|++++|. . ..+| .+ .+++|+.|++++|.. +++|+.|.+
T Consensus 290 L~l~~~~~~~l~~-l~~~~~L~~L~l~~n~--l-~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 290 MSLAGVSIKYLED-VPKHFKWQSLSIIRCQ--L-KQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEEESCCCCCCCC-CCTTCCCSEEEEESCC--C-SSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEE
T ss_pred EEecCccchhhhh-ccccccCCEEEccccc--C-cccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccC
Confidence 00112 4445566667776662 2 4455 34 677777777777521 456666665
Q ss_pred -------ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce
Q 048418 610 -------VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT 682 (798)
Q Consensus 610 -------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 682 (798)
.+.. +++|++|++++|.+.. .+..+..+++|+.|++++|.+.+......+..+++|++|++++|......|
T Consensus 364 ~~~~~~~~~~~-~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 364 FSGCCSYSDLG-TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEECCHHHHC-CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCcchhhhhcc-CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 1223 6888888888887654 346777888888888888777664322456677888888888876544556
Q ss_pred ecCCcccccceeeEeeCCCCC-CCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCC
Q 048418 683 MGTGAMPKLEFLIINPCAYLK-KMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPS 761 (798)
Q Consensus 683 ~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~ 761 (798)
..++.+++|+.|++++|.... .+|..+..+++|+.|++++|... ...+..+..+++|+.|++++|.+++..|..
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-----QISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC-----ccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 667778888888888887555 25777778888888888887522 113344567778888888888888777777
Q ss_pred CCcccccc
Q 048418 762 LPSQRKLK 769 (798)
Q Consensus 762 l~~l~~L~ 769 (798)
+.++++|+
T Consensus 517 ~~~l~~L~ 524 (606)
T 3vq2_A 517 YNQLYSLS 524 (606)
T ss_dssp TTTCTTCC
T ss_pred ccCCCcCC
Confidence 77666653
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.4e-27 Score=278.22 Aligned_cols=308 Identities=13% Similarity=0.124 Sum_probs=182.4
Q ss_pred ccCceeEEEecCcccc-cCcccccCcCccceEEecCCC-cc--ccChhhhhCC------CCCcEeeccccccccchh--h
Q 048418 444 MFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPS-LK--SLPPSLLSNL------PNLYTLDMPFSYIDHTAD--E 511 (798)
Q Consensus 444 ~~~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~-i~--~lp~~i~~~L------~~L~~L~L~~~~l~~lp~--~ 511 (798)
++++|++|+|++|.+. .+|..++++++|++|++++|. ++ .+|..+ +++ ++|++|++++|.+..+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhh
Confidence 5666666666666544 556666666666666666665 55 355555 554 666666666665556665 5
Q ss_pred hcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCC--CcchhhhcCCCCC-CCeEEEecccchhhhhHHHhccCCC
Q 048418 512 FWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHP--CCCTEDILGRLPN-LRNLRIWGDLSYYQFLLSQSLCRLS 588 (798)
Q Consensus 512 i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~l~~~l~~l~ 588 (798)
++++++|++|++++|.+. +.+|.++++++|+.+++... ...+.. +..+++ |+.|++++|. ...+|..+..++
T Consensus 326 l~~l~~L~~L~L~~N~l~-g~ip~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~---l~~lp~~~~~~~ 400 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNK---LKYIPNIFDAKS 400 (636)
T ss_dssp HTTCTTCCEEECCSCCCE-EECCCCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSC---CSSCCSCCCTTC
T ss_pred hccCCCCCEEeCcCCcCc-cchhhhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCc---Ccccchhhhhcc
Confidence 666666666666666554 23444555555555555531 123333 555555 6666666652 224444444433
Q ss_pred --CCCEEEEecCCC----CCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCC-
Q 048418 589 --CLESLKLVNESK----MPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGS- 661 (798)
Q Consensus 589 --~L~~L~l~~n~i----~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~- 661 (798)
+|+.|++++|.+ |..+......... +++|++|++++|.+.......+..+++|+.|++++|.++. ++...
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~-~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~ 477 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK-GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE--IPKNSL 477 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCC-CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB--CCSSSS
T ss_pred cCccCEEECcCCcCCCcchhhhccccccccc-CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC--cCHHHh
Confidence 566666665542 1222100000002 5688888888888764333345568888888888877762 23221
Q ss_pred C-------CCccccEEEeecCCCCCcceecCC--cccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHH-
Q 048418 662 D-------GFPNLKVLHLKSMLWLEEWTMGTG--AMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKL- 731 (798)
Q Consensus 662 ~-------~~~~L~~L~L~~~~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l- 731 (798)
. .+++|+.|+|++| .+..+|..+. .+++|+.|++++|.... +|..+.++++|+.|++++|+..-...+
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccc
Confidence 1 2338888888887 4557777766 88888888888887554 888888888888888865430000001
Q ss_pred hcCCCcccCCCceeEeeccccccccCCCCCCC
Q 048418 732 REFEDKEQSIPPLAHFMEYESQITETEPPSLP 763 (798)
Q Consensus 732 ~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~ 763 (798)
...+..+.++++|+.|++++|.+ +.+|..+.
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 12444667788888888888888 56666544
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=266.31 Aligned_cols=332 Identities=17% Similarity=0.124 Sum_probs=203.8
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
.++++.|.+.++... .+++..|..+++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|.. .+++|
T Consensus 20 ~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L 92 (520)
T 2z7x_B 20 SQKTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNL 92 (520)
T ss_dssp CTTCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCC
T ss_pred cccccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCc
Confidence 578888888877653 34456678888888888888888744 67788888888888888888888774 78888
Q ss_pred cEeecccccccc--chhhhcccccCceeccCCcccCCCCCCCCCCCCCc--ceeecCCC-----Ccc-------------
Q 048418 496 YTLDMPFSYIDH--TADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENL--NFISALHP-----CCC------------- 553 (798)
Q Consensus 496 ~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L--~~l~~~~~-----~~~------------- 553 (798)
++|++++|.+.. +|..++++++|++|++++|.+... .+..++.| +.+++... ...
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~ 169 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEE
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccccccccccccccccccceEE
Confidence 888888887765 467888888888888888776531 12222222 33333210 001
Q ss_pred -------------------------------------------hhhhcCCCCCCCeEEEecccc----------------
Q 048418 554 -------------------------------------------TEDILGRLPNLRNLRIWGDLS---------------- 574 (798)
Q Consensus 554 -------------------------------------------~~~~l~~l~~L~~L~l~~~~~---------------- 574 (798)
+.. ++.+++|+.|+++++.-
T Consensus 170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAK-LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHG-GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhh-hccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 112 33344444444443310
Q ss_pred ---------hhhhhHHHhc-----cCCCCCCEEEEecCCC--C----------CCCceeee--------e-cCCCCCCee
Q 048418 575 ---------YYQFLLSQSL-----CRLSCLESLKLVNESK--M----------PAFSKIVL--------V-EYQFPPRLT 619 (798)
Q Consensus 575 ---------~~~~~l~~~l-----~~l~~L~~L~l~~n~i--~----------~~L~~L~l--------~-~~~~l~~L~ 619 (798)
...+.+|..+ ..+++|+.++++.|.+ | .+++.|.+ . ... +++|+
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-l~~L~ 327 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK-ISPFL 327 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS-CCCCC
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh-CCccc
Confidence 0111122222 2223333333332221 1 12333333 0 133 67777
Q ss_pred EEEEEeccCCCCCccccccCcccceEEEeeccccCC-eeeeCCCCCccccEEEeecCCCCCcceec-CCcccccceeeEe
Q 048418 620 HLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGR-KLTCGSDGFPNLKVLHLKSMLWLEEWTMG-TGAMPKLEFLIIN 697 (798)
Q Consensus 620 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~ 697 (798)
+|++++|.+.+..+..++.+++|+.|++++|.+.+. .++..+..+++|++|++++|.....+|.. +..+++|+.|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 777777777766677777777778887777776641 12344566777888888777543336543 5667777777777
Q ss_pred eCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCC-CCcccccc
Q 048418 698 PCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPS-LPSQRKLK 769 (798)
Q Consensus 698 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~-l~~l~~L~ 769 (798)
+|.....+|..+. ++|+.|++++|.. ...+..+..+++|+.|++++|.++. +|.. +..+++|+
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l------~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKI------KSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQ 471 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCC------CCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCcc------cccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCccc
Confidence 7776555555443 6778888887752 2334445578899999999999885 4544 76666663
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=8e-27 Score=269.69 Aligned_cols=175 Identities=18% Similarity=0.115 Sum_probs=122.4
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
.+++++|.+.++... ...+..|.++++|++|++++|.++.+ |..++.+++|++|++++|.++.+|+..|+++++|
T Consensus 25 ~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 678888888887652 33345678888899999998888844 4678888889999999888888887744888889
Q ss_pred cEeecccccccc--chhhhcccccCceeccCCcccCCCCCC-CCCCCCCcceeecCC---CCcchhhhcCCCCCCCeEEE
Q 048418 496 YTLDMPFSYIDH--TADEFWKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISALH---PCCCTEDILGRLPNLRNLRI 569 (798)
Q Consensus 496 ~~L~L~~~~l~~--lp~~i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~---~~~~~~~~l~~l~~L~~L~l 569 (798)
++|++++|.+.. .|..++++++|++|++++|.+.....+ .++++++|+.+++.. ....+.. ++.+++|+.|++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l 179 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTL 179 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEec
Confidence 999998887774 366788888888888888874322223 677888888887763 2223445 667777777777
Q ss_pred ecccchhhhhHHHh-ccCCCCCCEEEEecCC
Q 048418 570 WGDLSYYQFLLSQS-LCRLSCLESLKLVNES 599 (798)
Q Consensus 570 ~~~~~~~~~~l~~~-l~~l~~L~~L~l~~n~ 599 (798)
+++. ...++.. +..+++|+.|++++|.
T Consensus 180 ~~n~---~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 180 HLSE---SAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp ECSB---STTHHHHHHHSTTTBSEEEEESCB
T ss_pred ccCc---ccccchhhHhhcccccEEEccCCc
Confidence 7663 1222322 2345666666666543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=4.4e-27 Score=275.87 Aligned_cols=310 Identities=15% Similarity=0.129 Sum_probs=245.0
Q ss_pred HHHhhccCceeEEEecCccccc------------------Cccccc--CcCccceEEecCCCcc-ccChhhhhCCCCCcE
Q 048418 439 EKICEMFKLLRVLDLGSLVLIQ------------------YPSGIE--NLFLLRYLKLNIPSLK-SLPPSLLSNLPNLYT 497 (798)
Q Consensus 439 ~~~~~~~~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~ 497 (798)
+..+.++++|++|+|++|.++. +|..++ ++++|++|++++|.+. .+|..+ +++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCE
Confidence 3567889999999999999886 999998 9999999999999866 788887 99999999
Q ss_pred eeccccc-ccc--chhhhccc------ccCceeccCCcccCCCCCCC---CCCCCCcceeecCCC---CcchhhhcCCCC
Q 048418 498 LDMPFSY-IDH--TADEFWKM------NKLKHLNFGSITLPAHPGKY---CGSLENLNFISALHP---CCCTEDILGRLP 562 (798)
Q Consensus 498 L~L~~~~-l~~--lp~~i~~L------~~L~~L~L~~~~i~~~~~p~---i~~L~~L~~l~~~~~---~~~~~~~l~~l~ 562 (798)
|++++|. +.. +|..++++ ++|++|++++|.+. .+|. ++++++|+.+++... +..+ . ++.++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~ 353 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEI 353 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCC
Confidence 9999997 874 89888887 99999999999987 4664 889999999998752 2334 5 88889
Q ss_pred CCCeEEEecccchhhhhHHHhccCCCC-CCEEEEecCCCCCCCceeeeecCCC-CCCeeEEEEEeccCCCCCccccc---
Q 048418 563 NLRNLRIWGDLSYYQFLLSQSLCRLSC-LESLKLVNESKMPAFSKIVLVEYQF-PPRLTHLSFSNTELMEDPMPALE--- 637 (798)
Q Consensus 563 ~L~~L~l~~~~~~~~~~l~~~l~~l~~-L~~L~l~~n~i~~~L~~L~l~~~~~-l~~L~~L~L~~~~l~~~~~~~l~--- 637 (798)
+|+.|++++|. ...+|..+..+++ |+.|++++|. ++.++-++... +++|++|++++|.+.+..+..+.
T Consensus 354 ~L~~L~L~~N~---l~~lp~~l~~l~~~L~~L~Ls~N~----l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 354 KLASLNLAYNQ---ITEIPANFCGFTEQVENLSFAHNK----LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp EESEEECCSSE---EEECCTTSEEECTTCCEEECCSSC----CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred CCCEEECCCCc---cccccHhhhhhcccCcEEEccCCc----CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 99999999983 3377788888888 9999999877 33332233331 45899999999998887777777
Q ss_pred ----cCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCc--------ccccceeeEeeCCCCCCC
Q 048418 638 ----KMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGA--------MPKLEFLIINPCAYLKKM 705 (798)
Q Consensus 638 ----~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~--------l~~L~~L~l~~c~~l~~l 705 (798)
.+++|+.|++++|.+.. .....+..+++|+.|++++|. +..+|..... +++|+.|++++|... .+
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC
T ss_pred cccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCC-cc
Confidence 78899999999888874 222223458899999999984 5566654332 338999999998755 78
Q ss_pred CccCC--CCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeec------cccccccCCCCCCCcccccc
Q 048418 706 PEQLW--CIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFME------YESQITETEPPSLPSQRKLK 769 (798)
Q Consensus 706 p~~l~--~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l------~~n~l~~~~p~~l~~l~~L~ 769 (798)
|..+. .+++|+.|++++|.. ...+..+.++++|+.|++ ++|.+.+.+|..+.++++|+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l------~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSF------SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCC------SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred ChhhhhccCCCcCEEECCCCCC------CCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 88886 899999999999963 234556778999999999 56888899998888888774
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.3e-26 Score=252.66 Aligned_cols=308 Identities=15% Similarity=0.122 Sum_probs=251.0
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCc-ccccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
.+++|.|.+.++.. ..++..+|..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+|+..|+++++|
T Consensus 44 l~~l~~l~l~~~~l----~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCch----hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 78999999988765 3466677899999999999999998655 479999999999999999998877655999999
Q ss_pred cEeeccccccccchhh-hcccccCceeccCCcccCCCCCC-CCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEeccc
Q 048418 496 YTLDMPFSYIDHTADE-FWKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 573 (798)
Q Consensus 496 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 573 (798)
++|++++|.+..+|.. +.++++|++|++++|.+.. ..| .++.+++|+.+++......... ++.+++|+.|+++++.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL 197 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccc-cccccccceeeccccc
Confidence 9999999999999877 4899999999999999863 234 6888999999988854333334 6678889999998873
Q ss_pred chhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeecccc
Q 048418 574 SYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYS 653 (798)
Q Consensus 574 ~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 653 (798)
. ..+...++|+.|++++|. +..+.. .. +++|++|++++|.+++ .+.++.+++|+.|++++|.+.
T Consensus 198 --l-----~~~~~~~~L~~L~l~~n~----l~~~~~--~~-~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 198 --L-----STLAIPIAVEELDASHNS----INVVRG--PV-NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp --C-----SEEECCSSCSEEECCSSC----CCEEEC--CC-CSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred --c-----cccCCCCcceEEECCCCe----eeeccc--cc-cccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCC
Confidence 1 123455688999988866 444422 22 6899999999999865 368899999999999998887
Q ss_pred CCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhc
Q 048418 654 GRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLRE 733 (798)
Q Consensus 654 ~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~ 733 (798)
+. .+..+..+++|+.|++++| .+..++.....+|+|+.|++++|. +..+|..+..+++|+.|++++|+..
T Consensus 262 ~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~------- 331 (390)
T 3o6n_A 262 KI-MYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIV------- 331 (390)
T ss_dssp EE-ESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCC-------
T ss_pred Cc-ChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCccc-------
Confidence 63 3566788999999999997 677888888899999999999996 5578888888999999999999732
Q ss_pred CCCcccCCCceeEeeccccccccC
Q 048418 734 FEDKEQSIPPLAHFMEYESQITET 757 (798)
Q Consensus 734 ~~~~i~~l~~L~~l~l~~n~l~~~ 757 (798)
.. .+..+++|+.+++++|.+...
T Consensus 332 ~~-~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 332 TL-KLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CC-CCCTTCCCSEEECCSSCEEHH
T ss_pred ee-CchhhccCCEEEcCCCCccch
Confidence 22 266889999999999998764
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.3e-26 Score=274.79 Aligned_cols=310 Identities=13% Similarity=0.137 Sum_probs=251.9
Q ss_pred hHHHhhccCceeEEEecCccccc------------------Cccccc--CcCccceEEecCCCcc-ccChhhhhCCCCCc
Q 048418 438 WEKICEMFKLLRVLDLGSLVLIQ------------------YPSGIE--NLFLLRYLKLNIPSLK-SLPPSLLSNLPNLY 496 (798)
Q Consensus 438 ~~~~~~~~~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~ 496 (798)
++..+.++++|++|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..+ +++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCC
Confidence 44568999999999999999987 999988 9999999999999865 889888 9999999
Q ss_pred Eeeccccc-ccc--chhhhcccc-------cCceeccCCcccCCCCCCC---CCCCCCcceeecCCC--CcchhhhcCCC
Q 048418 497 TLDMPFSY-IDH--TADEFWKMN-------KLKHLNFGSITLPAHPGKY---CGSLENLNFISALHP--CCCTEDILGRL 561 (798)
Q Consensus 497 ~L~L~~~~-l~~--lp~~i~~L~-------~L~~L~L~~~~i~~~~~p~---i~~L~~L~~l~~~~~--~~~~~~~l~~l 561 (798)
+|+|++|. +.. +|..+++++ +|++|++++|.+. .+|. ++++++|+.+++... ...+ . ++.+
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~-~~~L 594 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-A-FGTN 594 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-C-CCTT
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-h-hcCC
Confidence 99999997 875 899888887 9999999999997 5775 889999999999852 2333 6 8999
Q ss_pred CCCCeEEEecccchhhhhHHHhccCCCC-CCEEEEecCCCCCCCceeeeecCCC-CCCeeEEEEEeccCCCCCcc---cc
Q 048418 562 PNLRNLRIWGDLSYYQFLLSQSLCRLSC-LESLKLVNESKMPAFSKIVLVEYQF-PPRLTHLSFSNTELMEDPMP---AL 636 (798)
Q Consensus 562 ~~L~~L~l~~~~~~~~~~l~~~l~~l~~-L~~L~l~~n~i~~~L~~L~l~~~~~-l~~L~~L~L~~~~l~~~~~~---~l 636 (798)
++|+.|++++|. .. .+|..+..+++ |+.|++++|. ++.++-++... .++|+.|++++|.+.+..+. .+
T Consensus 595 ~~L~~L~Ls~N~--l~-~lp~~l~~l~~~L~~L~Ls~N~----L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 595 VKLTDLKLDYNQ--IE-EIPEDFCAFTDQVEGLGFSHNK----LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp SEESEEECCSSC--CS-CCCTTSCEECTTCCEEECCSSC----CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred CcceEEECcCCc--cc-cchHHHhhccccCCEEECcCCC----CCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 999999999983 33 78888999998 9999999977 33332233330 34599999999998765432 22
Q ss_pred c--cCcccceEEEeeccccCCeeeeC-CCCCccccEEEeecCCCCCcceecCC--------cccccceeeEeeCCCCCCC
Q 048418 637 E--KMPLLQVLKLKQNSYSGRKLTCG-SDGFPNLKVLHLKSMLWLEEWTMGTG--------AMPKLEFLIINPCAYLKKM 705 (798)
Q Consensus 637 ~--~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~l~~l~~~~~--------~l~~L~~L~l~~c~~l~~l 705 (798)
+ .+++|+.|++++|.+.. ++.. +..+++|+.|+|++| .+..+|.... ++++|+.|++++|... .+
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~--lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQK--FPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCS--CCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred ccccCCCcCEEEccCCcCCc--cCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 3 45689999999998874 3433 347899999999998 5567765543 3459999999999754 79
Q ss_pred CccCC--CCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccc------cccccCCCCCCCcccccc
Q 048418 706 PEQLW--CIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYE------SQITETEPPSLPSQRKLK 769 (798)
Q Consensus 706 p~~l~--~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~------n~l~~~~p~~l~~l~~L~ 769 (798)
|..+. .+++|+.|+|++|.. ...+..+.++++|+.|++++ |.+.+.+|..+.++++|+
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L------~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCF------SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCC------SSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred hHHhhhccCCCcCEEEeCCCCC------CccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 99887 999999999999963 23455677899999999976 889999999999888874
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.3e-25 Score=266.49 Aligned_cols=152 Identities=17% Similarity=0.100 Sum_probs=81.6
Q ss_pred CCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeee---------------------------eCCCCCccc
Q 048418 615 PPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLT---------------------------CGSDGFPNL 667 (798)
Q Consensus 615 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~---------------------------~~~~~~~~L 667 (798)
+++|++|++++|.+.+..+..+..+++|+.|++++|.+....++ ..+..+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 67777777777777666666677777777777776543322111 122233444
Q ss_pred cEEEeecCCCCCcce-ecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeE
Q 048418 668 KVLHLKSMLWLEEWT-MGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAH 746 (798)
Q Consensus 668 ~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~ 746 (798)
+.|++++|.....++ ..+..+++|++|++++|......|..+..+++|+.|++++|... .+...+..+.++++|+.
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK---NVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB---CTTCSSCTTTTCTTCCE
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc---ccccCCcccccCCCCCE
Confidence 444444442222222 23334444444444444433323333444444444444444310 01113344667888888
Q ss_pred eeccccccccCCCCCCCcccccc
Q 048418 747 FMEYESQITETEPPSLPSQRKLK 769 (798)
Q Consensus 747 l~l~~n~l~~~~p~~l~~l~~L~ 769 (798)
|++++|.+++..|..+..+++|+
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~ 507 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLE 507 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCC
T ss_pred EECCCCCCCcCChhhhccccccC
Confidence 88888888877777777766663
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=8.1e-26 Score=245.33 Aligned_cols=302 Identities=17% Similarity=0.147 Sum_probs=163.8
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
++++++|.+.++.... + + .+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+ .++++|+
T Consensus 43 l~~L~~L~l~~~~i~~----~-~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~-~~l~~L~ 113 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS----I-Q-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-AL-QNLTNLR 113 (347)
T ss_dssp HTTCSEEECCSSCCCC----C-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG-TTCTTCS
T ss_pred cccccEEEEeCCcccc----c-h-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HH-cCCCcCC
Confidence 6777888877765532 1 1 25677888888888888777665 777888888888888777765 34 7888888
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCC-CcchhhhcCCCCCCCeEEEecccch
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHP-CCCTEDILGRLPNLRNLRIWGDLSY 575 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 575 (798)
+|++++|.+..+|. +..+++|++|++++|.... .++.+..+++|+.+++... ...... +..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-- 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-- 188 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCC-CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC--
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcc-cccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc--
Confidence 88888887777766 7778888888887775431 1224455555555555431 112222 4455555555555552
Q ss_pred hhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCC
Q 048418 576 YQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGR 655 (798)
Q Consensus 576 ~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 655 (798)
...++. +..+++|+.|++++|.+ ..+.. +.. +++|++|++++|.+.... .+..+++|+.|++++|.++..
T Consensus 189 -l~~~~~-~~~l~~L~~L~l~~n~l----~~~~~-~~~-~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 189 -IEDISP-LASLTSLHYFTAYVNQI----TDITP-VAN-MTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp -CCCCGG-GGGCTTCCEEECCSSCC----CCCGG-GGG-CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred -cccccc-ccCCCccceeecccCCC----CCCch-hhc-CCcCCEEEccCCccCCCc--chhcCCCCCEEECCCCccCCC
Confidence 111111 44455555555555431 11110 222 455555555555543221 145555555555555544431
Q ss_pred eeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCC
Q 048418 656 KLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFE 735 (798)
Q Consensus 656 ~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~ 735 (798)
..+..+++|+.|++++| .+..++ .+..+++|+.|++++|......|..+..+++|+.|++++|+.. ..
T Consensus 259 ---~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-------~~ 326 (347)
T 4fmz_A 259 ---NAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT-------DI 326 (347)
T ss_dssp ---GGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC-------CC
T ss_pred ---hhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc-------cc
Confidence 12344555555555554 233332 2444555555555555443333444445555555555555411 11
Q ss_pred CcccCCCceeEeecccccc
Q 048418 736 DKEQSIPPLAHFMEYESQI 754 (798)
Q Consensus 736 ~~i~~l~~L~~l~l~~n~l 754 (798)
..+..+++|+.+++++|.+
T Consensus 327 ~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 327 RPLASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGGGCTTCSEESSSCC--
T ss_pred cChhhhhccceeehhhhcc
Confidence 1244455555555555544
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.2e-25 Score=260.62 Aligned_cols=334 Identities=16% Similarity=0.100 Sum_probs=219.9
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
.++++.|.+.++... .+++..|.++++|++|+|++|.++.+ |..++.+++|++|++++|.++.+|.. .+++|
T Consensus 51 ~~~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L 123 (562)
T 3a79_B 51 PPRTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASL 123 (562)
T ss_dssp CTTCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTC
T ss_pred CCCcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccC
Confidence 678888888877653 34456678888888888888888854 66788888888888888888888874 78888
Q ss_pred cEeeccccccccch--hhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCC-----Ccchhh------------
Q 048418 496 YTLDMPFSYIDHTA--DEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHP-----CCCTED------------ 556 (798)
Q Consensus 496 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~-----~~~~~~------------ 556 (798)
++|++++|.+..+| ..++++++|++|++++|.+....+..+.+| +|+.+++... ...+..
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEE
Confidence 88888888877754 678888888888888888764222244444 4466666531 111111
Q ss_pred -------------hcCCCCCCCeEEEecccc------------------------------hhhhhHHHhccCCCCCCEE
Q 048418 557 -------------ILGRLPNLRNLRIWGDLS------------------------------YYQFLLSQSLCRLSCLESL 593 (798)
Q Consensus 557 -------------~l~~l~~L~~L~l~~~~~------------------------------~~~~~l~~~l~~l~~L~~L 593 (798)
.+..+++|+.|+++++.. .....++..+ ..++|++|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEE
Confidence 012344555555555410 0011111111 12356666
Q ss_pred EEecCC----CC--------CCCcee-----------------------------ee--------ec-CCCCCCeeEEEE
Q 048418 594 KLVNES----KM--------PAFSKI-----------------------------VL--------VE-YQFPPRLTHLSF 623 (798)
Q Consensus 594 ~l~~n~----i~--------~~L~~L-----------------------------~l--------~~-~~~l~~L~~L~L 623 (798)
++++|. +| ++++.| .+ .+ .. +++|++|++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-l~~L~~L~l 360 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS-PSSFTFLNF 360 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSS-CCCCCEEEC
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccC-CCCceEEEC
Confidence 666532 22 222222 22 00 33 678888888
Q ss_pred EeccCCCCCccccccCcccceEEEeeccccCC-eeeeCCCCCccccEEEeecCCCCCcceec-CCcccccceeeEeeCCC
Q 048418 624 SNTELMEDPMPALEKMPLLQVLKLKQNSYSGR-KLTCGSDGFPNLKVLHLKSMLWLEEWTMG-TGAMPKLEFLIINPCAY 701 (798)
Q Consensus 624 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~ 701 (798)
++|.+.+..+..++.+++|+.|++++|.+++. ..+..+..+++|+.|++++|.....+|.. +..+++|+.|++++|..
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 88888776777788888888888888877652 22445677888888888887544436543 56778888888888876
Q ss_pred CCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCC-CCcccccc
Q 048418 702 LKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPS-LPSQRKLK 769 (798)
Q Consensus 702 l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~-l~~l~~L~ 769 (798)
...+|..+. ++|+.|++++|.. ...+..+..+++|+.|++++|.++. +|+. +..+++|+
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l------~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~ 500 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRI------MSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQ 500 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCC------CCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCC
T ss_pred Ccchhhhhc--CcCCEEECCCCcC------cccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCC
Confidence 655555443 6888888888852 2334445578899999999999985 4544 77776664
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=273.12 Aligned_cols=128 Identities=21% Similarity=0.249 Sum_probs=82.6
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCccc-ccC-cccccCcCccceEEecCCCccccChhhhhCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVL-IQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPN 494 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i-~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 494 (798)
+++++.|.+.++... .+.+..|.++++|++|+|++|.. ..+ |..|+++++|++|+|++|.+..+++..|+++++
T Consensus 23 p~~l~~LdLs~N~i~----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIR----TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESCCCC----EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCcCEEECCCCcCC----ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 567777777766542 23344566777777777777743 344 566777777777777777777553333377777
Q ss_pred CcEeecccccccc-chhh--hcccccCceeccCCcccCCCCCC-CCCCCCCcceeecC
Q 048418 495 LYTLDMPFSYIDH-TADE--FWKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISAL 548 (798)
Q Consensus 495 L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~ 548 (798)
|++|+|++|.+.. +|.. ++++++|++|++++|.+.....+ .++++++|+.++++
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 7777777776654 3443 66777777777777776643343 56677777776665
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=7.9e-26 Score=263.62 Aligned_cols=308 Identities=15% Similarity=0.125 Sum_probs=246.0
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCc-ccccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
.++++.+.+.++.. ..+++.+|..+++|++|+|++|.++.+| ..++.+++|++|+|++|.++.+|+..|+++++|
T Consensus 50 l~~l~~l~l~~~~l----~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESSCEE----SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeCCCC----CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 78899999887765 3566778899999999999999998554 589999999999999999998888766999999
Q ss_pred cEeeccccccccchhh-hcccccCceeccCCcccCCCCCC-CCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEeccc
Q 048418 496 YTLDMPFSYIDHTADE-FWKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 573 (798)
Q Consensus 496 ~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 573 (798)
++|+|++|.+..+|.. ++++++|++|++++|.+.. ..| .++++++|+.+++......... ++.+++|+.|+++++.
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNL 203 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCc
Confidence 9999999999999876 4899999999999999863 344 7889999999999864333334 6678899999998873
Q ss_pred chhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeecccc
Q 048418 574 SYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYS 653 (798)
Q Consensus 574 ~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 653 (798)
. ..+....+|+.|++++|. +..+.. .. +++|+.|++++|.+++ ++.++.+++|+.|+|++|.+.
T Consensus 204 --l-----~~l~~~~~L~~L~ls~n~----l~~~~~--~~-~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 204 --L-----STLAIPIAVEELDASHNS----INVVRG--PV-NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp --C-----SEEECCTTCSEEECCSSC----CCEEEC--SC-CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred --c-----ccccCCchhheeeccCCc----cccccc--cc-CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 1 124456789999998866 444322 12 5789999999998764 477888999999999988877
Q ss_pred CCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhc
Q 048418 654 GRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLRE 733 (798)
Q Consensus 654 ~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~ 733 (798)
+. .+..+..+++|+.|+|++| .+..+|...+.+|+|+.|++++|... .+|..+..+++|+.|++++|+..
T Consensus 268 ~~-~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~------- 337 (597)
T 3oja_B 268 KI-MYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV------- 337 (597)
T ss_dssp EE-ESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-------
T ss_pred CC-CHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC-------
Confidence 63 3566778899999999987 56778877788899999999988744 68888888899999999998622
Q ss_pred CCCcccCCCceeEeeccccccccC
Q 048418 734 FEDKEQSIPPLAHFMEYESQITET 757 (798)
Q Consensus 734 ~~~~i~~l~~L~~l~l~~n~l~~~ 757 (798)
.. .+..+++|+.|++++|.+.+.
T Consensus 338 ~~-~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 338 TL-KLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CC-CCCTTCCCSEEECCSSCEEHH
T ss_pred Cc-ChhhcCCCCEEEeeCCCCCCh
Confidence 11 256788899999999887653
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.5e-25 Score=243.23 Aligned_cols=304 Identities=18% Similarity=0.180 Sum_probs=244.4
Q ss_pred hhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCcee
Q 048418 442 CEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHL 521 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 521 (798)
+..+++|+.|+++++.+..+|. +..+++|++|++++|.++.+|. + .++++|++|++++|.+..+| .+.++++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~-~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-L-SNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-h-hcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 4578999999999999988874 8999999999999999999988 5 99999999999999999887 49999999999
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCC--CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCC
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALH--PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNES 599 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~ 599 (798)
++++|.+.. +|.+..+++|+.+++.. ....+.. +..+++|+.|+++++. ...++. +..+++|+.|++++|.
T Consensus 116 ~l~~n~i~~--~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~---~~~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 116 YLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK---VKDVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp ECTTSCCCC--CGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC---CCCCGG-GGGCTTCSEEECTTSC
T ss_pred ECcCCcccC--chhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC---cCCchh-hccCCCCCEEEccCCc
Confidence 999999864 55678999999999985 3344556 8999999999999984 222222 7789999999999876
Q ss_pred CCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCC
Q 048418 600 KMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLE 679 (798)
Q Consensus 600 i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 679 (798)
+..+.. +.. +++|+.|++++|.+.... .+..+++|+.|++++|.++... . +..+++|++|++++| .+.
T Consensus 189 ----l~~~~~-~~~-l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n-~l~ 256 (347)
T 4fmz_A 189 ----IEDISP-LAS-LTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLS--P-LANLSQLTWLEIGTN-QIS 256 (347)
T ss_dssp ----CCCCGG-GGG-CTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS-CCC
T ss_pred ----cccccc-ccC-CCccceeecccCCCCCCc--hhhcCCcCCEEEccCCccCCCc--c-hhcCCCCCEEECCCC-ccC
Confidence 333221 344 899999999999876533 3889999999999999887633 2 778999999999998 455
Q ss_pred cceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCC
Q 048418 680 EWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEP 759 (798)
Q Consensus 680 ~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p 759 (798)
.++ .+..+++|+.|++++|.. ..+| .+..+++|+.|++++|+.. ......+..+++|+.+++++|.+++..|
T Consensus 257 ~~~-~~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 257 DIN-AVKDLTKLKMLNVGSNQI-SDIS-VLNNLSQLNSLFLNNNQLG-----NEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCG-GGTTCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCC-----GGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCh-hHhcCCCcCEEEccCCcc-CCCh-hhcCCCCCCEEECcCCcCC-----CcChhHhhccccCCEEEccCCccccccC
Confidence 554 578899999999999964 4454 4788999999999999732 1123345689999999999999998766
Q ss_pred CCCCcccccchhhhhHHHhhhhhcCccccccc
Q 048418 760 PSLPSQRKLKFGLRTWEWNEERQQNDYKDCHL 791 (798)
Q Consensus 760 ~~l~~l~~L~~~~~~~~~~~~~~~l~~~~~~~ 791 (798)
+..+++| ..+++++|..
T Consensus 329 --~~~l~~L-------------~~L~l~~N~i 345 (347)
T 4fmz_A 329 --LASLSKM-------------DSADFANQVI 345 (347)
T ss_dssp --GGGCTTC-------------SEESSSCC--
T ss_pred --hhhhhcc-------------ceeehhhhcc
Confidence 6666666 5666666653
No 25
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.93 E-value=3.6e-26 Score=266.50 Aligned_cols=223 Identities=19% Similarity=0.291 Sum_probs=176.3
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccc-ccccc-ccce-----------------
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYV-KHYFD-CHAW----------------- 217 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~-~~~F~-~~~w----------------- 217 (798)
....+|||+.++++|.++|....+..++|+|+||||+||||||+.+|++.++ ..+|+ .++|
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~ 201 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQN 201 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHH
Confidence 4567999999999999999865556899999999999999999999998666 78894 6777
Q ss_pred -----------------------------------EEEEEEECCCChhhHHHHhhhcCCCCCCcEEEEEeeeccccc---
Q 048418 218 -----------------------------------RYLIVFDNVWRISAWDVIRKILPDNQNGSRVLITLAQIEIVT--- 259 (798)
Q Consensus 218 -----------------------------------r~LivlDdvw~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~--- 259 (798)
++||||||||+...++.+ .+||+||||||++.++.
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC
Confidence 499999999997765432 56899999999998775
Q ss_pred ccccc-------------------------hhhhhcccee-----------eccCcccCCcCCCCchHHHhhhccC----
Q 048418 260 SFQFE-------------------------NGENIGLDFV-----------PTGGPLRATYQGWPFHILYHGSISL---- 299 (798)
Q Consensus 260 ~~~~~-------------------------~l~~i~~~i~-----------~~g~~L~~~~~~W~~~~~~l~~~~~---- 299 (798)
...|+ ...+.+.+|+ .+|+.|+.....|+ .+++.+..
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~---~~l~~l~~~~~~ 351 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWE---YYLKQLQNKQFK 351 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHH---HHHHHHHSCCCC
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHH---HHHHHHHHhHHH
Confidence 12221 1123344444 45555555455798 77665532
Q ss_pred ---------CccHHHHHhccccccccccCCCCCCchHHHhHhccCCCCceechhhHHHHHHHcCCCCCCHHHHHHHHHHH
Q 048418 300 ---------EENIDEVLTMSLGLQCVIYCMLPFCLKPCFLYFSVFPAHLEISTRQLYQLWIAEGFISDNNEATAEKYLEQ 370 (798)
Q Consensus 300 ---------~~~i~~~l~~s~~~~~~~y~~L~~~lk~cfl~~~~fp~~~~i~~~~Li~~Wiaeg~i~~~~e~~~~~~~~~ 370 (798)
...+..++..| |+.||++.|.||++||+||+|+.|+.+.++.+|.++ .+.+..++++
T Consensus 352 ~~~~~~~~~~~~l~~~l~~s-------~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~ 417 (591)
T 1z6t_A 352 RIRKSSSYDYEALDEAMSIS-------VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQE 417 (591)
T ss_dssp CSSCCCSSCCHHHHHHHHHH-------HHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHH
T ss_pred HhhhccccchHHHHHHHHHH-------HHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHH
Confidence 12489999999 999999999999999999999999999999999654 3457889999
Q ss_pred HHhCCcceeeccCCCCceeEEEcCcchHHHHHHHhh
Q 048418 371 LINRGFVEANKRRAGGTINTCSIPGCCHPVLLGVAS 406 (798)
Q Consensus 371 L~~~~ll~~~~~~~~g~~~~~~mHdli~dla~~i~~ 406 (798)
|+++||++... +|....|+||+++|++++....
T Consensus 418 L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 418 FVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHTG
T ss_pred HHhCcCeEEec---CCCccEEEEcHHHHHHHHhhhh
Confidence 99999998654 3444689999999999988743
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=7.9e-26 Score=254.96 Aligned_cols=326 Identities=15% Similarity=0.096 Sum_probs=224.1
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-cC-cccccCcCccceEEecCCCcccc-ChhhhhCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-QY-PSGIENLFLLRYLKLNIPSLKSL-PPSLLSNLP 493 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~l-p~~i~~L~~Lr~L~L~~~~i~~l-p~~i~~~L~ 493 (798)
.++++.|.+.++... .+.+..|.++++|++|++++|.+. .+ |..+..+++|++|+|++|.+..+ |..+ ++++
T Consensus 29 ~~~l~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~ 103 (455)
T 3v47_A 29 PAHVNYVDLSLNSIA----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLA 103 (455)
T ss_dssp CTTCCEEECCSSCCC----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCT
T ss_pred CCccCEEEecCCccC----cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCcc
Confidence 567888888776552 344456777888888888888765 44 45677788888888888887765 4444 7888
Q ss_pred CCcEeecccccccc-chhh--hcccccCceeccCCcccCCCCCC-C-CCCCCCcceeecCCC---CcchhhhcC------
Q 048418 494 NLYTLDMPFSYIDH-TADE--FWKMNKLKHLNFGSITLPAHPGK-Y-CGSLENLNFISALHP---CCCTEDILG------ 559 (798)
Q Consensus 494 ~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~L~~~~i~~~~~p-~-i~~L~~L~~l~~~~~---~~~~~~~l~------ 559 (798)
+|++|++++|.+.. +|.. +.++++|++|++++|.+.. ..| . ++++++|+.+++... ...+.. +.
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-cCcccccCCCCcccEEeCCCCcccccChhh-hhcccccc
Confidence 88888888887765 3443 7778888888888887753 234 3 667777777777641 111222 22
Q ss_pred ----------------------------CCCCCCeEEEecccchhhhhHHHhccC---CCCCCEEEEecCCC------CC
Q 048418 560 ----------------------------RLPNLRNLRIWGDLSYYQFLLSQSLCR---LSCLESLKLVNESK------MP 602 (798)
Q Consensus 560 ----------------------------~l~~L~~L~l~~~~~~~~~~l~~~l~~---l~~L~~L~l~~n~i------~~ 602 (798)
.+++|+.|++++|. ..+..+..+.. .++|+.|++++|.. ..
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeeccccccccccchh
Confidence 23445555555552 33333333222 24555555554321 00
Q ss_pred CCceeee-ecCC-CCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCc
Q 048418 603 AFSKIVL-VEYQ-FPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEE 680 (798)
Q Consensus 603 ~L~~L~l-~~~~-~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 680 (798)
.+..+.. .+.. ..++|++|++++|.+.+..+..++.+++|+.|++++|.+.+. .+..+..+++|++|++++|. +..
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~ 337 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNF-LGS 337 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSC-CCE
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCc-cCC
Confidence 0110000 0111 037899999999999887888899999999999998888753 35567889999999999985 454
Q ss_pred c-eecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhc-CCCcccCCCceeEeeccccccccCC
Q 048418 681 W-TMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQSIPPLAHFMEYESQITETE 758 (798)
Q Consensus 681 l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~-~~~~i~~l~~L~~l~l~~n~l~~~~ 758 (798)
+ +..++.+++|++|++++|......|..+..+++|+.|++++|... . ....+..+++|+.+++++|.+++..
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK------SVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS------CCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc------cCCHhHhccCCcccEEEccCCCcccCC
Confidence 4 667889999999999999876666888999999999999999632 2 2223578999999999999999876
Q ss_pred C
Q 048418 759 P 759 (798)
Q Consensus 759 p 759 (798)
|
T Consensus 412 ~ 412 (455)
T 3v47_A 412 P 412 (455)
T ss_dssp T
T ss_pred C
Confidence 5
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=256.66 Aligned_cols=308 Identities=16% Similarity=0.095 Sum_probs=206.7
Q ss_pred CceeEEEecCcccccCc-ccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccC
Q 048418 446 KLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFG 524 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 524 (798)
++|++|+|++|.++.++ ..+..+++|++|++++|.++.+++..|+++++|++|++++|.+..+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 79999999999999665 6899999999999999999987544349999999999999999999987 89999999999
Q ss_pred CcccCCCCCC-CCCCCCCcceeecCCCCcchhhhcCCCCCC--CeEEEecccchhhhhHHH-------------------
Q 048418 525 SITLPAHPGK-YCGSLENLNFISALHPCCCTEDILGRLPNL--RNLRIWGDLSYYQFLLSQ------------------- 582 (798)
Q Consensus 525 ~~~i~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~~~~~l~~------------------- 582 (798)
+|.+....+| .++++++|+.++++........ +..+++| +.|+++++........|.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred CCccccccchhhhccCCcceEEEecCcccchhh-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 9999866688 8999999999999853333344 6677777 888888873100111111
Q ss_pred -------------------------------------hccCCCCCCEEEEecCCC-------------CCCCceeee---
Q 048418 583 -------------------------------------SLCRLSCLESLKLVNESK-------------MPAFSKIVL--- 609 (798)
Q Consensus 583 -------------------------------------~l~~l~~L~~L~l~~n~i-------------~~~L~~L~l--- 609 (798)
.+..+++|+.|+++.+++ +++|+.|.+
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 334444444444443221 123444433
Q ss_pred --------ec-----CCCCCCeeEEEEEeccC--------------------------CCCCccccccCcccceEEEeec
Q 048418 610 --------VE-----YQFPPRLTHLSFSNTEL--------------------------MEDPMPALEKMPLLQVLKLKQN 650 (798)
Q Consensus 610 --------~~-----~~~l~~L~~L~L~~~~l--------------------------~~~~~~~l~~l~~L~~L~L~~~ 650 (798)
++ .. +++|+.+++++|.+ .... ....+++|+.|++++|
T Consensus 258 ~l~~~~p~~~~~~~~~~-l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTS-LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp EEESCCCCCCCCCCSCC-CCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred cccCccccchhhccccc-CceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 11 22 33444444444332 1110 1156677777777777
Q ss_pred cccCCeeeeCCCCCccccEEEeecCCCCC--cceecCCcccccceeeEeeCCCCCCCCcc-CCCCCCCCEEEEecCcHHH
Q 048418 651 SYSGRKLTCGSDGFPNLKVLHLKSMLWLE--EWTMGTGAMPKLEFLIINPCAYLKKMPEQ-LWCIKSLNKFDCWWPQPEL 727 (798)
Q Consensus 651 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~~~ 727 (798)
.+++. .+..+..+++|++|++++|.... .+|..++.+++|+.|++++|.....+|.. +..+++|+.|++++|...
T Consensus 335 ~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~- 412 (520)
T 2z7x_B 335 LLTDT-VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT- 412 (520)
T ss_dssp CCCTT-TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC-
T ss_pred ccChh-hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC-
Confidence 76653 24455677788888887774332 34455677788888888887766546654 667778888888887521
Q ss_pred HHHHhcCCCcccCC-CceeEeeccccccccCCCCCCCcccccc
Q 048418 728 RQKLREFEDKEQSI-PPLAHFMEYESQITETEPPSLPSQRKLK 769 (798)
Q Consensus 728 ~~~l~~~~~~i~~l-~~L~~l~l~~n~l~~~~p~~l~~l~~L~ 769 (798)
. ..+ ..+ ++|+.|++++|.++ .+|..+..+++|+
T Consensus 413 -~---~~~---~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 413 -D---TIF---RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp -G---GGG---GSCCTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred -c---chh---hhhcccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 0 011 122 68888888888888 6676665666653
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=3.6e-26 Score=257.71 Aligned_cols=316 Identities=12% Similarity=0.079 Sum_probs=229.8
Q ss_pred CceeEEEecCcccccC-cccccCcCccceEEecCCCcc-ccChhhhhCCCCCcEeeccccccccc-hhhhcccccCceec
Q 048418 446 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLK-SLPPSLLSNLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHLN 522 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~ 522 (798)
++|++|+|++|.++.+ |..++++++|++|++++|.+. .+|+..|.++++|++|++++|.+..+ |..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 7899999999999854 788999999999999999986 67665459999999999999988877 78899999999999
Q ss_pred cCCcccCCCCCCC--CCCCCCcceeecCCC---CcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCC--CCCCEEEE
Q 048418 523 FGSITLPAHPGKY--CGSLENLNFISALHP---CCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRL--SCLESLKL 595 (798)
Q Consensus 523 L~~~~i~~~~~p~--i~~L~~L~~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l--~~L~~L~l 595 (798)
+++|.+.....+. ++++++|+.+++... ...+...++++++|+.|+++++. .....+..+..+ .+|+.|++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK--VKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC--BSCCCTTTSGGGTTCEEEEEEC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc--ccccChhhhhcccccccccccc
Confidence 9999986322223 889999999998852 22233336789999999999983 333334444443 56777777
Q ss_pred ecCCC---C---------------CCCceeeeecCC-------------CCCCeeEEEEEeccCCCCC----------cc
Q 048418 596 VNESK---M---------------PAFSKIVLVEYQ-------------FPPRLTHLSFSNTELMEDP----------MP 634 (798)
Q Consensus 596 ~~n~i---~---------------~~L~~L~l~~~~-------------~l~~L~~L~L~~~~l~~~~----------~~ 634 (798)
++|.+ + ++|+.|.+.-.. ..++|+.|++++|...+.. ..
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 76542 1 123333221000 0145555555555322211 11
Q ss_pred ccc--cCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCC
Q 048418 635 ALE--KMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCI 712 (798)
Q Consensus 635 ~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l 712 (798)
.+. ..++|+.|++++|.+.+. .+..+..+++|++|++++|......+..++.+++|+.|++++|......|..+..+
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred ccccccccCceEEEecCcccccc-chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 111 236899999998887753 45567889999999999985444446678899999999999998765557788999
Q ss_pred CCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCCCcccccc
Q 048418 713 KSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKLK 769 (798)
Q Consensus 713 ~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L~ 769 (798)
++|+.|++++|... ...+..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 347 ~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 347 DKLEVLDLSYNHIR-----ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ccCCEEECCCCccc-----ccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 99999999999622 11345677899999999999999987776777777663
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.2e-24 Score=246.02 Aligned_cols=306 Identities=17% Similarity=0.168 Sum_probs=232.9
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
+++|+.|.+.++.... +++ +.++++|++|++++|.+..++. ++++++|++|++++|.++.+|. + +++++|+
T Consensus 67 l~~L~~L~Ls~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~ 137 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTD----ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-L-KNLTNLN 137 (466)
T ss_dssp CTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCS
T ss_pred hcCCCEEECCCCccCC----chh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-H-cCCCCCC
Confidence 8899999999886532 222 7899999999999999987776 9999999999999999998876 5 9999999
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCC-CcchhhhcCCCCCCCeEEEecccch
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHP-CCCTEDILGRLPNLRNLRIWGDLSY 575 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 575 (798)
+|++++|.+..+|. +..+++|++|++++ .+. .++.++++++|+.+++... ...+.. +..+++|+.|+++++.
T Consensus 138 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-- 210 (466)
T 1o6v_A 138 RLELSSNTISDISA-LSGLTSLQQLSFGN-QVT--DLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQ-- 210 (466)
T ss_dssp EEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCC--CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC--
T ss_pred EEECCCCccCCChh-hccCCcccEeecCC-ccc--CchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCc--
Confidence 99999998888874 77788888887753 222 1335667777777777642 222334 6667777777777763
Q ss_pred hhhhHHHhccCCCCCCEEEEecCCC--------CCCCceeee---------ecCCCCCCeeEEEEEeccCCCCCcccccc
Q 048418 576 YQFLLSQSLCRLSCLESLKLVNESK--------MPAFSKIVL---------VEYQFPPRLTHLSFSNTELMEDPMPALEK 638 (798)
Q Consensus 576 ~~~~l~~~l~~l~~L~~L~l~~n~i--------~~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 638 (798)
.....+ ++.+++|+.|++++|.+ +++|+.|.+ .+.. +++|++|++++|.+.+.. .+..
T Consensus 211 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~l~~n~l~~~~--~~~~ 285 (466)
T 1o6v_A 211 ISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNIS--PLAG 285 (466)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTT-CTTCSEEECCSSCCCCCG--GGTT
T ss_pred cccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhc-CCCCCEEECCCCccCccc--cccC
Confidence 222111 45566777777776543 445666655 2445 899999999999986533 3889
Q ss_pred CcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEE
Q 048418 639 MPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKF 718 (798)
Q Consensus 639 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 718 (798)
+++|+.|++++|.+.+.. .+..+++|+.|++++|. +..++. ++.+++|+.|++++|... .+ ..+..+++|+.|
T Consensus 286 l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L 358 (466)
T 1o6v_A 286 LTALTNLELNENQLEDIS---PISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKVS-DV-SSLANLTNINWL 358 (466)
T ss_dssp CTTCSEEECCSSCCSCCG---GGGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSCCC-CC-GGGTTCTTCCEE
T ss_pred CCccCeEEcCCCcccCch---hhcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCccC-Cc-hhhccCCCCCEE
Confidence 999999999999887632 26789999999999985 454443 679999999999999744 45 468899999999
Q ss_pred EEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccC
Q 048418 719 DCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITET 757 (798)
Q Consensus 719 ~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~ 757 (798)
++++|+.. ....+..+++|+.+++++|.+++.
T Consensus 359 ~l~~n~l~-------~~~~~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 359 SAGHNQIS-------DLTPLANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp ECCSSCCC-------BCGGGTTCTTCCEEECCCEEEECC
T ss_pred eCCCCccC-------ccchhhcCCCCCEEeccCCcccCC
Confidence 99999732 333378899999999999999984
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=6.8e-25 Score=248.88 Aligned_cols=297 Identities=19% Similarity=0.138 Sum_probs=207.3
Q ss_pred CCCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCC
Q 048418 416 YDSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPN 494 (798)
Q Consensus 416 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 494 (798)
+.++++.|.+.++... .+.+..|.++++|++|+|++|.++.+ |..++++++|++|+|++|.++.+|...|.++++
T Consensus 30 ~~~~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 30 IPTETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CCTTCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 3677888888777652 34455678888888888888888744 677888888888888888888888776688888
Q ss_pred CcEeeccccccccc-hhhhcccccCceeccCCcccCCCCCC-CCCCCCCcceeecCCC--CcchhhhcCCCCCCCeEEEe
Q 048418 495 LYTLDMPFSYIDHT-ADEFWKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIW 570 (798)
Q Consensus 495 L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~ 570 (798)
|++|+|++|.+..+ |..+.++++|++|++++|.+.. ..| .+.++++|+.+++... ...+...+..+++|+.|+++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 88888888877766 5677888888888888887753 233 6777777777777641 22222237777888888888
Q ss_pred cccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeec
Q 048418 571 GDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQN 650 (798)
Q Consensus 571 ~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 650 (798)
++. .....+..+..+++|+.|++++|. .+..+...... ..+|++|++++|.+.......+..+++|+.|+|++|
T Consensus 185 ~n~--i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 185 HLN--INAIRDYSFKRLYRLKVLEISHWP---YLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp SCC--CCEECTTCSCSCTTCCEEEEECCT---TCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred CCc--CcEeChhhcccCcccceeeCCCCc---cccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence 773 333333456777788888887732 33333222223 457888888888876554456778888888888877
Q ss_pred cccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCc
Q 048418 651 SYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 651 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 724 (798)
.+... .+..+..+++|+.|+|++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|+
T Consensus 259 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 259 PISTI-EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCCEE-CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred cCCcc-ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 76642 23446677888888888874333335567778888888888886444333456777888888888775
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=5.9e-25 Score=246.98 Aligned_cols=294 Identities=16% Similarity=0.040 Sum_probs=231.2
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
+++|+.|.+.++.... ++ .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| + +++++|+
T Consensus 41 l~~L~~L~Ls~n~l~~----~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD----MT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSCCCC----CT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCC
T ss_pred cCCCCEEEccCCCccc----Ch--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCC
Confidence 8999999999876532 22 4789999999999999999876 899999999999999999886 5 9999999
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCC-CcchhhhcCCCCCCCeEEEecccch
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHP-CCCTEDILGRLPNLRNLRIWGDLSY 575 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~ 575 (798)
+|++++|.+..+| ++.+++|++|++++|.+.. +| ++++++|+.+++... ...... ++.+++|+.|+++++.
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~--l~-l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~-- 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE--ID-VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK-- 181 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC--CC-CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC--
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccce--ec-cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc--
Confidence 9999999998886 8999999999999999875 33 678888999988753 111124 8889999999999983
Q ss_pred hhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCC
Q 048418 576 YQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGR 655 (798)
Q Consensus 576 ~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 655 (798)
...++ +..+++|+.|++++|. ++.+ .+.. +++|++|++++|++++ .+ ++.+++|+.|++++|.+++.
T Consensus 182 -l~~l~--l~~l~~L~~L~l~~N~----l~~~--~l~~-l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 182 -ITELD--VSQNKLLNRLNCDTNN----ITKL--DLNQ-NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp -CCCCC--CTTCTTCCEEECCSSC----CSCC--CCTT-CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred -cceec--cccCCCCCEEECcCCc----CCee--cccc-CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 23344 7888999999999877 4443 3556 8999999999999876 32 88899999999999988774
Q ss_pred eeeeCCCCCcccc----------EEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCc--------cCCCCCCCCE
Q 048418 656 KLTCGSDGFPNLK----------VLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPE--------QLWCIKSLNK 717 (798)
Q Consensus 656 ~~~~~~~~~~~L~----------~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~--------~l~~l~~L~~ 717 (798)
. .+.+++|+ .|++++|..+..+| .+.+++|+.|++++|..++.+|. .+.++++|+.
T Consensus 249 ~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 249 D----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp C----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred C----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 2 33455554 55555555555555 46789999999999987666553 2556678888
Q ss_pred EEEecCcHHHHHHHhcCCCcccCCCceeEeecccccccc
Q 048418 718 FDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITE 756 (798)
Q Consensus 718 L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~ 756 (798)
|++++|... .. .+.++++|+.|++++|++++
T Consensus 323 L~L~~N~l~-------~l-~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 323 LYLNNTELT-------EL-DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp EECTTCCCS-------CC-CCTTCTTCSEEECCSSCCCB
T ss_pred EECCCCccc-------cc-ccccCCcCcEEECCCCCCCC
Confidence 888888632 22 37788999999999999887
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=8.6e-25 Score=252.63 Aligned_cols=273 Identities=17% Similarity=0.162 Sum_probs=203.5
Q ss_pred CceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 523 (798)
+.|++|++++|.++.+ |..++++++|++|++++|.++.+++..|+++++|++|++++|.+..+|.. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 6899999999999854 67899999999999999999988765559999999999999999888654 999999999999
Q ss_pred CCcccCCCCCC-CCCCCCCcceeecCCC---Ccch-hhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecC
Q 048418 524 GSITLPAHPGK-YCGSLENLNFISALHP---CCCT-EDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNE 598 (798)
Q Consensus 524 ~~~~i~~~~~p-~i~~L~~L~~l~~~~~---~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n 598 (798)
++|.+.....| .++++++|+.+++... ...+ .. ++.+++|+.|+++++ ...+..|..+..+++|+.|+++.|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKAL--SLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEET--TCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCC--cccccChhhhhccccCceEecccC
Confidence 99999765566 8899999999998742 2333 35 899999999999998 455567788899999999999986
Q ss_pred CC----------CCCCceeeeec---C----------CCCCCee------------------------------------
Q 048418 599 SK----------MPAFSKIVLVE---Y----------QFPPRLT------------------------------------ 619 (798)
Q Consensus 599 ~i----------~~~L~~L~l~~---~----------~~l~~L~------------------------------------ 619 (798)
.+ +++|+.|.+.- . ..+++|+
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 52 46777776610 0 0022222
Q ss_pred ---------------------------------------------------EEEEEeccCCCCCcccc-ccCcccceEEE
Q 048418 620 ---------------------------------------------------HLSFSNTELMEDPMPAL-EKMPLLQVLKL 647 (798)
Q Consensus 620 ---------------------------------------------------~L~L~~~~l~~~~~~~l-~~l~~L~~L~L 647 (798)
+|++++|.+. ..+..+ ..+++|+.|++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~L 341 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEEC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEc
Confidence 2233333221 122222 35778888888
Q ss_pred eeccccCCee--eeCCCCCccccEEEeecCCCCCcce---ecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEec
Q 048418 648 KQNSYSGRKL--TCGSDGFPNLKVLHLKSMLWLEEWT---MGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWW 722 (798)
Q Consensus 648 ~~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 722 (798)
++|.+.+..+ ...++.+++|++|++++| .++.++ ..++.+++|+.|++++|. +..+|..+..+++|+.|++++
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTT
T ss_pred cCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCC
Confidence 8777765322 223567788888888887 455543 346778888888888885 446787777778888888887
Q ss_pred Cc
Q 048418 723 PQ 724 (798)
Q Consensus 723 c~ 724 (798)
|.
T Consensus 420 N~ 421 (549)
T 2z81_A 420 TG 421 (549)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=252.99 Aligned_cols=333 Identities=16% Similarity=0.112 Sum_probs=223.9
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcc-cccCcCccceEEecCCCccc--cChhhhhCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKS--LPPSLLSNLP 493 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~--lp~~i~~~L~ 493 (798)
+++||.|.+.++... .+++..|..+++|++|++++|.++.+|. .++++++|++|++++|.+.. +|..+ ++++
T Consensus 75 l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~ 149 (570)
T 2z63_A 75 LSHLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLT 149 (570)
T ss_dssp CTTCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCT
T ss_pred chhCCEEeCcCCcCC----ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccC
Confidence 778888888776542 3444567788888888888888876664 57888888888888888774 67777 8888
Q ss_pred CCcEeeccccccccc-hhhhcccccC----ceeccCCcccCCCC------------------------------------
Q 048418 494 NLYTLDMPFSYIDHT-ADEFWKMNKL----KHLNFGSITLPAHP------------------------------------ 532 (798)
Q Consensus 494 ~L~~L~L~~~~l~~l-p~~i~~L~~L----~~L~L~~~~i~~~~------------------------------------ 532 (798)
+|++|++++|.+..+ |..++.+++| ++|++++|.+....
T Consensus 150 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~ 229 (570)
T 2z63_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229 (570)
T ss_dssp TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEE
T ss_pred CCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccce
Confidence 888888888877666 4556667666 66777666543210
Q ss_pred --------------------------------------------CC-CCCCCCCcceeecCC--CCcchhhhcCCCCCCC
Q 048418 533 --------------------------------------------GK-YCGSLENLNFISALH--PCCCTEDILGRLPNLR 565 (798)
Q Consensus 533 --------------------------------------------~p-~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~L~ 565 (798)
.| .+..+++|+.+++.. ....+.. +..+ +|+
T Consensus 230 ~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~-~L~ 307 (570)
T 2z63_A 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNF-GWQ 307 (570)
T ss_dssp EEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC-CSCC-CCS
T ss_pred eeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh-hccC-Ccc
Confidence 11 122334444444432 1122233 4455 777
Q ss_pred eEEEecccchhhhhHHHhccCCCCCCEEEEecCCC--------CCCCceeee-------------ecCCCCCCeeEEEEE
Q 048418 566 NLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK--------MPAFSKIVL-------------VEYQFPPRLTHLSFS 624 (798)
Q Consensus 566 ~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i--------~~~L~~L~l-------------~~~~~l~~L~~L~L~ 624 (798)
.|+++++. ...+|. ..+++|+.|++++|.+ +++|+.|.+ .+.. +++|++|+++
T Consensus 308 ~L~l~~n~---~~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~ 381 (570)
T 2z63_A 308 HLELVNCK---FGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLS 381 (570)
T ss_dssp EEEEESCB---CSSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECC
T ss_pred EEeeccCc---ccccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccc-cCccCEEECC
Confidence 77777773 223333 3567777777776532 455666655 1234 6788888888
Q ss_pred eccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCC-C
Q 048418 625 NTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYL-K 703 (798)
Q Consensus 625 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~ 703 (798)
+|.+... ++.+..+++|+.|++++|.+.+......+..+++|++|++++|......+..+..+++|+.|++++|... .
T Consensus 382 ~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 382 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp SCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 8876543 3347788888888888877766433345677888888888887655555666778888888888888765 3
Q ss_pred CCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCCCccccc
Q 048418 704 KMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKL 768 (798)
Q Consensus 704 ~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L 768 (798)
.+|..+..+++|+.|++++|... ...+..+..+++|+.|++++|.+++..|..+.++++|
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLE-----QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cchhhhhcccCCCEEECCCCccc-----cCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 57777888888888888888522 1134456678888888888888888777777777666
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=2.6e-24 Score=260.87 Aligned_cols=341 Identities=20% Similarity=0.167 Sum_probs=190.4
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-cCcccccCcCccceEEecCCCccc-cChh-hhhCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-QYPSGIENLFLLRYLKLNIPSLKS-LPPS-LLSNLP 493 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~-i~~~L~ 493 (798)
+++|+.|.+.++... ..+.+..|.++++|++|+|++|.+. ..|..++++++|++|+|++|.+.. +|.. .+++++
T Consensus 47 l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 47 LEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred cccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 677777777776331 2333456677777777777777776 346677777777777777777763 4443 127777
Q ss_pred CCcEeeccccccccc--hhhhcccccCceeccCCcccCCCC-------------------------CC-CCCCCCC----
Q 048418 494 NLYTLDMPFSYIDHT--ADEFWKMNKLKHLNFGSITLPAHP-------------------------GK-YCGSLEN---- 541 (798)
Q Consensus 494 ~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~L~~~~i~~~~-------------------------~p-~i~~L~~---- 541 (798)
+|++|++++|.+..+ +..++++++|++|++++|.+.... .| .++.+.+
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 777777777766655 245777777777777776654210 11 1111111
Q ss_pred --cceeecCCC-----------------------------------------------------------------Ccch
Q 048418 542 --LNFISALHP-----------------------------------------------------------------CCCT 554 (798)
Q Consensus 542 --L~~l~~~~~-----------------------------------------------------------------~~~~ 554 (798)
|+.++++.. ...+
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 444433321 0001
Q ss_pred hhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCC----------CCCCceeee-----------ecCC
Q 048418 555 EDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK----------MPAFSKIVL-----------VEYQ 613 (798)
Q Consensus 555 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i----------~~~L~~L~l-----------~~~~ 613 (798)
.. +..+++|+.|++++|. .....+..+..+++|+.|++++|.+ .++|+.|.+ .+..
T Consensus 284 ~~-~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 360 (844)
T 3j0a_A 284 RV-FETLKDLKVLNLAYNK--INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360 (844)
T ss_dssp CC-SSSCCCCCEEEEESCC--CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred hh-hhcCCCCCEEECCCCc--CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence 12 3445555555555552 2223334455556666666665442 223333333 1222
Q ss_pred CCCCeeEEEEEeccCCCCC----------------------------------------ccccccCcccceEEEeecccc
Q 048418 614 FPPRLTHLSFSNTELMEDP----------------------------------------MPALEKMPLLQVLKLKQNSYS 653 (798)
Q Consensus 614 ~l~~L~~L~L~~~~l~~~~----------------------------------------~~~l~~l~~L~~L~L~~~~~~ 653 (798)
+++|++|++++|.++... +..++.+|+|+.|++++|.++
T Consensus 361 -l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 361 -LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp -CCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred -CCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 444444444444432210 000123444444555444444
Q ss_pred CCeeeeCCCCCccccEEEeecCCCCC-----cceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHH
Q 048418 654 GRKLTCGSDGFPNLKVLHLKSMLWLE-----EWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELR 728 (798)
Q Consensus 654 ~~~~~~~~~~~~~L~~L~L~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~ 728 (798)
+.........+++|+.|++++|.... ..+..+..+++|+.|++++|......|..+..+++|+.|++++|...
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-- 517 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-- 517 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS--
T ss_pred ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC--
Confidence 32211122334555555555553221 11233566788888888888755555556788999999999999622
Q ss_pred HHHhcCCCcccCCCceeEeeccccccccCCCCCCCcccccchh
Q 048418 729 QKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKLKFG 771 (798)
Q Consensus 729 ~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L~~~ 771 (798)
...+.. ..++|+.|++++|.+++..|..+.++..|.+.
T Consensus 518 ----~l~~~~-~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~ 555 (844)
T 3j0a_A 518 ----VLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555 (844)
T ss_dssp ----SCCCCC-CCSCCCEEEEEEECCCCCCSCCCSSCCEEEEE
T ss_pred ----ccChhh-hhccccEEECCCCcCCCCChhHhCCcCEEEec
Confidence 111111 12789999999999999999888887776544
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.9e-24 Score=243.72 Aligned_cols=295 Identities=16% Similarity=0.098 Sum_probs=237.5
Q ss_pred CceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 523 (798)
+.+++|+|++|.++.+ |..|.++++|++|+|++|.++.+++..|+++++|++|+|++|.+..+|.. +.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5799999999999855 56899999999999999999977544449999999999999999999764 689999999999
Q ss_pred CCcccCCCCCC-CCCCCCCcceeecCCC---CcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCC
Q 048418 524 GSITLPAHPGK-YCGSLENLNFISALHP---CCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNES 599 (798)
Q Consensus 524 ~~~~i~~~~~p-~i~~L~~L~~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~ 599 (798)
++|.+.. ..| .+..+++|+.+++... ...+.. +..+++|+.|++++|. .....+..+..+++|+.|++++|.
T Consensus 112 s~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 112 SENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp TTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEEEEESCC
T ss_pred CCCcccc-CChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCc--CcccChhHhcccCCCcEEeCCCCc
Confidence 9999863 345 7889999999998752 223345 8899999999999983 444445668899999999999976
Q ss_pred CCCCCceeee-ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCC
Q 048418 600 KMPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWL 678 (798)
Q Consensus 600 i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 678 (798)
+..+.. .+.. +++|++|++++|...+..++.....++|+.|++++|.++.. ....+..+++|+.|+|++|. +
T Consensus 188 ----i~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l 260 (477)
T 2id5_A 188 ----INAIRDYSFKR-LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNP-I 260 (477)
T ss_dssp ----CCEECTTCSCS-CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC-CHHHHTTCTTCCEEECCSSC-C
T ss_pred ----CcEeChhhccc-CcccceeeCCCCccccccCcccccCccccEEECcCCccccc-CHHHhcCccccCeeECCCCc-C
Confidence 333322 3445 89999999999987776666666677999999999988752 23456789999999999985 5
Q ss_pred Ccc-eecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhc-CCCcccCCCceeEeecccccccc
Q 048418 679 EEW-TMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQSIPPLAHFMEYESQITE 756 (798)
Q Consensus 679 ~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~-~~~~i~~l~~L~~l~l~~n~l~~ 756 (798)
..+ +..+..+++|+.|++++|......|..+..+++|+.|+|++|... . ....+..+++|+.+++++|.+..
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT------TLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS------CCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc------eeCHhHcCCCcccCEEEccCCCccC
Confidence 544 345788999999999999877766888999999999999999622 2 22345688999999999998875
Q ss_pred C
Q 048418 757 T 757 (798)
Q Consensus 757 ~ 757 (798)
.
T Consensus 335 ~ 335 (477)
T 2id5_A 335 D 335 (477)
T ss_dssp S
T ss_pred c
Confidence 4
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.1e-24 Score=252.25 Aligned_cols=319 Identities=15% Similarity=0.100 Sum_probs=225.2
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccC--hhhhhCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLP--PSLLSNLPN 494 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp--~~i~~~L~~ 494 (798)
+++|+.|.+.++... .+.+..|..+++|++|+|++|.++.+|.. .+++|++|++++|.++.+| ..+ +++++
T Consensus 75 l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~ 147 (562)
T 3a79_B 75 LSELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEF-GNLTK 147 (562)
T ss_dssp CTTCCEEECCSCCCC----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGG-GGCTT
T ss_pred CCCccEEECCCCCCC----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhh-cccCc
Confidence 889999999988653 45556789999999999999999999887 8999999999999999765 566 99999
Q ss_pred CcEeeccccccccchhhhcccccC--ceeccCCccc--CCCCCC-CCC--------------------------CCCCcc
Q 048418 495 LYTLDMPFSYIDHTADEFWKMNKL--KHLNFGSITL--PAHPGK-YCG--------------------------SLENLN 543 (798)
Q Consensus 495 L~~L~L~~~~l~~lp~~i~~L~~L--~~L~L~~~~i--~~~~~p-~i~--------------------------~L~~L~ 543 (798)
|++|++++|.+... .+..+++| ++|++++|.+ .. ..| .+. ++++|+
T Consensus 148 L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~-~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 224 (562)
T 3a79_B 148 LTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKG-GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224 (562)
T ss_dssp CCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCS-SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred ccEEecCCCccccC--chhhhhhceeeEEEeecccccccc-cCcccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence 99999999987763 45666666 9999999987 32 222 222 334444
Q ss_pred eeecCCCCc-------chhh------------------------h--cCCCCCCCeEEEecccchhhhhHHHhc------
Q 048418 544 FISALHPCC-------CTED------------------------I--LGRLPNLRNLRIWGDLSYYQFLLSQSL------ 584 (798)
Q Consensus 544 ~l~~~~~~~-------~~~~------------------------~--l~~l~~L~~L~l~~~~~~~~~~l~~~l------ 584 (798)
.+++..... .+.. . ....++|+.|+++++. ..+.+|..+
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~ip~~~~~~~~~ 302 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT--ITERIDREEFTYSET 302 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE--ECSCCCCCCCCCCSC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE--eeccccchhhhcccc
Confidence 444432110 0000 0 0011245555555542 111122111
Q ss_pred -------------------------cCCCCCCEEEEecCCC--------CCCCceeee-----------ecCCCCCCeeE
Q 048418 585 -------------------------CRLSCLESLKLVNESK--------MPAFSKIVL-----------VEYQFPPRLTH 620 (798)
Q Consensus 585 -------------------------~~l~~L~~L~l~~n~i--------~~~L~~L~l-----------~~~~~l~~L~~ 620 (798)
....+|+.|++++|.+ +++|+.|.+ ++.. +++|++
T Consensus 303 ~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~ 381 (562)
T 3a79_B 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST-LKRLQT 381 (562)
T ss_dssp SCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCS-CSSCCE
T ss_pred cchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcc-cCCCCE
Confidence 0113455555555432 234555544 3445 899999
Q ss_pred EEEEeccCCCCC--ccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEee
Q 048418 621 LSFSNTELMEDP--MPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINP 698 (798)
Q Consensus 621 L~L~~~~l~~~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~ 698 (798)
|++++|.+.+.. +..++.+++|+.|++++|.+.+......+..+++|+.|++++|......+..+. ++|+.|++++
T Consensus 382 L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~ 459 (562)
T 3a79_B 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHN 459 (562)
T ss_dssp EECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCS
T ss_pred EECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCC
Confidence 999999987532 356889999999999999988744444577899999999999965444544332 7999999999
Q ss_pred CCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCc-ccCCCceeEeeccccccccC
Q 048418 699 CAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDK-EQSIPPLAHFMEYESQITET 757 (798)
Q Consensus 699 c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~-i~~l~~L~~l~l~~n~l~~~ 757 (798)
|. +..+|..+..+++|+.|++++|.. ...+.. +..+++|+.+++++|.+.+.
T Consensus 460 N~-l~~ip~~~~~l~~L~~L~L~~N~l------~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 460 NR-IMSIPKDVTHLQALQELNVASNQL------KSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SC-CCCCCTTTTSSCCCSEEECCSSCC------CCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred Cc-CcccChhhcCCCCCCEEECCCCCC------CCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 96 568999888999999999999962 223333 77899999999999998765
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=4.9e-24 Score=239.44 Aligned_cols=313 Identities=17% Similarity=0.104 Sum_probs=234.3
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
+++|+.|.+.++.... + + +..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| + +++++|+
T Consensus 63 l~~L~~L~Ls~n~l~~----~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~-~~l~~L~ 130 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT----L-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--V-SQNPLLT 130 (457)
T ss_dssp CTTCSEEECCSSCCSC----C-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--C-TTCTTCC
T ss_pred cCCCCEEEccCCcCCe----E-c--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--C-CCCCcCC
Confidence 8999999999887633 2 1 788999999999999999875 899999999999999999986 5 9999999
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchh
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY 576 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 576 (798)
+|++++|.+..+| ++.+++|++|++++|.... .+ .++.+++|+.+++......--. ++.+++|+.|++++|. .
T Consensus 131 ~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~-~~-~~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~--l 203 (457)
T 3bz5_A 131 YLNCARNTLTEID--VSHNTQLTELDCHLNKKIT-KL-DVTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNN--I 203 (457)
T ss_dssp EEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC-CC-CCTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSC--C
T ss_pred EEECCCCccceec--cccCCcCCEEECCCCCccc-cc-ccccCCcCCEEECCCCccceec-cccCCCCCEEECcCCc--C
Confidence 9999999998885 8899999999999995431 12 5678899999998853222224 7889999999999984 2
Q ss_pred hhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCc-------ccceEEEee
Q 048418 577 QFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMP-------LLQVLKLKQ 649 (798)
Q Consensus 577 ~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~-------~L~~L~L~~ 649 (798)
. .+ .+..+++|+.|++++|. ++.++ +.. +++|++|++++|.+.+..+..+.++. +|+.|++++
T Consensus 204 ~-~~--~l~~l~~L~~L~Ls~N~----l~~ip--~~~-l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 204 T-KL--DLNQNIQLTFLDCSSNK----LTEID--VTP-LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp S-CC--CCTTCTTCSEEECCSSC----CSCCC--CTT-CTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred C-ee--ccccCCCCCEEECcCCc----ccccC--ccc-cCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCC
Confidence 2 22 37889999999999977 44443 455 89999999999998775433333332 344445554
Q ss_pred ccccCCeeeeCCCCCccccEEEeecCCCCCccee--------cCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEe
Q 048418 650 NSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTM--------GTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCW 721 (798)
Q Consensus 650 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~--------~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 721 (798)
|...+. ++ .+.+++|+.|++++|..++.+|. .+..+++|+.|++++|.... +| +.++++|+.|+++
T Consensus 274 n~~~~~-~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 274 NTQLIY-FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCV 347 (457)
T ss_dssp CTTCCE-EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECC
T ss_pred CccCCc-cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECC
Confidence 444442 22 46789999999999988777664 24567888999998887544 54 8899999999999
Q ss_pred cCcHHHHHHHhcC------CCcccCCCceeEeeccccccccCCCCCCCc
Q 048418 722 WPQPELRQKLREF------EDKEQSIPPLAHFMEYESQITETEPPSLPS 764 (798)
Q Consensus 722 ~c~~~~~~~l~~~------~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~ 764 (798)
+|...-...+... ......+..+..+++++|.++|.+|+.+..
T Consensus 348 ~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 348 NAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp SSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred CCCCCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence 9963211111110 000112345677899999999999976543
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=3e-24 Score=252.29 Aligned_cols=341 Identities=17% Similarity=0.094 Sum_probs=226.3
Q ss_pred cccCCCCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcc-cccCcCccceEEecCCCccccChhhhh
Q 048418 412 YLDDYDSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPPSLLS 490 (798)
Q Consensus 412 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~ 490 (798)
+|..++++++.|.+.++.. ..+++..|.++++|++|+|++|.|+.+|. .|.+|++|++|+|++|+++.+|+..|.
T Consensus 46 vP~~lp~~~~~LdLs~N~i----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 46 IPDNLPFSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp CCSSSCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred cCCCCCcCCCEEEeeCCCC----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 4444467888888887765 24555678888889999998888886654 588888899999988888888887668
Q ss_pred CCCCCcEeeccccccccchh-hhcccccCceeccCCcccCCCCCC-CCCCCCCcceeecCCCC---cchhhhcC------
Q 048418 491 NLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISALHPC---CCTEDILG------ 559 (798)
Q Consensus 491 ~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~~~---~~~~~~l~------ 559 (798)
++++|++|++++|++..+|. .++++++|++|++++|.+.....| .++.++.|+.+++.... ..+.. +.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~ 200 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMP 200 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCT
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhh
Confidence 88888999888888888865 478888888888888888765566 66667777766654210 00000 00
Q ss_pred --------------------------------------------------------------------------------
Q 048418 560 -------------------------------------------------------------------------------- 559 (798)
Q Consensus 560 -------------------------------------------------------------------------------- 559 (798)
T Consensus 201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ---------------------------------------------CCCCCCeEEEecccchhh-----------------
Q 048418 560 ---------------------------------------------RLPNLRNLRIWGDLSYYQ----------------- 577 (798)
Q Consensus 560 ---------------------------------------------~l~~L~~L~l~~~~~~~~----------------- 577 (798)
.+.+|+.|++.++.-...
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~ 360 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 360 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence 001111222211100000
Q ss_pred hhHHHhccCCCCCCEEEEecCCC------------CCCCceeee----------ecCCCCCCeeEEEEEeccCCCC-Ccc
Q 048418 578 FLLSQSLCRLSCLESLKLVNESK------------MPAFSKIVL----------VEYQFPPRLTHLSFSNTELMED-PMP 634 (798)
Q Consensus 578 ~~l~~~l~~l~~L~~L~l~~n~i------------~~~L~~L~l----------~~~~~l~~L~~L~L~~~~l~~~-~~~ 634 (798)
...+.....+++|+.|+++.|.+ ..+++.+.. .+.. +++|+.+++..+..... ...
T Consensus 361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~-l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTT-CTTCCEEECTTSEEESTTSSC
T ss_pred CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccc-cccccchhhhhcccccccccc
Confidence 00000011234566666655442 234444443 2333 67888888877654433 334
Q ss_pred ccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCc-ceecCCcccccceeeEeeCCCCCCCCccCCCCC
Q 048418 635 ALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEE-WTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIK 713 (798)
Q Consensus 635 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 713 (798)
.+..+++++.++++.|.+... .+..+..+++|+.|++++|..... .|..+..+++|+.|++++|......|..+.+++
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~ 518 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccccccccccccccccccccc-cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC
Confidence 567788888888887776553 244566788889999888765554 456678888899999988876555577788888
Q ss_pred CCCEEEEecCcHHHHHHHhc-CCCcccCCCceeEeeccccccccCCCCCCCcc
Q 048418 714 SLNKFDCWWPQPELRQKLRE-FEDKEQSIPPLAHFMEYESQITETEPPSLPSQ 765 (798)
Q Consensus 714 ~L~~L~l~~c~~~~~~~l~~-~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l 765 (798)
+|++|+|++|.. .. ....+..+++|+.|++++|++++..|..+.++
T Consensus 519 ~L~~L~Ls~N~l------~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 519 SLQVLNMSHNNF------FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp TCCEEECTTSCC------CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CCCEEECCCCcC------CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 899999988852 22 33346778888999999999888888777655
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.4e-24 Score=237.66 Aligned_cols=299 Identities=15% Similarity=0.117 Sum_probs=241.3
Q ss_pred ccCceeEEEecCcccccCccc-ccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccch-hhhcccccCcee
Q 048418 444 MFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA-DEFWKMNKLKHL 521 (798)
Q Consensus 444 ~~~~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L 521 (798)
.++++++|+++++.++.+|.. +..+++|++|++++|.+..+|...|+++++|++|++++|.+..+| ..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 578999999999999988876 688999999999999999888755599999999999999998885 558999999999
Q ss_pred ccCCcccCCCCCC-C-CCCCCCcceeecCCC---CcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEe
Q 048418 522 NFGSITLPAHPGK-Y-CGSLENLNFISALHP---CCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLV 596 (798)
Q Consensus 522 ~L~~~~i~~~~~p-~-i~~L~~L~~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~ 596 (798)
++++|.+. .+| . ++++++|+.+++... ...+.. ++.+++|+.|+++++. .. .+ .+..+++|+.|+++
T Consensus 123 ~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--l~-~~--~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 123 VLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNR--LT-HV--DLSLIPSLFHANVS 194 (390)
T ss_dssp ECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSC--CS-BC--CGGGCTTCSEEECC
T ss_pred ECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhh-ccCCCCCCEEECCCCc--CC-cc--ccccccccceeecc
Confidence 99999987 366 4 589999999999852 223344 8899999999999984 22 22 35677899999999
Q ss_pred cCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCC
Q 048418 597 NESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSML 676 (798)
Q Consensus 597 ~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 676 (798)
+|. +..+. . .++|++|++++|.+... +. ...++|+.|++++|.+++. ..+..+++|+.|++++|.
T Consensus 195 ~n~----l~~~~----~-~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 195 YNL----LSTLA----I-PIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp SSC----CSEEE----C-CSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC
T ss_pred ccc----ccccC----C-CCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc---HHHcCCCCccEEECCCCc
Confidence 866 55443 2 68899999999987543 22 3458999999999988873 356789999999999985
Q ss_pred CCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeecccccccc
Q 048418 677 WLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITE 756 (798)
Q Consensus 677 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~ 756 (798)
.....+..+..+++|+.|++++|. +..+|..+..+++|+.|++++|+. ...+..+..+++|+.|++++|.++.
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 260 LEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL------LHVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCC------CCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcc------eecCccccccCcCCEEECCCCccce
Confidence 444457778899999999999987 455788788899999999999962 2233446678999999999999998
Q ss_pred CCCCCCCcccccchhh
Q 048418 757 TEPPSLPSQRKLKFGL 772 (798)
Q Consensus 757 ~~p~~l~~l~~L~~~~ 772 (798)
..+..+.++..|.+..
T Consensus 333 ~~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 333 LKLSTHHTLKNLTLSH 348 (390)
T ss_dssp CCCCTTCCCSEEECCS
T ss_pred eCchhhccCCEEEcCC
Confidence 8666777777665543
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=9.1e-24 Score=250.61 Aligned_cols=150 Identities=14% Similarity=0.050 Sum_probs=89.7
Q ss_pred CeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCC--------------------
Q 048418 617 RLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSML-------------------- 676 (798)
Q Consensus 617 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-------------------- 676 (798)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+.+......+.++++|++|++++|.
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 455555555555544555666677777777776665432222334444555555554442
Q ss_pred ----C--CCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhc------CCCcccCCCce
Q 048418 677 ----W--LEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLRE------FEDKEQSIPPL 744 (798)
Q Consensus 677 ----~--l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~------~~~~i~~l~~L 744 (798)
. +...|..++.+++|+.|++++|......|..+..+++|+.|++++|... .+.. ....+.++++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA---RLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG---GGGSTTSTTSCCCTTTTCTTC
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc---ccchhhccCCcchhhcCCCCC
Confidence 1 1244566677888888888888755444445778888888888888632 1110 11225677788
Q ss_pred eEeeccccccccCCCCCCCcccccc
Q 048418 745 AHFMEYESQITETEPPSLPSQRKLK 769 (798)
Q Consensus 745 ~~l~l~~n~l~~~~p~~l~~l~~L~ 769 (798)
+.|++++|.++...+..|.++++|+
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCCCCCCCCHHHcccccCcc
Confidence 8888888888755444566666553
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=4.7e-24 Score=248.64 Aligned_cols=300 Identities=15% Similarity=0.115 Sum_probs=242.2
Q ss_pred ccCceeEEEecCcccccCccc-ccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCcee
Q 048418 444 MFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHL 521 (798)
Q Consensus 444 ~~~~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L 521 (798)
.++++++|+++++.+..+|.. ++.+++|++|+|++|.+..+|+..|+++++|++|+|++|.+..+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999988776 6889999999999999998887445999999999999999988865 57999999999
Q ss_pred ccCCcccCCCCCC-C-CCCCCCcceeecCC---CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEe
Q 048418 522 NFGSITLPAHPGK-Y-CGSLENLNFISALH---PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLV 596 (798)
Q Consensus 522 ~L~~~~i~~~~~p-~-i~~L~~L~~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~ 596 (798)
++++|.+. .+| . ++++++|+.++++. ....+.. ++.+++|+.|++++|. .. .+ .+..+++|+.|+++
T Consensus 129 ~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~--l~-~~--~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 129 VLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNR--LT-HV--DLSLIPSLFHANVS 200 (597)
T ss_dssp ECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSC--CS-BC--CGGGCTTCSEEECC
T ss_pred EeeCCCCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCC--CC-Cc--Chhhhhhhhhhhcc
Confidence 99999987 366 4 68999999999985 2333445 8899999999999984 22 22 25667899999999
Q ss_pred cCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCC
Q 048418 597 NESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSML 676 (798)
Q Consensus 597 ~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 676 (798)
+|. +..+. . +++|++|++++|.+..... . ..++|+.|++++|.+++. ..+..+++|+.|+|++|.
T Consensus 201 ~n~----l~~l~----~-~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 201 YNL----LSTLA----I-PIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp SSC----CSEEE----C-CTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC
T ss_pred cCc----ccccc----C-CchhheeeccCCccccccc-c--cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCc
Confidence 866 55442 2 7899999999998753222 1 237899999999998873 456789999999999986
Q ss_pred CCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeecccccccc
Q 048418 677 WLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITE 756 (798)
Q Consensus 677 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~ 756 (798)
.....|..++.+++|+.|++++|. +..+|..+..+++|+.|+|++|+.. ..+..+..+++|+.|++++|.+++
T Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~------~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 266 LEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL------HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC------CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred cCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC------ccCcccccCCCCCEEECCCCCCCC
Confidence 555557788999999999999987 4557888888999999999999732 234456789999999999999998
Q ss_pred CCCCCCCcccccchhhh
Q 048418 757 TEPPSLPSQRKLKFGLR 773 (798)
Q Consensus 757 ~~p~~l~~l~~L~~~~~ 773 (798)
..+..+.++..|.+...
T Consensus 339 ~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 339 LKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp CCCCTTCCCSEEECCSS
T ss_pred cChhhcCCCCEEEeeCC
Confidence 87777777777765443
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=1.8e-23 Score=225.23 Aligned_cols=287 Identities=16% Similarity=0.103 Sum_probs=184.1
Q ss_pred CceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccc-hhhhcccccCceeccC
Q 048418 446 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHLNFG 524 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~ 524 (798)
.++++++++++.++.+|..+. ++|++|++++|.++.+|...|+++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 367788888877777776654 5788888888888877764447888888888888877776 6777888888888888
Q ss_pred CcccCCCCCC-CCCCCCCcceeecCC---CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCC
Q 048418 525 SITLPAHPGK-YCGSLENLNFISALH---PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK 600 (798)
Q Consensus 525 ~~~i~~~~~p-~i~~L~~L~~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i 600 (798)
+|.+. .+| .+. ++|+.+++.. ....... +..+++|+.|+++++.-...+..+..+..+++|+.|++++|.
T Consensus 109 ~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~- 182 (330)
T 1xku_A 109 KNQLK--ELPEKMP--KTLQELRVHENEITKVRKSV-FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN- 182 (330)
T ss_dssp SSCCS--BCCSSCC--TTCCEEECCSSCCCBBCHHH-HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-
T ss_pred CCcCC--ccChhhc--ccccEEECCCCcccccCHhH-hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-
Confidence 87775 255 333 4555565553 1222333 777888888888877422223445567777888888887765
Q ss_pred CCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCc
Q 048418 601 MPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEE 680 (798)
Q Consensus 601 ~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 680 (798)
++.+.. .. .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++| .+..
T Consensus 183 ---l~~l~~--~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~ 254 (330)
T 1xku_A 183 ---ITTIPQ--GL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNN-KLVK 254 (330)
T ss_dssp ---CCSCCS--SC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSS-CCSS
T ss_pred ---cccCCc--cc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCC-cCcc
Confidence 222211 11 46778888888877666666777778888888877766542 2234556777888888776 4557
Q ss_pred ceecCCcccccceeeEeeCCCCCCCCc-cCC------CCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeecccc
Q 048418 681 WTMGTGAMPKLEFLIINPCAYLKKMPE-QLW------CIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYES 752 (798)
Q Consensus 681 l~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~------~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n 752 (798)
+|..+..+++|+.|++++|+... +|. .+. ..++|+.|++++||... .......+..+++++.+++++|
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~---~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQY---WEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCG---GGSCGGGGTTCCCGGGEEC---
T ss_pred CChhhccCCCcCEEECCCCcCCc-cChhhcCCcccccccccccceEeecCcccc---cccCccccccccceeEEEeccc
Confidence 77777777778888877776433 332 222 23566777777776321 1112234455666666666665
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.1e-23 Score=226.34 Aligned_cols=232 Identities=20% Similarity=0.160 Sum_probs=178.7
Q ss_pred ccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceecc
Q 048418 444 MFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNF 523 (798)
Q Consensus 444 ~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 523 (798)
..+.++.|+|+++.++.+|..++++++|++|+|++|.++.+|..+ +++++|++|++++|.+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 457899999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred CCcccCCCCCC-CCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCC
Q 048418 524 GSITLPAHPGK-YCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMP 602 (798)
Q Consensus 524 ~~~~i~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~ 602 (798)
++|.+. ..+| .++.. ..... ++.+++|+.|++++|. ...+|.
T Consensus 158 ~~n~~~-~~~p~~~~~~------------~~~~~-~~~l~~L~~L~L~~n~---l~~lp~-------------------- 200 (328)
T 4fcg_A 158 RACPEL-TELPEPLAST------------DASGE-HQGLVNLQSLRLEWTG---IRSLPA-------------------- 200 (328)
T ss_dssp EEETTC-CCCCSCSEEE------------C-CCC-EEESTTCCEEEEEEEC---CCCCCG--------------------
T ss_pred CCCCCc-cccChhHhhc------------cchhh-hccCCCCCEEECcCCC---cCcchH--------------------
Confidence 998765 2233 22210 00111 3445556666665551 112222
Q ss_pred CCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce
Q 048418 603 AFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT 682 (798)
Q Consensus 603 ~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 682 (798)
++.. +++|++|++++|.+. ..++.++.+++|+.|++++|.+.+. ++..+..+++|++|++++|.....+|
T Consensus 201 -------~l~~-l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 201 -------SIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp -------GGGG-CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred -------hhcC-CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcc
Confidence 2333 667777777777765 3455678888888888887777664 46667788888888888888888888
Q ss_pred ecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecC
Q 048418 683 MGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWP 723 (798)
Q Consensus 683 ~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 723 (798)
..++.+++|+.|++++|+.++.+|..+.++++|+.+++..+
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88888888888888888888888888888888888888765
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=3.5e-23 Score=223.06 Aligned_cols=286 Identities=16% Similarity=0.119 Sum_probs=166.9
Q ss_pred ceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccc-hhhhcccccCceeccCC
Q 048418 447 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHLNFGS 525 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~ 525 (798)
++++++++++.++.+|..+. ++|++|++++|.+..+++..|+++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 57788888887777777664 5788888888887777654337888888888888877766 66777888888888888
Q ss_pred cccCCCCCC-CCCCCCCcceeecCCC--CcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCC
Q 048418 526 ITLPAHPGK-YCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMP 602 (798)
Q Consensus 526 ~~i~~~~~p-~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~ 602 (798)
|.+. .+| .+. ++|+.+++... ...+...+..+++|+.|+++++.-......+..+..+ +|+.|++++|.
T Consensus 112 n~l~--~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~--- 183 (332)
T 2ft3_A 112 NHLV--EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK--- 183 (332)
T ss_dssp SCCC--SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB---
T ss_pred CcCC--ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC---
Confidence 7775 245 333 45555555531 1222222667777777777776321122334445555 66666666654
Q ss_pred CCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce
Q 048418 603 AFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT 682 (798)
Q Consensus 603 ~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 682 (798)
++.+... . .++|++|++++|.+....+..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++| .+..+|
T Consensus 184 -l~~l~~~--~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~lp 257 (332)
T 2ft3_A 184 -LTGIPKD--L-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRELHLDNN-KLSRVP 257 (332)
T ss_dssp -CSSCCSS--S-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTTGGGGCTTCCEEECCSS-CCCBCC
T ss_pred -CCccCcc--c-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-ChhHhhCCCCCCEEECCCC-cCeecC
Confidence 2222111 1 35666677777766655556666677777777776666542 1223455666777777665 455666
Q ss_pred ecCCcccccceeeEeeCCCCCCCC-ccCCC------CCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeecccc
Q 048418 683 MGTGAMPKLEFLIINPCAYLKKMP-EQLWC------IKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYES 752 (798)
Q Consensus 683 ~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~------l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n 752 (798)
..++.+++|+.|++++|... .+| ..+.. .++|+.|++++|+... .......+..+++|+.+++++|
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~---~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPY---WEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCG---GGSCGGGGTTBCCSTTEEC---
T ss_pred hhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccc---cccCcccccccchhhhhhcccc
Confidence 66666666777777666533 232 22221 3455666666665210 0112223344555555555554
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=8.6e-23 Score=239.86 Aligned_cols=315 Identities=17% Similarity=0.113 Sum_probs=223.7
Q ss_pred CceeEEEecCcccccCc-ccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L 523 (798)
+.+++|+|++|.|+.+| .+|.++++|++|+|++|.++.+|+..|.+|++|++|+|++|++..+|. .+.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36999999999999776 479999999999999999999998766999999999999999999975 5899999999999
Q ss_pred CCcccCCCCCC--CCCCCCCcceeecCCC----CcchhhhcCCCCCCCeEEEecccch-----hhh--------------
Q 048418 524 GSITLPAHPGK--YCGSLENLNFISALHP----CCCTEDILGRLPNLRNLRIWGDLSY-----YQF-------------- 578 (798)
Q Consensus 524 ~~~~i~~~~~p--~i~~L~~L~~l~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~-------------- 578 (798)
++|.+.. +| .+++|++|+.+++... ...+.. ++.+++|+.|+++++.-. ...
T Consensus 132 s~N~l~~--l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 132 VETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp TTSCCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred CCCcCCC--CChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999864 55 6889999999999852 223455 888999999999887400 000
Q ss_pred -------------------------------hHHHhccCCCCCCEEEEec------------------------------
Q 048418 579 -------------------------------LLSQSLCRLSCLESLKLVN------------------------------ 597 (798)
Q Consensus 579 -------------------------------~l~~~l~~l~~L~~L~l~~------------------------------ 597 (798)
..+..+..+..++...+..
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 0011111222222222111
Q ss_pred ---------------------------CCC--------CCCCceeee------------------------------ecC
Q 048418 598 ---------------------------ESK--------MPAFSKIVL------------------------------VEY 612 (798)
Q Consensus 598 ---------------------------n~i--------~~~L~~L~l------------------------------~~~ 612 (798)
+.+ +.+++.|.+ ...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 000 111222211 001
Q ss_pred CCCCCeeEEEEEeccCCCC-------------------------CccccccCcccceEEEeeccccCCeeeeCCCCCccc
Q 048418 613 QFPPRLTHLSFSNTELMED-------------------------PMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNL 667 (798)
Q Consensus 613 ~~l~~L~~L~L~~~~l~~~-------------------------~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L 667 (798)
. +++|+.|+++.|.+... ....+..+++|+.+++.++..........+..+++|
T Consensus 369 ~-l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 D-LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp B-CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred c-ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 1 34555555555433210 112234566777777776665554444556788999
Q ss_pred cEEEeecCCCCCcceecCCcccccceeeEeeCCCCC-CCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeE
Q 048418 668 KVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLK-KMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAH 746 (798)
Q Consensus 668 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~ 746 (798)
+.++++.|......+..+..+++|+.|++++|.... ..|..+..+++|+.|+|++|... ...+..+..+++|+.
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~-----~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-----QLSPTAFNSLSSLQV 522 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-----EECTTTTTTCTTCCE
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC-----CcChHHHcCCCCCCE
Confidence 999999986544556677889999999999998655 36778899999999999999622 113455778999999
Q ss_pred eeccccccccCCCCCCCcccccc
Q 048418 747 FMEYESQITETEPPSLPSQRKLK 769 (798)
Q Consensus 747 l~l~~n~l~~~~p~~l~~l~~L~ 769 (798)
|++++|++++..|..|..+++|+
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCC
T ss_pred EECCCCcCCCCChhHHhCCCCCC
Confidence 99999999999888888887774
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=9.2e-24 Score=225.51 Aligned_cols=247 Identities=19% Similarity=0.231 Sum_probs=143.7
Q ss_pred CceeEEEecCcccc---cCcccccCcCccceEEecC-CCcc-ccChhhhhCCCCCcEeeccccccc-cchhhhcccccCc
Q 048418 446 KLLRVLDLGSLVLI---QYPSGIENLFLLRYLKLNI-PSLK-SLPPSLLSNLPNLYTLDMPFSYID-HTADEFWKMNKLK 519 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~---~lp~~i~~L~~Lr~L~L~~-~~i~-~lp~~i~~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~ 519 (798)
.+++.|+|+++.+. .+|..++++++|++|++++ |.+. .+|..+ +++++|++|++++|.+. .+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 46788888888876 5777888888888888884 6666 677776 88888888888888776 6677788888888
Q ss_pred eeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCC
Q 048418 520 HLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNES 599 (798)
Q Consensus 520 ~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~ 599 (798)
+|++++|.+. ...+.. ++.+++|+.|++++| ...+.+|..+..++
T Consensus 129 ~L~Ls~N~l~---------------------~~~p~~-~~~l~~L~~L~L~~N--~l~~~~p~~l~~l~----------- 173 (313)
T 1ogq_A 129 TLDFSYNALS---------------------GTLPPS-ISSLPNLVGITFDGN--RISGAIPDSYGSFS----------- 173 (313)
T ss_dssp EEECCSSEEE---------------------SCCCGG-GGGCTTCCEEECCSS--CCEEECCGGGGCCC-----------
T ss_pred EEeCCCCccC---------------------CcCChH-HhcCCCCCeEECcCC--cccCcCCHHHhhhh-----------
Confidence 8888887775 223334 566666677766666 23333444444443
Q ss_pred CCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCC
Q 048418 600 KMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLE 679 (798)
Q Consensus 600 i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 679 (798)
++|++|++++|.+.+..+..++.++ |+.|++++|.+.+. .+..+..+++|+.|++++|....
T Consensus 174 ----------------~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 174 ----------------KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp ----------------TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC-CGGGCCTTSCCSEEECCSSEECC
T ss_pred ----------------hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc-CCHHHhcCCCCCEEECCCCceee
Confidence 1333344444433333344444443 55555554444432 23334445555555555542221
Q ss_pred cceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccc
Q 048418 680 EWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQ 753 (798)
Q Consensus 680 ~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~ 753 (798)
..+ .+..+++|++|++++|.....+|..+..+++|+.|++++|+ +....+...++++|+.+++++|.
T Consensus 236 ~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~------l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN------LCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE------EEEECCCSTTGGGSCGGGTCSSS
T ss_pred ecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc------ccccCCCCccccccChHHhcCCC
Confidence 222 24455556666666555544555555566666666666664 11122223456666666666665
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2.1e-22 Score=216.40 Aligned_cols=235 Identities=17% Similarity=0.170 Sum_probs=185.8
Q ss_pred cCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeec
Q 048418 468 LFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISA 547 (798)
Q Consensus 468 L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~ 547 (798)
..++++|+|++|.+..+|..+ +++++|++|++++|.+..+|..++++++|++|++++|.+.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~------------------ 140 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR------------------ 140 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC------------------
T ss_pred ccceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc------------------
Confidence 578999999999999999998 8899999999999999999999999999999999999875
Q ss_pred CCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEecc
Q 048418 548 LHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTE 627 (798)
Q Consensus 548 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~ 627 (798)
..+.. ++++++|+.|++++| ...+.+|..+.. ..+.+ .+.. +++|++|++++|.
T Consensus 141 ----~lp~~-l~~l~~L~~L~L~~n--~~~~~~p~~~~~------~~~~~------------~~~~-l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 141 ----ALPAS-IASLNRLRELSIRAC--PELTELPEPLAS------TDASG------------EHQG-LVNLQSLRLEWTG 194 (328)
T ss_dssp ----CCCGG-GGGCTTCCEEEEEEE--TTCCCCCSCSEE------EC-CC------------CEEE-STTCCEEEEEEEC
T ss_pred ----cCcHH-HhcCcCCCEEECCCC--CCccccChhHhh------ccchh------------hhcc-CCCCCEEECcCCC
Confidence 22344 777888888888887 233333322211 11111 1233 7899999999998
Q ss_pred CCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCc
Q 048418 628 LMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPE 707 (798)
Q Consensus 628 l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 707 (798)
++ ..+..++.+++|+.|++++|.+++ ++..+..+++|++|++++|.....+|..++.+++|+.|++++|..++.+|.
T Consensus 195 l~-~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 195 IR-SLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CC-CCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred cC-cchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 86 677788999999999999888875 455677889999999999888888888888899999999999988888888
Q ss_pred cCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccc
Q 048418 708 QLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQIT 755 (798)
Q Consensus 708 ~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~ 755 (798)
.+.++++|+.|+|++|+.. ...+..+.++++++.+++..+.+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~-----~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNL-----SRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TGGGCTTCCEEECTTCTTC-----CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhcCCCCCEEeCCCCCch-----hhccHHHhhccCceEEeCCHHHHH
Confidence 8888888888888888621 335566777888888877766554
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1e-22 Score=217.31 Aligned_cols=152 Identities=17% Similarity=0.261 Sum_probs=118.5
Q ss_pred CCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecC-cccc-cCcccccCcCccceEEecCCCcc-ccChhhhhCCCC
Q 048418 418 SHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGS-LVLI-QYPSGIENLFLLRYLKLNIPSLK-SLPPSLLSNLPN 494 (798)
Q Consensus 418 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~-~~i~-~lp~~i~~L~~Lr~L~L~~~~i~-~lp~~i~~~L~~ 494 (798)
.+++.|.+.++.... ....+..+.++++|++|++++ |.+. .+|..++++++|++|++++|.++ .+|..+ +++++
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTT
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCC
Confidence 689999998876521 003346788999999999995 7777 89999999999999999999998 788888 99999
Q ss_pred CcEeeccccccc-cchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCC-CCCeEEEecc
Q 048418 495 LYTLDMPFSYID-HTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLP-NLRNLRIWGD 572 (798)
Q Consensus 495 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 572 (798)
|++|++++|.+. .+|..+..+++|++|++++|.+. +..+.. ++.++ +|+.|+++++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~---------------------~~~p~~-l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS---------------------GAIPDS-YGSFSKLFTSMTISRN 184 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE---------------------EECCGG-GGCCCTTCCEEECCSS
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc---------------------CcCCHH-HhhhhhcCcEEECcCC
Confidence 999999999887 67999999999999999999885 233444 66666 7888888777
Q ss_pred cchhhhhHHHhccCCCCCCEEEEec
Q 048418 573 LSYYQFLLSQSLCRLSCLESLKLVN 597 (798)
Q Consensus 573 ~~~~~~~l~~~l~~l~~L~~L~l~~ 597 (798)
...+.+|..+..++ |+.|++++
T Consensus 185 --~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 185 --RLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp --EEEEECCGGGGGCC-CSEEECCS
T ss_pred --eeeccCChHHhCCc-ccEEECcC
Confidence 23334444444443 55555444
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=9.9e-22 Score=211.55 Aligned_cols=259 Identities=15% Similarity=0.109 Sum_probs=187.9
Q ss_pred CceeEEEecCcccccCcc-cccCcCccceEEecCCCcccc-ChhhhhCCCCCcEeeccccccccchhhhcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSL-PPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~l-p~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 523 (798)
+.|++|++++|.++.++. .++++++|++|++++|.++.+ |..+ +++++|++|++++|.+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 567777777777775554 577777778888777777766 4444 777777888887777777776554 67777777
Q ss_pred CCcccCCCCCC--CCCCCCCcceeecCCCC-----cchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEe
Q 048418 524 GSITLPAHPGK--YCGSLENLNFISALHPC-----CCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLV 596 (798)
Q Consensus 524 ~~~~i~~~~~p--~i~~L~~L~~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~ 596 (798)
++|.+.. ++ .+.++++|+.+++.... ..+.. +..+++|+.|+++++. ...+|..+. ++|+.|+++
T Consensus 129 ~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 129 HENEITK--VRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTN---ITTIPQGLP--PSLTELHLD 200 (330)
T ss_dssp CSSCCCB--BCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSC---CCSCCSSCC--TTCSEEECT
T ss_pred CCCcccc--cCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCc---cccCCcccc--ccCCEEECC
Confidence 7777652 33 46677777777776421 23344 7889999999999883 333444332 789999999
Q ss_pred cCCCCCCCceeee-ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecC
Q 048418 597 NESKMPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSM 675 (798)
Q Consensus 597 ~n~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 675 (798)
+|. ++.+.. .+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ++..+..+++|++|++++|
T Consensus 201 ~n~----l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 201 GNK----ITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp TSC----CCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSS
T ss_pred CCc----CCccCHHHhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEECCCC
Confidence 876 444322 4555 8999999999999877666788999999999999998874 5667788999999999998
Q ss_pred CCCCcceec-C------CcccccceeeEeeCCCCC--CCCccCCCCCCCCEEEEecC
Q 048418 676 LWLEEWTMG-T------GAMPKLEFLIINPCAYLK--KMPEQLWCIKSLNKFDCWWP 723 (798)
Q Consensus 676 ~~l~~l~~~-~------~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c 723 (798)
. ++.++.. + ...+.|+.|++++|+... ..|..+..+++|+.+++++|
T Consensus 274 ~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 N-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp C-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred c-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 4 5555432 2 135789999999998643 44677888999999999987
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=9.5e-22 Score=211.85 Aligned_cols=280 Identities=16% Similarity=0.108 Sum_probs=205.7
Q ss_pred CceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCCcE
Q 048418 419 HLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYT 497 (798)
Q Consensus 419 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 497 (798)
+++.+.+.++.... ++..+ .+.|++|++++|.++.+ |..++++++|++|++++|.++.+++..|+++++|++
T Consensus 34 ~l~~l~~~~~~l~~----ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA----VPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSS----CCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred cCCEEECCCCCccc----cCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 56777766655422 22211 35788888888888855 457888888999999888888774443388888999
Q ss_pred eeccccccccchhhhcccccCceeccCCcccCCCCCC--CCCCCCCcceeecCCCC-----cchhhhcCCCCCCCeEEEe
Q 048418 498 LDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGK--YCGSLENLNFISALHPC-----CCTEDILGRLPNLRNLRIW 570 (798)
Q Consensus 498 L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p--~i~~L~~L~~l~~~~~~-----~~~~~~l~~l~~L~~L~l~ 570 (798)
|++++|.+..+|..+. ++|++|++++|.+.. +| .+..+++|+.+++.... ..+.. +..+ +|+.|+++
T Consensus 107 L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 107 LYISKNHLVEIPPNLP--SSLVELRIHDNRIRK--VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRIS 180 (332)
T ss_dssp EECCSSCCCSCCSSCC--TTCCEEECCSSCCCC--CCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCC
T ss_pred EECCCCcCCccCcccc--ccCCEEECCCCccCc--cCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECc
Confidence 9998888888887665 788889888888863 44 57788888888887532 22334 6666 89999999
Q ss_pred cccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeee-ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEee
Q 048418 571 GDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQ 649 (798)
Q Consensus 571 ~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 649 (798)
++. ...+|..+. ++|+.|++++|. ++.+.. .+.. +++|++|++++|.+.+..+..++.+++|+.|++++
T Consensus 181 ~n~---l~~l~~~~~--~~L~~L~l~~n~----i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 181 EAK---LTGIPKDLP--ETLNELHLDHNK----IQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp SSB---CSSCCSSSC--SSCSCCBCCSSC----CCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred CCC---CCccCcccc--CCCCEEECCCCc----CCccCHHHhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 883 333444433 689999999876 332221 3445 89999999999998877777899999999999999
Q ss_pred ccccCCeeeeCCCCCccccEEEeecCCCCCccee-cCC------cccccceeeEeeCCCC--CCCCccCCCCCCCCEEEE
Q 048418 650 NSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTM-GTG------AMPKLEFLIINPCAYL--KKMPEQLWCIKSLNKFDC 720 (798)
Q Consensus 650 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~------~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l 720 (798)
|.+.. ++..+..+++|+.|++++|. ++.++. .+. .++.|+.|++++|+.. ...|..+..+++|+.+++
T Consensus 251 N~l~~--lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 251 NKLSR--VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp SCCCB--CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred CcCee--cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 98873 56667889999999999984 555542 222 2578999999999965 455677889999999999
Q ss_pred ecCc
Q 048418 721 WWPQ 724 (798)
Q Consensus 721 ~~c~ 724 (798)
++|.
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 9884
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=2.8e-21 Score=216.80 Aligned_cols=266 Identities=22% Similarity=0.190 Sum_probs=148.8
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
.++++.|.+.++.... ++ ..+++|++|++++|.++.+|.. .++|++|++++|.++.+| .+ +++++|+
T Consensus 90 ~~~L~~L~l~~n~l~~----lp----~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~-~~l~~L~ 156 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE----LP----ELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-EL-QNSSFLK 156 (454)
T ss_dssp CTTCSEEECCSSCCSS----CC----CCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CC-TTCTTCC
T ss_pred cCCCCEEEccCCcCCc----cc----cccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-cc-CCCCCCC
Confidence 5677888777665422 11 1236778888888777665532 157888888888877777 35 7888888
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchh
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY 576 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 576 (798)
+|++++|.+..+|..+ .+|++|++++|.+.. +|.++++++|+.+++.... +...-...++|+.|++++|.
T Consensus 157 ~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~--l~~~~~l~~L~~L~l~~N~--l~~l~~~~~~L~~L~l~~n~--- 226 (454)
T 1jl5_A 157 IIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNS--LKKLPDLPLSLESIVAGNNI--- 226 (454)
T ss_dssp EEECCSSCCSCCCCCC---TTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSC--CSSCCCCCTTCCEEECCSSC---
T ss_pred EEECCCCcCcccCCCc---ccccEEECcCCcCCc--CccccCCCCCCEEECCCCc--CCcCCCCcCcccEEECcCCc---
Confidence 8888888777776543 478888888877754 5667777777777776421 11100122467788877773
Q ss_pred hhhHHHhccCCCCCCEEEEecCCC------CCCCceeee------ecCCCCCCeeEEEEEeccCCCCCccccccCcccce
Q 048418 577 QFLLSQSLCRLSCLESLKLVNESK------MPAFSKIVL------VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQV 644 (798)
Q Consensus 577 ~~~l~~~l~~l~~L~~L~l~~n~i------~~~L~~L~l------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 644 (798)
...+| .+..+++|+.|++++|.+ +++|+.|.+ .+...+++|++|++++|.+.+. +.+ .++|+.
T Consensus 227 l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l--~~~--~~~L~~ 301 (454)
T 1jl5_A 227 LEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL--SEL--PPNLYY 301 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE--SCC--CTTCCE
T ss_pred CCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcc--cCc--CCcCCE
Confidence 22445 367777888888877652 122333322 0111134455555555443320 000 134555
Q ss_pred EEEeeccccCCeeeeCCCCC-ccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecC
Q 048418 645 LKLKQNSYSGRKLTCGSDGF-PNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWP 723 (798)
Q Consensus 645 L~L~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 723 (798)
|++++|.+++ ++ .+ ++|+.|++++| .+..+|.. +++|+.|++++|. +..+|. .+++|+.|++++|
T Consensus 302 L~l~~N~l~~--i~----~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 302 LNASSNEIRS--LC----DLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp EECCSSCCSE--EC----CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS
T ss_pred EECcCCcCCc--cc----CCcCcCCEEECCCC-cccccccc---CCcCCEEECCCCc-cccccc---hhhhccEEECCCC
Confidence 5555444432 11 12 35555555554 23334322 4555666665554 234554 3455666666555
Q ss_pred c
Q 048418 724 Q 724 (798)
Q Consensus 724 ~ 724 (798)
+
T Consensus 368 ~ 368 (454)
T 1jl5_A 368 P 368 (454)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=1.6e-21 Score=218.74 Aligned_cols=309 Identities=17% Similarity=0.090 Sum_probs=144.4
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-cCcccccCcCcc-------------ceEEecCCCcc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-QYPSGIENLFLL-------------RYLKLNIPSLK 482 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------r~L~L~~~~i~ 482 (798)
..+||.|.+.++... .++..+.++++|++|++++|.+. .+|.+++++.+| ++|++++|.++
T Consensus 10 ~~~L~~L~l~~n~l~-----~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLT-----EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred cccchhhhcccCchh-----hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 345555555544331 12233455555555555555554 555555554433 44555544444
Q ss_pred ccChhh----------------hhCCCCCcEeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceee
Q 048418 483 SLPPSL----------------LSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFIS 546 (798)
Q Consensus 483 ~lp~~i----------------~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~ 546 (798)
.+|... -..+.+|++|++++|.+..+|.. .++|++|++++|.+.. +|.++++++|+.++
T Consensus 85 ~lp~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~--lp~~~~l~~L~~L~ 159 (454)
T 1jl5_A 85 SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK--LPELQNSSFLKIID 159 (454)
T ss_dssp CCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS--CCCCTTCTTCCEEE
T ss_pred cCCCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC--CcccCCCCCCCEEE
Confidence 444311 00113444444444444433321 1456666666665542 55555666666666
Q ss_pred cCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCC------CCCCceeee---------ec
Q 048418 547 ALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESK------MPAFSKIVL---------VE 611 (798)
Q Consensus 547 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i------~~~L~~L~l---------~~ 611 (798)
++... +...-...++|+.|++++|. ...+| .++.+++|+.|++++|.+ +++|+.|.+ .+
T Consensus 160 l~~N~--l~~lp~~~~~L~~L~L~~n~---l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~ 233 (454)
T 1jl5_A 160 VDNNS--LKKLPDLPPSLEFIAAGNNQ---LEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 233 (454)
T ss_dssp CCSSC--CSCCCCCCTTCCEEECCSSC---CSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCC
T ss_pred CCCCc--CcccCCCcccccEEECcCCc---CCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccccc
Confidence 65311 00100112356666666652 22233 456666667776666542 223444433 12
Q ss_pred CCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCccee---c----
Q 048418 612 YQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTM---G---- 684 (798)
Q Consensus 612 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~---~---- 684 (798)
.. +++|++|++++|.+.+ .+. .+++|+.|++++|.+.+ ++. .+++|+.|++++|. +..++. .
T Consensus 234 ~~-l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~--l~~---~~~~L~~L~ls~N~-l~~l~~~~~~L~~L 302 (454)
T 1jl5_A 234 QN-LPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD--LPE---LPQSLTFLDVSENI-FSGLSELPPNLYYL 302 (454)
T ss_dssp TT-CTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSEESCCCTTCCEE
T ss_pred CC-CCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc--cCc---ccCcCCEEECcCCc-cCcccCcCCcCCEE
Confidence 22 4555666665555442 111 12455555555444443 111 12445555555542 222111 0
Q ss_pred ---------CCcc-cccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeecccccc
Q 048418 685 ---------TGAM-PKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQI 754 (798)
Q Consensus 685 ---------~~~l-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l 754 (798)
+..+ ++|+.|++++|... .+|.. +++|+.|++++|... ..+. .+++|+.|++++|.+
T Consensus 303 ~l~~N~l~~i~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~l~-------~lp~--~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 303 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-------EVPE--LPQNLKQLHVEYNPL 369 (454)
T ss_dssp ECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-------CCCC--CCTTCCEEECCSSCC
T ss_pred ECcCCcCCcccCCcCcCCEEECCCCccc-ccccc---CCcCCEEECCCCccc-------cccc--hhhhccEEECCCCCC
Confidence 1122 47777777777643 46653 578888888888522 1222 468899999999999
Q ss_pred cc--CCCCCCCcc
Q 048418 755 TE--TEPPSLPSQ 765 (798)
Q Consensus 755 ~~--~~p~~l~~l 765 (798)
++ .+|.++..+
T Consensus 370 ~~l~~ip~~l~~L 382 (454)
T 1jl5_A 370 REFPDIPESVEDL 382 (454)
T ss_dssp SSCCCCCTTCCEE
T ss_pred CcCCCChHHHHhh
Confidence 99 778887666
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.6e-23 Score=236.42 Aligned_cols=178 Identities=17% Similarity=0.136 Sum_probs=129.3
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-----cCcccccCcCccceEEecCCCccc-cChhhhh
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLKS-LPPSLLS 490 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~ 490 (798)
++++++|.+.++... ...+..++..+++|++|++++|.++ .++..+..+++|++|++++|.+.. .+..++.
T Consensus 2 ~~~l~~L~Ls~~~l~---~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 2 SLDIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp CEEEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CccceehhhhhcccC---chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 357888999877642 2345566889999999999999987 567788889999999999999874 3444435
Q ss_pred CCC----CCcEeeccccccc-----cchhhhcccccCceeccCCcccCCCCCCC-----CCCCCCcceeecCCCCc----
Q 048418 491 NLP----NLYTLDMPFSYID-----HTADEFWKMNKLKHLNFGSITLPAHPGKY-----CGSLENLNFISALHPCC---- 552 (798)
Q Consensus 491 ~L~----~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~L~~~~i~~~~~p~-----i~~L~~L~~l~~~~~~~---- 552 (798)
.+. +|++|++++|.+. .+|..+.++++|++|++++|.+....+.. ...+.+|+.+++.....
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 566 7999999999876 56888999999999999999875321111 12456788888875321
Q ss_pred ---chhhhcCCCCCCCeEEEecccchhhhh----HHHhcc-CCCCCCEEEEecCCC
Q 048418 553 ---CTEDILGRLPNLRNLRIWGDLSYYQFL----LSQSLC-RLSCLESLKLVNESK 600 (798)
Q Consensus 553 ---~~~~~l~~l~~L~~L~l~~~~~~~~~~----l~~~l~-~l~~L~~L~l~~n~i 600 (798)
.+.. +..+++|+.|+++++. .... +...+. ..++|+.|++++|.+
T Consensus 159 ~~~l~~~-l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 159 CEPLASV-LRAKPDFKELTVSNND--INEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHH-HHHCTTCCEEECCSSB--CHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHH-HhhCCCCCEEECcCCC--cchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 1333 6778999999999984 3222 222222 356899999998663
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=5.6e-21 Score=203.30 Aligned_cols=241 Identities=17% Similarity=0.135 Sum_probs=126.3
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccc---hhhhcccccCceeccCC
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHT---ADEFWKMNKLKHLNFGS 525 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l---p~~i~~L~~L~~L~L~~ 525 (798)
+.++.+++.++.+|..+. ++|++|++++|.++.+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 356666666666666543 4677777777777766666556677777777777755544 45556667777777766
Q ss_pred cccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHH--HhccCCCCCCEEEEecCCCCCC
Q 048418 526 ITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLS--QSLCRLSCLESLKLVNESKMPA 603 (798)
Q Consensus 526 ~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~L~~L~l~~n~i~~~ 603 (798)
|.+.. .+.. +..+++|+.|+++++. ...++ ..+..+++|+.|++++|.+
T Consensus 88 n~i~~----------------------l~~~-~~~l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l--- 138 (306)
T 2z66_A 88 NGVIT----------------------MSSN-FLGLEQLEHLDFQHSN---LKQMSEFSVFLSLRNLIYLDISHTHT--- 138 (306)
T ss_dssp CSEEE----------------------EEEE-EETCTTCCEEECTTSE---EESSTTTTTTTTCTTCCEEECTTSCC---
T ss_pred Ccccc----------------------Chhh-cCCCCCCCEEECCCCc---ccccccchhhhhccCCCEEECCCCcC---
Confidence 65531 1222 4445555555555541 11111 1233334444444443221
Q ss_pred Cceeee-ecCCCCCCeeEEEEEeccCCC-CCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcc
Q 048418 604 FSKIVL-VEYQFPPRLTHLSFSNTELME-DPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEW 681 (798)
Q Consensus 604 L~~L~l-~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 681 (798)
..... .+.. +++|++|++++|.+.+ ..+..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|. +..+
T Consensus 139 -~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~ 214 (306)
T 2z66_A 139 -RVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSSLQVLNMSHNN-FFSL 214 (306)
T ss_dssp -EECSTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC-CSBC
T ss_pred -Cccchhhccc-CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc-CHHHhcCCCCCCEEECCCCc-cCcc
Confidence 10000 1122 4555555555555443 2344555666666666665555431 23344555666666666653 3333
Q ss_pred -eecCCcccccceeeEeeCCCCCCCCccCCCCC-CCCEEEEecCc
Q 048418 682 -TMGTGAMPKLEFLIINPCAYLKKMPEQLWCIK-SLNKFDCWWPQ 724 (798)
Q Consensus 682 -~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~ 724 (798)
+..+..+++|+.|++++|......|..+..++ +|+.|++++|+
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 22345556666666666655444455555553 56666666554
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=6.4e-21 Score=207.23 Aligned_cols=251 Identities=15% Similarity=0.160 Sum_probs=135.3
Q ss_pred CceeEEEecCcccccCcc-cccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 523 (798)
++|++|++++|.++.+|. .+.++++|++|++++|.++.+++..|+++++|++|++++|.+..+|.. ++++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 356666666666664443 466666666666666666655443336666666666666666666544 566666666666
Q ss_pred CCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCC
Q 048418 524 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPA 603 (798)
Q Consensus 524 ~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~ 603 (798)
++|.+.. +| .... +..+++|+.|++++|. ......+..+..+++|+.|++++|.
T Consensus 132 ~~n~l~~--l~------------------~~~~-~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~---- 185 (353)
T 2z80_A 132 LGNPYKT--LG------------------ETSL-FSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASD---- 185 (353)
T ss_dssp TTCCCSS--SC------------------SSCS-CTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETT----
T ss_pred CCCCCcc--cC------------------chhh-hccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCC----
Confidence 6665531 11 0013 6677888888888762 0112223455666677777777655
Q ss_pred Cceeee-ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeee--eCCCCCccccEEEeecCCCCC-
Q 048418 604 FSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLT--CGSDGFPNLKVLHLKSMLWLE- 679 (798)
Q Consensus 604 L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~l~- 679 (798)
+..+.. ++.. +++|++|++++|.+.......+..+++|+.|++++|.+++.... ......+.++.++++++....
T Consensus 186 l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 186 LQSYEPKSLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp CCEECTTTTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred cCccCHHHHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 222211 2333 56677777777765332222234566777777776666542211 011234455566665542211
Q ss_pred ---cceecCCcccccceeeEeeCCCCCCCCccC-CCCCCCCEEEEecCc
Q 048418 680 ---EWTMGTGAMPKLEFLIINPCAYLKKMPEQL-WCIKSLNKFDCWWPQ 724 (798)
Q Consensus 680 ---~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 724 (798)
.+|..++.+++|+.|++++|.. ..+|..+ ..+++|+.|++++|+
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhhhHHHHhcccCCCEEECCCCCC-CccCHHHHhcCCCCCEEEeeCCC
Confidence 2344455566666666666643 3455543 555666666666554
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.8e-20 Score=216.92 Aligned_cols=255 Identities=19% Similarity=0.080 Sum_probs=164.3
Q ss_pred CCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcE
Q 048418 418 SHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYT 497 (798)
Q Consensus 418 ~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~ 497 (798)
.+++.|.+.++.... ++..++ ++|++|+|++|.++.+|. .+++|++|+|++|.++.+|. .+++|++
T Consensus 40 ~~l~~L~ls~n~L~~----lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESGLTT----LPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSCCSC----CCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCE
T ss_pred CCCcEEEecCCCcCc----cChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCE
Confidence 356777776665432 222111 677888888888777776 46778888888888777775 4677888
Q ss_pred eeccccccccchhhhcccccCceeccCCcccCCCCCC-CCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchh
Q 048418 498 LDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY 576 (798)
Q Consensus 498 L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 576 (798)
|++++|.+..+|. .+++|++|++++|.+.. +| . +++|+.++++.+. +...-..+++|+.|++++|.
T Consensus 106 L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~--lp~~---l~~L~~L~Ls~N~--l~~l~~~~~~L~~L~L~~N~--- 172 (622)
T 3g06_A 106 LSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS--LPVL---PPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQ--- 172 (622)
T ss_dssp EEECSCCCCCCCC---CCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSC---
T ss_pred EECcCCcCCCCCC---CCCCcCEEECCCCCCCc--CCCC---CCCCCEEECcCCc--CCCcCCccCCCCEEECCCCC---
Confidence 8888887777776 56778888888877753 55 3 3556666665321 11101234567777777762
Q ss_pred hhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCe
Q 048418 577 QFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRK 656 (798)
Q Consensus 577 ~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 656 (798)
...+| ..+++|+.|++++|. ++.+. ..+++|+.|++++|.++. .+. .+++|+.|++++|.+++
T Consensus 173 l~~l~---~~~~~L~~L~Ls~N~----l~~l~----~~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-- 235 (622)
T 3g06_A 173 LTSLP---MLPSGLQELSVSDNQ----LASLP----TLPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-- 235 (622)
T ss_dssp CSCCC---CCCTTCCEEECCSSC----CSCCC----CCCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC--
T ss_pred CCCCc---ccCCCCcEEECCCCC----CCCCC----CccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc--
Confidence 22233 345677777777765 22221 115677788888777653 222 24678888888777665
Q ss_pred eeeCCCCCccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCc
Q 048418 657 LTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 657 ~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 724 (798)
++ ..+++|+.|++++| .++.+|. .+++|+.|++++|. +..+|..+.++++|+.|+|++|+
T Consensus 236 lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 236 LP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 23 45677888888877 5666665 56778888888775 34677777788888888888876
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=3.4e-21 Score=206.07 Aligned_cols=253 Identities=17% Similarity=0.130 Sum_probs=161.9
Q ss_pred hHHHhhccCceeEEEecCcccccCc-ccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccc
Q 048418 438 WEKICEMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMN 516 (798)
Q Consensus 438 ~~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~ 516 (798)
+...+..+++|+.|+|++|.++.++ ..++.+++|++|++++|.++..++ + .++++|++|++++|.+..+|. .+
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~~----~~ 99 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GP 99 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEEE----CT
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCccccccC----CC
Confidence 3344455556666666666665333 456666666666666666654444 3 666666666666665555542 35
Q ss_pred cCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEe
Q 048418 517 KLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLV 596 (798)
Q Consensus 517 ~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~ 596 (798)
+|++|++++|.+.. .+ ...+++|+.|++++|
T Consensus 100 ~L~~L~l~~n~l~~----------------------~~---~~~~~~L~~L~l~~N------------------------ 130 (317)
T 3o53_A 100 SIETLHAANNNISR----------------------VS---CSRGQGKKNIYLANN------------------------ 130 (317)
T ss_dssp TCCEEECCSSCCSE----------------------EE---ECCCSSCEEEECCSS------------------------
T ss_pred CcCEEECCCCccCC----------------------cC---ccccCCCCEEECCCC------------------------
Confidence 66666666655531 00 122344444444444
Q ss_pred cCCCCCCCceeee-ecCCCCCCeeEEEEEeccCCCCCcccc-ccCcccceEEEeeccccCCeeeeCCCCCccccEEEeec
Q 048418 597 NESKMPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPAL-EKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKS 674 (798)
Q Consensus 597 ~n~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~ 674 (798)
. ++.+.. .+.. +++|++|++++|.+....+..+ ..+++|+.|++++|.++.. .....+++|++|++++
T Consensus 131 --~----l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 131 --K----ITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSS 200 (317)
T ss_dssp --C----CCSGGGBCTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCS
T ss_pred --C----CCCccchhhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCC
Confidence 3 111110 2233 6888888888888776555655 4789999999998887652 2334589999999999
Q ss_pred CCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccc-cc
Q 048418 675 MLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYE-SQ 753 (798)
Q Consensus 675 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~-n~ 753 (798)
| .+..++..+..+++|+.|++++|. +..+|..+..+++|+.|++++|+.. ...+ ...+..+++|+.+++++ +.
T Consensus 201 N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~-~~~~---~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 201 N-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH-CGTL---RDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp S-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCB-HHHH---HHHHHTCHHHHHHHHHHHHH
T ss_pred C-cCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCcc-CcCH---HHHHhccccceEEECCCchh
Confidence 8 577777778889999999999986 4468888889999999999999733 1111 22344678888888884 45
Q ss_pred cccCCCCC
Q 048418 754 ITETEPPS 761 (798)
Q Consensus 754 l~~~~p~~ 761 (798)
+.+..|..
T Consensus 275 l~~~~~~~ 282 (317)
T 3o53_A 275 LTGQNEEE 282 (317)
T ss_dssp HHSSSSCC
T ss_pred ccCCchhc
Confidence 66555543
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=203.19 Aligned_cols=276 Identities=17% Similarity=0.131 Sum_probs=212.2
Q ss_pred hccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccc-hhhhcccccCcee
Q 048418 443 EMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHL 521 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L 521 (798)
..|+...+.+++++.++.+|..+. ++|++|++++|.++.+|...+.++++|++|++++|.+..+ |..+.++++|++|
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 345556678999999999998776 4999999999999998885459999999999999998888 4679999999999
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHH--hccCCCCCCEEEEecCC
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQ--SLCRLSCLESLKLVNES 599 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~--~l~~l~~L~~L~l~~n~ 599 (798)
++++|.+.. ..... ++.+++|+.|+++++. ...++. .+..+++|+.|++++|+
T Consensus 106 ~Ls~n~l~~---------------------~~~~~-~~~l~~L~~L~L~~n~---l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 106 DLSYNYLSN---------------------LSSSW-FKPLSSLTFLNLLGNP---YKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp ECCSSCCSS---------------------CCHHH-HTTCTTCSEEECTTCC---CSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred ECCCCcCCc---------------------CCHhH-hCCCccCCEEECCCCC---CcccCchhhhccCCCCcEEECCCCc
Confidence 999998862 22233 7788899999998873 334444 67889999999999853
Q ss_pred CCCCCceeee-ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCC
Q 048418 600 KMPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWL 678 (798)
Q Consensus 600 i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 678 (798)
.+..+.. .+.. +++|++|++++|.+.+..+..++.+++|+.|++++|.+... .......+++|+.|++++|. +
T Consensus 161 ---~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~-l 234 (353)
T 2z80_A 161 ---TFTKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECLELRDTD-L 234 (353)
T ss_dssp ---SCCEECTTTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH-HHHHHHHTTTEEEEEEESCB-C
T ss_pred ---cccccCHHHccC-CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc-hhhhhhhcccccEEECCCCc-c
Confidence 2333321 3445 89999999999998877788899999999999998887542 12223458999999999984 4
Q ss_pred Cccee----cCCcccccceeeEeeCCCCC----CCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCc-ccCCCceeEeec
Q 048418 679 EEWTM----GTGAMPKLEFLIINPCAYLK----KMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDK-EQSIPPLAHFME 749 (798)
Q Consensus 679 ~~l~~----~~~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~-i~~l~~L~~l~l 749 (798)
..++. .....+.++.++++++.... .+|..+..+++|+.|++++|.. ...+.. +..+++|+.+++
T Consensus 235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l------~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL------KSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC------CCCCTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC------CccCHHHHhcCCCCCEEEe
Confidence 44332 12346678888888876433 4677788999999999999962 233333 478999999999
Q ss_pred cccccccC
Q 048418 750 YESQITET 757 (798)
Q Consensus 750 ~~n~l~~~ 757 (798)
++|.+.+.
T Consensus 309 ~~N~~~~~ 316 (353)
T 2z80_A 309 HTNPWDCS 316 (353)
T ss_dssp CSSCBCCC
T ss_pred eCCCccCc
Confidence 99998765
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=4.6e-20 Score=207.46 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=63.8
Q ss_pred CCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCccccccee
Q 048418 615 PPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFL 694 (798)
Q Consensus 615 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L 694 (798)
+++|++|++++|.+.. .+.+..+++|+.|+|++|.+.+. .+..+.++++|+.|++++|......+..+..+++|+.|
T Consensus 195 l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp CTTCCEEECTTSCCSS--CCCCTTCTTCCEEECTTSCCSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcccc--cccccccccccEEECcCCcCccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 5666666666666543 23466666777777766665542 24445666677777777664322334455667777777
Q ss_pred eEeeCCCCCCCCccCCCCCCCCEEEEecCc
Q 048418 695 IINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 695 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 724 (798)
++++|......+..+..+++|+.|+|++||
T Consensus 272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 777775443233345667777777777665
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=7.8e-20 Score=204.86 Aligned_cols=239 Identities=16% Similarity=0.098 Sum_probs=110.3
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccch-hhhcccccCceeccCCcc
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA-DEFWKMNKLKHLNFGSIT 527 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 527 (798)
+.++.++..++.+|..+. .++++|+|++|.++.++...|.++++|++|+|++|.+..++ ..+.++++|++|++++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 344444444555554443 35555555555555444333355555555555555554442 344555555555555554
Q ss_pred cCCCCCC--CCCCCCCcceeecCCC--CcchhhhcCCCCCCCeEEEecccchhhhhHH-HhccCCCCCCEEEEecCCCCC
Q 048418 528 LPAHPGK--YCGSLENLNFISALHP--CCCTEDILGRLPNLRNLRIWGDLSYYQFLLS-QSLCRLSCLESLKLVNESKMP 602 (798)
Q Consensus 528 i~~~~~p--~i~~L~~L~~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~n~i~~ 602 (798)
+.. +| .+..+++|+.+++... ...+...+..+++|+.|+++++. ....++ ..+..
T Consensus 124 l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~---------------- 183 (440)
T 3zyj_A 124 LTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK--RLSYISEGAFEG---------------- 183 (440)
T ss_dssp CSS--CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTT----------------
T ss_pred CCe--eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC--CcceeCcchhhc----------------
Confidence 431 11 1222222222222110 11111115555666666665541 111111 12333
Q ss_pred CCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce
Q 048418 603 AFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT 682 (798)
Q Consensus 603 ~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 682 (798)
+++|++|++++|.++. .+.+..+++|+.|+|++|.+++. .+..+.++++|+.|++++|......+
T Consensus 184 ------------l~~L~~L~L~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 184 ------------LSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp ------------CSSCCEEECTTSCCSS--CCCCTTCSSCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred ------------ccccCeecCCCCcCcc--ccccCCCcccCEEECCCCccCcc-ChhhhccCccCCEEECCCCceeEECh
Confidence 4555555555555432 22355555666666665554431 23344555666666666553222223
Q ss_pred ecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCc
Q 048418 683 MGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 683 ~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 724 (798)
..+..+++|+.|++++|......+..+..+++|+.|+|++||
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 345556666666666665333223334556666666666654
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=1.8e-20 Score=199.33 Aligned_cols=227 Identities=24% Similarity=0.256 Sum_probs=159.0
Q ss_pred CceeEEEecCcccccCccc-ccCcCccceEEecCCCcccc---ChhhhhCCCCCcEeeccccccccchhhhcccccCcee
Q 048418 446 KLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSL---PPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHL 521 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~l---p~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 521 (798)
++|++|++++|.++.+|.. +.++++|++|++++|.++.+ |..+ ..+++|++|++++|.+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 5789999999998887765 68899999999999988755 5666 78899999999999888888888889999999
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCC
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKM 601 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~ 601 (798)
++++|.+.....+ .. +..+++|+.|+++++. .....+..+..+++|+.|++++|.
T Consensus 107 ~l~~n~l~~~~~~--------------------~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~-- 161 (306)
T 2z66_A 107 DFQHSNLKQMSEF--------------------SV-FLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNS-- 161 (306)
T ss_dssp ECTTSEEESSTTT--------------------TT-TTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCE--
T ss_pred ECCCCcccccccc--------------------hh-hhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCc--
Confidence 9999887631111 12 4555566666665552 233334445556666666666543
Q ss_pred CCCce--eeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCC
Q 048418 602 PAFSK--IVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLE 679 (798)
Q Consensus 602 ~~L~~--L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 679 (798)
+.. +...+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|....
T Consensus 162 --l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 162 --FQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp --EGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSCCCB
T ss_pred --cccccchhHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCCCcc
Confidence 221 1113344 677888888888776666677778888888888877776532 3345677888888888875555
Q ss_pred cceecCCccc-ccceeeEeeCCCC
Q 048418 680 EWTMGTGAMP-KLEFLIINPCAYL 702 (798)
Q Consensus 680 ~l~~~~~~l~-~L~~L~l~~c~~l 702 (798)
..+..+..+| +|+.|++++|+..
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCHHHHHhhhccCCEEEccCCCee
Confidence 5566667774 7888888888754
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=2.5e-20 Score=217.25 Aligned_cols=340 Identities=11% Similarity=0.014 Sum_probs=225.1
Q ss_pred CceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-c----CcccccCcCccceEEecCCCcc-----ccChhh
Q 048418 419 HLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-Q----YPSGIENLFLLRYLKLNIPSLK-----SLPPSL 488 (798)
Q Consensus 419 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~----lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i 488 (798)
+|+.|.+.++... ....+......+++|++|+|++|.+. . ++..+..+++|++|++++|.++ .++..+
T Consensus 139 ~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGF--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEE--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCc--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence 4888888776531 12334455678889999999998865 2 3444567888999999988875 344444
Q ss_pred hhCCCCCcEeeccccccccchhhhcccccCceeccCCcccCC--CCCC-CCCCCCCcceeecCC--CCcchhhhcCCCCC
Q 048418 489 LSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPA--HPGK-YCGSLENLNFISALH--PCCCTEDILGRLPN 563 (798)
Q Consensus 489 ~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~--~~~p-~i~~L~~L~~l~~~~--~~~~~~~~l~~l~~ 563 (798)
.++++|++|++++|.+..+|..+.++++|++|+++++.... ...+ .+..+++|+.+.+.. ....+.. +..+++
T Consensus 217 -~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~ 294 (592)
T 3ogk_B 217 -RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQ 294 (592)
T ss_dssp -HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGG
T ss_pred -hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCC
Confidence 78899999999999888888888899999999887532221 1122 555666777666653 2223333 666777
Q ss_pred CCeEEEecccchhhhhHHHhccCCCCCCEEEEecCC----C------CCCCceeeeec----------------------
Q 048418 564 LRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNES----K------MPAFSKIVLVE---------------------- 611 (798)
Q Consensus 564 L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~----i------~~~L~~L~l~~---------------------- 611 (798)
|++|++++|. .....++..+..+++|+.|+++++- + +++|+.|.+.-
T Consensus 295 L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 295 IRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp CCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 7888887774 2223344456677777777776310 0 56677666541
Q ss_pred -CCCCCCeeEEEEEeccCCCCCcccccc-CcccceEEEee----ccccCC----eeeeCCCCCccccEEEeecCCC-CC-
Q 048418 612 -YQFPPRLTHLSFSNTELMEDPMPALEK-MPLLQVLKLKQ----NSYSGR----KLTCGSDGFPNLKVLHLKSMLW-LE- 679 (798)
Q Consensus 612 -~~~l~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~----~~~~~~----~~~~~~~~~~~L~~L~L~~~~~-l~- 679 (798)
.. +++|++|+++.+.+++..+..++. +++|+.|++++ |.+++. .++....++++|+.|++++|.. +.
T Consensus 374 ~~~-~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 374 AQG-CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHH-CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred Hhh-CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 12 789999999888877666666665 89999999973 445442 1222245689999999987543 22
Q ss_pred c-ceecCCcccccceeeEeeCCCCC-CCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccC
Q 048418 680 E-WTMGTGAMPKLEFLIINPCAYLK-KMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITET 757 (798)
Q Consensus 680 ~-l~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~ 757 (798)
. +......+++|+.|++++|.... .++..+..+++|+.|+|++|+.. ...+. ..+.++++|+.|++++|++++.
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~---~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS-ERAIA---AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB-HHHHH---HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc-HHHHH---HHHHhcCccCeeECcCCcCCHH
Confidence 1 12222358999999999998543 34555678899999999999721 01111 1223688999999999998876
Q ss_pred CCCCCC-ccccc
Q 048418 758 EPPSLP-SQRKL 768 (798)
Q Consensus 758 ~p~~l~-~l~~L 768 (798)
....+. .++.+
T Consensus 529 ~~~~l~~~~p~l 540 (592)
T 3ogk_B 529 GQDLMQMARPYW 540 (592)
T ss_dssp CTTGGGGCCTTE
T ss_pred HHHHHHHhCCCc
Confidence 433332 34444
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=3.3e-20 Score=195.19 Aligned_cols=255 Identities=16% Similarity=0.054 Sum_probs=169.6
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccc-hhhhcccccCceeccCCcc
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHLNFGSIT 527 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~ 527 (798)
++++.+++.++.+|..+ .++|++|++++|.++.+|...|.++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 67888888888888655 46889999999988888765558889999999998888777 6778888899999888886
Q ss_pred -cCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCce
Q 048418 528 -LPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSK 606 (798)
Q Consensus 528 -i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~ 606 (798)
+.. ..+.. +..+++|+.|+++++. .....+..+
T Consensus 92 ~l~~---------------------~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~---------------------- 125 (285)
T 1ozn_A 92 QLRS---------------------VDPAT-FHGLGRLHTLHLDRCG--LQELGPGLF---------------------- 125 (285)
T ss_dssp TCCC---------------------CCTTT-TTTCTTCCEEECTTSC--CCCCCTTTT----------------------
T ss_pred Cccc---------------------cCHHH-hcCCcCCCEEECCCCc--CCEECHhHh----------------------
Confidence 531 11233 6666777777777662 111111112
Q ss_pred eeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCC
Q 048418 607 IVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTG 686 (798)
Q Consensus 607 L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 686 (798)
.. +++|++|++++|.+....+..++.+++|+.|++++|.++. ..+..+..+++|+.|++++|......+..+.
T Consensus 126 -----~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 126 -----RG-LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp -----TT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred -----hC-CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 22 5667777777777665555567778888888888776654 1223466788888888888754333466777
Q ss_pred cccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCCCc
Q 048418 687 AMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPS 764 (798)
Q Consensus 687 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~ 764 (798)
.+++|+.|++++|......|..+..+++|+.|++++|+.. .+.........++.+..+.+.+....|..+..
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~------c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV------CDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE------CSGGGHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc------CCCCcHHHHHHHHhcccccCccccCCchHhCC
Confidence 8888888888888755433345788888999999888621 00000001112333445566666666665544
No 64
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=1.4e-22 Score=228.62 Aligned_cols=349 Identities=13% Similarity=-0.023 Sum_probs=238.6
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-cCcccc-cCcC----ccceEEecCCCcc-----ccC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-QYPSGI-ENLF----LLRYLKLNIPSLK-----SLP 485 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-~lp~~i-~~L~----~Lr~L~L~~~~i~-----~lp 485 (798)
++++++|.+.++.........++..+..+++|++|+|++|.+. ..+..+ ..+. +|++|++++|.++ .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 6889999999887532111245567788999999999999987 233333 3354 6999999999988 456
Q ss_pred hhhhhCCCCCcEeeccccccccc-hhhh-----cccccCceeccCCcccCCCC---CC-CCCCCCCcceeecCCCCcc--
Q 048418 486 PSLLSNLPNLYTLDMPFSYIDHT-ADEF-----WKMNKLKHLNFGSITLPAHP---GK-YCGSLENLNFISALHPCCC-- 553 (798)
Q Consensus 486 ~~i~~~L~~L~~L~L~~~~l~~l-p~~i-----~~L~~L~~L~L~~~~i~~~~---~p-~i~~L~~L~~l~~~~~~~~-- 553 (798)
..+ .++++|++|++++|.+... +..+ ...++|++|++++|.+.... ++ .+..+++|+.+++......
T Consensus 107 ~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 676 9999999999999977543 2222 23568999999999887432 34 4557889999998853321
Q ss_pred -hhhhcC-----CCCCCCeEEEecccc--hhhhhHHHhccCCCCCCEEEEecCCCCC-CCceeee-ecCCCCCCeeEEEE
Q 048418 554 -TEDILG-----RLPNLRNLRIWGDLS--YYQFLLSQSLCRLSCLESLKLVNESKMP-AFSKIVL-VEYQFPPRLTHLSF 623 (798)
Q Consensus 554 -~~~~l~-----~l~~L~~L~l~~~~~--~~~~~l~~~l~~l~~L~~L~l~~n~i~~-~L~~L~l-~~~~~l~~L~~L~L 623 (798)
+.. +. .+++|+.|++++|.- .....++..+..+++|++|++++|.+-. .+..+.. .... +++|++|++
T Consensus 186 ~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~-~~~L~~L~L 263 (461)
T 1z7x_W 186 GVRV-LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP-SSRLRTLWI 263 (461)
T ss_dssp HHHH-HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTST-TCCCCEEEC
T ss_pred HHHH-HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcC-CCCceEEEC
Confidence 222 22 367999999999851 1223477888889999999999866300 1111111 1223 789999999
Q ss_pred EeccCCCC----CccccccCcccceEEEeeccccCCeee---e-CCCCCccccEEEeecCCCCCc----ceecCCccccc
Q 048418 624 SNTELMED----PMPALEKMPLLQVLKLKQNSYSGRKLT---C-GSDGFPNLKVLHLKSMLWLEE----WTMGTGAMPKL 691 (798)
Q Consensus 624 ~~~~l~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~---~-~~~~~~~L~~L~L~~~~~l~~----l~~~~~~l~~L 691 (798)
++|.++.. .+..+..+++|+.|++++|.+.+.... . .....++|++|++++|..... ++..+..+++|
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 99987654 355667799999999998877543211 1 112347999999999864332 45556678999
Q ss_pred ceeeEeeCCCCCCCCc----cCCC-CCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccC--------C
Q 048418 692 EFLIINPCAYLKKMPE----QLWC-IKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITET--------E 758 (798)
Q Consensus 692 ~~L~l~~c~~l~~lp~----~l~~-l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~--------~ 758 (798)
+.|++++|......+. .+.. .++|+.|++++|...- ..+......+..+++|+.+++++|.+++. +
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l 422 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD-SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 422 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH-HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHH
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh-hhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHh
Confidence 9999999975432222 2222 6799999999997331 11112233445789999999999998865 4
Q ss_pred CCCCCcccccc
Q 048418 759 PPSLPSQRKLK 769 (798)
Q Consensus 759 p~~l~~l~~L~ 769 (798)
|...+.++.|.
T Consensus 423 ~~~~~~L~~L~ 433 (461)
T 1z7x_W 423 RQPGCLLEQLV 433 (461)
T ss_dssp TSTTCCCCEEE
T ss_pred ccCCcchhhee
Confidence 44455555554
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=2.5e-20 Score=211.15 Aligned_cols=237 Identities=19% Similarity=0.135 Sum_probs=173.6
Q ss_pred ccCceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceec
Q 048418 444 MFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLN 522 (798)
Q Consensus 444 ~~~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 522 (798)
.+++|++|+|++|.++.+ |..++.+++|++|+|++|.++..++ + +.+++|++|+|++|.+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 344888888888888754 4678888888888888888876665 4 888888888888888877764 37888888
Q ss_pred cCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCC
Q 048418 523 FGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMP 602 (798)
Q Consensus 523 L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~ 602 (798)
+++|.+.. .+ ...+++|+.|++++|. .....|.
T Consensus 106 L~~N~l~~----------------------~~---~~~l~~L~~L~L~~N~--l~~~~~~-------------------- 138 (487)
T 3oja_A 106 AANNNISR----------------------VS---CSRGQGKKNIYLANNK--ITMLRDL-------------------- 138 (487)
T ss_dssp CCSSCCCC----------------------EE---ECCCSSCEEEECCSSC--CCSGGGB--------------------
T ss_pred CcCCcCCC----------------------CC---ccccCCCCEEECCCCC--CCCCCch--------------------
Confidence 88887752 00 2234556666666652 1111111
Q ss_pred CCceeeeecCCCCCCeeEEEEEeccCCCCCccccc-cCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcc
Q 048418 603 AFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALE-KMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEW 681 (798)
Q Consensus 603 ~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 681 (798)
.+.. +++|++|++++|.+++..+..+. .+++|+.|+|++|.+++. .....+++|+.|+|++| .+..+
T Consensus 139 -------~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~ 206 (487)
T 3oja_A 139 -------DEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSN-KLAFM 206 (487)
T ss_dssp -------CGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSS-CCCEE
T ss_pred -------hhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc---cccccCCCCCEEECCCC-CCCCC
Confidence 2233 78888999999988776677775 799999999999988763 23446899999999998 57778
Q ss_pred eecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeecc
Q 048418 682 TMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEY 750 (798)
Q Consensus 682 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~ 750 (798)
|..++.+++|+.|++++|... .+|..+..+++|+.|++++|+.. ...++ ..+..++.|..++++
T Consensus 207 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~-c~~~~---~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLR---DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC-HHHHH---HHHTTCHHHHHHHHH
T ss_pred CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc-CcchH---HHHHhCCCCcEEecc
Confidence 777889999999999998744 68888999999999999999733 11221 223467777777776
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.2e-19 Score=204.15 Aligned_cols=223 Identities=18% Similarity=0.115 Sum_probs=131.7
Q ss_pred CceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 523 (798)
++|++|+|++|.++.+ |..|.++++|++|+|++|.++.++...|.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 4677788888877743 56677788888888888877766654447788888888888877777544 667788888888
Q ss_pred CCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHH-HhccCCCCCCEEEEecCCCCC
Q 048418 524 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLS-QSLCRLSCLESLKLVNESKMP 602 (798)
Q Consensus 524 ~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~n~i~~ 602 (798)
++|.+.. +| ... +.++++|+.|+++++. ....++ ..+..+++|+.|++++|.
T Consensus 155 ~~N~l~~--~~-------------------~~~-~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n~--- 207 (452)
T 3zyi_A 155 RNNPIES--IP-------------------SYA-FNRVPSLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGMCN--- 207 (452)
T ss_dssp CSCCCCE--EC-------------------TTT-TTTCTTCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTTSC---
T ss_pred CCCCcce--eC-------------------HhH-HhcCCcccEEeCCCCC--CccccChhhccCCCCCCEEECCCCc---
Confidence 7777642 22 111 4444555555554431 222222 234455555555555544
Q ss_pred CCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce
Q 048418 603 AFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT 682 (798)
Q Consensus 603 ~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 682 (798)
++.+. .+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+... .+..+..+++|+.|+|++| .+..++
T Consensus 208 -l~~~~-~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 208 -IKDMP-NLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp -CSSCC-CCTT-CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred -ccccc-cccc-cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEEECCCC-cCCccC
Confidence 11111 1223 56666666666666555555666666666666666555432 2334555666666666665 344443
Q ss_pred -ecCCcccccceeeEeeCC
Q 048418 683 -MGTGAMPKLEFLIINPCA 700 (798)
Q Consensus 683 -~~~~~l~~L~~L~l~~c~ 700 (798)
..+..+++|+.|++++|+
T Consensus 283 ~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSSTTCTTCCEEECCSSC
T ss_pred hHHhccccCCCEEEccCCC
Confidence 234556666666666665
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1.2e-18 Score=201.71 Aligned_cols=270 Identities=18% Similarity=0.096 Sum_probs=205.2
Q ss_pred cCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccC
Q 048418 445 FKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFG 524 (798)
Q Consensus 445 ~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 524 (798)
...+++|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 3468999999999999998776 799999999999999987 46899999999999999987 78999999999
Q ss_pred CcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCC
Q 048418 525 SITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAF 604 (798)
Q Consensus 525 ~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L 604 (798)
+|.+.. +|. .+.+|+.+++.++. +..+-..+++|+.|++++|. ...+|. .+++|+.|++++|. +
T Consensus 110 ~N~l~~--l~~--~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~---l~~l~~---~~~~L~~L~L~~N~----l 173 (622)
T 3g06_A 110 SNPLTH--LPA--LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQ---LASLPA---LPSELCKLWAYNNQ----L 173 (622)
T ss_dssp SCCCCC--CCC--CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSC---CSCCCC---CCTTCCEEECCSSC----C
T ss_pred CCcCCC--CCC--CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCc---CCCcCC---ccCCCCEEECCCCC----C
Confidence 998864 553 45667777776421 11111235889999999983 223332 35689999999876 3
Q ss_pred ceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceec
Q 048418 605 SKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG 684 (798)
Q Consensus 605 ~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 684 (798)
+.+. .. +++|+.|++++|.+++ .+. .+++|+.|++++|.++. ++ ..+++|+.|++++| .++.+|
T Consensus 174 ~~l~---~~-~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N-~L~~lp-- 237 (622)
T 3g06_A 174 TSLP---ML-PSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS--LP---ALPSGLKELIVSGN-RLTSLP-- 237 (622)
T ss_dssp SCCC---CC-CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS--CC---CCCTTCCEEECCSS-CCSCCC--
T ss_pred CCCc---cc-CCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc--cC---CCCCCCCEEEccCC-ccCcCC--
Confidence 3332 22 7899999999998764 222 35789999999888775 23 24689999999998 567777
Q ss_pred CCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccccCCCCCCCc
Q 048418 685 TGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITETEPPSLPS 764 (798)
Q Consensus 685 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~ 764 (798)
..+++|+.|++++|. +..+|. .+++|+.|++++|.. ...+..+.++++|+.|++++|.+++..|..+..
T Consensus 238 -~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~L------~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 238 -VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQL------TRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp -CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCC------CSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred -CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCCC------CcCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 567899999999996 556877 678999999999962 234556788999999999999998877665544
Q ss_pred cc
Q 048418 765 QR 766 (798)
Q Consensus 765 l~ 766 (798)
++
T Consensus 307 L~ 308 (622)
T 3g06_A 307 IT 308 (622)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=202.86 Aligned_cols=219 Identities=18% Similarity=0.144 Sum_probs=160.8
Q ss_pred CceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L 523 (798)
+++++|+|++|.++.+ +..+.++++|++|+|++|.+..++...|.++++|++|+|++|.+..+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 5788889998888844 4678888899999999888888776655888899999998888888865 5788888999988
Q ss_pred CCcccCCCCCC--CCCCCCCcceeecCC---CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecC
Q 048418 524 GSITLPAHPGK--YCGSLENLNFISALH---PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNE 598 (798)
Q Consensus 524 ~~~~i~~~~~p--~i~~L~~L~~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n 598 (798)
++|.+.. +| .+.++++|+.+++.. ........+..+++|+.|++++|. ...+| .+..+++|+.|++++|
T Consensus 144 ~~N~i~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~---l~~~~-~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 144 RNNPIES--IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN---LREIP-NLTPLIKLDELDLSGN 217 (440)
T ss_dssp CSCCCCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC---CSSCC-CCTTCSSCCEEECTTS
T ss_pred CCCcccc--cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc---Ccccc-ccCCCcccCEEECCCC
Confidence 8888763 44 677888888888874 122333338889999999999983 23333 4667778888888876
Q ss_pred CCCCCCceeee-ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCC
Q 048418 599 SKMPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSML 676 (798)
Q Consensus 599 ~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 676 (798)
. ++.+.. .+.. +++|++|++++|.+....+..+..+++|+.|+|++|.++.. .+..+..+++|+.|+|++|+
T Consensus 218 ~----l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 218 H----LSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp C----CCEECTTTTTT-CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC-CTTTTSSCTTCCEEECCSSC
T ss_pred c----cCccChhhhcc-CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc-ChhHhccccCCCEEEcCCCC
Confidence 6 333321 3344 67788888888877766666777788888888887777652 23345667778888887775
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=4.2e-21 Score=205.36 Aligned_cols=243 Identities=16% Similarity=0.078 Sum_probs=184.6
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
+++|+.|.+.++... .+.+..|..+++|++|+|++|.++..+. +..+++|++|++++|.++.+| .+++|+
T Consensus 33 ~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 33 AWNVKELDLSGNPLS----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp GGGCSEEECTTSCCC----CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred CCCCCEEECcCCccC----cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 678999999988763 4556778999999999999999986654 999999999999999998776 348999
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchh
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY 576 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 576 (798)
+|++++|.+..++. ..+++|++|++++|.+.. ..+.. ++.+++|+.|++++|. .
T Consensus 103 ~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~---------------------~~~~~-~~~l~~L~~L~Ls~N~--l 156 (317)
T 3o53_A 103 TLHAANNNISRVSC--SRGQGKKNIYLANNKITM---------------------LRDLD-EGCRSRVQYLDLKLNE--I 156 (317)
T ss_dssp EEECCSSCCSEEEE--CCCSSCEEEECCSSCCCS---------------------GGGBC-TGGGSSEEEEECTTSC--C
T ss_pred EEECCCCccCCcCc--cccCCCCEEECCCCCCCC---------------------ccchh-hhccCCCCEEECCCCC--C
Confidence 99999999988864 347899999999998862 22223 6678889999999883 3
Q ss_pred hhhHHHhc-cCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCC
Q 048418 577 QFLLSQSL-CRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGR 655 (798)
Q Consensus 577 ~~~l~~~l-~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 655 (798)
....+..+ ..+++|+.|++++|. ++.+. .... +++|++|++++|.+.. .++.+..+++|+.|++++|.++.
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~----l~~~~-~~~~-l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~- 228 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNF----IYDVK-GQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL- 228 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSC----CCEEE-CCCC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-
T ss_pred CcccHHHHhhccCcCCEEECCCCc----Ccccc-cccc-cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-
Confidence 33333444 467889999998876 44442 1223 7888888888888764 34457788888888888887763
Q ss_pred eeeeCCCCCccccEEEeecCCCC-CcceecCCcccccceeeEeeCCCCCC
Q 048418 656 KLTCGSDGFPNLKVLHLKSMLWL-EEWTMGTGAMPKLEFLIINPCAYLKK 704 (798)
Q Consensus 656 ~~~~~~~~~~~L~~L~L~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~ 704 (798)
++..+..+++|+.|++++|+.. ..++..++.+++|+.|++++|..+..
T Consensus 229 -l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp -ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred -hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 4556677888888888887654 35566677788888888887765543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=3.7e-20 Score=209.69 Aligned_cols=238 Identities=13% Similarity=0.090 Sum_probs=180.1
Q ss_pred cCcccccC----cCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCcccCCCCCCC
Q 048418 460 QYPSGIEN----LFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKY 535 (798)
Q Consensus 460 ~lp~~i~~----L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~ 535 (798)
.+|..+.. +++|++|+|++|.++.+|+..|+++++|++|+|++|.+..++. +..+++|++|++++|.+..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~----- 94 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE----- 94 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-----
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-----
Confidence 34444444 3489999999999998776444999999999999998877765 8899999999999988752
Q ss_pred CCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCC
Q 048418 536 CGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFP 615 (798)
Q Consensus 536 i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l 615 (798)
+...++|+.|++++|. +..+... . +
T Consensus 95 ----------------------l~~~~~L~~L~L~~N~----------------l~~~~~~----------------~-l 119 (487)
T 3oja_A 95 ----------------------LLVGPSIETLHAANNN----------------ISRVSCS----------------R-G 119 (487)
T ss_dssp ----------------------EEECTTCCEEECCSSC----------------CCCEEEC----------------C-C
T ss_pred ----------------------CCCCCCcCEEECcCCc----------------CCCCCcc----------------c-c
Confidence 3344788889888872 1111111 1 6
Q ss_pred CCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCC-CCCccccEEEeecCCCCCcceecCCccccccee
Q 048418 616 PRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGS-DGFPNLKVLHLKSMLWLEEWTMGTGAMPKLEFL 694 (798)
Q Consensus 616 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L 694 (798)
++|++|++++|.+++..+..++.+++|+.|++++|.+++.. +..+ ..+++|+.|+|++|. +..++. ...+++|+.|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L 196 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTL 196 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-hHHHhhhCCcccEEecCCCc-cccccc-cccCCCCCEE
Confidence 78889999999888777778889999999999988887643 3333 368999999999984 665643 3468999999
Q ss_pred eEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccc-cCCCCCCCccccc
Q 048418 695 IINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQIT-ETEPPSLPSQRKL 768 (798)
Q Consensus 695 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~-~~~p~~l~~l~~L 768 (798)
++++|.. ..+|..+..+++|+.|++++|.. ...+..+..+++|+.+++++|.+. +.+|.++..++.|
T Consensus 197 ~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N~l------~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 197 DLSSNKL-AFMGPEFQSAAGVTWISLRNNKL------VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp ECCSSCC-CEECGGGGGGTTCSEEECTTSCC------CEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred ECCCCCC-CCCCHhHcCCCCccEEEecCCcC------cccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 9999874 45777788899999999999862 233445667889999999999988 6666677777766
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=8.6e-21 Score=202.43 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=65.5
Q ss_pred CCCeeEEEEEeccCCCC--Ccccc--ccCcccceEEEeeccccCCe-ee-eCCCCCccccEEEeecCCCCCcce-ecCCc
Q 048418 615 PPRLTHLSFSNTELMED--PMPAL--EKMPLLQVLKLKQNSYSGRK-LT-CGSDGFPNLKVLHLKSMLWLEEWT-MGTGA 687 (798)
Q Consensus 615 l~~L~~L~L~~~~l~~~--~~~~l--~~l~~L~~L~L~~~~~~~~~-~~-~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~ 687 (798)
+++|++|++++|.+.+. .+..+ +.+++|+.|++++|.++... .+ ..+..+++|++|++++|......| .....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 45555555555554322 11222 45555666666555554210 01 112244566666666653222222 22334
Q ss_pred ccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeecccccccc
Q 048418 688 MPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQITE 756 (798)
Q Consensus 688 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~~ 756 (798)
+++|+.|++++|... .+|..+. ++|+.|++++|... ..+.+..+++|+.+++++|.+++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~-------~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-------RNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC-------SCCCTTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC-------CChhHhhCCCCCEEeccCCCCCC
Confidence 566666666666533 5555544 56666666666421 12335566666666666666654
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.2e-19 Score=190.82 Aligned_cols=248 Identities=17% Similarity=0.116 Sum_probs=161.0
Q ss_pred cCceeEEEecCcccccCc-ccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccc-cccc-hhhhcccccCcee
Q 048418 445 FKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSY-IDHT-ADEFWKMNKLKHL 521 (798)
Q Consensus 445 ~~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~l-p~~i~~L~~L~~L 521 (798)
.+.|+.|++++|.++.+| ..+..+++|++|++++|.++.+++..|.++++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 468999999999988665 568899999999999999987744434899999999999995 8888 6778899999999
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCC
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKM 601 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~ 601 (798)
++++|.+.. ..+.. +..+++|+.|+++++. .....+..+..+++|+.|++++|.
T Consensus 111 ~l~~n~l~~---------------------~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~-- 164 (285)
T 1ozn_A 111 HLDRCGLQE---------------------LGPGL-FRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNR-- 164 (285)
T ss_dssp ECTTSCCCC---------------------CCTTT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC--
T ss_pred ECCCCcCCE---------------------ECHhH-hhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCc--
Confidence 999988762 11223 5566666777766662 222222335566677777776655
Q ss_pred CCCceeee-ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCc
Q 048418 602 PAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEE 680 (798)
Q Consensus 602 ~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 680 (798)
++.+.. ++.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|+....
T Consensus 165 --l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 165 --ISSVPERAFRG-LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp --CCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEECS
T ss_pred --ccccCHHHhcC-ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC-CHHHcccCcccCEEeccCCCccCC
Confidence 333322 2344 67778888888777666667777788888888887777652 233356677888888887753322
Q ss_pred ceecCCcccccceeeEeeCCCCCCCCccCCC--CCCCCEEEEecC
Q 048418 681 WTMGTGAMPKLEFLIINPCAYLKKMPEQLWC--IKSLNKFDCWWP 723 (798)
Q Consensus 681 l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~--l~~L~~L~l~~c 723 (798)
.+. ...+..|+.+....+......|..+.. +..++..++.+|
T Consensus 241 ~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 241 CRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp GGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 111 011233445555555444445554432 333444444444
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1e-18 Score=203.61 Aligned_cols=325 Identities=12% Similarity=-0.010 Sum_probs=214.3
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccc-----cCcccccCcCccceEEecCCCccccChhhhhC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLKSLPPSLLSN 491 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~ 491 (798)
+++|+.|.+.++........++..++..+++|+.|+++++.++ .++..+.++++|++|++++|.+..+|..+ .+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~-~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF-KA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH-HH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH-hh
Confidence 6888888887765322223446667788888999999888764 44555677888999999988888888766 88
Q ss_pred CCCCcEeecccc-cc---ccchhhhcccccCceeccCCcccCCCCCC-CCCCCCCcceeecCCCCc---chhhhcCCCCC
Q 048418 492 LPNLYTLDMPFS-YI---DHTADEFWKMNKLKHLNFGSITLPAHPGK-YCGSLENLNFISALHPCC---CTEDILGRLPN 563 (798)
Q Consensus 492 L~~L~~L~L~~~-~l---~~lp~~i~~L~~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~~~~~---~~~~~l~~l~~ 563 (798)
+++|+.|+++++ .. ...+..+..+++|+.|+++++. ...+| .+..+++|+.+++..... .+...+..+++
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 888888888754 21 2334556677778877776642 23355 555677777777764321 22222577888
Q ss_pred CCeEEEecccchhhhhHHHhccCCCCCCEEEEec-----------CCC-----------CCCCceeee-----------e
Q 048418 564 LRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVN-----------ESK-----------MPAFSKIVL-----------V 610 (798)
Q Consensus 564 L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~-----------n~i-----------~~~L~~L~l-----------~ 610 (798)
|+.|+++++ .....++.....+++|++|++++ +.+ +++|+.|.+ .
T Consensus 320 L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 320 LEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp CCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred CCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 888888744 34444555556677888888882 332 677777776 1
Q ss_pred cCCCCCCeeEEEEEec----cCCCC-----CccccccCcccceEEEeecc--ccCCeeeeCCCCCccccEEEeecCCCCC
Q 048418 611 EYQFPPRLTHLSFSNT----ELMED-----PMPALEKMPLLQVLKLKQNS--YSGRKLTCGSDGFPNLKVLHLKSMLWLE 679 (798)
Q Consensus 611 ~~~~l~~L~~L~L~~~----~l~~~-----~~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 679 (798)
+...+++|++|+++++ .+++. ....+..+++|+.|++++|. +++..+......+++|+.|++++|....
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 1212789999999843 44432 11225679999999997543 4443332223458999999999985322
Q ss_pred -cceecCCcccccceeeEeeCCCCC-CCCccCCCCCCCCEEEEecCcHHHHHHHhcCCC-cccCCCceeEeeccc
Q 048418 680 -EWTMGTGAMPKLEFLIINPCAYLK-KMPEQLWCIKSLNKFDCWWPQPELRQKLREFED-KEQSIPPLAHFMEYE 751 (798)
Q Consensus 680 -~l~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~-~i~~l~~L~~l~l~~ 751 (798)
.++.....+++|++|+|++|+... .++.....+++|+.|+|++|+.. ..... ....+|.+....+..
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it-----~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS-----MTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC-----TTCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC-----HHHHHHHHHhCCCcEEEEecC
Confidence 345556788999999999999432 24444567899999999999722 11111 223567766655544
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=1.4e-19 Score=195.18 Aligned_cols=256 Identities=19% Similarity=0.185 Sum_probs=149.8
Q ss_pred ceeEEEecCcccccCcccccCc--CccceEEecCCCccccChhhhhCCCCCcEeecccccccc--chhhhcccccCceec
Q 048418 447 LLRVLDLGSLVLIQYPSGIENL--FLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDH--TADEFWKMNKLKHLN 522 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~lp~~i~~L--~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~ 522 (798)
.++.|+++++.+. |..+..+ .++++|++++|.+...+..+ .++++|++|++++|.+.. +|..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 3566777766654 3445555 66777777777666555555 567777777777775543 566677777777777
Q ss_pred cCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCC
Q 048418 523 FGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMP 602 (798)
Q Consensus 523 L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~ 602 (798)
+++|.+. ...+.. ++.+++|+.|++++|.......++..+..+++|++|++++
T Consensus 125 L~~~~l~---------------------~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~----- 177 (336)
T 2ast_B 125 LEGLRLS---------------------DPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW----- 177 (336)
T ss_dssp CTTCBCC---------------------HHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC-----
T ss_pred CcCcccC---------------------HHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC-----
Confidence 7776654 233444 6667777777777663122223454455544444444444
Q ss_pred CCceeeeecCCCCCCeeEEEEEec-cCCCC-CccccccCc-ccceEEEeec--cccCCeeeeCCCCCccccEEEeecCCC
Q 048418 603 AFSKIVLVEYQFPPRLTHLSFSNT-ELMED-PMPALEKMP-LLQVLKLKQN--SYSGRKLTCGSDGFPNLKVLHLKSMLW 677 (798)
Q Consensus 603 ~L~~L~l~~~~~l~~L~~L~L~~~-~l~~~-~~~~l~~l~-~L~~L~L~~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~ 677 (798)
| .+++. .+..+..+| +|+.|++++| .+++..++..+..+++|+.|++++|..
T Consensus 178 -----------------------~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 178 -----------------------CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp -----------------------CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred -----------------------CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 3 33221 233345556 6666666655 233222333344567777777777753
Q ss_pred CC-cceecCCcccccceeeEeeCCCCC-CCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCC-CceeEeecccccc
Q 048418 678 LE-EWTMGTGAMPKLEFLIINPCAYLK-KMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSI-PPLAHFMEYESQI 754 (798)
Q Consensus 678 l~-~l~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l-~~L~~l~l~~n~l 754 (798)
++ ..+..+..+++|+.|++++|.... .....+.++++|+.|++++|- . ...+..+ .++..|++++|.+
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i-------~--~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV-------P--DGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSS-------C--TTCHHHHHHHSTTSEESCCCS
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCcc-------C--HHHHHHHHhhCcceEEecccC
Confidence 43 344456677778888887776322 111145677888888888771 1 1111122 1244456899999
Q ss_pred ccCCCCCCCc
Q 048418 755 TETEPPSLPS 764 (798)
Q Consensus 755 ~~~~p~~l~~ 764 (798)
++..|+.+.+
T Consensus 306 ~~~~~~~~~~ 315 (336)
T 2ast_B 306 TTIARPTIGN 315 (336)
T ss_dssp CCTTCSSCSS
T ss_pred ccccCCcccc
Confidence 9999988776
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=4.9e-19 Score=188.78 Aligned_cols=220 Identities=20% Similarity=0.168 Sum_probs=115.4
Q ss_pred eeEEEecCcccc--cCccccc-------CcCccceEEecCCCcc-ccChhhh-hCCCCCcEeeccccccccchhhhccc-
Q 048418 448 LRVLDLGSLVLI--QYPSGIE-------NLFLLRYLKLNIPSLK-SLPPSLL-SNLPNLYTLDMPFSYIDHTADEFWKM- 515 (798)
Q Consensus 448 Lr~L~L~~~~i~--~lp~~i~-------~L~~Lr~L~L~~~~i~-~lp~~i~-~~L~~L~~L~L~~~~l~~lp~~i~~L- 515 (798)
|+.|+|++|.+. .+|..+. ++++|++|++++|.++ .+|..+| +.+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 555555555553 3444443 4556666666665555 4444432 45556666666666555555555554
Q ss_pred ----ccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhh--HHHhc--cCC
Q 048418 516 ----NKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFL--LSQSL--CRL 587 (798)
Q Consensus 516 ----~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--l~~~l--~~l 587 (798)
++|++|++++|.+. ...+.. ++.+++|+.|++++|. ..+. ++..+ ..
T Consensus 145 ~~~~~~L~~L~L~~N~l~---------------------~~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~- 199 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSL---------------------NFSCEQ-VRVFPALSTLDLSDNP--ELGERGLISALCPLK- 199 (312)
T ss_dssp TTCCTTCCEEEEESCSCC---------------------CCCTTT-CCCCSSCCEEECCSCT--TCHHHHHHHHSCTTS-
T ss_pred HhhcCCCcEEEeeCCCCc---------------------cchHHH-hccCCCCCEEECCCCC--cCcchHHHHHHHhcc-
Confidence 55666666555553 112223 5556666666666652 2221 23232 33
Q ss_pred CCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCC--CCc-cccccCcccceEEEeeccccCCeeeeCCCCC
Q 048418 588 SCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELME--DPM-PALEKMPLLQVLKLKQNSYSGRKLTCGSDGF 664 (798)
Q Consensus 588 ~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~--~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 664 (798)
+++|++|++++|.+.. ..+ ..+..+++|+.|++++|.+.+......+..+
T Consensus 200 ---------------------------l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 200 ---------------------------FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp ---------------------------CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred ---------------------------CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 4445555555554431 011 1223456666666666665553212233445
Q ss_pred ccccEEEeecCCCCCcceecCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecCc
Q 048418 665 PNLKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 665 ~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 724 (798)
++|++|++++| .++.+|..+. ++|+.|++++|.. ..+|. +..+++|+.|++++|+
T Consensus 253 ~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l-~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 SQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSCC-CSCCC-TTTSCEEEEEECTTCT
T ss_pred CCCCEEECCCC-ccChhhhhcc--CCceEEECCCCCC-CCChh-HhhCCCCCEEeccCCC
Confidence 66666666665 3445555444 6677777776653 33455 6667777777777765
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=2.6e-20 Score=217.16 Aligned_cols=259 Identities=13% Similarity=0.120 Sum_probs=130.7
Q ss_pred hCCCCCcEeecccc-ccccchhhhcccccCceeccCCcccC--C---CCCC-CCCCCCCccee-ecCC-CCcchhhhcCC
Q 048418 490 SNLPNLYTLDMPFS-YIDHTADEFWKMNKLKHLNFGSITLP--A---HPGK-YCGSLENLNFI-SALH-PCCCTEDILGR 560 (798)
Q Consensus 490 ~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~L~~~~i~--~---~~~p-~i~~L~~L~~l-~~~~-~~~~~~~~l~~ 560 (798)
.++++|++|++++| .+..+|..+.++++|++|+++.+... . ..++ .+.++++|+.+ .+.. ....+...+..
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 33455555555555 44444444555555555544333210 0 0011 23344455544 2221 11112221346
Q ss_pred CCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCC----C------CCCCceeeeec-------------------
Q 048418 561 LPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNES----K------MPAFSKIVLVE------------------- 611 (798)
Q Consensus 561 l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~----i------~~~L~~L~l~~------------------- 611 (798)
+++|++|++++|. .....+...+..+++|+.|+++++- + +++|+.|.++-
T Consensus 288 ~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 7888888888874 2233345556778888888888741 0 55666664411
Q ss_pred --CCCCCCeeEEEEEeccCCCCCccccc-cCcccceEEEe--e----ccccCC----eeeeCCCCCccccEEEeecCCCC
Q 048418 612 --YQFPPRLTHLSFSNTELMEDPMPALE-KMPLLQVLKLK--Q----NSYSGR----KLTCGSDGFPNLKVLHLKSMLWL 678 (798)
Q Consensus 612 --~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~--~----~~~~~~----~~~~~~~~~~~L~~L~L~~~~~l 678 (798)
.. +++|++|.+..+.+++..+..+. .+|+|+.|+++ + +.++.. .+...+..+++|+.|++++ .+
T Consensus 367 l~~~-~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l 443 (594)
T 2p1m_B 367 VSMG-CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LL 443 (594)
T ss_dssp HHHH-CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SC
T ss_pred HHHh-chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cc
Confidence 12 56677776666655544444443 46777777776 2 223211 1111133466777777755 22
Q ss_pred Cc-ceecCC-cccccceeeEeeCCCCCCCCccC-CCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccccc
Q 048418 679 EE-WTMGTG-AMPKLEFLIINPCAYLKKMPEQL-WCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQIT 755 (798)
Q Consensus 679 ~~-l~~~~~-~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~l~ 755 (798)
.. ....++ .+++|+.|++++|......+..+ ..+++|+.|+|++|+.. ...+.. .+..+++|+.|++++|.++
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~-~~~~~~---~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG-DKALLA---NASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC-HHHHHH---TGGGGGGSSEEEEESSCCB
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc-HHHHHH---HHHhCCCCCEEeeeCCCCC
Confidence 21 111222 36777777777776432212122 44677777777777631 111111 1234677777777777664
Q ss_pred c
Q 048418 756 E 756 (798)
Q Consensus 756 ~ 756 (798)
.
T Consensus 520 ~ 520 (594)
T 2p1m_B 520 F 520 (594)
T ss_dssp H
T ss_pred H
Confidence 3
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=4e-19 Score=207.09 Aligned_cols=251 Identities=15% Similarity=0.086 Sum_probs=116.7
Q ss_pred cCccceEEecCC-CccccChhhhhCCCCCcEeecccc-------ccccchhhhcccccCcee-ccCCcccCCCCCC-CCC
Q 048418 468 LFLLRYLKLNIP-SLKSLPPSLLSNLPNLYTLDMPFS-------YIDHTADEFWKMNKLKHL-NFGSITLPAHPGK-YCG 537 (798)
Q Consensus 468 L~~Lr~L~L~~~-~i~~lp~~i~~~L~~L~~L~L~~~-------~l~~lp~~i~~L~~L~~L-~L~~~~i~~~~~p-~i~ 537 (798)
+++|++|++++| .+..+|..+ .++++|+.|+++.+ .+..++..+.++++|+.| .+.+.. ...+| .+.
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~--~~~l~~~~~ 286 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV--PAYLPAVYS 286 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHH-HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC--GGGGGGGHH
T ss_pred CCCCcEEecCCCCcHHHHHHHH-hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc--hhhHHHHHH
Confidence 455555555554 233444444 56666666664433 234455556666666666 222211 11233 222
Q ss_pred CCCCcceeecCCCCc---chhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEec---------CCC-----
Q 048418 538 SLENLNFISALHPCC---CTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVN---------ESK----- 600 (798)
Q Consensus 538 ~L~~L~~l~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~---------n~i----- 600 (798)
.+++|+.+++..... .+...+..+++|+.|+++++ .....++.....+++|+.|++.. +.+
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 455566665553221 12222446666666666665 22333333334456666666621 111
Q ss_pred ------CCCCceeeee-----------cCCCCCCeeEEEEE--e---c-cCCCCCc-----cccccCcccceEEEeeccc
Q 048418 601 ------MPAFSKIVLV-----------EYQFPPRLTHLSFS--N---T-ELMEDPM-----PALEKMPLLQVLKLKQNSY 652 (798)
Q Consensus 601 ------~~~L~~L~l~-----------~~~~l~~L~~L~L~--~---~-~l~~~~~-----~~l~~l~~L~~L~L~~~~~ 652 (798)
+++|+.|.+. +...+++|++|+++ + | .++.... ..+..+++|+.|++++ .+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 4556666431 11115666666666 2 2 2221111 1134556666666653 33
Q ss_pred cCCeeeeCCCCCccccEEEeecCCCCCcc-eecCCcccccceeeEeeCCCCCC-CCccCCCCCCCCEEEEecCc
Q 048418 653 SGRKLTCGSDGFPNLKVLHLKSMLWLEEW-TMGTGAMPKLEFLIINPCAYLKK-MPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 653 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~ 724 (798)
++..+......+++|+.|+|++|...... ......+++|++|++++|+.... ++..+..+++|+.|++++|+
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 32221111112566666666665422211 11113466666666666664211 11123345666666666665
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=1.6e-17 Score=173.65 Aligned_cols=216 Identities=16% Similarity=0.143 Sum_probs=107.8
Q ss_pred EecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCceeccCCcccCC
Q 048418 452 DLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNFGSITLPA 530 (798)
Q Consensus 452 ~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~ 530 (798)
+..+..+..+|..+. ++|++|++++|.++.++...|.++++|++|++++|.+..++. .+.++++|++|++++|.+..
T Consensus 13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 13 QCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 344444555555443 356666666666665555333666666666666666655543 45566666666666665531
Q ss_pred CCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeee
Q 048418 531 HPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLV 610 (798)
Q Consensus 531 ~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~ 610 (798)
..+.. +..+++|+.|+++++. .....+..+..
T Consensus 91 ---------------------~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~------------------------ 122 (276)
T 2z62_A 91 ---------------------LALGA-FSGLSSLQKLVAVETN--LASLENFPIGH------------------------ 122 (276)
T ss_dssp ---------------------ECTTT-TTTCTTCCEEECTTSC--CCCSTTCCCTT------------------------
T ss_pred ---------------------cChhh-hcCCccccEEECCCCC--ccccCchhccc------------------------
Confidence 11122 4444555555554441 10000001112
Q ss_pred cCCCCCCeeEEEEEeccCCCC-CccccccCcccceEEEeeccccCCeeeeCCCCCcccc----EEEeecCCCCCcceecC
Q 048418 611 EYQFPPRLTHLSFSNTELMED-PMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLK----VLHLKSMLWLEEWTMGT 685 (798)
Q Consensus 611 ~~~~l~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~l~~l~~~~ 685 (798)
+++|++|++++|.+... .+..++.+++|+.|++++|.+++. .+..+..+++|+ .|++++| .+..++...
T Consensus 123 ----l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~ 196 (276)
T 2z62_A 123 ----LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGA 196 (276)
T ss_dssp ----CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCEEEECCSS-CCCEECTTS
T ss_pred ----CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhhhhccccceeeecCCC-cccccCccc
Confidence 44445555555544332 244555555555555555554431 112223333333 5666665 344444444
Q ss_pred CcccccceeeEeeCCCCCCCCc-cCCCCCCCCEEEEecCc
Q 048418 686 GAMPKLEFLIINPCAYLKKMPE-QLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 686 ~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 724 (798)
....+|+.|++++|... .+|. .+..+++|+.|++++|+
T Consensus 197 ~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 197 FKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSC
T ss_pred cCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCc
Confidence 44446777777766633 3443 34666777777777664
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=4.4e-17 Score=169.81 Aligned_cols=200 Identities=23% Similarity=0.228 Sum_probs=126.5
Q ss_pred CceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhh-cccccCceeccC
Q 048418 446 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEF-WKMNKLKHLNFG 524 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~L~ 524 (798)
...+.++++++.++.+|..+. .+|++|++++|.++.+|...|.++++|++|++++|.+..+|..+ ..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 356788888888888887665 57888888888888887754488888888888888888887654 678888888888
Q ss_pred CcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCC
Q 048418 525 SITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAF 604 (798)
Q Consensus 525 ~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L 604 (798)
+|.+.. +| +.. +..+++|+.|+++++. .....+..+..
T Consensus 94 ~n~l~~--~~-------------------~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~------------------ 131 (270)
T 2o6q_A 94 DNKLQA--LP-------------------IGV-FDQLVNLAELRLDRNQ--LKSLPPRVFDS------------------ 131 (270)
T ss_dssp SSCCCC--CC-------------------TTT-TTTCSSCCEEECCSSC--CCCCCTTTTTT------------------
T ss_pred CCcCCc--CC-------------------HhH-cccccCCCEEECCCCc--cCeeCHHHhCc------------------
Confidence 887752 11 122 5566667777766652 11111112222
Q ss_pred ceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCccee-
Q 048418 605 SKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTM- 683 (798)
Q Consensus 605 ~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~- 683 (798)
+++|++|++++|.+....+..++.+++|+.|++++|.+... .+..+..+++|++|++++| .+..++.
T Consensus 132 ----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 199 (270)
T 2o6q_A 132 ----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNN-QLKRVPEG 199 (270)
T ss_dssp ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred ----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccCCCcCEEECCCC-cCCcCCHH
Confidence 45555555555555444444456666666666666655542 1223455666666666665 3444433
Q ss_pred cCCcccccceeeEeeCCC
Q 048418 684 GTGAMPKLEFLIINPCAY 701 (798)
Q Consensus 684 ~~~~l~~L~~L~l~~c~~ 701 (798)
.+..+++|+.|++++|+.
T Consensus 200 ~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTCTTCCEEECCSSCB
T ss_pred HhccccCCCEEEecCCCe
Confidence 345666677777766664
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=3.1e-17 Score=174.33 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=64.7
Q ss_pred hccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceec
Q 048418 443 EMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLN 522 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 522 (798)
..+++|+.|+++++.++.+| .+..+++|++|++++|.+..++. + .++++|++|++++|.+..+| .+..+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 45677888888888877766 57778888888888888887777 5 78888888888888777776 477788888888
Q ss_pred cCCcccC
Q 048418 523 FGSITLP 529 (798)
Q Consensus 523 L~~~~i~ 529 (798)
+++|.+.
T Consensus 114 l~~n~l~ 120 (308)
T 1h6u_A 114 LTSTQIT 120 (308)
T ss_dssp CTTSCCC
T ss_pred CCCCCCC
Confidence 8887765
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=4e-18 Score=183.66 Aligned_cols=255 Identities=15% Similarity=0.137 Sum_probs=178.3
Q ss_pred CceEEEEecCCCCCCCchhhHHHhhcc--CceeEEEecCcccccCcccccCcCccceEEecCCCccc--cChhhhhCCCC
Q 048418 419 HLHSLLYFTSESRHIDPIDWEKICEMF--KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKS--LPPSLLSNLPN 494 (798)
Q Consensus 419 ~LrsL~~~~~~~~~~~~~~~~~~~~~~--~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~--lp~~i~~~L~~ 494 (798)
.++++.+.++.. .+..+..+ +.+++|+++++.+...+..+..+++|++|++++|.+.. +|..+ .++++
T Consensus 48 ~~~~l~l~~~~~-------~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNL-------HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSK 119 (336)
T ss_dssp TSSEEECTTCBC-------CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCC
T ss_pred hheeeccccccC-------CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCC
Confidence 466777665433 24556666 89999999999998666678889999999999999873 77776 99999
Q ss_pred CcEeeccccccc-cchhhhcccccCceeccCCc-ccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecc
Q 048418 495 LYTLDMPFSYID-HTADEFWKMNKLKHLNFGSI-TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 572 (798)
Q Consensus 495 L~~L~L~~~~l~-~lp~~i~~L~~L~~L~L~~~-~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 572 (798)
|++|++++|.+. ..|..+..+++|++|++++| .++. ...+.. +..+++|+.|++++|
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~--------------------~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--------------------FALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH--------------------HHHHHH-HHHCTTCCEEECCCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH--------------------HHHHHH-HhcCCCCCEEcCCCC
Confidence 999999999776 56888999999999999998 4541 112233 677888888888887
Q ss_pred cchhhhhHHHhccCCC-CCCEEEEecCCCCCCCc--eeeeecCCCCCCeeEEEEEecc-CCCCCccccccCcccceEEEe
Q 048418 573 LSYYQFLLSQSLCRLS-CLESLKLVNESKMPAFS--KIVLVEYQFPPRLTHLSFSNTE-LMEDPMPALEKMPLLQVLKLK 648 (798)
Q Consensus 573 ~~~~~~~l~~~l~~l~-~L~~L~l~~n~i~~~L~--~L~l~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~ 648 (798)
.......++..+..++ +|++|++++|.+ .+. .+...+.. +++|++|++++|. +++..+..++.+++|+.|+++
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~--~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRK--NLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGG--GSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcc--cCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 3223334666677788 888888887420 121 11112334 7888888888887 666667788888999999998
Q ss_pred ecc-ccCCeeeeCCCCCccccEEEeecCCCCCcceecCCcc-cccceeeEeeCCCCCCCCccCC
Q 048418 649 QNS-YSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAM-PKLEFLIINPCAYLKKMPEQLW 710 (798)
Q Consensus 649 ~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l-~~L~~L~l~~c~~l~~lp~~l~ 710 (798)
+|. +.... ...+..+++|+.|++++| +..- .+..+ .+|..|++++|......|..+.
T Consensus 256 ~~~~~~~~~-~~~l~~~~~L~~L~l~~~--i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 256 RCYDIIPET-LLELGEIPTLKTLQVFGI--VPDG--TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TCTTCCGGG-GGGGGGCTTCCEEECTTS--SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCHHH-HHHHhcCCCCCEEeccCc--cCHH--HHHHHHhhCcceEEecccCccccCCccc
Confidence 774 22221 223566888999999887 2211 12233 3467777877776666665544
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=1.9e-17 Score=172.79 Aligned_cols=209 Identities=21% Similarity=0.199 Sum_probs=119.0
Q ss_pred hccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCcee
Q 048418 443 EMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHL 521 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L 521 (798)
..+++|+.|+++++.++.++ .++.+++|++|++++|.+..++ .+ +++++|++|++++|.+..+|.. +.++++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 44566666666666665544 3566666666666666666553 34 6666666666666666665433 4566666666
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCC
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKM 601 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~ 601 (798)
++++|.+.. ..+.. ++.+++|+.|++++|. .....+..
T Consensus 115 ~L~~n~l~~---------------------~~~~~-~~~l~~L~~L~L~~n~--l~~~~~~~------------------ 152 (272)
T 3rfs_A 115 VLVENQLQS---------------------LPDGV-FDKLTNLTYLNLAHNQ--LQSLPKGV------------------ 152 (272)
T ss_dssp ECTTSCCCC---------------------CCTTT-TTTCTTCCEEECCSSC--CCCCCTTT------------------
T ss_pred ECCCCcCCc---------------------cCHHH-hccCCCCCEEECCCCc--cCccCHHH------------------
Confidence 666666541 11112 4455555555555541 11111111
Q ss_pred CCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcc
Q 048418 602 PAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEW 681 (798)
Q Consensus 602 ~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 681 (798)
+.. +++|++|++++|.+++..+..++.+++|+.|++++|.+.+. .+..+..+++|+.|++++|+.
T Consensus 153 ---------~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~---- 217 (272)
T 3rfs_A 153 ---------FDK-LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPW---- 217 (272)
T ss_dssp ---------TTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCB----
T ss_pred ---------hcc-CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCc----
Confidence 122 56666666666666554444566667777777776666542 233345667777777776642
Q ss_pred eecCCcccccceeeEeeCCCCCCCCccCCCCCC
Q 048418 682 TMGTGAMPKLEFLIINPCAYLKKMPEQLWCIKS 714 (798)
Q Consensus 682 ~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 714 (798)
.+.+|+|+.|+++.|...+.+|..++.++.
T Consensus 218 ---~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 ---DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ---CCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ---cccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 244666777777777666666666655543
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=7.6e-18 Score=175.80 Aligned_cols=214 Identities=18% Similarity=0.168 Sum_probs=156.6
Q ss_pred cCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccC
Q 048418 445 FKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFG 524 (798)
Q Consensus 445 ~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 524 (798)
+..+..+++..+.+... .....+.+|+.|+++++.+..++. + ..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 18 ~~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-l-~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-I-QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCTT-G-GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred HHHHHHHHhcCcccccc-cccccccceeeeeeCCCCcccccc-c-ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence 44455566666665533 245678899999999998887764 5 88999999999999888875 68889999999999
Q ss_pred CcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCC
Q 048418 525 SITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAF 604 (798)
Q Consensus 525 ~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L 604 (798)
+|.+.. ..+.. ++.+++|+.|++++|. .. .+ ++.
T Consensus 94 ~n~l~~---------------------~~~~~-~~~l~~L~~L~L~~n~--l~-~~--------------------~~~- 127 (272)
T 3rfs_A 94 GNQLQS---------------------LPNGV-FDKLTNLKELVLVENQ--LQ-SL--------------------PDG- 127 (272)
T ss_dssp TSCCCC---------------------CCTTT-TTTCTTCCEEECTTSC--CC-CC--------------------CTT-
T ss_pred CCccCc---------------------cChhH-hcCCcCCCEEECCCCc--CC-cc--------------------CHH-
Confidence 887752 11222 5667777777777762 11 11 110
Q ss_pred ceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce-e
Q 048418 605 SKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT-M 683 (798)
Q Consensus 605 ~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~ 683 (798)
.+.. +++|++|++++|.+.+..+..++.+++|+.|++++|.+++. .+..+..+++|+.|++++|. +..++ .
T Consensus 128 -----~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 199 (272)
T 3rfs_A 128 -----VFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQ-LKSVPDG 199 (272)
T ss_dssp -----TTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred -----Hhcc-CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCc-CCccCHH
Confidence 1233 78888888988988766666789999999999999988763 24446789999999999985 55554 4
Q ss_pred cCCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecC
Q 048418 684 GTGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWP 723 (798)
Q Consensus 684 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 723 (798)
.++.+++|+.|++++|+... .+++|+.++++.|
T Consensus 200 ~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n 232 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWIN 232 (272)
T ss_dssp TTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHH
T ss_pred HHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHH
Confidence 47899999999999998654 3456777776665
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=5.1e-17 Score=171.01 Aligned_cols=202 Identities=18% Similarity=0.107 Sum_probs=132.3
Q ss_pred hhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCcee
Q 048418 442 CEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHL 521 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 521 (798)
+.++++++.++++++.++.+|..+. ++|++|++++|.++.++...|.++++|++|++++|.+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 4677888999999988888887765 6889999999998877655458899999999999988888764 788889999
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCC
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKM 601 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~ 601 (798)
++++|.+.. +| .. +..+++|+.|+++++. .....+..+..
T Consensus 83 ~Ls~N~l~~--l~--------------------~~-~~~l~~L~~L~l~~N~--l~~l~~~~~~~--------------- 122 (290)
T 1p9a_G 83 DLSHNQLQS--LP--------------------LL-GQTLPALTVLDVSFNR--LTSLPLGALRG--------------- 122 (290)
T ss_dssp ECCSSCCSS--CC--------------------CC-TTTCTTCCEEECCSSC--CCCCCSSTTTT---------------
T ss_pred ECCCCcCCc--Cc--------------------hh-hccCCCCCEEECCCCc--CcccCHHHHcC---------------
Confidence 888887752 22 22 4556666666666652 11111122223
Q ss_pred CCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcc
Q 048418 602 PAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEW 681 (798)
Q Consensus 602 ~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l 681 (798)
+++|++|++++|.+....+..+..+++|+.|++++|.++.. .+..+..+++|+.|+|++| .+..+
T Consensus 123 -------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N-~l~~i 187 (290)
T 1p9a_G 123 -------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQEN-SLYTI 187 (290)
T ss_dssp -------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred -------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCC-cCCcc
Confidence 45555555555555544444455666666666666655531 1223345666666666665 45566
Q ss_pred eecCCcccccceeeEeeCCC
Q 048418 682 TMGTGAMPKLEFLIINPCAY 701 (798)
Q Consensus 682 ~~~~~~l~~L~~L~l~~c~~ 701 (798)
|..+..+++|+.|++++|+.
T Consensus 188 p~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCB
T ss_pred ChhhcccccCCeEEeCCCCc
Confidence 66666666666666666664
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=5.9e-17 Score=169.37 Aligned_cols=125 Identities=22% Similarity=0.193 Sum_probs=79.7
Q ss_pred CceeEEEecCcccccCcc-cccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccch-hhhcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA-DEFWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L 523 (798)
+.|++|++++|.++.++. .+.++++|++|++++|.+..++...|.++++|++|++++|.+..++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357788888887775544 6777788888888888777776644477788888888888777664 55777788888888
Q ss_pred CCcccCCCCCC-CCCCCCCcceeecCCC---C-cchhhhcCCCCCCCeEEEecc
Q 048418 524 GSITLPAHPGK-YCGSLENLNFISALHP---C-CCTEDILGRLPNLRNLRIWGD 572 (798)
Q Consensus 524 ~~~~i~~~~~p-~i~~L~~L~~l~~~~~---~-~~~~~~l~~l~~L~~L~l~~~ 572 (798)
++|.+.. ..+ .++++++|+.+++... . ..+.. ++.+++|+.|++++|
T Consensus 108 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 108 VETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSS
T ss_pred CCCCccc-cCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCC
Confidence 7777653 111 3444444444444421 1 12333 555566666666555
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=9.1e-19 Score=192.64 Aligned_cols=266 Identities=15% Similarity=0.169 Sum_probs=135.5
Q ss_pred EecCcccccCcccccCcCccceEEecCCCccc-----cChhhhhCCCCCcEeeccccccc----cchhhh-------ccc
Q 048418 452 DLGSLVLIQYPSGIENLFLLRYLKLNIPSLKS-----LPPSLLSNLPNLYTLDMPFSYID----HTADEF-------WKM 515 (798)
Q Consensus 452 ~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~l~----~lp~~i-------~~L 515 (798)
.++...+..++..+..+++|++|+|++|.+.. ++..+ .++++|++|+|++|.+. .+|..+ ..+
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence 33333344555555666666666666665552 22223 45666666666665332 223332 566
Q ss_pred ccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhh----hHHHhccCCCCCC
Q 048418 516 NKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQF----LLSQSLCRLSCLE 591 (798)
Q Consensus 516 ~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~l~~~l~~l~~L~ 591 (798)
++|++|++++|.+..... ...+.. +..+++|+.|++++|. ... .++..+..+.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~-----------------~~l~~~-l~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~l~--- 150 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQ-----------------EPLIDF-LSKHTPLEHLYLHNNG--LGPQAGAKIARALQELA--- 150 (386)
T ss_dssp TTCCEEECCSCCCCTTTH-----------------HHHHHH-HHHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHH---
T ss_pred CcccEEECCCCcCCHHHH-----------------HHHHHH-HHhCCCCCEEECcCCC--CCHHHHHHHHHHHHHHh---
Confidence 666666666666541000 012223 5556666666666653 211 1222222220
Q ss_pred EEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCc----cccccCcccceEEEeeccccCCe----eeeCCCC
Q 048418 592 SLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPM----PALEKMPLLQVLKLKQNSYSGRK----LTCGSDG 663 (798)
Q Consensus 592 ~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~~~----~~~~~~~ 663 (798)
...+. .. .++|++|++++|.++.... ..+..+++|+.|++++|.+.... .+..+..
T Consensus 151 ~~~~~---------------~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 151 VNKKA---------------KN-APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHH---------------HT-CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred hhhhc---------------cc-CCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 00000 00 1455555555555442222 23445666777777666554221 1214456
Q ss_pred CccccEEEeecCCCC----CcceecCCcccccceeeEeeCCCCCC----CCccC--CCCCCCCEEEEecCcHHHHHHHhc
Q 048418 664 FPNLKVLHLKSMLWL----EEWTMGTGAMPKLEFLIINPCAYLKK----MPEQL--WCIKSLNKFDCWWPQPELRQKLRE 733 (798)
Q Consensus 664 ~~~L~~L~L~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~----lp~~l--~~l~~L~~L~l~~c~~~~~~~l~~ 733 (798)
+++|++|+|++|..- ..++..+..+++|+.|++++|..... +|..+ ..+++|+.|+|++|...-. .+..
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~-g~~~ 293 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD-AVRT 293 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH-HHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH-HHHH
Confidence 677777777776431 34555666777777777777764332 34444 3377788888887763210 1111
Q ss_pred CCCcc-cCCCceeEeeccccccccCC
Q 048418 734 FEDKE-QSIPPLAHFMEYESQITETE 758 (798)
Q Consensus 734 ~~~~i-~~l~~L~~l~l~~n~l~~~~ 758 (798)
.+..+ .++|+|+.|++++|.+++..
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhcCCCceEEEccCCcCCcch
Confidence 11222 34677888888888877654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1.3e-16 Score=169.59 Aligned_cols=205 Identities=19% Similarity=0.185 Sum_probs=133.0
Q ss_pred EecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCcccCCC
Q 048418 452 DLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAH 531 (798)
Q Consensus 452 ~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~ 531 (798)
.+..+.+.... ....+++|++|++++|.+..+| .+ ..+++|++|++++|.+..+|. +..+++|++|++++|.+..
T Consensus 25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~- 99 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN- 99 (308)
T ss_dssp HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-
T ss_pred HhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-
Confidence 44444444322 3567889999999999999987 46 899999999999999999988 9999999999999998862
Q ss_pred CCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeec
Q 048418 532 PGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVE 611 (798)
Q Consensus 532 ~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~ 611 (798)
+.. +..+++|+.|++++|. ...++ .+..+++|+.|++++|. ++.+.. +
T Consensus 100 ----------------------~~~-~~~l~~L~~L~l~~n~---l~~~~-~l~~l~~L~~L~l~~n~----l~~~~~-l 147 (308)
T 1h6u_A 100 ----------------------VSA-IAGLQSIKTLDLTSTQ---ITDVT-PLAGLSNLQVLYLDLNQ----ITNISP-L 147 (308)
T ss_dssp ----------------------CGG-GTTCTTCCEEECTTSC---CCCCG-GGTTCTTCCEEECCSSC----CCCCGG-G
T ss_pred ----------------------chh-hcCCCCCCEEECCCCC---CCCch-hhcCCCCCCEEECCCCc----cCcCcc-c
Confidence 123 6777788888887773 22222 25566666666666654 221111 2
Q ss_pred CCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCccccc
Q 048418 612 YQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKL 691 (798)
Q Consensus 612 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L 691 (798)
.. +++|++|++++|.+.+. +.+..+++|+.|++++|.+++.. .+..+++|+.|++++| .+..++ .+..+++|
T Consensus 148 ~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L 219 (308)
T 1h6u_A 148 AG-LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDIS---PLASLPNLIEVHLKNN-QISDVS-PLANTSNL 219 (308)
T ss_dssp GG-CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECTTS-CCCBCG-GGTTCTTC
T ss_pred cC-CCCccEEEccCCcCCCC--hhhcCCCCCCEEECCCCccCcCh---hhcCCCCCCEEEccCC-ccCccc-cccCCCCC
Confidence 33 56666666666665432 22566666666666666555421 1445666666666665 334343 24556666
Q ss_pred ceeeEeeCCC
Q 048418 692 EFLIINPCAY 701 (798)
Q Consensus 692 ~~L~l~~c~~ 701 (798)
+.|++++|+.
T Consensus 220 ~~L~l~~N~i 229 (308)
T 1h6u_A 220 FIVTLTNQTI 229 (308)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEccCCee
Confidence 6666666653
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=8.3e-18 Score=184.98 Aligned_cols=196 Identities=17% Similarity=0.126 Sum_probs=116.4
Q ss_pred HHHhhccCceeEEEecCcccc-c----CcccccCcCccceEEecCCCcc----ccChhh------hhCCCCCcEeecccc
Q 048418 439 EKICEMFKLLRVLDLGSLVLI-Q----YPSGIENLFLLRYLKLNIPSLK----SLPPSL------LSNLPNLYTLDMPFS 503 (798)
Q Consensus 439 ~~~~~~~~~Lr~L~L~~~~i~-~----lp~~i~~L~~Lr~L~L~~~~i~----~lp~~i------~~~L~~L~~L~L~~~ 503 (798)
...+..+++|++|+|++|.+. . ++..+..+++|++|+|++|.+. .+|..+ +.++++|++|+|++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 355678888999999999876 2 4455778899999999987554 334433 268899999999999
Q ss_pred cccc-----chhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCC---------CCCCeEEE
Q 048418 504 YIDH-----TADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRL---------PNLRNLRI 569 (798)
Q Consensus 504 ~l~~-----lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l---------~~L~~L~l 569 (798)
.+.. +|..+.++++|++|++++|.+.... + ...... +..+ ++|+.|++
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~----------------~~l~~~-l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA-G----------------AKIARA-LQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH-H----------------HHHHHH-HHHHHHHHHHHTCCCCCEEEC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH-H----------------HHHHHH-HHHHhhhhhcccCCCCcEEEC
Confidence 7766 7888889999999999988774100 0 001111 2233 77888888
Q ss_pred ecccc--hhhhhHHHhccCCCCCCEEEEecCCCCC-CCceeee-ecCCCCCCeeEEEEEeccCC----CCCccccccCcc
Q 048418 570 WGDLS--YYQFLLSQSLCRLSCLESLKLVNESKMP-AFSKIVL-VEYQFPPRLTHLSFSNTELM----EDPMPALEKMPL 641 (798)
Q Consensus 570 ~~~~~--~~~~~l~~~l~~l~~L~~L~l~~n~i~~-~L~~L~l-~~~~~l~~L~~L~L~~~~l~----~~~~~~l~~l~~ 641 (798)
++|.- .....+...+..+++|+.|++++|.+-. .+..+.. ++.. +++|++|+|++|.++ ...+..+..+++
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 77741 1112222455566666666666644100 0000100 1222 455555555555543 223334455555
Q ss_pred cceEEEeecccc
Q 048418 642 LQVLKLKQNSYS 653 (798)
Q Consensus 642 L~~L~L~~~~~~ 653 (798)
|+.|+|++|.++
T Consensus 246 L~~L~L~~n~i~ 257 (386)
T 2ca6_A 246 LRELGLNDCLLS 257 (386)
T ss_dssp CCEEECTTCCCC
T ss_pred cCEEECCCCCCc
Confidence 555555555443
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=2.8e-16 Score=165.39 Aligned_cols=200 Identities=22% Similarity=0.226 Sum_probs=157.8
Q ss_pred cccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccc-hhhhcccccCceeccCCcccCCCCCCCCCCCCCc
Q 048418 464 GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENL 542 (798)
Q Consensus 464 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L 542 (798)
.++++++|+.++++++.++.+|..+ . ++|+.|++++|.+..+ |..+..+++|++|++++|.+..
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~-~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------ 69 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------ 69 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------------
T ss_pred cccccCCccEEECCCCCCCcCCCCC-C--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------------
Confidence 3677889999999999999999877 3 6899999999988877 5678899999999999887752
Q ss_pred ceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEE
Q 048418 543 NFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLS 622 (798)
Q Consensus 543 ~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~ 622 (798)
+.. .+.+++|+.|+++++ . ++.+...+.. +++|++|+
T Consensus 70 -----------~~~-~~~l~~L~~L~Ls~N--------------------------~----l~~l~~~~~~-l~~L~~L~ 106 (290)
T 1p9a_G 70 -----------LQV-DGTLPVLGTLDLSHN--------------------------Q----LQSLPLLGQT-LPALTVLD 106 (290)
T ss_dssp -----------EEC-CSCCTTCCEEECCSS--------------------------C----CSSCCCCTTT-CTTCCEEE
T ss_pred -----------ccC-CCCCCcCCEEECCCC--------------------------c----CCcCchhhcc-CCCCCEEE
Confidence 111 345666777776666 2 1111112333 78899999
Q ss_pred EEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceec-CCcccccceeeEeeCCC
Q 048418 623 FSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG-TGAMPKLEFLIINPCAY 701 (798)
Q Consensus 623 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~ 701 (798)
+++|.++...+..+..+++|+.|++++|.+... .+..+..+++|+.|+|++| .++.+|.. +..+++|+.|++++|.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~- 183 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS- 183 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc-
Confidence 999998877677899999999999999988763 3444678999999999998 56777654 5789999999999997
Q ss_pred CCCCCccCCCCCCCCEEEEecCc
Q 048418 702 LKKMPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 702 l~~lp~~l~~l~~L~~L~l~~c~ 724 (798)
+..+|..+..+++|+.|++++||
T Consensus 184 l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 184 LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCccChhhcccccCCeEEeCCCC
Confidence 55799999999999999999886
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=7.2e-16 Score=160.57 Aligned_cols=197 Identities=18% Similarity=0.193 Sum_probs=142.3
Q ss_pred ccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCceeccCCcccCCCCCCCCCCCCCcceeecC
Q 048418 470 LLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISAL 548 (798)
Q Consensus 470 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~ 548 (798)
++++++++++.++.+|..+ . .+|+.|++++|.+..+|. .+.++++|++|++++|.+.. +
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--i--------------- 76 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-P--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--L--------------- 76 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-C--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC--C---------------
T ss_pred CCCEEEccCCCCCccCCCC-C--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe--e---------------
Confidence 5789999999999999866 3 689999999998888864 68889999999998887752 1
Q ss_pred CCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccC
Q 048418 549 HPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTEL 628 (798)
Q Consensus 549 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l 628 (798)
+...+..+++|+.|+++++. ...+ ++. .+.. +++|++|++++|.+
T Consensus 77 -----~~~~~~~l~~L~~L~l~~n~---l~~~--------------------~~~------~~~~-l~~L~~L~l~~n~l 121 (270)
T 2o6q_A 77 -----PAGIFKELKNLETLWVTDNK---LQAL--------------------PIG------VFDQ-LVNLAELRLDRNQL 121 (270)
T ss_dssp -----CTTTTSSCTTCCEEECCSSC---CCCC--------------------CTT------TTTT-CSSCCEEECCSSCC
T ss_pred -----ChhhhcCCCCCCEEECCCCc---CCcC--------------------CHh------Hccc-ccCCCEEECCCCcc
Confidence 11214566777777776662 1111 110 1223 67888888888887
Q ss_pred CCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCccee-cCCcccccceeeEeeCCCCCCCCc
Q 048418 629 MEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTM-GTGAMPKLEFLIINPCAYLKKMPE 707 (798)
Q Consensus 629 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~ 707 (798)
....+..++.+++|+.|++++|.+... .+..+..+++|+.|++++| .+..++. .+..+++|+.|++++|... .+|.
T Consensus 122 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~ 198 (270)
T 2o6q_A 122 KSLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE 198 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred CeeCHHHhCcCcCCCEEECCCCcCCcc-CHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCC-cCCH
Confidence 766667788899999999998877752 2334677888999999887 4555543 4677888888888888644 4444
Q ss_pred -cCCCCCCCCEEEEecCc
Q 048418 708 -QLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 708 -~l~~l~~L~~L~l~~c~ 724 (798)
.+..+++|+.|++++|+
T Consensus 199 ~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhccccCCCEEEecCCC
Confidence 46778888888888876
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=2.4e-16 Score=160.94 Aligned_cols=208 Identities=18% Similarity=0.261 Sum_probs=134.8
Q ss_pred cccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccc-cccchh-hhcccccCceeccCC-cccCCCCCC
Q 048418 458 LIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSY-IDHTAD-EFWKMNKLKHLNFGS-ITLPAHPGK 534 (798)
Q Consensus 458 i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~-l~~lp~-~i~~L~~L~~L~L~~-~~i~~~~~p 534 (798)
++.+|. +. .+|++|++++|.++.+|+..|.++++|++|++++|. +..+|. .+.++++|++|++++ |.+..
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---- 95 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---- 95 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----
Confidence 556666 43 378888888888887777544778888888888885 777754 567777777777776 66541
Q ss_pred CCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCC
Q 048418 535 YCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQF 614 (798)
Q Consensus 535 ~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~ 614 (798)
..+.. +..+++|+.|+++++. ...+|. +..+++
T Consensus 96 -----------------i~~~~-f~~l~~L~~L~l~~n~---l~~lp~-~~~l~~------------------------- 128 (239)
T 2xwt_C 96 -----------------IDPDA-LKELPLLKFLGIFNTG---LKMFPD-LTKVYS------------------------- 128 (239)
T ss_dssp -----------------ECTTS-EECCTTCCEEEEEEEC---CCSCCC-CTTCCB-------------------------
T ss_pred -----------------cCHHH-hCCCCCCCEEeCCCCC---Cccccc-cccccc-------------------------
Confidence 11122 5566777777777762 111221 111111
Q ss_pred CCCeeEEEEEec-cCCCCCccccccCcccc-eEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce-ecCCcc-cc
Q 048418 615 PPRLTHLSFSNT-ELMEDPMPALEKMPLLQ-VLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGTGAM-PK 690 (798)
Q Consensus 615 l~~L~~L~L~~~-~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l-~~ 690 (798)
+..|++|++++| .+....+..+..+++|+ .|++++|.++. ++......++|+.|++++|+.++.++ ..+..+ ++
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 222347777777 66554455677888888 88888777762 33322223788888888886577664 346677 88
Q ss_pred cceeeEeeCCCCCCCCccCCCCCCCCEEEEecCc
Q 048418 691 LEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 691 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 724 (798)
|+.|++++|.. ..+|.. .+++|+.|+++++.
T Consensus 207 L~~L~l~~N~l-~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 207 PSLLDVSQTSV-TALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CSEEECTTCCC-CCCCCT--TCTTCSEEECTTC-
T ss_pred CcEEECCCCcc-ccCChh--HhccCceeeccCcc
Confidence 89999988764 457764 67888888888774
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=7.7e-16 Score=166.78 Aligned_cols=241 Identities=16% Similarity=0.101 Sum_probs=145.4
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeecccccc-ccchh-hhcccccCcee-ccCC
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYI-DHTAD-EFWKMNKLKHL-NFGS 525 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l-~~lp~-~i~~L~~L~~L-~L~~ 525 (798)
++++.++++++++|..+. .++++|+|++|.|+.+|+..|.++++|++|+|++|.+ +.+|. .+.++++|+.+ .++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 456666666777776652 4677777777777777766557777777777777754 33443 35566666553 3333
Q ss_pred cccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCc
Q 048418 526 ITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFS 605 (798)
Q Consensus 526 ~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~ 605 (798)
|.+.. ..+.. +..+++|+.|+++++. .....+..+....++..|++.. ...+.
T Consensus 90 N~l~~---------------------l~~~~-f~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~l~~l~l~~---~~~i~ 142 (350)
T 4ay9_X 90 NNLLY---------------------INPEA-FQNLPNLQYLLISNTG--IKHLPDVHKIHSLQKVLLDIQD---NINIH 142 (350)
T ss_dssp TTCCE---------------------ECTTS-BCCCTTCCEEEEEEEC--CSSCCCCTTCCBSSCEEEEEES---CTTCC
T ss_pred Ccccc---------------------cCchh-hhhccccccccccccc--cccCCchhhcccchhhhhhhcc---ccccc
Confidence 44421 11222 5666666666666662 1111111223334555666654 22233
Q ss_pred eeee-ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceec
Q 048418 606 KIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMG 684 (798)
Q Consensus 606 ~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 684 (798)
.+.. .+......++.|++++|.++. ++......++|+.|.+.++..........+.++++|++|++++| .++.+|.
T Consensus 143 ~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~- 219 (350)
T 4ay9_X 143 TIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS- 219 (350)
T ss_dssp EECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS-
T ss_pred cccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh-
Confidence 3322 122213567888888888753 33444455678888887544333333345677888888888887 5777764
Q ss_pred CCcccccceeeEeeCCCCCCCCccCCCCCCCCEEEEecC
Q 048418 685 TGAMPKLEFLIINPCAYLKKMPEQLWCIKSLNKFDCWWP 723 (798)
Q Consensus 685 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 723 (798)
+.+.+|+.|.+.+|..++.+|. +..+++|+.+++.++
T Consensus 220 -~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 220 -YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp -SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred -hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 4577888888888888888885 778888888888643
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=3.2e-16 Score=160.05 Aligned_cols=195 Identities=20% Similarity=0.219 Sum_probs=121.0
Q ss_pred CceeEEEecCcccccCcc-cccCcCccceEEecCCC-ccccChhhhhCCCCCcEeeccc-cccccch-hhhcccccCcee
Q 048418 446 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPS-LKSLPPSLLSNLPNLYTLDMPF-SYIDHTA-DEFWKMNKLKHL 521 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~-i~~lp~~i~~~L~~L~~L~L~~-~~l~~lp-~~i~~L~~L~~L 521 (798)
+.|+.|++++|.++.+|. .+..+++|++|++++|. ++.+|+..|.++++|++|++++ |.+..+| ..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 379999999999997765 68899999999999997 8888886568999999999998 7888886 467899999999
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCC---eEEEecccchhhhhHH-HhccCCCCCC-EEEEe
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLR---NLRIWGDLSYYQFLLS-QSLCRLSCLE-SLKLV 596 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~l~-~~l~~l~~L~-~L~l~ 596 (798)
++++|.+.. +| . +..+++|+ .|+++++. ....++ ..+..+++|+ .|+++
T Consensus 111 ~l~~n~l~~--lp---------------------~-~~~l~~L~~L~~L~l~~N~--~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 111 GIFNTGLKM--FP---------------------D-LTKVYSTDIFFILEITDNP--YMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEECCCS--CC---------------------C-CTTCCBCCSEEEEEEESCT--TCCEECTTTTTTTBSSEEEEECC
T ss_pred eCCCCCCcc--cc---------------------c-cccccccccccEEECCCCc--chhhcCcccccchhcceeEEEcC
Confidence 999998753 22 1 34445555 77777761 111222 2344555555 55555
Q ss_pred cCCCCCCCceeeeecCCCCCCeeEEEEEecc-CCCCCccccccC-cccceEEEeeccccCCeeeeCCCCCccccEEEeec
Q 048418 597 NESKMPAFSKIVLVEYQFPPRLTHLSFSNTE-LMEDPMPALEKM-PLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKS 674 (798)
Q Consensus 597 ~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~ 674 (798)
+|. ++.+...... .++|++|++++|+ +....+..+..+ ++|+.|++++|.++. ++. ..|++|+.|.+.+
T Consensus 165 ~n~----l~~i~~~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~--l~~--~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 165 NNG----FTSVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LPS--KGLEHLKELIARN 235 (239)
T ss_dssp SCC----CCEECTTTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC--CCC--TTCTTCSEEECTT
T ss_pred CCC----CcccCHhhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc--CCh--hHhccCceeeccC
Confidence 443 2222211112 2445555555552 433333344444 555555555444432 111 1344455554444
Q ss_pred C
Q 048418 675 M 675 (798)
Q Consensus 675 ~ 675 (798)
+
T Consensus 236 ~ 236 (239)
T 2xwt_C 236 T 236 (239)
T ss_dssp C
T ss_pred c
Confidence 3
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.61 E-value=1.8e-16 Score=172.65 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=20.6
Q ss_pred CeeEEEEEeccCCCCCcccc----ccC-cccceEEEeeccccC
Q 048418 617 RLTHLSFSNTELMEDPMPAL----EKM-PLLQVLKLKQNSYSG 654 (798)
Q Consensus 617 ~L~~L~L~~~~l~~~~~~~l----~~l-~~L~~L~L~~~~~~~ 654 (798)
+|++|++++|.++...+..+ ..+ ++|+.|+|++|.+.+
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 66666666666554444332 233 366666666555543
No 95
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.60 E-value=1.4e-15 Score=134.38 Aligned_cols=85 Identities=22% Similarity=0.302 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHhhcchhhcccccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccCChHHHHHHHHHHHHHh
Q 048418 3 INFRLFSERLGRVLAGEEVTLPDAAKQPIQNLHAEVEIVTSWLSEFEDDISCLLMQKIGELEIDNPDLGTVMDEINCFTY 82 (798)
Q Consensus 3 ~~v~~~~~kl~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~~ 82 (798)
|+|+++++||++++. +|+.++.|++++++.|+++|++|+++|.+|+.+. ++ ..++.++.|+++||+++|
T Consensus 1 a~v~~ll~KL~~ll~-~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~----~~------~~d~~vk~W~~~vrdlaY 69 (115)
T 3qfl_A 1 AAISNLIPKLGELLT-EEFKLHKGVKKNIEDLGKELESMNAALIKIGEVP----RE------QLDSQDKLWADEVRELSY 69 (115)
T ss_dssp CTTCSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC----GG------GCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhc----cc------cCCHHHHHHHHHHHHHHH
Confidence 678999999999999 9999999999999999999999999999999861 02 578999999999999999
Q ss_pred HHHHHHHHhHhhhhcc
Q 048418 83 ECEKVIDTFVNSITQQ 98 (798)
Q Consensus 83 ~~ed~~d~~~~~~~~~ 98 (798)
|+||++|+|.++....
T Consensus 70 D~ED~iD~f~~~~~~~ 85 (115)
T 3qfl_A 70 VIEDVVDKFLVQVDGI 85 (115)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999988653
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=5.6e-16 Score=164.90 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=50.9
Q ss_pred cCceeEEEecCcccc-cCcccc--cCcCccceEEecCCCccc-cC----hhhhhCCCCCcEeeccccccccch-hhhccc
Q 048418 445 FKLLRVLDLGSLVLI-QYPSGI--ENLFLLRYLKLNIPSLKS-LP----PSLLSNLPNLYTLDMPFSYIDHTA-DEFWKM 515 (798)
Q Consensus 445 ~~~Lr~L~L~~~~i~-~lp~~i--~~L~~Lr~L~L~~~~i~~-lp----~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L 515 (798)
+++|+.|++++|.+. ..|..+ +.+++|++|++++|.+.. .| ..+ ..+++|++|++++|.+..+| ..++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeCCCcchhhHHHhccC
Confidence 445777777777665 555555 666777777777776663 22 222 45666677777666665553 455666
Q ss_pred ccCceeccCCccc
Q 048418 516 NKLKHLNFGSITL 528 (798)
Q Consensus 516 ~~L~~L~L~~~~i 528 (798)
++|++|++++|.+
T Consensus 169 ~~L~~L~Ls~N~l 181 (310)
T 4glp_A 169 PALTSLDLSDNPG 181 (310)
T ss_dssp TTCCEEECCSCTT
T ss_pred CCCCEEECCCCCC
Confidence 6666666666654
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=3.5e-16 Score=170.29 Aligned_cols=242 Identities=16% Similarity=0.111 Sum_probs=154.9
Q ss_pred hhHHHhhccCceeEEEecCcccccCc-----ccccCcC-ccceEEecCCCccccChhhhhCC-----CCCcEeecccccc
Q 048418 437 DWEKICEMFKLLRVLDLGSLVLIQYP-----SGIENLF-LLRYLKLNIPSLKSLPPSLLSNL-----PNLYTLDMPFSYI 505 (798)
Q Consensus 437 ~~~~~~~~~~~Lr~L~L~~~~i~~lp-----~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~~L-----~~L~~L~L~~~~l 505 (798)
.++.++...++|+.|+|++|.++..+ ..+..++ +|++|+|++|.+.......+..+ ++|++|++++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 45566667777999999999988554 5677888 89999999999886543322654 8999999999988
Q ss_pred ccch-hh----hccc-ccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCC-CCCCCeEEEecccc--hh
Q 048418 506 DHTA-DE----FWKM-NKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGR-LPNLRNLRIWGDLS--YY 576 (798)
Q Consensus 506 ~~lp-~~----i~~L-~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~--~~ 576 (798)
...+ .. +..+ ++|++|++++|.+.... ...+...+.. .++|+.|++++|.- ..
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~------------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS------------------SSEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC------------------HHHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH------------------HHHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 7653 33 4444 89999999999886310 1111111444 35788888888741 12
Q ss_pred hhhHHHhccCCC-CCCEEEEecCCCCCCCceeee-----ecCCCC-CCeeEEEEEeccCCCCCc----ccccc-Ccccce
Q 048418 577 QFLLSQSLCRLS-CLESLKLVNESKMPAFSKIVL-----VEYQFP-PRLTHLSFSNTELMEDPM----PALEK-MPLLQV 644 (798)
Q Consensus 577 ~~~l~~~l~~l~-~L~~L~l~~n~i~~~L~~L~l-----~~~~~l-~~L~~L~L~~~~l~~~~~----~~l~~-l~~L~~ 644 (798)
...++..+..++ +|++|++++|.+ ..... .+.. + ++|++|++++|.+..... ..+.. .++|+.
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l----~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNL----ASKNCAELAKFLAS-IPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCG----GGSCHHHHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred HHHHHHHHhcCCccccEeeecCCCC----chhhHHHHHHHHHh-CCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 235566666665 888888888662 21111 1223 3 588888888888765433 23334 347888
Q ss_pred EEEeeccccCCee---eeCCCCCccccEEEeecCCC-------CCcceecCCcccccceeeEeeCCC
Q 048418 645 LKLKQNSYSGRKL---TCGSDGFPNLKVLHLKSMLW-------LEEWTMGTGAMPKLEFLIINPCAY 701 (798)
Q Consensus 645 L~L~~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~-------l~~l~~~~~~l~~L~~L~l~~c~~ 701 (798)
|+|++|.+.+... ...+..+++|++|++++|.. +..++..+..+++|+.|++++|+.
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 8888887766322 23345667777777777630 112233445566666666666653
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=4.2e-15 Score=152.91 Aligned_cols=176 Identities=22% Similarity=0.242 Sum_probs=115.2
Q ss_pred CceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCceeccC
Q 048418 446 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNFG 524 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~ 524 (798)
...+.++++++.++.+|..+. .+|++|+|++|.+..++...|.++++|++|++++|.+..++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457789999999988888776 589999999999987777555899999999999998887754 47889999999999
Q ss_pred CcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCC
Q 048418 525 SITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAF 604 (798)
Q Consensus 525 ~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L 604 (798)
+|.+.. ..+.. +..+++|+.|+++++. .....+..+..
T Consensus 92 ~n~l~~---------------------~~~~~-~~~l~~L~~L~L~~N~--l~~~~~~~~~~------------------ 129 (251)
T 3m19_A 92 NNQLAS---------------------LPLGV-FDHLTQLDKLYLGGNQ--LKSLPSGVFDR------------------ 129 (251)
T ss_dssp TSCCCC---------------------CCTTT-TTTCTTCCEEECCSSC--CCCCCTTTTTT------------------
T ss_pred CCcccc---------------------cChhH-hcccCCCCEEEcCCCc--CCCcChhHhcc------------------
Confidence 988752 11122 5666777777777762 11111111233
Q ss_pred ceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCC
Q 048418 605 SKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSML 676 (798)
Q Consensus 605 ~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 676 (798)
+++|++|++++|.+....+..++.+++|+.|+|++|.+... .+..+..+++|+.|++++|+
T Consensus 130 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 130 ----------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred ----------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCc
Confidence 45555555555555444444455566666666665555532 12234455666666666654
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=5e-15 Score=155.86 Aligned_cols=172 Identities=24% Similarity=0.262 Sum_probs=109.4
Q ss_pred hccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceec
Q 048418 443 EMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLN 522 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 522 (798)
..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++. + +++++|++|++++|.+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 46777888888888887765 47778888888888888887776 5 888888888888888777765 78888888888
Q ss_pred cCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCC
Q 048418 523 FGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMP 602 (798)
Q Consensus 523 L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~ 602 (798)
+++|.+.. +.. +..+++|+.|++++|. ...+ ..+..+++|+.|++++|.
T Consensus 119 L~~n~i~~-----------------------~~~-l~~l~~L~~L~l~~n~---l~~~-~~l~~l~~L~~L~L~~N~--- 167 (291)
T 1h6t_A 119 LEHNGISD-----------------------ING-LVHLPQLESLYLGNNK---ITDI-TVLSRLTKLDTLSLEDNQ--- 167 (291)
T ss_dssp CTTSCCCC-----------------------CGG-GGGCTTCCEEECCSSC---CCCC-GGGGGCTTCSEEECCSSC---
T ss_pred CCCCcCCC-----------------------Chh-hcCCCCCCEEEccCCc---CCcc-hhhccCCCCCEEEccCCc---
Confidence 88887752 123 5566677777777662 1111 344455555555555544
Q ss_pred CCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccC
Q 048418 603 AFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSG 654 (798)
Q Consensus 603 ~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 654 (798)
++.+.. +.. +++|++|++++|.++. .+.+..+++|+.|++++|.+..
T Consensus 168 -l~~~~~-l~~-l~~L~~L~L~~N~i~~--l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 168 -ISDIVP-LAG-LTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CCCCGG-GTT-CTTCCEEECCSSCCCB--CGGGTTCTTCSEEEEEEEEEEC
T ss_pred -cccchh-hcC-CCccCEEECCCCcCCC--ChhhccCCCCCEEECcCCcccC
Confidence 111111 223 5555555555555432 2335555566666665555443
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=160.31 Aligned_cols=223 Identities=19% Similarity=0.215 Sum_probs=142.8
Q ss_pred ceeEEEecCcccc--cCcc--cccCcCccceEEecCCCcc-ccChhhh-hCCCCCcEeeccccccccc-h----hhhccc
Q 048418 447 LLRVLDLGSLVLI--QYPS--GIENLFLLRYLKLNIPSLK-SLPPSLL-SNLPNLYTLDMPFSYIDHT-A----DEFWKM 515 (798)
Q Consensus 447 ~Lr~L~L~~~~i~--~lp~--~i~~L~~Lr~L~L~~~~i~-~lp~~i~-~~L~~L~~L~L~~~~l~~l-p----~~i~~L 515 (798)
.++.|.+.++.+. .+.. ....+++|++|++++|.+. ..|..++ +++++|++|++++|.+... | ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4677888887764 1211 1223567999999999988 4555443 7899999999999987652 2 345689
Q ss_pred ccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHh--ccCCCCCCEE
Q 048418 516 NKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQS--LCRLSCLESL 593 (798)
Q Consensus 516 ~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~--l~~l~~L~~L 593 (798)
++|++|++++|.+.. ..+.. ++.+++|+.|++++|.-.....++.. +..+++|++|
T Consensus 145 ~~L~~L~Ls~n~l~~---------------------~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 145 PGLKVLSIAQAHSPA---------------------FSCEQ-VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL 202 (310)
T ss_dssp SCCCEEEEECCSSCC---------------------CCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred cCCCEEEeeCCCcch---------------------hhHHH-hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence 999999999998852 11222 55566666666666521111112222 2455666666
Q ss_pred EEecCCCCCCCceeee---e-cCCCCCCeeEEEEEeccCCCCCccccccC---cccceEEEeeccccCCeeeeCCCCCcc
Q 048418 594 KLVNESKMPAFSKIVL---V-EYQFPPRLTHLSFSNTELMEDPMPALEKM---PLLQVLKLKQNSYSGRKLTCGSDGFPN 666 (798)
Q Consensus 594 ~l~~n~i~~~L~~L~l---~-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l---~~L~~L~L~~~~~~~~~~~~~~~~~~~ 666 (798)
++++|. ++.+.. + +.. +++|++|++++|.+.+..|+.+..+ ++|+.|++++|.++. ++..+ +++
T Consensus 203 ~Ls~N~----l~~l~~~~~~l~~~-l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~ 273 (310)
T 4glp_A 203 ALRNTG----METPTGVCAALAAA-GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAK 273 (310)
T ss_dssp BCCSSC----CCCHHHHHHHHHHH-TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSC
T ss_pred ECCCCC----CCchHHHHHHHHhc-CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhh--cCC
Confidence 666655 222111 1 123 5777777777777766555556555 688888888777763 33333 378
Q ss_pred ccEEEeecCCCCCcceecCCcccccceeeEeeCCCC
Q 048418 667 LKVLHLKSMLWLEEWTMGTGAMPKLEFLIINPCAYL 702 (798)
Q Consensus 667 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 702 (798)
|+.|+|++| .++.+|. +..+++|+.|++++|+..
T Consensus 274 L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 274 LRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred CCEEECCCC-cCCCCch-hhhCCCccEEECcCCCCC
Confidence 888888887 4556554 567788888888888754
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.6e-15 Score=175.14 Aligned_cols=188 Identities=23% Similarity=0.201 Sum_probs=111.0
Q ss_pred cCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccC
Q 048418 445 FKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFG 524 (798)
Q Consensus 445 ~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~ 524 (798)
+..+..+.+..+.+..++ .+..|.+|++|++++|.+..+|. + ..|++|+.|+|++|.+..+|. +..+++|++|+|+
T Consensus 20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~~-l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCTT-G-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCChH-H-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 334445556665555333 35667788888888888777763 4 778888888888887777766 7788888888888
Q ss_pred CcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCC
Q 048418 525 SITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAF 604 (798)
Q Consensus 525 ~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L 604 (798)
+|.+.. + .. +..+++|+.|++++|. ...+ ..+..+++|+.|+|++|. +
T Consensus 96 ~N~l~~--l---------------------~~-l~~l~~L~~L~Ls~N~---l~~l-~~l~~l~~L~~L~Ls~N~----l 143 (605)
T 1m9s_A 96 ENKIKD--L---------------------SS-LKDLKKLKSLSLEHNG---ISDI-NGLVHLPQLESLYLGNNK----I 143 (605)
T ss_dssp SSCCCC--C---------------------TT-STTCTTCCEEECTTSC---CCCC-GGGGGCTTCSEEECCSSC----C
T ss_pred CCCCCC--C---------------------hh-hccCCCCCEEEecCCC---CCCC-ccccCCCccCEEECCCCc----c
Confidence 777652 1 12 5566666666666652 1111 234444555555555443 1
Q ss_pred ceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecC
Q 048418 605 SKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSM 675 (798)
Q Consensus 605 ~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 675 (798)
..+ ..+.. +++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|
T Consensus 144 ~~l-~~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 144 TDI-TVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CCC-GGGGS-CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSE
T ss_pred CCc-hhhcc-cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCC
Confidence 111 12233 5666666666666543322 66666666666666655542 23455666666666665
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.1e-14 Score=157.57 Aligned_cols=248 Identities=14% Similarity=0.134 Sum_probs=177.8
Q ss_pred cccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCceeccCCcccCCCCCCCCCCCC
Q 048418 462 PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNFGSITLPAHPGKYCGSLE 540 (798)
Q Consensus 462 p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~ 540 (798)
|..++.+. -+.++.++++++++|..+ ..+|++|+|++|+++.+|. .+.++++|++|+|++|.+..
T Consensus 3 p~~~C~C~-~~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~---------- 68 (350)
T 4ay9_X 3 HHRICHCS-NRVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE---------- 68 (350)
T ss_dssp CCSSSEEE-TTEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC----------
T ss_pred CCCccEee-CCEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC----------
Confidence 33344443 367888999999999877 4689999999999999986 58999999999999998752
Q ss_pred CcceeecCCCCcchhhhcCCCCCCCeEEE-ecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeee-ecCCCCCCe
Q 048418 541 NLNFISALHPCCCTEDILGRLPNLRNLRI-WGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVL-VEYQFPPRL 618 (798)
Q Consensus 541 ~L~~l~~~~~~~~~~~~l~~l~~L~~L~l-~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l-~~~~~l~~L 618 (798)
..+..++.++++|+++.+ .++ ......+..+..+++|+.|++++|.+ +.+.. .+.. ..++
T Consensus 69 -----------~i~~~~f~~L~~l~~~l~~~~N--~l~~l~~~~f~~l~~L~~L~l~~n~l----~~~~~~~~~~-~~~l 130 (350)
T 4ay9_X 69 -----------VIEADVFSNLPKLHEIRIEKAN--NLLYINPEAFQNLPNLQYLLISNTGI----KHLPDVHKIH-SLQK 130 (350)
T ss_dssp -----------EECTTSBCSCTTCCEEEEEEET--TCCEECTTSBCCCTTCCEEEEEEECC----SSCCCCTTCC-BSSC
T ss_pred -----------ccChhHhhcchhhhhhhcccCC--cccccCchhhhhcccccccccccccc----ccCCchhhcc-cchh
Confidence 122222677788776444 444 22333356788999999999999773 22211 1222 4677
Q ss_pred eEEEEEec-cCCCCCccccccCc-ccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCccee-cCCcccccceee
Q 048418 619 THLSFSNT-ELMEDPMPALEKMP-LLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTM-GTGAMPKLEFLI 695 (798)
Q Consensus 619 ~~L~L~~~-~l~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~ 695 (798)
..|++.++ .+.......+..++ .++.|++++|.++. ++......++|+.|.+.++..++.+|. .+..+++|+.|+
T Consensus 131 ~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 131 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 88888775 44333344555554 68899999888864 444445567899999998878999986 468999999999
Q ss_pred EeeCCCCCCCCccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeecccc
Q 048418 696 INPCAYLKKMPEQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYES 752 (798)
Q Consensus 696 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n 752 (798)
+++|. ++.+|.. .+.+|+.|.+.+|.. +. ..+.+..+++|+.+++.++
T Consensus 209 Ls~N~-l~~lp~~--~~~~L~~L~~l~~~~-----l~-~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 209 ISRTR-IHSLPSY--GLENLKKLRARSTYN-----LK-KLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTSC-CCCCCSS--SCTTCCEEECTTCTT-----CC-CCCCTTTCCSCCEEECSCH
T ss_pred cCCCC-cCccChh--hhccchHhhhccCCC-----cC-cCCCchhCcChhhCcCCCC
Confidence 99996 6678864 467788888877741 12 4455778899999998764
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=1.2e-14 Score=167.94 Aligned_cols=83 Identities=23% Similarity=0.210 Sum_probs=56.8
Q ss_pred hccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceec
Q 048418 443 EMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLN 522 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 522 (798)
..+++|+.|++++|.+..+| .+..+++|++|+|++|.+..+|+ + +++++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 45666777777777766665 46667777777777777776665 4 67777777777777666665 466777777777
Q ss_pred cCCcccC
Q 048418 523 FGSITLP 529 (798)
Q Consensus 523 L~~~~i~ 529 (798)
|++|.+.
T Consensus 116 Ls~N~l~ 122 (605)
T 1m9s_A 116 LEHNGIS 122 (605)
T ss_dssp CTTSCCC
T ss_pred ecCCCCC
Confidence 7777664
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=6e-15 Score=155.28 Aligned_cols=187 Identities=19% Similarity=0.178 Sum_probs=119.6
Q ss_pred ceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCc
Q 048418 447 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSI 526 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 526 (798)
.+..+.+....+..+. .+..+++|++|++++|.+..+|. + ..+++|++|++++|.+..++. +.++++|++|++++|
T Consensus 25 ~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~-~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-I-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-G-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcccEEEccCCCcccChh-H-hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 3444456666555332 35678999999999999998875 5 899999999999999999987 999999999999999
Q ss_pred ccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCce
Q 048418 527 TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSK 606 (798)
Q Consensus 527 ~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~ 606 (798)
.+.. +.. +..+++|+.|++++|. ...+ ..+..+++|+.|++++
T Consensus 101 ~l~~-----------------------~~~-l~~l~~L~~L~L~~n~---i~~~-~~l~~l~~L~~L~l~~--------- 143 (291)
T 1h6t_A 101 KVKD-----------------------LSS-LKDLKKLKSLSLEHNG---ISDI-NGLVHLPQLESLYLGN--------- 143 (291)
T ss_dssp CCCC-----------------------GGG-GTTCTTCCEEECTTSC---CCCC-GGGGGCTTCCEEECCS---------
T ss_pred cCCC-----------------------Chh-hccCCCCCEEECCCCc---CCCC-hhhcCCCCCCEEEccC---------
Confidence 8752 234 7778888888888873 1112 2344445555555554
Q ss_pred eeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCC
Q 048418 607 IVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTG 686 (798)
Q Consensus 607 L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 686 (798)
|.+... +.++.+++|+.|++++|.+.+.. . +..+++|+.|++++| .++.++ .+.
T Consensus 144 -------------------n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N-~i~~l~-~l~ 197 (291)
T 1h6t_A 144 -------------------NKITDI--TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKN-HISDLR-ALA 197 (291)
T ss_dssp -------------------SCCCCC--GGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSS-CCCBCG-GGT
T ss_pred -------------------CcCCcc--hhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCC-cCCCCh-hhc
Confidence 444321 34455555555555555444421 1 444555555555554 334443 244
Q ss_pred cccccceeeEeeCC
Q 048418 687 AMPKLEFLIINPCA 700 (798)
Q Consensus 687 ~l~~L~~L~l~~c~ 700 (798)
.+++|+.|++++|+
T Consensus 198 ~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 198 GLKNLDVLELFSQE 211 (291)
T ss_dssp TCTTCSEEEEEEEE
T ss_pred cCCCCCEEECcCCc
Confidence 55555555555554
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=1.7e-14 Score=164.86 Aligned_cols=74 Identities=24% Similarity=0.268 Sum_probs=59.4
Q ss_pred ceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCc
Q 048418 447 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSI 526 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~ 526 (798)
+|+.|+|++|.++.+|..+. ++|++|+|++|.++.+| ..+++|++|++++|.+..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 78888888888888887664 78888888888888888 246888888888888888877 655 8888888888
Q ss_pred ccC
Q 048418 527 TLP 529 (798)
Q Consensus 527 ~i~ 529 (798)
.+.
T Consensus 131 ~l~ 133 (571)
T 3cvr_A 131 QLT 133 (571)
T ss_dssp CCS
T ss_pred cCC
Confidence 775
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=4.4e-14 Score=145.27 Aligned_cols=178 Identities=19% Similarity=0.188 Sum_probs=135.5
Q ss_pred CccceEEecCCCccccChhhhhCCCCCcEeeccccccccch-hhhcccccCceeccCCcccCCCCCCCCCCCCCcceeec
Q 048418 469 FLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA-DEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISA 547 (798)
Q Consensus 469 ~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~ 547 (798)
...++++++++.++.+|..+ . .+|+.|++++|.+..++ ..+.++++|++|++++|.+..
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----------------- 73 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-P--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT----------------- 73 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-C--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-----------------
T ss_pred CCCeEEecCCCCccccCCCC-C--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-----------------
Confidence 46788999999999999877 3 68999999999888875 468899999999999988752
Q ss_pred CCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEecc
Q 048418 548 LHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTE 627 (798)
Q Consensus 548 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~ 627 (798)
..+.. +..+++|+.|+++++. .. .+ ++. .+.. +++|++|++++|.
T Consensus 74 ----~~~~~-~~~l~~L~~L~L~~n~--l~-~~--------------------~~~------~~~~-l~~L~~L~L~~N~ 118 (251)
T 3m19_A 74 ----LSAGV-FDDLTELGTLGLANNQ--LA-SL--------------------PLG------VFDH-LTQLDKLYLGGNQ 118 (251)
T ss_dssp ----CCTTT-TTTCTTCCEEECTTSC--CC-CC--------------------CTT------TTTT-CTTCCEEECCSSC
T ss_pred ----cCHhH-hccCCcCCEEECCCCc--cc-cc--------------------Chh------Hhcc-cCCCCEEEcCCCc
Confidence 22223 6667777777777762 11 11 110 1223 7888888888888
Q ss_pred CCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce-ecCCcccccceeeEeeCCCCC
Q 048418 628 LMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGTGAMPKLEFLIINPCAYLK 703 (798)
Q Consensus 628 l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~ 703 (798)
++...+..+..+++|+.|+|++|.+... .+..+..+++|++|+|++|. +..++ ..+..+++|+.|++++|+...
T Consensus 119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 119 LKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8766666689999999999999988763 23457889999999999984 55554 467889999999999998543
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=1.6e-14 Score=149.66 Aligned_cols=171 Identities=17% Similarity=0.171 Sum_probs=120.1
Q ss_pred ccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceecc
Q 048418 444 MFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNF 523 (798)
Q Consensus 444 ~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L 523 (798)
.+..+..++++++.++.++ .+..+++|++|++++|.++.+| .+ +.+++|++|++++|.+..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 4666777888888888776 6788889999999998888887 55 888999999999998888877 888899999999
Q ss_pred CCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCC
Q 048418 524 GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPA 603 (798)
Q Consensus 524 ~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~ 603 (798)
++|.+.. +| . +.. ++|+.|++++|. ...+ ..+..+++|+.|++++|.
T Consensus 93 ~~N~l~~--l~---------------------~-~~~-~~L~~L~L~~N~---l~~~-~~l~~l~~L~~L~Ls~N~---- 139 (263)
T 1xeu_A 93 NRNRLKN--LN---------------------G-IPS-ACLSRLFLDNNE---LRDT-DSLIHLKNLEILSIRNNK---- 139 (263)
T ss_dssp CSSCCSC--CT---------------------T-CCC-SSCCEEECCSSC---CSBS-GGGTTCTTCCEEECTTSC----
T ss_pred CCCccCC--cC---------------------c-ccc-CcccEEEccCCc---cCCC-hhhcCcccccEEECCCCc----
Confidence 8888753 22 1 222 566777777663 1122 235566666666666655
Q ss_pred CceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCC
Q 048418 604 FSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGR 655 (798)
Q Consensus 604 L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 655 (798)
++.+. .+.. +++|++|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 140 i~~~~-~l~~-l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 140 LKSIV-MLGF-LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBCG-GGGG-CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCh-HHcc-CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 23222 2344 67777777777776543 5667777777777777766553
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=2.8e-14 Score=140.97 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=92.7
Q ss_pred hccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeecccccccc-chhhhcccccCcee
Q 048418 443 EMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDH-TADEFWKMNKLKHL 521 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L 521 (798)
..+++|+.|++++|.++.+| .+..+++|++|++++|.+..++ .+ .++++|++|++++|.+.. .|..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hh-hcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45666777777777776666 5666777777777777665554 34 667777777777776654 45556666677777
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCC
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKM 601 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~ 601 (798)
++++|.+. ...+.. ++.+++|+.|++++|. ....++ .
T Consensus 118 ~Ls~n~i~---------------------~~~~~~-l~~l~~L~~L~L~~n~--~i~~~~-~------------------ 154 (197)
T 4ezg_A 118 DISHSAHD---------------------DSILTK-INTLPKVNSIDLSYNG--AITDIM-P------------------ 154 (197)
T ss_dssp ECCSSBCB---------------------GGGHHH-HTTCSSCCEEECCSCT--BCCCCG-G------------------
T ss_pred EecCCccC---------------------cHhHHH-HhhCCCCCEEEccCCC--CccccH-h------------------
Confidence 66666654 223344 5566666666666651 111111 1
Q ss_pred CCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccC
Q 048418 602 PAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSG 654 (798)
Q Consensus 602 ~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 654 (798)
+.. +++|++|++++|.+.+ .+.+..+++|+.|++++|.+.+
T Consensus 155 ---------l~~-l~~L~~L~l~~n~i~~--~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 155 ---------LKT-LPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---------GGG-CSSCCEEECTTBCCCC--CTTGGGCSSCCEEEECBC----
T ss_pred ---------hcC-CCCCCEEECCCCCCcC--hHHhccCCCCCEEEeeCcccCC
Confidence 223 6677777777776654 2367777888888888776543
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.49 E-value=3.3e-14 Score=141.64 Aligned_cols=180 Identities=22% Similarity=0.250 Sum_probs=107.6
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceeccCCcc
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNFGSIT 527 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 527 (798)
+.++.+++.++.+|..+ .++|++|++++|.++.+|...|.++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46677777777777655 35888888888888888776657888888888888888777654 5678888888888877
Q ss_pred cCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCcee
Q 048418 528 LPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKI 607 (798)
Q Consensus 528 i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L 607 (798)
+.. + .... +..+++|+.|+++++. .. .++..
T Consensus 88 l~~--~-------------------~~~~-~~~l~~L~~L~L~~N~--l~-~~~~~------------------------ 118 (208)
T 2o6s_A 88 LQS--L-------------------PNGV-FDKLTQLKELALNTNQ--LQ-SLPDG------------------------ 118 (208)
T ss_dssp CCC--C-------------------CTTT-TTTCTTCCEEECCSSC--CC-CCCTT------------------------
T ss_pred CCc--c-------------------CHhH-hcCccCCCEEEcCCCc--Cc-ccCHh------------------------
Confidence 642 1 1111 4455555555555541 11 11000
Q ss_pred eeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCc
Q 048418 608 VLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGA 687 (798)
Q Consensus 608 ~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 687 (798)
.+.. +++|++|++++|.+++..+..+..+++|+.|++++|.+.. .+++|+.|+++.|.....+|..++.
T Consensus 119 --~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 119 --VFDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp --TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred --Hhcc-CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 0112 4555556666555554444445566666666666554332 3455666665555444455555554
Q ss_pred ccc
Q 048418 688 MPK 690 (798)
Q Consensus 688 l~~ 690 (798)
++.
T Consensus 188 l~~ 190 (208)
T 2o6s_A 188 VAP 190 (208)
T ss_dssp BCT
T ss_pred ccC
Confidence 443
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=5.2e-14 Score=138.97 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=117.9
Q ss_pred cccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcc
Q 048418 464 GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLN 543 (798)
Q Consensus 464 ~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~ 543 (798)
..+.+++|++|++++|.+..+| .+ ..+++|++|++++|.+..++ .+..+++|++|++++|.+.
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~-------------- 101 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVT-------------- 101 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCB--------------
T ss_pred ChhhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccC--------------
Confidence 3467889999999999999888 56 89999999999999777765 5888999999999988875
Q ss_pred eeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEE
Q 048418 544 FISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSF 623 (798)
Q Consensus 544 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L 623 (798)
...+.. ++.+++|+.|++++| ......+..+.. +++|++|++
T Consensus 102 -------~~~~~~-l~~l~~L~~L~Ls~n--~i~~~~~~~l~~----------------------------l~~L~~L~L 143 (197)
T 4ezg_A 102 -------SDKIPN-LSGLTSLTLLDISHS--AHDDSILTKINT----------------------------LPKVNSIDL 143 (197)
T ss_dssp -------GGGSCC-CTTCTTCCEEECCSS--BCBGGGHHHHTT----------------------------CSSCCEEEC
T ss_pred -------cccChh-hcCCCCCCEEEecCC--ccCcHhHHHHhh----------------------------CCCCCEEEc
Confidence 223444 778888888888888 344444555554 456666666
Q ss_pred EeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCC
Q 048418 624 SNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSML 676 (798)
Q Consensus 624 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 676 (798)
++|...... +.+..+++|+.|++++|.+++. + .+..+++|+.|++++|+
T Consensus 144 ~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~~--~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 144 SYNGAITDI-MPLKTLPELKSLNIQFDGVHDY--R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CSCTBCCCC-GGGGGCSSCCEEECTTBCCCCC--T-TGGGCSSCCEEEECBC-
T ss_pred cCCCCcccc-HhhcCCCCCCEEECCCCCCcCh--H-HhccCCCCCEEEeeCcc
Confidence 666522233 4789999999999999988762 2 56789999999999985
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=3.7e-14 Score=141.30 Aligned_cols=162 Identities=21% Similarity=0.245 Sum_probs=115.5
Q ss_pred cCceeEEEecCcccccCccc-ccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceec
Q 048418 445 FKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLN 522 (798)
Q Consensus 445 ~~~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~ 522 (798)
.++|++|++++|.++.+|.. +..+++|++|++++|.++.+|...|.++++|++|++++|.+..+|.. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45789999999998866654 68899999999999999988887668899999999999988888654 68899999999
Q ss_pred cCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCC
Q 048418 523 FGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMP 602 (798)
Q Consensus 523 L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~ 602 (798)
+++|.+.. + .... +..+++|+.|+++++. .....+..+..+++|+.|++++|.
T Consensus 107 L~~N~l~~--~-------------------~~~~-~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N~--- 159 (208)
T 2o6s_A 107 LNTNQLQS--L-------------------PDGV-FDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDNP--- 159 (208)
T ss_dssp CCSSCCCC--C-------------------CTTT-TTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSCC---
T ss_pred cCCCcCcc--c-------------------CHhH-hccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCCC---
Confidence 99988752 1 1122 5667778888887762 222222335556666666666644
Q ss_pred CCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcc
Q 048418 603 AFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPL 641 (798)
Q Consensus 603 ~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 641 (798)
+... +++|+.|+++.|.+++..+..++.++.
T Consensus 160 -------~~~~-~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 160 -------WDCT-CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -------BCCC-TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -------eecC-CCCHHHHHHHHHhCCceeeccCccccC
Confidence 2223 566666666666666666666655543
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=3.5e-13 Score=153.91 Aligned_cols=175 Identities=19% Similarity=0.188 Sum_probs=115.1
Q ss_pred ccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCC
Q 048418 470 LLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALH 549 (798)
Q Consensus 470 ~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~ 549 (798)
+|++|++++|.++.+|..+ . ++|++|+|++|.+..+| ..+++|++|++++|.+.. +|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip--------------- 116 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-P--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LP--------------- 116 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-C--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CC---------------
T ss_pred CccEEEeCCCCCCccCHhH-c--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cc---------------
Confidence 8999999999999999877 3 78999999999999998 568999999999998763 22
Q ss_pred CCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCC
Q 048418 550 PCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELM 629 (798)
Q Consensus 550 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~ 629 (798)
. +.+ +|+.|++++|. ...+|. . +++|+.|++++|.++
T Consensus 117 ------~-l~~--~L~~L~Ls~N~---l~~lp~---~----------------------------l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 117 ------E-LPA--SLKHLDVDNNQ---LTMLPE---L----------------------------PALLEYINADNNQLT 153 (571)
T ss_dssp ------C-CCT--TCCEEECCSSC---CSCCCC---C----------------------------CTTCCEEECCSSCCS
T ss_pred ------h-hhc--CCCEEECCCCc---CCCCCC---c----------------------------CccccEEeCCCCccC
Confidence 1 222 66777777662 111221 2 455666666666554
Q ss_pred CCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecCCccccc-------ceeeEeeCCCC
Q 048418 630 EDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGTGAMPKL-------EFLIINPCAYL 702 (798)
Q Consensus 630 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L-------~~L~l~~c~~l 702 (798)
+ .+. .+++|+.|++++|.+++ ++. +. ++|+.|+|++| .++.+|. +.. +| +.|++++|. +
T Consensus 154 ~-lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l 219 (571)
T 3cvr_A 154 M-LPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENR-I 219 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSC-C
T ss_pred c-CCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCc-c
Confidence 3 222 45566666666666555 232 22 66677777666 4555555 332 55 777777775 4
Q ss_pred CCCCccCCCCCCCCEEEEecCc
Q 048418 703 KKMPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 703 ~~lp~~l~~l~~L~~L~l~~c~ 724 (798)
..+|..+..+++|+.|+|++|+
T Consensus 220 ~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 220 THIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCCCGGGGGSCTTEEEECCSSS
T ss_pred eecCHHHhcCCCCCEEEeeCCc
Confidence 4577777777777777777776
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=2.2e-15 Score=173.05 Aligned_cols=81 Identities=26% Similarity=0.331 Sum_probs=38.4
Q ss_pred CCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcc--eecCCcccccc
Q 048418 615 PPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEW--TMGTGAMPKLE 692 (798)
Q Consensus 615 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~~~~~l~~L~ 692 (798)
+++|+.|++++|.++ ..|..++.+++|+.|+|++|.+++ ++ .++.+++|+.|+|++| .++.+ |..++.+++|+
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCC
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCC
Confidence 445555555555544 334445555555555555554443 22 3444455555555544 23333 44444444555
Q ss_pred eeeEeeCC
Q 048418 693 FLIINPCA 700 (798)
Q Consensus 693 ~L~l~~c~ 700 (798)
.|++++|+
T Consensus 537 ~L~L~~N~ 544 (567)
T 1dce_A 537 LLNLQGNS 544 (567)
T ss_dssp EEECTTSG
T ss_pred EEEecCCc
Confidence 55554444
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=2.7e-13 Score=140.35 Aligned_cols=151 Identities=18% Similarity=0.163 Sum_probs=117.7
Q ss_pred hhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCcee
Q 048418 442 CEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHL 521 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L 521 (798)
+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|. + +++++|++|++++|.+..+|.... ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRLKNLNGIPS--ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence 577899999999999998887 78889999999999999998887 5 999999999999999888876433 899999
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCC
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKM 601 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~ 601 (798)
++++|.+.. +.. +..+++|+.|++++|. ...++ .+..+++|+.|++++|.
T Consensus 112 ~L~~N~l~~-----------------------~~~-l~~l~~L~~L~Ls~N~---i~~~~-~l~~l~~L~~L~L~~N~-- 161 (263)
T 1xeu_A 112 FLDNNELRD-----------------------TDS-LIHLKNLEILSIRNNK---LKSIV-MLGFLSKLEVLDLHGNE-- 161 (263)
T ss_dssp ECCSSCCSB-----------------------SGG-GTTCTTCCEEECTTSC---CCBCG-GGGGCTTCCEEECTTSC--
T ss_pred EccCCccCC-----------------------Chh-hcCcccccEEECCCCc---CCCCh-HHccCCCCCEEECCCCc--
Confidence 999998752 123 6777788888887773 22232 56777888888888766
Q ss_pred CCCceeeeecCCCCCCeeEEEEEeccCCCC
Q 048418 602 PAFSKIVLVEYQFPPRLTHLSFSNTELMED 631 (798)
Q Consensus 602 ~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~ 631 (798)
++.+ ..+.. +++|+.|++++|.+...
T Consensus 162 --i~~~-~~l~~-l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 162 --ITNT-GGLTR-LKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --CCBC-TTSTT-CCCCCEEEEEEEEEECC
T ss_pred --Ccch-HHhcc-CCCCCEEeCCCCcccCC
Confidence 2222 13445 78999999999987654
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=1.3e-13 Score=149.75 Aligned_cols=174 Identities=20% Similarity=0.262 Sum_probs=119.7
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChhhhh-CCCCCcEeeccccccccch-hhhcccccCceeccCCc
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLS-NLPNLYTLDMPFSYIDHTA-DEFWKMNKLKHLNFGSI 526 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~-~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~ 526 (798)
++++++++.++.+|..+. .++++|+|++|.++.++...|. ++++|++|+|++|.+..++ ..+.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578888888888887665 4688889988888888877655 8888999999888888875 45888888889988888
Q ss_pred ccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCce
Q 048418 527 TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSK 606 (798)
Q Consensus 527 ~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~ 606 (798)
.+.. + .... +..+++|+.|++++|. .....+..+..+++|+.|++++|. ++.
T Consensus 99 ~l~~--~-------------------~~~~-~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~----l~~ 150 (361)
T 2xot_A 99 HLHT--L-------------------DEFL-FSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQ----ISR 150 (361)
T ss_dssp CCCE--E-------------------CTTT-TTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC----CCS
T ss_pred cCCc--C-------------------CHHH-hCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCc----CCe
Confidence 8752 1 1122 5566677777777662 222234456666777777777655 222
Q ss_pred eeeec----CCCCCCeeEEEEEeccCCCCCccccccCcc--cceEEEeecccc
Q 048418 607 IVLVE----YQFPPRLTHLSFSNTELMEDPMPALEKMPL--LQVLKLKQNSYS 653 (798)
Q Consensus 607 L~l~~----~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~--L~~L~L~~~~~~ 653 (798)
+...+ .. +++|+.|+|++|.+....+..+..++. |+.|+|.+|.+.
T Consensus 151 l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 151 FPVELIKDGNK-LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCGGGTC-----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred eCHHHhcCccc-CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 22211 23 678888888888876655566777776 377888777654
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=3.6e-15 Score=171.23 Aligned_cols=120 Identities=19% Similarity=0.152 Sum_probs=65.7
Q ss_pred CCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccc
Q 048418 564 LRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQ 643 (798)
Q Consensus 564 L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 643 (798)
|+.|++++| ....+|. ++.+++|+.|++++|. ++.++-.+.. +++|+.|+|++|.+++ . +.++.+++|+
T Consensus 443 L~~L~Ls~n---~l~~lp~-~~~l~~L~~L~Ls~N~----l~~lp~~~~~-l~~L~~L~Ls~N~l~~-l-p~l~~l~~L~ 511 (567)
T 1dce_A 443 VRVLHLAHK---DLTVLCH-LEQLLLVTHLDLSHNR----LRALPPALAA-LRCLEVLQASDNALEN-V-DGVANLPRLQ 511 (567)
T ss_dssp CSEEECTTS---CCSSCCC-GGGGTTCCEEECCSSC----CCCCCGGGGG-CTTCCEEECCSSCCCC-C-GGGTTCSSCC
T ss_pred ceEEEecCC---CCCCCcC-ccccccCcEeecCccc----ccccchhhhc-CCCCCEEECCCCCCCC-C-cccCCCCCCc
Confidence 555555555 2222333 5555566666665554 2222223344 6666666666666654 2 2666777777
Q ss_pred eEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcceecC----Ccccccceee
Q 048418 644 VLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTMGT----GAMPKLEFLI 695 (798)
Q Consensus 644 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~----~~l~~L~~L~ 695 (798)
.|+|++|.+++...+..++.+++|+.|+|++|+ +...|... ..+|+|+.|+
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 777776666653214555667777777777763 44333322 2366676664
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=7.5e-13 Score=133.06 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=66.4
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccc-hhhhcccccCceeccCCcc
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHLNFGSIT 527 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~ 527 (798)
+.++++++.++.+|..+. .+|++|++++|.++.+|...|.++++|+.|+|++|.+..+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578888888888887765 6899999999999988875558899999999999988877 6778888899999888887
Q ss_pred cC
Q 048418 528 LP 529 (798)
Q Consensus 528 i~ 529 (798)
+.
T Consensus 92 l~ 93 (220)
T 2v9t_B 92 IT 93 (220)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=9.4e-13 Score=132.33 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=101.1
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccC-hhhhhCCCCCcEeeccccccccchh-hhcccccCceeccCCc
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLP-PSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNFGSI 526 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp-~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~ 526 (798)
+.++++++.++.+|..+. ..+++|+|++|.++.++ ...|.++++|++|++++|.+..++. .+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 578999998888887764 35789999999998774 3444889999999999998888854 6888889999988888
Q ss_pred ccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCce
Q 048418 527 TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSK 606 (798)
Q Consensus 527 ~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~ 606 (798)
.+.. ..+.. +..+++|+.|++++|. .....+..+..
T Consensus 92 ~l~~---------------------~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~-------------------- 127 (220)
T 2v70_A 92 RLEN---------------------VQHKM-FKGLESLKTLMLRSNR--ITCVGNDSFIG-------------------- 127 (220)
T ss_dssp CCCC---------------------CCGGG-GTTCSSCCEEECTTSC--CCCBCTTSSTT--------------------
T ss_pred ccCc---------------------cCHhH-hcCCcCCCEEECCCCc--CCeECHhHcCC--------------------
Confidence 8752 22223 5666666666666652 11111222222
Q ss_pred eeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeecccc
Q 048418 607 IVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYS 653 (798)
Q Consensus 607 L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 653 (798)
+++|++|+|++|.++...+..+..+++|+.|++++|.+.
T Consensus 128 --------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 128 --------LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp --------CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred --------CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 455555666666555544555666666666666666554
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=1.5e-12 Score=131.62 Aligned_cols=80 Identities=23% Similarity=0.247 Sum_probs=62.5
Q ss_pred eeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceeccCCc
Q 048418 448 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNFGSI 526 (798)
Q Consensus 448 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 526 (798)
.+.++.+++.+..+|..+. ++|++|+|++|.++.+++..|.++++|++|+|++|.+..+|.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567888888888887665 7888888888888877554448888888888888888888644 578888888888888
Q ss_pred ccC
Q 048418 527 TLP 529 (798)
Q Consensus 527 ~i~ 529 (798)
.+.
T Consensus 99 ~l~ 101 (229)
T 3e6j_A 99 QLT 101 (229)
T ss_dssp CCC
T ss_pred cCC
Confidence 775
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=2.2e-12 Score=123.67 Aligned_cols=128 Identities=23% Similarity=0.174 Sum_probs=83.6
Q ss_pred cCceeEEEecCcccc--cCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeecccccccc-chhhhcccccCcee
Q 048418 445 FKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDH-TADEFWKMNKLKHL 521 (798)
Q Consensus 445 ~~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L 521 (798)
.+.|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+ +.+++|++|++++|.+.. +|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 466777777777776 7777777777788888877777766 444 777778888887777766 66666677778888
Q ss_pred ccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHH----HhccCCCCCCEEEEec
Q 048418 522 NFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLS----QSLCRLSCLESLKLVN 597 (798)
Q Consensus 522 ~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~----~~l~~l~~L~~L~l~~ 597 (798)
++++|.+.. ...+.. +..+++|+.|++++|. ...++ ..+..+++|+.|++++
T Consensus 101 ~Ls~N~l~~--------------------~~~~~~-l~~l~~L~~L~l~~N~---l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 101 NLSGNKLKD--------------------ISTLEP-LKKLECLKSLDLFNCE---VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ECBSSSCCS--------------------SGGGGG-GSSCSCCCEEECCSSG---GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred eccCCccCc--------------------chhHHH-HhcCCCCCEEEeeCCc---CcchHHHHHHHHHhCccCcEecCCC
Confidence 777777652 111233 6666677777776662 22222 2455555555555554
Q ss_pred C
Q 048418 598 E 598 (798)
Q Consensus 598 n 598 (798)
|
T Consensus 157 n 157 (168)
T 2ell_A 157 R 157 (168)
T ss_dssp T
T ss_pred C
Confidence 3
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=4.2e-12 Score=128.44 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=67.3
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCccc-ccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSG-IENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~-i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
.++++.|.+.++... .+.+..|..+++|++|+|++|.++.+|.. +..+++|++|+|++|.++.+|...|..+++|
T Consensus 39 ~~~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 39 PTNAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp CTTCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 445555555544432 12233445555555555555555544432 3455555555555555555554443555555
Q ss_pred cEeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecc
Q 048418 496 YTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 572 (798)
Q Consensus 496 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 572 (798)
++|++++|.+..+|..+..+++|++|++++|.+.. ..... +..+++|+.|++.+|
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~---------------------~~~~~-~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS---------------------IPHGA-FDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC---------------------CCTTT-TTTCTTCCEEECTTS
T ss_pred CeEeccCCcccccCcccccCCCCCEEECCCCcCCc---------------------cCHHH-HhCCCCCCEEEeeCC
Confidence 55555555555555555555555555555555431 11122 666677777777766
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=5.2e-12 Score=126.84 Aligned_cols=130 Identities=18% Similarity=0.224 Sum_probs=64.6
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
.++++.|.+.++... .+++..|..+++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+|..+|.++++|
T Consensus 31 ~~~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 31 PETITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp CTTCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 344555555444331 22223444455555555555555422 4445555555555555555555555444455555
Q ss_pred cEeeccccccccc-hhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecc
Q 048418 496 YTLDMPFSYIDHT-ADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 572 (798)
Q Consensus 496 ~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 572 (798)
++|+|++|.+..+ |..+..+++|++|++++|.+.. ..... +..+++|+.|++++|
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------~~~~~-~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT---------------------IAKGT-FSPLRAIQTMHLAQN 162 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---------------------CCTTT-TTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE---------------------ECHHH-HhCCCCCCEEEeCCC
Confidence 5555555554444 3344455555555555554431 11222 566677777777666
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=3.4e-13 Score=159.62 Aligned_cols=109 Identities=27% Similarity=0.249 Sum_probs=85.9
Q ss_pred hhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccc
Q 048418 437 DWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMN 516 (798)
Q Consensus 437 ~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~ 516 (798)
.++..|..++.|++|+|++|.+..+|..+..+++|++|+|++|.++.+|..+ ++|++|++|+|++|.+..+|..+++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 4556788899999999999999999988889999999999999999999888 999999999999999889999999999
Q ss_pred cCceeccCCcccCCCCCC-CCCCCCCcceeecC
Q 048418 517 KLKHLNFGSITLPAHPGK-YCGSLENLNFISAL 548 (798)
Q Consensus 517 ~L~~L~L~~~~i~~~~~p-~i~~L~~L~~l~~~ 548 (798)
+|++|+|++|.+. .+| .+++|.+|+.|+++
T Consensus 294 ~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 294 QLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp TCSEEECCSSCCC--CCCSSTTSCTTCCCEECT
T ss_pred CCCEEECCCCCCC--ccChhhhcCCCccEEeCC
Confidence 9999999999885 345 44444444444433
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=2.1e-12 Score=121.15 Aligned_cols=129 Identities=19% Similarity=0.135 Sum_probs=98.8
Q ss_pred hccCceeEEEecCcccc--cCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeecccccccc-chhhhcccccCc
Q 048418 443 EMFKLLRVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDH-TADEFWKMNKLK 519 (798)
Q Consensus 443 ~~~~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~ 519 (798)
...++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..+ +++++|++|++++|.+.. +|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 34578999999999987 8888888999999999999988877 555 889999999999998887 788788899999
Q ss_pred eeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHH---HhccCCCCCCEEEEe
Q 048418 520 HLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLS---QSLCRLSCLESLKLV 596 (798)
Q Consensus 520 ~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~---~~l~~l~~L~~L~l~ 596 (798)
+|++++|.+.. ...+.. ++.+++|+.|++++|. .....+ ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~--------------------~~~~~~-~~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKD--------------------LSTIEP-LKKLENLKSLDLFNCE--VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCS--------------------HHHHGG-GGGCTTCCEEECTTCG--GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCC--------------------hHHHHH-HhhCCCCCEEeCcCCc--ccchHHHHHHHHHHCCCcccccCC
Confidence 99999988752 112244 7778888888888873 222211 356677777777654
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=7e-12 Score=125.92 Aligned_cols=129 Identities=13% Similarity=0.189 Sum_probs=90.3
Q ss_pred CceeEEEecCcccccCc--ccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCceec
Q 048418 446 KLLRVLDLGSLVLIQYP--SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLN 522 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp--~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~ 522 (798)
+.+++|+|++|.++.++ ..+..+++|++|+|++|.++.+++..|.++++|++|+|++|.+..+|. .+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 35688999999988653 347889999999999999998887555899999999999998888854 488899999999
Q ss_pred cCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecC
Q 048418 523 FGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNE 598 (798)
Q Consensus 523 L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n 598 (798)
+++|.+.. ..+.. +..+++|+.|++++|. .....|..+..+++|+.|++++|
T Consensus 112 Ls~N~l~~---------------------~~~~~-~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 112 LRSNRITC---------------------VGNDS-FIGLSSVRLLSLYDNQ--ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTSCCCC---------------------BCTTS-STTCTTCSEEECTTSC--CCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCCcCCe---------------------ECHhH-cCCCccCCEEECCCCc--CCEECHHHhcCCCCCCEEEecCc
Confidence 99998862 12223 5566666666666652 22222334444444444444443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.24 E-value=1.2e-11 Score=118.47 Aligned_cols=132 Identities=21% Similarity=0.205 Sum_probs=106.9
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccc-cChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKS-LPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~~L~~L 495 (798)
+++++.|.+.++.... ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+ .++++|
T Consensus 23 ~~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTC
T ss_pred cccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCC
Confidence 7889999999876521 12344578899999999999999877 789999999999999999997 66655 889999
Q ss_pred cEeeccccccccch--hhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecc
Q 048418 496 YTLDMPFSYIDHTA--DEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 572 (798)
Q Consensus 496 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 572 (798)
++|++++|.+..+| ..+..+++|++|++++|.+.. +| ...... +..+++|+.|++++|
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~--~~----------------~~~~~~-~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN--LN----------------DYRESV-FKLLPQLTYLDGYDR 157 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT--ST----------------THHHHH-HTTCSSCCEETTEET
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc--hH----------------HHHHHH-HHhCccCcEecCCCC
Confidence 99999999999986 789999999999999998863 11 000123 777888888888777
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.23 E-value=5.6e-12 Score=136.89 Aligned_cols=174 Identities=21% Similarity=0.223 Sum_probs=123.9
Q ss_pred cceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hc-ccccCceeccCCcccCCCCCCCCCCCCCcceeecC
Q 048418 471 LRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FW-KMNKLKHLNFGSITLPAHPGKYCGSLENLNFISAL 548 (798)
Q Consensus 471 Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~-~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~ 548 (798)
-+.++++++.++.+|..+ ..+++.|+|++|.+..++.. +. ++++|++|+|++|.+..
T Consensus 20 ~~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~------------------ 78 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF------------------ 78 (361)
T ss_dssp TTEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE------------------
T ss_pred CCEEEeCCCCcCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc------------------
Confidence 468999999999999876 35689999999999998655 44 89999999999998852
Q ss_pred CCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeee-ecCCCCCCeeEEEEEecc
Q 048418 549 HPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVL-VEYQFPPRLTHLSFSNTE 627 (798)
Q Consensus 549 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~ 627 (798)
..+.. +..+++|+.|++++|. .....+..+..+++|+.|++++|. +..+.. .+.. +++|++|+|++|.
T Consensus 79 ---i~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~----i~~~~~~~~~~-l~~L~~L~L~~N~ 147 (361)
T 2xot_A 79 ---ISSEA-FVPVPNLRYLDLSSNH--LHTLDEFLFSDLQALEVLLLYNNH----IVVVDRNAFED-MAQLQKLYLSQNQ 147 (361)
T ss_dssp ---ECTTT-TTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC----CCEECTTTTTT-CTTCCEEECCSSC
T ss_pred ---cChhh-ccCCCCCCEEECCCCc--CCcCCHHHhCCCcCCCEEECCCCc----ccEECHHHhCC-cccCCEEECCCCc
Confidence 12233 7788899999999883 333333457788888888888876 333322 3444 7888888888888
Q ss_pred CCCCCcccc---ccCcccceEEEeeccccCCeeeeCCCCCcc--ccEEEeecCCC
Q 048418 628 LMEDPMPAL---EKMPLLQVLKLKQNSYSGRKLTCGSDGFPN--LKVLHLKSMLW 677 (798)
Q Consensus 628 l~~~~~~~l---~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~--L~~L~L~~~~~ 677 (798)
+.......+ ..+++|+.|+|++|.+.... ...+..++. |+.|+|.+|+.
T Consensus 148 l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCSCCGGGTC----CTTCCEEECCSSCCCCCC-HHHHHHSCHHHHTTEECCSSCE
T ss_pred CCeeCHHHhcCcccCCcCCEEECCCCCCCccC-HHHhhhccHhhcceEEecCCCc
Confidence 765444444 56888888888888776522 223344555 47788888753
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=2.9e-11 Score=129.43 Aligned_cols=281 Identities=14% Similarity=0.052 Sum_probs=165.4
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhc-cCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhC----
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEM-FKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSN---- 491 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~---- 491 (798)
..+++.|.+.+.-. ...+ ..+.. +++|++|||++|.+......-+.++.++++.+..+ .+|...|.+
T Consensus 24 ~~~l~~L~l~g~i~----~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLN----AEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEEC----HHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETT
T ss_pred hCceeEEEEecccc----HHHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccc
Confidence 45678888876532 1122 23344 78899999999987721111222333555655554 566666677
Q ss_pred ----CCCCcEeeccccccccchh-hhcccccCceeccCCcccCCCCCC--CCCCCCCcceeecCCCC-----c-chhhhc
Q 048418 492 ----LPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNFGSITLPAHPGK--YCGSLENLNFISALHPC-----C-CTEDIL 558 (798)
Q Consensus 492 ----L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~~~~i~~~~~p--~i~~L~~L~~l~~~~~~-----~-~~~~~l 558 (798)
+++|+.|+|.+ .+..++. .+..+++|+.|++++|.+.. ++ .+..+.++..+...... . ....++
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~--i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN--LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE--ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc--cchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 89999999988 7777754 57788999999888887642 33 44555555555443210 0 001113
Q ss_pred CCCCCCC-eEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeee-ecCCCCCCeeEEEEEeccCCCCCcccc
Q 048418 559 GRLPNLR-NLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPAL 636 (798)
Q Consensus 559 ~~l~~L~-~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l 636 (798)
..+.+|+ .+.+.... .....+...-....++..+.+.++ +..... .+...+++|++|+|++|.++......|
T Consensus 173 ~~~~~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~-----l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGK-----LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF 246 (329)
T ss_dssp EESCCCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEEC-----CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred ccccccceeEEecCCC-cHHHHHhhcccCccccceEEEeee-----ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence 4455565 44444332 111112222223455666666541 000000 000116788888888877765566678
Q ss_pred ccCcccceEEEeeccccCCeeeeCCCCCcccc-EEEeecCCCCCcce-ecCCcccccceeeEeeCCCCCCCC-ccCCCCC
Q 048418 637 EKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLK-VLHLKSMLWLEEWT-MGTGAMPKLEFLIINPCAYLKKMP-EQLWCIK 713 (798)
Q Consensus 637 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~ 713 (798)
.++++|+.|+|.+| +.. .....+.++++|+ .+.+.+ .++.++ ..+..|++|+.|++.++. +..++ ..+.+++
T Consensus 247 ~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGV 321 (329)
T ss_dssp TTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTC
T ss_pred hCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCc
Confidence 88888888888755 322 2344567788888 888876 466664 456778888888887665 33343 4677788
Q ss_pred CCCEEE
Q 048418 714 SLNKFD 719 (798)
Q Consensus 714 ~L~~L~ 719 (798)
+|+.|+
T Consensus 322 ~L~~ly 327 (329)
T 3sb4_A 322 PSKLIY 327 (329)
T ss_dssp CCCEEE
T ss_pred chhhhc
Confidence 888775
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=1.2e-11 Score=119.58 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=57.5
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
+++++.|.+.++.... + +.+....++|++|++++|.++.+ ..++.+++|++|++++|.++.+|+.+|+.+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~----i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV----I-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCS----C-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCch----h-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 5555666555554321 1 12222223566666666665544 3555566666666666666655554445566666
Q ss_pred Eeeccccccccchh--hhcccccCceeccCCccc
Q 048418 497 TLDMPFSYIDHTAD--EFWKMNKLKHLNFGSITL 528 (798)
Q Consensus 497 ~L~L~~~~l~~lp~--~i~~L~~L~~L~L~~~~i 528 (798)
+|++++|.+..+|. .+..+++|++|++++|.+
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i 125 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC
Confidence 66666665555554 555566666666665555
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=3e-12 Score=126.31 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=112.7
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCc
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLY 496 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~ 496 (798)
.-.++...+.+.... ...++..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+ ..+++|+
T Consensus 22 ~l~l~~~~l~~~~~~---l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~ 96 (198)
T 1ds9_A 22 ATEAEKVELHGMIPP---IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLE 96 (198)
T ss_dssp CTTCSEEECCBCCTT---CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCS
T ss_pred CcchheeEeccccCc---HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCC
Confidence 344556665554321 1233447889999999999999998888 8899999999999999999999877 8889999
Q ss_pred EeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchh
Q 048418 497 TLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYY 576 (798)
Q Consensus 497 ~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 576 (798)
+|++++|.+..+| .+..+++|++|++++|.+.. ...+.. +..+++|+.|++++|. .
T Consensus 97 ~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~--------------------~~~~~~-l~~l~~L~~L~l~~N~--l 152 (198)
T 1ds9_A 97 ELWISYNQIASLS-GIEKLVNLRVLYMSNNKITN--------------------WGEIDK-LAALDKLEDLLLAGNP--L 152 (198)
T ss_dssp EEEEEEEECCCHH-HHHHHHHSSEEEESEEECCC--------------------HHHHHH-HTTTTTCSEEEECSCH--H
T ss_pred EEECcCCcCCcCC-ccccCCCCCEEECCCCcCCc--------------------hhHHHH-HhcCCCCCEEEecCCc--c
Confidence 9999999998888 58899999999999998852 112234 8889999999999883 3
Q ss_pred hhhHHH----------hccCCCCCCEEE
Q 048418 577 QFLLSQ----------SLCRLSCLESLK 594 (798)
Q Consensus 577 ~~~l~~----------~l~~l~~L~~L~ 594 (798)
....|. .+..+++|+.|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC
Confidence 333222 256666666665
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=1e-12 Score=155.67 Aligned_cols=117 Identities=14% Similarity=0.129 Sum_probs=85.0
Q ss_pred cccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCceeccCCcccCCCCCCC
Q 048418 456 LVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKY 535 (798)
Q Consensus 456 ~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~ 535 (798)
+.+...|..+..+.+|+.|+|++|.+..+|..+ .++++|++|+|++|.+..+|..+++|++|++|+|++|.+..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~----- 284 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS----- 284 (727)
T ss_dssp -----------CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-----
T ss_pred cceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-----
Confidence 334445667888889999999999888898888 78999999999999888888888999999999999888752
Q ss_pred CCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCC
Q 048418 536 CGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNES 599 (798)
Q Consensus 536 i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~ 599 (798)
.+.. ++.|++|+.|++++| ....+|..++.+++|+.|+|++|.
T Consensus 285 -----------------lp~~-~~~l~~L~~L~L~~N---~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 285 -----------------LPAE-LGSCFQLKYFYFFDN---MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp -----------------CCSS-GGGGTTCSEEECCSS---CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred -----------------cChh-hcCCCCCCEEECCCC---CCCccChhhhcCCCccEEeCCCCc
Confidence 2334 677788888888887 334666667777777777777665
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=2.2e-11 Score=119.51 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=78.1
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChh-hhhCCCCCcEeeccccccccc-hhhhcccccCceeccCCc
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPS-LLSNLPNLYTLDMPFSYIDHT-ADEFWKMNKLKHLNFGSI 526 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~-i~~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~ 526 (798)
++++++++.++.+|..+.. +|++|++++|.++.++.. .|+++++|++|+|++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6889999988888887754 899999999999888764 338899999999999988887 677888999999999998
Q ss_pred ccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecc
Q 048418 527 TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGD 572 (798)
Q Consensus 527 ~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 572 (798)
.+.. ..+.. +..+++|+.|++++|
T Consensus 89 ~l~~---------------------~~~~~-~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 89 KIKE---------------------ISNKM-FLGLHQLKTLNLYDN 112 (192)
T ss_dssp CCCE---------------------ECSSS-STTCTTCCEEECCSS
T ss_pred cCCc---------------------cCHHH-hcCCCCCCEEECCCC
Confidence 8752 11222 556666777777666
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=9.1e-12 Score=116.70 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=92.9
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccCcCccceEEecCCCccc-cChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKS-LPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~-lp~~i~~~L~~L 495 (798)
.++++.|.+.++.... ...+..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+ +++++|
T Consensus 16 ~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTC
T ss_pred CccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCC
Confidence 6789999998876521 12334678899999999999999877 789999999999999999997 66655 889999
Q ss_pred cEeeccccccccch--hhhcccccCceeccCCcccC
Q 048418 496 YTLDMPFSYIDHTA--DEFWKMNKLKHLNFGSITLP 529 (798)
Q Consensus 496 ~~L~L~~~~l~~lp--~~i~~L~~L~~L~L~~~~i~ 529 (798)
++|++++|.+..+| ..++.+++|++|++++|.+.
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 99999999999875 78999999999999999886
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=9.1e-11 Score=115.08 Aligned_cols=78 Identities=24% Similarity=0.251 Sum_probs=59.0
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccch-hhhcccccCceeccCCcc
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA-DEFWKMNKLKHLNFGSIT 527 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 527 (798)
++++++++.++.+|..+. .+|++|++++|.++.+|..+ .++++|++|++++|.+..++ ..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 567778777777776654 57888888888888787666 78888888888888777775 457778888888888877
Q ss_pred cC
Q 048418 528 LP 529 (798)
Q Consensus 528 i~ 529 (798)
+.
T Consensus 90 l~ 91 (193)
T 2wfh_A 90 LR 91 (193)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.11 E-value=5e-11 Score=115.07 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=104.8
Q ss_pred hhccCceeEEEecCcccccCcccccCcC-ccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhh-cccccCc
Q 048418 442 CEMFKLLRVLDLGSLVLIQYPSGIENLF-LLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEF-WKMNKLK 519 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~~~i~~lp~~i~~L~-~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~ 519 (798)
+..++.|+.|++++|.++.+|. +..+. +|++|++++|.++.+ ..+ +++++|++|++++|.+..+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCC-CCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-ccc-ccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4667899999999999998865 55555 999999999999988 555 99999999999999999998655 8999999
Q ss_pred eeccCCcccCCCCCC---CCCCCCCcceeecCCCC--cchhh---hcCCCCCCCeEEEeccc
Q 048418 520 HLNFGSITLPAHPGK---YCGSLENLNFISALHPC--CCTED---ILGRLPNLRNLRIWGDL 573 (798)
Q Consensus 520 ~L~L~~~~i~~~~~p---~i~~L~~L~~l~~~~~~--~~~~~---~l~~l~~L~~L~l~~~~ 573 (798)
+|++++|.+.. +| .+..+++|+.+++.+.. ..+.. .+..+++|+.|+++.+.
T Consensus 92 ~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999964 44 57789999999998522 11221 27789999999999984
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.07 E-value=2.6e-10 Score=111.74 Aligned_cols=84 Identities=18% Similarity=0.248 Sum_probs=76.7
Q ss_pred CceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCceeccC
Q 048418 446 KLLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNFG 524 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L~ 524 (798)
+.|++|+|++|.++.+|..+..+++|++|+|++|.++.++...|.++++|++|+|++|.+..+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 57999999999999999999999999999999999999887766999999999999999988864 68899999999999
Q ss_pred CcccC
Q 048418 525 SITLP 529 (798)
Q Consensus 525 ~~~i~ 529 (798)
+|.+.
T Consensus 111 ~N~l~ 115 (193)
T 2wfh_A 111 GNDIS 115 (193)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 99886
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=4.1e-10 Score=108.69 Aligned_cols=80 Identities=28% Similarity=0.307 Sum_probs=51.4
Q ss_pred eeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceeccCCc
Q 048418 448 LRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNFGSI 526 (798)
Q Consensus 448 Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~ 526 (798)
.+.++++++.++.+|..+. ++|++|++++|.++.+|...|+++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3556666666666665443 5677777777776666665446667777777777766666543 466677777777666
Q ss_pred ccC
Q 048418 527 TLP 529 (798)
Q Consensus 527 ~i~ 529 (798)
.+.
T Consensus 87 ~l~ 89 (177)
T 2o6r_A 87 KLQ 89 (177)
T ss_dssp CCC
T ss_pred Ccc
Confidence 664
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.03 E-value=3.5e-10 Score=110.83 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=71.2
Q ss_pred ceeEEEecCcccccCccc--ccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCceecc
Q 048418 447 LLRVLDLGSLVLIQYPSG--IENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNF 523 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~lp~~--i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L 523 (798)
.|++|++++|.++.++.. ++.+++|++|+|++|.++.+++..|+++++|++|+|++|.+..++. .+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 789999999999877653 8899999999999999997754444999999999999999888854 4888999999999
Q ss_pred CCcccC
Q 048418 524 GSITLP 529 (798)
Q Consensus 524 ~~~~i~ 529 (798)
++|.+.
T Consensus 110 ~~N~l~ 115 (192)
T 1w8a_A 110 YDNQIS 115 (192)
T ss_dssp CSSCCC
T ss_pred CCCcCC
Confidence 999886
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=4.5e-09 Score=115.17 Aligned_cols=261 Identities=11% Similarity=0.042 Sum_probs=150.3
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcc-cccCcCccceEEecCCCccccChhhhhCCCCC
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNL 495 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L 495 (798)
+..+.++.+.+.-. .+....|.++ +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .++.++...|.++.+|
T Consensus 112 ~~~l~~i~ip~~i~-----~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPNSVK-----SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCTTCC-----EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECCccC-----EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 34445555443221 3334556664 5777777665 554443 3444 3688888775 6777777666788888
Q ss_pred cEeeccccccccchhhhcccccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccch
Q 048418 496 YTLDMPFSYIDHTADEFWKMNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSY 575 (798)
Q Consensus 496 ~~L~L~~~~l~~lp~~i~~L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 575 (798)
+.+++.++++..+|...-...+|+.+.+..+ +. .++ ..++..|++|+.+.+..+-
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~--~I~--------------------~~aF~~~~~L~~l~l~~~l-- 237 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK--EIG--------------------SQAFLKTSQLKTIEIPENV-- 237 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC--EEC--------------------TTTTTTCTTCCCEECCTTC--
T ss_pred CeeecCCCcceEechhhEeecccCEEEeCCc-hh--eeh--------------------hhHhhCCCCCCEEecCCCc--
Confidence 8888887777777665444677777766533 21 011 1125556666666655431
Q ss_pred hhhhHHHhccCCCCCCEEEEecCCCCCCCceeee-ecCCCCCCeeEEEEEeccCC-----CCCccccccCcccceEEEee
Q 048418 576 YQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVL-VEYQFPPRLTHLSFSNTELM-----EDPMPALEKMPLLQVLKLKQ 649 (798)
Q Consensus 576 ~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~ 649 (798)
...-...+.. .+|+.+.+.. +++.+.- .+.. +++|+.+.+.++... ......|.++++|+.+.|.
T Consensus 238 -~~I~~~aF~~-~~L~~i~lp~-----~i~~I~~~aF~~-c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~- 308 (401)
T 4fdw_A 238 -STIGQEAFRE-SGITTVKLPN-----GVTNIASRAFYY-CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP- 308 (401)
T ss_dssp -CEECTTTTTT-CCCSEEEEET-----TCCEECTTTTTT-CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred -cCcccccccc-CCccEEEeCC-----CccEEChhHhhC-CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence 1001122333 4667776632 2444322 3344 777777777776543 1234557778888888887
Q ss_pred ccccCCeeeeCCCCCccccEEEeecCCCCCcce-ecCCcccccceeeEeeCCCCCCCCccCCCCC-CCCEEEEecCc
Q 048418 650 NSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGTGAMPKLEFLIINPCAYLKKMPEQLWCIK-SLNKFDCWWPQ 724 (798)
Q Consensus 650 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~ 724 (798)
+.+.. .....+.++++|+.+.|.++ +..+. ..+..+ +|+.+.+.++......+..+..++ +++.|++....
T Consensus 309 ~~i~~-I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 309 ESIRI-LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTCCE-ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CceEE-EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 33332 22345667788888888653 55553 345666 888888887754332333455553 67788877654
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=1e-09 Score=105.95 Aligned_cols=101 Identities=24% Similarity=0.255 Sum_probs=61.6
Q ss_pred CceeEEEecCcccccCcc-cccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 523 (798)
+.|+.|++++|.++.+|. .++.+++|++|++++|.++.+|...|+++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 456666666666664443 345666666666666666666655446666666666666666666543 456666666666
Q ss_pred CCcccCCCCCC--CCCCCCCcceeecC
Q 048418 524 GSITLPAHPGK--YCGSLENLNFISAL 548 (798)
Q Consensus 524 ~~~~i~~~~~p--~i~~L~~L~~l~~~ 548 (798)
++|.+.. +| .+..+++|+.+++.
T Consensus 108 ~~N~l~~--~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 108 DTNQLKS--VPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp CSSCCSC--CCTTTTTTCTTCCEEECC
T ss_pred cCCcceE--eCHHHhcCCcccCEEEec
Confidence 6666642 44 34556666666665
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=4.5e-11 Score=117.84 Aligned_cols=128 Identities=20% Similarity=0.191 Sum_probs=93.6
Q ss_pred hhccCceeEEEecCcccc-------cCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcc
Q 048418 442 CEMFKLLRVLDLGSLVLI-------QYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWK 514 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~~~i~-------~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~ 514 (798)
+.....++.++++++.+. .+|..++.+++|++|++++|.++.+| .+ .++++|++|++++|.+..+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCCcccccchhhc
Confidence 344555555555555443 44558899999999999999999888 66 8999999999999999899988888
Q ss_pred cccCceeccCCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHH--HhccCCCCCCE
Q 048418 515 MNKLKHLNFGSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLS--QSLCRLSCLES 592 (798)
Q Consensus 515 L~~L~~L~L~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~L~~ 592 (798)
+++|++|++++|.+.. +.. +..+++|+.|++++|. ...++ ..+..+++|+.
T Consensus 92 ~~~L~~L~L~~N~l~~-----------------------l~~-~~~l~~L~~L~l~~N~---i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-----------------------LSG-IEKLVNLRVLYMSNNK---ITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HHHCSEEEEEEEECCC-----------------------HHH-HHHHHHSSEEEESEEE---CCCHHHHHHHTTTTTCSE
T ss_pred CCcCCEEECcCCcCCc-----------------------CCc-cccCCCCCEEECCCCc---CCchhHHHHHhcCCCCCE
Confidence 8999999999998752 224 6777888889888873 22222 34555555555
Q ss_pred EEEecC
Q 048418 593 LKLVNE 598 (798)
Q Consensus 593 L~l~~n 598 (798)
|++++|
T Consensus 145 L~l~~N 150 (198)
T 1ds9_A 145 LLLAGN 150 (198)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 555543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.92 E-value=2.1e-09 Score=103.42 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=63.4
Q ss_pred eEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceeccCCcc
Q 048418 449 RVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNFGSIT 527 (798)
Q Consensus 449 r~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~ 527 (798)
+.++++++.++.+|..+. .+|++|+|++|.++.+++..|+++++|++|+|++|.+..+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678888888888887765 7888888888888877655448888888888888888888765 4788888888888887
Q ss_pred cC
Q 048418 528 LP 529 (798)
Q Consensus 528 i~ 529 (798)
+.
T Consensus 93 l~ 94 (174)
T 2r9u_A 93 LK 94 (174)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=2e-09 Score=103.11 Aligned_cols=81 Identities=22% Similarity=0.281 Sum_probs=67.9
Q ss_pred ceeEEEecCcccccCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceeccCC
Q 048418 447 LLRVLDLGSLVLIQYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNFGS 525 (798)
Q Consensus 447 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~ 525 (798)
..+.|+++++.++.+|..+. .+|++|+|++|.++.+++..|.++++|++|+|++|.+..+|.. +..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35788999999888887774 7899999999999988665458999999999999988888765 57899999999999
Q ss_pred cccC
Q 048418 526 ITLP 529 (798)
Q Consensus 526 ~~i~ 529 (798)
|.+.
T Consensus 88 N~l~ 91 (170)
T 3g39_A 88 NQLK 91 (170)
T ss_dssp SCCC
T ss_pred CccC
Confidence 8885
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=2.7e-09 Score=102.58 Aligned_cols=84 Identities=19% Similarity=0.254 Sum_probs=77.8
Q ss_pred CceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhh-hcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L 523 (798)
+.|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|..+|.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 7899999999999966 66799999999999999999999998778999999999999999999875 889999999999
Q ss_pred CCcccC
Q 048418 524 GSITLP 529 (798)
Q Consensus 524 ~~~~i~ 529 (798)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 999885
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=3.7e-09 Score=113.01 Aligned_cols=261 Identities=13% Similarity=-0.022 Sum_probs=165.4
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcccccCcccccC--------cCccceEEecCCCccccChhh
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLVLIQYPSGIEN--------LFLLRYLKLNIPSLKSLPPSL 488 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~--------L~~Lr~L~L~~~~i~~lp~~i 488 (798)
.++|+.|.+.++.... .... ...++.++.+.+..+.+. +..|.. +.+|+.|.|.. .++.+++..
T Consensus 48 l~~L~~LdLs~n~i~~--~~~~---~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM--YSGK---AGTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECC--EEES---SSSSGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEE--ecCc---cccccccccccccccccC--HHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 5789999998775421 0000 112223455555555332 123555 89999999988 888898888
Q ss_pred hhCCCCCcEeeccccccccch-hhhcccccCceeccCCccc--CCCCCC--CCCCCCCcc-eeecCCCCcchhhh---cC
Q 048418 489 LSNLPNLYTLDMPFSYIDHTA-DEFWKMNKLKHLNFGSITL--PAHPGK--YCGSLENLN-FISALHPCCCTEDI---LG 559 (798)
Q Consensus 489 ~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~i--~~~~~p--~i~~L~~L~-~l~~~~~~~~~~~~---l~ 559 (798)
|.+|++|+.|+++++.+..++ ..+..+.++..+.++.+.. ....+. .+.++..|+ .+.+.......... -.
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 889999999999998777774 4566777777776554321 101111 222444444 33333222222221 12
Q ss_pred CCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeee-ecCCCCCCeeEEEEEeccCCCCCcccccc
Q 048418 560 RLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEK 638 (798)
Q Consensus 560 ~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 638 (798)
...++..+.+.+.- ...........+++|+.|++..|. ++.+.- .+.. +++|++|++.++ +.......|.+
T Consensus 200 ~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n~----i~~I~~~aF~~-~~~L~~l~l~~n-i~~I~~~aF~~ 271 (329)
T 3sb4_A 200 QPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKTN----ATTIPDFTFAQ-KKYLLKIKLPHN-LKTIGQRVFSN 271 (329)
T ss_dssp CGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTBC----CCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTT
T ss_pred CccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCCC----cceecHhhhhC-CCCCCEEECCcc-cceehHHHhhC
Confidence 35677888887762 222222222347899999998755 555443 3445 899999999887 55556677899
Q ss_pred Ccccc-eEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCccee-cCCcccccceeeE
Q 048418 639 MPLLQ-VLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTM-GTGAMPKLEFLII 696 (798)
Q Consensus 639 l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l 696 (798)
+++|+ .+.+.+ .+.. .....+.++++|+.|++.++ .+..++. .+..+++|+.+..
T Consensus 272 ~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 CGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEEC
T ss_pred ChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhcc
Confidence 99999 999984 4432 23456788999999999876 5666654 6778889988763
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.82 E-value=4.8e-09 Score=100.40 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=77.3
Q ss_pred CceeEEEecCcccccC-cccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchh-hhcccccCceecc
Q 048418 446 KLLRVLDLGSLVLIQY-PSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTAD-EFWKMNKLKHLNF 523 (798)
Q Consensus 446 ~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~L 523 (798)
+.|++|+|++|.++.+ |..+..+++|++|+|++|.++.+|+..|.++++|++|+|++|.+..+|. .+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 7899999999999966 6679999999999999999999999877899999999999999999976 4889999999999
Q ss_pred CCcccC
Q 048418 524 GSITLP 529 (798)
Q Consensus 524 ~~~~i~ 529 (798)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 999876
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=7.9e-09 Score=112.08 Aligned_cols=113 Identities=16% Similarity=0.045 Sum_probs=55.6
Q ss_pred CCCceEEEEecCCCCCCCchhhHHHhh-ccCceeEEEecCcccc-c-CcccccCcCccceEEecCCCccccChhhh----
Q 048418 417 DSHLHSLLYFTSESRHIDPIDWEKICE-MFKLLRVLDLGSLVLI-Q-YPSGIENLFLLRYLKLNIPSLKSLPPSLL---- 489 (798)
Q Consensus 417 ~~~LrsL~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~i~-~-lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~---- 489 (798)
.+++++|.+.++.........+...+. ..+.|+.|+|++|.++ . +......+.+|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 455666666655442100111112222 2256666666666654 1 21222234566666666666652221111
Q ss_pred -hCCCCCcEeecccccccc-----chhhhcccccCceeccCCcccC
Q 048418 490 -SNLPNLYTLDMPFSYIDH-----TADEFWKMNKLKHLNFGSITLP 529 (798)
Q Consensus 490 -~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~ 529 (798)
...++|++|+|++|.+.. ++..+..+++|++|+|++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 134566666666665533 3444555666666666666553
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.64 E-value=2.1e-07 Score=101.95 Aligned_cols=117 Identities=12% Similarity=0.028 Sum_probs=79.2
Q ss_pred CCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce-ecCCcccccce
Q 048418 615 PPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGTGAMPKLEF 693 (798)
Q Consensus 615 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~ 693 (798)
++.++.+......+. ...+..+.+|+.+.+.. .+.. .....+.++++|+.+.|.+ .++.+. ..+..|.+|+.
T Consensus 275 ~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~-~i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~ 347 (394)
T 4fs7_A 275 CSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLD-SVKF-IGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSN 347 (394)
T ss_dssp CTTCCEEEECSSEEC---TTTTTTCTTCCEEEECT-TCCE-ECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCE
T ss_pred ccccceeccCceeec---ccccccccccccccccc-ccce-echhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCE
Confidence 677777766554422 23567788999999873 3322 2234567889999999965 366663 45678899999
Q ss_pred eeEeeCCCCCCCC-ccCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEe
Q 048418 694 LIINPCAYLKKMP-EQLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHF 747 (798)
Q Consensus 694 L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l 747 (798)
+.+..+ ++.++ ..+.+|++|+.+++..+-. .....+.++++|+.+
T Consensus 348 i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~~-------~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 348 INFPLS--LRKIGANAFQGCINLKKVELPKRLE-------QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECCCTT--CCEECTTTBTTCTTCCEEEEEGGGG-------GGGGGBCTTCEEEEE
T ss_pred EEECcc--ccEehHHHhhCCCCCCEEEECCCCE-------EhhheecCCCCCcEE
Confidence 999654 44444 4688999999999976531 122346678888765
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=1.5e-07 Score=102.90 Aligned_cols=220 Identities=12% Similarity=0.143 Sum_probs=134.6
Q ss_pred HHHhhccCceeEEEecCcccccCc-ccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccch-hhhcccc
Q 048418 439 EKICEMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA-DEFWKMN 516 (798)
Q Consensus 439 ~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~ 516 (798)
...|.++ .|+.+.+.+ .++.++ ..|..|.+|+.+++++|.++.+|...|. ..+|+.+.+..+ +..++ ..+.+++
T Consensus 151 ~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~ 226 (401)
T 4fdw_A 151 DMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTS 226 (401)
T ss_dssp TTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCT
T ss_pred HHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCC
Confidence 3445553 477777765 444333 3466677777777777777777777644 567777777643 55553 3466677
Q ss_pred cCceeccCCcccCCCCCC--CCCCCCCcceeecCCCC-cchhhhcCCCCCCCeEEEecccch--hh-hhHHHhccCCCCC
Q 048418 517 KLKHLNFGSITLPAHPGK--YCGSLENLNFISALHPC-CCTEDILGRLPNLRNLRIWGDLSY--YQ-FLLSQSLCRLSCL 590 (798)
Q Consensus 517 ~L~~L~L~~~~i~~~~~p--~i~~L~~L~~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~--~~-~~l~~~l~~l~~L 590 (798)
+|+.+++..+ +. .++ .+.+ ..|+.+.+.... .....++..|++|+.+.+.++... .. ..-...+..|++|
T Consensus 227 ~L~~l~l~~~-l~--~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L 302 (401)
T 4fdw_A 227 QLKTIEIPEN-VS--TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL 302 (401)
T ss_dssp TCCCEECCTT-CC--EECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred CCCEEecCCC-cc--Ccccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence 7777766653 21 122 2333 456666654322 222334888999999998876311 00 1223467788889
Q ss_pred CEEEEecCCCCCCCceeee-ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCc-ccc
Q 048418 591 ESLKLVNESKMPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFP-NLK 668 (798)
Q Consensus 591 ~~L~l~~n~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~-~L~ 668 (798)
+.+.+.. +++.+.- .+.. +++|+.+.|..+ +.......|.++ +|+.+.+.+|..... ....+.+++ +++
T Consensus 303 ~~l~l~~-----~i~~I~~~aF~~-c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l-~~~~F~~~~~~l~ 373 (401)
T 4fdw_A 303 ARFEIPE-----SIRILGQGLLGG-NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV-FEKVWYGFPDDIT 373 (401)
T ss_dssp CEECCCT-----TCCEECTTTTTT-CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC-CCSSCCCSCTTCC
T ss_pred CeEEeCC-----ceEEEhhhhhcC-CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc-ccccccCCCCCcc
Confidence 9888752 3555543 3444 789999999654 444456678888 999999997765432 233455564 678
Q ss_pred EEEeecC
Q 048418 669 VLHLKSM 675 (798)
Q Consensus 669 ~L~L~~~ 675 (798)
.|.+-.+
T Consensus 374 ~l~vp~~ 380 (401)
T 4fdw_A 374 VIRVPAE 380 (401)
T ss_dssp EEEECGG
T ss_pred EEEeCHH
Confidence 8888654
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.61 E-value=2.4e-09 Score=116.16 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=46.5
Q ss_pred cCceeEEEecCcccc-c----CcccccC-cCccceEEecCCCccc-cChhhhhCCCCCcEeeccccccccc-----hhhh
Q 048418 445 FKLLRVLDLGSLVLI-Q----YPSGIEN-LFLLRYLKLNIPSLKS-LPPSLLSNLPNLYTLDMPFSYIDHT-----ADEF 512 (798)
Q Consensus 445 ~~~Lr~L~L~~~~i~-~----lp~~i~~-L~~Lr~L~L~~~~i~~-lp~~i~~~L~~L~~L~L~~~~l~~l-----p~~i 512 (798)
++.|+.|+|++|.++ . +...+.. ..+|++|+|++|.++. -...+...+.+|+.|+|++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456777777777765 1 2222221 2577777777777652 1222223455677777777765432 2222
Q ss_pred -cccccCceeccCCcccC
Q 048418 513 -WKMNKLKHLNFGSITLP 529 (798)
Q Consensus 513 -~~L~~L~~L~L~~~~i~ 529 (798)
...++|++|+|++|.++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLT 168 (372)
T ss_dssp HSTTCCCCEEECCSSCCH
T ss_pred HhcCCccceeeCCCCCCC
Confidence 23456667766666653
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.61 E-value=3.1e-07 Score=100.54 Aligned_cols=296 Identities=11% Similarity=0.033 Sum_probs=138.6
Q ss_pred HHHhhccCceeEEEecCcccccCc-ccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccch--------
Q 048418 439 EKICEMFKLLRVLDLGSLVLIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA-------- 509 (798)
Q Consensus 439 ~~~~~~~~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-------- 509 (798)
...|.++.+|+.+.|..+ ++.+. .+|.++.+|+.+++..+ ++.++...|.++.+|+.+.+..+ +..+.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 355677777777777543 55443 34666777777777543 66666666667777776665433 11111
Q ss_pred ---------------hhhcccccCceeccCCcccCCCCCC--CCCCCCCcceeecCCCCc-chhhhcCCCCCCCeEEEec
Q 048418 510 ---------------DEFWKMNKLKHLNFGSITLPAHPGK--YCGSLENLNFISALHPCC-CTEDILGRLPNLRNLRIWG 571 (798)
Q Consensus 510 ---------------~~i~~L~~L~~L~L~~~~i~~~~~p--~i~~L~~L~~l~~~~~~~-~~~~~l~~l~~L~~L~l~~ 571 (798)
..+.++.+|+.+.+..+.. .++ .+.++.+|+.+.+..... ....++.++..|+.+.+..
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~---~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSME---TLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC---EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCccc---eeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCC
Confidence 1233334444443332211 011 122333333333321111 1111133333333333222
Q ss_pred ccchhhhhHHHhccCCCCCCEEEEecCCCCCCCceeee-ecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeec
Q 048418 572 DLSYYQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVL-VEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQN 650 (798)
Q Consensus 572 ~~~~~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 650 (798)
... .+........+|+.+.+. .+++.+.- .+.. +.+|+.+.+..+. .......+..++.++.+.+...
T Consensus 218 ~~~----~i~~~~~~~~~l~~i~ip-----~~~~~i~~~~f~~-~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 218 SLY----YLGDFALSKTGVKNIIIP-----DSFTELGKSVFYG-CTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp TCC----EECTTTTTTCCCCEEEEC-----TTCCEECSSTTTT-CSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSS
T ss_pred Cce----EeehhhcccCCCceEEEC-----CCceecccccccc-cccceeEEcCCCc-ceeeccccccccccceeccCce
Confidence 110 000111122333333332 12222211 1222 5666666665543 1223344556666666665532
Q ss_pred cccCCeeeeCCCCCccccEEEeecCCCCCcce-ecCCcccccceeeEeeCCCCCCCC-ccCCCCCCCCEEEEecCcHHHH
Q 048418 651 SYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGTGAMPKLEFLIINPCAYLKKMP-EQLWCIKSLNKFDCWWPQPELR 728 (798)
Q Consensus 651 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~~~~ 728 (798)
.+. ...+..+.+|+.+.+.+ .++.+. ..+..+++|+.+.|.+. ++.++ ..+.+|++|+.+.+..+-
T Consensus 287 ~i~----~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~l---- 354 (394)
T 4fs7_A 287 IVP----EKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLSL---- 354 (394)
T ss_dssp EEC----TTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTTC----
T ss_pred eec----ccccccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECccc----
Confidence 211 22345567777777754 244443 23556777777777432 44443 356677777777775441
Q ss_pred HHHhc-CCCcccCCCceeEeeccccccccCCCCCCCccccc
Q 048418 729 QKLRE-FEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKL 768 (798)
Q Consensus 729 ~~l~~-~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L 768 (798)
.. ....+..|++|+.+++..+--. +...|.++++|
T Consensus 355 ---~~I~~~aF~~C~~L~~i~lp~~~~~--~~~~F~~c~~L 390 (394)
T 4fs7_A 355 ---RKIGANAFQGCINLKKVELPKRLEQ--YRYDFEDTTKF 390 (394)
T ss_dssp ---CEECTTTBTTCTTCCEEEEEGGGGG--GGGGBCTTCEE
T ss_pred ---cEehHHHhhCCCCCCEEEECCCCEE--hhheecCCCCC
Confidence 11 3344567777777777654221 12346666665
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=9.6e-08 Score=102.68 Aligned_cols=78 Identities=23% Similarity=0.144 Sum_probs=51.7
Q ss_pred EEecCc-ccccCcccccCcCccceEEecC-CCccccChhhhhCCCCCcEeeccccccccch-hhhcccccCceeccCCcc
Q 048418 451 LDLGSL-VLIQYPSGIENLFLLRYLKLNI-PSLKSLPPSLLSNLPNLYTLDMPFSYIDHTA-DEFWKMNKLKHLNFGSIT 527 (798)
Q Consensus 451 L~L~~~-~i~~lp~~i~~L~~Lr~L~L~~-~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~L~~~~ 527 (798)
++++++ .++.+|. |+.+.+|++|+|++ |.+..+|+..|++|++|+.|+|++|.+..+| ..+.+|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 466666 5666666 66677777777764 6677666544467777777777777666664 345667777777777776
Q ss_pred cC
Q 048418 528 LP 529 (798)
Q Consensus 528 i~ 529 (798)
+.
T Consensus 92 l~ 93 (347)
T 2ifg_A 92 LE 93 (347)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=7.3e-08 Score=103.63 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=78.2
Q ss_pred hhccCceeEEEecC-cccccCc-ccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccCc
Q 048418 442 CEMFKLLRVLDLGS-LVLIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKLK 519 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~-~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~ 519 (798)
+..+++|+.|+|++ |.++.+| ..|+.|++|++|+|++|.++.+|+..|++|++|+.|+|++|.+..+|..+....+|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 78899999999997 9999766 579999999999999999999888767999999999999999999987655544599
Q ss_pred eeccCCcccC
Q 048418 520 HLNFGSITLP 529 (798)
Q Consensus 520 ~L~L~~~~i~ 529 (798)
.|+|++|.+.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 9999999876
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.37 E-value=3e-06 Score=92.63 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=57.4
Q ss_pred CCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce-ecCCcccccce
Q 048418 615 PPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGTGAMPKLEF 693 (798)
Q Consensus 615 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~ 693 (798)
+.+|+.+.+.... .......+.++++|+.+.+. +.+.. .....+.++++|+.+.|.+ .++.+. ..+..|.+|+.
T Consensus 264 c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 264 CAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITE-LPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLER 338 (394)
T ss_dssp CSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCE
T ss_pred cccccEEeccccc-ceecCcccccccccccccCC-Ccccc-cCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCE
Confidence 5666666665432 12223445666777777665 32221 1233455667777777754 244443 34556677777
Q ss_pred eeEeeCCCCCCCC-ccCCCCCCCCEEEEecCc
Q 048418 694 LIINPCAYLKKMP-EQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 694 L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 724 (798)
+.|..+ ++.++ ..+.+|++|+.+++.++.
T Consensus 339 i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 339 IAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 777432 44443 346677777777777664
No 155
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.32 E-value=1.1e-06 Score=88.70 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=70.4
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccc--------------------ccc--
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYF--------------------DCH-- 215 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F--------------------~~~-- 215 (798)
..+++|++..++.+..++..+. ...++.|+|.+|+||||||+.+++.......+ +..
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 3569999999999999997653 23578899999999999999998742111000 000
Q ss_pred -----ce-------------------EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEeeecc
Q 048418 216 -----AW-------------------RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITLAQIE 256 (798)
Q Consensus 216 -----~w-------------------r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 256 (798)
.. +.+||+||++. ...++.+...+.....+.++|+||+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 101 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp ETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred cCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 00 48999999954 4677777776666566789999987653
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=1e-07 Score=102.52 Aligned_cols=160 Identities=20% Similarity=0.184 Sum_probs=91.0
Q ss_pred cCCCCCCCeEEEecccch---h----hhhHHHhccCCCCCCEEEEecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCC
Q 048418 558 LGRLPNLRNLRIWGDLSY---Y----QFLLSQSLCRLSCLESLKLVNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELME 630 (798)
Q Consensus 558 l~~l~~L~~L~l~~~~~~---~----~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~ 630 (798)
+.++++|+.|.|...... . ...+...+..+++|+.|+++++. ...+.. .. +++|++|+|..|.+..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~-~l~l~~-----~~-~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN-NLSIGK-----KP-RPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB-TCBCCS-----CB-CTTCSEEEEECSBCCH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC-Cceecc-----cc-CCCCcEEEEecCCCCh
Confidence 334566777766543100 0 12345556677888888887732 011111 12 6788888888887655
Q ss_pred CCccccc--cCcccceEEEee--ccccCCe-e-----eeCCCCCccccEEEeecCCCCCcce---ecCCcccccceeeEe
Q 048418 631 DPMPALE--KMPLLQVLKLKQ--NSYSGRK-L-----TCGSDGFPNLKVLHLKSMLWLEEWT---MGTGAMPKLEFLIIN 697 (798)
Q Consensus 631 ~~~~~l~--~l~~L~~L~L~~--~~~~~~~-~-----~~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~l~~L~~L~l~ 697 (798)
.....+. .+|+|+.|+|+. +...+.. + ......||+|++|.|.+|......+ .....+|+|++|+|+
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 4444444 688888888863 2221110 0 1112357888888888765432211 112457788888887
Q ss_pred eCCCCC----CCCccCCCCCCCCEEEEecCc
Q 048418 698 PCAYLK----KMPEQLWCIKSLNKFDCWWPQ 724 (798)
Q Consensus 698 ~c~~l~----~lp~~l~~l~~L~~L~l~~c~ 724 (798)
.|.... .++.++.++++|+.|++++|.
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 665322 134445567778888887775
No 157
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.29 E-value=1.3e-06 Score=86.77 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=67.9
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccc---ccccc-ccc------------------
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNY---VKHYF-DCH------------------ 215 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~------------------ 215 (798)
..+++|++..++++.+++.... ...+.|+|.+|+||||+|+.+++... ....| ...
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 3568999999999999997754 33388999999999999999987310 00000 000
Q ss_pred -------ceEEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeeecc
Q 048418 216 -------AWRYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQIE 256 (798)
Q Consensus 216 -------~wr~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~ 256 (798)
.-+.+||+||++.. ..++.+...+.....+.++|+||+...
T Consensus 94 ~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 94 RTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp TSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 00679999999764 456666665555556788999987653
No 158
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.23 E-value=9.3e-07 Score=97.28 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=37.6
Q ss_pred CCceeecHhHHHHHHHHH-hc---C-CCCeEEEEE--ecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLL-IE---G-PPQLSVVAI--LDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L-~~---~-~~~~~vi~i--~G~gGiGKTtLa~~v~~~ 205 (798)
+..++||+.+.+++.+++ .. + ......+.| +|++|+||||||+.+++.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 468999999999999998 42 2 012344555 999999999999999874
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=1.5e-06 Score=93.28 Aligned_cols=187 Identities=16% Similarity=0.129 Sum_probs=105.2
Q ss_pred hhccCceeEEEecCcccc----------cCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccc-hh
Q 048418 442 CEMFKLLRVLDLGSLVLI----------QYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHT-AD 510 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~~~i~----------~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~l-p~ 510 (798)
..++++|+.|.+.+.... .++..+..+++|+.|+|+++.-..++. + . +++|++|+|..|.+..- ..
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-P-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-B-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-c-CCCCcEEEEecCCCChHHHH
Confidence 456778888877654221 244455677888888888873234554 4 3 78888888887765322 12
Q ss_pred hhc--ccccCceeccCCc--ccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEecccchhhhhHHHhc--
Q 048418 511 EFW--KMNKLKHLNFGSI--TLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDLSYYQFLLSQSL-- 584 (798)
Q Consensus 511 ~i~--~L~~L~~L~L~~~--~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l-- 584 (798)
.+. .+++|++|+|+.+ .... -+.+.. |.. .-. ...+++|+.|++.+|. .....+..+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~--~~~~~~---l~~---------~l~-~~~~p~Lr~L~L~~~~--i~~~~~~~la~ 274 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGF--DGDMNV---FRP---------LFS-KDRFPNLKWLGIVDAE--EQNVVVEMFLE 274 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTC--CSCGGG---TGG---------GSC-TTTCTTCCEEEEESCT--THHHHHHHHHH
T ss_pred HHHHccCCCCcEEEEecccccccc--chhHHH---HHH---------HHh-cCCCCCcCEEeCCCCC--CchHHHHHHHh
Confidence 233 6888999887532 1110 000000 000 000 2357899999998884 322222222
Q ss_pred -cCCCCCCEEEEecCCCCC-CCceeeeecCCCCCCeeEEEEEeccCCCCCcccccc-CcccceEEEeecc
Q 048418 585 -CRLSCLESLKLVNESKMP-AFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEK-MPLLQVLKLKQNS 651 (798)
Q Consensus 585 -~~l~~L~~L~l~~n~i~~-~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~~~ 651 (798)
..+++|+.|+|+.|.+-. ..+.+...+.. +++|+.|++++|.++......+.. + ...++++.+.
T Consensus 275 a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 275 SDILPQLETMDISAGVLTDEGARLLLDHVDK-IKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSSGGGCSEEECCSSCCBHHHHHHHHTTHHH-HTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CccCCCCCEEECCCCCCChHHHHHHHhhccc-CCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 357889999998766300 00001101223 689999999999876544444443 2 2456666544
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=2.4e-06 Score=80.87 Aligned_cols=34 Identities=9% Similarity=0.257 Sum_probs=18.2
Q ss_pred CeeEEEEEeccCCCCCccccccCcccceEEEeec
Q 048418 617 RLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQN 650 (798)
Q Consensus 617 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 650 (798)
+|++|++++|.++...+..+..+++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4556666655555444444555555555555544
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=3.8e-06 Score=81.26 Aligned_cols=119 Identities=12% Similarity=0.073 Sum_probs=83.1
Q ss_pred hhhHHHhhccCceeEEEecCc-ccc-----cCcccccCcCccceEEecCCCccc-----cChhhhhCCCCCcEeeccccc
Q 048418 436 IDWEKICEMFKLLRVLDLGSL-VLI-----QYPSGIENLFLLRYLKLNIPSLKS-----LPPSLLSNLPNLYTLDMPFSY 504 (798)
Q Consensus 436 ~~~~~~~~~~~~Lr~L~L~~~-~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----lp~~i~~~L~~L~~L~L~~~~ 504 (798)
..+...+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.. +...+ ...++|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCc
Confidence 344566778888999999998 765 355566777889999999988762 44445 667888999998887
Q ss_pred ccc-----chhhhcccccCceecc--CCcccCCCCCCCCCCCCCcceeecCCCCcchhhhcCCCCCCCeEEEeccc
Q 048418 505 IDH-----TADEFWKMNKLKHLNF--GSITLPAHPGKYCGSLENLNFISALHPCCCTEDILGRLPNLRNLRIWGDL 573 (798)
Q Consensus 505 l~~-----lp~~i~~L~~L~~L~L--~~~~i~~~~~p~i~~L~~L~~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 573 (798)
+.. +...+...++|++|++ ++|.+... ....+..++...++|++|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~------------------g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNN------------------VEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH------------------HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH------------------HHHHHHHHHHhCCCcCEEeccCCC
Confidence 654 5666777788888888 77777520 001122225566778888888774
No 162
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.95 E-value=3.8e-06 Score=90.20 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=37.3
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
....++||+.+.+++.+ +.. +++.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999 643 59999999999999999998763
No 163
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.94 E-value=6.1e-06 Score=89.65 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=40.8
Q ss_pred CCceeecHhHHHHHHHHHhcC--CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+..++||+.+++++.+++... ......+.|+|++|+||||||+.+++.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999998742 334678899999999999999999873
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.93 E-value=5.8e-05 Score=82.38 Aligned_cols=280 Identities=11% Similarity=0.018 Sum_probs=152.2
Q ss_pred CceEEEEecCCCCCCCchhhHHHhhccCceeEEEecCcc---cccCc-ccccCcCccceEEecCCCccccChhhhhCCCC
Q 048418 419 HLHSLLYFTSESRHIDPIDWEKICEMFKLLRVLDLGSLV---LIQYP-SGIENLFLLRYLKLNIPSLKSLPPSLLSNLPN 494 (798)
Q Consensus 419 ~LrsL~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~---i~~lp-~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~ 494 (798)
.|+++.+...- ..+-...|.+|.+|+.+.+..+. ++.+. ..|..+.+|+.+.+.. .++.++...|..+.+
T Consensus 65 ~L~sI~iP~sv-----t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDTV-----TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTTC-----CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTT
T ss_pred cCEEEEECCCe-----eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhcc
Confidence 47777775432 24455678888888888887653 44443 3466777788777655 366676666678888
Q ss_pred CcEeeccccccccc-hhhhcccccCceeccCCcccCCCCCC--CCCCCCCcceeecCCCCc-chhhhcCCCCCCCeEEEe
Q 048418 495 LYTLDMPFSYIDHT-ADEFWKMNKLKHLNFGSITLPAHPGK--YCGSLENLNFISALHPCC-CTEDILGRLPNLRNLRIW 570 (798)
Q Consensus 495 L~~L~L~~~~l~~l-p~~i~~L~~L~~L~L~~~~i~~~~~p--~i~~L~~L~~l~~~~~~~-~~~~~l~~l~~L~~L~l~ 570 (798)
|+.+.+..+ +..+ ...+..+.+|+.+.+..+-. .+. .+ .-..|..+.+..... .-..++..+.++......
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~---~I~~~aF-~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVT---AIEERAF-TGTALTQIHIPAKVTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC---EECTTTT-TTCCCSEEEECTTCCEECTTTTTTCTTCCEEEEC
T ss_pred cccccccce-eeeecccceecccccccccccceee---Eeccccc-cccceeEEEECCcccccccchhhhccccceeccc
Confidence 888888644 3333 23455677777776554311 011 11 122344444432111 111114445555444332
Q ss_pred cccch----------------------------------hhhhHHHhccCCCCCCEEEEecCCCCCCCceeee-ecCCCC
Q 048418 571 GDLSY----------------------------------YQFLLSQSLCRLSCLESLKLVNESKMPAFSKIVL-VEYQFP 615 (798)
Q Consensus 571 ~~~~~----------------------------------~~~~l~~~l~~l~~L~~L~l~~n~i~~~L~~L~l-~~~~~l 615 (798)
..... ....-...+..+..|+.+.+. .++..+.- .+.. +
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp-----~~~~~I~~~aF~~-c 287 (394)
T 4gt6_A 214 SESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMP-----DSVVSIGTGAFMN-C 287 (394)
T ss_dssp CSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECC-----TTCCEECTTTTTT-C
T ss_pred ccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecc-----cccceecCccccc-c
Confidence 21100 000001123344444444432 22222211 2334 7
Q ss_pred CCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCcce-ecCCccccccee
Q 048418 616 PRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWT-MGTGAMPKLEFL 694 (798)
Q Consensus 616 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L 694 (798)
++|+.+.+... +.......|.++++|+.+.|.. .++. .-...+.++.+|+.+.|.. .++.+. ..+.+|++|+.+
T Consensus 288 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~-I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 288 PALQDIEFSSR-ITELPESVFAGCISLKSIDIPE-GITQ-ILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNI 362 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCE-ECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEE
T ss_pred cccccccCCCc-ccccCceeecCCCCcCEEEeCC-cccE-ehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEE
Confidence 88998888643 3334455788999999999973 3322 2244577899999999965 366663 457789999999
Q ss_pred eEeeCCCCCCCCccCCCCCCCCEEEEecC
Q 048418 695 IINPCAYLKKMPEQLWCIKSLNKFDCWWP 723 (798)
Q Consensus 695 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 723 (798)
.+.++...- ..+..+.+|+.+.+..+
T Consensus 363 ~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 363 EYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp EESSCHHHH---HTCBCCCCC--------
T ss_pred EECCceeeh---hhhhccCCCCEEEeCCC
Confidence 998764221 34566788888887655
No 165
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=4.4e-06 Score=80.76 Aligned_cols=112 Identities=10% Similarity=0.014 Sum_probs=87.2
Q ss_pred CCCceEEEEecC-CCCCCCchhhHHHhhccCceeEEEecCcccc-----cCcccccCcCccceEEecCCCccc-----cC
Q 048418 417 DSHLHSLLYFTS-ESRHIDPIDWEKICEMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLKS-----LP 485 (798)
Q Consensus 417 ~~~LrsL~~~~~-~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----lp 485 (798)
.+.|++|.+.++ .........+...+...+.|++|+|++|.+. .+...+...++|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 678999999887 5432122334556677899999999999986 355566777899999999999883 55
Q ss_pred hhhhhCCCCCcEeec--ccccccc-----chhhhcccccCceeccCCcccC
Q 048418 486 PSLLSNLPNLYTLDM--PFSYIDH-----TADEFWKMNKLKHLNFGSITLP 529 (798)
Q Consensus 486 ~~i~~~L~~L~~L~L--~~~~l~~-----lp~~i~~L~~L~~L~L~~~~i~ 529 (798)
..+ ...++|++|+| ++|.+.. +...+...++|++|++++|.+.
T Consensus 115 ~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 666 78889999999 7787654 5667778899999999998774
No 166
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.84 E-value=1.3e-05 Score=87.13 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=40.1
Q ss_pred CceeecHhHHHHHHHHHhc--CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIE--GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~--~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++||+.+++++.+++.. .....+.+.|+|++|+||||||+.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999988864 2334678999999999999999999873
No 167
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=2.2e-05 Score=83.22 Aligned_cols=97 Identities=16% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccc---ccc---cc-----------------
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVK---HYF---DC----------------- 214 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~---~~F---~~----------------- 214 (798)
..+++|++..++.+.+++..+. ...+-++|.+|+||||+|+.+++...-. ..| ++
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFA 101 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHH
Confidence 3569999999999999997764 3348899999999999999998631000 000 00
Q ss_pred --c-c---eEEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeeecc
Q 048418 215 --H-A---WRYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQIE 256 (798)
Q Consensus 215 --~-~---wr~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~ 256 (798)
. . -+.++|+||++.- ..++.+...+.....++++|+||....
T Consensus 102 ~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 102 RTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp HSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred hhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 0 0 0578999999754 566677666655556788999887653
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.80 E-value=1.9e-05 Score=76.21 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=39.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...++|+++.++++.+.+.... .+.+-|+|.+|+||||+|+.+.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999997643 456789999999999999999874
No 169
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.79 E-value=1.9e-05 Score=85.76 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=40.7
Q ss_pred CCceeecHhHHHHHHHHHhcC--CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+..++||+.+++++..++... ....+.+.|+|++|+||||+|+.+++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999998542 334678899999999999999999874
No 170
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=2.4e-05 Score=82.75 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc-----c--c--------------ccc---cc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN-----Y--V--------------KHY---FD 213 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~-----~--~--------------~~~---F~ 213 (798)
..+++|++..++.+.+++..+. .+.+.++|++|+||||+|+.+++.. . + +.. |.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFA 97 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHH
Confidence 3568999999999999997754 3338899999999999999987631 0 0 000 00
Q ss_pred --ccc----eEEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 214 --CHA----WRYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 214 --~~~----wr~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
... -+.+||+||++.- ..++.+...+.....++++|+||+..
T Consensus 98 ~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 98 QKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp HBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred hccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 000 1578999999763 45555555554445578888888654
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.74 E-value=0.00053 Score=74.17 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=82.8
Q ss_pred CCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecCCCCCccee-cCCcccccce
Q 048418 615 PPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSMLWLEEWTM-GTGAMPKLEF 693 (798)
Q Consensus 615 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~ 693 (798)
+.+|+.+.+..+- .......+.++..|+.+.+..+ ++. .-...+.++.+|+.+.+.. .+..++. .+..+++|+.
T Consensus 216 ~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~-I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 216 GKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTS-IGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp CSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCE-ECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCE
T ss_pred ccccceeeeccce-eEEccccccCCccceEEEcCCC-ccE-eCccccceeehhccccccc--cceecccccccccccccc
Confidence 5666666664431 2223345566777888777632 221 1133455677788887754 3454432 4567788888
Q ss_pred eeEeeCCCCCCC-CccCCCCCCCCEEEEecCcHHHHHHHhc-CCCcccCCCceeEeeccccccccCCCCCCCcccccc
Q 048418 694 LIINPCAYLKKM-PEQLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQSIPPLAHFMEYESQITETEPPSLPSQRKLK 769 (798)
Q Consensus 694 L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~~~~~~l~~-~~~~i~~l~~L~~l~l~~n~l~~~~p~~l~~l~~L~ 769 (798)
+.+.++. ++.+ +..+.+|++|+.+.|...- .. ....+.++.+|+.+.+..+ ++......|.+++.++
T Consensus 291 i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~l-------~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 291 VVMDNSA-IETLEPRVFMDCVKLSSVTLPTAL-------KTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTTC-------CEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred ccccccc-cceehhhhhcCCCCCCEEEcCccc-------cEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 8887654 3333 3457778888888885431 11 3345667788888877654 4444456676665553
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.70 E-value=5.1e-05 Score=82.49 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=39.8
Q ss_pred CCceeecHhHHHHHHHHHhc----CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~----~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+..++||+.+++++.+++.. +.+..+.+.|+|.+|+||||||+.+.+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 36799999999999999865 2223448999999999999999999864
No 173
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=4.1e-05 Score=77.96 Aligned_cols=80 Identities=24% Similarity=0.128 Sum_probs=62.5
Q ss_pred HhhccCceeEEEecCccccc---CcccccCcCccceEEecCCCccccChhhhhCCC--CCcEeecccccccc-ch-----
Q 048418 441 ICEMFKLLRVLDLGSLVLIQ---YPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLP--NLYTLDMPFSYIDH-TA----- 509 (798)
Q Consensus 441 ~~~~~~~Lr~L~L~~~~i~~---lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~--~L~~L~L~~~~l~~-lp----- 509 (798)
...+++.|+.|+|++|.++. +|..+..+++|++|+|++|.++.+ ..+ ..+. +|++|+|++|.+.. +|
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCccccCcchhH
Confidence 34678999999999999874 446677899999999999999876 333 5555 99999999997653 33
Q ss_pred --hhhcccccCceec
Q 048418 510 --DEFWKMNKLKHLN 522 (798)
Q Consensus 510 --~~i~~L~~L~~L~ 522 (798)
..+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 3467889999884
No 174
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=3.8e-05 Score=72.61 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=11.4
Q ss_pred chhhhcCCCCCCCeEEEeccc
Q 048418 553 CTEDILGRLPNLRNLRIWGDL 573 (798)
Q Consensus 553 ~~~~~l~~l~~L~~L~l~~~~ 573 (798)
.+.. +.++++|+.|++++|.
T Consensus 131 Gl~~-L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIA-LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHH-GGGCTTCCEEEEESCT
T ss_pred HHHH-HhcCCCCCEEECCCCC
Confidence 3344 5556666666666663
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.60 E-value=5.7e-05 Score=78.33 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=39.4
Q ss_pred CCCceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+++|.+..++++.+.+... -...+-+-|+|.+|+||||||+.+.+.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999998887431 123556889999999999999999874
No 176
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.57 E-value=4.7e-05 Score=73.05 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=53.3
Q ss_pred cHhHHHHHHHHHhcCC-CCeEEEEEecCCCChHHHHHHHHhccccccccccccce-------------------------
Q 048418 164 LDDRMEELLDLLIEGP-PQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW------------------------- 217 (798)
Q Consensus 164 ~~~~~~~i~~~L~~~~-~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w------------------------- 217 (798)
.....+.+.+++..-. ..-..+.|+|.+|+||||||+.+++.......+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV 98 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh
Confidence 3344455555554322 23578999999999999999999874211112111111
Q ss_pred --EEEEEEECCCC--hhhHH--HHhhhcCC-CCCCcEEEEEeeec
Q 048418 218 --RYLIVFDNVWR--ISAWD--VIRKILPD-NQNGSRVLITLAQI 255 (798)
Q Consensus 218 --r~LivlDdvw~--~~~~~--~l~~~~~~-~~~gs~ilvTtR~~ 255 (798)
.-+|||||++. .+.|. .+...+.. ...|..||+||...
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45899999984 33443 22222221 12467888888754
No 177
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.47 E-value=8.2e-05 Score=68.58 Aligned_cols=95 Identities=8% Similarity=-0.014 Sum_probs=59.2
Q ss_pred ceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc-cccccc--cccce--------------EEEEE
Q 048418 160 DMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN-YVKHYF--DCHAW--------------RYLIV 222 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~-~~~~~F--~~~~w--------------r~Liv 222 (798)
+++|....++++.+.+..-...-.-|-|+|..|+|||++|+.+++.. +-...| ++... .-.|+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~g~l~ 81 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGTLV 81 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHHHHHHTTSCEE
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcHHHHcCCcEEE
Confidence 57899999999998885421122335799999999999999999742 111122 11110 34789
Q ss_pred EECCCCh--hhHHHHhhhcCCCCCCcEEEEEeee
Q 048418 223 FDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQ 254 (798)
Q Consensus 223 lDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~ 254 (798)
+|++..- .....+...+.......+||.||..
T Consensus 82 ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 82 LSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp EECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred EcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 9999754 3444555444433445677777764
No 178
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.42 E-value=2.7e-05 Score=79.35 Aligned_cols=62 Identities=27% Similarity=0.271 Sum_probs=49.2
Q ss_pred cCcCccceEEecCCCccccC---hhhhhCCCCCcEeeccccccccchhhhcccc--cCceeccCCcccC
Q 048418 466 ENLFLLRYLKLNIPSLKSLP---PSLLSNLPNLYTLDMPFSYIDHTADEFWKMN--KLKHLNFGSITLP 529 (798)
Q Consensus 466 ~~L~~Lr~L~L~~~~i~~lp---~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~--~L~~L~L~~~~i~ 529 (798)
.++++|+.|+|++|.++.++ ..+ .++++|+.|+|++|.+..+. .+..+. +|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 46789999999999988654 455 78999999999999887773 355555 8999999988875
No 179
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.39 E-value=0.00013 Score=76.50 Aligned_cols=96 Identities=10% Similarity=0.107 Sum_probs=61.7
Q ss_pred ceeecHhHHHHHHHHHhc-------------CCCCeEEEEEecCCCChHHHHHHHHhccccccc-----cc---cc----
Q 048418 160 DMVGLDDRMEELLDLLIE-------------GPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKH-----YF---DC---- 214 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~~-------------~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~-----~F---~~---- 214 (798)
+++|.+..++.+.+++.. .......+-|+|.+|+||||+|+.+.+.-.-.. .| ++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 588999999888877642 123355788999999999999987766311000 11 00
Q ss_pred -cc---------------eEEEEEEECCC-----------ChhhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 215 -HA---------------WRYLIVFDNVW-----------RISAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 215 -~~---------------wr~LivlDdvw-----------~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
.. ..-+|++|++. .....+.+...+.....+..||+||...
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 00 03489999997 3344555655555555567888887643
No 180
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.38 E-value=0.00033 Score=75.52 Aligned_cols=96 Identities=17% Similarity=0.182 Sum_probs=65.6
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccc--------------------ccccc---
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKH--------------------YFDCH--- 215 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~--- 215 (798)
.+++|++..++.+.+.+..+. ....+-|+|..|+||||+|+.+.+...-.. +.+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 469999999999999997653 234678999999999999999876321100 00100
Q ss_pred ----ce-------------------EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 216 ----AW-------------------RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 216 ----~w-------------------r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
.. +.+||+||+.. ...++.+...+.....+..+|++|...
T Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 95 AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp TTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred ccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 00 46899999964 355667766665555567788777644
No 181
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.33 E-value=0.00022 Score=75.05 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=65.7
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc---cccccc---cc-----------------
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN---YVKHYF---DC----------------- 214 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~---~~~~~F---~~----------------- 214 (798)
-.+++|++..++.+.+++..+. ...+-++|.+|+||||+|+.+.+.. .....| ++
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHH
Confidence 3568999999999998887643 3338899999999999999987631 000000 00
Q ss_pred --c----ceEEEEEEECCCCh--hhHHHHhhhcCCCCCCcEEEEEeeecc
Q 048418 215 --H----AWRYLIVFDNVWRI--SAWDVIRKILPDNQNGSRVLITLAQIE 256 (798)
Q Consensus 215 --~----~wr~LivlDdvw~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~ 256 (798)
. .-+-++|+||+..- ...+.+...+.....+.++|+||....
T Consensus 94 ~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 94 RTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp HSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred hcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 0 00578999998653 455666666665556788888886543
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.30 E-value=0.00042 Score=73.14 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=39.0
Q ss_pred CCCceeecHhHHHHHHHHHhc----------CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIE----------GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+++|.+..++++.+++.. .....+-|-++|.+|+|||+||+.+.+.
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 346799999999999988731 1123466889999999999999999883
No 183
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.28 E-value=0.00012 Score=71.58 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCC--CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 167 RMEELLDLLIEGPP--QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 167 ~~~~i~~~L~~~~~--~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+.+.+++..... ....+.|+|.+|+||||||+.+++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44555566654322 1267889999999999999999884
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.28 E-value=0.00016 Score=72.66 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=31.8
Q ss_pred Cceeec---HhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGL---DDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~---~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|. +...+.+..+...+ ..+.+.|+|.+|+||||||+.+.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456653 34455555555543 3567889999999999999999873
No 185
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.25 E-value=0.00047 Score=70.27 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCCceeecHhHHHHHHHHHh---cCC-------CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLI---EGP-------PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~---~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+++|.+..++++.+++. ..+ ...+-|-++|.+|+||||+|+.+.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34678999998888876653 211 23456779999999999999999873
No 186
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.19 E-value=0.00023 Score=75.88 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.....++||+.+.+++.+++..+ +++.|+|++|+|||||++++.+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHH
Confidence 34567999999999999998753 6899999999999999999875
No 187
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.18 E-value=0.00013 Score=67.13 Aligned_cols=94 Identities=12% Similarity=0.054 Sum_probs=56.7
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccc---cccce-------------EEEEE
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYF---DCHAW-------------RYLIV 222 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~w-------------r~Liv 222 (798)
.+++|.+..++++.+.+..-.....-|-|+|..|+|||++|+.+++... .| ++... .-.++
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 80 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVEYLIDMPMELLQKAEGGVLY 80 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTTHHHHCHHHHHHHTTTSEEE
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC---CeEEechhhCChHhhhhHHHhCCCCeEE
Confidence 4678999999988888754111122366899999999999999988432 11 11110 34788
Q ss_pred EECCCCh--hhHHHHhhhcCCC-CCCcEEEEEeeec
Q 048418 223 FDNVWRI--SAWDVIRKILPDN-QNGSRVLITLAQI 255 (798)
Q Consensus 223 lDdvw~~--~~~~~l~~~~~~~-~~gs~ilvTtR~~ 255 (798)
||++... +....+...+... ..+.+||+||...
T Consensus 81 lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 81 VGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred EeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 9999764 3334444333322 3456788877643
No 188
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.15 E-value=0.0089 Score=64.37 Aligned_cols=291 Identities=9% Similarity=-0.002 Sum_probs=155.4
Q ss_pred HHhhccCceeEEEecCcccccCcc-cccCcCccceEEecCCCccccChhhhhCCCCCcEeeccccccccchhhhcccccC
Q 048418 440 KICEMFKLLRVLDLGSLVLIQYPS-GIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYIDHTADEFWKMNKL 518 (798)
Q Consensus 440 ~~~~~~~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l~~lp~~i~~L~~L 518 (798)
.++....+|+.+.+... ++.+++ +|.++.+|+.+.|.. .++.++...|.++ +|+.+.+..+ +..++...-...+|
T Consensus 40 ~~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L 115 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDL 115 (379)
T ss_dssp TTGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCC
T ss_pred cccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccCCc
Confidence 44666778888888643 555543 478888999999865 4778888776666 6777766543 44454333333467
Q ss_pred ceeccCCcccCCCCCC--CCCCCCCcceeecCCCCc-chhhhcCCCCCCCeEEEecccchhhhhHHHhccCCCCCCEEEE
Q 048418 519 KHLNFGSITLPAHPGK--YCGSLENLNFISALHPCC-CTEDILGRLPNLRNLRIWGDLSYYQFLLSQSLCRLSCLESLKL 595 (798)
Q Consensus 519 ~~L~L~~~~i~~~~~p--~i~~L~~L~~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l 595 (798)
+.+.+..+... +. .+.+. .|..+.+..... ....++..+.+++.+.+......... .....
T Consensus 116 ~~i~lp~~~~~---i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~---~~~~~--------- 179 (379)
T 4h09_A 116 DDFEFPGATTE---IGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVA---ENYVL--------- 179 (379)
T ss_dssp SEEECCTTCCE---ECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEE---ETTEE---------
T ss_pred ccccCCCcccc---ccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeec---cccee---------
Confidence 77755443111 11 11111 122222211100 00011233334443333322100000 00000
Q ss_pred ecCCCCCCCceeeeecCCCCCCeeEEEEEeccCCCCCccccccCcccceEEEeeccccCCeeeeCCCCCccccEEEeecC
Q 048418 596 VNESKMPAFSKIVLVEYQFPPRLTHLSFSNTELMEDPMPALEKMPLLQVLKLKQNSYSGRKLTCGSDGFPNLKVLHLKSM 675 (798)
Q Consensus 596 ~~n~i~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 675 (798)
..........+.. ...+..+.+.... .......+..+.+|+.+.+..+ +.. .....+.++.+|+.+.+..+
T Consensus 180 -----~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~-i~~~~f~~~~~L~~i~lp~~ 250 (379)
T 4h09_A 180 -----YNKNKTILESYPA-AKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTT-LGDGAFYGMKALDEIAIPKN 250 (379)
T ss_dssp -----EETTSSEEEECCT-TCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCE-ECTTTTTTCSSCCEEEECTT
T ss_pred -----cccccceeccccc-cccccccccccce-eEEeecccccccccceeeeccc-eeE-EccccccCCccceEEEcCCC
Confidence 0001111112222 4445554443332 1122344566778888887632 221 12334567889999998763
Q ss_pred CCCCcce-ecCCcccccceeeEeeCCCCCCCCc-cCCCCCCCCEEEEecCcHHHHHHHhcCCCcccCCCceeEeeccccc
Q 048418 676 LWLEEWT-MGTGAMPKLEFLIINPCAYLKKMPE-QLWCIKSLNKFDCWWPQPELRQKLREFEDKEQSIPPLAHFMEYESQ 753 (798)
Q Consensus 676 ~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~~~~~~l~~~~~~i~~l~~L~~l~l~~n~ 753 (798)
++.+. ..+..+.+|+.+.+... +..++. .+.+|++|+.+.+.++... .-....+.++.+|+.+.+..+
T Consensus 251 --v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~-----~I~~~aF~~c~~L~~i~lp~~- 320 (379)
T 4h09_A 251 --VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIE-----TLEPRVFMDCVKLSSVTLPTA- 320 (379)
T ss_dssp --CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCC-----EECTTTTTTCTTCCEEECCTT-
T ss_pred --ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccc-----eehhhhhcCCCCCCEEEcCcc-
Confidence 55553 34567889999998643 444443 5778999999999876311 113456778999999999755
Q ss_pred cccCCCCCCCcccccc
Q 048418 754 ITETEPPSLPSQRKLK 769 (798)
Q Consensus 754 l~~~~p~~l~~l~~L~ 769 (798)
+.......|.++++|+
T Consensus 321 l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 321 LKTIQVYAFKNCKALS 336 (379)
T ss_dssp CCEECTTTTTTCTTCC
T ss_pred ccEEHHHHhhCCCCCC
Confidence 5555567788888773
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.07 E-value=0.00084 Score=70.87 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=65.6
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccccccccc---c------------------cc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYF---D------------------CH 215 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F---~------------------~~ 215 (798)
.-.+++|.+..++.+.+++..+. ...++-+.|..|+||||+|+.+.+.. ...| + ..
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l--~~~~~~i~~~~~~~~~i~~~~~~~~~~~ 100 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDV--NADMMFVNGSDCKIDFVRGPLTNFASAA 100 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHT--TEEEEEEETTTCCHHHHHTHHHHHHHBC
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHh--CCCEEEEcccccCHHHHHHHHHHHHhhc
Confidence 34679999999999999998653 24677788999999999999998732 1110 0 00
Q ss_pred c---eEEEEEEECCCChh---hHHHHhhhcCCCCCCcEEEEEeeecc
Q 048418 216 A---WRYLIVFDNVWRIS---AWDVIRKILPDNQNGSRVLITLAQIE 256 (798)
Q Consensus 216 ~---wr~LivlDdvw~~~---~~~~l~~~~~~~~~gs~ilvTtR~~~ 256 (798)
. -+-+|++||+..-. ..+.+...+.....+.++|+||....
T Consensus 101 ~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 101 SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 0 06789999997643 44555544433334578888877543
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.03 E-value=0.0017 Score=68.44 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=38.5
Q ss_pred CCCceeecHhHHHHHHHHHhc---------C-CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIE---------G-PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~---------~-~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+++|.+..++.+.+.+.. + ....+-|-++|.+|+|||+||+.+.+.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 346799999999988887632 1 123467889999999999999999973
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.02 E-value=0.00037 Score=74.51 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=38.9
Q ss_pred CCCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+++|+++.++.+..++..+. ...+.++|.+|+||||+|+.+.+.
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999987654 223889999999999999998774
No 192
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.01 E-value=0.00062 Score=72.39 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=54.8
Q ss_pred CCceeecHhHHHHHHHHHhcC---CCCeEEEEEecCCCChHHHHHHHHhcccccccccc---ccce--------------
Q 048418 158 NRDMVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFD---CHAW-------------- 217 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~w-------------- 217 (798)
..+++|++..++++..++... ......|-|+|.+|+||||+|+.+.+. ....|- +...
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSANIKTTAAPMIEKSGDLAAILTNLS 105 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCEEEEEGGGCCSHHHHHHHHHTCC
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCeEEecchhccchhHHHHHHHhcc
Confidence 467999999999999988642 334566889999999999999999873 222221 1111
Q ss_pred -EEEEEEECCCCh--hhHHHHhhh
Q 048418 218 -RYLIVFDNVWRI--SAWDVIRKI 238 (798)
Q Consensus 218 -r~LivlDdvw~~--~~~~~l~~~ 238 (798)
.-+|+||++... ...+.+...
T Consensus 106 ~~~vl~lDEi~~l~~~~~~~Ll~~ 129 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPAIEEVLYPA 129 (338)
T ss_dssp TTCEEEEETGGGCCHHHHHHHHHH
T ss_pred CCCEEEEechhhcCHHHHHHHHHH
Confidence 568999999754 334444433
No 193
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.99 E-value=0.00032 Score=74.02 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=38.0
Q ss_pred CCceeecHhHHHHHHHHHhcC---CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+++|++..++++..++... ......+.|+|.+|+||||+|+.+++
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 467999999999988887531 22345678999999999999999987
No 194
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.98 E-value=0.00048 Score=65.85 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=38.8
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...++|++..++++.+.+.... ...+-|+|.+|+||||||+.+.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999997643 455689999999999999999873
No 195
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.96 E-value=0.00077 Score=72.21 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=38.7
Q ss_pred CCceeecHhHHHHHHHHHhc----------CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIE----------GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++++.+.+.. .....+-|-|+|..|+||||||+.+.+.
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999888742 1123567889999999999999999873
No 196
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.95 E-value=0.0012 Score=67.88 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=35.5
Q ss_pred CceeecHhHHHHHHH-------HHhcC-CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLD-------LLIEG-PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~-------~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++|.+...++++. .+... .....-+-|+|.+|+||||||+.+.+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 467888877777766 33222 345778889999999999999999873
No 197
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.88 E-value=0.00089 Score=73.76 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=38.1
Q ss_pred CCceeecHhHH---HHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRM---EELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~---~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..+ ..+...+..+. +..+-++|.+|+||||+|+.+.+.
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH
Confidence 46789998888 67777776654 577889999999999999999983
No 198
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.82 E-value=0.0015 Score=69.83 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=37.5
Q ss_pred CCceeecHhHHHHHHHHHhcC----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++.+.+.+... ....+-|-++|.+|+|||+||+.+.+.
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999998877321 122345789999999999999999883
No 199
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.77 E-value=0.001 Score=73.34 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=54.5
Q ss_pred cee-ecHh--HHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccccccccc-cc-ce-----------------
Q 048418 160 DMV-GLDD--RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFD-CH-AW----------------- 217 (798)
Q Consensus 160 ~~v-G~~~--~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~-~~-~w----------------- 217 (798)
.+| |... ....+..+...+.. ...+.|+|.+|+||||||+.+++. +...|. .. ++
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~~~~~~~~~~~~~~ 182 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSEKFLNDLVDSMKEG 182 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHHHHHHHHHHHHHTT
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHHHHHHHHHHHHHcc
Confidence 444 6433 33444444444332 667889999999999999999883 322111 00 00
Q ss_pred ------------EEEEEEECCCChh----hHHHHhhhcCC-CCCCcEEEEEeeec
Q 048418 218 ------------RYLIVFDNVWRIS----AWDVIRKILPD-NQNGSRVLITLAQI 255 (798)
Q Consensus 218 ------------r~LivlDdvw~~~----~~~~l~~~~~~-~~~gs~ilvTtR~~ 255 (798)
.-+|++||+.... .-+.+...+.. ...|..||+||...
T Consensus 183 ~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 183 KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3589999996532 23334333321 23477899988753
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.75 E-value=0.0027 Score=70.04 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=39.2
Q ss_pred CCCCceeecHhHHHHHHHHHhc----C------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIE----G------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~----~------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-.+++|.+..++.+.+.+.. + ....+-|-++|.+|+|||+||+.+++.
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446799999999999887731 0 123467889999999999999999973
No 201
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.71 E-value=0.0014 Score=69.11 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...+..++..+......+.|+|.+|+||||||+.+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44455555444334567889999999999999999873
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.71 E-value=0.0022 Score=69.63 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=39.0
Q ss_pred CCCceeecHhHHHHHHHHHhcC----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+++|.+..++.+.+++... ....+-|-|+|..|+|||+||+.+.+.
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999887321 112467889999999999999999873
No 203
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.68 E-value=0.0038 Score=66.99 Aligned_cols=48 Identities=27% Similarity=0.276 Sum_probs=37.3
Q ss_pred CCceeecHhHHHH---HHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEE---LLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~---i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++++|++..++. +.+.+..+....+.+-|+|.+|+||||+|+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999998776 45555554433468889999999999999999874
No 204
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.57 E-value=0.0024 Score=68.19 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=35.4
Q ss_pred CceeecHhHHHHHHHHH-hcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLL-IEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L-~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|.+...+.+.+++ ..+. ... +.|+|..|+||||+|+.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 56889999988888887 4433 223 89999999999999998766
No 205
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.50 E-value=0.0013 Score=67.24 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=35.6
Q ss_pred CCceeecHhHHHHHHHHHhc----------CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIE----------GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++++.+.+.. +....+-+-++|.+|+||||||+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 45799999888888776541 1111233679999999999999999874
No 206
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.43 E-value=0.003 Score=65.84 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=36.3
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++|....+.++.+.+..-.....-|-|+|..|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 4588999999999988865222234466999999999999999987
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.40 E-value=0.0023 Score=66.45 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCceeecHhHHHHHHHHHhcC----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++.+.+++... ....+.+.|+|.+|+||||+|+.+.+.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999998887431 123567889999999999999999873
No 208
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.27 E-value=0.0062 Score=63.59 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=36.9
Q ss_pred CceeecHhHHHHHHHHHhcC-------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++|.+..++.+...+... ......+.++|..|+||||+|+.+.+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 35778888888888877542 122468999999999999999999873
No 209
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.17 E-value=0.009 Score=70.84 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=38.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-+.++||+.+++++++.|.... ..-+-++|.+|+||||+|+.+.+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999997653 34457899999999999999986
No 210
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.0065 Score=64.46 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=60.9
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcccc---------------------cc---cccc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSNY---------------------VK---HYFD 213 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~~---------------------~~---~~F~ 213 (798)
-.+++|.+..++.+...+..+. +.-+.++|..|+||||+|+.+.+... ++ +.|.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~ 101 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA 101 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence 3568898888888888887654 33388999999999999999876310 00 0010
Q ss_pred --ccce---EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 214 --CHAW---RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 214 --~~~w---r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
...+ +-++|+|++.. ....+.+...+.......++|++|...
T Consensus 102 ~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 102 STRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp HBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred hhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 0011 46788998843 345555655444334456777776543
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.05 E-value=0.0059 Score=67.94 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=38.5
Q ss_pred CCceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++++.+++... ....+-|-|+|.+|+|||++|+.+.+.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 356899999999998887532 233456889999999999999999873
No 212
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.04 E-value=0.0089 Score=65.98 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=35.6
Q ss_pred CCceeecHhHHHHHHHHHh---cC-------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLI---EG-------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~---~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+++|.++.++++.+.+. .. -...+-|.++|.+|+||||||+.+.+.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4579999998877776643 21 011234779999999999999999874
No 213
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.96 E-value=0.0028 Score=66.15 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHhcCCC-CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 165 DDRMEELLDLLIEGPP-QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 165 ~~~~~~i~~~L~~~~~-~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
....+.+.+++..... ....+-++|..|+|||+||+.+++.
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3344555566654322 2467889999999999999999874
No 214
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.86 E-value=0.0074 Score=71.50 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=38.4
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-+.++|++.++++++..|.... ..-+-++|.+|+||||+|+.+.+.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999997643 233679999999999999999873
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.83 E-value=0.0068 Score=63.11 Aligned_cols=48 Identities=25% Similarity=0.204 Sum_probs=38.6
Q ss_pred CCceeecHhHHHHHHHHHhcC-----------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG-----------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~-----------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++++.+++... -...+.|.++|.+|+||||||+.+.+.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999988877431 133567899999999999999999973
No 216
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.82 E-value=0.011 Score=62.25 Aligned_cols=42 Identities=21% Similarity=0.167 Sum_probs=35.7
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++|.+..++.+...+..+. -+-++|.+|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHH
Confidence 468899999999888887643 467899999999999999987
No 217
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.80 E-value=0.0067 Score=67.37 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=38.1
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-+.++|++.++++++..|.... ..-+-++|.+|+||||+|+.+.+.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999997643 234568999999999999999873
No 218
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.76 E-value=0.01 Score=53.14 Aligned_cols=55 Identities=29% Similarity=0.356 Sum_probs=46.4
Q ss_pred eEEEecCcccc--cCcccccCcCccceEEecCCCccccChhhhhCCCCCcEeecccccc
Q 048418 449 RVLDLGSLVLI--QYPSGIENLFLLRYLKLNIPSLKSLPPSLLSNLPNLYTLDMPFSYI 505 (798)
Q Consensus 449 r~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~lp~~i~~~L~~L~~L~L~~~~l 505 (798)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|...|..+++|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47888888888 8887654 4799999999999999998888999999999998843
No 219
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0042 Score=64.69 Aligned_cols=46 Identities=7% Similarity=0.056 Sum_probs=39.3
Q ss_pred ceeecHhHHHHHHHHHhcC--CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 160 DMVGLDDRMEELLDLLIEG--PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~~~--~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+.||+++.++|...|... .+....+-|+|.+|+|||++|+.|.++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999888652 345778899999999999999999984
No 220
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.013 Score=63.63 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=39.2
Q ss_pred CCCCceeecHhHHHHHHHHHhc-----------CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.-.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||+||++|.+.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456788999999888776542 1134677889999999999999999984
No 221
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.012 Score=63.82 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=39.2
Q ss_pred CCCCceeecHhHHHHHHHHHhc-----------CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.-.++.|.++.+++|.+.+.. +-...+=|-++|++|.|||+||++|.+.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446789999999998876642 1134566889999999999999999983
No 222
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.012 Score=63.98 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=39.8
Q ss_pred CCCCCceeecHhHHHHHHHHHhc----C-------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 155 SSKNRDMVGLDDRMEELLDLLIE----G-------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 155 ~~~~~~~vG~~~~~~~i~~~L~~----~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...-.++.|.++.+++|.+.+.. + -...+=|-++|++|.|||+||++|.+.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34456889999999998876432 2 134677889999999999999999984
No 223
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.012 Score=63.86 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=38.9
Q ss_pred CCCCceeecHhHHHHHHHHHhc-----------CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.-.++.|.++.+++|.+.+.- +-...+=|-++|++|.|||+||++|.+.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3445789999999998876431 1134677889999999999999999983
No 224
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.012 Score=62.88 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=38.8
Q ss_pred CCCCceeecHhHHHHHHHHHhc-----------CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.-+++.|.++.+++|.+.+.- +-...+=|-++|++|.|||+||++|.+.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4456788999999888776532 1134566789999999999999999983
No 225
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.48 E-value=0.011 Score=57.83 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 167 RMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 167 ~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.++|.+.+....+.-.+|+|+|..|.|||||++.+..
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555544334568999999999999999999987
No 226
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.47 E-value=0.0046 Score=59.44 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc--cc------cccccccc--eEEEEEEECCCChhhHHHH
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN--YV------KHYFDCHA--WRYLIVFDNVWRISAWDVI 235 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~--~~------~~~F~~~~--wr~LivlDdvw~~~~~~~l 235 (798)
...+..++.+ -++-..+.|+|++|+||||+|..+.+.- ++ +.+|.... =.-+++|||+-.. .|+.+
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s~f~l~~l~~~kIiiLDEad~~-~~~~~ 120 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTT-CWTYF 120 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEECHH-HHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccchhhhcccCCCCEEEEECCCch-hHHHH
Confidence 4555555543 2234568999999999999988777631 11 12220000 0238899999543 45443
No 227
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.34 E-value=0.014 Score=65.80 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=40.2
Q ss_pred CCCceeecHhHHHHHHHHHhcC---------------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEG---------------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~---------------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+++|++..++++.+++... .+..+.+-|+|.+|+||||+|+.+.+.
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999651 013578899999999999999999863
No 228
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.33 E-value=0.0087 Score=63.30 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=36.4
Q ss_pred CceeecHhHHHHHHHHHhcC---CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|.+..++.+-..+... ......+.++|.+|+||||||+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 46788887777776666432 233567899999999999999999884
No 229
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.26 E-value=0.018 Score=55.91 Aligned_cols=41 Identities=22% Similarity=0.168 Sum_probs=33.0
Q ss_pred cHhHHHHHHHHHhcC-CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 164 LDDRMEELLDLLIEG-PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 164 ~~~~~~~i~~~L~~~-~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
|+...+++.+.+... .....+|+|.|..|.||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 455677788777653 34568999999999999999999986
No 230
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.18 E-value=0.014 Score=59.07 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=35.5
Q ss_pred CCceeecHhHHHHHHHHHh---cCC-------CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLI---EGP-------PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~---~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++++.+++. ... ...+-+.|+|..|+||||||+.+.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4578999988887766542 210 12344789999999999999999874
No 231
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.10 E-value=0.01 Score=60.43 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=33.7
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++|.+..+.++.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45889999999888877542112245669999999999999999874
No 232
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.02 E-value=0.033 Score=56.07 Aligned_cols=59 Identities=10% Similarity=0.105 Sum_probs=37.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc-------cccccccccce--EEEEEEECCCCh
Q 048418 171 LLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN-------YVKHYFDCHAW--RYLIVFDNVWRI 229 (798)
Q Consensus 171 i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~-------~~~~~F~~~~w--r~LivlDdvw~~ 229 (798)
+..+|....++-.-|-++|++|.|||++|..+.+.- ....+|...-+ +.+++.|+.--.
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~~~~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEEECSCCEE
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcccceeeccccccccccccccEEEEeccccch
Confidence 445554432345679999999999999999998731 01234422211 777777766433
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.01 E-value=0.02 Score=67.77 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=37.7
Q ss_pred CceeecHhHHHHHHHHHhcC-------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++|.+..++.+.+.+... ......+-++|..|+|||++|+.+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999888887531 123447899999999999999999873
No 234
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.99 E-value=0.011 Score=61.48 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=36.9
Q ss_pred CceeecHhHHHHHHHHHhcC------------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++|.+..++.+...+... .....-+-++|.+|+|||++|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998887541 112455779999999999999999863
No 235
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.90 E-value=0.025 Score=58.26 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.7
Q ss_pred CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 178 GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 178 ~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+..+|+|+|..|+||||||+.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999999877
No 236
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.71 E-value=0.014 Score=54.73 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 048418 183 SVVAILDSIGLDKTAFAAEA 202 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v 202 (798)
.+|.|.|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 237
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.028 Score=60.39 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=38.8
Q ss_pred CCCCceeecHhHHHHHHHHHhc----C-------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIE----G-------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~----~-------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.-+++.|.++.+++|.+.+.- + -...+=|-++|++|.|||+||++|.+.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 3445788999999888776532 1 134577889999999999999999984
No 238
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.66 E-value=0.028 Score=58.95 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=34.0
Q ss_pred eeecHhHHHHHHHHHhc--CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 161 MVGLDDRMEELLDLLIE--GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 161 ~vG~~~~~~~i~~~L~~--~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|+.+.-.+++++.+.. ..+....|.++|+.|+||||+++.+..
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 35666777888887753 234567799999999999999999887
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.60 E-value=0.031 Score=63.13 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=35.9
Q ss_pred CceeecHhHHHHHHHHHhc----CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIE----GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~----~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|.+..++.+.+.+.- ....-.++.++|.+|+||||||+.+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4588999888888665532 122456899999999999999999986
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.58 E-value=0.027 Score=57.53 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=33.5
Q ss_pred CCCceeecHhHHHHHHHHHhcC------------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 157 KNRDMVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 157 ~~~~~vG~~~~~~~i~~~L~~~------------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.++.|.++.++++.+.+... ...-. +.++|.+|.||||||+.+.+.
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 3457889999888887754310 11123 899999999999999999873
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.55 E-value=0.017 Score=55.26 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+|+|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999883
No 242
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.49 E-value=0.025 Score=60.46 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=35.6
Q ss_pred ceeecHhHHHHHHHHHh-------------cCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 160 DMVGLDDRMEELLDLLI-------------EGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 160 ~~vG~~~~~~~i~~~L~-------------~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++|.+..++.+...+. ........|.++|.+|+|||++|+.+.+
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 47899999998888773 1112346688999999999999999987
No 243
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.46 E-value=0.019 Score=68.85 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=38.6
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-+.++||+.+++++++.|.... ..-+.++|.+|+||||+|+.+.+.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999997653 334678999999999999999873
No 244
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.43 E-value=0.055 Score=56.14 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=56.1
Q ss_pred cHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc-ccc-ccccccce------------------------
Q 048418 164 LDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN-YVK-HYFDCHAW------------------------ 217 (798)
Q Consensus 164 ~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~-~~~-~~F~~~~w------------------------ 217 (798)
-++..+.+.+.+..+. ....-++|..|+||||+|+.+.+.- ... .+.+....
T Consensus 2 ~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp --CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS
T ss_pred hHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccc
Confidence 3455667777776654 6788899999999999999986520 000 01111000
Q ss_pred ---EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 218 ---RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 218 ---r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
+-++|+|++.. ....+.+...+....+.+.+|++|.+.
T Consensus 80 ~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 45778888864 356666666665555567777777543
No 245
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.42 E-value=0.036 Score=61.25 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=36.7
Q ss_pred CCceeecHhHHHHHHHH---HhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDL---LIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~---L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..+++|.++.++.+..+ +..+....+-+-++|++|+|||++|+.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 46899999998865544 4444333456789999999999999999984
No 246
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.42 E-value=0.018 Score=54.05 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 247
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.41 E-value=0.025 Score=56.98 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=33.8
Q ss_pred CCceeecHhHHHHHHHHHhc--C---------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIE--G---------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~--~---------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-++++|.+..+.++.++... . ..... +.|+|..|+||||||+.+.+.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 45788988877776654421 1 01123 889999999999999999873
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.31 E-value=0.049 Score=64.44 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=37.1
Q ss_pred CCceeecHhHHHHHHHHHhcC-------CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 158 NRDMVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|.+..++.+...+... ......+-++|..|+|||++|+.+.+
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 356889999998888877531 12345788999999999999999976
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.27 E-value=0.02 Score=55.39 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 250
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.26 E-value=0.096 Score=55.15 Aligned_cols=90 Identities=11% Similarity=0.015 Sum_probs=55.8
Q ss_pred HhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhccc---ccc-----------------cccccc---------
Q 048418 165 DDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSSN---YVK-----------------HYFDCH--------- 215 (798)
Q Consensus 165 ~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~~---~~~-----------------~~F~~~--------- 215 (798)
++..+.+.+.+..+. -...+-++|..|+||||+|+.+.+.- ... .|+|..
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 445566666665543 24578899999999999999886521 000 011100
Q ss_pred -ce-------------------EEEEEEECCCC--hhhHHHHhhhcCCCCCCcEEEEEeeec
Q 048418 216 -AW-------------------RYLIVFDNVWR--ISAWDVIRKILPDNQNGSRVLITLAQI 255 (798)
Q Consensus 216 -~w-------------------r~LivlDdvw~--~~~~~~l~~~~~~~~~gs~ilvTtR~~ 255 (798)
+- +-++|+|++.. ....+.+...+.....++.+|++|.+.
T Consensus 87 ~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 00 56788898864 345666666665555567777777654
No 251
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.21 E-value=0.017 Score=53.04 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=41.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhccccccccccccce-------------EEEEEEECCCChh--hHHHHhhhcCC-CCCC
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAW-------------RYLIVFDNVWRIS--AWDVIRKILPD-NQNG 245 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-------------r~LivlDdvw~~~--~~~~l~~~~~~-~~~g 245 (798)
-..++|+|..|+|||||++.+++.....+ +..... .-++||||+-... .-+.+...+.. ...|
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g 114 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAG-KNAAYIDAASMPLTDAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSG 114 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTT-CCEEEEETTTSCCCGGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcC-CcEEEEcHHHhhHHHHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999988421111 111000 2378999986532 22222222211 1123
Q ss_pred -cEEEEEeee
Q 048418 246 -SRVLITLAQ 254 (798)
Q Consensus 246 -s~ilvTtR~ 254 (798)
++||+||+.
T Consensus 115 ~~~iiits~~ 124 (149)
T 2kjq_A 115 KGFLLLGSEY 124 (149)
T ss_dssp CCEEEEEESS
T ss_pred CcEEEEECCC
Confidence 358888874
No 252
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.15 E-value=0.04 Score=64.55 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=38.8
Q ss_pred CCCCceeecHhHHHHHHHHHh----cCC-------CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLI----EGP-------PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~----~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.-.++.|.++.+++|.+++. .++ ..++=|-++|.+|.|||+||++|.+.
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 445678899998888877653 221 24677889999999999999999984
No 253
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.13 E-value=0.022 Score=54.17 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 254
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.05 E-value=0.019 Score=53.96 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 255
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.02 E-value=0.024 Score=53.59 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999987
No 256
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.01 E-value=0.029 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|+|..|.|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999998765
No 257
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.00 E-value=0.027 Score=53.23 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 258
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.97 E-value=0.034 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+|+|+|+.|.||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999999976
No 259
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.95 E-value=0.032 Score=57.12 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCCCceeecHhHHHHHHHHHhc--C---------CCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIE--G---------PPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~--~---------~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...++++|.++.++++.++... . ..... +.|+|..|+||||||+.+.+.
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 3456789998887777665431 1 01123 889999999999999999873
No 260
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.81 E-value=0.029 Score=53.87 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=19.1
Q ss_pred hhccCceeEEEecCcccc-----cCcccccCcCccceEEecCCCcc
Q 048418 442 CEMFKLLRVLDLGSLVLI-----QYPSGIENLFLLRYLKLNIPSLK 482 (798)
Q Consensus 442 ~~~~~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~ 482 (798)
+..-+.|+.|+|++|.|. .+.+.+..-..|+.|+|++|.|.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344445555555555543 22223333345555555555544
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.80 E-value=0.033 Score=53.27 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|+.|.|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 262
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.76 E-value=0.032 Score=58.17 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.2
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.+||+|.|-|||||||.|-.+.-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999877655
No 263
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.72 E-value=0.031 Score=54.10 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 264
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.72 E-value=0.035 Score=53.72 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+|.|+|+.|.||||+|+.+...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999873
No 265
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.70 E-value=0.033 Score=52.82 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=20.3
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 266
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.68 E-value=0.029 Score=54.29 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+|+|+|+.|.|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.67 E-value=0.03 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+.|.|+|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999987
No 268
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.63 E-value=0.089 Score=63.05 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=36.7
Q ss_pred CceeecHhHHHHHHHHHhcC-------CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++|.+..++.+...+... ......+.|+|..|+|||++|+.+.+
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999998888877531 12346889999999999999999976
No 269
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.59 E-value=0.039 Score=53.65 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+|+|+|..|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 270
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.59 E-value=0.036 Score=54.02 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+|+|+|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 271
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.58 E-value=0.071 Score=51.11 Aligned_cols=89 Identities=9% Similarity=0.084 Sum_probs=64.2
Q ss_pred hhHHHhhccCceeEEEecCc-ccc-----cCcccccCcCccceEEecCCCcc-----ccChhhhhCCCCCcEeecccccc
Q 048418 437 DWEKICEMFKLLRVLDLGSL-VLI-----QYPSGIENLFLLRYLKLNIPSLK-----SLPPSLLSNLPNLYTLDMPFSYI 505 (798)
Q Consensus 437 ~~~~~~~~~~~Lr~L~L~~~-~i~-----~lp~~i~~L~~Lr~L~L~~~~i~-----~lp~~i~~~L~~L~~L~L~~~~l 505 (798)
.+...+.+-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|.+. .+-..+ ..-+.|++|+|++|.+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcC
Confidence 34455666788999999985 664 35566666778999999999887 344444 5667899999998876
Q ss_pred cc-----chhhhcccccCceeccCCc
Q 048418 506 DH-----TADEFWKMNKLKHLNFGSI 526 (798)
Q Consensus 506 ~~-----lp~~i~~L~~L~~L~L~~~ 526 (798)
.. +-+.+..-+.|++|+|++|
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCC
Confidence 53 4556666677888888754
No 272
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.54 E-value=0.065 Score=47.78 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=46.4
Q ss_pred ceEEecCCCcc--ccChhhhhCCCCCcEeeccccccccchhh-hcccccCceeccCCcccC
Q 048418 472 RYLKLNIPSLK--SLPPSLLSNLPNLYTLDMPFSYIDHTADE-FWKMNKLKHLNFGSITLP 529 (798)
Q Consensus 472 r~L~L~~~~i~--~lp~~i~~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~L~~~~i~ 529 (798)
..++.+++.++ .+|..+ -.+|++|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888888 999765 45799999999999999754 678999999999998664
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.52 E-value=0.029 Score=53.57 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 274
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.52 E-value=0.066 Score=55.76 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.0
Q ss_pred CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 179 PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 179 ~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.....+|||.|..|+||||+|+.+..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999876
No 275
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.47 E-value=0.038 Score=55.69 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+|+|.|+.|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999977
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.47 E-value=0.026 Score=54.60 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999977
No 277
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.45 E-value=0.033 Score=54.00 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 278
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.44 E-value=0.057 Score=59.96 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=35.9
Q ss_pred CceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 159 RDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++|.+..++.+...+..+. -|-++|.+|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 457899999988888876653 5678999999999999999873
No 279
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.43 E-value=0.035 Score=51.89 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 280
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.41 E-value=0.042 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|+|+|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.38 E-value=0.036 Score=52.92 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 282
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.35 E-value=0.04 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999987
No 283
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.32 E-value=0.037 Score=53.42 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 284
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.32 E-value=0.064 Score=56.17 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++..+++|+|..|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999999987
No 285
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.32 E-value=0.043 Score=65.09 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=39.6
Q ss_pred CCCCceeecHhHHHHHHHHHhc-----------CCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 156 SKNRDMVGLDDRMEELLDLLIE-----------GPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 156 ~~~~~~vG~~~~~~~i~~~L~~-----------~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-.+++|.+..++++.+++.. .-.....|.++|.+|+||||||+.+.+.
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3446799999999999888753 1123567899999999999999999873
No 286
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.29 E-value=0.037 Score=53.64 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+|+|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 287
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.26 E-value=0.067 Score=53.89 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHhcC---CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 165 DDRMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 165 ~~~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+...+++++.+..+ .....+|.++|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455565555543 23468899999999999999999987
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.23 E-value=0.044 Score=52.41 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 289
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.21 E-value=0.062 Score=57.66 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=34.9
Q ss_pred CceeecHhHHHHHHHHHhc----------------------------CCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIE----------------------------GPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~----------------------------~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++|.+..++.+...+.. .......+-++|..|+||||+|+.+.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4578998888888777620 011234578999999999999999987
No 290
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.20 E-value=0.04 Score=54.34 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|+|+|+.|.||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 291
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.16 E-value=0.043 Score=55.01 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999999994
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.15 E-value=0.036 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++|.|+|+.|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999986
No 293
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.15 E-value=0.081 Score=54.37 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcC---CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 167 RMEELLDLLIEG---PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 167 ~~~~i~~~L~~~---~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++++..+..+ .....+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444432 23467899999999999999999976
No 294
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.15 E-value=0.041 Score=52.44 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 295
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.15 E-value=0.049 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+|.|.|+.|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999986
No 296
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.14 E-value=0.12 Score=56.11 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=35.2
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCChhhHHHHh
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRISAWDVIR 236 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~~~~~~l~ 236 (798)
+..||.++|.+|+||||++..+...-.-+++ |+++|==|......++.+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~------kVllv~~D~~R~aa~eqL~ 148 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGY------KVGVVCSDTWRPGAYHQLR 148 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC------CEEEEECCCSSTHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCC------eEEEEeCCCcchhHHHHHH
Confidence 4789999999999999999988763211121 5667666777765555544
No 297
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.12 E-value=0.045 Score=52.09 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|+|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 298
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.12 E-value=0.044 Score=53.38 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 299
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.08 E-value=0.053 Score=50.23 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++++|..|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 300
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.07 E-value=0.086 Score=50.19 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=17.2
Q ss_pred EEEEEecCCCChHHHHHHHHh
Q 048418 183 SVVAILDSIGLDKTAFAAEAY 203 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~ 203 (798)
.++.|+|..|+||||+|..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 477899999999999984443
No 301
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.07 E-value=0.047 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 302
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.04 E-value=0.052 Score=56.51 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-.+|+|+|..|.|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 467999999999999999999987
No 303
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.04 E-value=0.037 Score=53.51 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999976
No 304
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.04 E-value=0.07 Score=53.37 Aligned_cols=37 Identities=14% Similarity=-0.029 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++..-.........+|.|.|+.|+||||+|+.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 15 LNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3344333333233467899999999999999999976
No 305
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.98 E-value=0.14 Score=55.64 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=34.9
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCChhhHHHHh
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRISAWDVIR 236 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~~~~~~l~ 236 (798)
...||.++|.+|+||||++..+...-.-++. |+++|==|+.....++.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~------kVllv~~D~~r~~a~eqL~ 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY------KVGLVAADVYRPAAYDQLL 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC------CEEEEEECCSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC------eEEEEecCccchhHHHHHH
Confidence 4789999999999999999998863221121 5666655777765555544
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.97 E-value=0.048 Score=50.97 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++++|+|..|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999999987
No 307
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.96 E-value=0.05 Score=57.59 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=33.4
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++.+...+.... ..-+-|+|..|+|||++|+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 4568999887666544444322 223789999999999999999873
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.95 E-value=0.037 Score=52.12 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|.|.|+.|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 309
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.92 E-value=0.048 Score=53.01 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.89 E-value=0.05 Score=54.86 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|.|+.|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999976
No 311
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.89 E-value=0.052 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.+|.|+|+.|+||||+|+.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999873
No 312
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.89 E-value=0.087 Score=51.76 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+.+.+.+... ...+|.|+|.+|+|||||+..+...
T Consensus 26 a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 26 ADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444444332 4789999999999999999998763
No 313
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.87 E-value=0.093 Score=55.79 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555554445688999999999999999999865
No 314
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.85 E-value=0.04 Score=53.42 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+|.|+|+.|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999977
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.79 E-value=0.061 Score=53.88 Aligned_cols=24 Identities=4% Similarity=0.106 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-.+|+|.|..|.|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999977
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.78 E-value=0.049 Score=52.21 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 317
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.71 E-value=0.085 Score=55.92 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=47.8
Q ss_pred EEEEEecCCCChHHHHHHHHhccc------cccc-----ccccc-----ce----------------------EEEEEEE
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSSN------YVKH-----YFDCH-----AW----------------------RYLIVFD 224 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~~------~~~~-----~F~~~-----~w----------------------r~LivlD 224 (798)
.+++|+|..|.|||||.+.+..-. .+-. .|... +. .=+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 499999999999999999885420 1100 01000 00 4467899
Q ss_pred CCCChhhHHHHhhhcCCCCCCcEEEEEeeeccccc
Q 048418 225 NVWRISAWDVIRKILPDNQNGSRVLITLAQIEIVT 259 (798)
Q Consensus 225 dvw~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 259 (798)
.+-+.+.++.+.... ..|--|++||...+.+.
T Consensus 204 Ep~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 204 EMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp CCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred CCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 998777666655442 23667899998877654
No 318
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.71 E-value=0.056 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+|.+.|+.|+||||+|+.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999986
No 319
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.68 E-value=0.063 Score=52.59 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=30.4
Q ss_pred ecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 163 GLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 163 G~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+.++..+++.+.+... ...+|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555565555433 4789999999999999999998763
No 320
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.66 E-value=0.04 Score=52.31 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999977
No 321
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.65 E-value=0.05 Score=56.18 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999883
No 322
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.62 E-value=0.059 Score=54.53 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 323
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.55 E-value=0.13 Score=53.75 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.++|+|+|.+|+||||++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999877
No 324
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.50 E-value=0.047 Score=51.13 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|.|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 325
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.48 E-value=0.06 Score=50.16 Aligned_cols=21 Identities=5% Similarity=0.022 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 326
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.48 E-value=0.11 Score=56.72 Aligned_cols=38 Identities=21% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcC-------CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 167 RMEELLDLLIEG-------PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 167 ~~~~i~~~L~~~-------~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++.++|... ....++|.++|.+|+||||+|..+..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345666666432 13478999999999999999999876
No 327
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.47 E-value=0.053 Score=51.87 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=20.4
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999884
No 328
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.45 E-value=0.066 Score=51.39 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+|+|.|+.|.||||+|+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987
No 329
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.44 E-value=0.077 Score=58.87 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=36.6
Q ss_pred CCCCCceeecHhHHHHHHHHHh---cCC-------CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 155 SSKNRDMVGLDDRMEELLDLLI---EGP-------PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 155 ~~~~~~~vG~~~~~~~i~~~L~---~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.....+++|.++.++++.++.. ... .-.+=+.|+|.+|+||||||+.+.+.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445679999988877766543 210 11223889999999999999999873
No 330
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.44 E-value=0.051 Score=53.39 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 331
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.40 E-value=0.069 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+|+|+|.+|+||||+++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999999987
No 332
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.40 E-value=0.061 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 333
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.39 E-value=0.048 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=17.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 334
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.38 E-value=0.055 Score=51.99 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|+|.|+.|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.37 E-value=0.064 Score=54.01 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+|+|+|+.|.||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.36 E-value=0.066 Score=51.99 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.32 E-value=0.063 Score=51.27 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 338
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.30 E-value=0.11 Score=55.01 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+++|+|..|+||||+++.+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 457999999999999999999987
No 339
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.30 E-value=0.068 Score=53.33 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.. .+++|+|..|.|||||++.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 35 7999999999999999999988
No 340
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.20 E-value=0.066 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|+||||+|+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999987
No 341
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.20 E-value=0.2 Score=55.57 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=31.7
Q ss_pred CeEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCChh
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRIS 230 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~~ 230 (798)
+.++|.|+|.+|+||||++.++.....-++. |.++|=.|.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~------kVllVd~D~~r~a 143 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW------KTCLICADTFRAG 143 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEEECCSSSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCC------eEEEEeccccchh
Confidence 4789999999999999999998862211111 6788888887653
No 342
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.17 E-value=0.066 Score=51.42 Aligned_cols=24 Identities=8% Similarity=0.238 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-++|.|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999986
No 343
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.17 E-value=0.11 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 344
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.14 E-value=0.11 Score=56.41 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=35.8
Q ss_pred CceeecHhHHHHHHHHHhcC------------CCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 159 RDMVGLDDRMEELLDLLIEG------------PPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 159 ~~~vG~~~~~~~i~~~L~~~------------~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..++|.++.++.+...+... +...+-|-++|++|+||||+|+.+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 56899999888887666321 11345688999999999999999988
No 345
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.12 E-value=0.14 Score=53.10 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
....+|+|+|..|.|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999987
No 346
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.10 E-value=0.13 Score=53.27 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+|.|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 468999999999999999999987
No 347
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.10 E-value=0.081 Score=54.73 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+++|+|..|+||||+++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999999987
No 348
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.03 E-value=0.073 Score=52.28 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|+|..|+|||||++.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999987
No 349
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.02 E-value=0.052 Score=50.99 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++++|+|..|.|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 350
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.99 E-value=0.077 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999973
No 351
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.91 E-value=0.088 Score=51.48 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+.+||-|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999873
No 352
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.87 E-value=0.13 Score=56.34 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCC-------CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 168 MEELLDLLIEGP-------PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 168 ~~~i~~~L~~~~-------~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+.+.++|.... ..-.+|+|+|.+|+|||||++.+..
T Consensus 272 ~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 272 KEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp HHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 445555554321 2467999999999999999999987
No 353
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.85 E-value=0.079 Score=52.67 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999987
No 354
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.84 E-value=0.073 Score=52.50 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 355
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.83 E-value=0.1 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++.+.|.||+||||++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 468888999999999999999976
No 356
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.82 E-value=0.077 Score=52.99 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|+|..|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999874
No 357
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.81 E-value=0.086 Score=49.77 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+|+|.|+.|.||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999987
No 358
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.81 E-value=0.094 Score=54.42 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.8
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|+|+|-||+||||+|-.+..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHH
Confidence 3578999999999999999988876
No 359
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.70 E-value=0.08 Score=51.50 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 360
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.68 E-value=0.066 Score=51.00 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=19.4
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+.|.|+|+.|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3477999999999999999876
No 361
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.68 E-value=0.059 Score=53.37 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=16.1
Q ss_pred EEEEEecCCCChHHHHHHHHh-c
Q 048418 183 SVVAILDSIGLDKTAFAAEAY-S 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~-~ 204 (798)
.+++|+|..|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 6
No 362
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.67 E-value=0.084 Score=50.55 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=19.8
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 363
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.62 E-value=0.089 Score=51.78 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|+|||||++.+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999976
No 364
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.57 E-value=0.099 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999965
No 365
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.56 E-value=0.046 Score=53.29 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=19.8
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|+|.|..|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999977
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.55 E-value=0.086 Score=51.69 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 367
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.54 E-value=0.084 Score=54.49 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.7
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+|+++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999886
No 368
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.52 E-value=0.079 Score=51.48 Aligned_cols=23 Identities=4% Similarity=-0.187 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|+||||+|+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.50 E-value=0.079 Score=52.29 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...|.|.|+.|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 370
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.49 E-value=0.091 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999883
No 371
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.48 E-value=0.089 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999987
No 372
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.47 E-value=0.09 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999987
No 373
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.45 E-value=0.092 Score=52.37 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 374
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.42 E-value=0.098 Score=50.94 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+|.|.|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999987
No 375
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.36 E-value=0.074 Score=53.37 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|+|+.|.||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 376
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.35 E-value=0.095 Score=52.89 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 377
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.33 E-value=0.095 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999987
No 378
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.30 E-value=0.092 Score=50.64 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|+||||+|+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999988
No 379
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.30 E-value=0.082 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999988
No 380
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.29 E-value=0.095 Score=51.12 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 381
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.28 E-value=0.1 Score=52.44 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999998
No 382
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.25 E-value=0.11 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999988
No 383
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.24 E-value=0.095 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 384
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.16 E-value=0.1 Score=52.98 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999987
No 385
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.15 E-value=0.11 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|+|.|-||+||||+|-.+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 6888899999999999988876
No 386
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.12 E-value=0.1 Score=52.53 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999988
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.11 E-value=0.1 Score=50.94 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=19.1
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 388
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.08 E-value=0.11 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999998
No 389
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.06 E-value=0.29 Score=50.43 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=29.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCCh
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRI 229 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~ 229 (798)
..+|+++|.+|+||||++..+.....-.+. |++++=-|....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~------~v~l~~~D~~r~ 139 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF------KVGLVGADVYRP 139 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC------CEEEEECCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC------eEEEEecCCCCH
Confidence 679999999999999999998863221111 455555555544
No 390
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.03 E-value=0.17 Score=53.90 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...+++-+.-.-+.-.+++|+|..|.|||||++.+..
T Consensus 155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444554433333457999999999999999999986
No 391
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.02 E-value=0.11 Score=50.32 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=20.1
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999977
No 392
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.01 E-value=0.11 Score=49.01 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 67899999999999999999987
No 393
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.01 E-value=0.12 Score=53.10 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++|+|.|.||+||||+|-.+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 57899999999999999998876
No 394
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.99 E-value=0.11 Score=52.08 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 395
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.93 E-value=0.11 Score=52.07 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999988
No 396
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.83 E-value=0.091 Score=51.62 Aligned_cols=23 Identities=13% Similarity=-0.113 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 397
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.79 E-value=0.12 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999988
No 398
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.78 E-value=0.12 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999988
No 399
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.78 E-value=0.12 Score=52.54 Aligned_cols=22 Identities=9% Similarity=0.142 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 400
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.75 E-value=0.12 Score=55.80 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 170 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 170 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++.+.|........+++|+|..|+|||||.+.+..
T Consensus 57 ~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 57 AISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34444443333467999999999999999999988
No 401
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.71 E-value=0.12 Score=52.01 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999988
No 402
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.70 E-value=0.12 Score=53.97 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|+|.|+.|+||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 403
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.70 E-value=0.12 Score=52.84 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999988
No 404
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.57 E-value=0.16 Score=46.95 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 405
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.51 E-value=0.12 Score=49.39 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 568899999999999999999874
No 406
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.49 E-value=0.16 Score=53.69 Aligned_cols=34 Identities=18% Similarity=0.011 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 170 ELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 170 ~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++++.+..= .+=..++|+|..|+|||||++.+.+
T Consensus 163 raID~~~pi-~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 163 RVLDLASPI-GRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHSCC-BTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeeeee-cCCcEEEEecCCCCChhHHHHHHHH
Confidence 455555331 1235889999999999999998876
No 407
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.47 E-value=0.15 Score=55.55 Aligned_cols=38 Identities=32% Similarity=0.303 Sum_probs=28.1
Q ss_pred HHHHHHHHhcC------C-CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 168 MEELLDLLIEG------P-PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 168 ~~~i~~~L~~~------~-~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++.+++..+ . .+..+|.|+|.+|+||||+|..+...
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666432 1 23579999999999999999998873
No 408
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.39 E-value=0.18 Score=57.84 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=37.0
Q ss_pred CCceeecHhHHHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 158 NRDMVGLDDRMEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 158 ~~~~vG~~~~~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.+++|.+..++.+...+..+ ..+.|+|..|+||||||+.+..-
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 357899998888887777665 37899999999999999999873
No 409
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.37 E-value=0.14 Score=50.93 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
....+|+|.|+.|.||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999987
No 410
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.18 E-value=0.12 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+-.+|+|.|..|.||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999999987
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.13 E-value=0.14 Score=50.57 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|.|.|+.|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 412
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.12 E-value=0.17 Score=46.32 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..|.++|.+|+|||||++.+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 413
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.01 E-value=0.15 Score=48.29 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.8
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-|.|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 414
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.01 E-value=0.14 Score=50.27 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=19.5
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 415
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.00 E-value=0.2 Score=48.74 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=21.4
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-.++.|+|.+|+||||||+.+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 416
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.99 E-value=0.15 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 417
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.97 E-value=0.2 Score=47.12 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.....|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999999875
No 418
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.91 E-value=0.14 Score=49.91 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=19.3
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 419
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.88 E-value=0.15 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|+|.+|+|||||++.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 420
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.81 E-value=0.14 Score=50.00 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 421
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.75 E-value=0.16 Score=51.35 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||++.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999988
No 422
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.75 E-value=0.2 Score=47.22 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...|+++|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999874
No 423
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.75 E-value=0.18 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..+|+|+|.+|+||||++..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999987
No 424
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.73 E-value=0.14 Score=51.92 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=20.3
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++|+|..|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999983
No 425
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.64 E-value=0.17 Score=50.11 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...|.|.|+.|+||||+|+.+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 426
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.61 E-value=0.1 Score=53.63 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=18.7
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 427
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.59 E-value=0.18 Score=50.85 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.+++|+|..|.|||||++.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 46999999999999999999876
No 428
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.38 E-value=0.18 Score=51.98 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 46899999999999999999875
No 429
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.36 E-value=0.16 Score=52.53 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999999987
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.23 E-value=0.19 Score=52.20 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
++|.|+|+.|+||||||+.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 431
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.08 E-value=0.18 Score=52.52 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
++.+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999863
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.05 E-value=0.19 Score=51.80 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 433
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.99 E-value=0.19 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999987
No 434
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.96 E-value=0.33 Score=51.02 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhc
Q 048418 171 LLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 171 i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+++-+.-.-.+-.+++|+|..|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444433333468999999999999999999975
No 435
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.96 E-value=0.2 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+|-|.|++|+||||.|+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999873
No 436
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.96 E-value=0.2 Score=49.61 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.++.|+|.+|+||||||+.+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999999887
No 437
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.93 E-value=0.35 Score=50.94 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+..+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999999875
No 438
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.88 E-value=0.64 Score=43.76 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-.|.++|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999865
No 439
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.80 E-value=0.23 Score=51.72 Aligned_cols=23 Identities=9% Similarity=0.283 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++|.|+|+.|+||||||..+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999998
No 440
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=88.72 E-value=0.3 Score=53.21 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=18.8
Q ss_pred EEEEecCCCChHHHHHHHHhc
Q 048418 184 VVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++|+|..|+||||||+.+..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHh
Confidence 589999999999999997765
No 441
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.68 E-value=0.19 Score=45.90 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.|.++|.+|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 442
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.67 E-value=0.58 Score=44.29 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-.|.|+|..|+|||||.+.+.++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567899999999999999999875
No 443
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.65 E-value=0.31 Score=45.30 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 444
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=88.65 E-value=3.5 Score=43.39 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...+|+++|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999874
No 445
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.51 E-value=0.23 Score=46.00 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.--|.|+|.+|+|||||++.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999999875
No 446
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.49 E-value=0.22 Score=52.60 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||++.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 35899999999999999999987
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.48 E-value=0.19 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
-.++.|+|.+|+||||||..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 448
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.45 E-value=0.21 Score=51.42 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
=.+++|+|.+|+|||||++.+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999998873
No 449
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.42 E-value=0.33 Score=46.43 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=24.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 171 LLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 171 i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+++.+.-... ...|+++|.+|+|||||.+.+.++
T Consensus 15 ~l~~~~~~~~-~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 15 VLQFLGLYKK-TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHTCTTC-CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHhhccCC-CcEEEEECCCCCCHHHHHHHHhcC
Confidence 4455532222 345789999999999999999864
No 450
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.39 E-value=0.23 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=21.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++|.|.|+.|+||||||..+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 451
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.35 E-value=0.24 Score=48.91 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.-.+|.|.|+.|+||||+++.+.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999988
No 452
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.33 E-value=0.23 Score=46.81 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+.+|+|..|.|||||+.+|+-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999864
No 453
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=88.26 E-value=0.49 Score=47.64 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 168 MEELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 168 ~~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..++.+.+.....+.-.|+++|..|+|||||...+...
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 33444455544445677899999999999999999874
No 454
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.18 E-value=0.23 Score=46.37 Aligned_cols=23 Identities=13% Similarity=0.045 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 455
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.15 E-value=0.25 Score=50.96 Aligned_cols=24 Identities=13% Similarity=0.028 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-+++-|+|++|+||||||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456789999999999999999873
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.09 E-value=0.25 Score=49.16 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...|.|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999988
No 457
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.07 E-value=0.3 Score=44.80 Aligned_cols=24 Identities=4% Similarity=0.077 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.|.|+|.+|+|||||++.+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999999874
No 458
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.07 E-value=0.26 Score=49.08 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=18.0
Q ss_pred EEEecCCCChHHHHHHHHhc
Q 048418 185 VAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~ 204 (798)
|+|.|-||+||||+|..+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 66789999999999999876
No 459
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=87.99 E-value=1.3 Score=42.87 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999999874
No 460
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.98 E-value=0.25 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-|.++|.+|+|||||.+.+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999864
No 461
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.98 E-value=0.25 Score=53.63 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...+|.|+|+.|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999999873
No 462
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.81 E-value=0.28 Score=46.47 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
....|.|+|.+|+|||||+..+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998874
No 463
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.81 E-value=0.27 Score=45.36 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
--|.++|.+|+|||||.+.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 464
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=87.79 E-value=0.31 Score=45.44 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..--|.|+|..|+|||||+..+.++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 465
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.69 E-value=0.25 Score=46.89 Aligned_cols=23 Identities=17% Similarity=-0.126 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.--|.|+|.+|+|||||++.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999988876
No 466
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=87.69 E-value=0.58 Score=47.34 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCeEEEEEecCCCChHHHHHHHHhcc
Q 048418 169 EELLDLLIEGPPQLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 169 ~~i~~~L~~~~~~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.++.+.+.........|.++|..|+|||||...+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 26 LELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3344444444444678889999999999999999875
No 467
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.66 E-value=0.29 Score=52.17 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999877
No 468
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.65 E-value=0.26 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
--|.|+|.+|+|||||.+.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 469
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.57 E-value=0.24 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.4
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-|.++|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998763
No 470
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.54 E-value=0.31 Score=44.92 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.-.|.|+|.+|+|||||.+.+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999998864
No 471
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.53 E-value=0.28 Score=51.76 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||.+.+..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 472
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.52 E-value=0.32 Score=46.11 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+...|.|+|..|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999874
No 473
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.49 E-value=0.26 Score=51.98 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999998
No 474
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.48 E-value=0.36 Score=44.90 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
+...|.|+|..|+|||||.+.+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998875
No 475
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.45 E-value=0.37 Score=44.36 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+--|.|+|.+|+|||||+..+.+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999999864
No 476
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.43 E-value=0.32 Score=51.44 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+..+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999999876
No 477
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.40 E-value=0.55 Score=47.54 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999875
No 478
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.37 E-value=0.25 Score=52.10 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=21.4
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.+++|+|..|+|||||.+.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999984
No 479
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.34 E-value=0.3 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.++|.|+|+.|+||||||..+..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 57899999999999999999987
No 480
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.31 E-value=0.37 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCeEEEEEec-CCCChHHHHHHHHhc
Q 048418 180 PQLSVVAILD-SIGLDKTAFAAEAYS 204 (798)
Q Consensus 180 ~~~~vi~i~G-~gGiGKTtLa~~v~~ 204 (798)
.+.++|+|+| .||+||||+|-.+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH
Confidence 4689999995 999999999988876
No 481
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.25 E-value=0.29 Score=45.09 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.--|.|+|..|+|||||.+.+.++
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998774
No 482
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.23 E-value=0.29 Score=44.98 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=19.6
Q ss_pred EEEEecCCCChHHHHHHHHhcc
Q 048418 184 VVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 184 vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-|.++|..|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 483
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.08 E-value=0.17 Score=48.85 Aligned_cols=24 Identities=13% Similarity=-0.069 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
-..|+|+|..|+|||||.+.+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998764
No 484
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.04 E-value=0.22 Score=50.24 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCChHHHHHHHHhc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
+...|.|.|..|+||||+|+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 485
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.99 E-value=0.28 Score=46.20 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.--|.|+|.+|+|||||++.+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 486
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.97 E-value=0.3 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHhcc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
--|.|+|..|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999988764
No 487
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.97 E-value=0.31 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 5899999999999999999998
No 488
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.96 E-value=1.2 Score=41.08 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 489
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.88 E-value=0.28 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||.+.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999987
No 490
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.85 E-value=0.59 Score=50.52 Aligned_cols=42 Identities=24% Similarity=0.063 Sum_probs=29.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhccccccccccccceEEEEEEECCCCh
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSSNYVKHYFDCHAWRYLIVFDNVWRI 229 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wr~LivlDdvw~~ 229 (798)
..+|.|+|.+|+||||++..+..-..-.+. +++++=-|+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~------~Vllvd~D~~r~ 139 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGR------RPLLVAADTQRP 139 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTC------CEEEEECCSSCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC------eEEEeeccccCc
Confidence 679999999999999999998873221111 455554466654
No 491
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.81 E-value=0.31 Score=46.08 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.--|.|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999877653
No 492
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=86.80 E-value=0.26 Score=50.96 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+| +|+|..|+|||||.+.++.
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC
T ss_pred EEE-EEECCCCCCHHHHHHHHhC
Confidence 444 9999999999999999887
No 493
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.80 E-value=0.32 Score=51.47 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999988
No 494
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.73 E-value=0.35 Score=46.92 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
....|.++|.+|+|||||+..+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998874
No 495
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.63 E-value=0.33 Score=51.62 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999999998
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.60 E-value=0.32 Score=44.53 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=18.9
Q ss_pred EEEecCCCChHHHHHHHHhcc
Q 048418 185 VAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 185 i~i~G~gGiGKTtLa~~v~~~ 205 (798)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998753
No 497
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.58 E-value=0.33 Score=51.58 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHhc
Q 048418 183 SVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 183 ~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
.+++|+|..|.|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999999988
No 498
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=86.54 E-value=0.33 Score=45.97 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhcc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
.--|.|+|.+|+|||||++.+.++
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 456789999999999999888764
No 499
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.54 E-value=0.36 Score=45.23 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCChHHHHHHHHhcc
Q 048418 181 QLSVVAILDSIGLDKTAFAAEAYSS 205 (798)
Q Consensus 181 ~~~vi~i~G~gGiGKTtLa~~v~~~ 205 (798)
..-.|.|+|.+|+|||||+..+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567889999999999999998864
No 500
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.53 E-value=0.34 Score=51.52 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=21.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhc
Q 048418 182 LSVVAILDSIGLDKTAFAAEAYS 204 (798)
Q Consensus 182 ~~vi~i~G~gGiGKTtLa~~v~~ 204 (798)
=.+++|+|..|.|||||.+.+..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999999987
Done!