Your job contains 1 sequence.
>048420
MVQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLK
LTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARAT
KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI
SAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYI
VLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKI
KKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDV
PSVPLDYLLADLDSSDKEEGDDSMIE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048420
(386 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2044299 - symbol:NMD3 "AT2G03820" species:3702... 359 1.1e-53 3
DICTYBASE|DDB_G0271306 - symbol:nmd3 "60S ribosomal expor... 333 1.6e-53 3
FB|FBgn0023542 - symbol:Nmd3 "Nonsense-mediated mRNA 3" s... 249 7.5e-41 3
UNIPROTKB|E1BTL9 - symbol:NMD3 "Uncharacterized protein" ... 241 1.8e-38 3
CGD|CAL0001704 - symbol:NMD3 species:5476 "Candida albica... 262 1.9e-38 3
SGD|S000001213 - symbol:NMD3 "Protein involved in nuclear... 263 9.0e-37 3
ASPGD|ASPL0000044316 - symbol:AN1711 species:162425 "Emer... 255 3.3e-36 3
UNIPROTKB|G4N0U7 - symbol:MGG_05817 "Nonsense-mediated mR... 253 6.5e-35 3
POMBASE|SPAC16C9.03 - symbol:nmd3 "export adaptor Nmd3 (p... 293 1.7e-34 2
ZFIN|ZDB-GENE-050320-149 - symbol:nmd3 "NMD3 homolog (S. ... 251 6.3e-30 2
WB|WBGene00012030 - symbol:T25G3.3 species:6239 "Caenorha... 262 2.0e-29 2
MGI|MGI:2140103 - symbol:Nmd3 "NMD3 homolog (S. cerevisia... 257 5.0e-20 1
RGD|1308468 - symbol:Nmd3 "NMD3 homolog (S. cerevisiae)" ... 222 1.4e-17 2
UNIPROTKB|I3LDB7 - symbol:NMD3 "Uncharacterized protein" ... 195 7.6e-17 2
UNIPROTKB|Q96D46 - symbol:NMD3 "60S ribosomal export prot... 217 1.2e-16 2
UNIPROTKB|C9JA08 - symbol:NMD3 "60S ribosomal export prot... 217 1.4e-16 2
UNIPROTKB|Q08DS5 - symbol:NMD3 "60S ribosomal export prot... 215 2.7e-16 2
>TAIR|locus:2044299 [details] [associations]
symbol:NMD3 "AT2G03820" species:3702 "Arabidopsis
thaliana" [GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006611 "protein export from nucleus"
evidence=IMP] [GO:0007029 "endoplasmic reticulum organization"
evidence=IMP] [GO:0009834 "secondary cell wall biogenesis"
evidence=IMP] Pfam:PF04981 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GO:GO:0006611 GO:GO:0007029 GO:GO:0009834 KO:K07562
OMA:PVCKDNV InterPro:IPR007064 EMBL:AC007196 EMBL:AY099778
EMBL:AY128878 IPI:IPI00544052 PIR:F84452 RefSeq:NP_178476.1
UniGene:At.20649 IntAct:Q9SI58 STRING:Q9SI58 PRIDE:Q9SI58
EnsemblPlants:AT2G03820.1 GeneID:814908 KEGG:ath:AT2G03820
TAIR:At2g03820 InParanoid:Q9SI58 PhylomeDB:Q9SI58
ProtClustDB:CLSN2683854 Genevestigator:Q9SI58 Uniprot:Q9SI58
Length = 516
Score = 359 (131.4 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 82/177 (46%), Positives = 112/177 (63%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI +HDA +RA +I+++D GI+FFF +SHA FVEF+ +VVP + R ++QLVS KS
Sbjct: 178 QLILRHDAASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKS 237
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
KYT SV+I + A LGNLGP V+CTKV+++I LLDP TLR +
Sbjct: 238 SLYNYKYTYSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAF 297
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIG 273
LDA QYWRS F++ TSRQLV+Y V DV+ E T+ + L ++ I + IG
Sbjct: 298 LDARQYWRSGFRSALTSRQLVKYFVFDVEPPVGEA-TVGGQKYALSYVQIARESDIG 353
Score = 251 (93.4 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 74/199 (37%), Positives = 107/199 (53%)
Query: 34 CLKSEVDITESLQKHANIT---PCPK-IKLKLTVQKEVLEGVIVEQSDVV--MSRNITCV 87
C+K ++ + K+A P K IK+KLTVQ EVL G ++EQS V R+ C
Sbjct: 86 CIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLNGAVLEQSYPVEYTVRDNLCE 145
Query: 88 NLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFF 133
+ Q PD W A++QL +LI +HDA +RA +I+++D GI+FFF
Sbjct: 146 SC--SRFQANPDQWVASIQLRQHVSHRRTFFYLEQLILRHDAASRAIRIQQVDQGIDFFF 203
Query: 134 SGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGP 193
+SHA FVEF+ +VVP + R ++QLVS KS KYT SV+I + +L L P
Sbjct: 204 GNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKYTYSVKICPVCREDLVCL-P 262
Query: 194 FVICTKVTNSIALLDPFTL 212
+KV + + L P +
Sbjct: 263 ----SKVASGLGNLGPLVV 277
Score = 243 (90.6 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 55/118 (46%), Positives = 76/118 (64%)
Query: 238 EYIVLDVKVASTENDT--ILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP- 294
+Y + V++A E+D + +THLGH+L GD A+GYD++ AN ND E+E Y+ V
Sbjct: 338 KYALSYVQIAR-ESDIGKMFYVQTHLGHILKPGDQALGYDIYGANVNDNEMEKYRLSVKN 396
Query: 295 --PDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
P+ I IKK Y+E+ +RK +K KLK L ME+D S+ D EK + EYEEFLRDL
Sbjct: 397 GLPEAILIKKCYEEQRERKQKKSRNWKLKSLPMEMDDSRGRVDPEKTDKEYEEFLRDL 454
Score = 169 (64.5 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK 56
++ +G+F V++T+ CCKCG+ M NA+NMCV CL+SEVDITE LQK I CP+
Sbjct: 3 VMDESGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPE 61
Score = 56 (24.8 bits), Expect = 1.1e-53, Sum P(3) = 1.1e-53
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 352 ASVTDKEDVPSVPXXXXXXXXXXXXKEEGDD 382
AS+TD E PSVP +EE DD
Sbjct: 478 ASMTDGEGAPSVPIEELLADLDLSFEEEDDD 508
>DICTYBASE|DDB_G0271306 [details] [associations]
symbol:nmd3 "60S ribosomal export protein"
species:44689 "Dictyostelium discoideum" [GO:0043023 "ribosomal
large subunit binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0000055
"ribosomal large subunit export from nucleus" evidence=ISS]
[GO:0015031 "protein transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] dictyBase:DDB_G0271306
Pfam:PF04981 GO:GO:0005829 GO:GO:0005634 GO:GO:0005654
GO:GO:0015031 GenomeReviews:CM000151_GR EMBL:AAFI02000006
GO:GO:0000055 GO:GO:0043023 eggNOG:COG1499 KO:K07562 OMA:PVCKDNV
InterPro:IPR007064 RefSeq:XP_645660.1 STRING:Q55BF2
EnsemblProtists:DDB0302495 GeneID:8617852 KEGG:ddi:DDB_G0271306
ProtClustDB:CLSZ2846908 Uniprot:Q55BF2
Length = 530
Score = 333 (122.3 bits), Expect = 1.6e-53, Sum P(3) = 1.6e-53
Identities = 81/218 (37%), Positives = 124/218 (56%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
++K+KLT+QKEV I++Q ++ + + C + F D W++ VQL
Sbjct: 105 RLKVKLTIQKEVFTSAILQQIFIIEFIVQGQQC-DKCQKF--EAKDTWNSVVQLRQKVDH 161
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH+A ++ IK+ G++FFFS R+HA+KFVEF+ + P +++ +Q
Sbjct: 162 KRTFLYIEQLILKHNAHSQTLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQ 221
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+S ++ KYT SVEI +S AH LGN+GP V+ TKV+N I +D
Sbjct: 222 LISSDEQNNAANYKYTFSVEIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFID 281
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
P TL + A +W SPF+AL + +QLVE+ VLDV +
Sbjct: 282 PNTLHTGEISALTFWNSPFRALSSYKQLVEFTVLDVNL 319
Score = 134 (52.2 bits), Expect = 1.6e-53, Sum P(3) = 1.6e-53
Identities = 36/103 (34%), Positives = 55/103 (53%)
Query: 251 NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP-PDTIKIKKSYKEKNQ 309
ND I R+HLG++L GD A+GYD+ +N D +L K PD + +KK+Y KN
Sbjct: 343 NDNIYDIRSHLGNILNPGDLALGYDVASSNFPDSDLAGMKKNQQLPDFVLVKKTYPSKND 402
Query: 310 RKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMA 352
+ ++ K P E + K D+ + + EEFLR++ A
Sbjct: 403 FRFKRHWYFKEIPKEGIENPKKFEIDQ--MERDREEFLREIEA 443
Score = 126 (49.4 bits), Expect = 1.6e-53, Sum P(3) = 1.6e-53
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
+ CC CG+ + +N SNMCV C+KS+VDITE + K I C
Sbjct: 12 ILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWC 52
>FB|FBgn0023542 [details] [associations]
symbol:Nmd3 "Nonsense-mediated mRNA 3" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] Pfam:PF04981
GO:GO:0022008 EMBL:AE014298 EMBL:AL009194 CTD:51068 eggNOG:COG1499
GeneTree:ENSGT00390000005104 KO:K07562 OMA:PVCKDNV
InterPro:IPR007064 EMBL:AY058494 RefSeq:NP_477332.1 UniGene:Dm.7201
IntAct:O46050 MINT:MINT-746738 STRING:O46050
EnsemblMetazoa:FBtr0070425 GeneID:31195 KEGG:dme:Dmel_CG3460
UCSC:CG3460-RA FlyBase:FBgn0023542 InParanoid:O46050
OrthoDB:EOG473N6G ChiTaRS:NMD3 GenomeRNAi:31195 NextBio:772403
Uniprot:O46050
Length = 521
Score = 249 (92.7 bits), Expect = 7.5e-41, Sum P(3) = 7.5e-41
Identities = 56/150 (37%), Positives = 86/150 (57%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI KH A IK G++FF++ +HA + V+F+ +VP + K+L+S S
Sbjct: 183 QLILKHKAHENTLGIKPEHGGLDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHS 242
Query: 168 RNCKCKYTCSVEISAISA-----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
N KY SVEI+ +S H LGNL P V+ +V++SI L+DP T +
Sbjct: 243 NNYNYKYNWSVEIAPVSKDSAVCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAE 302
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
L + Y+R+PF+A+ +QLVEY+V+D+ V
Sbjct: 303 LTSQVYFRAPFEAVCNPKQLVEYVVMDIDV 332
Score = 150 (57.9 bits), Expect = 7.5e-41, Sum P(3) = 7.5e-41
Identities = 39/100 (39%), Positives = 53/100 (53%)
Query: 251 NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR 310
ND + TR+HLGHLL +GD +GY+ EAN ND+E + S PD I ++K Y + +
Sbjct: 367 NDNPIHTRSHLGHLLKVGDSVMGYNTGEANINDLEFDKLSSDEIPDVILVRKHYDRQTRL 426
Query: 311 KHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
R K+K L E A E+ +Y EFL DL
Sbjct: 427 SQRVW---KIKHLAAE-------ATDERSKYDYHEFLDDL 456
Score = 146 (56.5 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 45/145 (31%), Positives = 70/145 (48%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
+IK+KLTV E++ G +++Q VV +N C + D W VQ+
Sbjct: 118 RIKVKLTVHGEIIGGTMLQQVFVVEFTVQNQMCNDC---HRTEAKDFWRCLVQVRQRAEN 174
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH A IK G++FF++ +HA + V+F+ +VP + K+
Sbjct: 175 KKTFYYLEQLILKHKAHENTLGIKPEHGGLDFFYANDNHARRMVDFLLTMVPGKVTTSKR 234
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS 184
L+S S N KY SVEI+ +S
Sbjct: 235 LISHDIHSNNYNYKYNWSVEIAPVS 259
Score = 127 (49.8 bits), Expect = 7.5e-41, Sum P(3) = 7.5e-41
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 3 QAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLT 62
+ AG AV + CC+CG+ + N +NMCVTCL++ VDITE++ K A + C + L
Sbjct: 17 KGAGSNAV---ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQ 73
Query: 63 VQKEVLEGVI 72
E ++ +
Sbjct: 74 PPNEWIQAAL 83
>UNIPROTKB|E1BTL9 [details] [associations]
symbol:NMD3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005730 "nucleolus" evidence=IEA] Pfam:PF04981
GO:GO:0005730 CTD:51068 GeneTree:ENSGT00390000005104 KO:K07562
OMA:PVCKDNV InterPro:IPR007064 EMBL:AADN02021063 EMBL:AADN02021062
IPI:IPI00591200 RefSeq:XP_422813.2 Ensembl:ENSGALT00000015516
GeneID:425009 KEGG:gga:425009 NextBio:20827260 Uniprot:E1BTL9
Length = 504
Score = 241 (89.9 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 51/148 (34%), Positives = 84/148 (56%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI KH +IK++ G++F++S + HA K V+F+ VP++S+ ++L S S
Sbjct: 174 QLILKHRLHQNTLRIKEIHDGLDFYYSSKQHAQKMVDFLQCTVPSRSKSSQRLTSHDVHS 233
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
K T SVEI + A +LGN+ +C +VT+++ L+DP TL+
Sbjct: 234 NVYNYKSTFSVEIVPVCKDNVVCLSPKLAQSLGNMSQICVCIRVTSTVHLIDPSTLQIAE 293
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDV 244
+D + YWR PF +L +QL E+IV+D+
Sbjct: 294 IDGNTYWRHPFNSLFNPKQLEEFIVMDI 321
Score = 170 (64.9 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 49/154 (31%), Positives = 78/154 (50%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
++KLKLTVQKEV+ G +++Q VV + ++ C + D W A VQ+
Sbjct: 109 RLKLKLTVQKEVINGAVLQQVFVVEYLIQSQMCEDC---HRIEAKDFWKAVVQVRQKTLH 165
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH +IK++ G++F++S + HA K V+F+ VP++S+ ++
Sbjct: 166 KKTFYYLEQLILKHRLHQNTLRIKEIHDGLDFYYSSKQHAQKMVDFLQCTVPSRSKSSQR 225
Query: 160 LVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGP 193
L S S K T SVEI + N+ L P
Sbjct: 226 LTSHDVHSNVYNYKSTFSVEIVPVCKDNVVCLSP 259
Score = 147 (56.8 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 38/92 (41%), Positives = 55/92 (59%)
Query: 259 THLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPP 318
THLGH+L GD +G+DL N ND + PD + IKKSY ++ +R+HR+ N
Sbjct: 363 THLGHILNPGDLVLGFDLANCNLNDEFVNKMSPHNIPDVVLIKKSY-DRAKRQHRR-NW- 419
Query: 319 KLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
KLK LE + +G+ D E+ +Y++FL DL
Sbjct: 420 KLKELERDREGTD--TDDER---QYQDFLEDL 446
Score = 118 (46.6 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 4 AAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
AA + ++ CC CG+ + N +NMCV CL++ VDITE + K +++ C
Sbjct: 5 AAPAAPTQGSILCCHCGVPIPPNPANMCVGCLRARVDITEGIPKQLSVSFC 55
>CGD|CAL0001704 [details] [associations]
symbol:NMD3 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=IEA] CGD:CAL0001704 Pfam:PF04981 EMBL:AACQ01000183
EMBL:AACQ01000182 eggNOG:COG1499 HOGENOM:HOG000168152 KO:K07562
InterPro:IPR007064 RefSeq:XP_711779.1 RefSeq:XP_711797.1
STRING:Q59PZ4 GeneID:3646613 GeneID:3646614 KEGG:cal:CaO19.706
KEGG:cal:CaO19.8325 Uniprot:Q59PZ4
Length = 520
Score = 262 (97.3 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 55/149 (36%), Positives = 90/149 (60%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI KH+A I++ G++FF++ ++HA K V+F+ V P + + ++LVS S
Sbjct: 180 QLILKHNAHVDTVSIQETKDGLDFFYAQKNHAAKMVDFLQAVAPIKVKKSEELVSMDIHS 239
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
+ K++ SVEI+ I AH++GN+ V+C K+TN+I +DP TL+
Sbjct: 240 GSSSYKFSYSVEIAPICRDDLVVLPKKLAHSMGNISRLVLCNKITNAIQFMDPNTLQTAD 299
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVK 245
L A +WRSPF +L + Q+VE+IVLD++
Sbjct: 300 LSAPVFWRSPFPSLLDATQMVEFIVLDIE 328
Score = 145 (56.1 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 43/149 (28%), Positives = 75/149 (50%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNIT--CVNLVPGFMQTGPDHWDAAVQL------ 107
+I++K+TVQ E + IV+Q+ V I C + + + W A VQ+
Sbjct: 115 RIRIKITVQGEAMANTIVQQTFEVEYVVIAMQCPDCAKSYTT---NTWRATVQIRQKVPH 171
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH+A I++ G++FF++ ++HA K V+F+ V P + + ++
Sbjct: 172 KRTFLYLEQLILKHNAHVDTVSIQETKDGLDFFYAQKNHAAKMVDFLQAVAPIKVKKSEE 231
Query: 160 LVSRGTKSRNCKCKYTCSVEISAISAHNL 188
LVS S + K++ SVEI+ I +L
Sbjct: 232 LVSMDIHSGSSSYKFSYSVEIAPICRDDL 260
Score = 124 (48.7 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 33/122 (27%), Positives = 61/122 (50%)
Query: 238 EYIVLDVKVASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLV 293
+Y++ D++V+ ND RTHLG +L GD +GY L N N + +
Sbjct: 336 KYVLADIEVSRASDLGSNDQTFYVRTHLGGILHPGDSCLGYYLTNTNINSELWDTLDTDN 395
Query: 294 PPDTIKIKKSYKEKNQR-KHRKPNPPKLKPLEMEV----DGSKCGADREKVNNEYEEFLR 348
P+ + +KK Y K+++ K+RK ++ ++ D + ++E+ +YE FL+
Sbjct: 396 TPEVVIVKKHYARKSKKSKNRKWKLKRMAREHNDIVANDDSRQARQEQERAERDYELFLQ 455
Query: 349 DL 350
+L
Sbjct: 456 EL 457
Score = 107 (42.7 bits), Expect = 1.9e-38, Sum P(3) = 1.9e-38
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 13 TVSCCKCGITMV-SNASNMCVTCLKSEVDITESLQKHANITPC 54
TV CC CG+ M S+ MC C+K VDITE + + AN++ C
Sbjct: 20 TVLCCNCGVPMDGSSGLVMCYDCIKLNVDITEGIPREANVSFC 62
>SGD|S000001213 [details] [associations]
symbol:NMD3 "Protein involved in nuclear export of the large
ribosomal subunit" species:4932 "Saccharomyces cerevisiae"
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0043023 "ribosomal large subunit binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000055
"ribosomal large subunit export from nucleus" evidence=IMP]
[GO:0006810 "transport" evidence=IEA] [GO:0015031 "protein
transport" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
SGD:S000001213 Pfam:PF04981 GO:GO:0005829 GO:GO:0005654
GO:GO:0015031 EMBL:BK006934 EMBL:U00027 GO:GO:0000055 GO:GO:0043023
eggNOG:COG1499 GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
KO:K07562 OMA:PVCKDNV InterPro:IPR007064 OrthoDB:EOG40311R
EMBL:U31376 PIR:S48909 RefSeq:NP_012040.1 ProteinModelPortal:P38861
DIP:DIP-1827N IntAct:P38861 MINT:MINT-389613 STRING:P38861
PaxDb:P38861 PeptideAtlas:P38861 EnsemblFungi:YHR170W GeneID:856575
KEGG:sce:YHR170W NextBio:982429 Genevestigator:P38861
GermOnline:YHR170W Uniprot:P38861
Length = 518
Score = 263 (97.6 bits), Expect = 9.0e-37, Sum P(3) = 9.0e-37
Identities = 55/148 (37%), Positives = 89/148 (60%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI KH+A I + G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T +
Sbjct: 176 QLILKHNAHVDTISISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHT 235
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
K++ SVEI I A ++GN+ FV+C+K++N++ +DP TL+
Sbjct: 236 GASTYKFSYSVEIVPICKDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTAD 295
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDV 244
L YWR+PF AL QLVE+IVLDV
Sbjct: 296 LSPSVYWRAPFNALADVTQLVEFIVLDV 323
Score = 155 (59.6 bits), Expect = 6.8e-22, Sum P(3) = 6.8e-22
Identities = 48/172 (27%), Positives = 85/172 (49%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDH-WDAAVQL------- 107
+I++KLTVQ E + I++Q+ V I P ++ + W A VQ+
Sbjct: 111 RIRIKLTVQGEAMTNTIIQQTFEV--EYIVIAMQCPDCARSYTTNTWRATVQIRQKVPHK 168
Query: 108 -------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQL 160
+LI KH+A I + G++FF++ ++HAVK ++F+ VVP + + ++L
Sbjct: 169 RTFLFLEQLILKHNAHVDTISISEAKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEEL 228
Query: 161 VSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTL 212
+S+ T + K++ SVEI I +L V+ K+ S+ + F L
Sbjct: 229 ISQDTHTGASTYKFSYSVEIVPICKDDL-----VVLPKKLAKSMGNISQFVL 275
Score = 119 (46.9 bits), Expect = 9.0e-37, Sum P(3) = 9.0e-37
Identities = 33/120 (27%), Positives = 60/120 (50%)
Query: 240 IVLDVKVASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPP 295
++ D+ VA T ND + R+HLG + GD +GY + +N N + P
Sbjct: 334 VLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGYFIANSNYNSDLFDGLNIDYVP 393
Query: 296 DTIKIKKSYKEKNQR-KHRKPN--PPKLKPLEMEVD-GSKCGA-DREKVNNEYEEFLRDL 350
D + +KK Y+ K+++ +H K + K ++ +D S+ + E+ +YE FL++L
Sbjct: 394 DVVLVKKLYQRKSKKSRHWKLKRMAKEHKDIDASLDYNSRAQKQEMERAEKDYELFLQEL 453
Score = 94 (38.1 bits), Expect = 9.0e-37, Sum P(3) = 9.0e-37
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 13 TVSCCKCGITMVSNASN--MCVTCLKSEVDITESLQKHANITPC 54
T+ CC CG T + ++ MC C+K VDIT+ + + ANI+ C
Sbjct: 16 TLLCCNCG-TPIDGSTGLVMCYDCIKLTVDITQGIPREANISFC 58
>ASPGD|ASPL0000044316 [details] [associations]
symbol:AN1711 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0000055 "ribosomal large subunit export from
nucleus" evidence=IEA] Pfam:PF04981 EMBL:BN001307 EMBL:AACD01000026
GO:GO:0000055 GO:GO:0043023 GO:GO:0022625 eggNOG:COG1499
HOGENOM:HOG000168152 KO:K07562 OMA:PVCKDNV InterPro:IPR007064
OrthoDB:EOG40311R RefSeq:XP_659315.1 STRING:Q5BCL9
EnsemblFungi:CADANIAT00008354 GeneID:2875408 KEGG:ani:AN1711.2
Uniprot:Q5BCL9
Length = 511
Score = 255 (94.8 bits), Expect = 3.3e-36, Sum P(3) = 3.3e-36
Identities = 55/149 (36%), Positives = 89/149 (59%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRG--T 165
+LI KH A IK+ +GI+FFF+ R+HA F++F+ VP + +Q++S T
Sbjct: 178 QLILKHKAHQNTINIKEAKNGIDFFFAQRNHAEAFIDFLHSAVPVEVTKSQQIISEDIHT 237
Query: 166 KSRNCKCKYT------CSVEISAIS---AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
+++ K Y+ C ++ A+ A LGN+ P ++C ++ SI+ LDP TL+
Sbjct: 238 STKSYKFTYSAKIVPICKDDLVALPIKLAKQLGNISPLLLCNRIGTSISFLDPNTLQSAD 297
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVK 245
L++ YWRSPF +L ++ LVE+IVLDV+
Sbjct: 298 LNSRIYWRSPFTSLAEAKDLVEFIVLDVE 326
Score = 167 (63.8 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 51/167 (30%), Positives = 84/167 (50%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQT-GPDHWDAAVQL------- 107
+IK+KLT+Q V +GVI++Q+ V+ I P ++ P+ W A+VQ+
Sbjct: 113 RIKVKLTIQDSVSDGVILQQTFEVIY--IVMYQQCPECAKSYTPNTWRASVQVRQQVLHK 170
Query: 108 -------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQL 160
+LI KH A IK+ +GI+FFF+ R+HA F++F+ VP + +Q+
Sbjct: 171 RTFLYLEQLILKHKAHQNTINIKEAKNGIDFFFAQRNHAEAFIDFLHSAVPVEVTKSQQI 230
Query: 161 VSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALL 207
+S + K+T S +I I +L L P + ++ N LL
Sbjct: 231 ISEDIHTSTKSYKFTYSAKIVPICKDDLVAL-PIKLAKQLGNISPLL 276
Score = 144 (55.7 bits), Expect = 3.3e-36, Sum P(3) = 3.3e-36
Identities = 43/125 (34%), Positives = 61/125 (48%)
Query: 231 HTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQN-----DIE 285
H+ + + V + + D TRTHLG ++ GD +GY L N N +IE
Sbjct: 330 HSRGKWFQSEVTVARASDFSGDKQYFTRTHLGSIIHPGDSVLGYMLTGTNFNNAQFDEIE 389
Query: 286 LENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEE 345
N S PD I +KK Y ++ KH K N KLK + E D ++E V N++E
Sbjct: 390 SSNTYSSTIPDVILVKKFYPRRS--KHTKRNW-KLKRMATEHDPYLLPNNKESVENDFEM 446
Query: 346 FLRDL 350
FLRD+
Sbjct: 447 FLRDV 451
Score = 78 (32.5 bits), Expect = 3.3e-36, Sum P(3) = 3.3e-36
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 3 QAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
QA G + T+ C CG +V + +C C+K ++DI++ +Q+ A + C
Sbjct: 12 QADGASEIPTTL-CYNCGAPLVG--TTICPDCMKLQIDISQGIQREAVLNFC 60
>UNIPROTKB|G4N0U7 [details] [associations]
symbol:MGG_05817 "Nonsense-mediated mRNA decay protein 3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF04981 EMBL:CM001233 GO:GO:0000055 GO:GO:0043023
GO:GO:0022625 KO:K07562 InterPro:IPR007064 RefSeq:XP_003712132.1
EnsemblFungi:MGG_05817T0 GeneID:2684158 KEGG:mgr:MGG_05817
Uniprot:G4N0U7
Length = 525
Score = 253 (94.1 bits), Expect = 6.5e-35, Sum P(3) = 6.5e-35
Identities = 55/149 (36%), Positives = 86/149 (57%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI KH A IK+ GI+FFFS R+ A KFV+F+ VP +++ ++L+S+ +
Sbjct: 186 QLILKHGAHRDTINIKEAKDGIDFFFSARNQAEKFVDFLHSSVPVRTKKSQELISQDIHT 245
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
K+T VE+ I A +GN+ P V+C ++ S+ LDP TL+
Sbjct: 246 STKSYKFTFLVELIPICKEDLVVLPIKLAKQIGNISPLVLCHRIGTSVNFLDPATLQTAE 305
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVK 245
+ A YWR+PF+A+ S+ LVE+IV+DV+
Sbjct: 306 VSAPIYWRAPFRAIAESKDLVEFIVMDVE 334
Score = 169 (64.5 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 53/174 (30%), Positives = 86/174 (49%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDH-WDAAVQL------- 107
+++LKLT+Q V EGV+++QS V+ I P ++ + W A+VQ+
Sbjct: 121 RVRLKLTIQDAVSEGVLLQQSFEVIY--IVSYQQCPDCAKSYTANVWRASVQVRQKVLHK 178
Query: 108 -------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQL 160
+LI KH A IK+ GI+FFFS R+ A KFV+F+ VP +++ ++L
Sbjct: 179 RTFLFLEQLILKHGAHRDTINIKEAKDGIDFFFSARNQAEKFVDFLHSSVPVRTKKSQEL 238
Query: 161 VSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRH 214
+S+ + K+T VE+ I +L V+ K+ I + P L H
Sbjct: 239 ISQDIHTSTKSYKFTFLVELIPICKEDL-----VVLPIKLAKQIGNISPLVLCH 287
Score = 141 (54.7 bits), Expect = 6.5e-35, Sum P(3) = 6.5e-35
Identities = 40/106 (37%), Positives = 58/106 (54%)
Query: 251 NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE---LENYKSL--VPPDTIKIKKSY- 304
ND RTHL LL GD +GY L N N+ E LE+ S PD + +KK Y
Sbjct: 359 NDRTYFARTHLSGLLHAGDSVMGYMLTGTNFNNDEFQALEDSNSFGSTIPDVVLVKKHYQ 418
Query: 305 KEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ +N+ K+R ++ E E+ K AD+E+++ EYE+FLRD+
Sbjct: 419 RRRNRNKNRNWKLKRMNKDEGELLPKK--ADQERLDAEYEQFLRDV 462
Score = 73 (30.8 bits), Expect = 6.5e-35, Sum P(3) = 6.5e-35
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 13 TVSCCKCGITMVSNASN--MCVTCLKSEVDITESLQKHANITPC 54
T+ CC CG + + +C C+K+ DI++ +Q+ A + C
Sbjct: 25 TILCCNCGAPIDGTTATGALCYDCVKTTHDISQGVQREAVLHFC 68
Score = 38 (18.4 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 307 KNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
KN +K +KP+ + E E+ + KV+ +E L D+
Sbjct: 476 KNTKKTKKPDADAMSVAETEMTYDDEDDNAPKVS--MDELLDDM 517
>POMBASE|SPAC16C9.03 [details] [associations]
symbol:nmd3 "export adaptor Nmd3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000027 "ribosomal
large subunit assembly" evidence=ISO] [GO:0000054 "ribosomal
subunit export from nucleus" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0015031 "protein transport"
evidence=IEA] PomBase:SPAC16C9.03 Pfam:PF04981 GO:GO:0005829
GO:GO:0005634 GO:GO:0005654 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0015031 GO:GO:0000027 GO:GO:0000054 eggNOG:COG1499
HOGENOM:HOG000168152 KO:K07562 OMA:PVCKDNV InterPro:IPR007064
PIR:S62473 RefSeq:NP_593077.1 STRING:Q09817
EnsemblFungi:SPAC16C9.03.1 GeneID:2542319 KEGG:spo:SPAC16C9.03
OrthoDB:EOG40311R NextBio:20803380 Uniprot:Q09817
Length = 498
Score = 293 (108.2 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 80/224 (35%), Positives = 111/224 (49%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDH-WDAAVQL----- 107
+IK+KLTVQKE I++QS V N C P +T H W A Q+
Sbjct: 115 RIKVKLTVQKEAFTNTILQQSFQVEFYVNNTQC----PDCARTYTPHIWKAVCQVRQKVL 170
Query: 108 ---------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEK 158
++I KH A IK+ GI+F+F R+HA+K VEF+ VVP + + +
Sbjct: 171 HKRTFLYLEQIILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSE 230
Query: 159 QLVSRGTKSRNCKCKYTCSVEISAISAHNL-----------GNLGPFVICTKVTNSIALL 207
+L+S KS K+T S+EI I +L GN+ V+CTKV +I L
Sbjct: 231 ELISEDFKSNTANYKFTYSIEIVPICKDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFL 290
Query: 208 DPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTEN 251
DP TL+ C + YWR+PF AL +L E+IV DV + N
Sbjct: 291 DPLTLQTCDMLPSIYWRTPFPALADIPELTEFIVADVDLLGPTN 334
Score = 213 (80.0 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 65/196 (33%), Positives = 97/196 (49%)
Query: 170 CKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
CK C + A AH GN+ V+CTKV +I LDP TL+ C + YWR+PF A
Sbjct: 256 CKDDLVCLPKTVA-KAH--GNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPA 312
Query: 230 LHTSRQLVEYIVLDV--------KVASTENDTILS-------TRTHLGHLLILGDYAIGY 274
L +L E+IV DV K A + + I S TRTHLG +L G+ + Y
Sbjct: 313 LADIPELTEFIVADVDLLGPTNGKYALADVELIKSSDGSTHLTRTHLGGILNAGNTVLAY 372
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGA 334
L N N+ + + P+ + +KK+Y + ++K+R +LK + M+
Sbjct: 373 HLAVTNFNNEVYDTLREDSIPEVVIVKKTYPQ-TKKKNRNW---RLKTIGMQKAEDVKKQ 428
Query: 335 DREKVNNEYEEFLRDL 350
D E+ +YE FL++L
Sbjct: 429 DIERQERDYELFLQNL 444
Score = 106 (42.4 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 10 VRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
+ T+ CC+CG+ NA+ MC+ C+K DIT + + + + C
Sbjct: 18 IASTILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHC 62
>ZFIN|ZDB-GENE-050320-149 [details] [associations]
symbol:nmd3 "NMD3 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0015031 "protein transport" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] Pfam:PF04981 ZFIN:ZDB-GENE-050320-149 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0015031 CTD:51068 eggNOG:COG1499
GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
HOVERGEN:HBG055100 KO:K07562 OMA:PVCKDNV OrthoDB:EOG43BMNM
InterPro:IPR007064 EMBL:BC090467 IPI:IPI00507258
RefSeq:NP_001013587.1 UniGene:Dr.79205 STRING:Q5BLF0
Ensembl:ENSDART00000021299 GeneID:541444 KEGG:dre:541444
InParanoid:Q5BLF0 NextBio:20879251 Bgee:Q5BLF0 Uniprot:Q5BLF0
Length = 505
Score = 251 (93.4 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 53/150 (35%), Positives = 86/150 (57%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI KH +IK++ GI+F+++ + HA K V+F+ VP +S+ ++L+S S
Sbjct: 174 QLILKHKLHQNTVRIKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHS 233
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
K T SVEI + A +LGN+G +C +VT+SI L+DP TL+
Sbjct: 234 NTYNYKSTFSVEIVPVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAE 293
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
+D +WR PF +L + RQL E+I++D+ +
Sbjct: 294 VDGSTFWRHPFNSLCSPRQLEEFIIMDIDI 323
Score = 137 (53.3 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 36/93 (38%), Positives = 49/93 (52%)
Query: 258 RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
RT +GHLL +GD +G+D AN ND L PD + IKKSY ++ K +
Sbjct: 362 RTFMGHLLNIGDLVLGFDFANANINDEFLNKMNPQHVPDVVLIKKSY---DRMKRARKRV 418
Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
KLK ++ E D + D E+ +Y EFL DL
Sbjct: 419 WKLKEMDREKDAAD--TDDER---QYTEFLEDL 446
Score = 119 (46.9 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 42/159 (26%), Positives = 78/159 (49%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIV 73
+ CC CG+ + N +NMCV+CL+++VDI+E + K I C + + L ++ +
Sbjct: 15 ILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCAL- 73
Query: 74 EQSDVV------MSRNITCVNLVP-GFMQTGPDHWDAAVQLEL-IQKHDAPARATKIKKM 125
E +++ + +++ V L+ GF+ T P H ++++L IQK I +
Sbjct: 74 ESRELLALCLKKLKASMSKVRLIDAGFLWTEP-H-SKRIKIKLTIQKE---VMNGAILQQ 128
Query: 126 DHGIEFFFSGRS----HAVKFVEFVGEVVPAQSR--HEK 158
+EF G+ H V+ +F VV + + H+K
Sbjct: 129 VFTVEFVVQGQMCEDCHRVEAKDFWKAVVQVRQKTVHKK 167
>WB|WBGene00012030 [details] [associations]
symbol:T25G3.3 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0071688 "striated muscle myosin
thick filament assembly" evidence=IMP] Pfam:PF04981 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0016246 GO:GO:0071688 GO:GO:0010171 GO:GO:0040011
GO:GO:0000003 EMBL:Z72516 eggNOG:COG1499
GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152 KO:K07562
InterPro:IPR007064 PIR:T25285 RefSeq:NP_492114.2
ProteinModelPortal:Q22792 STRING:Q22792 PaxDb:Q22792
EnsemblMetazoa:T25G3.3.1 EnsemblMetazoa:T25G3.3.2 GeneID:3565801
KEGG:cel:CELE_T25G3.3 UCSC:T25G3.3.1 CTD:3565801 WormBase:T25G3.3
InParanoid:Q22792 OMA:LTIQKEX NextBio:957909 Uniprot:Q22792
Length = 513
Score = 262 (97.3 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 70/215 (32%), Positives = 110/215 (51%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQL-------- 107
+IK+K+T+QKEV I++Q+ VV+ + D W A VQ+
Sbjct: 107 RIKVKITIQKEVFTNTILQQA-VVVEFTVHSQLCDDCRRAEAKDFWRACVQVRQRAEFKK 165
Query: 108 ------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLV 161
+L+ KH A T +K + GI+F+F+ + A KFV+F+ V+P + + ++LV
Sbjct: 166 TLFYLEQLLLKHSAHKECTGVKPVPTGIDFYFAKQQEARKFVDFLMTVLPCKYHYAQELV 225
Query: 162 SRGTKSRNCKCKYTCSVEISAISAHNL-----------GNLGPFVICTKVTNSIALLDPF 210
S TK+ K+T VEI I N+ GN+ V+C +V+N I L+DP
Sbjct: 226 SHDTKNNTYDYKHTFCVEIVPICRDNIVCLPKKQAQQYGNMSQIVLCLRVSNVITLIDPN 285
Query: 211 TLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK 245
L+ + A +WR PF +L +QL E+ VLDV+
Sbjct: 286 NLQLVDVQATNFWREPFDSLCGPKQLTEFYVLDVE 320
Score = 126 (49.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 57/212 (26%), Positives = 97/212 (45%)
Query: 157 EKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSI--ALLDPFTLRH 214
+KQ G S+ C +V I+ I +NL + V T +L P L
Sbjct: 257 KKQAQQYGNMSQIVLCLRVSNV-ITLIDPNNLQLVD--VQATNFWREPFDSLCGPKQLTE 313
Query: 215 CY-LDADQYWRSPFKALH--TSR--QLVE-YIVLDVKVASTENDTILSTRTHLGHLLILG 268
Y LD + KA H S+ +L + ++V +V ++ + LS RTH+GHLL G
Sbjct: 314 FYVLDVEPVNNFERKAGHGYVSKKHELADVWLVRSDQVGMSDAQS-LSARTHIGHLLSPG 372
Query: 269 DYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
D + +D+ N N+ + PD I ++K + ++ +R ++ KLK L VD
Sbjct: 373 DLVMAFDMKNCNVNNATFDAMNIDNVPDAIIVRKVF-DRTRRTAKRQW--KLKRLV--VD 427
Query: 329 GSKCGADREKVNNEYEEFLRDLMASVTDKEDV 360
G+ G + V +E++ F+ D+ +E +
Sbjct: 428 GNIVGNETASVADEFQGFMEDIEEDALMREKI 459
Score = 116 (45.9 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
++CC+CG+ + N +NMC CL+S VDITE + + I C
Sbjct: 13 IACCECGVAIEPNPANMCSGCLRSRVDITEGITRQCTIYMC 53
>MGI|MGI:2140103 [details] [associations]
symbol:Nmd3 "NMD3 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000055 "ribosomal large subunit export from
nucleus" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=ISO]
MGI:MGI:2140103 Pfam:PF04981 GO:GO:0005737 GO:GO:0005654
GO:GO:0005730 GO:GO:0015031 CTD:51068 eggNOG:COG1499
GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
HOVERGEN:HBG055100 KO:K07562 OMA:PVCKDNV OrthoDB:EOG43BMNM
InterPro:IPR007064 EMBL:AK034772 EMBL:AK088667 EMBL:AK143289
EMBL:AK145248 EMBL:AK166283 EMBL:BC003842 IPI:IPI00116309
IPI:IPI00881976 RefSeq:NP_598548.1 UniGene:Mm.21062
UniGene:Mm.439485 ProteinModelPortal:Q99L48 STRING:Q99L48
PhosphoSite:Q99L48 PaxDb:Q99L48 PRIDE:Q99L48
Ensembl:ENSMUST00000029358 GeneID:97112 KEGG:mmu:97112
UCSC:uc008pmk.1 UCSC:uc008pml.1 InParanoid:Q99L48 NextBio:352527
Bgee:Q99L48 CleanEx:MM_NMD3 Genevestigator:Q99L48 Uniprot:Q99L48
Length = 503
Score = 257 (95.5 bits), Expect = 5.0e-20, P = 5.0e-20
Identities = 68/215 (31%), Positives = 114/215 (53%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
++K+KLT+QKEV+ G I++Q VV + ++ C + D W A +Q+
Sbjct: 109 RLKVKLTIQKEVMNGAILQQVFVVDYVVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLH 165
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI K+ +IK++ G++F++S + HA K VEF+ +VP + + ++
Sbjct: 166 KKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQR 225
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+S+ S K T SVEI I A +LGN+ IC +VT++I L+D
Sbjct: 226 LISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMSQICICIRVTSAIHLID 285
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLD 243
P TL+ +D + +W PF +L +QL E+IV++
Sbjct: 286 PNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVIE 320
Score = 151 (58.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 55/193 (28%), Positives = 89/193 (46%)
Query: 162 SRGTKSRNCKC-KYTCSVEISAISAHNLGNLGPFVICTKVTNSIA---LLDPFTLRHCYL 217
S G S+ C C + T ++ + + + ++ + NS+ L+ F + C
Sbjct: 264 SLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVIECST 323
Query: 218 DADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLH 277
D RS + + + + + + K + D RTHLGHLL GD +G+DL
Sbjct: 324 VRDLK-RSAGAGVISKKHTLGEVWIQ-KTSEMNTDKQYFCRTHLGHLLNPGDLVLGFDLA 381
Query: 278 EANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADRE 337
N ND + S PD + IKKSY ++ +R+ R+ N KLK E+ D D E
Sbjct: 382 NCNLNDEYVNKMNSDRVPDVVLIKKSY-DRTKRQRRR-NW-KLK--ELARDRENMDTDDE 436
Query: 338 KVNNEYEEFLRDL 350
+ +Y++FL DL
Sbjct: 437 R---QYQDFLEDL 446
Score = 125 (49.1 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 38/157 (24%), Positives = 78/157 (49%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PKIKLKLTVQ 64
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C P ++ ++
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALE 74
Query: 65 KEVLEGVIVEQSDVVMSRNITCVNLVP-GFMQTGPDHWDAAVQLELIQKHDAPARATKIK 123
L + +++ +S+ V LV GF+ T P V+L + ++ A ++
Sbjct: 75 SRELLALCLKKIKAPLSK----VRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVF 130
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSR--HEK 158
+D+ ++ G H V+ +F V+ + + H+K
Sbjct: 131 VVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKK 167
>RGD|1308468 [details] [associations]
symbol:Nmd3 "NMD3 homolog (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] RGD:1308468 Pfam:PF04981 GO:GO:0005730
EMBL:CH473976 CTD:51068 eggNOG:COG1499 GeneTree:ENSGT00390000005104
HOGENOM:HOG000168152 HOVERGEN:HBG055100 KO:K07562 OrthoDB:EOG43BMNM
InterPro:IPR007064 EMBL:BC161998 IPI:IPI00762953
RefSeq:NP_001101152.1 UniGene:Rn.61090 STRING:B1WC44
Ensembl:ENSRNOT00000012417 Ensembl:ENSRNOT00000064244 GeneID:310512
KEGG:rno:310512 UCSC:RGD:1308468 NextBio:662089
Genevestigator:B1WC44 Uniprot:B1WC44
Length = 503
Score = 222 (83.2 bits), Expect = 9.7e-16, P = 9.7e-16
Identities = 50/150 (33%), Positives = 83/150 (55%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI K+ +IK++ G++F++S + HA K VEF+ VP + + ++L+S+ S
Sbjct: 174 QLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQGTVPCRYKSSQRLISQDIHS 233
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
K T SVEI I A +LGN+ IC +VT++I L+DP TL+
Sbjct: 234 NTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICICIRVTSAIHLIDPNTLQVAD 293
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
+D + +W PF +L +QL E+IV++ +
Sbjct: 294 IDGNTFWSHPFNSLCHPKQLEEFIVIECSI 323
Score = 162 (62.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 57/203 (28%), Positives = 94/203 (46%)
Query: 162 SRGTKSRNCKC-KYTCSVEISAISAHNLGNLGPFVICTKVTNSIA---LLDPFTLRHCYL 217
S G ++ C C + T ++ + + + ++ + NS+ L+ F + C +
Sbjct: 264 SLGNMNQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVIECSI 323
Query: 218 DADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLH 277
D + + L E + K + + D RTHLGHLL GD +G+DL
Sbjct: 324 VRDLKRNAGAGVISKKHTLGEVWIQ--KTSEMDTDKQYFCRTHLGHLLNPGDLVLGFDLA 381
Query: 278 EANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADRE 337
N ND + KS PD + IKKSY ++ +R+ R+ N KLK E+ D D E
Sbjct: 382 NCNLNDEHVNKMKSDRVPDVVLIKKSY-DRTKRQRRR-NW-KLK--ELARDREDMDTDDE 436
Query: 338 KVNNEYEEFLRDLMASVTDKEDV 360
+ +Y++FL DL T +++V
Sbjct: 437 R---QYQDFLEDLEEDETIRKNV 456
Score = 125 (49.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 38/157 (24%), Positives = 78/157 (49%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PKIKLKLTVQ 64
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C P ++ ++
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALE 74
Query: 65 KEVLEGVIVEQSDVVMSRNITCVNLVP-GFMQTGPDHWDAAVQLELIQKHDAPARATKIK 123
L + +++ +S+ V LV GF+ T P V+L + ++ A ++
Sbjct: 75 SRELLALCLKKIKAPLSK----VRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVF 130
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSR--HEK 158
+D+ ++ G H V+ +F V+ + + H+K
Sbjct: 131 VVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKK 167
>UNIPROTKB|I3LDB7 [details] [associations]
symbol:NMD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] Pfam:PF04981
GO:GO:0005730 GeneTree:ENSGT00390000005104 OMA:PVCKDNV
InterPro:IPR007064 EMBL:CU928899 Ensembl:ENSSSCT00000024911
Uniprot:I3LDB7
Length = 507
Score = 195 (73.7 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 44/130 (33%), Positives = 72/130 (55%)
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 194 GLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDN 253
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A +LGN+ +C +VT+ I L+DP TL+ +D + +W PF +L +QL
Sbjct: 254 VVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWTHPFNSLCHPKQL 313
Query: 237 VEYIVLDVKV 246
E+IV++ +
Sbjct: 314 EEFIVMECSI 323
Score = 162 (62.1 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 62/213 (29%), Positives = 98/213 (46%)
Query: 162 SRGTKSRNCKCKYTCSVEISAISAHNL--GNLGPFVICTKVTNSIA---LLDPFTLRHCY 216
S G ++ C C SV I I + L ++ T NS+ L+ F + C
Sbjct: 264 SLGNMNQICVCIRVTSV-IHLIDPNTLQVADIDGNTFWTHPFNSLCHPKQLEEFIVMECS 322
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDL 276
+ D RS + + + + + + K + D RTHLGHLL GD +G+DL
Sbjct: 323 IVRDLK-RSAGAGMISKKHTLGEVWVQ-KTSEMNTDKQYFCRTHLGHLLNPGDLVLGFDL 380
Query: 277 HEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADR 336
N ND + KS PD + IKK+Y ++ +R+ R+ N KLK E+ D D
Sbjct: 381 ANCNLNDEHVNKMKSDRIPDVVLIKKNY-DRTKRQRRR-NW-KLK--ELARDRENMDTDN 435
Query: 337 EKVNNEYEEFLRDLMASVTDKEDV-----PSVP 364
E+ +Y++FL DL +++V P++P
Sbjct: 436 ER---QYQDFLEDLEEDEAIRKNVNIYRDPTIP 465
Score = 118 (46.6 bits), Expect = 7.6e-17, Sum P(2) = 7.6e-17
Identities = 38/158 (24%), Positives = 76/158 (48%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PKIKLKLTVQ 64
+ CC CG+ + N +N+CV CL+S+VDI++ + K +I+ C P ++ ++
Sbjct: 15 ILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 65 KEVLEGVIVEQSDVVMSRNITCVNLVPG-FMQTGPDHWDAAVQLELIQKHDAPARATKIK 123
L + +++ +S+ V LV F+ T P V+L + ++ A ++
Sbjct: 75 SRELLALCLKKIKAPLSK----VRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVF 130
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSR--HEKQ 159
+D+ ++ G H V+ +F VV + + H +Q
Sbjct: 131 VVDYVVQSQMCGDCHRVEAKDFWKAVVQVRQKSYHIRQ 168
>UNIPROTKB|Q96D46 [details] [associations]
symbol:NMD3 "60S ribosomal export protein NMD3"
species:9606 "Homo sapiens" [GO:0015031 "protein transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Pfam:PF04981 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0015031 EMBL:CH471052 CTD:51068
eggNOG:COG1499 HOGENOM:HOG000168152 HOVERGEN:HBG055100 KO:K07562
InterPro:IPR007064 EMBL:AF132941 EMBL:BC013317 IPI:IPI00790937
RefSeq:NP_057022.2 UniGene:Hs.598836 ProteinModelPortal:Q96D46
DIP:DIP-53427N IntAct:Q96D46 STRING:Q96D46 PhosphoSite:Q96D46
DMDM:74731412 PaxDb:Q96D46 PRIDE:Q96D46 DNASU:51068
Ensembl:ENST00000351193 Ensembl:ENST00000460469 GeneID:51068
KEGG:hsa:51068 UCSC:uc003feb.1 GeneCards:GC03P160822
H-InvDB:HIX0003824 HGNC:HGNC:24250 HPA:HPA035019 MIM:611021
neXtProt:NX_Q96D46 PharmGKB:PA134884140 InParanoid:Q96D46
PhylomeDB:Q96D46 GenomeRNAi:51068 NextBio:53671 ArrayExpress:Q96D46
Bgee:Q96D46 CleanEx:HS_NMD3 Genevestigator:Q96D46 Uniprot:Q96D46
Length = 503
Score = 217 (81.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 49/150 (32%), Positives = 82/150 (54%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI K+ +IK++ G++F++S + HA K VEF+ VP + + ++L+S+ S
Sbjct: 174 QLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHS 233
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
K T SVEI I A +LGN+ +C +VT++I L+DP TL+
Sbjct: 234 NTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVAD 293
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
+D +W PF +L +QL E+IV++ +
Sbjct: 294 IDGSTFWSHPFNSLCHPKQLEEFIVMECSI 323
Score = 152 (58.6 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 53/193 (27%), Positives = 90/193 (46%)
Query: 162 SRGTKSRNCKC-KYTCSVEISAISAHNLGNLGPFVICTKVTNSIA---LLDPFTLRHCYL 217
S G ++ C C + T ++ + + + ++ + NS+ L+ F + C +
Sbjct: 264 SLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLEEFIVMECSI 323
Query: 218 DADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLH 277
D R+ + + + + + + K + D RTHLGHLL GD +G+DL
Sbjct: 324 VQD-IKRAAGAGMISKKHTLGEVWVQ-KTSEMNTDKQYFCRTHLGHLLNPGDLVLGFDLA 381
Query: 278 EANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADRE 337
N ND + S PD + IKKSY ++ +R+ R+ N KLK L E + D E
Sbjct: 382 NCNLNDEHVNKMNSDRVPDVVLIKKSY-DRTKRQRRR-NW-KLKELARERENMD--TDDE 436
Query: 338 KVNNEYEEFLRDL 350
+ +Y++FL DL
Sbjct: 437 R---QYQDFLEDL 446
Score = 127 (49.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 38/157 (24%), Positives = 78/157 (49%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PKIKLKLTVQ 64
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C P ++ ++
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 65 KEVLEGVIVEQSDVVMSRNITCVNLVP-GFMQTGPDHWDAAVQLELIQKHDAPARATKIK 123
L + +++ +S+ V LV GF+ T P V+L + ++ A ++
Sbjct: 75 SRELLALCLKKIKAPLSK----VRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVF 130
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSR--HEK 158
+D+ ++ G H V+ +F V+ + + H+K
Sbjct: 131 VVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKK 167
>UNIPROTKB|C9JA08 [details] [associations]
symbol:NMD3 "60S ribosomal export protein NMD3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Pfam:PF04981 GO:GO:0005730
HOGENOM:HOG000168152 OMA:PVCKDNV InterPro:IPR007064 HGNC:HGNC:24250
EMBL:AC021649 EMBL:AC108738 IPI:IPI00797406
ProteinModelPortal:C9JA08 STRING:C9JA08 PRIDE:C9JA08
Ensembl:ENST00000472947 UCSC:uc003fec.3 ArrayExpress:C9JA08
Bgee:C9JA08 Uniprot:C9JA08
Length = 529
Score = 217 (81.4 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 49/150 (32%), Positives = 82/150 (54%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI K+ +IK++ G++F++S + HA K VEF+ VP + + ++L+S+ S
Sbjct: 174 QLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHS 233
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
K T SVEI I A +LGN+ +C +VT++I L+DP TL+
Sbjct: 234 NTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVAD 293
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
+D +W PF +L +QL E+IV++ +
Sbjct: 294 IDGSTFWSHPFNSLCHPKQLEEFIVMECSI 323
Score = 152 (58.6 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 53/193 (27%), Positives = 90/193 (46%)
Query: 162 SRGTKSRNCKC-KYTCSVEISAISAHNLGNLGPFVICTKVTNSIA---LLDPFTLRHCYL 217
S G ++ C C + T ++ + + + ++ + NS+ L+ F + C +
Sbjct: 264 SLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLEEFIVMECSI 323
Query: 218 DADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLH 277
D R+ + + + + + + K + D RTHLGHLL GD +G+DL
Sbjct: 324 VQD-IKRAAGAGMISKKHTLGEVWVQ-KTSEMNTDKQYFCRTHLGHLLNPGDLVLGFDLA 381
Query: 278 EANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADRE 337
N ND + S PD + IKKSY ++ +R+ R+ N KLK L E + D E
Sbjct: 382 NCNLNDEHVNKMNSDRVPDVVLIKKSY-DRTKRQRRR-NW-KLKELARERENMD--TDDE 436
Query: 338 KVNNEYEEFLRDL 350
+ +Y++FL DL
Sbjct: 437 R---QYQDFLEDL 446
Score = 127 (49.8 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 38/157 (24%), Positives = 78/157 (49%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PKIKLKLTVQ 64
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C P ++ ++
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 65 KEVLEGVIVEQSDVVMSRNITCVNLVP-GFMQTGPDHWDAAVQLELIQKHDAPARATKIK 123
L + +++ +S+ V LV GF+ T P V+L + ++ A ++
Sbjct: 75 SRELLALCLKKIKAPLSK----VRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVF 130
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSR--HEK 158
+D+ ++ G H V+ +F V+ + + H+K
Sbjct: 131 VVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQKTLHKK 167
>UNIPROTKB|Q08DS5 [details] [associations]
symbol:NMD3 "60S ribosomal export protein NMD3"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
Pfam:PF04981 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0015031 EMBL:BC123588 IPI:IPI00711949 RefSeq:NP_001068888.1
UniGene:Bt.27265 STRING:Q08DS5 PRIDE:Q08DS5
Ensembl:ENSBTAT00000021594 GeneID:509871 KEGG:bta:509871 CTD:51068
eggNOG:COG1499 GeneTree:ENSGT00390000005104 HOGENOM:HOG000168152
HOVERGEN:HBG055100 InParanoid:Q08DS5 KO:K07562 OMA:PVCKDNV
OrthoDB:EOG43BMNM NextBio:20869176 ArrayExpress:Q08DS5
InterPro:IPR007064 Uniprot:Q08DS5
Length = 503
Score = 215 (80.7 bits), Expect = 6.3e-15, P = 6.3e-15
Identities = 49/150 (32%), Positives = 82/150 (54%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI K+ +IK++ G++F++S + HA K VEF+ VP + + ++L+S+ S
Sbjct: 174 QLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHS 233
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
K T SVEI I A +LGN+ +C +VT+ I L+DP TL+
Sbjct: 234 NTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVAD 293
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
+D + +W PF +L +QL E+IV++ +
Sbjct: 294 IDGNTFWSHPFNSLCHPKQLEEFIVMECSI 323
Score = 158 (60.7 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 59/194 (30%), Positives = 90/194 (46%)
Query: 162 SRGTKSRNCKCKYTCSVEISAISAHNL--GNLGPFVICTKVTNSIA---LLDPFTLRHCY 216
S G ++ C C SV I I + L ++ + NS+ L+ F + C
Sbjct: 264 SLGNMNQICVCIRVTSV-IHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQLEEFIVMECS 322
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDL 276
+ D RS + + + + + + K + D RTHLGHLL GD +G+DL
Sbjct: 323 IVQD-IKRSAGAGMISKKHTLGEVWVQ-KTSEMNTDKQYFCRTHLGHLLNPGDLVLGFDL 380
Query: 277 HEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADR 336
N ND + KS PD + IKKSY ++ +R+ R+ N KLK E+ D D
Sbjct: 381 VNCNLNDEHVNKMKSDRVPDVVLIKKSY-DRTRRQRRR-NW-KLK--ELARDRENTDTDD 435
Query: 337 EKVNNEYEEFLRDL 350
E+ +Y++FL DL
Sbjct: 436 ER---QYQDFLEDL 446
Score = 117 (46.2 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 37/154 (24%), Positives = 75/154 (48%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIV 73
+ CC CG+ + N +N+CV CL+S+VDI++ + K +I+ C + + ++ +
Sbjct: 15 ILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVQCAL- 73
Query: 74 EQSDVV------MSRNITCVNLVPG-FMQTGPDHWDAAVQLELIQKHDAPARATKIKKMD 126
E D++ + ++ V LV F+ T P V+L + ++ A ++ +D
Sbjct: 74 ESRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVD 133
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSR--HEK 158
+ ++ G H V+ +F VV + + H+K
Sbjct: 134 YVVQPQMCGDCHRVEAKDFWKAVVQVRQKTLHKK 167
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 386 374 0.00087 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 612 (65 KB)
Total size of DFA: 248 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.53u 0.10s 32.63t Elapsed: 00:00:01
Total cpu time: 32.54u 0.10s 32.64t Elapsed: 00:00:01
Start: Sat May 11 02:18:31 2013 End: Sat May 11 02:18:32 2013