BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048420
(386 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224080157|ref|XP_002306035.1| predicted protein [Populus trichocarpa]
gi|222848999|gb|EEE86546.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/513 (46%), Positives = 301/513 (58%), Gaps = 129/513 (25%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M + AG+F V +T+ CCKCGI M NA+NMCV CL+SEVDITE L+K+ + CP
Sbjct: 1 MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCPEC 60
Query: 56 --------------------------------------------------KIKLKLTVQK 65
+IKL++ VQK
Sbjct: 61 DTYLDPPSTRIRAQLESRELMAFCLKKLKLKSTGVILVNAEFIWTEPHSKRIKLRVRVQK 120
Query: 66 EVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------EL 109
EVL G I+EQ+ V+ + ++ C + +Q PD W A VQL +L
Sbjct: 121 EVLHGAILEQAYVIEYVQQDQMCDSCTR--VQANPDQWVAGVQLRQHVAHRRTFFYLEQL 178
Query: 110 IQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRN 169
I KHDA ARA KIK+MDHGI+FFF+ RSH VKFV+FVG+V P +SR++KQLVS TKS N
Sbjct: 179 ILKHDAAARAIKIKQMDHGIDFFFANRSHGVKFVDFVGKVAPVKSRNDKQLVSHDTKSNN 238
Query: 170 CKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLD 218
K+T SVEIS I A +LGNLGP VIC+KVTNSIALLDPFTLRHC+LD
Sbjct: 239 YNYKHTFSVEISPICREDLVCLPPRVAVSLGNLGPLVICSKVTNSIALLDPFTLRHCFLD 298
Query: 219 ADQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTIL 255
ADQYWR+PFK+L TSRQLVEYIV DV S E NDT+
Sbjct: 299 ADQYWRTPFKSLLTSRQLVEYIVFDVDFVSPEVNIGGSRYALADATVARMSDFGKNDTMF 358
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
+ +THLGH+L GDYA+GYDLH AN ND+EL+ YK+LV P+ I +KKSY+EK QRK KP
Sbjct: 359 NIKTHLGHILKPGDYALGYDLHGANSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKP 418
Query: 316 NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MAS 353
KLK L MEVD ++ D+EK+N+EYE+FLRDL MAS
Sbjct: 419 RSWKLKSLNMEVDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQPSEMAS 478
Query: 354 VTDKEDVPSVPLDYLLADLDSSDKEEGDDSMIE 386
+TD ED+PS+PL+ LLADL+ +D E+ D+ M E
Sbjct: 479 MTDGEDIPSIPLEELLADLEINDAEDEDEGMGE 511
>gi|225430590|ref|XP_002265288.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera]
Length = 510
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 250/512 (48%), Positives = 301/512 (58%), Gaps = 128/512 (25%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M + AG+F V +TV CCKCGI M NA+NMCV CL+SE+DITE LQKH I CP
Sbjct: 1 MAEEAGMFMVHQTVGSVLCCKCGIPMTPNAANMCVKCLRSEIDITEGLQKHVTIVHCPEC 60
Query: 56 -------------------------------------------------KIKLKLTVQKE 66
+IK+KL VQKE
Sbjct: 61 DTYLQPPKTWIKAQLESKELLTFCVKRLKNLNKVRLIHAEFIWTEPHSKRIKVKLRVQKE 120
Query: 67 VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
VL G I+EQ+ +V + + C + +Q PD W A+VQL +LI
Sbjct: 121 VLNGAILEQAYIVEFVQQEHMCESC--SRVQANPDQWVASVQLRQHVPHRRTFFYLEQLI 178
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
+HDA RA KIK+MD GI+FFF+ RSH VKFVEF+G+V P++SRH+KQLVS TKS N
Sbjct: 179 LRHDAAGRAIKIKQMDQGIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNY 238
Query: 171 KCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
KYT SVEI I A +LGNLGP VICTKV+N+IALLDPFTLRHC+LDA
Sbjct: 239 NYKYTFSVEICPICREDLICLPPKVAVSLGNLGPLVICTKVSNNIALLDPFTLRHCFLDA 298
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
DQYWRS FKAL +SRQLVEYIVLDV++ S+E NDTI +
Sbjct: 299 DQYWRSSFKALLSSRQLVEYIVLDVEIVSSEVNVGGSKYALADAQVARVSDFGKNDTIFN 358
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
RTHLGHLL GD+A+GYD++ AN ND+ELE Y+ V P+ I IKKSY+EK QRK KP
Sbjct: 359 IRTHLGHLLNPGDHALGYDVYAANSNDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPR 418
Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASV 354
KLK L MEVD SK AD+EK+N EYE FLRDL MAS+
Sbjct: 419 SWKLKSLNMEVDDSKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASM 478
Query: 355 TDKEDVPSVPLDYLLADLDSSDKEEGDDSMIE 386
TD ED+PSVPL+ LLADLD S++E+GD SM E
Sbjct: 479 TDGEDLPSVPLEELLADLDLSEEEDGDVSMRE 510
>gi|255585695|ref|XP_002533531.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
gi|223526598|gb|EEF28848.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
Length = 511
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 247/511 (48%), Positives = 287/511 (56%), Gaps = 125/511 (24%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M + AG+F VR+T+ CCKCGI M NA NMCV CL+SEVDITE L+K I CP
Sbjct: 1 MAEEAGMFMVRQTIGSVLCCKCGIPMQPNAVNMCVKCLRSEVDITEGLKKRVIIKHCPEC 60
Query: 56 --------------------------------------------------KIKLKLTVQK 65
+IKL+ VQK
Sbjct: 61 DTYLQPPYTRIKAQLESKELMTFCVRTLDLKHAGVTLVHAEFIWTEPHSKRIKLRCRVQK 120
Query: 66 EVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQ 111
EV G ++EQS +V + +Q PD W A+VQL +LI
Sbjct: 121 EVHRGAVLEQSYIVEFVQQESMCESCSRVQANPDQWVASVQLRQHVSHRRTFFYLEQLIL 180
Query: 112 KHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCK 171
KHDA ARA KIK+MD GI+FFF RSH VKFVEF+G+V P +SRH+KQLVS KS N
Sbjct: 181 KHDAAARAIKIKQMDQGIDFFFGNRSHGVKFVEFLGKVAPVRSRHDKQLVSHDPKSNNYN 240
Query: 172 CKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDAD 220
KYT SVEIS I A +LGNLGP VICTKVTNSIALLDP TLRHCYLD D
Sbjct: 241 YKYTFSVEISPICREDLVCLPPKVAVSLGNLGPLVICTKVTNSIALLDPLTLRHCYLDGD 300
Query: 221 QYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILST 257
QYWRS FK+L TSRQLVEYIVLDV + S E NDTI
Sbjct: 301 QYWRSSFKSLLTSRQLVEYIVLDVDIISPEVNIGSSKYAMAEVQVARLSDFGKNDTIFFI 360
Query: 258 RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
+THLGH+L GD A+GYDL+ AN NDIEL+ YK LV P+ I IKKSY+EK QRK KP
Sbjct: 361 KTHLGHILKPGDQALGYDLYGANSNDIELDKYKGLVLPEAILIKKSYEEKRQRKRGKPRA 420
Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASVT 355
KLK LEMEVD S+ D+EK++ EYE+FLRDL MASVT
Sbjct: 421 WKLKSLEMEVDDSRGRNDQEKMDTEYEQFLRDLEENAELRFNVSLYRNKEYQPSEMASVT 480
Query: 356 DKEDVPSVPLDYLLADLDSSDKEEGDDSMIE 386
D EDVPS+PL+ LLADLD S+ E+ D M E
Sbjct: 481 DGEDVPSIPLEELLADLDISEMEDAADDMRE 511
>gi|224079509|ref|XP_002305882.1| predicted protein [Populus trichocarpa]
gi|222848846|gb|EEE86393.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 234/497 (47%), Positives = 290/497 (58%), Gaps = 129/497 (25%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M + AG+F V +T+ CCKCGI M NA+NMCV CL+SEVDITE L+K+ + CP
Sbjct: 1 MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCPEC 60
Query: 56 --------------------------------------------------KIKLKLTVQK 65
+IKL++ VQK
Sbjct: 61 DTYLDPPSTRIRAQLESRELMAFCLKKLKLKSTGVILVNAEFIWTEPHSKRIKLRVRVQK 120
Query: 66 EVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------EL 109
EVL G I+EQ+ V+ + ++ C + +Q PD W A VQL +L
Sbjct: 121 EVLHGAILEQAYVIEYVQQDQMCDSCTR--VQANPDQWVAGVQLRQHVAHRRTFFYLEQL 178
Query: 110 IQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRN 169
I KHDA ARA KIK+MDHGI+FFF+ RSH VKFV+FVG+V P +SR++KQLVS TKS N
Sbjct: 179 ILKHDAAARAIKIKQMDHGIDFFFANRSHGVKFVDFVGKVAPVKSRNDKQLVSHDTKSNN 238
Query: 170 CKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLD 218
K+T SVEIS I A +LGNLGP VIC+KVTNSIALLDPFTLRHC+LD
Sbjct: 239 YNYKHTFSVEISPICREDLVCLPPRVAVSLGNLGPLVICSKVTNSIALLDPFTLRHCFLD 298
Query: 219 ADQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTIL 255
ADQYWR+PFK+L TSRQLVEYIV DV S E NDT+
Sbjct: 299 ADQYWRTPFKSLLTSRQLVEYIVFDVDFVSPEVNIGGSRYALADATVARMSDFGKNDTMF 358
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
+ +THLGH+L GDYA+GYDLH AN ND+EL+ YK+LV P+ I +KKSY+EK QRK KP
Sbjct: 359 NIKTHLGHILKPGDYALGYDLHGANSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKP 418
Query: 316 NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MAS 353
KLK L MEVD ++ D+EK+N+EYE+FLRDL MAS
Sbjct: 419 RSWKLKSLNMEVDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQPSEMAS 478
Query: 354 VTDKEDVPSVPLDYLLA 370
+TD ED+PS+PL+ LLA
Sbjct: 479 MTDGEDIPSIPLEELLA 495
>gi|147798057|emb|CAN60703.1| hypothetical protein VITISV_003522 [Vitis vinifera]
Length = 594
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 236/490 (48%), Positives = 283/490 (57%), Gaps = 128/490 (26%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M + AG+F V +TV CCKCGI M NA+NMCV CL+SE+DITE LQKH I CP
Sbjct: 1 MAEEAGMFMVHQTVGSVLCCKCGIPMTPNAANMCVKCLRSEIDITEGLQKHVTIVHCPEC 60
Query: 56 -------------------------------------------------KIKLKLTVQKE 66
+IK+KL VQKE
Sbjct: 61 DTYLQPPKTWIKAQLESKELLTFCVKRLKNLNKVRLIHAEFIWTEPHSKRIKVKLRVQKE 120
Query: 67 VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
VL G I+EQ+ +V + + C + +Q PD W A+VQL +LI
Sbjct: 121 VLNGAILEQAYIVEFVQQEHMCESC--SRVQANPDQWVASVQLRQHVPHRRTFFYLEQLI 178
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
+HDA RA KIK+MD GI+FFF+ RSH VKFVEF+G+V P++SRH+KQLVS TKS N
Sbjct: 179 LRHDAAGRAIKIKQMDQGIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNY 238
Query: 171 KCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
KYT SVEI I A +LGNLGP VICTKV+N+IALLDPFTLRHC+LDA
Sbjct: 239 NYKYTFSVEICPICREDLICLPPKVAVSLGNLGPVVICTKVSNNIALLDPFTLRHCFLDA 298
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
DQYWRS FKAL +SRQLVEYIVLDV++ S+E NDTI +
Sbjct: 299 DQYWRSSFKALLSSRQLVEYIVLDVEIVSSEVNVGGSKYALADAQVARVSDFGKNDTIFN 358
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
RTHLGHLL GD+A+GYD++ AN ND+ELE Y+ V P+ I IKKSY+EK QRK KP
Sbjct: 359 IRTHLGHLLNPGDHALGYDVYAANSNDMELEKYRGFVLPEAILIKKSYEEKRQRKRGKPR 418
Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASV 354
KLK L MEVD SK AD+EK+N EYE FLRDL MAS+
Sbjct: 419 SWKLKSLNMEVDDSKGRADQEKMNTEYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASM 478
Query: 355 TDKEDVPSVP 364
TD ED+PSVP
Sbjct: 479 TDGEDLPSVP 488
>gi|449451509|ref|XP_004143504.1| PREDICTED: 60S ribosomal export protein NMD3-like [Cucumis sativus]
Length = 505
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 241/509 (47%), Positives = 291/509 (57%), Gaps = 127/509 (24%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M G+F+V++T+ CCKCGI M NA+NMCV CL SEVDITE LQK I CP
Sbjct: 1 MAAETGLFSVQQTIGTVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60
Query: 56 -------------------------------------------------KIKLKLTVQKE 66
+IK+KL VQKE
Sbjct: 61 ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120
Query: 67 VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
VL+G I+EQS V + ++ C + +Q PD W A+VQL +LI
Sbjct: 121 VLQGAILEQSYVAEYVVQDHLCESC--SRIQANPDQWVASVQLRQHVPHRRTFFFLEQLI 178
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
KH A A A +IK+MD GI+FFFS RSH VKFVEFVG+V P +SRH+KQLVS KS
Sbjct: 179 LKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIH 238
Query: 171 KCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
K+T SVEIS I A +LGNLGP VICTKVTN+IALLDPFTLRHC+LDA
Sbjct: 239 NHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDA 298
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
DQYWR+ F++L TSRQLVEY+VLD++ STE NDT+ S
Sbjct: 299 DQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFS 358
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
+THLGH+L GDYA+GYDL+ AN ND+ELE YK L P+ I IKKSY+EK QRKH KP
Sbjct: 359 IKTHLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKHGKPR 418
Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLM-------------------ASVTDK 357
KLK L M+VD K D K+N+EYE+FLRDL + +TD
Sbjct: 419 SWKLKSLSMDVD-DKTKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDG 477
Query: 358 EDVPSVPLDYLLADLDSSDKEEGDDSMIE 386
ED PSVPL+ LLADLD S+ EGDD+M E
Sbjct: 478 EDGPSVPLEELLADLDLSEG-EGDDAMNE 505
>gi|449504862|ref|XP_004162315.1| PREDICTED: 60S ribosomal export protein NMD3-like [Cucumis sativus]
Length = 505
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 240/509 (47%), Positives = 290/509 (56%), Gaps = 127/509 (24%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M G+F+V++T+ CCKCGI M NA+NMCV CL SEVDITE LQK I CP
Sbjct: 1 MAAETGLFSVQQTIGTVLCCKCGIPMAPNAANMCVKCLCSEVDITEGLQKQLTIMHCPDC 60
Query: 56 -------------------------------------------------KIKLKLTVQKE 66
+IK+KL VQKE
Sbjct: 61 ESYLQPPRTWIKAQLESKELLTFCIKRLRNLNKVKLVHAEFVWTEPHSKRIKVKLKVQKE 120
Query: 67 VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
VL+G I+EQS V + ++ C + +Q PD W A+VQL +LI
Sbjct: 121 VLQGAILEQSYVAEYVVQDHLCESC--SRIQANPDQWVASVQLRQHVPHRRTFFFLEQLI 178
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
KH A A A +IK+MD GI+FFFS RSH VKFVEFVG+V P +SRH+KQLVS KS
Sbjct: 179 LKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDPKSNIH 238
Query: 171 KCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
K+T SVEIS I A +LGNLGP VICTKVTN+IALLDPFTLRHC+LDA
Sbjct: 239 NHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALLDPFTLRHCFLDA 298
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
DQYWR+ F++L TSRQLVEY+VLD++ STE NDT+ S
Sbjct: 299 DQYWRTSFRSLLTSRQLVEYVVLDIENVSTEVNVAGSKYMLAYAQVARVSDFGRNDTMFS 358
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
+THLGH+L GDYA+GYDL+ AN ND+ELE YK L P+ I IKKSY+EK QRK KP
Sbjct: 359 IKTHLGHILNPGDYALGYDLYGANSNDMELEKYKGLELPEAILIKKSYEEKRQRKRGKPR 418
Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLM-------------------ASVTDK 357
KLK L M+VD K D K+N+EYE+FLRDL + +TD
Sbjct: 419 SWKLKSLSMDVD-DKTKVDENKMNSEYEQFLRDLEENPDLRFNISLYRNREYQPSEITDG 477
Query: 358 EDVPSVPLDYLLADLDSSDKEEGDDSMIE 386
ED PSVPL+ LLADLD S+ EGDD+M E
Sbjct: 478 EDGPSVPLEELLADLDLSEG-EGDDAMNE 505
>gi|356539804|ref|XP_003538383.1| PREDICTED: 60S ribosomal export protein NMD3-like [Glycine max]
Length = 510
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 230/508 (45%), Positives = 289/508 (56%), Gaps = 126/508 (24%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK- 56
M Q +G+F V +T+ CCKCGI M NA+NMCV CL+SEVDITE L K + CP+
Sbjct: 7 MAQESGMFMVNQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPEC 66
Query: 57 ----------IKLKL-----------TVQKEV---------------------------- 67
+KL+L +QK +
Sbjct: 67 ESYLQPPRSWVKLQLESKELLTFCLKKLQKNLNSNKVRLVHAEFIWTEPHSRRVKVKVKV 126
Query: 68 ----LEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL-------------- 107
L G I+EQS V + + C + +Q PD W AAVQL
Sbjct: 127 QKEVLNGAILEQSYPVEYVQQEHMCESC--SRVQANPDQWVAAVQLRQHVSHRRTFFYLE 184
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI KH A A A +IK+M+ GI+FFFS RSH VKFVEF+G+V P +SRH+KQLVS KS
Sbjct: 185 QLILKHGAAATAIRIKQMEQGIDFFFSNRSHGVKFVEFIGKVSPVRSRHDKQLVSHDPKS 244
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
N KYT SVEIS I A +LGN+GP VICTKVTNSIALLDPFTLRHC+
Sbjct: 245 NNYNYKYTFSVEISPICREDLICLPPRVAVSLGNIGPLVICTKVTNSIALLDPFTLRHCF 304
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDT 253
+DADQYWR+ FK+L TSRQLVEYIVLDV+ S+E NDT
Sbjct: 305 IDADQYWRTSFKSLLTSRQLVEYIVLDVETVSSEVTIGGTKYRLADAQVARVSDFGKNDT 364
Query: 254 ILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHR 313
I + +THLGHLL GDYA+GYDL+ AN ND+EL+ YK + P+ I IKKSY+EK+Q+K
Sbjct: 365 IFNIKTHLGHLLNPGDYALGYDLYGANSNDMELDKYKGHI-PEAILIKKSYEEKHQKKRG 423
Query: 314 KPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL---------MASVTDKEDVP--- 361
KP KLK LEMEVD K D +K+ +EYE+F++DL ++ +KE P
Sbjct: 424 KPRSWKLKSLEMEVD-DKGRVDEDKMVSEYEQFIQDLEENPEMRFNISLYRNKEYKPSDG 482
Query: 362 ---SVPLDYLLADLDSSDKEEGDDSMIE 386
SVPL+ LLADLD S+ E+ +D+M E
Sbjct: 483 DESSVPLEELLADLDLSEHEDEEDNMTE 510
>gi|356569760|ref|XP_003553064.1| PREDICTED: 60S ribosomal export protein NMD3-like [Glycine max]
Length = 510
Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 216/492 (43%), Positives = 274/492 (55%), Gaps = 118/492 (23%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK- 56
M Q +G+F V +T+ CCKCGI M NA+NMCV CL+SEVDITE L K + CP+
Sbjct: 7 MAQESGMFMVSQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPEC 66
Query: 57 ----------IKLKL-----------TVQKEV---------------------------- 67
+KL+L +QK +
Sbjct: 67 ESYLQPPRSWVKLQLESKELLTFCLKKLQKNLNSNKVRLVHAEFIWTEPHSRRVKVKVKV 126
Query: 68 ----LEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL-------------- 107
L G I+EQS V + + C + +Q PD W A+VQL
Sbjct: 127 QKEVLNGAILEQSYPVEYVQQEHMCESC--SRVQANPDQWVASVQLRQHVSHRRTFFYLE 184
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+LI KH A A A +IK+M+ GI+FFFS RSH VKFVEF+G+V P +SRH+KQLVS KS
Sbjct: 185 QLILKHGAAATAIRIKQMEQGIDFFFSNRSHGVKFVEFIGKVAPVRSRHDKQLVSHDPKS 244
Query: 168 RNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCY 216
N KYT SVEIS I A LGN+GP VICTKVT+SIALLDPFTLRHC+
Sbjct: 245 NNYNYKYTFSVEISPICREDLICLPPRVAAGLGNIGPLVICTKVTSSIALLDPFTLRHCF 304
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDT 253
+DADQYWR+ FK+L TSRQLVEYIVLDV+ S+E NDT
Sbjct: 305 IDADQYWRASFKSLLTSRQLVEYIVLDVETVSSEVTIGGTKYRLADAQVARVSDFGKNDT 364
Query: 254 ILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHR 313
I + +THLGHLL GDYA+GYDL+ AN ND+E + YK + P+ I IKKSY+EK+Q+K
Sbjct: 365 IFNIKTHLGHLLNPGDYALGYDLYGANSNDMEFDKYKGHI-PEAILIKKSYEEKHQKKRG 423
Query: 314 KPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDVPSVPLDYLLADLD 373
KP KLK LEMEVD K D++K+ +EYE+F++DL E+ P + + L
Sbjct: 424 KPRSWKLKSLEMEVD-DKGRVDQDKMVSEYEQFIQDL-------EENPEMRFNISLYRNK 475
Query: 374 SSDKEEGDDSMI 385
+GDDS +
Sbjct: 476 EYKPSDGDDSSV 487
>gi|357460773|ref|XP_003600668.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355489716|gb|AES70919.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 505
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 220/514 (42%), Positives = 277/514 (53%), Gaps = 143/514 (27%)
Query: 7 IFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESL------------------ 45
+F V +T+ CCKCGI M NA+NMCV CL+SEVDITE L
Sbjct: 1 MFKVHQTIGSVLCCKCGIRMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPECESYLQP 60
Query: 46 ----------------------QKHANITPCP--------------KIKLKLTVQKEVLE 69
QK+ NI ++K+K++VQKEV
Sbjct: 61 PRTWVKLQLESKELLTFCLKKLQKNMNINKAKLVNAEFIWTEPHSKRVKVKVSVQKEVYH 120
Query: 70 GVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKH 113
G I+EQS V + ++ C + + PD W AAVQL +LI +H
Sbjct: 121 GAILEQSYPVEYVQQDHMCESC--SRVAANPDQWIAAVQLRQHVSHRRTFYYLEQLILRH 178
Query: 114 DAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCK 173
A ARA +IK+MDHGI+F+FS RSH +KFVEFVG+V P +SR +KQLVS +KS N K
Sbjct: 179 GAAARAIRIKQMDHGIDFYFSNRSHGIKFVEFVGKVAPVKSRSDKQLVSHDSKSNNYNYK 238
Query: 174 YTCSVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQY 222
YT SVEIS I +A LGN+GP VICTKVTNSIALLDP TL+ +LDA+QY
Sbjct: 239 YTFSVEISPICREDLICLPPKAAAILGNIGPIVICTKVTNSIALLDPLTLKFGFLDAEQY 298
Query: 223 WRSPFKALHTSRQLVEYIVL-------------------DVKVAST----ENDTILSTRT 259
WR+ FK+L TSRQLVEYIVL D +VA +NDT+ S RT
Sbjct: 299 WRTSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGTKYALADAQVARVSDFGKNDTMFSIRT 358
Query: 260 HLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
HLGHLL GD A+GYDL+ AN ND+EL+ YK + P+ + IKKSY EK RK K
Sbjct: 359 HLGHLLKPGDNALGYDLYAANSNDMELDRYKGNI-PEVVLIKKSYPEK-----RKTRSFK 412
Query: 320 LKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASVTDK 357
LK + ME D K + +K + EYE FL++L +ASVTD
Sbjct: 413 LKRIPMEAD-DKIKVNEDKRSAEYELFLKELEENPELRFNISLYQNKDYQPSEVASVTDG 471
Query: 358 EDVPSVPLDYLLA---DLDSSDKE--EGDDSMIE 386
E+ PSVP D LL DLD S+ E +G+D+M E
Sbjct: 472 EEAPSVPWDELLTGLEDLDLSEGEGDDGEDNMAE 505
>gi|302774853|ref|XP_002970843.1| hypothetical protein SELMODRAFT_94368 [Selaginella moellendorffii]
gi|300161554|gb|EFJ28169.1| hypothetical protein SELMODRAFT_94368 [Selaginella moellendorffii]
Length = 516
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 197/498 (39%), Positives = 261/498 (52%), Gaps = 128/498 (25%)
Query: 1 MVQAAGIFAV---RKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M G F V + TV CC CG+ M N +NMCV+CL+S+VDITE LQKH + CP
Sbjct: 3 MAATDGTFLVPQTQGTVLCCLCGVAMSPNPANMCVSCLRSQVDITEGLQKHVTVLYCPEC 62
Query: 56 -------------------------------------------------KIKLKLTVQKE 66
++K+KL +QKE
Sbjct: 63 ERYLQPPRCWIKAGLESRELLTFCIKRLKNLNRVRLVDAGFVWTEPHSKRLKVKLKIQKE 122
Query: 67 VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
V+ G I+EQS V + ++ C PD W AAVQL +LI
Sbjct: 123 VMHGAILEQSYTVEFVVQDHMCEACSRA--AANPDQWVAAVQLRQKVDHKRTFFFLEQLI 180
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
KH A A A IK+M GI+FFFS RSHA+KFV+FV VVP +SR++KQLVS TK+ +
Sbjct: 181 LKHAAAALAINIKQMHEGIDFFFSSRSHALKFVDFVSSVVPVKSRNDKQLVSHDTKNNSY 240
Query: 171 KCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
K+T SVEI + A LGN+GP V+CT+V+N++ LLD TLR ++DA
Sbjct: 241 NYKFTFSVEICPVCKDDLVCLPQKVAAGLGNIGPLVLCTRVSNTLMLLDTQTLRSAFVDA 300
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVAS----------------------TENDTILST 257
QYWR P++AL +SRQLVEY+VLD+++ S +NDT+ +
Sbjct: 301 SQYWRVPYRALISSRQLVEYVVLDIEIDSPAESSSQKYVLAHAQVVRSSDFGKNDTMFNV 360
Query: 258 RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
RTHLGHLL GDYA+GYDL+ AN ND+ELE Y+ LV P+ + +KKSY+EK QR+ K P
Sbjct: 361 RTHLGHLLRPGDYALGYDLYGANTNDLELEKYRGLVLPEVVLVKKSYEEKRQRRRGKARP 420
Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL-----------------------MASV 354
KLK LEM+VD S G + K EYE F+ +L +A
Sbjct: 421 WKLKSLEMDVDESTGGKEESKRAVEYERFMEELEEDPEMRSKIALFKNPVAVAAPSIAGE 480
Query: 355 TDKEDVPSVPLDYLLADL 372
+ ++P VPL+ LL DL
Sbjct: 481 DEDGELPQVPLEELLGDL 498
>gi|302772306|ref|XP_002969571.1| hypothetical protein SELMODRAFT_91517 [Selaginella moellendorffii]
gi|300163047|gb|EFJ29659.1| hypothetical protein SELMODRAFT_91517 [Selaginella moellendorffii]
Length = 516
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 199/498 (39%), Positives = 261/498 (52%), Gaps = 128/498 (25%)
Query: 1 MVQAAGIFAV---RKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M G F V + TV CC CG+ M N +NMCV+CL+S+VDITE LQKH + CP
Sbjct: 3 MAATDGTFLVPQTQGTVLCCLCGVAMAPNPANMCVSCLRSQVDITEGLQKHVTVLYCPEC 62
Query: 56 -------------------------------------------------KIKLKLTVQKE 66
++K+KL +QKE
Sbjct: 63 ERYLQPPRCWIKAGLESRELLTFCIKRLKNLNRVRLVDAGFVWTEPHSKRLKVKLKIQKE 122
Query: 67 VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
V+ G I+EQS V + ++ C PD W AAVQL +LI
Sbjct: 123 VMHGAILEQSYTVEFVVQDHMCEACSRA--AANPDQWVAAVQLRQKVDHKRTFFFLEQLI 180
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
KH A A A IK+M GI+FFFS RSHA+KFV+FV VVP +SR++KQLVS TK+ +
Sbjct: 181 LKHAAAALAINIKQMHEGIDFFFSSRSHALKFVDFVSSVVPVKSRNDKQLVSHDTKNNSY 240
Query: 171 KCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
K+T SVEI + A LGN+GP V+CT+V+N++ LLD TLR ++DA
Sbjct: 241 NYKFTFSVEICPVCKDDLVCLPQKVAAGLGNIGPLVLCTRVSNTLMLLDTQTLRSAFVDA 300
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVAS----------------------TENDTILST 257
QYWR P++AL +SRQLVEY+VLD+++ S +NDT+ +
Sbjct: 301 SQYWRVPYRALISSRQLVEYVVLDIEIDSPAESSSQKYVLAHAQVVRSSDFGKNDTMFNV 360
Query: 258 RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
RTHLGHLL GDYA+GYDL+ AN ND+ELE Y+ LV P+ + +KKSY+EK Q++ K P
Sbjct: 361 RTHLGHLLRPGDYALGYDLYGANTNDLELEKYRGLVLPEVVLVKKSYEEKRQKRRGKARP 420
Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKE 358
KLK LEM+VD S G + K EYE F+ +L AS E
Sbjct: 421 WKLKSLEMDVDESTGGKEESKRAVEYERFMEELEEDPEMRSKIALFKNPVAVAASSIAGE 480
Query: 359 D----VPSVPLDYLLADL 372
D +P VPL+ LL DL
Sbjct: 481 DEDGELPQVPLEELLGDL 498
>gi|157276571|gb|ABV28352.1| nonsense-mediated mRNA decary protein 3 [Taiwania cryptomerioides]
Length = 515
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 199/496 (40%), Positives = 265/496 (53%), Gaps = 129/496 (26%)
Query: 4 AAGIFAVRKT---VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----- 55
A +F V+KT V CC CGI+M NA+NMCV C++S+VDITE LQKH I CP
Sbjct: 7 VADMFTVQKTMGQVLCCMCGISMPPNAANMCVNCIRSQVDITEGLQKHVTILHCPECSSY 66
Query: 56 ----------------------------------------------KIKLKLTVQKEVLE 69
+IK+KL +QKEVL
Sbjct: 67 LQPPKTWIKAQLESKELLTFCIKRLKNLNKVRLVHAEFIWTEPHSKRIKIKLRIQKEVLN 126
Query: 70 GVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKH 113
G I+EQ+ VV + + C N +QT PD + A VQ+ +LI KH
Sbjct: 127 GAILEQAYVVEYVQQENMCDNC--RRVQTNPDQYVAVVQVRQHVSHRRTFFYLEQLILKH 184
Query: 114 DAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCK 173
A ++A IK++ G++F+F+ RSH KFV F+G VVP +R++KQLVS+ K+ K
Sbjct: 185 GAASQAVNIKQVHEGVDFYFANRSHGSKFVNFLGSVVPTLNRNDKQLVSQDIKNSTYNYK 244
Query: 174 YTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQY 222
YT SV+I I + +LGNLGP V+CTKV+ +I LLDPFT RH ++DA+QY
Sbjct: 245 YTFSVQICPICKEDLICLPPKVSSSLGNLGPLVLCTKVSTNIMLLDPFTSRHAFMDANQY 304
Query: 223 WRSPFKALHTSRQLVEYIVLDVKVAST-----------------------ENDTILSTRT 259
WR PF+ L + RQLVEYIVLD++V +NDTI + +T
Sbjct: 305 WRVPFRPLLSGRQLVEYIVLDIEVNVGLITVGGMKYSLADAQVARVSDFGKNDTIFNVKT 364
Query: 260 HLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
HLGHLL GDYA+G+DL+ AN ND+E++ YK L PD + +KKSY+EK Q+K KP P K
Sbjct: 365 HLGHLLNPGDYALGFDLYGANTNDLEMDKYKGLNLPDVVLVKKSYEEKRQKKRGKPRPWK 424
Query: 320 LKPLEMEVDGSKCGADRE-KVNNEYEEFLRDL----------------------MASVTD 356
L L MEV+ S G + K +YE+FL +L AS+TD
Sbjct: 425 LNNLPMEVEPSSKGRTEDAKEVQDYEKFLEELEEDQEMRSKIALYRNKNYQPSETASMTD 484
Query: 357 KEDVPSVPLDYLLADL 372
ED P+VPL+ LL DL
Sbjct: 485 GEDGPAVPLEELLNDL 500
>gi|297818032|ref|XP_002876899.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322737|gb|EFH53158.1| nonsense-mediated mRNA decay NMD3 family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 516
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 200/497 (40%), Positives = 258/497 (51%), Gaps = 128/497 (25%)
Query: 5 AGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
+G+F V++T+ CCKCG+ M NA+NMCV CL+SEVDITE LQK I CP
Sbjct: 7 SGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTCYL 66
Query: 56 ---------------------------------------------KIKLKLTVQKEVLEG 70
+IK+KLTVQ EVL G
Sbjct: 67 QPPKTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLNG 126
Query: 71 VIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHD 114
++EQS V R+ C + Q PD W A VQL +LI +HD
Sbjct: 127 AVLEQSYPVEYTVRDNLCESC--SRFQANPDQWVALVQLRQHVSHRRTFFYLEQLILRHD 184
Query: 115 APARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKY 174
A +RA +I+++D GI+FFF +SHA FVEF+ +VVP + R ++QLVS KS KY
Sbjct: 185 AASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKY 244
Query: 175 TCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW 223
T SV+I + A LGNLGP VICTKV+++I LLDP TLR +LDA QYW
Sbjct: 245 TYSVKICPVCREDLVCLPSKVASGLGNLGPLVICTKVSDNITLLDPRTLRCAFLDARQYW 304
Query: 224 RSPFKALHTSRQLVEYIVLDVKVASTENDT--------------------ILSTRTHLGH 263
RS F++ TSRQLV+Y V DV+ +E + +THLGH
Sbjct: 305 RSGFRSALTSRQLVKYFVFDVEPPVSEATVGGQKYALSYVQIARESDIGKMFYVQTHLGH 364
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVP---PDTIKIKKSYKEKNQRKHRKPNPPKL 320
+L GD A+GYD++ AN ND E+E Y+ V P+ I IKK Y+E+ +RK +K KL
Sbjct: 365 ILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKKSRNWKL 424
Query: 321 KPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASVTDKE 358
K L ME+D S+ D EK + EYEEFLRDL AS+TD E
Sbjct: 425 KSLPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYKDKDYQASETASMTDGE 484
Query: 359 DVPSVPLDYLLADLDSS 375
PSVP++ LLADLD S
Sbjct: 485 GAPSVPIEELLADLDLS 501
>gi|15227711|ref|NP_178476.1| nonsense-mediated mRNA decay protein 3 [Arabidopsis thaliana]
gi|4582430|gb|AAD24816.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
gi|20466624|gb|AAM20629.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
gi|22136400|gb|AAM91278.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
gi|330250660|gb|AEC05754.1| nonsense-mediated mRNA decay protein 3 [Arabidopsis thaliana]
Length = 516
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 201/497 (40%), Positives = 262/497 (52%), Gaps = 128/497 (25%)
Query: 5 AGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
+G+F V++T+ CCKCG+ M NA+NMCV CL+SEVDITE LQK I CP
Sbjct: 7 SGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTCYL 66
Query: 56 ---------------------------------------------KIKLKLTVQKEVLEG 70
+IK+KLTVQ EVL G
Sbjct: 67 QPPKTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLNG 126
Query: 71 VIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHD 114
++EQS V R+ C + Q PD W A++QL +LI +HD
Sbjct: 127 AVLEQSYPVEYTVRDNLCESC--SRFQANPDQWVASIQLRQHVSHRRTFFYLEQLILRHD 184
Query: 115 APARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKY 174
A +RA +I+++D GI+FFF +SHA FVEF+ +VVP + R ++QLVS KS KY
Sbjct: 185 AASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKY 244
Query: 175 TCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW 223
T SV+I + A LGNLGP V+CTKV+++I LLDP TLR +LDA QYW
Sbjct: 245 TYSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLDARQYW 304
Query: 224 RSPFKALHTSRQLVEYIVLDV------------KVA------STENDT--ILSTRTHLGH 263
RS F++ TSRQLV+Y V DV K A + E+D + +THLGH
Sbjct: 305 RSGFRSALTSRQLVKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGKMFYVQTHLGH 364
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVP---PDTIKIKKSYKEKNQRKHRKPNPPKL 320
+L GD A+GYD++ AN ND E+E Y+ V P+ I IKK Y+E+ +RK +K KL
Sbjct: 365 ILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKKSRNWKL 424
Query: 321 KPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASVTDKE 358
K L ME+D S+ D EK + EYEEFLRDL AS+TD E
Sbjct: 425 KSLPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYRDKDYQASETASMTDGE 484
Query: 359 DVPSVPLDYLLADLDSS 375
PSVP++ LLADLD S
Sbjct: 485 GAPSVPIEELLADLDLS 501
>gi|15810403|gb|AAL07089.1| putative nonsense-mediated mRNA decay protein [Arabidopsis
thaliana]
Length = 516
Score = 310 bits (793), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 200/497 (40%), Positives = 261/497 (52%), Gaps = 128/497 (25%)
Query: 5 AGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
+G+F V++T+ CCKCG+ M NA+NM V CL+SEVDITE LQK I CP
Sbjct: 7 SGMFNVQQTIGSVLCCKCGVPMAPNAANMRVNCLRSEVDITEGLQKSIQIFYCPECTCYL 66
Query: 56 ---------------------------------------------KIKLKLTVQKEVLEG 70
+IK+KLTVQ EVL G
Sbjct: 67 QPPKTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLNG 126
Query: 71 VIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHD 114
++EQS V R+ C + Q PD W A++QL +LI +HD
Sbjct: 127 AVLEQSYPVEYTVRDNLCESC--SRFQANPDQWVASIQLRQHVSHRRTFFYLEQLILRHD 184
Query: 115 APARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKY 174
A +RA +I+++D GI+FFF +SHA FVEF+ +VVP + R ++QLVS KS KY
Sbjct: 185 AASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKY 244
Query: 175 TCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW 223
T SV+I + A LGNLGP V+CTKV+++I LLDP TLR +LDA QYW
Sbjct: 245 TYSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLDARQYW 304
Query: 224 RSPFKALHTSRQLVEYIVLDV------------KVA------STENDT--ILSTRTHLGH 263
RS F++ TSRQLV+Y V DV K A + E+D + +THLGH
Sbjct: 305 RSGFRSALTSRQLVKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGKMFYVQTHLGH 364
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVP---PDTIKIKKSYKEKNQRKHRKPNPPKL 320
+L GD A+GYD++ AN ND E+E Y+ V P+ I IKK Y+E+ +RK +K KL
Sbjct: 365 ILKPGDQALGYDIYGANVNDNEMEKYRLSVKNGLPEAILIKKCYEEQRERKQKKSRNWKL 424
Query: 321 KPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------MASVTDKE 358
K L ME+D S+ D EK + EYEEFLRDL AS+TD E
Sbjct: 425 KSLPMEMDDSRGRVDPEKTDKEYEEFLRDLEENPELRFNISLYRDKDYQASETASMTDGE 484
Query: 359 DVPSVPLDYLLADLDSS 375
PSVP++ LLADLD S
Sbjct: 485 GAPSVPIEELLADLDLS 501
>gi|168031334|ref|XP_001768176.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680614|gb|EDQ67049.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 516
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 190/516 (36%), Positives = 265/516 (51%), Gaps = 138/516 (26%)
Query: 7 IFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------- 55
+F V TV CC CG+TM NA+NMCVTCL+S+VDITE LQK + CP
Sbjct: 1 MFTVSHTVGRVLCCMCGVTMAPNAANMCVTCLRSQVDITEGLQKLVTVLYCPECGRYLQP 60
Query: 56 -------------------------------------------KIKLKLTVQKEVLEGVI 72
++K++L +QKEV+ G I
Sbjct: 61 PRTWVKAELESKELLTFCIKRLKNINKVRLVDAGFIWTEPHSKRLKVRLKIQKEVINGAI 120
Query: 73 VEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAP 116
+EQ+ VV + C + PD W A VQ+ +LI KH A
Sbjct: 121 LEQAYVVEYTVEDHMCEKC--SRVAANPDQWIACVQVRQKVEHKRTFFFLEQLIIKHGAA 178
Query: 117 ARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTC 176
A A IK++ G++F+F+ +SH +K ++F+ VVP +SRH+KQLVS TKS ++T
Sbjct: 179 AAAVNIKQIHDGMDFYFANKSHGLKLLDFLSNVVPVRSRHDKQLVSHDTKSNTYNYRFTM 238
Query: 177 SVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR- 224
SVEI + A LGN+GP V+C +V+NS+ LLDP TLR Y+DA+QYWR
Sbjct: 239 SVEICPVCKDDLICLPQKVAAGLGNIGPLVLCAQVSNSLLLLDPQTLRTAYMDANQYWRT 298
Query: 225 ---SPFKALHTSRQLVEYIVLDVKV---AST-------------------ENDTILSTRT 259
S F++L +RQLVEY+VLD++ AS+ +ND RT
Sbjct: 299 GFTSGFRSLLNARQLVEYVVLDIETDPSASSRASKYVLADVQVARKSDFGKNDITFMART 358
Query: 260 HLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
HLGHLL +GD+A+GYD++ AN ND ELE Y++L PD + +KKSY+EK ++ KP P K
Sbjct: 359 HLGHLLNVGDFALGYDVYAANTNDPELEKYRNLSLPDVVLVKKSYEEKRAKRRGKPRPWK 418
Query: 320 LKPLEMEVDGSKCGADREKVNNEYEEFLRDL-----------------------MASVT- 355
LK L+ME+D S D++K EYE FL ++ AS+
Sbjct: 419 LKALDMEIDPSALRQDQDKAAKEYERFLEEIEEDPEMRAKIALYRDANYRPQSETASMID 478
Query: 356 -DKEDVPSVPLDYLLADL----DSSDKEEGDDSMIE 386
D ++ P+VPL+ LLADL + + E DD +E
Sbjct: 479 GDGDEPPTVPLEELLADLRIDHERDESEAADDVEME 514
>gi|225441876|ref|XP_002278623.1| PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera]
Length = 489
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 192/476 (40%), Positives = 239/476 (50%), Gaps = 134/476 (28%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M + AG+F V T+ CCKCGI M NA+NMCV CL++EVDITE LQKHA + CP
Sbjct: 1 MTEEAGMFRVHHTIGSVLCCKCGIPMTPNAANMCVKCLRTEVDITEGLQKHATLVHCPEC 60
Query: 56 -------------------------------------------------KIKLKLTVQKE 66
+IK+KL VQKE
Sbjct: 61 DRYFRPPKTWIEPQLESKELLTLCLKTLKNLNQVRLIHAEFIWTEPHSKRIKVKLRVQKE 120
Query: 67 VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
VL G I+EQ+ +V + + C + +Q PD W A+VQ+ +LI
Sbjct: 121 VLNGAILEQAYIVEYVQQEHMCESC--SRVQANPDQWVASVQVRQHVPHRRTLFYLEQLI 178
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQS-RHEKQLVSRGTKSRN 169
HDA A KIK M+ GI+FFF+ SH KFVEF+G++VP +S R +QLVS KS N
Sbjct: 179 LMHDAARCAKKIKPMNQGIDFFFANWSHGKKFVEFIGKMVPIKSHRPSQQLVSHDPKSNN 238
Query: 170 CKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLD 218
KYT SVEI I A LGN VICTKVTN I LDP+TL+H LD
Sbjct: 239 YYYKYTLSVEICPICREDLICLPREVASGLGNPHSLVICTKVTNRITFLDPYTLKHHCLD 298
Query: 219 ADQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTIL 255
A+QYWRSPFKAL +SRQLVEYIVLDV + +E NDTI
Sbjct: 299 AEQYWRSPFKALLSSRQLVEYIVLDVGIVYSEVHVGGSKYALADAQVARLSDFGKNDTIF 358
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
+ THLGHLL GD+A+GYD+ N ND+ELE Y+ P I I+K+Y+E Q K KP
Sbjct: 359 NITTHLGHLLNPGDHALGYDMFATNSNDMELEKYRDFDLPPAILIRKTYEENCQGKGGKP 418
Query: 316 NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDVPSVPLDYLLAD 371
P ++ EYEEFLR L ED P + L+ L +
Sbjct: 419 PP--------------------LMSREYEEFLRRL-------EDNPELTLNISLHE 447
>gi|357477383|ref|XP_003608977.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355510032|gb|AES91174.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 462
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 153/317 (48%), Positives = 198/317 (62%), Gaps = 41/317 (12%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV-------MSRNITCVNLVPGFMQTGPDHWDAAVQLE 108
++K+K++VQKEV G I++QS +V M + + V V H LE
Sbjct: 137 RVKVKVSVQKEVYNGAILQQSYLVEYVQQDHMCESCSRVQHV--------SHRRTFFYLE 188
Query: 109 -LIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
LI KH A ARA +IK+MDHGI+F+FS RSH F+EF+G+V P +SR++KQLVS +KS
Sbjct: 189 QLILKHGAAARAVRIKQMDHGIDFYFSKRSHGNSFLEFIGKVAPIRSRNDKQLVSHDSKS 248
Query: 168 RNCKCKYTCSVEISAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCY 216
+ KYT SVEIS I +L GN+GP VICTKVTNSIALLDP TL++ +
Sbjct: 249 NDYNYKYTFSVEISPICREDLICLPPKAYIALGNIGPIVICTKVTNSIALLDPLTLKYSF 308
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE----NDTILSTRTHLGHLLILGDYAI 272
LDADQYWR+ FK+L TS++LVEYIVLD++V S++ T+ T+ L + GD+A+
Sbjct: 309 LDADQYWRASFKSLLTSKELVEYIVLDLEVVSSKIGPSEITMGGTKYVLADAQVPGDHAL 368
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKC 332
GYDL+ AN ND E ENYK + P+ I IKKSYKEK R P K L MEVD K
Sbjct: 369 GYDLYRANSNDTEYENYKGHI-PEVILIKKSYKEK-----RCGKPRSWKSLPMEVD-DKV 421
Query: 333 GADREKVNNEYEEFLRD 349
G D N E + FL+D
Sbjct: 422 GVD---YNLERDLFLKD 435
>gi|227204315|dbj|BAH57009.1| AT2G03820 [Arabidopsis thaliana]
Length = 392
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 202/384 (52%), Gaps = 103/384 (26%)
Query: 5 AGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
+G+F V++T+ CCKCG+ M NA+NMCV CL+SEVDITE LQK I CP
Sbjct: 7 SGMFNVQQTIGSVLCCKCGVPMAPNAANMCVNCLRSEVDITEGLQKSIQIFYCPECTCYL 66
Query: 56 ---------------------------------------------KIKLKLTVQKEVLEG 70
+IK+KLTVQ EVL G
Sbjct: 67 QPPKTWIKCQWESKELLTFCIKRLKNLNKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLNG 126
Query: 71 VIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHD 114
++EQS V R+ C + Q PD W A++QL +LI +HD
Sbjct: 127 AVLEQSYPVEYTVRDNLCESC--SRFQANPDQWVASIQLRQHVSHRRTFFYLEQLILRHD 184
Query: 115 APARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKY 174
A +RA +I+++D GI+FFF +SHA FVEF+ +VVP + R ++QLVS KS KY
Sbjct: 185 AASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDVKSSLYNYKY 244
Query: 175 TCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW 223
T SV+I + A LGNLGP V+CTKV+++I LLDP TLR +LDA QYW
Sbjct: 245 TYSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLLDPRTLRCAFLDARQYW 304
Query: 224 RSPFKALHTSRQLVEYIVLDV------------KVA------STENDT--ILSTRTHLGH 263
RS F++ TSRQLV+Y V DV K A + E+D + +THLGH
Sbjct: 305 RSGFRSALTSRQLVKYFVFDVEPPVGEATVGGQKYALSYVQIARESDIGKMFYVQTHLGH 364
Query: 264 LLILGDYAIGYDLHEANQNDIELE 287
+L GD A+GYD++ AN ND E++
Sbjct: 365 ILKPGDQALGYDIYGANVNDNEMK 388
>gi|413955127|gb|AFW87776.1| hypothetical protein ZEAMMB73_353235 [Zea mays]
Length = 525
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 175/506 (34%), Positives = 241/506 (47%), Gaps = 138/506 (27%)
Query: 4 AAGIF---AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------ 54
G+F A TV CC CG++M N +NMC CL++ VDITE + +HA + C
Sbjct: 11 GTGMFVPAATAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRHAAVVYCPDCSSY 70
Query: 55 ---------------------------PKIKLKLTVQ---------------------KE 66
P +L++++ +E
Sbjct: 71 LQPPRSWLRAAPESPELMQILLRRINRPLARLRVSLSGAEFVFSEPHSKRLRLKLRLRRE 130
Query: 67 VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
VL G+++EQ+ V + + C + Q PD W A VQL +L+
Sbjct: 131 VLHGIVLEQTHPVEFVVHDRLCDSC--SRAQANPDQWVAVVQLRQHVPHRRTFLYLEQLL 188
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
KH + A ++ G++FFF RSHA + V+FV V P Q++ KQLVS TKS
Sbjct: 189 LKHGQASLAIRVAAAPEGLDFFFGSRSHAARLVDFVATVAPIQTQTAKQLVSHDTKSSVY 248
Query: 171 KCKYTCSVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
KYT SVEI I ++ ++G LGP V+C KVTN+IALLDP TLR +L+
Sbjct: 249 NYKYTFSVEICPICREDLIALSPQASRDMGGLGPLVLCVKVTNAIALLDPLTLRVHHLEE 308
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
+Y FKA TS+QLVEYIVLD++ S E ND I +
Sbjct: 309 KKYRVYNFKAALTSKQLVEYIVLDIEPESPEICIDGSRYQLAYAQVARMSDFGKNDAIFT 368
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP-PDTIKIKKSYKEKNQRKHRKP 315
RTHLGHLL GD+A+GYDL+ AN ND +++ + P+ + +KKSY EK R R
Sbjct: 369 VRTHLGHLLNPGDHALGYDLYGANLNDDDMDMAMTRYSLPEVVLVKKSY-EKRPRTRRW- 426
Query: 316 NPPKLKPLEMEVDGS-KCGADREKVNNEYEEFLRDL---------------------MAS 353
KLK L +E D + K + EK +EYE FLRDL MAS
Sbjct: 427 ---KLKRLPVEEDAANKAKGEEEKRLDEYEAFLRDLEVDSGMWSKMNLYKNEDYRSEMAS 483
Query: 354 VTDKEDVPSVPLDYLLADLDSSDKEE 379
T +D+P+VP++ L+ DL D EE
Sbjct: 484 -TVGDDIPTVPIEELIEDLTLGDDEE 508
>gi|242034991|ref|XP_002464890.1| hypothetical protein SORBIDRAFT_01g028310 [Sorghum bicolor]
gi|241918744|gb|EER91888.1| hypothetical protein SORBIDRAFT_01g028310 [Sorghum bicolor]
Length = 525
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 172/491 (35%), Positives = 235/491 (47%), Gaps = 135/491 (27%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------- 54
A TV CC CG++M N +NMC CL+S VDITE + +HA + C
Sbjct: 19 ATAGTVLCCMCGVSMQPNPANMCARCLRSRVDITEGVPRHAAVVYCPDCSSYLQPPRSWL 78
Query: 55 -------------------PKIKLKLTVQ---------------------KEVLEGVIVE 74
P +L++++ +EVL G+++E
Sbjct: 79 RATPESPELMQILLRRINRPLARLRVSLSGAEFVFSEPHSKRLRLKLRLRREVLHGIVLE 138
Query: 75 QSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPAR 118
Q+ V + + C + Q PD W A VQL +L+ KH +
Sbjct: 139 QTHPVEFVVHDRLCDSC--SRAQANPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQASL 196
Query: 119 ATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSV 178
A ++ G++FFF RSHA + V+F+ V P Q+ KQLVS TKS KYT SV
Sbjct: 197 AIRVAAAPGGLDFFFGSRSHAARLVDFLATVAPIQTSTAKQLVSHDTKSSVYNYKYTFSV 256
Query: 179 EISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPF 227
EI I ++ ++G LGP V+C KVTN+IALLDP TLR +L+ +Y F
Sbjct: 257 EICPICREDLIALSPQASRDMGGLGPLVLCVKVTNAIALLDPLTLRVHHLEEKKYRVYNF 316
Query: 228 KALHTSRQLVEYIVLDVKVASTE-----------------------NDTILSTRTHLGHL 264
KA TS+QLVEYIVLD++ S E NDTI + RTHLGHL
Sbjct: 317 KAALTSKQLVEYIVLDIEQESPEISIDGSRYQLAYAQVARVSDFGKNDTIFTVRTHLGHL 376
Query: 265 LILGDYAIGYDLHEANQNDIELENYKSLVP-PDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
L GD+A+GYDL+ AN ND +++ + P+ + +KKSY EK R R KLK L
Sbjct: 377 LNPGDHALGYDLYGANLNDDDMDTAMARYSLPEVVLVKKSY-EKRPRTRRW----KLKRL 431
Query: 324 EMEVDGS-KCGADREKVNNEYEEFLRDL---------------------MASVTDKEDVP 361
+E D + K + E+ +EYE FLRDL MAS T +D+P
Sbjct: 432 PVEEDAANKAKGEEERRLDEYEAFLRDLELDPEMRFKMDLYKNEDYRSEMAS-TVGDDIP 490
Query: 362 SVPLDYLLADL 372
+VP+D LL DL
Sbjct: 491 TVPIDELLEDL 501
>gi|296085135|emb|CBI28630.3| unnamed protein product [Vitis vinifera]
Length = 404
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 197/403 (48%), Gaps = 149/403 (36%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKI 57
M + AG+F V +TV CCKCGI M NA+NMCV CL+SE+DITE LQKH
Sbjct: 61 MAEEAGMFMVHQTVGSVLCCKCGIPMTPNAANMCVKCLRSEIDITEGLQKH--------- 111
Query: 58 KLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPG-FMQTGPDHWDAAVQLELIQKHDAP 116
N+ V L+ F+ T P V+L +QK
Sbjct: 112 -------------------------NLNKVRLIHAEFIWTEPHSKRIKVKLR-VQK---- 141
Query: 117 ARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTC 176
++MD GI+FFF+ RSH VKFVEF+G+V P++SRH+KQLVS TKS N KYT
Sbjct: 142 ------EQMDQGIDFFFANRSHGVKFVEFIGKVTPSRSRHDKQLVSHDTKSNNYNYKYTF 195
Query: 177 SVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS 225
SVEI I A +LGNLGP VICTKV+N+IALLDPFTLRH
Sbjct: 196 SVEICPICREDLICLPPKVAVSLGNLGPLVICTKVSNNIALLDPFTLRHS---------- 245
Query: 226 PFKALHTSRQLVEYIVLDVKVAST----ENDTILSTRTHLGHLLILGDYAIGYDLHEANQ 281
D +VA +NDTI + RTHLGHLL GD+A+GYD++ AN
Sbjct: 246 -----------------DAQVARVSDFGKNDTIFNIRTHLGHLLNPGDHALGYDVYAANS 288
Query: 282 NDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNN 341
ND+ELE Y+ VD SK AD+EK+N
Sbjct: 289 NDMELEKYR------------------------------------VDDSKGRADQEKMNT 312
Query: 342 EYEEFLRDL----------------------MASVTDKEDVPS 362
EYE FLRDL MAS+TD ED+PS
Sbjct: 313 EYEVFLRDLEEDPELRFNISLYRNKEYQPSEMASMTDGEDLPS 355
>gi|194695634|gb|ACF81901.1| unknown [Zea mays]
gi|414867863|tpg|DAA46420.1| TPA: nonsense-mediated mRNA decay protein 3 isoform 1 [Zea mays]
gi|414867864|tpg|DAA46421.1| TPA: nonsense-mediated mRNA decay protein 3 isoform 2 [Zea mays]
Length = 525
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 172/513 (33%), Positives = 243/513 (47%), Gaps = 140/513 (27%)
Query: 4 AAGIF---AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANIT-------- 52
G+F A TV CC CG++M N +NMC CL++ VDITE + +HA +
Sbjct: 11 GTGMFVPAATAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRHAAVVYCPDCSSY 70
Query: 53 ---------------------------PCPKIKLKLTVQKEVLE---------------- 69
P ++++ L+ + V
Sbjct: 71 LQPPRSWLRATPESPELMQILLRRVNRPLARLRVSLSGAEFVFSEPHSKRLRLNLRLRRE 130
Query: 70 ---GVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
G+++EQ+ V + + C + Q PD W A VQL +L+
Sbjct: 131 VLHGIVLEQTHPVEFVVHDRLCDSC--SRAQANPDQWVAVVQLRQHVPHRRTFLYLEQLL 188
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
KH + A ++ G++FFF RSHA + V+F+ V P Q++ KQLVS TKS
Sbjct: 189 LKHGQASLAIRVAAAPGGLDFFFGSRSHAARLVDFLATVAPIQTQTAKQLVSHDTKSSVY 248
Query: 171 KCKYTCSVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
KYT SV+I I ++ ++G LGP V+C KVTN+IALLDP TLR +L+
Sbjct: 249 NYKYTFSVDICPICREDLIALSPQASRDMGGLGPLVLCVKVTNAIALLDPLTLRVHHLEE 308
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
+Y FKA TS+QLVEYIVLD++ S E NDTI +
Sbjct: 309 KKYRVYNFKATLTSKQLVEYIVLDIEQESPEISIDGSRYQLAYAQVARVSDFGKNDTIFT 368
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP-PDTIKIKKSYKEKNQRKHRKP 315
RTHLGHLL GD+A+GYDL+ AN ND ++ + P+ + +KKSY EK R R
Sbjct: 369 VRTHLGHLLNPGDHALGYDLYGANLNDDDMNTAMTRYSLPEAVLVKKSY-EKRPRTRRW- 426
Query: 316 NPPKLKPLEMEVDGS-KCGADREKVNNEYEEFLRDL---------------------MAS 353
KLK L +E D + K + EK +EYE FLRDL MAS
Sbjct: 427 ---KLKRLPVEEDAANKAKGEEEKTLDEYEAFLRDLELDPGMRFGVNLYKNEDYRSEMAS 483
Query: 354 VTDKEDVPSVPLDYLLADLDSSDKE--EGDDSM 384
T +D+P+VP++ L+ DL D E EG++++
Sbjct: 484 -TVGDDIPTVPIEELIEDLTLGDNEDDEGEEAV 515
>gi|357147524|ref|XP_003574377.1| PREDICTED: 60S ribosomal export protein NMD3-like [Brachypodium
distachyon]
Length = 523
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 172/501 (34%), Positives = 241/501 (48%), Gaps = 142/501 (28%)
Query: 4 AAGIFAVRKT---VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------ 54
+G+F +T V CC CG++M N +NMC CL++ VDITE + +HA + C
Sbjct: 12 GSGMFVPTQTAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRHAAVVYCPDCTSY 71
Query: 55 ---------------------------PKIKLKLTVQ---------------------KE 66
P +L++++ +E
Sbjct: 72 LQPPRSWLRAGPESPELLQILLRRLKHPLARLRVSLSGAEFVFSEPHSKRLRLKLRLRRE 131
Query: 67 VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
VL G+++EQ+ V + C + Q PD W A VQL +L+
Sbjct: 132 VLNGIVLEQTHPVEFTVHDRLCDSCARA--QANPDQWVAVVQLRQHVPHRRTFLYLEQLL 189
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
KH A A ++ G++FFF RSHA + V+F+G V P Q+ KQLVS TKS
Sbjct: 190 IKHGQAALAIRVASAPGGLDFFFGSRSHAARLVDFLGTVAPIQTNTAKQLVSHDTKSFIY 249
Query: 171 KCKYTCSVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
KYT SVEI I ++ +LG LGP V+C KVTN+IALLDP TLR +L+
Sbjct: 250 NYKYTFSVEICPICREDLIALSPKASRDLGGLGPLVLCIKVTNAIALLDPLTLRVHHLEE 309
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
+Y FKA TS+QLVEY+VLD++ S E NDT+ +
Sbjct: 310 KKYRVYNFKAALTSKQLVEYMVLDIEQESPEITVDGSRYQLAYAQVARMSDFGKNDTVFT 369
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP---PDTIKIKKSYKEKNQRKHR 313
RTHLGHLL GD A+GYDL+ AN ND +++ K+L+ P+ I +KKSY EK R R
Sbjct: 370 VRTHLGHLLSPGDLALGYDLYGANMNDDDMD--KALLRQTLPEVILVKKSY-EKRPRTRR 426
Query: 314 KPNPPKLKPLEMEVD-GSKCGADREKVNNEYEEFLRDL---------------------M 351
KLK L +E D G+K + +K +EY +F+ +L M
Sbjct: 427 W----KLKRLPIEEDLGNKAKGEEDKRADEYSKFILELERDPEMRFNVNLYKDEDYRSEM 482
Query: 352 ASVTDKEDVPSVPLDYLLADL 372
AS T +DVP+VP++ L+ DL
Sbjct: 483 AS-TIGDDVPTVPIEELIEDL 502
>gi|212724002|ref|NP_001132875.1| uncharacterized protein LOC100194368 [Zea mays]
gi|195612302|gb|ACG27981.1| nonsense-mediated mRNA decay protein 3 [Zea mays]
Length = 525
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 171/513 (33%), Positives = 242/513 (47%), Gaps = 140/513 (27%)
Query: 4 AAGIF---AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANIT-------- 52
G+F A TV CC CG++M N +NMC CL++ VDITE + +HA +
Sbjct: 11 GTGMFVPAATAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRHAAVVYCPDCSSY 70
Query: 53 ---------------------------PCPKIKLKLTVQKEVLE---------------- 69
P ++++ L+ + V
Sbjct: 71 LQPPRSWLRATPESPELMQILLRRVNRPLARLRVSLSGAEFVFSEPHSKRLRLNLRLRRE 130
Query: 70 ---GVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
G+++EQ+ V + + C + Q PD W A VQL +L+
Sbjct: 131 VLHGIVLEQTHPVEFVVHDRLCDSC--SRAQANPDQWVAVVQLRQHVPHRRTFLYLEQLL 188
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
KH + A ++ G++FFF RSHA + V+F+ V P Q++ KQLVS TKS
Sbjct: 189 LKHGQASLAIRVAAAPGGLDFFFGSRSHAARLVDFLATVAPIQTQTAKQLVSHDTKSSVY 248
Query: 171 KCKYTCSVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
KYT SV+I I ++ ++G LGP V+C KVTN+IALLDP TLR +L+
Sbjct: 249 NYKYTFSVDICPICREDLIALSPQASRDMGGLGPLVLCVKVTNAIALLDPLTLRVHHLEE 308
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILS 256
+Y FKA TS+QLVEYIVLD++ S E NDTI +
Sbjct: 309 KKYRVYNFKATLTSKQLVEYIVLDIEQESPEISIDGSRYQLAYAQVARVSDFGKNDTIFT 368
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP-PDTIKIKKSYKEKNQRKHRKP 315
RTHLGHLL GD+A+GYDL+ AN ND ++ + P+ + +KKSY EK R R
Sbjct: 369 VRTHLGHLLNPGDHALGYDLYGANLNDDDMNTAMTRYSLPEAVLVKKSY-EKRPRTRRW- 426
Query: 316 NPPKLKPLEMEVDGS-KCGADREKVNNEYEEFLRDL---------------------MAS 353
KLK L +E D + K + EK +EYE FLRDL MAS
Sbjct: 427 ---KLKRLPVEEDAANKAKGEEEKTLDEYEAFLRDLELDPGMRFGVNLYKNEDYRSEMAS 483
Query: 354 VTDKEDVPSVPLDYLLADLDSSDKE--EGDDSM 384
T +D+P+V ++ L+ DL D E EG++++
Sbjct: 484 -TVGDDIPTVSIEELIEDLTLGDNEDDEGEEAV 515
>gi|125533047|gb|EAY79612.1| hypothetical protein OsI_34753 [Oryza sativa Indica Group]
Length = 523
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 168/499 (33%), Positives = 235/499 (47%), Gaps = 138/499 (27%)
Query: 4 AAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----- 55
+G+F +TV CC CG+ M N +NMC C+++ VDITE + +HA + CP
Sbjct: 11 GSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSY 70
Query: 56 ------------------------------KIKLKLTVQK-------------------E 66
++++ L+ + E
Sbjct: 71 LQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRRE 130
Query: 67 VLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQK 112
V V++EQ+ V + Q+ PD W A VQL +L+ K
Sbjct: 131 VFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLK 190
Query: 113 HDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKC 172
H + A ++ G++FFF RSHA + V+F+ V P Q++ KQLVS TKS
Sbjct: 191 HGQASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNY 250
Query: 173 KYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQ 221
K+T SVEI I + +LG LGP V+C KVTN+IALLDP TLR +L+ +
Sbjct: 251 KHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKK 310
Query: 222 YWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILSTR 258
Y FKA TS+QLVEYIVLD++ S E NDT+ + R
Sbjct: 311 YRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVR 370
Query: 259 THLGHLLILGDYAIGYDLHEANQNDIELEN---YKSLVPPDTIKIKKSYKEKNQRKHRKP 315
THLGHLL GD A+GYDL+ AN ND +++ SL P+ I +KKS+ ++ + +
Sbjct: 371 THLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSL--PEVILVKKSFAKRPRTRRW-- 426
Query: 316 NPPKLKPLEMEVDG-SKCGADREKVNNEYEEFLRDL---------------------MAS 353
KLK L ME D +K + EK +EYEEFLRDL MAS
Sbjct: 427 ---KLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMAS 483
Query: 354 VTDKEDVPSVPLDYLLADL 372
T +DVP+VP++ L+ DL
Sbjct: 484 -TIGDDVPTVPIEELIEDL 501
>gi|115483606|ref|NP_001065473.1| Os10g0573900 [Oryza sativa Japonica Group]
gi|78709040|gb|ABB48015.1| NMD3 family protein, expressed [Oryza sativa Japonica Group]
gi|113640005|dbj|BAF27310.1| Os10g0573900 [Oryza sativa Japonica Group]
gi|215765823|dbj|BAG87520.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 523
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 168/499 (33%), Positives = 235/499 (47%), Gaps = 138/499 (27%)
Query: 4 AAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----- 55
+G+F +TV CC CG+ M N +NMC C+++ VDITE + +HA + CP
Sbjct: 11 GSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSY 70
Query: 56 ------------------------------KIKLKLTVQK-------------------E 66
++++ L+ + E
Sbjct: 71 LQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRRE 130
Query: 67 VLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQK 112
V V++EQ+ V + Q+ PD W A VQL +L+ K
Sbjct: 131 VFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLK 190
Query: 113 HDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKC 172
H + A ++ G++FFF RSHA + V+F+ V P Q++ KQLVS TKS
Sbjct: 191 HGQASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNY 250
Query: 173 KYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQ 221
K+T SVEI I + +LG LGP V+C KVTN+IALLDP TLR +L+ +
Sbjct: 251 KHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKK 310
Query: 222 YWRSPFKALHTSRQLVEYIVLDVKVASTE-----------------------NDTILSTR 258
Y FKA TS+QLVEYIVLD++ S E NDT+ + R
Sbjct: 311 YRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVR 370
Query: 259 THLGHLLILGDYAIGYDLHEANQNDIELEN---YKSLVPPDTIKIKKSYKEKNQRKHRKP 315
THLGHLL GD A+GYDL+ AN ND +++ SL P+ I +KKS+ ++ + +
Sbjct: 371 THLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSL--PEVILVKKSFAKRPRTRRW-- 426
Query: 316 NPPKLKPLEMEVDG-SKCGADREKVNNEYEEFLRDL---------------------MAS 353
KLK L ME D +K + EK +EYEEFLRDL MAS
Sbjct: 427 ---KLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMAS 483
Query: 354 VTDKEDVPSVPLDYLLADL 372
T +DVP+VP++ L+ DL
Sbjct: 484 -TIGDDVPTVPIEELIEDL 501
>gi|12643043|gb|AAK00432.1|AC060755_2 hypothetical protein [Oryza sativa Japonica Group]
Length = 711
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 230/487 (47%), Gaps = 135/487 (27%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
TV CC CG+ M N +NMC C+++ VDITE + +HA + CP
Sbjct: 211 TVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSWLRAGP 270
Query: 56 ------------------KIKLKLTVQK-------------------EVLEGVIVEQSDV 78
++++ L+ + EV V++EQ+
Sbjct: 271 ESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFNAVVLEQTHP 330
Query: 79 VMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
V + Q+ PD W A VQL +L+ KH + A ++
Sbjct: 331 VEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQASLALRVAA 390
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FFF RSHA + V+F+ V P Q++ KQLVS TKS K+T SVEI I
Sbjct: 391 APGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHTFSVEICPIC 450
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+ +LG LGP V+C KVTN+IALLDP TLR +L+ +Y FKA TS
Sbjct: 451 REDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTS 510
Query: 234 RQLVEYIVLDVKVASTE-----------------------NDTILSTRTHLGHLLILGDY 270
+QLVEYIVLD++ S E NDT+ + RTHLGHLL GD
Sbjct: 511 KQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHLGHLLNPGDL 570
Query: 271 AIGYDLHEANQNDIELEN---YKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
A+GYDL+ AN ND +++ SL P+ I +KKS+ ++ + + KLK L ME
Sbjct: 571 ALGYDLYGANLNDDDMDTAMMRHSL--PEVILVKKSFAKRPRTRRW-----KLKRLPMEE 623
Query: 328 DG-SKCGADREKVNNEYEEFLRDL---------------------MASVTDKEDVPSVPL 365
D +K + EK +EYEEFLRDL MAS T +DVP+VP+
Sbjct: 624 DAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMAS-TIGDDVPTVPI 682
Query: 366 DYLLADL 372
+ L+ DL
Sbjct: 683 EELIEDL 689
>gi|302853859|ref|XP_002958442.1| hypothetical protein VOLCADRAFT_69446 [Volvox carteri f.
nagariensis]
gi|300256247|gb|EFJ40518.1| hypothetical protein VOLCADRAFT_69446 [Volvox carteri f.
nagariensis]
Length = 568
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 150/426 (35%), Positives = 208/426 (48%), Gaps = 110/426 (25%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK---------- 56
CC CG +++ N SNMCV C++S+VDITE +QK + C PK
Sbjct: 2 CCLCGTSILPNPSNMCVNCIRSQVDITEGIQKQVTVLWCKECGRYLQPPKHWVSAELESK 61
Query: 57 --------------------------------IKLKLTVQKEVLEGVIVEQSDVV--MSR 82
+K+KLT+Q EV G I++Q+ VV +
Sbjct: 62 ELLTFCIKKIKGLQKVKLVDAGFVWTEPHSKRLKVKLTIQAEVFNGAILQQTFVVDYVVE 121
Query: 83 NITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHG 128
N C + P+ W A VQL +LI KHDA A KIK + G
Sbjct: 122 NNMCPDC--NRQNANPNSWVACVQLRQHVFHKRTFLFLEQLILKHDAAANCVKIKDIHEG 179
Query: 129 IEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL 188
I+FF+S R HA+KF++F+ VVP + R +KQLVS T + K+T SVEI + +L
Sbjct: 180 IDFFYSQRGHALKFIDFLQSVVPIRFRADKQLVSHDTHNNTYNYKFTFSVEIVPLCKDDL 239
Query: 189 -----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLV 237
GNLGP V+ +++TN I + DP TLR+ +DA Y+R PF AL + R LV
Sbjct: 240 ACLPAKMAASCGNLGPLVLVSRITNQITITDPLTLRNYSMDAPVYYRHPFTALASQRALV 299
Query: 238 EYIVLDV-------------------KVAST----ENDTILSTRTHLGHLLILGDYAIGY 274
YIVLD+ +VA NDT+ TRTHLG++L GD +GY
Sbjct: 300 PYIVLDIEPLPVPQGNSNSRYLLSEAQVARMSDFGRNDTVFHTRTHLGNILHPGDTVLGY 359
Query: 275 DLHEANQNDIELENY--KSLVPPDTIKIKKSYKEKNQRKHRK-----PNPPKLKPLEMEV 327
D+ + ++ E Y K PD + ++KSY+EK +++H K P KLK LEMEV
Sbjct: 360 DMTASQLVGLDYEAYVNKGGRVPDVVLVRKSYEEKRRKRHAKGGAAAARPWKLKTLEMEV 419
Query: 328 DGSKCG 333
D + G
Sbjct: 420 DEAAGG 425
>gi|326526265|dbj|BAJ97149.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 521
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 168/492 (34%), Positives = 237/492 (48%), Gaps = 145/492 (29%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------ 54
TV CC CG++M N +NMC CL++ VDITE + ++A + C
Sbjct: 23 TVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRNAAVVYCPDCFSYLQPPRSWLRAGP 82
Query: 55 ---------------PKIKLKLTVQ---------------------KEVLEGVIVEQSD- 77
P +L++++ +EVL G+++EQ+
Sbjct: 83 ESPELLQILLRRLKHPLARLRVSLSGAEFVFSEPHSKRLRLKLHLRREVLNGIVLEQTHP 142
Query: 78 ---VVMSRNI-TCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARA 119
VV R +C Q PD W A VQL +L+ KH A A
Sbjct: 143 VEFVVHDRLCDSCAR-----AQANPDQWVAVVQLRQHVPHRRTFLYLEQLLIKHGQAALA 197
Query: 120 TKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVE 179
++ G++FFF RSHA + V+F+G V P Q+ KQLVS TKS KYT SVE
Sbjct: 198 IRVASAPGGLDFFFGSRSHAARLVDFLGTVAPIQTNTAKQLVSHDTKSFIYNYKYTFSVE 257
Query: 180 ISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFK 228
I I ++ +LG LGP V+CTKVTN+IALLDP TLR +L+ +Y FK
Sbjct: 258 ICPICREDLIALSPKASRDLGGLGPLVLCTKVTNAIALLDPLTLRVHHLEEKKYRVYNFK 317
Query: 229 ALHTSRQLVEYIVLDVKVASTE-----------------------NDTILSTRTHLGHLL 265
A TS+QLV+Y+VLD++ S E NDT+ + RTHLGH L
Sbjct: 318 AALTSKQLVQYMVLDIEPESPEITIDGSRYQLAYAQVARMSDFGKNDTVFTVRTHLGHRL 377
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVP---PDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
GD A+GYDL+ AN ND +++ K+L+ P+ I +KKSY EK +R R KLK
Sbjct: 378 NPGDLALGYDLYGANMNDDDMD--KALLRQNLPEVILVKKSY-EKRRRTRRW----KLKR 430
Query: 323 LEMEVD-GSKCGADREKVNNEYEEF---------------------LRDLMASVTDKEDV 360
L +E D G+K + ++ +EY++F R MAS T +D+
Sbjct: 431 LPVEEDLGNKAKGEEDRREDEYKKFLDDLELDPDLRLAINLYKNEDYRSEMAS-TVGDDL 489
Query: 361 PSVPLDYLLADL 372
P+VP++ L+ DL
Sbjct: 490 PTVPIEELIEDL 501
>gi|326491705|dbj|BAJ94330.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326507208|dbj|BAJ95681.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532436|dbj|BAK05147.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 521
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 168/492 (34%), Positives = 237/492 (48%), Gaps = 145/492 (29%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------ 54
TV CC CG++M N +NMC CL++ VDITE + ++A + C
Sbjct: 23 TVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRNAAVVYCPDCFSYLQPPRSWLRAGP 82
Query: 55 ---------------PKIKLKLTVQ---------------------KEVLEGVIVEQSD- 77
P +L++++ +EVL G+++EQ+
Sbjct: 83 ESPELLQILLRRLKHPLARLRVSLSGAEFVFSEPHSKRLRLKLRLRREVLNGIVLEQTHP 142
Query: 78 ---VVMSRNI-TCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARA 119
VV R +C Q PD W A VQL +L+ KH A A
Sbjct: 143 VEFVVHDRLCDSCAR-----AQANPDQWVAVVQLRQHVPHRRTFLYLEQLLIKHGQAALA 197
Query: 120 TKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVE 179
++ G++FFF RSHA + V+F+G V P Q+ KQLVS TKS KYT SVE
Sbjct: 198 IRVASAPGGLDFFFGSRSHAARLVDFLGTVAPIQTNTAKQLVSHDTKSFIYNYKYTFSVE 257
Query: 180 ISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFK 228
I I ++ +LG LGP V+CTKVTN+IALLDP TLR +L+ +Y FK
Sbjct: 258 ICPICREDLIALSPKASRDLGGLGPLVLCTKVTNAIALLDPLTLRVHHLEEKKYRVYNFK 317
Query: 229 ALHTSRQLVEYIVLDVKVASTE-----------------------NDTILSTRTHLGHLL 265
A TS+QLV+Y+VLD++ S E NDT+ + RTHLGH L
Sbjct: 318 AALTSKQLVQYMVLDIEPESPEITIDGSRYQLAYAQVARMSDFGKNDTVFTVRTHLGHRL 377
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVP---PDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
GD A+GYDL+ AN ND +++ K+L+ P+ I +KKSY EK +R R KLK
Sbjct: 378 NPGDLALGYDLYGANMNDDDMD--KALLRQNLPEVILVKKSY-EKRRRTRRW----KLKR 430
Query: 323 LEMEVD-GSKCGADREKVNNEYEEF---------------------LRDLMASVTDKEDV 360
L +E D G+K + ++ +EY++F R MAS T +D+
Sbjct: 431 LPVEEDLGNKAKGEEDRREDEYKKFLDDLELDPDLRLAINLYKNEDYRSEMAS-TVGDDL 489
Query: 361 PSVPLDYLLADL 372
P+VP++ L+ DL
Sbjct: 490 PTVPIEELIEDL 501
>gi|307109780|gb|EFN58017.1| hypothetical protein CHLNCDRAFT_142211 [Chlorella variabilis]
Length = 563
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 200/412 (48%), Gaps = 115/412 (27%)
Query: 5 AGIFAVRKT---VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------- 54
AG F +T V CC CG ++ N +NMCV C++++VDITE +QK + C
Sbjct: 12 AGTFMPHQTQGHVLCCLCGTSITPNPTNMCVNCIRTQVDITEGIQKQVTVLWCKSCGRYL 71
Query: 55 --PK------------------------------------------IKLKLTVQKEVLEG 70
PK +K+KLT+Q EVL G
Sbjct: 72 QPPKHWLKADLESKELLTYCIKRVRGLSKVKLVDAAFVWTEPHSMRLKVKLTIQGEVLNG 131
Query: 71 VIVEQSDVV---MSRNI--TCVNLVPGFMQTGPDHWDAAVQL--------------ELIQ 111
I++QS VV + R + TC P+ W A VQ+ +LI
Sbjct: 132 AILQQSFVVEYVVERYMCPTC-----NRQNANPNAWVACVQVRQHVSHKRTFFFLEQLIL 186
Query: 112 KHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCK 171
KH A +K+M G++F+F+ R+HA+KF++F+ VP + RH+KQLVS + N
Sbjct: 187 KHSADESCVNVKEMHEGVDFYFANRAHAIKFIDFLQTAVPIRYRHDKQLVSHDVHTSNYN 246
Query: 172 CKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDAD 220
KYT SVE++ + A +LGN+GP V+ T+VTN+I L DP +LR L+A
Sbjct: 247 YKYTFSVEVAPLCKDDLVCLPAKLAASLGNIGPVVVVTRVTNAITLTDPLSLRQAVLEAG 306
Query: 221 QYWRSPFKALHTSRQLVEYIVLDVKV---------------ASTE---------NDTILS 256
YWR+P K + SRQL E+ +LD +V AS E ND
Sbjct: 307 AYWRNPLKPMMGSRQLTEFYILDSEVVAPTGGYGHNPKWALASCEVARAADFGSNDQTFF 366
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELEN--YKSLVPPDTIKIKKSYKE 306
RTHLGHLL GD A+GYD+ AN D ELE +K L PD + ++KSY+E
Sbjct: 367 ARTHLGHLLHAGDSAVGYDVANANLVDPELEKAVHKGLTLPDVVLVRKSYEE 418
>gi|125575780|gb|EAZ17064.1| hypothetical protein OsJ_32560 [Oryza sativa Japonica Group]
Length = 501
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 161/485 (33%), Positives = 228/485 (47%), Gaps = 132/485 (27%)
Query: 4 AAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----- 55
+G+F +TV CC CG+ M N +NMC C+++ VDITE + +HA + CP
Sbjct: 11 GSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSY 70
Query: 56 ------------------------------KIKLKLTVQK-------------------E 66
++++ L+ + E
Sbjct: 71 LQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRRE 130
Query: 67 VLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMD 126
V V++EQ+ V + Q+ PDH ++ P +++
Sbjct: 131 VFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDHSSSSTA--------RPPSPSRVAAAP 182
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++FFF RSHA + V+F+ V P Q++ KQLVS TKS K+T SVEI I
Sbjct: 183 GGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHTFSVEICPICRE 242
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
+ +LG LGP V+C KVTN+IALLDP TLR +L+ +Y FKA TS+Q
Sbjct: 243 DLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQ 302
Query: 236 LVEYIVLDVKVASTE-----------------------NDTILSTRTHLGHLLILGDYAI 272
LVEYIVLD++ S E NDT+ + RTHLGHLL GD A+
Sbjct: 303 LVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHLGHLLNPGDLAL 362
Query: 273 GYDLHEANQNDIELEN---YKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
GYDL+ AN ND +++ SL P+ I +KKS+ ++ + + KLK L ME D
Sbjct: 363 GYDLYGANLNDDDMDTAMMRHSL--PEVILVKKSFAKRPRTRRW-----KLKRLPMEEDA 415
Query: 330 -SKCGADREKVNNEYEEFLRDL---------------------MASVTDKEDVPSVPLDY 367
+K + EK +EYEEFLRDL MAS T +DVP+VP++
Sbjct: 416 VNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMAS-TIGDDVPTVPIEE 474
Query: 368 LLADL 372
L+ DL
Sbjct: 475 LIEDL 479
>gi|357494355|ref|XP_003617466.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355518801|gb|AET00425.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 476
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 192/410 (46%), Gaps = 106/410 (25%)
Query: 8 FAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK----------- 56
A T+ CC+C + N +NMCV CL+S+ +ITE L K +T C +
Sbjct: 12 LATFHTIPCCQCASPLELNTANMCVKCLRSKTNITEGLLKKLRLTHCTECECYLQPPTWI 71
Query: 57 ------------------------------------------IKLKLTVQKEVLEGVIVE 74
IK+K+ VQKEV+ G I+E
Sbjct: 72 KLIPQSKQFLAFCLKKLEQNMKFKRVRLVHAETLPSEPDSKIIKIKVFVQKEVINGTILE 131
Query: 75 QSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPAR 118
QS VV + N C + + + W A VQL + I KH
Sbjct: 132 QSYVVEYVQYNRICEDCTR--VNANANQWSAVVQLRQHVSHMRSIFDLEQAILKHGVGRN 189
Query: 119 ATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSV 178
+IKKM GI+FFF S A KFV+FV VP + + K+LVSR KS + KYT SV
Sbjct: 190 VVRIKKMKQGIDFFFDRESCAKKFVDFVKAQVPVKICNGKELVSRDKKSNDYNYKYTFSV 249
Query: 179 EISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPF 227
EI + A +LGN+GP V+CT+VTN+IAL DP T C+L D YWR+PF
Sbjct: 250 EICPVCREDLIFLPPKVASSLGNIGPIVVCTRVTNTIALFDPITSGRCFLVGDVYWRAPF 309
Query: 228 KALHTSRQLVEYIVLDVKVASTE-----------------------NDTILSTRTHLGHL 264
K+L TS++LVEY+VLDV+ +E NDT + +THLG+L
Sbjct: 310 KSLLTSKELVEYVVLDVEEVHSEVTVDGKKFGLANVEVARVKDFGKNDTRFNIKTHLGYL 369
Query: 265 LILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRK 314
L GD+A GYDL N D E+E + I IKK Y+EK +K K
Sbjct: 370 LKFGDHAFGYDLCGVNSGDSEIE-LAEYIGGGAILIKKRYEEKRHKKRGK 418
>gi|440796559|gb|ELR17668.1| RNA binding protein [Acanthamoeba castellanii str. Neff]
Length = 508
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 143/439 (32%), Positives = 207/439 (47%), Gaps = 104/439 (23%)
Query: 10 VRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------- 55
V T+ CC CG + NASNMCVTC++ +VDITE + K+ I C
Sbjct: 20 VAATILCCICGTNIEPNASNMCVTCIRGQVDITEGIPKNIIIHSCKHCGRYLVPPNAWVY 79
Query: 56 -------------------------------------KIKLKLTVQKEVLEGVIVEQSDV 78
++K+K+TVQKEV I++Q V
Sbjct: 80 CELESRELLTFCLKRIKGMNKVKLIDAGFVWTEPHSRRLKVKITVQKEVFTSTILQQVFV 139
Query: 79 V--MSRNITCVNLVPGFMQTGPDH-WDAAVQL--------------ELIQKHDAPARATK 121
+ + + + C P + DH W A VQ +LI KH A +
Sbjct: 140 IEFVVQMMQC----PACAASFTDHTWQAVVQARQKVDHKRTFLYLEQLILKHSAHTNTIR 195
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+M G++F+F RSHA KFV+F+ V P + + +QLVS KS YT S EI
Sbjct: 196 IKEMPDGLDFYFGHRSHAAKFVDFLQAVTPLRYKTSEQLVSHDAKSNIFNYHYTFSAEIV 255
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A LGN+ P V+ +KV+N I ++DP TL+ + A YW+ PF+A+
Sbjct: 256 PICRDDLVCLPRKLAQQLGNISPLVLASKVSNLIHMIDPNTLQMIEIPAPVYWQDPFRAI 315
Query: 231 HTSRQLVEYIVL---------------DVKVASTE----NDTILSTRTHLGHLLILGDYA 271
T + L E+IVL DV+VA T NDT+ RTHLG L GDYA
Sbjct: 316 STKQNLTEFIVLDITTSGAPRGKHLLADVQVARTRDFGNNDTMFYVRTHLGTYLNPGDYA 375
Query: 272 IGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSK 331
+GYDL N N+ +L + PD I ++K+Y + ++ + + P E E D ++
Sbjct: 376 LGYDLTSQNFNEADLGGLRGRQVPDVILVRKTYPARRRKPRNRHWKVRQLPKE-EQDNAR 434
Query: 332 CGADREKVNNEYEEFLRDL 350
G D +K N++YE F+++L
Sbjct: 435 RG-DADKQNHDYETFMQEL 452
>gi|384248530|gb|EIE22014.1| NMD3-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 540
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 171/502 (34%), Positives = 231/502 (46%), Gaps = 150/502 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK-------- 56
V CC CG+++ N SNMCV C++S+VDITE LQK I C PK
Sbjct: 24 VLCCLCGVSIPPNPSNMCVNCIRSQVDITEGLQKQVTILWCKECERYLQPPKHWVRAAIE 83
Query: 57 ----------------------------------IKLKLTVQKEVLEGVIVEQSDVV--- 79
+K+KLT+Q EV+ G I++Q+ VV
Sbjct: 84 SKELLTFCIKRLKGLQKVKLVDAGFIWTEPHSRRLKVKLTIQAEVMNGAILQQTFVVEYV 143
Query: 80 ----MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
M + T N T + W A Q+ +LI K+D +
Sbjct: 144 VEPHMCMDCTRAN-------TNSNVWTACAQVRQHTGHKRTFFYLEQLILKYDVDQQCIS 196
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK M G++FFFS R+HA+KF++F VP + RH+KQLVS + KYT SVEI
Sbjct: 197 IKDMHEGVDFFFSNRAHALKFIDFTQNHVPIKYRHDKQLVSHNEHASTYNYKYTFSVEIV 256
Query: 182 AI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I +A +LG GP +CT+V+N++ L D TLR +DA+ YWR P++ +
Sbjct: 257 PICRDDLVCLPPKAAASLGGFGPLALCTRVSNTLTLTDTQTLRSVQIDANTYWRYPYRPV 316
Query: 231 HTSRQLVEYIVLDVKVAST--------------------ENDTILSTRTHLGHLLILGDY 270
TSRQLVE++VLDV+ A+ ND RTHLGHLL GD
Sbjct: 317 VTSRQLVEFVVLDVEPAAPSQNSRFLLADVQVAKASDFGRNDRTFFVRTHLGHLLHAGDS 376
Query: 271 AIGYDLHEANQNDIELEN--YKSLVPPDTIKIKKSYKEKNQRKHR--KPNPPKLKPLEME 326
A+GYD+ AN + EL+ K L PD I ++KSY+EK +R+ + KLK + ME
Sbjct: 377 ALGYDMSTANTVEPELDAAVAKGLQVPDIILVRKSYEEKRRRRKARGEQRAWKLKRMAME 436
Query: 327 VD--------GSKCGA------DREKVNNEYEE--FLRDLMA------------------ 352
+ G A D E+ E EE LR MA
Sbjct: 437 AEEEPGTSGRGRDARAAPRHEQDLERFMQELEEDPELRAKMALYRDPAYNPVAEAERRAA 496
Query: 353 SVTDKE--DVPSVPLDYLLADL 372
++TD E DVP VPL+ LL DL
Sbjct: 497 AMTDDEDGDVPEVPLEELLDDL 518
>gi|255089002|ref|XP_002506423.1| predicted protein [Micromonas sp. RCC299]
gi|226521695|gb|ACO67681.1| predicted protein [Micromonas sp. RCC299]
Length = 540
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 203/442 (45%), Gaps = 105/442 (23%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V CC CG+ M N + MCV C++S+VDIT+ +QK + C
Sbjct: 13 VLCCMCGVGMPPNPAGMCVDCIRSQVDITDGIQKQCTVLYCNQCARYLQPPRHWIRADLE 72
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSR 82
++K+KLTVQKEVL G I++Q+ VV
Sbjct: 73 SKELLTFCIKRVKGLGKVKLTDAGFIWTEPHSKRLKIKLTVQKEVLNGAILQQTFVVEFV 132
Query: 83 NITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHG 128
+ D W A VQ+ +LI KH A IK G
Sbjct: 133 VEWHMCDACSRAAANADQWTACVQVRQKVEHKRTFLFLEQLILKHGMEANTIGIKSQPDG 192
Query: 129 IEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN- 187
++F++ RSH +K ++F+ +VVP ++RH+KQLVS + +YT VEI + +
Sbjct: 193 LDFYYGSRSHGLKLLDFLQQVVPVRARHDKQLVSHDANNNTYNYQYTFMVEIVPVCKEDI 252
Query: 188 ----------LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLV 237
LG +GP ++ T+V S L DP TLR ++ ADQY+RSP+K + +++ +
Sbjct: 253 VCLPHKVSLGLGGVGPIMLVTRVGASFQLTDPSTLRQIWVAADQYYRSPYKPIGSAKMMT 312
Query: 238 EYIVLDVKVASTE----------------------NDTILSTRTHLGHLLILGDYAIGYD 275
EYIVLD++ A ND IL +THLGH L GD A GYD
Sbjct: 313 EYIVLDIEPADMGRQRAGKYLLADVQVARLADFGVNDVILHAKTHLGHHLNPGDTAFGYD 372
Query: 276 LHEANQNDIELENYKSLVP-PDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV------D 328
L D ELE YK V PD + +KKSY+EK +R+ +K K M++
Sbjct: 373 LASLQIVDPELEKYKHGVQLPDVLLVKKSYQEKRRRRRQKGVGRGWKLQRMDIAEEEAAG 432
Query: 329 GSKCGADREKVNNEYEEFLRDL 350
G+K + E+ N+ E F+++L
Sbjct: 433 GAKGAREEERRANDEELFMQEL 454
>gi|66824611|ref|XP_645660.1| 60S ribosomal export protein [Dictyostelium discoideum AX4]
gi|74858119|sp|Q55BF2.1|NMD3_DICDI RecName: Full=60S ribosomal export protein NMD3
gi|60473844|gb|EAL71783.1| 60S ribosomal export protein [Dictyostelium discoideum AX4]
Length = 530
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 206/445 (46%), Gaps = 113/445 (25%)
Query: 11 RKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------------- 54
+ + CC CG+ + +N SNMCV C+KS+VDITE + K I C
Sbjct: 9 QANILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWCRGCARYLQPPNHWAIA 68
Query: 55 -----------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV 79
++K+KLT+QKEV I++Q
Sbjct: 69 ELESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSAILQQ---- 124
Query: 80 MSRNITCVNLVPGFMQ-------TGPDHWDAAVQL--------------ELIQKHDAPAR 118
I + + Q D W++ VQL +LI KH+A ++
Sbjct: 125 ----IFIIEFIVQGQQCDKCQKFEAKDTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQ 180
Query: 119 ATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSV 178
IK+ G++FFFS R+HA+KFVEF+ + P +++ +QL+S ++ KYT SV
Sbjct: 181 TLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDEQNNAANYKYTFSV 240
Query: 179 EISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPF 227
EI +S AH LGN+GP V+ TKV+N I +DP TL + A +W SPF
Sbjct: 241 EIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLHTGEISALTFWNSPF 300
Query: 228 KALHTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILG 268
+AL + +QLVE+ VLDV + ND I R+HLG++L G
Sbjct: 301 RALSSYKQLVEFTVLDVNLTGATRGRYALSDIQLMRSADFGANDNIYDIRSHLGNILNPG 360
Query: 269 DYAIGYDLHEANQNDIELENY-KSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
D A+GYD+ +N D +L K+ PD + +KK+Y KN + ++ K P E
Sbjct: 361 DLALGYDVASSNFPDSDLAGMKKNQQLPDFVLVKKTYPSKNDFRFKRHWYFKEIPKEGIE 420
Query: 328 DGSKCGADREKVNNEYEEFLRDLMA 352
+ K D ++ + EEFLR++ A
Sbjct: 421 NPKKFEID--QMERDREEFLREIEA 443
>gi|170108838|ref|XP_001885627.1| 60S ribosomal export protein NMD3 [Laccaria bicolor S238N-H82]
gi|164639503|gb|EDR03774.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 558
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 141/457 (30%), Positives = 205/457 (44%), Gaps = 128/457 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ C CG +V N +N+CV+CL++ VDITE + K A+++ C
Sbjct: 12 ILCADCGTPIVPNTANLCVSCLRNTVDITEGIPKQASVSFCRNCERFLSPPQAWALAQPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSD----- 77
++++ +T+QKEVL I+EQ+
Sbjct: 72 SRELLSICLKKLKGLNKVRLTDAHFIWTEPHSKRLRVAMTIQKEVLTNTILEQTFEIEYL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C L + W A VQ+ +LI KH+A +K
Sbjct: 132 VQHGQCPDCAKLA------AKNTWKALVQVRQKVHHKRTFLYLEQLILKHNAQKDTISVK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++FF+S RSHA+K VEF+G VVP +S+ +QL+S T + KYT SVEI I
Sbjct: 186 EVRDGLDFFYSSRSHALKMVEFLGSVVPIRSKASEQLLSSDTHTNTANFKYTYSVEIVPI 245
Query: 184 -----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A L N+ P +C +V NSI LLDP TL+ C + + YWR+PF +L +
Sbjct: 246 CKDDLVCIPLKQARQLSNISPLTVCVRVGNSIQLLDPATLQSCDIPSQVYWRTPFDSLAS 305
Query: 233 SRQLVEYIVLDVK---------------VASTENDTILS------------TRTHLGHLL 265
LVE+ VLD++ V + E+D ++ TRTHLG +L
Sbjct: 306 VTDLVEFTVLDIEPDHTKKTKGKHIMADVQADEDDGLMDYEDQGLTNQIYHTRTHLGAIL 365
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
GD +GY L AN N + + PD I +KK+Y N+RK K KL+ +
Sbjct: 366 QPGDAVLGYHLTNANYNSDDFASLPVGRIPDIILVKKTY--PNRRKKNKARKWKLRSIAK 423
Query: 326 E------------VDGSKCGADREKVNNEYEEFLRDL 350
E V G G D +KV +YE FLRDL
Sbjct: 424 EAGEEGETSGARGVVGRMGGRDHKKVEEDYELFLRDL 460
>gi|452820451|gb|EME27493.1| nonsense-mediated mRNA decay protein 3 [Galdieria sulphuraria]
Length = 484
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 203/449 (45%), Gaps = 105/449 (23%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
T+ CC CG+ + N SNMCV C++S VDITE++ K + C
Sbjct: 23 TILCCTCGVPISPNPSNMCVNCIRSRVDITETIPKQITLYFCKFCSKYHVPPSNWVYCEP 82
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
+IK+KLTVQKEV I++QS +V
Sbjct: 83 ESKELLALCVARIRGLNKLHLVDANFIWTEPHSRRIKVKLTVQKEVFNHTILQQSFIVE- 141
Query: 82 RNITCVNLVPGF----MQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
CV+ + D W+A VQ+ +LI KH+A +K
Sbjct: 142 ---YCVDYQQCYECRAKSAKMDPWEAVVQVRQRADHKKTFYFLEQLILKHNAHGNTLSLK 198
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++F+F +S A+KFV+F+ VVP + ++ LVS + K KY+ S E+ +
Sbjct: 199 TLRDGLDFYFPNKSAALKFVDFLHHVVPVRMKNSDHLVSHDPHNTTYKYKYSFSAELPPV 258
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
+ +LG LGP V+ +KV+ ++ +DP TL+ L QYW+ PF +L T
Sbjct: 259 CRDDLVCLPKKVSTSLGGLGPLVLVSKVSQNLCFIDPLTLQTGELSGYQYWKYPFLSLLT 318
Query: 233 SRQLVEYIVLDVKVASTEN-------------------DTILSTRTHLGHLLILGDYAIG 273
SR+LVE+ VLD ++ D R+H+ L GD +G
Sbjct: 319 SRRLVEFTVLDCELTGESQKKYCMGDVTVSRSSDLGITDRQFYIRSHVAKFLKAGDLVLG 378
Query: 274 YDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCG 333
YDL AN ND L+ Y+SL PD I ++K+Y KNQ K R+ +L + +
Sbjct: 379 YDLESANYNDSVLDEYRSLQLPDVILVRKTYPTKNQAKRRRFKLKRLAKKASQNSAMQMD 438
Query: 334 ADREKVNN--EYEEFLRDLMASVTDKEDV 360
++ +N E+EEFL+DL + + ++
Sbjct: 439 SEHNDYDNPEEFEEFLQDLEQDIELRSNI 467
>gi|145354625|ref|XP_001421580.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581818|gb|ABO99873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 507
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/395 (30%), Positives = 186/395 (47%), Gaps = 103/395 (26%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
+V CC C I M N S MCV C++++VDITE + K+ +T C
Sbjct: 1 SVLCCLCAIPMHPNPSGMCVECVRTQVDITEGISKNCVVTYCSQCERYLQPPKHWIRADL 60
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
++K KLT+QKEVL G I++Q+ V +
Sbjct: 61 ESKELLTFCIKRIKGLQKVKLVDAGFVWTEPHSKRLKTKLTIQKEVLNGAILQQTFV--T 118
Query: 82 RNITCVNLVPGFMQTGP--DHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + ++ D W+A VQ+ ++I KH A IK
Sbjct: 119 EFVVEWRMCDACARSAANSDQWNACVQVRQKVEHKRTFLFLEQMILKHGMERDAIGIKSQ 178
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA 185
G++F++ RSH ++FV+F+G VV +SR +KQLVS S ++T VEI +
Sbjct: 179 PDGLDFYYGHRSHGLRFVDFLGSVVATRSRGDKQLVSHDANSNTYNYRFTFFVEIVPVCK 238
Query: 186 HNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
+L G++GP ++CT+V+NS+ DP T+R ++D ++YWR PF+A T++
Sbjct: 239 EDLVVIPFKLSKEFGSVGPVMLCTRVSNSLQFTDPVTMRQIWIDQEKYWRQPFRAAATAK 298
Query: 235 QLVEYIVLDVKVASTE--------------------NDTILSTRTHLGHLLILGDYAIGY 274
Q++EY++LDV+V + NDT +THLG++L GD A+GY
Sbjct: 299 QMIEYVILDVEVDQSTRQGKLCMADVEVARSSDFGVNDTTFFVKTHLGNILQAGDTALGY 358
Query: 275 DLHEANQNDIELENYKSL---VPPDTIKIKKSYKE 306
DL D E+E Y V PD +KKSY E
Sbjct: 359 DLTNLQIVDPEMEKYSGKHQGVVPDVFLVKKSYAE 393
>gi|356541613|ref|XP_003539268.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal export protein
NMD3-like [Glycine max]
Length = 417
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 164/316 (51%), Gaps = 89/316 (28%)
Query: 30 MCVTCLKSEVDITESLQKHANITPCPK----------IKLKL-----------TVQKEV- 67
CV CL+ EVDITE L K + CPK +KL+L +QK +
Sbjct: 90 FCVKCLRLEVDITEGLLKRLVLVHCPKCQSCNHQEVGVKLQLESKELLTFCLKKLQKNLN 149
Query: 68 -------------------------------LEGVIVEQS---DVVMSRNI--TCVNLVP 91
L G I+EQS + V ++ +C
Sbjct: 150 SNKVRLVHAEFIWTEPHSRRVKVKVKVQKEVLNGAILEQSYPMEYVQQEHMCESCSR--- 206
Query: 92 GFMQTGPDHWDAAVQLE--------------LIQKHDAPARATKIKKMDHGIEFFFSGRS 137
+Q PD W AAV L LI KH A A A +IK+++ GI+FFFS S
Sbjct: 207 --VQANPDQWVAAVXLRQHVSHRRTFFYLEXLILKHGAIATAIRIKQIEQGIDFFFSNXS 264
Query: 138 HAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AH 186
H VKFVEF+G++ +SRH+KQLVS KS N KYT SVEI+ I A
Sbjct: 265 HGVKFVEFIGKIALVRSRHDKQLVSHDPKSNNYNXKYTFSVEINPIFREDLICVPPRIAA 324
Query: 187 NLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
LGN+GP VI TKVTN+IALLDPFTLRHC++D DQYWR+ FK+L TSRQLV+YIVLDV+
Sbjct: 325 GLGNIGPLVIXTKVTNNIALLDPFTLRHCFIDVDQYWRASFKSLLTSRQLVDYIVLDVET 384
Query: 247 ASTENDTILSTRTHLG 262
S+E TI T+ L
Sbjct: 385 VSSEV-TIGGTKYRLA 399
>gi|427789331|gb|JAA60117.1| Putative 60s ribosomal export protein nmd3 [Rhipicephalus
pulchellus]
Length = 511
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 154/513 (30%), Positives = 218/513 (42%), Gaps = 139/513 (27%)
Query: 2 VQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
++AAG A + CC+CG+ + N SNMCV CL++ VDITE + K I C
Sbjct: 5 IEAAGS-AGECRILCCQCGLPIEPNPSNMCVNCLRNLVDITEEIPKQGTIYFCRGCERYL 63
Query: 56 ---------------------------------------------KIKLKLTVQKEVLEG 70
+IK+KLTVQKEV+ G
Sbjct: 64 QPPAHWIYATLESRELLGLCLKKIRGLSSVRLVDAGFVWTEPHSRRIKVKLTVQKEVIGG 123
Query: 71 VIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHD 114
+++Q VV M + C N + D W A VQ+ +LI KH
Sbjct: 124 TVLQQVFVVEFMINHQMCDNC---HRREAKDFWRALVQVRQKVQHKKTFFYLEQLILKHQ 180
Query: 115 APARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKY 174
A IK G++F+FS + A K V+F +VP + +QL+S S K+
Sbjct: 181 AHKDCLNIKAHHDGLDFYFSKKDEARKLVDFFQTMVPCKYIMSQQLISHDIHSNTFNYKH 240
Query: 175 TCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW 223
T SVEI+ + A +LG++ IC +VT++I LLDP TL+ L + Q+W
Sbjct: 241 TFSVEIAPVCKDDVICLPPAVARSLGSMNQICICLRVTSAIHLLDPATLQVSELSSQQFW 300
Query: 224 RSPFKALHTSRQLVEYIVLDVKVASTENDTILS--------------------------- 256
R PF AL T +QL EY+V+D+ + T+ +
Sbjct: 301 RQPFGALCTPKQLTEYVVMDINFVKDVDRTVFAGQGKLSFRHVLADAWVIRACELGTHEN 360
Query: 257 ---TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHR 313
T+THLGHLL GD A+G+DL AN ND E KS P+ + +KK Y ++ R R
Sbjct: 361 YIHTKTHLGHLLKPGDSAMGFDLANANINDTHFEKLKSEKIPEVVLVKKVYGDRMSRCQR 420
Query: 314 KPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL------------------MASVT 355
+ + ++ME D S V +Y +FL DL +A T
Sbjct: 421 RRWKLQRLQVDMETDTS-------SVARDYTDFLEDLEEDAAYRQNVNIYKDNDKIAVDT 473
Query: 356 DKE--DVPSVPLDYLLADLDSSDKEEGDDSMIE 386
D E D P + L +L DL D GD E
Sbjct: 474 DDEDGDAPRITLQEMLDDLQLEDDPMGDGGNCE 506
>gi|330790753|ref|XP_003283460.1| hypothetical protein DICPUDRAFT_147142 [Dictyostelium purpureum]
gi|325086570|gb|EGC39957.1| hypothetical protein DICPUDRAFT_147142 [Dictyostelium purpureum]
Length = 518
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 206/442 (46%), Gaps = 113/442 (25%)
Query: 12 KTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC----------------- 54
K + CC CG+ + +N SNMCV C+KS+VDIT+ + K I C
Sbjct: 2 KKILCCMCGVLIPANPSNMCVDCIKSQVDITDGIPKQLTIQWCRGCDRYLQPPNHWAIAD 61
Query: 55 ----------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVM 80
++K+KLT+QKEV I++Q
Sbjct: 62 LESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSAILQQ----- 116
Query: 81 SRNITCVNLVPGFMQ-------TGPDHWDAAVQL--------------ELIQKHDAPARA 119
I V V Q D W++ VQL +LI KH+A ++
Sbjct: 117 ---IFIVEFVVQGQQCDKCQKFEAKDTWNSVVQLRQKVDHKRTFLFIEQLILKHNAHSQT 173
Query: 120 TKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVE 179
IK+ G++FFFS R+HA+KFV+F+ + P +++ +QL+S ++ K+T SVE
Sbjct: 174 LNIKEKPDGLDFFFSNRNHAMKFVDFISCITPVKTKKSEQLISSDEQNNAANYKFTFSVE 233
Query: 180 ISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFK 228
I +S AH LGN+GP V+ TKV+N I +DP TL+ + A +W SPF+
Sbjct: 234 IVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLQTGEISALTFWNSPFR 293
Query: 229 ALHTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILGD 269
AL + +QLVE+ +LDV + ND + R+HLG++L GD
Sbjct: 294 ALSSYKQLVEFTILDVNLTGETRGRFALADIQLMRSVDFGANDNMHDIRSHLGNILNPGD 353
Query: 270 YAIGYDLHEANQNDIELENY-KSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
A+GYD+ + ND +L K+ PD + +KK+Y KN + ++ K +E E
Sbjct: 354 LALGYDVSTSIYNDSDLIGLKKNKYLPDFVLVKKTYPGKNDFRFKRHY--YYKQIEKEGI 411
Query: 329 GSKCGADREKVNNEYEEFLRDL 350
+ D E++ + E+FL ++
Sbjct: 412 ENPKKFDIERMERDKEDFLNEI 433
>gi|346471561|gb|AEO35625.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 148/496 (29%), Positives = 210/496 (42%), Gaps = 138/496 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N SNMCV CL++ VDITE + K I C
Sbjct: 16 ILCCQCGVPIEPNPSNMCVACLRTAVDITEGIPKQGTIYFCRGCERYLQPPAQWVYATLE 75
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--M 80
+IK+KLTVQKEVL G +++Q VV M
Sbjct: 76 SRELLGLCLKKIRGLNTVRLIDANFVWTEPHSRRIKVKLTVQKEVLGGTVLQQVFVVEFM 135
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ C + D W A VQ+ +LI KH A IK
Sbjct: 136 VNHQMCEKC---HRREAKDFWRALVQVRQKVQHKKTFFYLEQLILKHQAHKDCLNIKACH 192
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++F+F+ + A K V+F +VP + +QL+S S K+T SVEI+ +
Sbjct: 193 DGLDFYFTKKDEARKLVDFFQIMVPCKCVTSQQLISHDIHSNVFNYKHTFSVEIAPVCKD 252
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
A +LG++ IC +VT++I LLDP TL+ L + Q+WR PF AL + +Q
Sbjct: 253 DVVCLPPAVARSLGSMSQICICLRVTSAIHLLDPTTLQVSELTSQQFWRQPFSALCSPKQ 312
Query: 236 LVEYIVLDVKVASTENDTILS------------------------------TRTHLGHLL 265
L EY+V+D+ + T+ + TRTHLGHLL
Sbjct: 313 LTEYVVMDINFVKDVDRTVFAGQGKLSFRHVLADAWIIRSCELGTHENYIHTRTHLGHLL 372
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
GD A+G+DL AN ND E KS P+ + +KK Y ++ R R+ + ++M
Sbjct: 373 KPGDSAMGFDLANANINDANFEKLKSEKIPEVVLVKKVYGDRMSRCQRRRWKLRRLQVDM 432
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL------------------MASVTDKE--DVPSVPL 365
E D S V +Y +FL DL +A TD E D P + L
Sbjct: 433 ETDTS-------SVARDYTDFLEDLEEDAGYRQNVNIYKDSDKIAVDTDDEDGDAPRITL 485
Query: 366 DYLLADLDSSDKEEGD 381
+L DL D GD
Sbjct: 486 QEMLDDLQLEDDPMGD 501
>gi|392561454|gb|EIW54635.1| NMD3-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 554
Score = 190 bits (483), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 141/463 (30%), Positives = 202/463 (43%), Gaps = 134/463 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+CV CL++ VDITE + K A+++ C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNSVDITEGIPKQASVSYCRNCERFLSPPTSWTIALPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSD----- 77
++++ LT+QKEVL I+EQ
Sbjct: 72 SQELLAICLKKLKGLNKVRLTEAHFIWTEPHSKRLRVSLTIQKEVLTATILEQVFEIEYL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C L + W A VQ+ +LI KH A +K
Sbjct: 132 VQYGQCPDCTKL------AAKNTWKALVQVRQKVPHKRTFLFLEQLILKHGAQKDTISVK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++FF++ RSHA K VEF+ VVP +S+ +QL+S T + KYT SVEI +
Sbjct: 186 EVRDGLDFFYAQRSHAQKMVEFLAGVVPVRSKASEQLLSTDTHTNTANFKYTYSVEIIPV 245
Query: 184 SAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
+L N+ P IC +V NS+ LLDP TL+ C + A YWR+PF+AL T
Sbjct: 246 CKDDLVCIPPKLARQQSNISPLAICVRVGNSLHLLDPSTLQVCEVTAPVYWRTPFEALAT 305
Query: 233 SRQLVEYIVLDVKVA---------------------------------STENDTILSTRT 259
LVE+ VLDV+ + S + I TRT
Sbjct: 306 VTDLVEFTVLDVEPSGQTRGKWVLADAQVALSGAFRSHAAGEDGMDFESAMAEQIFHTRT 365
Query: 260 HLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
HLG +L GD A+GY L AN N + + PD + +KK+Y N+RK KP +
Sbjct: 366 HLGAILQPGDSALGYFLTNANFNSDDYAALPAHRIPDIVLVKKAY--PNRRKKNKPRAWR 423
Query: 320 LKPLEME------------VDGSKCGADREKVNNEYEEFLRDL 350
L+ + E V G G D++KV +YE FLR+L
Sbjct: 424 LRSIAKEAGEEGETSGARGVVGRMGGRDQKKVEEDYEIFLREL 466
>gi|291231611|ref|XP_002735759.1| PREDICTED: NMD3 homolog [Saccoglossus kowalevskii]
Length = 507
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 154/516 (29%), Positives = 224/516 (43%), Gaps = 142/516 (27%)
Query: 1 MVQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----- 55
MV +G R + CC+CGI + SN +NMCV+C++++VDITE + K I C
Sbjct: 4 MVGESGTTQGR--ILCCQCGIAIESNPANMCVSCIRTQVDITEGIPKQGVIYFCKNCERY 61
Query: 56 ----------------------------------------------KIKLKLTVQKEVLE 69
++K+KLT+QKEVL
Sbjct: 62 LQPPESWVVCTLESRELLSLCLKKLKGLNKVNLVDAGFIWTEPHSKRLKVKLTIQKEVLG 121
Query: 70 GVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKH 113
G +++Q VV M C + D W A VQ+ +LI KH
Sbjct: 122 GTVLQQVFVVEFMVHYQMCSDC---HRVEAKDFWKACVQVRQKTTHKKTFFYLEQLILKH 178
Query: 114 DAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCK 173
A IK G++F++ G+ A K VEF+ VVP + + ++L+S T + K
Sbjct: 179 RAHTSTVNIKAHHDGLDFYYEGKQDARKLVEFLQTVVPCRYQTSQRLISHDTHNNTYNYK 238
Query: 174 YTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQY 222
T SVEI I A +LGN+G +C +V+N I ++DP +L+ + A Y
Sbjct: 239 TTYSVEIVPICKDNIVCLPPKLAQSLGNIGQICLCQRVSNLIHIIDPTSLQIADVTAPVY 298
Query: 223 WRSPFKALHTSRQLVEYIVL--------------------------DVKVASTE----ND 252
WR+PF +L + L EYIVL DV VA ++ ND
Sbjct: 299 WRTPFNSLCELKNLTEYIVLQIEPIAMKDMRHQKGQGAKSYKHILADVWVARSQDLGIND 358
Query: 253 TILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKH 312
TRTHLGHLL GD +G+D AN ND + K+ PD I +KKSY +K +RK
Sbjct: 359 AQFHTRTHLGHLLNPGDTVLGFDFLNANVNDQNFDKVKAERLPDVILVKKSY-DKQKRKL 417
Query: 313 RKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLM--------------------A 352
R+ KL+ + D D +K+ +Y EFL DL
Sbjct: 418 RR--NWKLRQMSKHSD----ALDDDKMERDYSEFLEDLEDDPEYRQHVNIYMDRNKSIPV 471
Query: 353 SVTDKEDVPSVPLDYLLADLDSSDKEEGDD--SMIE 386
+D +D P + L +L DL+ S+ G + +M+E
Sbjct: 472 ESSDDDDAPKISLQEMLEDLNISEDATGGEGAAMLE 507
>gi|281208056|gb|EFA82234.1| 60S ribosomal export protein [Polysphondylium pallidum PN500]
Length = 519
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 127/399 (31%), Positives = 188/399 (47%), Gaps = 101/399 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + SN SNMCV C++S+VDITE + K I C
Sbjct: 12 ILCCLCGVVIPSNPSNMCVNCIRSQVDITEGIPKQLIIQWCRGCNRYLQPPNHWAMCELE 71
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--M 80
++K+KLT+QKEV I++Q +V +
Sbjct: 72 SRELLTLCIKRIKGLNQVKLVDAGWVWTEPHSRRLKVKLTIQKEVFSSAILQQVFIVEFV 131
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ C N F D W++ VQL ++I KH+A ++ I++
Sbjct: 132 VQGQQC-NKCQKF--EAKDTWNSVVQLRQKVDHKRTFLFLEQIILKHNAHSQTLNIRERT 188
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++F+FS ++ +KFVEF+ VP +S+ +QL+S ++ N K++ SVEI +S
Sbjct: 189 DGLDFYFSNKNQGLKFVEFISSFVPLKSKRSEQLISTDEQNNNANYKHSFSVEIVPLSKD 248
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
H LG +GP V+ KV+N I ++DP TL+ + +W PF+AL T +Q
Sbjct: 249 DLVCLSPKVMHALGGMGPVVLIYKVSNLIHVIDPNTLQMGEISPLLFWNHPFRALATHKQ 308
Query: 236 LVEYIVLDV---------------KVAST----ENDTILSTRTHLGHLLILGDYAIGYDL 276
LVE +VLDV +VA + NDT RTHLGHL GD A+G+D+
Sbjct: 309 LVELVVLDVTLTGERRGKFALADIQVARSSDFGRNDTTFFIRTHLGHLFNAGDLALGFDV 368
Query: 277 HEANQNDIELENYKS-LVPPDTIKIKKSYKEKNQRKHRK 314
AN ND E N KS P+ I +KK+Y + H K
Sbjct: 369 STANMNDNEFANIKSKQTVPEIILVKKTYLNLQRHWHTK 407
>gi|393213806|gb|EJC99301.1| NMD3-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 565
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/473 (29%), Positives = 201/473 (42%), Gaps = 146/473 (30%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG + N++N+C+ CL++ VDITE + K +++ C
Sbjct: 12 VLCADCGTLIEPNSANLCIACLRNSVDITEGIPKQGSLSFCRNCERFLSPPSAWTIAEPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSR 82
+IK+KLT+QKEV I++Q
Sbjct: 72 SRELLAICLKKLKGLNKVRLIDSGFIWTEPHSKRIKVKLTIQKEVFTSTILQQ------- 124
Query: 83 NITCVNLVPGFMQ-------TGPDHWDAAVQL--------------ELIQKHDAPARATK 121
+ V + + Q + W A VQ+ +LI KH A
Sbjct: 125 -VFQVEFIVQYTQCSECARLAAKNTWKALVQVRQKVSHKRTFLFLEQLILKHGAQKETIS 183
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
+K++ G++FF+S RSHA++ EF+ VVP +++ ++L+S T S K+T SVEI+
Sbjct: 184 VKEVRDGLDFFYSQRSHALRMTEFLNGVVPVRTKSSERLLSTDTHSNTSSYKFTYSVEIA 243
Query: 182 AI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +L N+ P +CT+V NSI LLDP TL+ + A YWR+PF+AL
Sbjct: 244 PICKDDLVCLPLKQARSLSNISPLALCTRVGNSIHLLDPATLQSVDVSAQVYWRAPFEAL 303
Query: 231 HTSRQLVEYIVLDV-----------------------KVASTEN---------------- 251
LVE+ VLDV + +ST
Sbjct: 304 AGVSDLVEFTVLDVEPSGPVKGKWVLADAQVAVNGAFRSSSTHTNEGGDADMDYDDDGTL 363
Query: 252 DTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRK 311
D I TRTHLG +L GD +GY L AN N S PD + ++K+Y N+RK
Sbjct: 364 DQIFHTRTHLGGILQPGDTVLGYHLSRANFNSDAFTALPSSRVPDVVLVRKTY--PNRRK 421
Query: 312 HRKPNPPKLKPLEME--------------VDGSKCGADREKVNNEYEEFLRDL 350
KP +LK + E V G G D++KV +YE FLRD+
Sbjct: 422 KNKPRAWRLKSMAKEEGEEATDASNARGGVIGRMGGRDQKKVEEDYELFLRDI 474
>gi|409048051|gb|EKM57529.1| hypothetical protein PHACADRAFT_138716 [Phanerochaete carnosa
HHB-10118-sp]
Length = 554
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 141/467 (30%), Positives = 209/467 (44%), Gaps = 138/467 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+CV CL++ VDITE + K A+++ C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQASVSFCRNCERFLSPPASWALARPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQ-----SD 77
++++ LT+QKEVL I+EQ
Sbjct: 72 SQELLAICLKKLKGLNKVRLTDAHFIWTEPHSKRLRVSLTIQKEVLTATILEQIFEIEYL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C L + W A VQ+ +LI KH A +K
Sbjct: 132 VQHGQCPDCAKLA------AKNTWKALVQVRQKVPHKRTFLFLEQLILKHGAQKDTISVK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++FF+S RSHA+K VEF+G VVP +S+ +QL+S T S KYT SVEI I
Sbjct: 186 EVRDGLDFFYSSRSHAIKMVEFLGGVVPIRSKASEQLLSADTHSHTANFKYTYSVEIIPI 245
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A + N+ P +C++V N++ LLDP TL+ C + A YWR+PF++L +
Sbjct: 246 CKDDLVCIPLKLAKQMANINPLTLCSRVGNTLHLLDPSTLQACEITAPIYWRAPFESLTS 305
Query: 233 SRQLVEYIVLDV---------------KVA----------------------STENDTIL 255
LVE+ VLD+ +VA S+ + I
Sbjct: 306 VTDLVEFTVLDIEPTGNSRGKNVAADAQVALSGAFKSSHPHGKDDGMMDYENSSLANQIF 365
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
TRTHLG +L GD A+GY L +N N + + S PD I +KK+Y +N+RK K
Sbjct: 366 HTRTHLGGILQPGDIAMGYFLSNSNFNSDDFASLPSHRVPDVILVKKAY--QNRRKKNKV 423
Query: 316 NPPKLKPLEMEV-DGSKCGA-----------DREKVNNEYEEFLRDL 350
KL+ + E + + G+ D++KV +YE FLR+L
Sbjct: 424 RKWKLRSIAKEAGEEGETGSGRGVVGRTGGRDQKKVEEDYELFLREL 470
>gi|301121887|ref|XP_002908670.1| 60S ribosomal export protein NMD3, putative [Phytophthora infestans
T30-4]
gi|262099432|gb|EEY57484.1| 60S ribosomal export protein NMD3, putative [Phytophthora infestans
T30-4]
Length = 524
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 205/445 (46%), Gaps = 113/445 (25%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
T+ CC C +V+NA+N CV+CLKS+VD+TE + K I C
Sbjct: 10 TILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAAELES 69
Query: 56 --------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--MS 81
++KLKLTVQKEVL +I++QS VV +
Sbjct: 70 RELLAMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKLTVQKEVLSKMIMQQSFVVTFVV 129
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
RN C F W A VQ+ +LI KH A + T I+
Sbjct: 130 RNQQCDACQASFANQS---WRAVVQVRQRVDHKRTFFFLEQLILKHRAHEKTTNIESHPD 186
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++FFFS R+HA++FV+F+ E VP + + K+L+S S K+T +VEI+ +
Sbjct: 187 GVDFFFSERNHALRFVDFLQESVPMKVKTAKKLISADNHSNTHNYKFTYAVEIAPVCKDD 246
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A LGN+ + VT+SI ++DPFT + +D+++YWR PF+AL + + +
Sbjct: 247 LVLLPVKLARMLGNMSCLCLVQSVTSSIHVVDPFTTQVAEVDSEKYWRYPFRALRSIKAM 306
Query: 237 VEYIVLD-------------------VKVASTE---------NDTILSTRTHLGHLLILG 268
+ VLD ++A E NDT T +HLG LL +G
Sbjct: 307 TDLTVLDSNPMAIPSGGGRAIRVTRKTRLADMEVVRDADFGVNDTRFRTVSHLGMLLHVG 366
Query: 269 DYAIGYDLHEANQNDIELENY--KSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE-M 325
D A GYDL A ND +L L PD + +KK + + Q++ R KLK +E +
Sbjct: 367 DSARGYDLTSAVFNDADLVPLVQSGLTLPDVVLVKKMFPRRIQKRARN---WKLKKMEGV 423
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E G AD K +YE+F+ +L
Sbjct: 424 EQAGPVRKADLSKEEQDYEQFMDEL 448
>gi|409074971|gb|EKM75358.1| hypothetical protein AGABI1DRAFT_46606 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 574
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 222/501 (44%), Gaps = 147/501 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+C CL++ VDITE + K A++ C
Sbjct: 12 VLCADCGTPIVPNSANLCAACLRNTVDITEGIPKLASVAYCRNCERFLNPPAAWTIARPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSD----- 77
++++ +T+QKE L I+EQ+
Sbjct: 72 SPELLSICLKKLKGLNKVRLTDARFIWTEPHSKRLRVAITIQKEALTNTILEQTFEIEFL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + +C L + W A VQ+ +LI KH+A ++
Sbjct: 132 VQYGQCSSCARLA------AKNTWKAMVQVRQKVPHKRTFLYLEQLILKHNAQKDTISVR 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++F++S R+HA+K VEF+ VVP +S+ +QL+S T S K+T SVEI+ I
Sbjct: 186 EVRDGLDFYYSHRNHAIKMVEFLTSVVPVRSKSSEQLLSTDTHSGTSDYKFTYSVEIAPI 245
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +LGN+ P IC ++ NS +L+DP TL+ C + YWR PF++L +
Sbjct: 246 CKDDLVCMPLKLARSLGNIHPLTICARIGNSFSLIDPATLQTCDVSQSLYWRQPFESLSS 305
Query: 233 SRQLVEYIVLDVK------------------VAST-------------------ENDTIL 255
LVE+ VLD++ +AS + +I
Sbjct: 306 VTDLVEFTVLDIEPDYSKSKGKYLMADAQVALASAFRSSGGIPEDVMMDYDTMGQTSSIF 365
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
TRTHLG +L GD A+GY L +N N E + S + PD I +KK+Y N+RK K
Sbjct: 366 HTRTHLGAILQPGDTALGYHLTNSNYNSTEFASLPSNLIPDIILVKKAY--PNRRKKSKS 423
Query: 316 NPPKLK-----PLEMEVDGS-------KCGADREKVNNEYEEFLRDLMASVTDKEDVPSV 363
KL+ P E GS G D++KV+ +YE FLRDL E+ P +
Sbjct: 424 RSWKLRSIAKEPGEEGETGSGRGVVGRLGGRDQKKVDEDYELFLRDL-------EEDPEM 476
Query: 364 --PLDYLLADLDSSDKEEGDD 382
++ A D+ D EE +D
Sbjct: 477 RAGVNLYKAKKDTEDNEERND 497
>gi|426195434|gb|EKV45364.1| hypothetical protein AGABI2DRAFT_208350 [Agaricus bisporus var.
bisporus H97]
Length = 574
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 146/501 (29%), Positives = 222/501 (44%), Gaps = 147/501 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+C CL++ VDITE + K A++ C
Sbjct: 12 VLCADCGTPIVPNSANLCAACLRNTVDITEGIPKLASVAYCRNCERFLNPPAAWTIARPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSD----- 77
++++ +T+QKE L I+EQ+
Sbjct: 72 SPELLSICLKKLKGLNKVRLTDARFIWTEPHSKRLRVAITIQKEALTNTILEQTFEIEFL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + +C L + W A VQ+ +LI KH+A ++
Sbjct: 132 VQYGQCSSCARLA------AKNTWKAMVQVRQKVPHKRTFLYLEQLILKHNAQKDTISVR 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++F++S R+HA+K VEF+ VVP +S+ +QL+S T S K+T SVEI+ I
Sbjct: 186 EVRDGLDFYYSHRNHAIKMVEFLTSVVPVRSKSSEQLLSTDTHSGTSDYKFTYSVEIAPI 245
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +LGN+ P IC ++ NS +L+DP TL+ C + YWR PF++L +
Sbjct: 246 CKDDLVCMPLKLARSLGNIHPLTICARIGNSFSLIDPATLQTCDVSQALYWRQPFESLSS 305
Query: 233 SRQLVEYIVLDVK------------------VAST-------------------ENDTIL 255
LVE+ VLD++ +AS + +I
Sbjct: 306 VTDLVEFTVLDIEPDYSKSKGKYLMADAQVALASAFRSSGGITEDVMMDYDTMGQTSSIF 365
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
TRTHLG +L GD A+GY L +N N E + S + PD I +KK+Y N+RK K
Sbjct: 366 HTRTHLGAILQPGDTALGYHLTNSNYNSTEFASLPSNLIPDIILVKKAY--PNRRKKSKS 423
Query: 316 NPPKLK-----PLEMEVDGS-------KCGADREKVNNEYEEFLRDLMASVTDKEDVPSV 363
KL+ P E GS G D++KV+ +YE FLRDL E+ P +
Sbjct: 424 RSWKLRSIAKEPGEEGETGSGRGVVGRLGGRDQKKVDEDYELFLRDL-------EEDPEM 476
Query: 364 --PLDYLLADLDSSDKEEGDD 382
++ A D+ D EE +D
Sbjct: 477 RAGVNLYKAKKDTEDNEERND 497
>gi|213511776|ref|NP_001133666.1| 60S ribosomal export protein NMD3 [Salmo salar]
gi|209154868|gb|ACI33666.1| 60S ribosomal export protein NMD3 [Salmo salar]
Length = 504
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 146/505 (28%), Positives = 218/505 (43%), Gaps = 147/505 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CGI + N +NMCV+CL++ VDI+E + K N+ C
Sbjct: 15 ILCCTCGIPIHPNPANMCVSCLRTTVDISEGIPKQVNLNFCKQCERYLQPPASWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
+IKLK+T+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKLKGNMTKVRLIDAGFLWTEPHSKRIKLKVTIQKEVMNGAILQQVFVVEF 134
Query: 82 RNITCVNLVPGFM------QTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
++ G M D W++ VQ+ +LI KH A
Sbjct: 135 -------VIQGQMCDDCHRVEAKDFWNSVVQVRQKTSHKKTFYYLEQLILKHKLHQNALN 187
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ GI+F+++ + HA K V+F+ VP +S+ ++L+S S K T S+EI
Sbjct: 188 IKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRSKTSQRLISHDIHSNTFNYKSTYSIEIV 247
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+ A +LGN+G +C +VT++I L+DP TL+ +D YWR+PF +L
Sbjct: 248 PVCKDNVVCLSPRLAQSLGNMGQVCVCARVTSTIHLIDPNTLQIAEVDGGTYWRNPFNSL 307
Query: 231 HTSRQLVEYIVLDVKV-------------------------ASTENDTI--LSTRTHLGH 263
+ RQL E+IV+D + ++E DT RTHLGH
Sbjct: 308 VSPRQLEEFIVMDTDIIRNQKLGAGAGIRSNKHTLAEVWVQKTSEMDTAQQYHCRTHLGH 367
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
LL +GD G+D +N ND L PD + IKKSY N+ K K KLK +
Sbjct: 368 LLNIGDLVQGFDFANSNVNDEFLNKMNPSHIPDVVLIKKSY---NRSKRVKRRNWKLKEM 424
Query: 324 EMEVDGSKCGADREKVNNEYEEFLRDL--------------------MASVTDKEDVPSV 363
+ + +G +R +Y++FL DL + S TD E P +
Sbjct: 425 DKDREGMAPEDER-----QYQDFLEDLEEDEALRKNVNIFRDASKIPVESDTDDEGAPQI 479
Query: 364 PLDYLLADLDSSDKE--EGDDSMIE 386
L +L DL +D EG D + E
Sbjct: 480 SLMEMLEDLSLTDATGGEGADMLTE 504
>gi|303287797|ref|XP_003063187.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455019|gb|EEH52323.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 549
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 181/395 (45%), Gaps = 103/395 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK-------- 56
V CC CG+ + N + MCV C++S+VDITE +QK + C PK
Sbjct: 13 VLCCMCGVGIPPNPAGMCVDCIRSQVDITEGIQKQCTVLYCKQCQRYLQPPKHWIRADLE 72
Query: 57 ----------------------------------IKLKLTVQKEVLEGVIVEQSDVV--- 79
+K KLT+QKEVL G I++Q+ VV
Sbjct: 73 SKELLTFCIKRVKGLQRVKLVDAGFIWTEPHSKRLKTKLTIQKEVLNGAILQQTFVVEFV 132
Query: 80 --MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
C Q P W A VQ+ +LI KH IK
Sbjct: 133 VEWHMCDACSRAAANADQARP-RWTACVQVRQKVEHKRTFLYLEQLILKHGMEENTIGIK 191
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
G++F++ RSH ++ V+F+ +VVP ++RH+KQLVS + + +YT +EI +
Sbjct: 192 SQPDGLDFYYGSRSHGLRMVDFLQQVVPVRARHDKQLVSHDANNNSYNYQYTFMMEIVPL 251
Query: 184 SAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
++ G +GP ++CT+V N++ D LR ++DA Y+R P++A+ +
Sbjct: 252 CKEDIVCLPHKVSLSYGGIGPIMLCTRVGNAMQFTDVSNLRQIWIDAAAYYRQPYRAIGS 311
Query: 233 SRQLVEYIVLDVKVAS--------------------TENDTILSTRTHLGHLLILGDYAI 272
++ VEY+VLDV++ +ND IL +THLGH L GD A+
Sbjct: 312 AKMFVEYVVLDVEIQRDVSVGRYCLADVQVARVSDFGKNDLILHAKTHLGHHLQPGDTAL 371
Query: 273 GYDLHEANQNDIELENYKSLVP-PDTIKIKKSYKE 306
GYDL D EL+ Y+ V PD + +KKSY+E
Sbjct: 372 GYDLASLQIVDPELDKYRRGVQLPDVLLVKKSYQE 406
>gi|46136489|ref|XP_389936.1| hypothetical protein FG09760.1 [Gibberella zeae PH-1]
Length = 517
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 135/488 (27%), Positives = 217/488 (44%), Gaps = 131/488 (26%)
Query: 13 TVSCCKCGITMVSNASN--MCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG + AS +C C+K VDI++ +Q+ A + C
Sbjct: 23 TILCCNCGAPIDGTASTGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLMPPTSWIVA 82
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+I++K+T+Q EV +G++++Q+ V
Sbjct: 83 SPESRELLALCLKKLRGLNKVRIVDASFIWTEPHSRRIRVKITIQDEVQDGMLLQQTFEV 142
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + P ++ + W AAVQ+ +LI KH A I++
Sbjct: 143 IY--VVAYQQCPECAKSYTANVWRAAVQVRQKVLHKRTFLFLEQLIMKHGAHKDTLNIRE 200
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
GI+FFFS R+ A KF++F+ VVP +++ ++L+S+ + K+T S E+ I
Sbjct: 201 AKDGIDFFFSQRNQAEKFIDFLNSVVPVKTKASQELISQDVHTSKASFKFTYSAELVPIC 260
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+L GN+ P ++C K+ S+ LLDP TL+ C + A YWR+PF +L +
Sbjct: 261 KDDLVALPIKMAKQSGNISPLLLCHKIGTSVYLLDPQTLQTCDISAPIYWRAPFLSLTDT 320
Query: 234 RQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGY 274
R+LVE++V+D++ T+ ND TRTH+G LL GD A+GY
Sbjct: 321 RELVEFVVMDIETTGTQKGKWTLAEATVARASDLGVNDRTYFTRTHMGRLLQPGDSAMGY 380
Query: 275 DLHEANQNDIELE-----NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
L N+ E E N S PD I IKK Y + + + R ++ E E+
Sbjct: 381 LLAGTVFNNTEYEAIENSNTYSSTIPDVILIKKHYPGRRKNRKRNWQLKRMNKDEGELLP 440
Query: 330 SKCGADREKVNNEYEEFLRDL------------------------MASVTDKEDVPSVPL 365
K AD+E+++ EYE+FLRD+ +A + ++ P V +
Sbjct: 441 KK--ADQERMDQEYEQFLRDVEEDEELRATLALYKAQKRAEEEMSVAETEEDDEAPHVDM 498
Query: 366 DYLLADLD 373
D LL D D
Sbjct: 499 DELLDDFD 506
>gi|395325924|gb|EJF58339.1| NMD3-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 552
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 204/466 (43%), Gaps = 137/466 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+CV CL++ VDITE + K A+++ C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQASVSFCRNCERFLSPPSSWVIARPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSD----- 77
++++ LT+QKEVL I+EQ
Sbjct: 72 SQELLAICLKKLKGLNKVRLTEAHFIWTEPHSKRLRVSLTIQKEVLTATILEQVFEIEYL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C L + W A VQ+ +LI KH A +K
Sbjct: 132 VQYGQCPDCTKLA------AKNTWKALVQVRQKVPHKRTFLFLEQLILKHGAQKDTISVK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++FF+S RSHA K VEF+ VVP +S+ +QL+S T + KYT SVEI+ I
Sbjct: 186 EVRDGLDFFYSSRSHAQKMVEFLSGVVPVRSKASEQLLSADTHTNTANFKYTYSVEITPI 245
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +L N+ P +C +V NS+ L+DP TL+ + A YWR+PF++L +
Sbjct: 246 CKDDLVCVPPKLARSLANISPLTLCVRVGNSLHLMDPATLQSAEITAPIYWRTPFESLAS 305
Query: 233 SRQLVEYIVLDVK---------------------------VASTENDT---------ILS 256
LVE+ VLDV+ + E+DT I
Sbjct: 306 VTDLVEFTVLDVEPSGATRGKWVLADAQVALSGAFRSHGAAGAGEDDTMDYEGGGDQIFH 365
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
TRTHLG +L GD A+GY L AN N + S PD + +KK+Y N+RK KP
Sbjct: 366 TRTHLGGILQPGDSAMGYFLTNANFNSDDFAALLSHRVPDVVLVKKAY--PNRRKKNKPR 423
Query: 317 PPKLKPL------------EMEVDGSKCGADREKVNNEYEEFLRDL 350
KL+ + V G G D++KV +YE FLR+L
Sbjct: 424 GWKLRSMAKEEGEEGETGGGRGVVGRMGGRDQKKVEEDYELFLREL 469
>gi|169851843|ref|XP_001832610.1| 60S ribosomal export protein NMD3 [Coprinopsis cinerea
okayama7#130]
gi|116506258|gb|EAU89153.1| RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 562
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 136/469 (28%), Positives = 199/469 (42%), Gaps = 138/469 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+CV CL++ +DITE + K ++ C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNTIDITEGIPKQTSVAFCRNCERFLSPPGGWTIAKPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSD----- 77
++K+ LT+QKEVL I+EQ+
Sbjct: 72 SSELLAICLKKLKGLSKVRLTDARFIWTEPHSKRLKVALTIQKEVLTNTILEQTFEIEYL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C L + W A VQ+ +LI KH+A IK
Sbjct: 132 VQYGQCPDCARLA------AKNTWRAMVQVRQKVSHKRTFLFLEQLILKHNAQKDTISIK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++FF+S RSHA+K VEF+G VVP +S+ +Q++S T + KYT SVEI +
Sbjct: 186 EVRDGLDFFYSTRSHALKMVEFLGGVVPIRSKSAEQIISSDTHTSTANFKYTYSVEIVPV 245
Query: 184 -----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +L N+ P +CT+V NS+ LLDP TL+ + A YWRSPF +L
Sbjct: 246 CKDDLVCLPLKQARSLSNISPLTLCTRVGNSLQLLDPSTLQTAEIPATLYWRSPFDSLAA 305
Query: 233 SRQLVEYIVLDVKVASTEN---------------------------------------DT 253
LVE+ VLD++ T+
Sbjct: 306 VTDLVEFTVLDIEPDRTKTRGKWVMADAQVALSGAFKSSKHRHDDSMMMDYEGNGGAPTM 365
Query: 254 ILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHR 313
I TRTHLG +L GD A+GY + +N N S PD I +KK+Y + ++
Sbjct: 366 IFHTRTHLGAILQPGDSAMGYYVSNSNFNSDAFTELPSDRIPDVILVKKAYPNRRKKHSN 425
Query: 314 KPNPPKLKPLEMEV--DGSKCGA----------DREKVNNEYEEFLRDL 350
K KL+ + E DG GA D +K+ +YE FLR++
Sbjct: 426 KARNWKLRSIAKEAGEDGDTGGARGAIGRMGGRDAKKIEEDYELFLREI 474
>gi|164658237|ref|XP_001730244.1| hypothetical protein MGL_2626 [Malassezia globosa CBS 7966]
gi|159104139|gb|EDP43030.1| hypothetical protein MGL_2626 [Malassezia globosa CBS 7966]
Length = 561
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 133/466 (28%), Positives = 201/466 (43%), Gaps = 133/466 (28%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------- 54
A ++ V C CGI + N +N CV CL++ +DITES+ + A I C
Sbjct: 7 APQRMVLCADCGIPIEPNNANRCVNCLRNSIDITESIPRQATINFCRNCERYLNPPNTWV 66
Query: 55 -------------------------------------PKIKLKLTVQKEVLEGVIVEQSD 77
++++KLTVQKEV I+E+
Sbjct: 67 IAQLESRELLAICLKKLRGLKSVRLVDANFVWTEPHSKRLRVKLTVQKEVYTSTILERCF 126
Query: 78 -----VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPAR 118
V + C L M W AAVQ+ +LI K++A
Sbjct: 127 EVEILVQYGQCPDCTRLAAKNM------WKAAVQVRQKVAHKRTFLYLEQLILKYNAHRE 180
Query: 119 ATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSV 178
+++ G++FF+ R+HA++ EF+ VVP + +QL+S + K+T SV
Sbjct: 181 TVSVQEKKDGLDFFYVQRAHAIRMCEFLASVVPVRMNKSEQLISMDVHTSQSNYKFTYSV 240
Query: 179 EISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPF 227
EI + A +LGN+G FV+ +++N I L+DP TL+ L A++YWR PF
Sbjct: 241 EIVPLCKDDLICLPLHVARSLGNIGQFVLPYRISNVIKLIDPVTLQMADLTAEKYWRDPF 300
Query: 228 KALHTSRQLVEYIVLDVKVAST-----------------------------ENDTILSTR 258
AL + ++VE++VLD++ T E+D + R
Sbjct: 301 PALCSIPEMVEFLVLDIETTGTIAHGPHGQSMSKFMAADAQVSPLHASTFGESDAVYHVR 360
Query: 259 THLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPP 318
THLGH+L GD +GY L AN N E + PD + +KKSY E+ +R R
Sbjct: 361 THLGHILNPGDTVMGYYLATANFNSDEWDAIPEERRPDVVLVKKSYPERKRRSKRN---W 417
Query: 319 KLKPLEMEVDGSKCG--------------ADREKVNNEYEEFLRDL 350
KLK + E + G D ++V +YE+FLRDL
Sbjct: 418 KLKSIAKEAEDPSAGEHVVGRGALGRRGGLDSQRVERDYEQFLRDL 463
>gi|308812484|ref|XP_003083549.1| NMD protein affecting ribosome stability and mRNA decay (ISS)
[Ostreococcus tauri]
gi|116055430|emb|CAL58098.1| NMD protein affecting ribosome stability and mRNA decay (ISS)
[Ostreococcus tauri]
Length = 427
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/370 (30%), Positives = 178/370 (48%), Gaps = 85/370 (22%)
Query: 5 AGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------- 55
AG +TV CC CG+ M N S MCV C++++VDITE + K +T C
Sbjct: 11 AGAAVDARTVLCCLCGVGMRPNPSGMCVECVRTQVDITEGISKQCVVTYCSQCERYLQPP 70
Query: 56 ------------------------------------------KIKLKLTVQKEVLEGVIV 73
++K KLT+QKE++ G I+
Sbjct: 71 KHWIRADLESKELLTFCIKRIKGLQKVKLVDAGFVWTEPHSKRLKTKLTIQKEIMGGAIL 130
Query: 74 EQSDVVMSRNITCVNLVPGFMQTGP--DHWDAAVQL--------------ELIQKHDAPA 117
+Q+ V + I + +T D W+A VQ+ ++I KH
Sbjct: 131 QQTFV--TEFIVEWRMCDACARTAANSDQWNACVQVRQKVEHKRTFLFLEQMILKHGMER 188
Query: 118 RATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSR----GTKSRNCKCK 173
A IK G++F+++ RSH ++FV+F+G VV +SR +KQLVS T
Sbjct: 189 DAIGIKSQPDGLDFYYAHRSHGLRFVDFLGNVVATRSRDDKQLVSHDANCNTYXXXXXXX 248
Query: 174 YTCSVEISAIS---AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
C ++ + + G +GP ++CT+V+N++ DP T+R +LD+++YWR PF+ +
Sbjct: 249 XVCKEDVVVLPLKLSKEFGLVGPVMLCTRVSNTLQFTDPVTMRPIWLDSEKYWRYPFRPI 308
Query: 231 HTSRQLVEYIVLDVKVASTE---------NDTILSTRTHLGHLLILGDYAIGYDLHEANQ 281
+++Q++EY+VLD+ +A E NDT RTHLG++L GD A+GYDL
Sbjct: 309 ASAKQMIEYVVLDLVMAEVEIARSSDFGVNDTTFRVRTHLGNILQAGDTAMGYDLASLQI 368
Query: 282 NDIELENYKS 291
D ELE ++
Sbjct: 369 VDPELEKSRT 378
>gi|408399668|gb|EKJ78764.1| hypothetical protein FPSE_01043 [Fusarium pseudograminearum CS3096]
Length = 517
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/441 (28%), Positives = 204/441 (46%), Gaps = 107/441 (24%)
Query: 13 TVSCCKCGITMVSNASN--MCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG + AS +C C+K VDI++ +Q+ A + C
Sbjct: 23 TILCCNCGAPIDGTASTGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLMPPTSWIVA 82
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+I++K+T+Q EV +G++++Q+ V
Sbjct: 83 SPESRELLALCLKKLRGLNKVRIVDASFIWTEPHSRRIRVKITIQDEVQDGMLLQQTFEV 142
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + P ++ + W AAVQ+ +LI KH A I++
Sbjct: 143 IY--VVAYQQCPECAKSYTANVWRAAVQVRQKVLHKRTFLFLEQLIMKHGAHKDTLNIRE 200
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
GI+FFFS R+ A KF++F+ VVP +++ ++L+S+ + K+T S E+ I
Sbjct: 201 AKDGIDFFFSQRNQAEKFIDFLNSVVPVKTKASQELISQDVHTSKASFKFTYSAELVPIC 260
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+L GN+ P ++C K+ S+ LLDP TL+ C + A YWR+PF +L +
Sbjct: 261 KDDLVALPIKMAKQSGNISPLLLCHKIGTSVYLLDPQTLQTCDISAPIYWRAPFLSLTDT 320
Query: 234 RQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGY 274
R+LVE++V+D++ T+ ND TRTH+G LL GD A+GY
Sbjct: 321 RELVEFVVMDIETTGTQKGKWTLAEATVARASDLGVNDRTYFTRTHMGRLLQPGDSAMGY 380
Query: 275 DLHEANQNDIELE-----NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
L N+ E E N S PD I IKK Y + + + R ++ E E+
Sbjct: 381 LLAGTVFNNTEYEAIENSNTYSSTIPDVILIKKHYPGRRKNRKRNWQLKRMNKDEGELLP 440
Query: 330 SKCGADREKVNNEYEEFLRDL 350
K AD+E+++ EYE+FLRD+
Sbjct: 441 KK--ADQERMDQEYEQFLRDV 459
>gi|327266844|ref|XP_003218214.1| PREDICTED: 60S ribosomal export protein NMD3-like [Anolis
carolinensis]
Length = 504
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/500 (28%), Positives = 211/500 (42%), Gaps = 137/500 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CGI + N +NMCV+CL+++VDITE + K + C
Sbjct: 15 ILCCECGIPIPPNPANMCVSCLRTKVDITEGIPKQITVHFCKQCERYLQPPGTWLQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
++K+KLTVQKEV+ G I++Q V +
Sbjct: 75 SRELLTLCLKKIKASLSRVRLIDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQ--VFLV 132
Query: 82 RNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
I + + D W A VQ+ +LI KH +IK++
Sbjct: 133 EYIVHSQMCDDCHRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKHRLHQNTLRIKEIH 192
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++F++S + HA K V+F+ VP +S+ ++L+S S K T SVEI I
Sbjct: 193 DGLDFYYSSKQHAQKMVDFLQSTVPCRSKSSQRLISHDIHSNTYNYKSTFSVEIVPICKD 252
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
A +LGN+ +C +VT+ I ++DP TL+ +D + YWR PF +L +Q
Sbjct: 253 NVVCLSPKLAQSLGNMSQICVCIRVTSGIHIIDPNTLQIAEIDGNTYWRYPFNSLFHPKQ 312
Query: 236 LVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLILG 268
L E+IV+D+ K + D RTHLGHLL G
Sbjct: 313 LEEFIVMDISRVHDRKQGAGAGMRSTKHTLAEAWVQKTSELNTDHQYFCRTHLGHLLNPG 372
Query: 269 DYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
D +G+DL N ND PD I IKKSY +++ R KLK LE + +
Sbjct: 373 DLVLGFDLVNCNLNDEFANKMNPHSIPDVILIKKSYDRSKRQRRRN---WKLKELERDRE 429
Query: 329 GSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYLL 369
G +R +Y++FL DL + S TD E +P + L +L
Sbjct: 430 GMDTDDER-----QYQDFLEDLEEDETIRKNVNIYKNSGIPVESDTDDEGIPRISLAEML 484
Query: 370 ADLDSSDKE---EGDDSMIE 386
DL S EG D + E
Sbjct: 485 EDLQISQDATGGEGADMLTE 504
>gi|17137506|ref|NP_477332.1| Nonsense-mediated mRNA 3 [Drosophila melanogaster]
gi|2894111|emb|CAA15695.1| EG:152A3.1 [Drosophila melanogaster]
gi|7290283|gb|AAF45744.1| Nonsense-mediated mRNA 3 [Drosophila melanogaster]
gi|16197917|gb|AAL13723.1| GM14705p [Drosophila melanogaster]
gi|220944802|gb|ACL84944.1| Nmd3-PA [synthetic construct]
gi|220954642|gb|ACL89864.1| Nmd3-PA [synthetic construct]
Length = 521
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 148/512 (28%), Positives = 223/512 (43%), Gaps = 147/512 (28%)
Query: 3 QAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------- 54
+ AG AV + CC+CG+ + N +NMCVTCL++ VDITE++ K A + C
Sbjct: 17 KGAGSNAV---ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQ 73
Query: 55 -------------------------------------------PKIKLKLTVQKEVLEGV 71
+IK+KLTV E++ G
Sbjct: 74 PPNEWIQAALESRELLAICLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEIIGGT 133
Query: 72 IVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDA 115
+++Q VV +N C + D W VQ+ +LI KH A
Sbjct: 134 MLQQVFVVEFTVQNQMCNDC---HRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKHKA 190
Query: 116 PARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT 175
IK G++FF++ +HA + V+F+ +VP + K+L+S S N KY
Sbjct: 191 HENTLGIKPEHGGLDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYN 250
Query: 176 CSVEISAISA-----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR 224
SVEI+ +S H LGNL P V+ +V++SI L+DP T + L + Y+R
Sbjct: 251 WSVEIAPVSKDSAVCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFR 310
Query: 225 SPFKALHTSRQLVEYIVLDVKVASTE------------------------------NDTI 254
+PF+A+ +QLVEY+V+D+ V + ND
Sbjct: 311 APFEAVCNPKQLVEYVVMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNP 370
Query: 255 LSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRK 314
+ TR+HLGHLL +GD +GY+ EAN ND+E + S PD I ++K Y + + R
Sbjct: 371 IHTRSHLGHLLKVGDSVMGYNTGEANINDLEFDKLSSDEIPDVILVRKHYDRQTRLSQR- 429
Query: 315 PNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL-----------MASVTDKE----- 358
K+K L E A E+ +Y EFL DL + T+K
Sbjct: 430 --VWKIKHLAAE-------ATDERSKYDYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEV 480
Query: 359 -----DVPSVPLDYLLAD--LDSSDKEEGDDS 383
DVP + L+ +L D L+ +D E G++
Sbjct: 481 QAAGGDVPQITLEEMLEDMTLECADDEMGEEG 512
>gi|194913036|ref|XP_001982614.1| GG12643 [Drosophila erecta]
gi|190648290|gb|EDV45583.1| GG12643 [Drosophila erecta]
Length = 521
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 217/509 (42%), Gaps = 148/509 (29%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------- 54
A + CC+CG+ + N +NMCVTCL++ VDITE++ K A + C
Sbjct: 20 ASNAVILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWI 79
Query: 55 -------------------------------------PKIKLKLTVQKEVLEGVIVEQSD 77
+IK+KLTV E+ G +++Q
Sbjct: 80 QASLESRELLAICLKKLKGLKDVKLVDAGFIWTEQHSKRIKVKLTVHGEITGGTVLQQVF 139
Query: 78 VV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV +N C + D W VQ+ +LI KH A
Sbjct: 140 VVEFTVQNQMCNDC---HRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLG 196
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK G++FF++ +HA + V+F+ +VP + K+L+S S N KY SVEI+
Sbjct: 197 IKPEHGGLDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIA 256
Query: 182 AISA-----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+S H LGNL P V+ +V++SI L+DP T + L + Y+R+PF+A+
Sbjct: 257 PVSKDSAVCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAI 316
Query: 231 HTSRQLVEYIVLDVKVASTE------------------------------NDTILSTRTH 260
+QLVEY+V+D+ V + ND + TR+H
Sbjct: 317 CNPKQLVEYVVMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNPIHTRSH 376
Query: 261 LGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKL 320
LGHLL +GD +GY+ EAN ND+E + S PD I ++K Y + + R K+
Sbjct: 377 LGHLLKVGDSVMGYNTGEANINDLEFDKLSSDEIPDVILVRKHYDRQTRLSQR---VWKI 433
Query: 321 KPLEMEVDGSKCGADREKVNNEYEEFLRDL-----------MASVTDKE----------D 359
K L E A E+ +Y EFL DL + T+K D
Sbjct: 434 KHLAAE-------ATDERSKYDYHEFLDDLEENEDIRGQVNIYRDTNKTIPIELQAAGGD 486
Query: 360 VPSVPLDYLLADL------DSSDKEEGDD 382
VP + L+ +L D+ D +E GDD
Sbjct: 487 VPQITLEEMLEDMTLECADDEMGEEGGDD 515
>gi|391344979|ref|XP_003746771.1| PREDICTED: 60S ribosomal export protein NMD3 [Metaseiulus
occidentalis]
Length = 507
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 140/500 (28%), Positives = 215/500 (43%), Gaps = 146/500 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CGI + N +NMCV CL EVDITES+ K + C
Sbjct: 15 ILCCRCGIPIAPNPANMCVDCLSREVDITESIPKQGVLQFCKGCERYLQPPAQWVVASLE 74
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMSR 82
++K+KLT+QKEV+ G I+EQ+ +V
Sbjct: 75 SRELLAICLKRIKGLNKVRLIDAGFIWTEPHSKRVKVKLTIQKEVMGGAIIEQAFIVEF- 133
Query: 83 NITCVNLVPGFM------QTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
V G M + D W A VQ +LI K+DA A I
Sbjct: 134 ------TVNGLMCDQCHRREAKDFWRAVVQCRQKVDHKKTLFYMEQLILKYDAHKDAINI 187
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
K + GI+FFF+ + A K V+F +VP +S +QL+S S N K T SVEI+
Sbjct: 188 KMVHEGIDFFFTKKDEARKLVQFFQTMVPIKSVESQQLISHDIHSNNFNYKTTFSVEIAP 247
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
+ A +LG++G IC +VT S+ ++DP TL+ + + YW++PF+ L
Sbjct: 248 VCKGDVVCLPTVLARHLGSIGQICICLRVTASVHVIDPATLQLAEIPSHLYWKTPFRGLF 307
Query: 232 TSRQLVEYIVLDVK---------------------------VASTE---NDTILSTRTHL 261
+ LVEYIV++++ + ++E ++ + +THL
Sbjct: 308 APKHLVEYIVMEIERIGESQMVTFAGQGKLSDRHVLANVFVIRASELGTHENYIHCKTHL 367
Query: 262 GHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLK 321
GH L GD +G+DL AN ND L S P+ + I+K + K R R+ +LK
Sbjct: 368 GHYLREGDSVLGFDLANANLNDPNLNKLPSDKVPEVVLIRKYWGSKADRAQRR--RWRLK 425
Query: 322 PLEMEVDGSKCGADREKVNNEYEEFLRDL------------------MASVTDKEDVPSV 363
+ +++D D V ++ EF DL +A ++ D P +
Sbjct: 426 RMNLDLD------DSSSVGRDFNEFCEDLEEDPALRQNVNIYKDSEKIAVESEAGDAPHI 479
Query: 364 PLDYLLADLDSSDKEEGDDS 383
L +L D+ + D E DD+
Sbjct: 480 SLQEMLDDM-TLDDEAMDDA 498
>gi|321473431|gb|EFX84398.1| hypothetical protein DAPPUDRAFT_194355 [Daphnia pulex]
Length = 509
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 127/443 (28%), Positives = 192/443 (43%), Gaps = 117/443 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG + N +NMCV CL+++VDI+E + K A I C
Sbjct: 17 ILCCQCGTPIEPNPANMCVACLRTQVDISEGIPKQAVIYFCKGCERYLQPPEQWIKCSLE 76
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--M 80
+IK+KLT+Q EVL G +++Q +V +
Sbjct: 77 SRELLGLCLAKLKGLNRVRLIDAGFVWTEPHSKRIKVKLTIQAEVLGGAVLQQVFIVDFV 136
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
C + D W A VQ+ +LI KH A IK
Sbjct: 137 VNGQFCEDC---HRVEAKDFWKANVQVRQKTDHKKTFYYLEQLILKHKAHESTLGIKPTH 193
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
GI+FF++ A K ++F+ VVP + + K ++S+ S CK+T SVEI +
Sbjct: 194 EGIDFFYANEGQAKKMLDFLTSVVPCRYQVSKTVISQDIHSNTYNCKFTYSVEIVPVCKD 253
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
AH LG +G + +V+++I L+DPF+ + ++++ YWR+PF AL ++Q
Sbjct: 254 CVVCLPAKLAHQLGGIGQICVVQRVSSTIHLIDPFSGQIAEVNSNTYWRTPFNALSGTKQ 313
Query: 236 LVEYIVLDVKVASTENDTILS----------------------------TRTHLGHLLIL 267
L EY+V+D++V + TRTHLGHLL
Sbjct: 314 LAEYVVMDIEVIRDHEKRTFAGQGAMSYKHVLADVYVCRPNEMGTNEIHTRTHLGHLLKP 373
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +GYDL N ND + PD + +KK Y +K+ R R+ K K ++
Sbjct: 374 GDIVMGYDLANCNVNDDNFDKMNRENMPDVVLVKKMYADKSVRNRRR----KFKLRHLDA 429
Query: 328 DGSKCGADREKVNNEYEEFLRDL 350
D G D VN +Y +FL DL
Sbjct: 430 D----GMDVTSVNRDYTDFLEDL 448
>gi|443897615|dbj|GAC74955.1| NMD protein affecting ribosome stability and mRNA decay [Pseudozyma
antarctica T-34]
Length = 548
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 200/467 (42%), Gaps = 135/467 (28%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------- 54
A + V C CG + N +N+C++CL++ VDITES+ K A + C
Sbjct: 7 AAQHMVLCADCGTPITPNNANLCLSCLRNSVDITESVPKQATVNFCRNCERYLNPPNSWV 66
Query: 55 -------------------------------------PKIKLKLTVQKEVLEGVIVEQSD 77
++++KLTVQKEV I++Q
Sbjct: 67 PARLESRELLAICLKKLKGLNKVRLIDAGFIWTEPHSKRLRVKLTVQKEVFTSTILQQ-- 124
Query: 78 VVMSRNITCVNLVPGFMQ-------TGPDHWDAAVQL--------------ELIQKHDAP 116
I V V + Q + W A VQ+ +LI KH+A
Sbjct: 125 ------IFEVEFVVQYGQCPDCTRLAAKNTWRAMVQVRQKVQHKRTFLYLEQLILKHNAH 178
Query: 117 ARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTC 176
I + G++FF++ RSHA+K VEF+ VVP ++ +Q++S + K+T
Sbjct: 179 QNTVSINEKKDGLDFFYTQRSHAIKMVEFLNSVVPIKTTKSEQVISMDVHTSTTNYKFTY 238
Query: 177 SVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS 225
SVEI+ + A LGN+G V+C KVTNS+ +DP +L+ + A++YWR
Sbjct: 239 SVEIAPVCKDDLVCMPPRMAKQLGNIGQLVLCNKVTNSLRFIDPISLQIAEVPAEKYWRD 298
Query: 226 PFKALHTSRQLVEYIVLDVK-----------------------------VASTENDTILS 256
P AL T +++E++VLD++ + E D +
Sbjct: 299 PLPALATIPEMIEFLVLDIEPTGRYATNSHGVQNRRLEEADAQVSPLNAASFGEADAVYH 358
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
TRTHLG +L GD +GY L AN N E + + PD + +KKSY E+ +R K
Sbjct: 359 TRTHLGAILQPGDTVMGYHLRVANFNSAEWDTLPADRLPDVVLVKKSYPERKKRS--KNR 416
Query: 317 PPKLKPLEMEVDGSKCGA-------------DREKVNNEYEEFLRDL 350
KLK + E + D ++V +YE FLR+L
Sbjct: 417 MWKLKSMAKEAEDPATEGAVGRGAVGRRGGLDSQRVERDYELFLREL 463
>gi|158294075|ref|XP_315383.4| AGAP005375-PA [Anopheles gambiae str. PEST]
gi|157015396|gb|EAA11292.5| AGAP005375-PA [Anopheles gambiae str. PEST]
Length = 510
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 148/511 (28%), Positives = 225/511 (44%), Gaps = 144/511 (28%)
Query: 4 AAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC--------- 54
++G AV K + CC+CG+ + NASNMCV CL+S VDITE++ K A I C
Sbjct: 13 SSGSGAVNK-ILCCECGVPIEPNASNMCVPCLRSHVDITENIPKQAVIFFCRNCERYLNP 71
Query: 55 ------------------------------------------PKIKLKLTVQKEVLEGVI 72
+IK+KLTV EV+ V+
Sbjct: 72 PNEWVQCTLESKELLSLCLKRLQGLRQVKLVDAGFVWTEPHSKRIKVKLTVHGEVMSDVV 131
Query: 73 VEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAP 116
++Q VV N C + D W VQ+ ++I KH A
Sbjct: 132 LQQVFVVEFTVNNQMCDDC---HRTEAKDFWRCMVQVRQKAVNRKTLFYLEQMILKHKAH 188
Query: 117 ARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTC 176
IK G++FF++ +HA K V+F+ V+P + + K+L+S S + KY+
Sbjct: 189 ENTLGIKPNTGGLDFFYATDAHARKMVDFMQAVLPVKVTNSKKLISHDIHSNSYNYKYSY 248
Query: 177 SVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS 225
++++ +S LG++ P + +KV NSI L+DP T + + +W+S
Sbjct: 249 AIDVVPVSKGSLVCLSKRLTQQLGHIAPVCLVSKVANSIHLIDPQTAQMAEVQNMAFWKS 308
Query: 226 PFKALHTSRQLVEYIVLDVK---------------------------VASTE---NDTIL 255
PF+A+ +Q+VE++V+DV+ V S+E N+ +
Sbjct: 309 PFEAICNPKQMVEFVVMDVEIIRENQRKTFPGQGPVSHRHTLADVWVVKSSELGINENTI 368
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
++HLG+LL GDY +GYDL EAN N+ + E + PD + IKKSY + +++ R
Sbjct: 369 HVKSHLGNLLKPGDYVLGYDLREANVNNADYEKLNADTVPDVLLIKKSYDKTVRKQSRN- 427
Query: 316 NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL--------------------MASVT 355
KLK L E+ + NEY EFL DL + T
Sbjct: 428 --WKLKHLNEEI------VVDTDIENEYNEFLEDLEEDPELRQNVNIFKDKNKQQIPVDT 479
Query: 356 DKEDVPSVP---LDYLLADLDSSDKEEGDDS 383
+ D PSVP L+ +L DL D+E GD S
Sbjct: 480 NDMDDPSVPRITLEEMLDDLVLEDEEMGDAS 510
>gi|125982920|ref|XP_001355225.1| GA17465 [Drosophila pseudoobscura pseudoobscura]
gi|195168912|ref|XP_002025274.1| GL13399 [Drosophila persimilis]
gi|54643539|gb|EAL32282.1| GA17465 [Drosophila pseudoobscura pseudoobscura]
gi|194108730|gb|EDW30773.1| GL13399 [Drosophila persimilis]
Length = 523
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 143/499 (28%), Positives = 221/499 (44%), Gaps = 144/499 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC+C + + N +NMCVTCL++ VDITE++ K A + C
Sbjct: 27 ILCCECAVPIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPTEWIQASLE 86
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--M 80
+IK+KLTV E++ G +++Q VV
Sbjct: 87 SRELLALCLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEIVGGTVLQQVFVVEFT 146
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+N C + D W VQ+ +LI KH A IK
Sbjct: 147 VQNQMCTDC---HRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKHKAHEHTLGIKPEH 203
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA- 185
G++F+++ +HA + V+F+ +VP + K+L+S S N KY+ SVE++ +S
Sbjct: 204 GGLDFYYANENHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYSWSVELAPVSKD 263
Query: 186 ----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
H LGNL P + +V++SI L+DP T + L + Y+R+PF+A+ +Q
Sbjct: 264 SAVCLSKKLRHQLGNLSPICLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAVCNPKQ 323
Query: 236 LVEYIVLDVKVA---------------------------STE---NDTILSTRTHLGHLL 265
LVEY+V+D++V S+E ND + TR+HLGHLL
Sbjct: 324 LVEYVVMDIEVIMEKDRKTYPGQGQLSFKHALCDIWVVRSSELGINDNPIHTRSHLGHLL 383
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GD +GY+ EAN ND E E S + PD + ++K Y + + R K+K L
Sbjct: 384 KVGDSVMGYNTGEANINDPEFEKLASDLVPDVVLVRKHYDRQARLNQRV---WKIKHLAA 440
Query: 326 EVDGSKCGADREKVNNEYEEFLRDLMASV-----------TDKE----------DVPSVP 364
E A E+ ++Y EFL DL +V T+K DVP +
Sbjct: 441 E-------ATDERSKHDYHEFLDDLEENVDMRGQVNIYRDTNKTLPIEVQGATGDVPQIT 493
Query: 365 LDYLLAD--LDSSDKEEGD 381
L+ +L D L+ +D E G+
Sbjct: 494 LEEMLEDMTLECADDEMGE 512
>gi|402222141|gb|EJU02208.1| NMD3-domain-containing protein, partial [Dacryopinax sp. DJM-731
SS1]
Length = 521
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/462 (29%), Positives = 197/462 (42%), Gaps = 133/462 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG + N++N+C+ CL++ VDITE + K + + C
Sbjct: 12 VLCADCGTPIEPNSANLCIACLRNTVDITEGIPKQSTVNFCRNCDRWLSPPATWTIAEPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQ-----SD 77
+I++KLT+QKEV IV+Q
Sbjct: 72 SRELLAICLKKLKGLNKIRLIDAGFIWTEPHSKRIRVKLTIQKEVFTSTIVQQIFEVEYV 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
VV + C L + W A VQ+ +LI KH+A IK
Sbjct: 132 VVHGQCPDCTKLA------AKNTWKAMVQVRQKVNHKRTFLYLEQLILKHNAHRNTISIK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++FF++ RSHA+K VEF+ VVP + + +QL+S S K+T SVEI I
Sbjct: 186 EAKDGLDFFYAQRSHAIKMVEFLTAVVPVKMKSSEQLLSTDIHSGTANYKFTYSVEIIPI 245
Query: 184 -----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +L N+ P IC++V NSI LDP TL+ + + YWR+PF AL T
Sbjct: 246 CKDDLVVIPPKQARSLSNIQPLTICSRVGNSIHFLDPQTLQVADVTSPVYWRTPFDALAT 305
Query: 233 SRQLVEYIVLDVK------------------------------VASTEN-DTILSTRTHL 261
+E++VLD++ V E D+I TRTHL
Sbjct: 306 VSDTIEFLVLDIEPSGPTRGRYVLADAQVTPVNSSLGMQASSFVGDGEGQDSIYHTRTHL 365
Query: 262 GHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLK 321
G +L GD +GY L AN N+ + PD + ++K+Y N+RK + +LK
Sbjct: 366 GAILQPGDTVLGYFLTRANYNNATFDTLDPSQVPDVVLVRKTY--PNRRKKTRTRNWRLK 423
Query: 322 PLEMEVD-------------GSKCGADREKVNNEYEEFLRDL 350
+ E + G G D++KV +YE FLR+L
Sbjct: 424 SIAKEAEDPAATGTHGRGALGRMGGVDQQKVERDYELFLREL 465
>gi|118095345|ref|XP_422813.2| PREDICTED: 60S ribosomal export protein NMD3 [Gallus gallus]
Length = 504
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/505 (27%), Positives = 219/505 (43%), Gaps = 136/505 (26%)
Query: 4 AAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------- 55
AA + ++ CC CG+ + N +NMCV CL++ VDITE + K +++ C
Sbjct: 5 AAPAAPTQGSILCCHCGVPIPPNPANMCVGCLRARVDITEGIPKQLSVSFCKQCERYLQP 64
Query: 56 --------------------------------------------KIKLKLTVQKEVLEGV 71
++KLKLTVQKEV+ G
Sbjct: 65 PGTWIQCALESRELLALCLKKIKASLSKVRLIDAGFIWTEPHSKRLKLKLTVQKEVINGA 124
Query: 72 IVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDA 115
+++Q VV + ++ C + D W A VQ+ +LI KH
Sbjct: 125 VLQQVFVVEYLIQSQMCEDC---HRIEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKHRL 181
Query: 116 PARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT 175
+IK++ G++F++S + HA K V+F+ VP++S+ ++L S S K T
Sbjct: 182 HQNTLRIKEIHDGLDFYYSSKQHAQKMVDFLQCTVPSRSKSSQRLTSHDVHSNVYNYKST 241
Query: 176 CSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR 224
SVEI + A +LGN+ +C +VT+++ L+DP TL+ +D + YWR
Sbjct: 242 FSVEIVPVCKDNVVCLSPKLAQSLGNMSQICVCIRVTSTVHLIDPSTLQIAEIDGNTYWR 301
Query: 225 SPFKALHTSRQLVEYIVLDV---------------------------KVASTENDTILST 257
PF +L +QL E+IV+D+ K + D
Sbjct: 302 HPFNSLFNPKQLEEFIVMDINRVQEKKKPAGAGARSNKHTLAEAWVKKTSELNTDHQYFC 361
Query: 258 RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
THLGH+L GD +G+DL N ND + PD + IKKSY ++ +R+HR+
Sbjct: 362 CTHLGHILNPGDLVLGFDLANCNLNDEFVNKMSPHNIPDVVLIKKSY-DRAKRQHRR--N 418
Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKE 358
KLK LE + +G+ +R +Y++FL DL + S TD +
Sbjct: 419 WKLKELERDREGTDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRNADIPVESDTDDD 473
Query: 359 DVPSVPLDYLLADLDSSDKEEGDDS 383
P + L +L DL S+ G +
Sbjct: 474 GAPRISLAEMLEDLHISEDATGGEG 498
>gi|390598763|gb|EIN08160.1| NMD3-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 571
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/465 (29%), Positives = 198/465 (42%), Gaps = 133/465 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V C CG +V N++N+CV CL++ VDITE + K +++T C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNSVDITEGIPKQSSLTFCRNCERFSSPPNAWIIAQPE 71
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--M 80
++++ LT+QKEVL I+EQ + +
Sbjct: 72 SQELLALCLRRIKGLNKVRLTDAHFIWTEPHSRRLRVSLTIQKEVLTATILEQIFEIEYL 131
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+N C + + W A VQ+ +LI KH A +K+
Sbjct: 132 VQNAQCPDCA---RLAAKNTWKAVVQVRQKVPHKRTFLFLEQLILKHGAQKDTISVKETR 188
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++FF+S RSHA+K EF+ VVP +S+ +QL+S+ T S K+T SVEI+ +
Sbjct: 189 DGLDFFYSQRSHAIKMTEFLTSVVPVRSKSSEQLISKDTHSNTANYKFTYSVEIAPVCKD 248
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
A L N+ P V+CT+V NS+ L DP TL L A YWR+PF +L
Sbjct: 249 DLVCLPPKLARQLANISPLVLCTRVGNSLHLADPQTLAVSELAAPIYWRTPFDSLAGVTD 308
Query: 236 LVEYIVLDVKVAS----------------------------------------TENDTIL 255
LVE+ VLDV+ + + I
Sbjct: 309 LVEFTVLDVEPSGPTRGKWVLADAQVALAGAFRSHAEDADEDAMALDDDHELVAGQNQIF 368
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
TRTHLG +L GD A+GY L AN N + + PD + +KK+Y N+RK K
Sbjct: 369 HTRTHLGAILQPGDTALGYWLSHANFNSDDFSALPADRIPDVVLVKKAY--PNRRKKSKA 426
Query: 316 NPPKLKPLEMEV----------DGSKCGADREKVNNEYEEFLRDL 350
L+ + E G G D+ KV+ +YE FLR+L
Sbjct: 427 RTWTLRSMAKEAADEAQDGRGVVGRLGGRDQRKVDEDYELFLREL 471
>gi|195347866|ref|XP_002040472.1| GM18910 [Drosophila sechellia]
gi|194121900|gb|EDW43943.1| GM18910 [Drosophila sechellia]
Length = 517
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 142/504 (28%), Positives = 214/504 (42%), Gaps = 144/504 (28%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------- 54
A + CC+CG+ + N +NMCVTCL++ VDITE++ K A + C
Sbjct: 20 ASNAIILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWI 79
Query: 55 -------------------------------------PKIKLKLTVQKEVLEGVIVEQSD 77
+IK+KLTV E+ G +++Q
Sbjct: 80 QAALESRELLAICLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEITGGTVLQQVF 139
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
VV T N D W VQ+ +LI KH A IK
Sbjct: 140 VV---EFTMCN--DCHRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIK 194
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
G++FF++ +HA + V+F+ +VP + K+L+S S N KY SVEI+ +
Sbjct: 195 PEHGGLDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIAPV 254
Query: 184 SA-----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
S H LGNL P V+ +V++SI L+DP T + L + Y+R+PF+A+
Sbjct: 255 SKDSAVCLSKKLRHQLGNLSPVVLVNRVSSSIHLIDPLTAQIAELTSQVYFRTPFEAICN 314
Query: 233 SRQLVEYIVLDVKVASTE------------------------------NDTILSTRTHLG 262
+QLVEY+V+D+ V + ND + TR+HLG
Sbjct: 315 PKQLVEYVVMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNPIHTRSHLG 374
Query: 263 HLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
HLL +GD +GY+ EAN ND+E + + PD I ++K Y + + R K+K
Sbjct: 375 HLLKVGDSVMGYNTGEANINDLEFDKLSTDEIPDVILVRKHYDRQTRLSQR---VWKIKH 431
Query: 323 LEMEVDGSKCGADREKVNNEYEEFLRDL---------------------MASVTDKEDVP 361
L E A E+ +Y EFL DL + + DVP
Sbjct: 432 LAAE-------ATDERSKYDYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEAQAAGGDVP 484
Query: 362 SVPLDYLLAD--LDSSDKEEGDDS 383
+ L+ +L D L+ +D E G++
Sbjct: 485 QITLEEMLEDMTLECADDEMGEEG 508
>gi|294881745|ref|XP_002769476.1| hypothetical protein, conserved [Perkinsus marinus ATCC 50983]
gi|239872935|gb|EER02194.1| hypothetical protein, conserved [Perkinsus marinus ATCC 50983]
Length = 533
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/452 (29%), Positives = 196/452 (43%), Gaps = 134/452 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V CC CG +M N SNMCV C+K EVDITE + K A + C
Sbjct: 27 VLCCVCGASMAPNQSNMCVNCMKGEVDITEGISKQAVVNYCRECNRYQRPPWVPCEPESR 86
Query: 55 ------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSRNI 84
++K+KLTVQKEV+ G I++QS +V
Sbjct: 87 ELLGICLKKIKGLNKVKLVDANFIWQAPTSKRMKVKLTVQKEVMNGAIMQQSMIV----- 141
Query: 85 TCVNLVPGFMQTG-------PDHWDAAVQL--------------ELIQKHDAPARATKIK 123
+ + + Q P W+A+VQ+ +LI KHDA + IK
Sbjct: 142 ---DFIVAWQQCDDCKRTYTPHTWNASVQVRQKTDHKRTFYYLEQLILKHDAHEKVVGIK 198
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++F F RSHA KF EFV VP++ + K L+S + + KYT +++ +
Sbjct: 199 RTPDGLDFHFGHRSHAQKFSEFVLSQVPSRVKQSKHLISHDSHNTTYNYKYTTLIDMCPV 258
Query: 184 SA-----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
+ LG + P + TKV++ I L+DP T R L +YW++PF+ L T
Sbjct: 259 CKDDVVFLPKALKNKLGGVNPIQVVTKVSSQIRLVDPLTGRVSDLAGIEYWKNPFEPLLT 318
Query: 233 SRQLVEYIVL--------------------------DVKVASTEND--------TILSTR 258
R LVE+ VL D+++ TEN I++ R
Sbjct: 319 RRHLVEFTVLNVEEDTSRARAATTFNRRGQKAYTMVDLELMRTENSGEAAAGDPEIITVR 378
Query: 259 THLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPP 318
+HLG +L GD GYDL N + I+ E + D I +KK+Y QRK P
Sbjct: 379 SHLGGVLQPGDLCAGYDLRTVNVSGIDEEMLEK-TNLDVIIVKKTYTRHRQRKR----PW 433
Query: 319 KLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
L+ LE E G E + +YE+F+RD+
Sbjct: 434 MLRRLEREDAGG------ESNDGDYEQFMRDI 459
>gi|405119247|gb|AFR94020.1| RNA binding protein [Cryptococcus neoformans var. grubii H99]
Length = 565
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 202/459 (44%), Gaps = 130/459 (28%)
Query: 14 VSCCKCGITMVS-NASNMCVTCLKSEVDITESLQKHAN-----------------ITPCP 55
+ C CG + S N + +CV CL++ VDITE + K A +T P
Sbjct: 17 ILCADCGTVISSANGAGLCVGCLRNTVDITEGIPKEATLNFCRGCERFLSPPNTWVTVQP 76
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSD--- 77
+IKLK+T+QKEVL +++Q+
Sbjct: 77 ESRELLAICLKKIARPLMKVRLIDASFIWTEPHSRRIKLKITIQKEVLAHTVLQQTFELT 136
Query: 78 --VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
V + +C L + W A+VQ+ +LI KH+A
Sbjct: 137 LVVHTGQCPSCTRLA------AKNTWKASVQVRQKVTHKRTFLWLEQLILKHNAHKDTIN 190
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
I + G++F +S R++A+K EF+ VVP + + +QL+S T S K+T SVEI
Sbjct: 191 IAEKRDGLDFLYSERNNAIKMCEFLAGVVPVRVKSSEQLISSDTHSNTSNYKFTYSVEIV 250
Query: 182 AISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+ +L GN+ P IC++V N+I LLDP TL+ + A YWR PF +L
Sbjct: 251 PVCKDDLVCLPKSLARAWGNISPLTICSRVGNTIHLLDPMTLQQTDVTAPVYWRQPFDSL 310
Query: 231 HTSRQLVEYIVLDV------------------KVASTENDT---------ILSTRTHLGH 263
T LVE+IVLD+ + +ST N+T I TRTHLG
Sbjct: 311 TTVADLVEFIVLDIEPSGPVRGKYVLADAQVTRSSSTGNNTDDDGMGDDGIYHTRTHLGG 370
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
+L GD +GY L AN N E +S PD I +KK+Y N+RK KP KL+ +
Sbjct: 371 ILQPGDTVLGYHLTNANFNSDSFEALESGRIPDVILVKKTY--PNRRKKSKPRHWKLRSI 428
Query: 324 EMEVDGSKCGA------------DREKVNNEYEEFLRDL 350
E + + G D++ V +YE FLRDL
Sbjct: 429 AKEAEDVQDGTVGRGALGRRGGVDQKNVERDYELFLRDL 467
>gi|388857502|emb|CCF48858.1| probable NMD3-nonsense-mediated mRNA decay protein [Ustilago
hordei]
Length = 551
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/467 (28%), Positives = 199/467 (42%), Gaps = 135/467 (28%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------- 54
A + V C CG + N +N+C++CL++ VDITES+ K A + C
Sbjct: 7 AAQHMVLCADCGTPIAPNNANLCLSCLRNSVDITESVPKQATVNFCRNCERYLNPPNSWV 66
Query: 55 -------------------------------------PKIKLKLTVQKEVLEGVIVEQSD 77
++++KLTVQKEV I++Q
Sbjct: 67 PARLESRELLAICLKKLKGLNKVRLIDAGFIWTEPHSKRLRVKLTVQKEVFTSTILQQ-- 124
Query: 78 VVMSRNITCVNLVPGFMQ-------TGPDHWDAAVQL--------------ELIQKHDAP 116
I V V + Q + W A VQ+ +LI KH+A
Sbjct: 125 ------IFEVEFVVQYGQCPDCTRLAAKNTWRAMVQVRQKVQHKRTFLYLEQLILKHNAH 178
Query: 117 ARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTC 176
I + G++FF+S RSHA+K VEF+ VVP ++ +Q++S + K+T
Sbjct: 179 QNTVSINEKKDGLDFFYSQRSHAIKMVEFLNSVVPIRTTKSEQVISMDVHTSTTNYKFTY 238
Query: 177 SVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS 225
SVEI+ I A LGN+G V+C KV+NS+ LDP +L+ + A++YWR
Sbjct: 239 SVEIAPICKDDLVCLPPKMAKQLGNIGQLVLCHKVSNSLKFLDPISLQIADVPAEKYWRD 298
Query: 226 PFKALHTSRQLVEYIVLDVK-----------------------------VASTENDTILS 256
P AL T ++VE+++LD++ + E D +
Sbjct: 299 PQPALATIPEMVEFLILDIEPTGRYATNSHGVENRRLEEADAQVSPLNATSFGEADAVYH 358
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
TRTHLG +L GD +GY L AN N E + PD + +KKSY E+ +R K
Sbjct: 359 TRTHLGAILQPGDTVMGYHLRVANFNSATWETIPADRMPDVVLVKKSYPERKKRS--KNR 416
Query: 317 PPKLKPLEMEVDGSKCGA-------------DREKVNNEYEEFLRDL 350
KLK + E + D ++V +YE FLR+L
Sbjct: 417 TWKLKSIAKEAEDPSAEGAVGRGAVGRRGGLDSQRVERDYELFLREL 463
>gi|444318629|ref|XP_004179972.1| hypothetical protein TBLA_0C06600 [Tetrapisispora blattae CBS 6284]
gi|387513013|emb|CCH60453.1| hypothetical protein TBLA_0C06600 [Tetrapisispora blattae CBS 6284]
Length = 525
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 139/506 (27%), Positives = 223/506 (44%), Gaps = 136/506 (26%)
Query: 13 TVSCCKCGITMVSNAS-NMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG + +A MC C+K VDITE + + AN++ C
Sbjct: 23 TVLCCNCGTPIDGSAGLVMCYDCIKMTVDITEGIPREANVSFCRNCERFLQPPGQWIRAE 82
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 83 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIIQQTFEVE 142
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 143 YVVVAMQCADCARSYT---TNTWRATVQIRQKVHHKRTFLYLEQLILKHNAHVDTISITE 199
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK V+F+ VVP +++ ++L+S+ + + K++ S+EI+ I
Sbjct: 200 TKDGLDFFYAQKNHAVKMVDFLNSVVPIKAKKSEELISQDVHTGSSTYKFSYSIEIAPIC 259
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +LGN+ FVIC+KV+N+I LDP TL+ L A YWRSPF++L
Sbjct: 260 KDDLVVLPKKLAKSLGNISQFVICSKVSNTIQFLDPNTLQTGDLSAAVYWRSPFQSLADV 319
Query: 234 RQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHLLILGDYAIGY 274
QL+E+IVLDV+ VA + ND + RTHLG ++ GD +GY
Sbjct: 320 SQLIEFIVLDVEPTGAVKGRNVLADVTVARSCDLGVNDQVYYIRTHLGGIIHAGDTVMGY 379
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGA 334
+ +N N +N K PD + +KK Y+ K RK+R ++ E++ S+ +
Sbjct: 380 FIANSNYNSELFDNLKYDYVPDVVLVKKLYQRKT-RKNRNWKLKRMAKEHKEIEASQDYS 438
Query: 335 DR------EKVNNEYEEFLRDLMASVTDKE----------------------------DV 360
R E+ +YE FL++L ++ D
Sbjct: 439 SRVQKQDMERAERDYELFLQELEEDAELRQSINLYKSNKPAANQGTETAQNEQDEQDADA 498
Query: 361 PSVPLDYLLADLDSSDKEEGDDSMIE 386
P + +D LL +LD E+G D +E
Sbjct: 499 PEINIDELLDELDDMTLEDGPDVEME 524
>gi|443730657|gb|ELU16081.1| hypothetical protein CAPTEDRAFT_174567 [Capitella teleta]
Length = 510
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/506 (27%), Positives = 224/506 (44%), Gaps = 143/506 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC+CG + N +NMCV CL+++VDI+E + K A + C
Sbjct: 15 ILCCQCGTQIEPNPANMCVACLRAQVDISEGIPKQAVLHFCRQCERYLQPPSCWLKAALE 74
Query: 55 ---------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+K+T+QKEV+ G +++Q +V
Sbjct: 75 SRELLAVCLKKVKGINKEVRLVDAGFIWTEPHSKRLKVKMTIQKEVMNGAVLQQVFIVEF 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ N C + D+W A VQ+ +L+ KH A A +T IK++
Sbjct: 135 VVHNQMCEDC---HRVEAKDYWRACVQIRQKTTHKKTLFYLEQLMLKHGAHANSTSIKQV 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++ + A + V+F+ VVP +S K+L+S S K + S EI +
Sbjct: 192 HDGLDFYYGAQQDARRLVDFLSSVVPCRSSFAKELISHDIHSNVYNYKISFSAEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGNLG + +VT ++ L+DP T + ++ ++YWR+PF +L R
Sbjct: 252 DNVVCVGSKLAQSLGNLGQICVVLRVTQAVHLIDPNTCQIAEVNGEKYWRNPFLSLCDPR 311
Query: 235 QLVEYIVLDVK------------------------VASTENDTILST------RTHLGHL 264
QLVEY V+D++ V +N + +T R+HLGHL
Sbjct: 312 QLVEYTVMDIEPIMDKDRKHVAGGGAVSHKHILADVYVIKNSELGTTAEQVHCRSHLGHL 371
Query: 265 LILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE 324
L GD +G+D+ AN N+ LE KS PD + +KK Y + +R R+ KLK ++
Sbjct: 372 LQPGDTVLGFDVRNANHNNEHLEKMKSERIPDVVLVKKLYSDSTKRARRR--KWKLKHID 429
Query: 325 MEVDGSKCGADREKVNNEYEEFLRDL---------------MASV-------TDKEDVPS 362
+ D + VN +Y +FL DL A + +D ED P
Sbjct: 430 AAHE-----MDTDSVNRDYNDFLEDLEEDPASRQQINIYKDEAKIAVEPEYESDNEDAPQ 484
Query: 363 VPLDYLLADLDSSDKEEGDD--SMIE 386
+ L ++ DL S+ G++ +M+E
Sbjct: 485 ISLMEMMEDLKISEDATGEEGAAMLE 510
>gi|336375778|gb|EGO04114.1| hypothetical protein SERLA73DRAFT_102468 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388897|gb|EGO30041.1| hypothetical protein SERLADRAFT_433969 [Serpula lacrymans var.
lacrymans S7.9]
Length = 558
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 140/466 (30%), Positives = 200/466 (42%), Gaps = 137/466 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+CV CL++ VDITE + K ++++ C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQSSVSFCRNCERFLSPPQSWSLARPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSD----- 77
++++ LTVQKEVL I+EQ
Sbjct: 72 SQELLAICLKKLKGLNKVRLTEAHFIWTEPHSKRLRVSLTVQKEVLTSTILEQVFEIEYL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C L + W A VQ+ +LI KH A +K
Sbjct: 132 VQHGQCPDCAKLA------AKNTWKALVQVRQKVPHKRTFLFLEQLIIKHGAQKDTISVK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++FF+S R+HA+K VEF+ VVP +S+ +QL+S T S K+T SVEI +
Sbjct: 186 EVKDGLDFFYSQRNHAIKMVEFLAGVVPVRSKGSEQLLSTDTHSGTASYKFTYSVEIVPV 245
Query: 184 -----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A L N+ P ICT+V +S LLD TL+ C + A YWR PF +L
Sbjct: 246 CKDDLVCIPLKQARQLSNISPLTICTRVGSSFQLLDVSTLQTCEISAQVYWRVPFDSLAQ 305
Query: 233 SRQLVEYIVLDVKVAST--------------------------------EN----DTILS 256
LVE+ +LD++ + + EN + I
Sbjct: 306 VTDLVEFTILDIEPSGSVRGKWVLADAQVAMSGAFRSSGTHADDDGMDYENSAISNQIYH 365
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
TRTHLG +L GD A+GY L AN N + + S PD I +KK+Y N+RK K
Sbjct: 366 TRTHLGAILQPGDTALGYHLSNANFNSDDFSSLPSSRIPDIILVKKAY--PNRRKKSKAR 423
Query: 317 PPKLKPLEMEV------------DGSKCGADREKVNNEYEEFLRDL 350
KL+ + E G G D +KV+ +YE FLRDL
Sbjct: 424 NWKLRSIAKEAGEEGETGGGRGVVGRMGGRDNKKVDEDYELFLRDL 469
>gi|389748034|gb|EIM89212.1| NMD3-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 581
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 199/469 (42%), Gaps = 140/469 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+CV CL++ VDITE + K A+I+ C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQASISYCRNCERHLAPPAQWVIARPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQ-----SD 77
++++ LT+QKEVL I+EQ
Sbjct: 72 SQELLAICLKKLKGLSKVRLTEAHFIWTEPHSKRLRVSLTIQKEVLTNTILEQIFEIEYL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C L + W A VQ+ +LI KH A +K
Sbjct: 132 VQYGQCPDCTKLA------AKNTWKALVQVRQKVPHKRTFLYLEQLILKHGAQKDTISVK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++F++S RSHA+K VEF+G VVP +++ ++L+S T + K+T SVEI I
Sbjct: 186 EVKDGLDFYYSQRSHALKMVEFLGSVVPIRTKSSERLLSTDTHTSTANYKFTYSVEIVPI 245
Query: 184 -----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +GN+ P ICT+V NS+ ++DP TL+ + + YWR+PF +L
Sbjct: 246 CKDDLVCIPLKQARQMGNINPLTICTRVGNSLHVIDPNTLQSSEITSPVYWRTPFDSLAG 305
Query: 233 SRQLVEYIVLDVK---------------------------VASTEND------------T 253
+L E+ VLDV+ + E+D
Sbjct: 306 ISELKEFTVLDVEPMHGAGAVKGKWVLADAQVALSGAFKSTGTYEDDGMMDYETSASANQ 365
Query: 254 ILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHR 313
I TRTHLG +L GD +GY L N N E PD I +KK+Y N+RK
Sbjct: 366 IFHTRTHLGAILQPGDSVMGYFLSHTNFNSEEFTKLPQDRIPDIILVKKAY--PNRRKKT 423
Query: 314 KPNPPKLKPL------------EMEVDGSKCGADREKVNNEYEEFLRDL 350
K KL+ + V G G D++KV +YE FLRDL
Sbjct: 424 KTRNWKLRSIGKEAGEEGETGGGRGVIGRMGGRDQKKVEQDYELFLRDL 472
>gi|194768751|ref|XP_001966475.1| GF21978 [Drosophila ananassae]
gi|190617239|gb|EDV32763.1| GF21978 [Drosophila ananassae]
Length = 522
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 141/504 (27%), Positives = 214/504 (42%), Gaps = 144/504 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC+CG+ + SN +NMCVTCL++ VDITE++ K A + C
Sbjct: 26 ILCCECGVPIQSNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQASLE 85
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--M 80
+IK+KLTV E+ G +++Q VV
Sbjct: 86 SRELLAVCLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEITGGTVLQQVFVVEFT 145
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+N C + D W VQ+ +LI KH A IK
Sbjct: 146 VQNQMCNDC---HRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEH 202
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA- 185
G++FF++ +HA + ++F+ +VP + K+L+S S N KY S EI+ +S
Sbjct: 203 GGLDFFYANDNHARRMIDFLQTMVPGKVTTSKRLISHDIHSNNYNYKYNWSYEIAPVSKD 262
Query: 186 ----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
H LGNL P + +V++SI L+DP T + L + Y+R+PF+A+ +Q
Sbjct: 263 SAVCLSKKLRHQLGNLSPVCLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAICNPKQ 322
Query: 236 LVEYIVLDVKVASTE------------------------------NDTILSTRTHLGHLL 265
LVEY+V+D+ V + ND + TR+HLGHLL
Sbjct: 323 LVEYVVMDIDVILEKDRKTYPGQGQVSFKHALCDIWVLRASELGINDNPIHTRSHLGHLL 382
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GD +GY+ EAN ND E E PD I ++K Y + + R K+K L
Sbjct: 383 KVGDSVMGYNTGEANINDPEFEKLTPEQVPDVILVRKHYDRQTRLSQRL---WKIKHLAA 439
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL---------------------MASVTDKEDVPSVP 364
E A E+ ++Y EFL DL + DVP +
Sbjct: 440 E-------ATDERSKHDYHEFLDDLEDHEDLRGQINIYRDSNKTAPIDLQAGNSDVPQIT 492
Query: 365 LDYLLAD--LDSSDKEEGDDSMIE 386
L+ ++ D L+ +D E G+D+ E
Sbjct: 493 LEEMMEDMTLECADDEMGEDAGAE 516
>gi|321264003|ref|XP_003196719.1| nonsense-mediated mRNA decay protein 3; putative [Cryptococcus
gattii WM276]
gi|317463196|gb|ADV24932.1| Nonsense-mediated mRNA decay protein 3; putative [Cryptococcus
gattii WM276]
Length = 565
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 139/459 (30%), Positives = 201/459 (43%), Gaps = 130/459 (28%)
Query: 14 VSCCKCGITMVS-NASNMCVTCLKSEVDITESLQKHANITPC------------------ 54
+ C CG + S N + +CV CL++ VDITE + K A + C
Sbjct: 17 ILCADCGTVISSANGAGLCVGCLRNTVDITEGIPKEATLNFCRGCERFLSPPNTWVAVQP 76
Query: 55 ---------------PKIK-------------------LKLTVQKEVLEGVIVEQSD--- 77
P +K LK+T+QKEVL +++Q+
Sbjct: 77 ESRELLAICLKKIARPLMKVRLIDASFIWTEPHSRRIKLKITIQKEVLAHTVLQQTFELT 136
Query: 78 --VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
V + +C L + W A+VQ+ +LI KH+A
Sbjct: 137 LVVHTGQCPSCTRLA------AKNTWKASVQVRQKVTHKRTFLWLEQLILKHNAHKDTIN 190
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
I + G++FF++ R++A+K EF+ VVP + + +QL+S T S K+T SVEI
Sbjct: 191 IAEKRDGLDFFYTERNNAIKMCEFLAGVVPVRVKSSEQLISSDTHSNTSNYKFTYSVEIV 250
Query: 182 AISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+ +L GN+ P IC++V N+I LLDP TL+ + A YWR PF +L
Sbjct: 251 PVCKDDLVCLPKSLARAWGNISPLTICSRVGNTIHLLDPMTLQQTDVTAPVYWRQPFDSL 310
Query: 231 HTSRQLVEYIVLDV------------------KVASTENDT---------ILSTRTHLGH 263
T LVE+IVLDV + +ST N+T I TRTHLG
Sbjct: 311 TTVADLVEFIVLDVEPSGPVRGKYVLADAQVTRSSSTGNNTDDDGMGDDGIYHTRTHLGG 370
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
+L GD +GY L N N E +S PD I +KK+Y N+RK KP KL+ +
Sbjct: 371 ILQPGDTVLGYHLTNTNFNSDSFEALESGRIPDVILVKKTY--PNRRKKSKPRHWKLRSI 428
Query: 324 EMEVDGSKCGA------------DREKVNNEYEEFLRDL 350
E + + G D++ V +YE FLRDL
Sbjct: 429 AKEAEDVQDGTVGRGALGRRGGVDQKNVERDYELFLRDL 467
>gi|58260848|ref|XP_567834.1| RNA binding protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134117191|ref|XP_772822.1| 60S ribosomal export protein NMD3 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255440|gb|EAL18175.1| hypothetical protein CNBK1940 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229915|gb|AAW46317.1| RNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 564
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 139/459 (30%), Positives = 201/459 (43%), Gaps = 130/459 (28%)
Query: 14 VSCCKCGITMVS-NASNMCVTCLKSEVDITESLQKHANITPC------------------ 54
+ C CG + S N + +CV CL++ VDITE + K A + C
Sbjct: 17 ILCADCGTVISSANGAGLCVGCLRNTVDITEGIPKEATLNFCRGCEKFLSPPNTWIAVQP 76
Query: 55 ---------------PKIK-------------------LKLTVQKEVLEGVIVEQSD--- 77
P +K LK+T+QKEVL +++Q+
Sbjct: 77 ESRELLAICLKKIARPLMKVRLIDASFIWTEPHSRRIKLKITIQKEVLAHTVLQQTFELT 136
Query: 78 --VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
V + +C L + W A+VQ+ +LI KH+A
Sbjct: 137 LVVHTGQCPSCTRLA------AKNTWKASVQVRQKVTHKRTFLWLEQLILKHNAHKDTIN 190
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
I + G++FF+S R++A+K EF+ VVP + + +QL+S T S K+T SVEI
Sbjct: 191 IAEKRDGLDFFYSERNNAIKMCEFLAGVVPVRVKSSEQLISSDTHSNTSNYKFTYSVEIV 250
Query: 182 AISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+ +L GN+ P IC++V N+I LLDP TL+ + A YWR PF +L
Sbjct: 251 PVCKDDLVCLPKSLARAWGNISPLTICSRVGNTIHLLDPMTLQQTDVAAPVYWRQPFDSL 310
Query: 231 HTSRQLVEYIVLDV------------------KVASTENDT---------ILSTRTHLGH 263
T LVE+IVLDV + +ST N+ I TRTHLG
Sbjct: 311 TTVADLVEFIVLDVEPSGPVRGKYVLADAQVTRSSSTGNNADDDGMGDDGIYHTRTHLGG 370
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
+L GD +GY L AN N E +S PD I +KK+Y N+RK +P KL+ +
Sbjct: 371 ILQPGDTVLGYHLTNANFNSDSFEALESGRIPDVILVKKTY--PNRRKKSRPRNWKLRSI 428
Query: 324 EMEVDGSKCGA------------DREKVNNEYEEFLRDL 350
E + + G D++ V +YE FLRDL
Sbjct: 429 AKEAEDVQDGTVGRGALGRRGGVDQKNVERDYELFLRDL 467
>gi|358053876|dbj|GAB00009.1| hypothetical protein E5Q_06711 [Mixia osmundae IAM 14324]
Length = 534
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 142/492 (28%), Positives = 212/492 (43%), Gaps = 129/492 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG + N S +CV CL++ VDIT+++ K ANI C
Sbjct: 17 VLCADCGTAIEPNNSGLCVNCLRNTVDITDAIPKQANINYCRNCERYLSPPQTWVIAELE 76
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSR 82
++++KLTVQKEVL +++Q +
Sbjct: 77 SRELLAICLRKLRGLKTVRLIDAGFIWTESHSKRLRVKLTVQKEVLASTVLQQ--IFEVE 134
Query: 83 NITCVNLVPGFMQ-TGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
I P Q HW A VQ +LI KH A +K++
Sbjct: 135 YIVQYGQCPDCTQLAAKQHWKAVVQARQKVDHKKTFLFLEQLILKHGADKDTVSVKEVRD 194
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++FF++ + A K VEF+ V P + + +QL+S+ T++ K T SVEI I
Sbjct: 195 GLDFFYASKQAAAKMVEFLQAVAPVKMKQSEQLISQDTQNSTSNYKTTFSVEILPICKDD 254
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A +L N+G V+CT+V NSI L+DP TL + A Y+R+PF L
Sbjct: 255 LVCLPLKVARSLSNIGQIVVCTRVGNSIHLIDPVTLHTADITAPVYFRAPFPPLAPLSGA 314
Query: 237 VEYIVLDV-------KVA-----------------STENDTILSTRTHLGHLLILGDYAI 272
VE++VLD+ KVA + E+DTI TRTHLG +L GD +
Sbjct: 315 VEFVVLDIEPTQHPPKVAGKGRFMLADAQVTPISGTMESDTIYHTRTHLGAVLKAGDTVM 374
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV--DGS 330
GY LH AN N+ ++ K+ P+ I ++K+Y N+ K K +L+ + E DG
Sbjct: 375 GYQLHSANFNNTAWDSLKTDRIPEVILVRKTY--PNRAKKSKGRKWRLRSMAKEAGEDGI 432
Query: 331 KCG-------------ADREKVNNEYEEFLRDLMASVTDKEDV-------PSVPLDYLLA 370
G A++ + +YE FLRD+ ++ V P +D +
Sbjct: 433 GLGRERAVKAGRMPGHAEQARAEADYEAFLRDIEEDEEMRQGVNLYKKPKPQAAVDTM-- 490
Query: 371 DLDSSDKEEGDD 382
D++S E DD
Sbjct: 491 DVESVADTEADD 502
>gi|328871042|gb|EGG19414.1| 60S ribosomal export protein [Dictyostelium fasciculatum]
Length = 526
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 118/440 (26%), Positives = 202/440 (45%), Gaps = 113/440 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + +N SNMCV C++S+VDITE + K + C
Sbjct: 12 ILCCICGVLIAANPSNMCVDCIRSQVDITEGIPKQLMVQWCRGCNRYLQPPNHWAACELE 71
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVVM-- 80
++K+KLT+QKEV I++Q +V
Sbjct: 72 SRELLTLCIKRIKGLTKVKLVDAGWVWTEPHSRRLKVKLTIQKEVFASAILQQVFIVEFV 131
Query: 81 ---SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
+ +C L D W+A VQL ++I KH+A ++A IK
Sbjct: 132 VSGQQCTSCQRL------DAKDTWNAVVQLRQKVDHKRTFLFLEQVILKHNAHSQALNIK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++F+F+ ++HA KFVEF+ + P +S+ +QL+S ++ K++ SVEI +
Sbjct: 186 ERSDGLDFYFANKNHASKFVEFISAIAPVRSKKSEQLISHDEQNNTANHKHSNSVEIVPL 245
Query: 184 SAHN-----------LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
+ LG +GP V+ TKV+N I ++DP +L+ + + +W +PF+A+
Sbjct: 246 CKDDLVCLPPKLMTSLGGIGPIVLVTKVSNVIHIIDPNSLQTAEISSTSFWNTPFRAITG 305
Query: 233 SRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIG 273
+Q++E+ VLDV + ND RTHLGHL GD A+G
Sbjct: 306 YKQMIEFTVLDVSLTGERKGKFALADVQLVRSSDFGVNDNTFFVRTHLGHLFNAGDLALG 365
Query: 274 YDLHEANQNDIELE---NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGS 330
YDL A ND ++E ++S P+ + +KK++ + ++ ++ + E +
Sbjct: 366 YDLSTAIFNDSDMEAIGKHRSANIPEIVLVKKTFPVTDLKQRHWT----IRNMNKEGQEN 421
Query: 331 KCGADREKVNNEYEEFLRDL 350
D EK + ++F+R++
Sbjct: 422 IRKNDVEKAERDQQDFVREI 441
>gi|403418058|emb|CCM04758.1| predicted protein [Fibroporia radiculosa]
Length = 552
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 201/462 (43%), Gaps = 133/462 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+CV CL++ VDITE + K A+++ C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQASLSFCRNCERFLSPPSSWTIAQPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQ-----SD 77
++++ LT+QKEVL I+EQ
Sbjct: 72 SQELLAICLKKLKGLNKVRLTEAHFIWTEPHSKRLRVSLTIQKEVLTSTILEQIFEIEYL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C L + W A VQ+ +LI KH A +K
Sbjct: 132 VQYGQCPDCTKLA------AKNTWKALVQVRQKVPHKRTFLFLEQLILKHGAQKDTISVK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI--- 180
++ G++FF+S RSHA+K V+F+ VVP +S+ +QL+S T + KYT SVEI
Sbjct: 186 EVKDGLDFFYSQRSHAIKMVDFLTSVVPIRSKASEQLLSADTHTNTANFKYTYSVEIIPV 245
Query: 181 --------SAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A + +L N+ P +C++V N++ LLDP TL+ + A YWR+PF +L T
Sbjct: 246 CKDDLVCLPAKLSRSLSNITPLTMCSRVGNTLHLLDPSTLQSSEVSAQVYWRTPFDSLTT 305
Query: 233 SRQLVEYIVLDVKVASTEN--------------------------------DTILSTRTH 260
LVE+ VLD++ + T + I TRTH
Sbjct: 306 VSDLVEFTVLDIEPSGTTRGKWVLADAQVALSGAFKSHDDDAMDDDSGAGANQIFHTRTH 365
Query: 261 LGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKL 320
LG +L GD +GY L AN N + PD + +KK+Y N+RK + +L
Sbjct: 366 LGGILQPGDAVLGYYLSNANFNSDAFAALPAHRIPDVVLVKKAY--PNRRKKNRARNWRL 423
Query: 321 KPL-EMEVDGSKCGA-----------DREKVNNEYEEFLRDL 350
+ + + E + G+ D+ KV+ +YE FLRDL
Sbjct: 424 RSIAKEEGEEGDTGSGRGVVGRMGGRDKRKVDEDYELFLRDL 465
>gi|294933199|ref|XP_002780647.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
gi|239890581|gb|EER12442.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
Length = 547
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 131/441 (29%), Positives = 193/441 (43%), Gaps = 122/441 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V CC CG +M N SNMCV C+K EVDITE + K A + C
Sbjct: 27 VLCCVCGASMTPNQSNMCVNCMKGEVDITEGISKQAVVNYCRECNRYQRPPWVPCEPESR 86
Query: 55 ------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSRNI 84
++K+KLTVQKEV+ G +++QS +V
Sbjct: 87 ELLGICLKKIKGLNKVKLVDANFIWQAPTSKRMKVKLTVQKEVMNGAVMQQSMIV----- 141
Query: 85 TCVNLVPGFMQTG-------PDHWDAAVQL--------------ELIQKHDAPARATKIK 123
+ + + Q P W+A+VQ+ +LI KHDA + IK
Sbjct: 142 ---DFIVAWQQCDDCKRTYTPHTWNASVQVRQKTDHKRTFYYLEQLILKHDAHEKVVGIK 198
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++F F RSHA KF EFV VP++ + K L+S + KYT +++ +
Sbjct: 199 RTPDGLDFHFGHRSHAQKFSEFVLSQVPSRVKQSKHLISHDAHNTTYNYKYTTLIDMCPV 258
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
+ LG + P + TKV + I L+DP T + L +YW++PF +L T
Sbjct: 259 CKDDVVFLPKALKNKLGGVNPIQVVTKVASQIRLVDPLTGKVSDLAGVEYWKNPFDSLLT 318
Query: 233 SRQLVEYIVLDVK-----------------------VASTENDTILSTRTHLGHLLILGD 269
R LVE+ VL+V+ + + I++ R+HLG +L GD
Sbjct: 319 RRHLVEFTVLNVEEDTGPARAAAFNKRGLKGYTMVDLELMRDPEIITVRSHLGGVLQPGD 378
Query: 270 YAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
GYDL N + I+ E + D I +KK+Y QRK P L+ LE E D
Sbjct: 379 LCAGYDLRTVNVSGIDEEMLEK-TNLDVIIVKKTYTRHRQRKR----PWILRRLEREED- 432
Query: 330 SKCGADREKVNNEYEEFLRDL 350
A E + +YE+F+RD+
Sbjct: 433 ----AGEESNDGDYEQFMRDI 449
>gi|340373689|ref|XP_003385373.1| PREDICTED: 60S ribosomal export protein NMD3-like [Amphimedon
queenslandica]
Length = 504
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 120/449 (26%), Positives = 207/449 (46%), Gaps = 108/449 (24%)
Query: 12 KTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC----------------- 54
+ + CC+CG + N +NMCV CL+++VDITE + K + I C
Sbjct: 16 QRILCCQCGTMIEPNPANMCVACLRTQVDITEGIPKQSTIYFCRSCERYLQPPSGWVSCS 75
Query: 55 ----------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV- 79
++K+KLT+QKE+L G +++Q VV
Sbjct: 76 LESRELLALCLKKLKGLGKVHLVDAGFIWTEPHSKRLKIKLTIQKEMLAGTLLQQVFVVE 135
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + D+W A VQ+ +LI KH+ + +IK+
Sbjct: 136 FIVHHQMCEDCQ---RREAKDYWKAVVQVRQKTTHKKTFLYLEQLILKHNIHSNVLRIKE 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+ G++F+++ + A K VEF+ VVP++ + ++L+S S K+T SVEI +
Sbjct: 193 IKGGLDFYYAQKQDARKMVEFIMSVVPSKYKTSQELISHDVHSNTYNYKFTFSVEIVPVC 252
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A++LGN+ P VIC+KV +S+ ++DP L+ + +D YWR+PF +L
Sbjct: 253 RDNVVCLPRKVANSLGNISPVVICSKVNSSLQVIDPTNLQVAEMSSDIYWRTPFTSLFDH 312
Query: 234 RQLVEYIVLDVKVAS----------------------TENDTILSTRTHLGHLLILGDYA 271
RQL +++VL ++V E D + RTHLGH + GD
Sbjct: 313 RQLTQFLVLQIEVLPGQFVSRSGSRKHVLSEAWVAPLEELDRQMYCRTHLGHFINTGDVV 372
Query: 272 IGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSK 331
+G D AN N+ + K+ PD + +KK+Y ++ +R ++ + P E E +
Sbjct: 373 LGVDFTRANLNNEHFDKLKTTEIPDVVLVKKAYGDRLRRHRKRKWELQSLPKETEDKMEE 432
Query: 332 CGADREKVNNEYEEFLRDLMASVTDKEDV 360
+R+ ++ F+ DL T ++D+
Sbjct: 433 GEEERDLLD-----FMEDLEEDKTYRQDI 456
>gi|366992630|ref|XP_003676080.1| hypothetical protein NCAS_0D01360 [Naumovozyma castellii CBS 4309]
gi|342301946|emb|CCC69717.1| hypothetical protein NCAS_0D01360 [Naumovozyma castellii CBS 4309]
Length = 521
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 141/501 (28%), Positives = 214/501 (42%), Gaps = 137/501 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG + S MC C+K VDITE + + ANI+ C
Sbjct: 18 TVLCCNCGTPIDGSTGLVMCYDCIKMTVDITEGIPREANISFCRNCERFLQPPGQWIRAD 77
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVM 80
+I++KLTVQ E + I++Q+ V
Sbjct: 78 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMANTIIQQTFEV- 136
Query: 81 SRNITCVNLVPGFMQTGPDH-WDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ P ++ H W AAVQ+ +LI KH+A I +
Sbjct: 137 -EYVVIAMQCPDCAKSYTTHTWRAAVQIRQKVPHKRTFLYLEQLILKHNAHVDTISISEA 195
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++FF+S ++HAVK ++F+ VVP + + ++L+S+ T + + K++ SVEI I
Sbjct: 196 KDGLDFFYSQKNHAVKMIDFLNSVVPMKYKKSEELISQDTHTGSATYKFSYSVEIVPICR 255
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ FV+C+K++N++ LDP TL+ L A YWRSPF AL
Sbjct: 256 DDLVVLPKKLAKHLGNISQFVLCSKISNTVQFLDPNTLQTADLSAQVYWRSPFNALADVS 315
Query: 235 QLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGYD 275
QL E+IVLDV+ ND + TR+HLG +L GD +GY
Sbjct: 316 QLTEFIVLDVESTGISKGKRVLADVTIARSADLGINDQVYYTRSHLGAILHAGDTVMGYF 375
Query: 276 LHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL---EMEVDGSKC 332
+ +N N + PD + +KK Y QRK RK KLK + E+D ++
Sbjct: 376 IANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKTRKNRNWKLKRMAREHKEIDAAQD 431
Query: 333 GADR------EKVNNEYEEFLRDLMASVTDKE-------------------------DVP 361
+ R E+ +YE FL++L ++ D P
Sbjct: 432 YSSRVQKQDMERAERDYELFLQELEEDDEMRQTINLYKNNAPAPAPQPHEIEEDEDPDAP 491
Query: 362 SVPLDYLLADLDSSDKEEGDD 382
+ +D LL +LD ++G D
Sbjct: 492 QIDIDELLDELDEMTLDDGTD 512
>gi|326926160|ref|XP_003209272.1| PREDICTED: 60S ribosomal export protein NMD3-like [Meleagris
gallopavo]
Length = 504
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 139/505 (27%), Positives = 215/505 (42%), Gaps = 136/505 (26%)
Query: 4 AAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------- 55
AA + + CC CG+ + N +NMCV CL++ VDITE + K ++ C
Sbjct: 5 AAPAAPTQGNILCCHCGVPIPPNPANMCVGCLRARVDITEGIPKQLGVSFCKQCERYLQP 64
Query: 56 --------------------------------------------KIKLKLTVQKEVLEGV 71
++KLKLTVQKEV+ G
Sbjct: 65 PGTWIQCALESRELLALCLKKIKASLSKVRLIDAGFIWTEPHSKRLKLKLTVQKEVINGA 124
Query: 72 IVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDA 115
+++Q VV + + C + D W A VQ+ +LI KH
Sbjct: 125 VLQQVFVVEYLIQPQMCEDC---HRIEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKHRL 181
Query: 116 PARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT 175
+IK++ G++F++S + HA K V+F+ VP++S+ ++L S S K T
Sbjct: 182 HQNTLRIKEIHDGLDFYYSSKQHAQKMVDFLQCTVPSRSKSSQRLTSHDIHSNVYNYKST 241
Query: 176 CSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR 224
SVEI + A +LGN+ +C +VT+++ L+DP TL+ +D + YWR
Sbjct: 242 FSVEIVPVCKDNVVCLSPKLAQSLGNMSQICVCIRVTSTVHLIDPSTLQIAEIDGNTYWR 301
Query: 225 SPFKALHTSRQLVEYIVLDV---------------------------KVASTENDTILST 257
PF +L +QL E+IV+D+ K + D
Sbjct: 302 HPFNSLFNPKQLEEFIVMDINRVQEKKKPAGAGARSNKHTLAEAWVKKTSELNTDHQYFC 361
Query: 258 RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
THLGH+L GD +G+DL N ND + PD + IKKSY ++ +R+HR+
Sbjct: 362 CTHLGHILNHGDLVLGFDLANCNLNDEFVNKMSPHNVPDVVLIKKSY-DRAKRQHRR--N 418
Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKE 358
KLK LE + +G +R +Y++FL DL + S TD +
Sbjct: 419 WKLKELERDREGMDTDDER-----QYQDFLEDLEEDEAIRKNINIYRNVDVPVESDTDDD 473
Query: 359 DVPSVPLDYLLADLDSSDKEEGDDS 383
P + L +L DL S+ G +
Sbjct: 474 GAPRISLSEMLEDLHISEDATGGEG 498
>gi|410909840|ref|XP_003968398.1| PREDICTED: 60S ribosomal export protein NMD3-like [Takifugu
rubripes]
Length = 504
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 210/500 (42%), Gaps = 137/500 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + N +NMCV CL+++VDI+E + K + C
Sbjct: 15 ILCCTCGVPIPPNPANMCVACLRTQVDISEGIPKQVTVHFCKQCERYLQPPATWMQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
+IK+K+T+QKEVL G I++Q VV
Sbjct: 75 SRELLSLCLKKIKSSMSKVRLIEAGFLWTEPHSKRIKMKVTIQKEVLNGAILQQVFVV-- 132
Query: 82 RNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ + + D W A VQ+ +LI KH + A IK+M
Sbjct: 133 EYVVQYQMCDDCHRVEAKDFWKAVVQVRQKTAHKKTFYYLEQLILKHKLHSNALNIKEMH 192
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
GI+F++ + HA K V+F+ VP +S+ ++L+S S K T SVEI +
Sbjct: 193 EGIDFYYGLKQHAQKMVDFLQCTVPCRSKTSQRLISHDIHSNTYNYKSTFSVEIVPVCKD 252
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
A +LGN+G +C +VT++I L+DP TL+ +D + YWR+PF +L RQ
Sbjct: 253 NVVCLSPRLAQSLGNMGQVCVCVRVTSTIHLIDPRTLQIAEVDGNTYWRNPFNSLCNPRQ 312
Query: 236 LVEYIVLDVKV-------------------------ASTENDTI--LSTRTHLGHLLILG 268
L E+IV+D+ + ++E DT RT LGHLL +G
Sbjct: 313 LEEFIVMDIDIIRDQKLGAGAGMRSSRHTLAEVWVQKTSEMDTSQQYHCRTFLGHLLNIG 372
Query: 269 DYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
D +G+D +N ND L PD + IKK Y + K R K EM D
Sbjct: 373 DLVLGFDFANSNINDEYLNKMNPHHIPDVVLIKKGYDRIRRVKRR-----NWKLQEMARD 427
Query: 329 GSKCGADREKVNNEYEEFLRDL--------------------MASVTDKEDVPSVPLDYL 368
D E+ +Y++FL DL + S TD + P + L +
Sbjct: 428 REGMDTDDER---QYQDFLEDLEEDEALRKNINIFRDASKIPVESDTDDDGAPQISLAEM 484
Query: 369 LADLDSSDKE--EGDDSMIE 386
L +L D EG D M +
Sbjct: 485 LEELSLMDATGGEGADMMTD 504
>gi|4753704|emb|CAB42049.1| Nmd3 protein [Drosophila melanogaster]
Length = 521
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 145/512 (28%), Positives = 222/512 (43%), Gaps = 147/512 (28%)
Query: 3 QAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------- 54
+ AG AV + CC+CG+ + N +NMCVTCL++ VDITE++ K A + C
Sbjct: 17 KGAGSNAV---ILCCECGVAIQPNPANMCVTCLRNHVDITENVPKQAVLHFCRNCERYLQ 73
Query: 55 -------------------------------------------PKIKLKLTVQKEVLEGV 71
+IK+KLTV E++ G
Sbjct: 74 PPNEWIQAALESRELLAICLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEIIGGT 133
Query: 72 IVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDA 115
+++Q VV +N C + D W VQ+ +LI KH A
Sbjct: 134 MLQQVFVVEFTVQNQMCNDC---HRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKHKA 190
Query: 116 PARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT 175
IK G++FF++ +HA + V+F+ +VP + K+L+S S N KY
Sbjct: 191 HENTLGIKPEHGGLDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYN 250
Query: 176 CSVEISAISA-----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR 224
SVEI+ +S H LGNL P V+ +V++SI L+DP T + L + Y+R
Sbjct: 251 WSVEIAPVSKDSAVCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFR 310
Query: 225 SPFKALHTSRQLVEYIVLDVKVASTE------------------------------NDTI 254
+PF+A+ +QLVEY+V+D+ V + ND
Sbjct: 311 APFEAVCNPKQLVEYVVMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNP 370
Query: 255 LSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRK 314
+ TR+HLGHLL +GD +GY+ ++ ND+E + S PD I ++K Y + + R
Sbjct: 371 IHTRSHLGHLLKVGDSVMGYNTARSHINDLEFDKLSSDEIPDVILVRKHYDRQTRLSQR- 429
Query: 315 PNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL-----------MASVTDKE----- 358
K+K L E A E+ +Y EFL DL + T+K
Sbjct: 430 --VWKIKHLAAE-------ATDERSKYDYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEV 480
Query: 359 -----DVPSVPLDYLLAD--LDSSDKEEGDDS 383
DVP + L+ +L D L+ +D E G++
Sbjct: 481 QAAGGDVPQITLEEMLEDMTLECADDEMGEEG 512
>gi|241856628|ref|XP_002416064.1| NMD protein affecting ribosome stability and mRNA decay, putative
[Ixodes scapularis]
gi|215510278|gb|EEC19731.1| NMD protein affecting ribosome stability and mRNA decay, putative
[Ixodes scapularis]
Length = 508
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 141/488 (28%), Positives = 207/488 (42%), Gaps = 122/488 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + N SNMCV CL+ EVDI+E + K + C
Sbjct: 16 ILCCTCGVPVEPNPSNMCVACLRQEVDISEGIPKQGTLYFCRGCERYLQPPAHWVHASLE 75
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-MS 81
+I+++LTVQKEV G I++Q VV +
Sbjct: 76 SRELLALLLKKIKGLNRVRLVDAGFEWTEPHSRRIRVRLTVQKEVAGGTILQQVFVVEFA 135
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
N + + D W A VQ+ +L+ KH A IK
Sbjct: 136 VNHQMCD--KCHRREAKDFWRALVQVRQKVQHKKTFLYLEQLMLKHQAHKDCLNIKACHG 193
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++F+FS + A K V+F+ +VP + +QL+S S K T SVEI+ +
Sbjct: 194 GLDFYFSKKDEARKLVDFLQTMVPCRYVMSQQLISHDVHSNVFNYKNTFSVEIAPVCKDD 253
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A +LG++ +C +VT+SI L+DP TL+ L A Q+WR+PF+ L +QL
Sbjct: 254 VVCLPPAVARSLGSMSQICVCLRVTSSIHLMDPSTLQVSELSAQQFWRNPFQGLCAPKQL 313
Query: 237 VEYIVLDVKVASTENDTILS------------------------------TRTHLGHLLI 266
EYIV+DV + T + RTHLGHLL
Sbjct: 314 TEYIVMDVSHVKDVDRTFFAGQGKLSFRHVLADAWVIRACDLGTHENYTHCRTHLGHLLK 373
Query: 267 LGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME 326
GD +G+DL AN ND E K+ P+ + +KK + ++ R ++ K L+ME
Sbjct: 374 PGDSVLGFDLANANINDAHFEKLKADKRPEVVLVKKVFGDRMSRSQKRRWKLKRLQLDME 433
Query: 327 VDGSKCGADREKVNNEYEE----------FL-RDLMASVTDKED--VPSVPLDYLLADLD 373
+ S D + E EE +L R+ +A TD ED +P + L +L DL
Sbjct: 434 TETSSVARDYTEFLEELEEDAVYRQNVNVYLDREKLAVDTDDEDGELPKITLQEMLDDLC 493
Query: 374 SSDKEEGD 381
D GD
Sbjct: 494 LEDDPMGD 501
>gi|195456708|ref|XP_002075252.1| GK17003 [Drosophila willistoni]
gi|194171337|gb|EDW86238.1| GK17003 [Drosophila willistoni]
Length = 511
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 144/497 (28%), Positives = 214/497 (43%), Gaps = 144/497 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V CC+CG+ + N +NMCVTCL++ VDITE++ K A + C
Sbjct: 21 VLCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPTEWIQASLE 80
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--M 80
+IK+KLTV ++ G +++Q VV
Sbjct: 81 SRELLAICLKKLKGLKDVKLVDAGFIWTEQHSKRIKVKLTVHGQISGGTVLQQVFVVEFT 140
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+N C + D W VQ+ +LI KH A IK
Sbjct: 141 VQNQMCNDC---HRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEH 197
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA- 185
G++F+++ +HA + V+F+ +VPA+ K+L+S S N KY+ SVEI+ IS
Sbjct: 198 GGLDFYYANENHARRMVDFLQTMVPARVTTSKRLISHDIHSNNYNYKYSWSVEIAPISKD 257
Query: 186 ----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
H LGNL P + +V++SI L+DP T + + + Y+RS F+A+ +Q
Sbjct: 258 SAVCLTKKLRHQLGNLSPLCLVNRVSSSIHLIDPLTAQIAEITSQVYFRSAFEAICNPKQ 317
Query: 236 LVEYIVLDVKV--------------------------------ASTENDTILSTRTHLGH 263
LVEYIV+D+ V TEN + TR+HLGH
Sbjct: 318 LVEYIVMDIDVIMDKDRKSYPGQGQVSFKHALCDIWVVRASELGLTEN--TIHTRSHLGH 375
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
LL +GD +GY+ EAN ND E E S + PD I ++K Y +++ R K+K L
Sbjct: 376 LLKVGDSVMGYNTGEANINDPEFEKLSSDIIPDVILVRKHYDRQSRLSQR---VWKIKHL 432
Query: 324 EMEVDGSKCGADREKVNNEYEEFLRDL-----------------MASVTDKEDVPSVPLD 366
E A E+ +Y EFL DL + +D+P + L
Sbjct: 433 AAE-------ATDERSKYDYNEFLDDLEEHEDLRGQVNIYRDSNKTAPEATDDLPQINLA 485
Query: 367 YLLAD--LDSSDKEEGD 381
+L D L+ +D E GD
Sbjct: 486 EMLEDLTLECADDEMGD 502
>gi|403265970|ref|XP_003925178.1| PREDICTED: 60S ribosomal export protein NMD3 [Saimiri boliviensis
boliviensis]
Length = 508
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 141/505 (27%), Positives = 217/505 (42%), Gaps = 134/505 (26%)
Query: 2 VQAAGIFAVRKTVS----------CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANI 51
V+A G ++ VS CC+CGI + N +N+CV CL+S+VDI++ + K +I
Sbjct: 10 VKAKGKIGIQWLVSENRKRGSLSLCCECGIPVSPNPANICVACLRSKVDISQGIPKQVSI 69
Query: 52 TPCP----------------------------------------------------KIKL 59
+ C ++K+
Sbjct: 70 SFCKQCQRYFQPPGTWIQCALESRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKV 129
Query: 60 KLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--ELIQKHDA 115
KLT+QKEV+ G I++Q VV + ++ C + D W A +Q+ +LI K+
Sbjct: 130 KLTIQKEVMNGAILQQVFVVDYVVQSQMCGDC---HRVEAKDFWKAVIQVRQKLILKYGM 186
Query: 116 PARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT 175
+IK++ G++F++S + HA K VEF+ VP + + ++L+S+ S K T
Sbjct: 187 HQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKST 246
Query: 176 CSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR 224
SVEI I A +LGN+ +C +VT++I L+DP TL+ +D +W
Sbjct: 247 FSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADVDGSTFWS 306
Query: 225 SPFKALHTSRQLVEYIVLDV---------------------------KVASTENDTILST 257
PF +L +QL E+IV+D K + D
Sbjct: 307 HPFNSLCHPKQLEEFIVMDCSIVRDIKRGAGAGMISKKHTLGEVWVQKTSEMNTDKQYFC 366
Query: 258 RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
RTHLGHLL GD +G+DL N ND + S PD + IKKSY N+ K ++
Sbjct: 367 RTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSY---NRTKRQRRRN 423
Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKE 358
KLK L E + +R +Y++FL DL + S TD E
Sbjct: 424 WKLKELARERENMDTDDER-----QYQDFLEDLEEDETIRKNVNIYRDSTIPVESDTDDE 478
Query: 359 DVPSVPLDYLLADLDSSDKEEGDDS 383
P + L +L DL S G++
Sbjct: 479 GAPRISLAEMLEDLHISQDATGEEG 503
>gi|348534719|ref|XP_003454849.1| PREDICTED: 60S ribosomal export protein NMD3-like [Oreochromis
niloticus]
Length = 504
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 139/501 (27%), Positives = 207/501 (41%), Gaps = 139/501 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + N +NMCV CL+++VDI+E + K + C
Sbjct: 15 ILCCTCGVPIPPNPANMCVACLRTQVDISEGIPKQVTVHFCKQCERYLQPPATWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
+IK+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKLKSSMSKVRLIDAGFLWTEPHSKRIKMKLTIQKEVMNGAILQQVFVVEF 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A VQ+ +LI KH IK++
Sbjct: 135 VIQSQMCDDC---HRVEAKDFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTLNIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
GI+F++ + HA K V+F+ VP +S+ ++L+S S K T SVEI +
Sbjct: 192 HEGIDFYYGSKQHAQKMVDFLQCTVPCRSKASQRLISHDIHSNTYNYKSTFSVEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+G +C +VT++I L+DP TL+ +D + YWR+PF L +
Sbjct: 252 DNVVCLSPRLAQSLGNMGQVCVCIRVTSTIHLIDPRTLQIAEVDGNTYWRNPFNGLFNPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV+D+ K + RT LGHLL +
Sbjct: 312 QLEEFIVMDIDIIRDQKLGAGAGMRSNKHTLAEVWVQKTSEMNTSQQYHCRTFLGHLLNI 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+D +N ND L PD + IKKSY + K R K EM
Sbjct: 372 GDLVLGFDFANSNINDEYLNKMNPHHVPDVVLIKKSYDRSRRVKRR-----NWKLQEMAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL--------------------MASVTDKEDVPSVPLDY 367
D D E+ +Y++FL DL + S TD + P V L
Sbjct: 427 DREGMDTDDER---QYQDFLEDLEEDEALRKNVNIFRDASKIPVESDTDDDGAPCVSLAE 483
Query: 368 LLADLDSSDKE--EGDDSMIE 386
+L +L +D EG D M +
Sbjct: 484 MLEELSLTDATGGEGADMMTD 504
>gi|387017328|gb|AFJ50782.1| 60S ribosomal export protein NMD3-like [Crotalus adamanteus]
Length = 504
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 135/492 (27%), Positives = 207/492 (42%), Gaps = 136/492 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CGI + N +NMCV CL+++VDITE + K I C
Sbjct: 15 ILCCQCGIAIPPNPANMCVACLRTQVDITEGIPKQVTIHFCKQCERYLQPPAAWLQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLSLCLKKIKTSLSKVRLIDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVEY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A VQ+ +LI KH +IK++
Sbjct: 135 IVQSQMCEDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKHRLHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F+++ + HA K V+F+ VP + + ++L+S S K T SVEI +
Sbjct: 192 HDGLDFYYASKQHAQKMVDFLQCTVPCRIKSSQRLISHDIHSNTYNYKSTFSVEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ IC +VT++I ++DP TL+ +D + YWR PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMSQICICIRVTSAIHIIDPSTLQIAEIDGNNYWRHPFNSLFHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV+D+ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMDISRTYEQKQGAGAGMKSNKHSLAEAWVQKTSELNTDHQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND PD + IKKSY +++ R KLK L+ +
Sbjct: 372 GDLVLGFDLVNCNLNDEFANKMNPHSVPDVVLIKKSYDRTKRQRRRN---WKLKELQRDR 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D +R +Y++FL DL + S D + +P + L +
Sbjct: 429 DNMDTDDER-----QYQDFLEDLEEDETIRKNVNIYKNPVVPVESDIDDDSIPQISLTEM 483
Query: 369 LADLDSSDKEEG 380
L DL S+ G
Sbjct: 484 LEDLQISEDATG 495
>gi|353238409|emb|CCA70356.1| probable NMD3-nonsense-mediated mRNA decay protein [Piriformospora
indica DSM 11827]
Length = 570
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/465 (29%), Positives = 199/465 (42%), Gaps = 132/465 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG + N++N+C+ CL++ VD+TE + K A+I C
Sbjct: 12 VLCADCGTPIEPNSANLCIPCLRNSVDVTEGIPKSASINYCRNCDRFLSPPATWTIAQPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSR 82
++++KLT+QKEV IVEQ V
Sbjct: 72 SRELLAICLKKLKGLNKVRLVDAGFIWTEPHSKRLRVKLTIQKEVFTSTIVEQ--VFEVE 129
Query: 83 NITCVNLVPGFMQ-TGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
+ P + + W A +Q+ +LI KH+A IK++
Sbjct: 130 YVVQHGQCPDCTKLAAKNTWQAVIQVRQKVSHKRTFLFLEQLILKHNAHKDTVSIKEVKD 189
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI---- 183
G++F+++ SHA K VEF+ VVP Q+ QL+SR T S K+T SV+I I
Sbjct: 190 GLDFYYAHESHAQKMVEFLASVVPVQTIRSAQLISRDTHSNTANYKFTHSVQIVPICKDD 249
Query: 184 -------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A +L N+ P IC++V N++ LLDP TL+ + + YWR PF AL + L
Sbjct: 250 LVCIPAKQARSLSNISPLTICSRVGNTVHLLDPSTLQETDVTSPVYWREPFSALASVTDL 309
Query: 237 VEYIVLDVK----------------------VASTEN-------------DTILSTRTHL 261
VE+IVLD++ V+ + N DT TRTHL
Sbjct: 310 VEFIVLDIEPSGVVKGKHVLADAEVAPANSFVSKSGNDADMDMDSHHGSLDTTYHTRTHL 369
Query: 262 GHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLK 321
G +L GD +GY L +N N E+ S PD I +KKSY N+RK K KLK
Sbjct: 370 GGILQPGDTVMGYWLTRSNFNSTAFESLDSSRIPDVILVKKSY--PNRRKKSKQRNWKLK 427
Query: 322 PLEMEV-DGSKCGA---------------DREKVNNEYEEFLRDL 350
+ E +G+ D++KV +YE FL+ +
Sbjct: 428 SMAKEAEEGAGINESGGYGRGALGRRGGLDQKKVERDYEIFLQSI 472
>gi|393243763|gb|EJD51277.1| RNA binding protein [Auricularia delicata TFB-10046 SS5]
Length = 543
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 135/463 (29%), Positives = 204/463 (44%), Gaps = 131/463 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V C CG + N++N+CV CL++ VDITE + K + ++ C
Sbjct: 12 VLCADCGTPIEPNSANLCVACLRNTVDITEGIPKQSALSFCKNCNRFLSPPSAWTIAEPE 71
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--M 80
++K+KLT+QKEV G I++Q VV +
Sbjct: 72 SRELLALCLKKLKGLNKVRLVDAAFVWTEPHSKRLKVKLTIQKEVFAGTILQQVFVVEYI 131
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
++ C + + W A VQ+ +LI KH A +K++
Sbjct: 132 VQHGQCPDCA---RLAAKNTWKALVQVRQKVAHKRTFLFLEQLILKHGAQKDTISVKEVK 188
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++FF++ RSHA+K VEF+ VVP +++ +QL+ T S K+T SVEI+ +
Sbjct: 189 DGLDFFYAQRSHAIKMVEFLAGVVPTRTKGSEQLLGHDTHSNVSNYKFTYSVEIAPLCKD 248
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
A +L N+ P +CT++ NSI LLDP TL+ L A Y+RSP L
Sbjct: 249 DLVCLPMPIARSLSNIHPLTVCTRIGNSIHLLDPSTLQSAELSAQVYFRSPVDPLANISS 308
Query: 236 LVEYIVLDVK--------------------------VASTENDTILS-----------TR 258
L E+ +LD++ A E+D ++ TR
Sbjct: 309 LREFTILDIEPTGLTRGKWVLADAQVALGSAFRSHAAAGAEDDYMMDDGEAGGDGIYHTR 368
Query: 259 THLGHLLILGDYAIGYDLHEANQND---IELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
THLG +L GD A+GY L AN N L++ S PD + +KK+Y + RK +
Sbjct: 369 THLGGILQPGDTALGYFLTRANYNSDAFSALQSSASGTIPDIVLVKKTYPAR--RKKTRA 426
Query: 316 NPPKLKPLEME--------VDGSKCGADREKVNNEYEEFLRDL 350
+LK + E V G G D++KV+ +YE FLRDL
Sbjct: 427 RQWRLKSIAKEAGDTGAEGVVGRMGGRDQKKVDEDYEIFLRDL 469
>gi|196008655|ref|XP_002114193.1| hypothetical protein TRIADDRAFT_27425 [Trichoplax adhaerens]
gi|190583212|gb|EDV23283.1| hypothetical protein TRIADDRAFT_27425 [Trichoplax adhaerens]
Length = 483
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/489 (28%), Positives = 217/489 (44%), Gaps = 132/489 (26%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC--------------------- 54
CC+CG + +N +NMCV C+++ VDITE + K + + C
Sbjct: 2 CCQCGTLIDANPANMCVGCIRAHVDITEGIPKQSTLYFCRFCLRYLQPPSTWVQCVLESR 61
Query: 55 ------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--MSR 82
++K+KLTVQKEVL I++Q VV +
Sbjct: 62 ELLALCLKRLKGLTKVRLVDAGFVWTEPHSKRVKVKLTVQKEVLNCTILQQQFVVEYVVH 121
Query: 83 NITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHG 128
+ C + D+W A Q+ +L+ KH A + A KI +G
Sbjct: 122 HQMCDECQ---RREAKDYWKAVCQVRQRTSHKKTFFYLEQLLIKHQAHSNAVKIVDEANG 178
Query: 129 IEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS---- 184
++FFF+ + + K V+F+ VVP + + + LVS S KYT SVEI I
Sbjct: 179 LDFFFASKDDSRKLVDFLQSVVPCRYKTSQHLVSHDCHSNIYNYKYTFSVEIVPICKDDV 238
Query: 185 -------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLV 237
A++LGN+G +ICT++TN+I L DP TL+ + D +W+ PF + T +QL+
Sbjct: 239 VCLPLKVANSLGNIGQLLICTQITNTIHLTDPTTLQTVSVQPDVFWKQPFHTICTQKQLI 298
Query: 238 EYIVLDVKVASTEN------------------------DTILSTRTHLGHLLILGDYAIG 273
EY +L+++ ++ DT RTHLG+++ GD +G
Sbjct: 299 EYTILEIEFIEQKDARYSSEKYKLADVWIVKSKDLGISDTQFHCRTHLGNIISPGDTILG 358
Query: 274 YDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCG 333
+D++ +N N+ S PD I +KK + +K +R H K N KLK L+ E +
Sbjct: 359 FDINGSNVNNDNFYKMPSRKVPDVILVKKHFGDKRKR-HSKRN-WKLKSLKKETGAN--- 413
Query: 334 ADREKVNNEYEEFLRDLMASVTDKEDV----------------------PSVPLDYLLAD 371
D E + +Y+ FL DL T +++V PS+ L+ +L D
Sbjct: 414 IDMETDDMDYDNFLEDLEEDPTYRQNVNIYKDPKFKGNKDSRPDPDEQLPSIGLEEMLED 473
Query: 372 LDSSDKEEG 380
L D+E+
Sbjct: 474 LCIDDEEDN 482
>gi|348684719|gb|EGZ24534.1| hypothetical protein PHYSODRAFT_480926 [Phytophthora sojae]
Length = 510
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 200/439 (45%), Gaps = 113/439 (25%)
Query: 19 CGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------------- 55
C +V+NA+N CV CLKS+VD+TE + K I C
Sbjct: 2 CATPIVANAANTCVNCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAAELESRELLAM 61
Query: 56 --------------------------KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCV 87
++KLKLTVQKEV+ +I++QS VV + RN C
Sbjct: 62 CLKKINNLNRVKLIDANWIWTEPHSRRLKLKLTVQKEVMSKMIMQQSFVVTFVVRNQQCD 121
Query: 88 NLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFF 133
F W A VQ+ +LI KH A + T I+ G++FFF
Sbjct: 122 ACQASFANQS---WRAVVQVRQRVDHKRTFFFLEQLILKHRAHEKTTNIESHPDGVDFFF 178
Query: 134 SGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--------- 184
S R+HA++FV+F+ E VP + + K+L+S S K+T +VEI+ +
Sbjct: 179 SERNHALRFVDFLQESVPMKLKTAKKLISADNHSNTHNYKFTYAVEIAPVCKDDLVVLPV 238
Query: 185 --AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVL 242
A LGN+ + VT+SI ++DPFT + +D+++YWR PF+AL + + + ++ VL
Sbjct: 239 KLARMLGNMSCLCLVQSVTSSIHVVDPFTTQVAEIDSEKYWRYPFRALRSIKAMTDFTVL 298
Query: 243 D-------------------VKVASTE---------NDTILSTRTHLGHLLILGDYAIGY 274
D ++A E ND T +HLG +L +GD A GY
Sbjct: 299 DSNPMAIPSGGGRAIRVTRKTRLADMEVVRDADFGVNDARFRTVSHLGMILHVGDSARGY 358
Query: 275 DLHEANQNDIELENY--KSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE-MEVDGSK 331
DL A ND +L + PD + +KK + + Q++ R KLK +E +E G
Sbjct: 359 DLTSAVFNDADLAPLVQSGVSLPDVVLVKKMFPRRIQKRARN---WKLKKMEGVEQAGPV 415
Query: 332 CGADREKVNNEYEEFLRDL 350
AD K +YE+FL +L
Sbjct: 416 RKADLSKEEQDYEQFLDEL 434
>gi|302308280|ref|NP_985156.2| 60S ribosomal export protein NMD3 [Ashbya gossypii ATCC 10895]
gi|299789379|gb|AAS52980.2| AER299Cp [Ashbya gossypii ATCC 10895]
gi|374108381|gb|AEY97288.1| FAER299Cp [Ashbya gossypii FDAG1]
Length = 512
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/477 (28%), Positives = 217/477 (45%), Gaps = 117/477 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S+ MC C+K VDITE + + AN++ C
Sbjct: 17 TVLCCNCGVPMDGSSGLVMCYDCIKMTVDITEGIPREANVSFCRNCERFLQPPGQWIRAE 76
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+IK+KLTVQ E + I++Q+ V
Sbjct: 77 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIKVKLTVQGEAMTNTIIQQTFEVE 136
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A+VQ+ +LI KH+A I +
Sbjct: 137 YVVVAMQCADCARSYT---TNTWRASVQIRQKVPHKRTFLYLEQLILKHNAHVDTISISE 193
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++F++S ++HAVK ++F+ VVP +++ ++L+S+ T + K+T SVE++ I
Sbjct: 194 AKDGLDFYYSQKNHAVKMLDFLNAVVPVKAKKSEELISQDTHTGASTYKFTYSVELAPIC 253
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
AHN+GN+ FV+C+KV+N++ LDP TL+ + A YWR+PF L
Sbjct: 254 RDDLVVLPKKLAHNVGNITQFVLCSKVSNTLQFLDPTTLQTADVPASVYWRTPFNNLADV 313
Query: 234 RQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYAIGY 274
QL+E+IVLDV+ VA ND + R+HLG + GD +GY
Sbjct: 314 SQLIEFIVLDVEPTGDVRGRWVLADVTVARASDLGVNDQVYYVRSHLGAICHPGDSVMGY 373
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGS- 330
+ +N N + PD + +KK Y QRK RK KLK + E +D S
Sbjct: 374 YIANSNYNSDLFDTLNFDRVPDVVLVKKLY----QRKTRKNRNWKLKRMAKEHKDIDASQ 429
Query: 331 -----KCGADREKVNNEYEEFLRDLMASVTDKEDVPSVPLDYLLADLDSSDKEEGDD 382
+ D+E+ +YE FL++L D+E ++ L +DS + +E DD
Sbjct: 430 DYSSRQQKVDQERAERDYELFLQELEE---DQEMRQAINLYKNSKPVDSEEMQETDD 483
>gi|224060929|ref|XP_002198571.1| PREDICTED: 60S ribosomal export protein NMD3-like [Taeniopygia
guttata]
Length = 504
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 136/495 (27%), Positives = 210/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +NMCV CL+++VDITE + K + C
Sbjct: 15 ILCCQCGVPIPPNPANMCVGCLRAQVDITEGIPKQGTVHFCKQCERYLQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
+IKLKLTVQKEV+ G +++Q VV
Sbjct: 75 SRELLALCLKKIKASLSKVRLIDAGFIWTEPHSKRIKLKLTVQKEVINGAVLQQVFVVEY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A VQ+ +LI KH +IK++
Sbjct: 135 VVQSQMCEDC---HRIEAKDFWKAVVQVRQKTVHKKTFYYLEQLILKHRLHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K V+F+ VP++S+ ++L+S S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVDFLQSTVPSRSKSSQRLISHDIHSNVYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D + YWR PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMSQICVCIRVTSTIRLIDPRTLQIADIDGNTYWRHPFNSLFHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+I++D+ K + + D THLGH+L
Sbjct: 312 QLEEFIIMDINRVHEKKKGAGAGARSVKHTLAEAWVRKTSELDTDHQYFCCTHLGHILNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND PD + IKKSY +++ R KLK LE +
Sbjct: 372 GDLVLGFDLANCNLNDEFANKMNPQHIPDVVLIKKSYDRCKRQRRRN---WKLKELERDR 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ + +R +Y++FL DL + S TD + P + L +
Sbjct: 429 EATDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRNADIPVESDTDDDGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G +
Sbjct: 484 LEDLHISQDATGGEG 498
>gi|392588879|gb|EIW78210.1| NMD3-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 558
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/455 (29%), Positives = 199/455 (43%), Gaps = 123/455 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+CV CL++ VDITE + K ++++ C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQSSVSFCRNCERFLSPPQAWTLVQPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--M 80
++++ LT+QKEVL ++EQ V +
Sbjct: 72 SQELLAICLKKLKGLNKVRLTDAHFIWTEPHSKRLRVSLTIQKEVLTNTVLEQVFEVEYL 131
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
++ C + + W A VQ+ +LI KH A +K++
Sbjct: 132 VQHGQCPDCA---RLAAKNTWKALVQVRQKVSHKRTFLFLEQLILKHSAQKETISVKEVR 188
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI--- 183
G++FF+S RSHA+K VEF+ VP +S+ +QL+S T S K+T SVEI+ I
Sbjct: 189 DGLDFFYSQRSHAIKMVEFLAGGVPTRSKGSEQLLSTDTHSGTANYKFTYSVEIAPICKD 248
Query: 184 --------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
A L N+ P ICT+V NS+ L DP TL+ + A YWR+PF +L
Sbjct: 249 DLVCIPPKQAKQLSNISPLTICTRVGNSLQLTDPATLQSVEVTAAVYWRAPFASLANVTD 308
Query: 236 LVEYIVLDVKVA----------------------------STENDTILSTRTHLGHLLIL 267
LVE+ VLD++ + S + I TRTHLG +L
Sbjct: 309 LVEFTVLDIEPSGPTRGKWVLADAQTHGGDDEDMLMDYEGSAYANQIFHTRTHLGAILQP 368
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL---- 323
GD +GY L AN N + + PD + +KK+Y N+RK + KL+ +
Sbjct: 369 GDAVMGYHLTNANYNSDDFAAVSADRVPDIVLVKKAY--PNRRKKNRTREWKLRSMAKEE 426
Query: 324 --------EMEVDGSKCGADREKVNNEYEEFLRDL 350
V G G D++KV +YE FLR+L
Sbjct: 427 GEEGETGAGRGVVGRMGGRDQKKVEEDYELFLREL 461
>gi|71019875|ref|XP_760168.1| hypothetical protein UM04021.1 [Ustilago maydis 521]
gi|46099885|gb|EAK85118.1| hypothetical protein UM04021.1 [Ustilago maydis 521]
Length = 550
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 130/465 (27%), Positives = 199/465 (42%), Gaps = 131/465 (28%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------- 54
A + V C CG + N +N+C++CL++ VDITES+ K A + C
Sbjct: 7 AAQHMVLCADCGTPIAPNNANLCLSCLRNSVDITESVPKQATVNFCRNCERYLNPPNSWV 66
Query: 55 -------------------------------------PKIKLKLTVQKEVLEGVIVEQSD 77
++++KLTVQKEV I++Q
Sbjct: 67 PARLESRELLAICLKKLKGLNKVRLIDAGFIWTEPHSKRLRVKLTVQKEVFTSTILQQYF 126
Query: 78 -----VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPAR 118
V + C L + W A VQ+ +LI KH+A
Sbjct: 127 EVEFVVQYGQCPDCTRLA------AKNTWRAMVQVRQKVQHKRTFLYLEQLILKHNAHQN 180
Query: 119 ATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSV 178
I + G++FF++ R+HA+K VEF+ VVP ++ +Q++S + K+T SV
Sbjct: 181 TVSINEKKDGLDFFYTQRAHAIKMVEFLNSVVPIKTTKSEQVISMDVHTSTTNYKFTYSV 240
Query: 179 EISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPF 227
EI+ I A LGN+G V+C KVTNS+ +DP +L+ + A++YWR P
Sbjct: 241 EIAPICKDDLVCLPLKMAKQLGNIGQLVLCHKVTNSLRFIDPISLQIAEVPAEKYWRDPQ 300
Query: 228 KALHTSRQLVEYIVLDVK-----------------------------VASTENDTILSTR 258
AL T ++VE++VLD++ + E D + TR
Sbjct: 301 PALATIPEMVEFLVLDIEPTGRYATNTHGVQNRRLEEADAQVSPLNAASFGEADAVYHTR 360
Query: 259 THLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPP 318
THLG +L GD +GY L AN N + + PD + +KKSY E+ +R K
Sbjct: 361 THLGAILQPGDTVMGYYLRIANFNSATWDTIPADRMPDVVLVKKSYPERKKRS--KNRMW 418
Query: 319 KLKPLEMEVDGSKCGA-------------DREKVNNEYEEFLRDL 350
KLK + E + + D ++V +YE FLR+L
Sbjct: 419 KLKSMAKEAEDATTEGAVGRGAVGRRGGLDSQRVERDYELFLREL 463
>gi|380475829|emb|CCF45046.1| NMD3 family protein [Colletotrichum higginsianum]
Length = 498
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 135/451 (29%), Positives = 207/451 (45%), Gaps = 117/451 (25%)
Query: 8 FAVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP---------- 55
++ T+ CC CG I + A +C C+K VDI++ +Q+ A + C
Sbjct: 1 MSMHATILCCNCGAPIDGTTAAGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLLPPS 60
Query: 56 -----------------------------------------KIKLKLTVQKEVLEGVIVE 74
++K+K+T+Q EV GV+++
Sbjct: 61 SWVVAAPESRELLALCLKKLKGLNKIRIIDASFVWTEPHSRRVKVKITIQDEVQTGVLLQ 120
Query: 75 QS--DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPAR 118
Q+ + + C + + + W A+VQ+ +LI KH A
Sbjct: 121 QAFEAIYIVAYQQCPDCAKSYT---ANVWRASVQVRQKVLHKRTFLFLEQLIMKHGAHRD 177
Query: 119 ATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSV 178
IK+ GI+FFFS R+ A KF +F+ VVP +++ ++L+S+ + K+T SV
Sbjct: 178 TLNIKEAKDGIDFFFSARNQAEKFCDFLNSVVPCKAKKSQELISQDVHTSTKSFKFTFSV 237
Query: 179 EISAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPF 227
E+ I +L GN+ P VIC K+ S+ LLDP TL+ + A YWR+PF
Sbjct: 238 ELVPICRDDLVAMPIKLAKASGNISPLVICHKIGTSVYLLDPNTLQTADISAAIYWRAPF 297
Query: 228 KALHTSRQLVEYIVLD---------------VKVASTE----NDTILSTRTHLGHLLILG 268
+L +Q VE+IV+D V+VA ND RTHLG+LL G
Sbjct: 298 YSLADVKQFVEFIVMDIEPTNITKGKWRLAEVQVARASDLGVNDKTYFARTHLGNLLHAG 357
Query: 269 DYAIGYDLHEANQNDIELEN------YKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
D +GY L N N+ E + Y S + PD + +KK Y N+RKHR N KLK
Sbjct: 358 DSVLGYMLTGTNFNNEEFDAIEASGVYASTI-PDVMLVKKHY--PNRRKHRNRN-WKLKR 413
Query: 323 L---EMEVDGSKCGADREKVNNEYEEFLRDL 350
+ E E+ K AD++++N +YE+FLRD+
Sbjct: 414 MNKDEGELLPKK--ADQDRMNEDYEQFLRDV 442
>gi|89886075|ref|NP_989367.2| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
gi|89268245|emb|CAJ82727.1| nmd3 homolog (s. cerevisiae) [Xenopus (Silurana) tropicalis]
Length = 504
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 136/496 (27%), Positives = 212/496 (42%), Gaps = 136/496 (27%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
+ CC+CGI + N +NMCV+CL+ +VDI+E + K ++ C
Sbjct: 14 NILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCAL 73
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 74 ESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVD 133
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ ++ C + D W A VQ+ + I KH ++K+
Sbjct: 134 YIVQSQMCDDC---HRVEAKDFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKE 190
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+ G++F+++ + HA K VEF+ VP + + ++L+S + K T SVEI +
Sbjct: 191 IHDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVC 250
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +LGN+ IC +VT++I L+DP TL+ +D + YWRSPF +L
Sbjct: 251 KDNLVCLSPKLAQSLGNMNQICICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHP 310
Query: 234 RQLVEYIVLDVKVASTE----------NDTILST-----------------RTHLGHLLI 266
+QL E+IV+D + N IL+ RTHLGHLL
Sbjct: 311 KQLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQQYHCRTHLGHLLN 370
Query: 267 LGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME 326
GD +G+DL N ND + PD + IKKSY +++ R KLK +E +
Sbjct: 371 PGDLVLGFDLVNCNLNDEFINKMNPHHIPDVVLIKKSYDRTKRQRRRN---WKLKEIERD 427
Query: 327 VDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDY 367
+G +R +Y++FL DL + S TD+E P + L
Sbjct: 428 REGMDTDDER-----QYQDFLEDLEEDEVIRKNVNIYKNANLPVESDTDEEGAPRISLAE 482
Query: 368 LLADLDSSDKEEGDDS 383
+L DL S G +
Sbjct: 483 MLEDLHISQDATGGEG 498
>gi|385304926|gb|EIF48926.1| putative 60s ribosomal subunit nuclear export factor nmd3 [Dekkera
bruxellensis AWRI1499]
Length = 516
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 133/494 (26%), Positives = 212/494 (42%), Gaps = 132/494 (26%)
Query: 11 RKTVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP-------------- 55
R TV CC CG+ M S MC C+K VDIT+ + + +++ C
Sbjct: 20 RATVLCCNCGVPMDGSTGLTMCYDCIKQNVDITQGIPREMSLSYCRNCERFLQPPSQWIH 79
Query: 56 -------------------------------------KIKLKLTVQKEVLEGVIVEQSDV 78
++++KLTVQ E VI++Q+ V
Sbjct: 80 AQLESRELLAICLRRLKGLNNVRLIDASFLWTEPHSMRLRVKLTVQGEAFNNVILQQTFV 139
Query: 79 VMSRNITCVNLVPGFMQTGPDH-WDAAVQL--------------ELIQKHDAPARATKIK 123
V + P ++ H W+ +VQ+ +LI KH+A A IK
Sbjct: 140 V--EFVVNAMQCPDCAKSYTAHTWNTSVQIRQKVSHKRTFLYLEQLILKHNAHADTIAIK 197
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++F+++ ++HA++ ++F+ VP + + ++L++ + S K K+T SVEI+ I
Sbjct: 198 ETKDGLDFYYAKQNHAMRMIDFLRGCVPIKYKKSERLITEDSHSGTAKYKFTYSVEIAPI 257
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A ++GN+ FV+C+KV N I LDP T++ L YWR+PF +L
Sbjct: 258 CKDDLVVLPKGFAKSMGNISRFVLCSKVANLIRFLDPLTMQTADLPGSVYWRAPFNSLSD 317
Query: 233 SRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIG 273
QLVE++VLDV+ + ND R+HLG +L GD +G
Sbjct: 318 MSQLVEFMVLDVEPTGEQRGKYMMADVTVARSSDMGVNDQEYYVRSHLGAILHPGDSVLG 377
Query: 274 YDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCG 333
Y L +N N ++ + PD + +KK YK N+R R ++ + E+ G + G
Sbjct: 378 YFLANSNFNSALYDSLDTENLPDVVLVKKYYKRSNKRXRRNWKLKRMAREKEEIGGDRSG 437
Query: 334 -------ADREKVNNEYEEFLRDL------------------------MASVTDKE--DV 360
+ EK +YE FL DL A +D E D
Sbjct: 438 RXSKTEQQEEEKAERDYEIFLEDLEEDKELRQSVNMYKANDTTNAXXSSAPXSDSEDSDA 497
Query: 361 PSVPLDYLLADLDS 374
P V +D LL +LD+
Sbjct: 498 PEVNVDELLDELDN 511
>gi|358384730|gb|EHK22327.1| hypothetical protein TRIVIDRAFT_84129 [Trichoderma virens Gv29-8]
Length = 515
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 143/496 (28%), Positives = 212/496 (42%), Gaps = 136/496 (27%)
Query: 9 AVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------- 55
A T+ C CG I + C C+K DI++ +Q+ A I C
Sbjct: 18 ATSATILCHNCGAPIDGTTATGAACYDCIKLTNDISQGIQREATIQQCRDCERWLLPPSS 77
Query: 56 ----------------------------------------KIKLKLTVQKEVLEGVIVEQ 75
++K+KLTVQ V +GV+++Q
Sbjct: 78 WIAAMPESRELLALCLKKLRGLNKVRIVDASFIWTEPHSRRVKVKLTVQDSVQQGVLLQQ 137
Query: 76 SDVVMSRNIT--CVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARA 119
S V+ T C F P+HW A VQ+ +LI KH A
Sbjct: 138 SFEVVYVVTTQQCPECQKSFT---PNHWRACVQVRQKVLHKRTFHFLEQLILKHGAHRET 194
Query: 120 TKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVE 179
IK+ GI+FFFS R+ A KFV+F+ VVP + R ++L+S T + K+T S E
Sbjct: 195 INIKEAKDGIDFFFSVRNQAEKFVDFLNSVVPVKVRSSQELISMDTHTSKKSYKFTFSAE 254
Query: 180 ISAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFK 228
+ + +L GN+ P V+C K+ ++ L+DP TL+ +++ YWR+PF
Sbjct: 255 LVPVCRDDLVALPIKLAKQSGNISPLVLCHKIGTAVYLMDPQTLQTAEVNSSVYWRAPFT 314
Query: 229 ALHTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGD 269
AL + +LVE++++D++ T ND TRTHLG+LL GD
Sbjct: 315 ALADAMELVEFVIMDIEPTHTRKGKWVLAEATVARASDLGVNDKTFFTRTHLGNLLQPGD 374
Query: 270 YAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE 324
A+GY L N N+ IE N S PD + +KK Y + + + R ++ E
Sbjct: 375 SAMGYMLSGTNFNNPEFDAIEESNTYSSTVPDVVLVKKHYPNRRRNRRRNWKLKRMDKDE 434
Query: 325 MEVDGSKCGADREKVNNEYEEFLRDL-------------------------MASVTDKED 359
E+ K AD+E+++ EYE FLRD+ +A D ED
Sbjct: 435 GELLPKK--ADQERMDKEYEMFLRDVEEDEELRAALALYKNPKKANVDEMSIAETEDDED 492
Query: 360 --VPSVPLDYLLADLD 373
VP V +D LL D D
Sbjct: 493 DGVPGVNMDELLDDFD 508
>gi|400601862|gb|EJP69487.1| NMD3 family protein [Beauveria bassiana ARSEF 2860]
Length = 514
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 201/444 (45%), Gaps = 107/444 (24%)
Query: 10 VRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------ 55
V T+ CC CG I ++A +C C+K +DI++ +Q+ A I C
Sbjct: 19 VGATILCCNCGAPIDGTTSAGALCYDCVKLTIDISQGVQREATINFCRDCNRWLLPPSSW 78
Query: 56 ---------------------------------------KIKLKLTVQKEVLEGVIVEQS 76
+IK+KLT+Q EV +G++++QS
Sbjct: 79 VVAAPESRELLALCLKKLRGLNKVRIVDASFVWTEPHSRRIKVKLTIQDEVQDGIMLQQS 138
Query: 77 DVVMSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATK 121
V+ I P ++ + W A VQ+ +LI KH A
Sbjct: 139 FEVVY--IVATQQCPECAKSYTANVWRACVQVRQKVLHKRTFLFLEQLIMKHGAHRDTLN 196
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+ GI+FFFS ++ A KF++F+ VVP + ++L+S T + K+T S E+
Sbjct: 197 IKEAKDGIDFFFSQKNQAEKFIDFLNSVVPVTVKTSQELISHDTHTAKTSYKFTYSAELV 256
Query: 182 AISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I +L GN+ P V+C K+ SI L+DP TL+ + YWR+PF +L
Sbjct: 257 PICKDDLVAMPIRLAKQAGNITPLVLCHKIGTSIYLMDPQTLQTADISCPIYWRAPFTSL 316
Query: 231 HTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILGDYA 271
S LVE+IV+D+++ NDT TRTHLG LL GD
Sbjct: 317 ADSHSLVEFIVMDIELTGKTNGKWRLGEVTVARAVDLGANDTTYFTRTHLGGLLQAGDSV 376
Query: 272 IGYDLHEANQNDIELE-----NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME 326
+GY L +N N+ E E N S + PD + +KK Y + + K R ++ E E
Sbjct: 377 MGYMLTGSNYNNAEWEAMEESNVYSSMLPDVVLVKKHYPNRKKNKKRNWKLRRMAKDEGE 436
Query: 327 VDGSKCGADREKVNNEYEEFLRDL 350
+ K AD+E+++ EYE+FLRD+
Sbjct: 437 LLPRK--ADQERMDREYEQFLRDV 458
>gi|449551392|gb|EMD42356.1| hypothetical protein CERSUDRAFT_148132 [Ceriporiopsis subvermispora
B]
Length = 554
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 136/463 (29%), Positives = 200/463 (43%), Gaps = 134/463 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+CV CL++ VDITE + K A+++ C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNSVDITEGIPKQASVSFCRNCDRFLSPPSSWTIARPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQ-----SD 77
++++ LT+QKEVL I+EQ
Sbjct: 72 SQELLAICLKKLKGLSKVRLTEAHFIWTEPHSKRLRVSLTIQKEVLTSTILEQIFEIEYL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C L + W A VQ+ +LI KH A +K
Sbjct: 132 VQHGQCPDCAKLA------AKNTWKALVQVRQKVPHKRTFLFLEQLILKHGAQKDTISVK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++FF+S RSHA+K VEF+G VVP +S+ +QL+S + KYT SVEI +
Sbjct: 186 EVRDGLDFFYSQRSHALKMVEFLGSVVPIRSKASEQLLSTDIHTSTANFKYTYSVEIIPV 245
Query: 184 SAHNLGNLGP-----------FVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
+L L P +C++V NS+ +LDP TL+ + + YWR+PF++L +
Sbjct: 246 CKDDLVCLPPKLARSSASINQLALCSRVGNSLHILDPATLQSAEISSAVYWRTPFESLAS 305
Query: 233 SRQLVEYIVLDVKVAST------------------------ENDT---------ILSTRT 259
LVE+ VLDV+ T ++D I TRT
Sbjct: 306 VPDLVEFTVLDVEPTGTVRGKWVLADAQVARAGAFRSNGGGDDDAMDEDGVESAIFHTRT 365
Query: 260 HLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
HLG +L GD +GY L AN N + S PD + ++K+Y N+RK K +
Sbjct: 366 HLGGILQPGDAVMGYYLTNANFNSDDFAKLPSHRIPDIVLVRKAY--PNRRKKNKTRAWR 423
Query: 320 LKPLEME------------VDGSKCGADREKVNNEYEEFLRDL 350
LK + E V G G D+ KV +YE FLR+L
Sbjct: 424 LKSIAKEEGEEGEASNARGVVGRMGGRDKRKVEEDYELFLREL 466
>gi|324508962|gb|ADY43779.1| 60S ribosomal export protein NMD3 [Ascaris suum]
Length = 504
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 131/446 (29%), Positives = 201/446 (45%), Gaps = 119/446 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG ++ NA+NMCV C++S+VDITE + K +T C
Sbjct: 14 IICCECGASIEPNAANMCVACIRSKVDITEGIPKQCQLTSCKFCGRFLMPPNGWMHAQPE 73
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
+IK+KLT+QKE+L G I++Q+ VV
Sbjct: 74 SKELLSLALKKLKPAMTKVRLTDASFIWTEPHSKRIKVKLTIQKEILSGAILQQTFVVEF 133
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ +N C + D W A VQ+ +L+ KH A T +K +
Sbjct: 134 VIQNQMCEDC---RRVEAKDFWRACVQVRQRCDFKKTLFYLEQLVLKHAAHVNTTGVKPV 190
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
GI+FF++ + A K V+F+ V+P + R+ ++LV+ ++ K+T V+I I
Sbjct: 191 ASGIDFFYAKQQDARKLVDFLLSVLPCKYRYAQELVTHDPRNNTYDYKHTFCVDIVPICK 250
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ V+C +V+N I L+DP TL+ + A QYWR PF+AL S+
Sbjct: 251 DSVICLPKRIAQSLGNMSQLVVCLRVSNVITLIDPSTLQMADVTASQYWRDPFEALCQSK 310
Query: 235 QLVEYIVLDV------------------------------KVASTENDTILSTRTHLGHL 264
QL E+ VLDV +V T+ RTHLGHL
Sbjct: 311 QLTEFYVLDVEEIDDLKRSAGHGHVSTKHLLADVWVVRSNQVGENGAQTV-CCRTHLGHL 369
Query: 265 LILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE 324
L GD +G+D+ +N N L+ K+ D I ++K + +++ R KLK L
Sbjct: 370 LKPGDLVLGFDILNSNVNSRVLDEMKADKVADVILVRKVFDRALRQRRRI---WKLKRL- 425
Query: 325 MEVDGSKCGADREKVNNEYEEFLRDL 350
+GS + V NE+E F+ DL
Sbjct: 426 -LANGSIVN-ETASVENEFEAFMEDL 449
>gi|82186247|sp|Q6P2Z6.1|NMD3_XENTR RecName: Full=60S ribosomal export protein NMD3
gi|39849988|gb|AAH64238.1| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
gi|51703739|gb|AAH81303.1| 60S ribosomal export protein NMD3 [Xenopus (Silurana) tropicalis]
Length = 504
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 135/488 (27%), Positives = 210/488 (43%), Gaps = 136/488 (27%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
+ CC+CGI + N +NMCV+CL+ +VDI+E + K ++ C
Sbjct: 14 NILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCAL 73
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 74 ESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVD 133
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ ++ C + D W A VQ+ + I KH ++K+
Sbjct: 134 YIVQSQMCDDC---HRVEAKDFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKE 190
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+ G++F+++ + HA K VEF+ VP + + ++L+S + K T SVEI +
Sbjct: 191 IHDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVC 250
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +LGN+ IC +VT++I L+DP TL+ +D + YWRSPF +L
Sbjct: 251 KDNLVCLSPKLAQSLGNMNQICICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHP 310
Query: 234 RQLVEYIVLDVKVASTE----------NDTILST-----------------RTHLGHLLI 266
+QL E+IV+D + N IL+ RTHLGHLL
Sbjct: 311 KQLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQQYHCRTHLGHLLN 370
Query: 267 LGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME 326
GD +G+DL N ND + PD + IKKSY +++ R KLK +E +
Sbjct: 371 PGDLVLGFDLANCNLNDEFINKMNPHHIPDVVLIKKSYDRTKRQRRRN---WKLKEIERD 427
Query: 327 VDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDY 367
+G +R +Y++FL DL + S TD+E P + L
Sbjct: 428 REGMDTDDER-----QYQDFLEDLEEDEVIRKNVNIYKNANLPVESDTDEEGAPRISLAE 482
Query: 368 LLADLDSS 375
+L DL S
Sbjct: 483 MLEDLHIS 490
>gi|378727772|gb|EHY54231.1| nonsense-mediated mRNA decay protein 3 [Exophiala dermatitidis
NIH/UT8656]
Length = 515
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 133/492 (27%), Positives = 213/492 (43%), Gaps = 136/492 (27%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I +A +C C+K +D++E +Q+ + C
Sbjct: 21 TILCCNCGAPIDGTVSAGALCYDCIKLTIDVSEGIQREGVLHTCRDCERWLSPPSQWVTA 80
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+K+TVQ+E EG I++Q+ V
Sbjct: 81 APESRELLALCLRKLRGLNKVRIIDASFLWTEPHSRRIKVKITVQQEAYEGTILQQTFEV 140
Query: 80 --MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
+ N C F P+ W A+VQ+ +L+ KH A IK
Sbjct: 141 EYVVANQQCPECAKSFT---PNTWRASVQVRQKVPHKRTFLYLEQLVLKHQAHKDTINIK 197
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++F+F+ R+HA KFV+F+ P + + ++L+S + K+T S E+ I
Sbjct: 198 EVKDGLDFYFAQRNHAEKFVDFLTSSTPVRVKKSQELISMDVHTSTKSYKFTYSCELLPI 257
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A ++GN+ P +C +V S+ LLDP TL+ L ++ YWR+PFK+L
Sbjct: 258 CKDDLVALPIKLAKSIGNITPLAVCYRVGTSVNLLDPTTLQTADLSSNIYWRAPFKSLAD 317
Query: 233 SRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIG 273
++LVE++VLD++ T+ ND RTHLG +L GD +G
Sbjct: 318 VQELVEFVVLDIEPLGTQNGRFFGAEATVARASDLGVNDKTYYVRTHLGGILHAGDSVLG 377
Query: 274 YDLHEANQNDIELENYK-----SLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
Y L N N+ + E + S PD + +KK Y K + K+R +L+ E E+
Sbjct: 378 YHLDRTNFNNTQFEELEQSSQFSSTIPDVVLVKKFYARKKKSKNRNWRLKRLEKDEGELL 437
Query: 329 GSKCGADREKVNNEYEEFLRDL--------------------------MASVTDKED-VP 361
K D+E+++ +YE FLRD+ MA+ ED VP
Sbjct: 438 PKK--QDQERMDADYEMFLRDVEEDEELRQTLALYKAQQQKKDADEMSMATGESSEDEVP 495
Query: 362 SVPLDYLLADLD 373
+ +D LL D +
Sbjct: 496 QINMDELLDDFE 507
>gi|169775831|ref|XP_001822382.1| 60S ribosomal export protein NMD3 [Aspergillus oryzae RIB40]
gi|83771117|dbj|BAE61249.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871083|gb|EIT80249.1| NMD protein affecting ribosome stability and mRNA decay
[Aspergillus oryzae 3.042]
Length = 520
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 131/451 (29%), Positives = 201/451 (44%), Gaps = 113/451 (25%)
Query: 10 VRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------ 55
+ T+ CC CG I + A +C C++S VDI+E +Q+ A + C
Sbjct: 17 IAATILCCNCGAPIDGTTAAGALCQDCVRSTVDISEGIQREAVVHTCRDCERWLLPPNSW 76
Query: 56 ---------------------------------------KIKLKLTVQKEVLEGVIVEQS 76
+IK+K+T+Q+EV G I++Q+
Sbjct: 77 VSAALESKELLALCLRKLRGLTKVRIIDASFIWTEPHSRRIKVKITIQQEVAAGTILQQA 136
Query: 77 DVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARAT 120
VV + C + + F P W A+VQ+ +LI +H A
Sbjct: 137 FVVEYVVHYQQCSDCLRSF---SPHTWVASVQVRQKVPHKRTFLYLEQLILRHRAHQETN 193
Query: 121 KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI 180
IK+ G++F+FS RSHA K VEF+ VVP + + +L+S + K++ SVEI
Sbjct: 194 NIKEAKDGLDFYFSQRSHAEKMVEFLSSVVPVKVKKASELISMDIHTSTKSYKFSYSVEI 253
Query: 181 SAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
I A ++GN+ P +C ++ +I LLDP TL+ + YWRSPFK
Sbjct: 254 VPICKDDLVAIPIKLARSIGNISPLTLCYRIGTTIQLLDPNTLQTAEVPGATYWRSPFKN 313
Query: 230 LHTSRQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHLLILGDY 270
L +LVE+IV+D++ VA ND TRTHLG +L +GD
Sbjct: 314 LADVTELVEFIVMDIEPVGRSNGRFHLAEATVARASDLGSNDQTYFTRTHLGGILHVGDS 373
Query: 271 AIGYDL-----HEANQNDIELENYKSLVPPDTIKIKKSY-----KEKNQRKHRKPNPPKL 320
+GY L ++ N + IE + S PD + +KK Y K +N R R +
Sbjct: 374 VLGYHLTGSMFNDPNYDAIEASSQYSSTIPDVVLVKKHYTRKKNKSRNWRVKRMAREHEE 433
Query: 321 KPLEMEVDGS-KCGADREKVNNEYEEFLRDL 350
+ L+ GS K +RE++ ++E FLRD+
Sbjct: 434 EALQASTGGSRKQEQERERLEADFEMFLRDV 464
>gi|432890080|ref|XP_004075417.1| PREDICTED: 60S ribosomal export protein NMD3-like [Oryzias latipes]
Length = 504
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 211/501 (42%), Gaps = 139/501 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + N +NMCV CL+++VDI+E + K + C
Sbjct: 15 ILCCTCGVPIPPNPANMCVACLRTQVDISEGIPKQVTVHFCKQCERYLQPPGTWMQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
+IK+KLTVQKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKLKSSMTRVRLIDAGFLWTEPHSKRIKMKLTVQKEVMNGAILQQVFVVEF 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A VQ+ +LI KH A IK++
Sbjct: 135 VIQSQMCDDC---HRVEAKDFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHLNALNIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
GI+F++ + HA K V+F+ VP + + ++L+S S K T SVEI +
Sbjct: 192 HEGIDFYYGSKQHAQKMVDFLQCTVPCRCKTSQRLISHDIHSNTYNYKSTFSVEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+G +C +VT++I L+DP TL+ +D + YWR PF +L R
Sbjct: 252 DNVVCLSPRLAQSLGNMGQVCVCVRVTSTIHLIDPRTLQIAEVDGNTYWRYPFNSLCNPR 311
Query: 235 QLVEYIVLDVKV-------------------------ASTENDTI--LSTRTHLGHLLIL 267
QL E+IV+D+ + ++E DT RT LGHLL +
Sbjct: 312 QLEEFIVMDMDIIRDQKLGAGAGVRSNKHTLAEVWVQKTSEMDTSQQYHCRTFLGHLLNI 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +GYD +N ND L PD + IKKSY + + R K EM
Sbjct: 372 GDLVLGYDFANSNINDEFLNKMNPQHVPDVVLIKKSYDRSRRVRRR-----NWKLQEMSR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL--------------------MASVTDKEDVPSVPLDY 367
D D E+ +Y++FL DL + S TD + P + L
Sbjct: 427 DREGTDTDDER---QYQDFLEDLEEDEALRRNVNIYRDVAKIPVESDTDDDGAPRISLVE 483
Query: 368 LLADLDSSDKE--EGDDSMIE 386
+L +L SD EGD M +
Sbjct: 484 MLEELSLSDATGGEGDGMMTD 504
>gi|401884164|gb|EJT48336.1| nonsense-mediated mRNA decay protein 3, putative [Trichosporon
asahii var. asahii CBS 2479]
gi|406695999|gb|EKC99296.1| nonsense-mediated mRNA decay protein 3, putative [Trichosporon
asahii var. asahii CBS 8904]
Length = 560
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 197/457 (43%), Gaps = 128/457 (28%)
Query: 14 VSCCKCGITMVS-NASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
+ C CG + S N S +CV CL++ VDIT+ + K + + C
Sbjct: 14 ILCADCGTVISSANGSGLCVGCLRNSVDITDGIPKESVVNFCKGCERFLSPPNTWVACQP 73
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVM 80
+IKLK+T+QKEVL +++Q+ V+
Sbjct: 74 ESRELLAICLKKIAKPLLKVRLIDAQFIWTEPHSRRIKLKITIQKEVLANTVLQQTFVLT 133
Query: 81 -----SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
+ C L + W A+VQ+ +LI KH+A T
Sbjct: 134 LVVQTGQCPACTRL------AAKNTWKASVQVRQKVTHKRTFLFLEQLILKHNAHKDCTN 187
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
I + G++FF++ R++A+K VEF+ VVP + + +QL+S+ T + K+T SVEI
Sbjct: 188 INEKRDGLDFFYTERNNAIKMVEFLASVVPVRVKGSEQLISQDTHNGTANYKFTYSVEIV 247
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A GN+ IC++V N++ LLDP TL+ + A YWR PF++L
Sbjct: 248 PICKDDLVCIPKNLARQWGNISQLTICSRVGNTLHLLDPLTLQQTDVTAPVYWRQPFESL 307
Query: 231 HTSRQLVEYIVLDVKVASTE---------------------------NDTILSTRTHLGH 263
+ LVE++VLD++ + +D I RTHLG
Sbjct: 308 AQTSDLVEFVVLDIEPTGVQRGRWVLADAQITRASGSGQAADADGMGDDGIYHVRTHLGA 367
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
+L GD +GYDL N N+ E P I +KK+Y N+RK +P KLK +
Sbjct: 368 ILQPGDTVLGYDLTHTNFNNDAFEGIDPHRIPHVILVKKTY--PNRRKKNRPRNWKLKSI 425
Query: 324 EMEVDGSKC----------GADREKVNNEYEEFLRDL 350
E + G D++ V +YE FLRDL
Sbjct: 426 AKEAEEDTTVGRGALGRRGGVDQKNVERDYELFLRDL 462
>gi|449277297|gb|EMC85532.1| 60S ribosomal export protein NMD3, partial [Columba livia]
Length = 489
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/493 (26%), Positives = 211/493 (42%), Gaps = 136/493 (27%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------------- 55
CC+CG+ + N +NMCV CL+++VDITE + K + + C
Sbjct: 2 CCQCGVAIPPNPANMCVGCLRAQVDITEGIPKQSTLHFCKQCQRYLQPPGTWIQCTLESR 61
Query: 56 --------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--MS 81
++KLKLTVQKEV+ G +++Q VV +
Sbjct: 62 ELLALCLKKIKASLSKVRLIDAGFIWTEPHSKRLKLKLTVQKEVINGAVLQQVFVVEYLV 121
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
++ C + D W A VQ+ +LI KH +IK++
Sbjct: 122 QSQMCEDC---HRIEAKDFWKAVVQVRQKTVHKKTFYYLEQLILKHRLHQNTLRIKEIHD 178
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++F++S + A K V+F+ VP++S+ ++L+S S K T SVEI I
Sbjct: 179 GLDFYYSSKQQAQKMVDFLQCTVPSRSKSSQRLISHDIHSNVYNYKSTFSVEIVPICKDN 238
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A +LGN+ +C +VT+++ L+DP TL+ +D + YWR PF +L +QL
Sbjct: 239 VVCLSPKLAQSLGNMSQICVCIRVTSTVHLIDPRTLQIAEIDGNTYWRHPFNSLFHPKQL 298
Query: 237 VEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLILGD 269
E+I++D+ K + + D THLGH+L GD
Sbjct: 299 EEFIIMDINRVQEKKKVAGAGARSNKHTLAEAWVRKTSELDTDHQYFCCTHLGHILNPGD 358
Query: 270 YAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
+G+DL N ND PD + IKKSY +++ R KL+ LE + +G
Sbjct: 359 LVLGFDLANCNLNDEFANKMNPHEIPDVVLIKKSYDRTKRQRRRN---WKLRELERDREG 415
Query: 330 SKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYLLA 370
+ +R +Y++FL DL + S TD + P + L +L
Sbjct: 416 ADTDDER-----QYQDFLEDLEEDEAIRKNVNIYRNADIPVESDTDDDGAPRISLAEMLE 470
Query: 371 DLDSSDKEEGDDS 383
DL S+ G +
Sbjct: 471 DLHISEDATGGEG 483
>gi|50302583|ref|XP_451227.1| 60S ribosomal export protein NMD3 [Kluyveromyces lactis NRRL
Y-1140]
gi|49640358|emb|CAH02815.1| KLLA0A05159p [Kluyveromyces lactis]
Length = 514
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 130/444 (29%), Positives = 202/444 (45%), Gaps = 112/444 (25%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S+ MC C+K VDITE + + AN++ C
Sbjct: 17 TVLCCSCGVPMDGSSGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPSQWIRAS 76
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++KLTVQ E + I++Q+
Sbjct: 77 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIIQQTFEVE 136
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 137 YVVIA--MQCPDCARSYT---TNTWRANVQIRQKVPHKRTFLYLEQLILKHNAHVDTISI 191
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
+ G++FF+S ++HA K ++F+ VVP + + ++L+S+ + + K+T SVEI
Sbjct: 192 SEAKDGLDFFYSQKNHAAKMLDFLNAVVPIKCKKSEELISQDIHTGSSTYKFTFSVEIVP 251
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I A +LGN+ FVIC+KV+NS+ LDP TL+ C L A YWR PF AL
Sbjct: 252 ICRDDLVVLPKKLAKSLGNISQFVICSKVSNSLQFLDPTTLQTCDLTAPMYWREPFSALA 311
Query: 232 TSRQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHLLILGDYAI 272
QLVE+I+LDV+ VA + ND + RTHLG ++ GD +
Sbjct: 312 EVSQLVEFIILDVEPTGQVRNKWVLADVTVARSSDLGSNDQVYYVRTHLGGIIHPGDSVM 371
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKC 332
GY + +N N + PD + IKK Y+ K +K+RK ++ +++ S+
Sbjct: 372 GYFIANSNYNSELFDGLNIDYVPDIVLIKKLYQRKT-KKNRKWKLKRMAKEHKDIEASQD 430
Query: 333 GADR------EKVNNEYEEFLRDL 350
R E+ +YE FL++L
Sbjct: 431 YTSRQQKQEMERAERDYEIFLQEL 454
>gi|149048326|gb|EDM00902.1| rCG62699, isoform CRA_a [Rattus norvegicus]
Length = 525
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 136/495 (27%), Positives = 213/495 (43%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 37 ILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALE 96
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 97 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 156
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 157 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 213
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 214 HDGLDFYYSSKQHAQKMVEFLQGTVPCRYKSSQRLISQDIHSNTYNYKSTFSVEIVPICK 273
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ IC +VT++I L+DP TL+ +D + +W PF +L +
Sbjct: 274 DNVVCLSPKLAQSLGNMNQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 333
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + + D RTHLGHLL
Sbjct: 334 QLEEFIVIECSIVRDLKRNAGAGVISKKHTLGEVWIQKTSEMDTDKQYFCRTHLGHLLNP 393
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + KS PD + IKKSY +++ R KLK E+
Sbjct: 394 GDLVLGFDLANCNLNDEHVNKMKSDRVPDVVLIKKSYDRTKRQRRRN---WKLK--ELAR 448
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 449 DREDMDTDDER---QYQDFLEDLEEDETIRKNVNIYRDSTVPVESDTDDEGAPRISLAEM 505
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 506 LEDLRISQDATGEEG 520
>gi|428177639|gb|EKX46518.1| hypothetical protein GUITHDRAFT_94322, partial [Guillardia theta
CCMP2712]
Length = 460
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 205/453 (45%), Gaps = 107/453 (23%)
Query: 19 CGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK------------- 56
CG+ MV N S+MC C+++ VDITE + K + C PK
Sbjct: 2 CGVPMVWNPSSMCPNCIRTRVDITEGIPKSVPLQRCRACGRYLNPPKAWTVCEPESKELL 61
Query: 57 -----------------------------IKLKLTVQKEVLEGVIVEQSDVV--MSRNIT 85
+KLKLTVQKEV GVI++Q VV + N
Sbjct: 62 QICLKRVKGLNKVKLIDASFIWTEAHSKRLKLKLTVQKEVYSGVILQQVFVVEVVIHNFQ 121
Query: 86 CVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEF 131
C N M + W AAVQ+ +LI K+ A + +K++ GI+F
Sbjct: 122 CTNC---HMVAAQNTWRAAVQVRQKVDHKRTFYLLEQLILKYKAHQQTVSVKEVPDGIDF 178
Query: 132 FFSGRSHAVKFVEFVGEVVPAQSRH-EKQLVSRGTKSRNCKCKYTCSVEI------SAIS 184
+F R HA+KF +FV VVP + + ++L+S + KYT SVEI I
Sbjct: 179 YFLHRHHALKFQDFVNTVVPCRMKSASEKLISEDFNNNKINAKYTFSVEILPVCKDDIIC 238
Query: 185 AH-----NLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEY 239
H LGN+GP V+C VT S+ LLDP T++ L + ++R P L +++Q EY
Sbjct: 239 LHPKQHDTLGNVGPLVLCIGVTQSVKLLDPLTMKRAELRPEIFYRHPRGVLMSTKQATEY 298
Query: 240 IVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEAN 280
++DV+ +A T ND I + THLG++L GD +GYDL A
Sbjct: 299 TIIDVEPTGLVNGKMRQAELTLARTRDLGSNDQIFHSLTHLGNVLQAGDTVLGYDLTAAV 358
Query: 281 QNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVN 340
N+ E + + L PD + IKK Y E +R+ KL+ + E + + +
Sbjct: 359 FNEAETKEWPKLQLPDVVVIKKLYPEARRRRRLW----KLRSIIKEEEEGTYKSLHKMAE 414
Query: 341 NEYEEFLRDLM--ASVTDKEDVPSVPLDYLLAD 371
+YEEFL+D+ A V + +V P + + D
Sbjct: 415 QDYEEFLQDVETDAEVRQRVNVYKDPSKFRITD 447
>gi|392580176|gb|EIW73303.1| hypothetical protein TREMEDRAFT_59468 [Tremella mesenterica DSM
1558]
Length = 576
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/479 (29%), Positives = 211/479 (44%), Gaps = 147/479 (30%)
Query: 4 AAGIFAVRKTVSCCKCGITMVS-NASNMCVTCLKSEVDITESLQKHANIT---------- 52
AAG+ + + C CG + S N + +CV CLK+ VDITE + K A +
Sbjct: 10 AAGL---QSFILCADCGTPISSANGAGLCVGCLKNTVDITEDIPKEAALNFCRGCERFLS 66
Query: 53 -------------------------PCPKIKL-----------------KLTVQKEVLEG 70
P K++L K+T+QKEVL
Sbjct: 67 PPQTWIHAQPESRELLAICLKKIARPLMKVRLVDASFVWTEPHSRRVKVKITIQKEVLAN 126
Query: 71 VIVEQSDVVMSRNI------TCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
++ Q D V++ + +C L + W A VQ+ +LI
Sbjct: 127 TVL-QDDFVLTLVVHSGQCPSCTRLA------AKNTWRATVQVRQKVTHKRTFLWLEQLI 179
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNC 170
KH+A I + G++FF+S R+ A+K VEF+ VVP +S+ +QL+S T S
Sbjct: 180 LKHNAHKDTVNISEKRDGLDFFYSERNDAIKMVEFLAGVVPVRSKGSEQLISSDTHSNTS 239
Query: 171 KCKYTCSVEISAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDA 219
K+T SVEI + +L GN+ P +C++V N+I LLDP TL+ + +
Sbjct: 240 NYKFTYSVEIVPVCKDDLVCLPRTLAKAWGNIRPLTLCSRVGNTIHLLDPSTLQQTDVSS 299
Query: 220 DQYWRSPFKALHTSRQLVEYIVLDVKV-------------------------ASTENDT- 253
YWR PF +L T LVE++VLDV+ AS+++D
Sbjct: 300 PVYWRQPFDSLATVSDLVEFVVLDVEYTNITRGKYVLADVQVMRSSTGSTTKASSDDDEE 359
Query: 254 -----ILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSL-----VPPDTIKIKKS 303
I TRTHLG ++ GD +GY L AN N+ E Y++L PD I +KK+
Sbjct: 360 MGHDGIFYTRTHLGGIIQPGDTVLGYHLTNANFNN---EAYEALEQSREALPDVILVKKT 416
Query: 304 YKEKNQRKHRKPNPPKLKPLEMEVDGSKCG------------ADREKVNNEYEEFLRDL 350
Y ++RK KP KL+ + E + + G D++ V +YE FLRDL
Sbjct: 417 Y--PSRRKKSKPRGWKLRSIAKEAEDAGDGVVGRGALGRRGGVDQKNVERDYELFLRDL 473
>gi|195477750|ref|XP_002100295.1| GE16971 [Drosophila yakuba]
gi|194187819|gb|EDX01403.1| GE16971 [Drosophila yakuba]
Length = 521
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 144/509 (28%), Positives = 216/509 (42%), Gaps = 150/509 (29%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------- 54
A + CC+CG+ + N +NMCVTCL++ VDITE++ K A + C
Sbjct: 20 ASNAVILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWI 79
Query: 55 -------------------------------------PKIKLKLTVQKEVLEGVIVEQSD 77
+IK+KLTV E+ G +++Q
Sbjct: 80 QAALESRELLAICLKKLKGLKDVKLVDAGFIWTEQHSKRIKVKLTVHGEITGGTVLQQVF 139
Query: 78 VV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV +N C + D W VQ+ +LI KH A
Sbjct: 140 VVEFTVQNQMCNDC---HRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLG 196
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK G++FF++ +HA + V+F+ +VP + K+L+S S N KY SVEI+
Sbjct: 197 IKPEHGGLDFFYANDNHARRMVDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIA 256
Query: 182 AISA-----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+S H LGNL P V+ +V++SI L+DP T + L + Y+R+PF+A+
Sbjct: 257 PVSKDSAVCLSKKLRHQLGNLSPLVLVNRVSSSIHLIDPLTAQIAELTSQVYFRAPFEAI 316
Query: 231 HTSRQLVEYIVLDVKVASTE------------------------------NDTILSTRTH 260
+QLVEY+V+D+ V + ND + TR+H
Sbjct: 317 CNPKQLVEYVVMDIDVIMEKDRKTYPGQGQVSFKHALCDIWVVRASELGINDNPIHTRSH 376
Query: 261 LGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKL 320
LGHLL +GD +GY+ EAN ND+E + + PD I + RKP+
Sbjct: 377 LGHLLKVGDSVMGYNTGEANINDLEFDKLSTDEIPDVILV------------RKPDSAS- 423
Query: 321 KPLEMEVDGSK---CGADREKVNNEYEEFLRDL-----------MASVTDKE-------- 358
PL E + K A E+ +Y EFL DL + T+K
Sbjct: 424 APLVSEDERVKHLAAEATDERSKYDYHEFLDDLEENEDIRGQVNIYRDTNKTIPIEVQAA 483
Query: 359 --DVPSVPLDYLLAD--LDSSDKEEGDDS 383
DVP + L+ +L D L+ +D E G++
Sbjct: 484 GGDVPQITLEEMLEDMTLECADDEMGEEG 512
>gi|157818501|ref|NP_001101152.1| 60S ribosomal export protein NMD3 [Rattus norvegicus]
gi|149048327|gb|EDM00903.1| rCG62699, isoform CRA_b [Rattus norvegicus]
gi|171846766|gb|AAI61998.1| Nmd3 protein [Rattus norvegicus]
Length = 503
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/495 (27%), Positives = 213/495 (43%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQGTVPCRYKSSQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ IC +VT++I L+DP TL+ +D + +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + + D RTHLGHLL
Sbjct: 312 QLEEFIVIECSIVRDLKRNAGAGVISKKHTLGEVWIQKTSEMDTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + KS PD + IKKSY +++ R KLK E+
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMKSDRVPDVVLIKKSYDRTKRQRRRN---WKLK--ELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 427 DREDMDTDDER---QYQDFLEDLEEDETIRKNVNIYRDSTVPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLRISQDATGEEG 498
>gi|302675617|ref|XP_003027492.1| 60S ribosomal export protein NMD3 [Schizophyllum commune H4-8]
gi|300101179|gb|EFI92589.1| hypothetical protein SCHCODRAFT_70539 [Schizophyllum commune H4-8]
Length = 558
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/470 (28%), Positives = 203/470 (43%), Gaps = 141/470 (30%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG +V N++N+CV CL++ VDITE + K A++ C
Sbjct: 12 VLCADCGTPIVPNSANLCVACLRNTVDITEGIPKQASVAFCRNCERFLNPPQNWTIARPE 71
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSD----- 77
++++ +T+QKEVL I+EQ+
Sbjct: 72 SSELLSICLRKLKGLNKVRLTDAHFIWTEPHSKRLRVSITIQKEVLTNTILEQTFEIEYL 131
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C L D W A VQ+ +LI KH+A +K
Sbjct: 132 VQYGQCPDCARLA------AKDTWKALVQVRQKVPHKRTFLYLEQLILKHNAQKDTISVK 185
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++FF+S R+HA+K VEF+ VVP +S+ ++L+S T + K+T SVEI +
Sbjct: 186 EVRDGLDFFYSNRAHALKMVEFLNGVVPIRSKSSERLLSSDTHTNTANFKHTYSVEIVPV 245
Query: 184 -----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +LGNL P +C +V +S+ LLD TL+ + A YWR+PF++L +
Sbjct: 246 CKEDLVCIPQKQARSLGNLNPLALCIRVGSSLQLLDVATLQTADIPAQVYWRAPFESLAS 305
Query: 233 SRQLVEYIVLDVK----------------------------------------VASTEND 252
LVE+ VLDV+ +
Sbjct: 306 VPDLVEFTVLDVEPDYSRAKGRLVPADAQVALSGAFRSKASGGHSSSDMDMDFDDAGSTS 365
Query: 253 TILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKH 312
I TRTHLG +L GD A+GY L AN N + + PD + +KK+Y N+RK
Sbjct: 366 QIFHTRTHLGGILQPGDAALGYFLTSANFNSDDFAALPAERIPDLVLVKKAY--PNRRKK 423
Query: 313 RKPNPPKLKPLEMEV-DGSKCGA-----------DREKVNNEYEEFLRDL 350
+ +L+ + E + + GA D++KV+ +YE FLR+L
Sbjct: 424 NRARNWRLRSIGKEAGEEGETGAGRGVVGRMGGRDQKKVDEDYELFLREL 473
>gi|332374912|gb|AEE62597.1| unknown [Dendroctonus ponderosae]
Length = 500
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 140/491 (28%), Positives = 213/491 (43%), Gaps = 127/491 (25%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------ 54
+V CC+CG+ + +N +NMCV CL+ VDITE + A + C
Sbjct: 15 SVPCCQCGVIIEANPANMCVGCLRVHVDITEGISDQATLYFCRGCERYHQPPSEWIHCAL 74
Query: 55 ---------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV-- 79
+IK+KL + EV+ GV++E+S +V
Sbjct: 75 ESRELLTLCLKRLKGLNRVKLFDASFVWTEPHSKRIKVKLVIHAEVM-GVVLEKSFIVEF 133
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ C + + D W A VQ+ +LI KH AT+IK +
Sbjct: 134 TVNHQMCDDC---HRREAKDFWRALVQVRQRADNKKTFYYLEQLILKHKVHDNATEIKPV 190
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
GI+FFF+ +HA K ++F+ V+P + H K+L+S S K+T +EI IS
Sbjct: 191 HGGIDFFFATEAHAKKMIDFLVTVLPCKYHHSKKLISHDIHSNIYNYKFTYCLEIVPISK 250
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
+LG + P + +VTN+I L+DP + +++ YWRS F ++ +
Sbjct: 251 DSVICLPKKMTQSLGGISPICLVYRVTNTIHLIDPSRGQVAEVNSTHYWRSQFNSICNPK 310
Query: 235 QLVEYIVLDVK---------------------------VASTE---NDTILSTRTHLGHL 264
QLVEYIVLD++ V ++E + TRTHLGH+
Sbjct: 311 QLVEYIVLDIEPIMDKDRKCFPGQGMISTKHVLADVWIVKASELGITTASIHTRTHLGHI 370
Query: 265 LILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE 324
L LGD +GY++ + N ND + PD I +KKS+ ++ ++ RK N KLK L
Sbjct: 371 LKLGDCVLGYNIADTNVNDPHFDKLDKATVPDVILVKKSFDDRESKRMRKRN-WKLKRLA 429
Query: 325 MEVDGSKCGADREKVNNEYEE----------FLRDLMASVTDKEDV----PSVPLDYLLA 370
S G + + ++ EE F L A TD D P + LD +L
Sbjct: 430 DHDVESTDGNEFNEFMDDLEEDPELRRNVNIFKNSLFAVDTDDTDYDPNKPCITLDEMLD 489
Query: 371 DLDSSDKEEGD 381
DL +D E D
Sbjct: 490 DLTVNDVEMTD 500
>gi|367004052|ref|XP_003686759.1| 60S ribosomal export protein NMD3 [Tetrapisispora phaffii CBS 4417]
gi|357525061|emb|CCE64325.1| hypothetical protein TPHA_0H01170 [Tetrapisispora phaffii CBS 4417]
Length = 526
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 138/504 (27%), Positives = 219/504 (43%), Gaps = 139/504 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG + S MC C+K VDITE + + AN++ C
Sbjct: 21 TVLCCNCGTPIDGSQGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPGQWIRAE 80
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 81 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIIQQTFEVE 140
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 141 YIVVAMQCADCARSYT---TNTWRATVQIRQKVAHKRTFLYLEQLILKHNAHIDTISITE 197
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF+S ++HA K ++F+ VVP + + ++L+S+ + + K++ SVEI +
Sbjct: 198 TKDGLDFFYSQKNHAAKMIDFLNSVVPIKCKKSEELISQDVHTGSSTYKFSFSVEIVPVC 257
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +LG++ FV+C+K++NS+ LDP TL+ L A+ YWR+PF L +
Sbjct: 258 RDDLVVLPKKLAKSLGDISQFVLCSKISNSVQFLDPTTLQTADLSANVYWRTPFNTLADA 317
Query: 234 RQLVEYIVLDVK-VASTE------------------NDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV+ + T+ ND TR+HLG + GD +GY
Sbjct: 318 SQLVEFIVLDVEPIGVTKGKKVLADITVARATDLGVNDLTYYTRSHLGAICHAGDTVMGY 377
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N E K PD + +KK Y QRK RK KLK + E ++ S+
Sbjct: 378 YVANSNYNSDLFETLKFEYVPDVVLVKKLY----QRKSRKNRNWKLKRMAKEHKDIEASQ 433
Query: 332 CGADR------EKVNNEYEEFLRDL-----------------------MASVTDKEDVPS 362
+ R E+ +YE FL++L + D P+
Sbjct: 434 DYSSRAQKQDIERAERDYELFLQELEEDQELRQTINLYKSQKQEQEEHEMEEEEDADAPA 493
Query: 363 VPLDYLLADLD--SSDKEEGDDSM 384
+ +D LL +LD + D +GD+ M
Sbjct: 494 IDIDELLDELDEMTLDDNQGDEGM 517
>gi|126133022|ref|XP_001383036.1| 60S ribosomal export protein NMD3 [Scheffersomyces stipitis CBS
6054]
gi|126094861|gb|ABN65007.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 517
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 200/439 (45%), Gaps = 110/439 (25%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S MC C+K VDITE + + AN++ C
Sbjct: 19 TVLCCNCGVPMDGSQGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPQQWIRAE 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++KLTVQ E + IV+Q+
Sbjct: 79 LESRELLALCLRKLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIVQQTFEVE 138
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 139 YVVIA--MQCPDCAKSYT---TNTWKATVQIRQKVPHKRTFLYLEQLILKHNAHVDTVSI 193
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
K+ G++FF+S ++HA K ++F+ V P +++ ++L+S T+S N + K++ SVEI
Sbjct: 194 KEAKDGLDFFYSQKNHAAKMLDFLSAVAPVKAKKSEELISVDTQSGNSQYKFSYSVEIVP 253
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I AH+LGN+ VIC+K+TN++ LDP TL+ L A YWR+PF +L
Sbjct: 254 ICRDDLVVLPKKLAHSLGNISRLVICSKITNAVQFLDPLTLQTADLAASVYWRNPFASLL 313
Query: 232 TSRQLVEYIVLDVK----------VASTE---------NDTILSTRTHLGHLLILGDYAI 272
QLVE++VLDV+ +A E ND RTHLG +L GD +
Sbjct: 314 DVTQLVEFVVLDVEPTGDVRGKNVLADIEVCRAKDMGVNDHTYYIRTHLGAILHPGDSCL 373
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR-KHRKPNPPKLKPLEMEV---- 327
GY L N N + + P+ + IKK Y KN++ K+R+ ++ ++
Sbjct: 374 GYFLTNTNFNSDLWDTLDTDNTPEVVLIKKHYARKNKKNKYRQWKLKRMAKEHSDIVAND 433
Query: 328 DGSKCGADREKVNNEYEEF 346
D + ++E+ +YE F
Sbjct: 434 DSRQARQEQERAERDYEIF 452
>gi|358393763|gb|EHK43164.1| hypothetical protein TRIATDRAFT_301080 [Trichoderma atroviride IMI
206040]
Length = 514
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 199/442 (45%), Gaps = 109/442 (24%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ C CG I + C C+K DIT +Q+ A I C
Sbjct: 22 TILCHNCGTPIDGTTATGATCYDCIKLTNDITNGIQREATIQQCRDCERWMLPPASWIIA 81
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSD-- 77
++K+KLT+Q V GV+++QS
Sbjct: 82 MPESRELLALCLKKLRGLNKVRIVDASFIWTEPHSRRVKVKLTIQDSVQSGVLLQQSFEI 141
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + + C + F P+HW A VQ+ +LI KH A IK
Sbjct: 142 VYVVAHQQCPDCQKSFT---PNHWRACVQVRQKVLHKRTFHFLEQLILKHGAHKETLNIK 198
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ GI+FFFS R+ A KFV+F+ VVP + + ++L+S T + K+T S EI +
Sbjct: 199 EAKDGIDFFFSVRNQAEKFVDFLNSVVPVKVKSAQELISMDTHTSKKSYKFTFSAEIVPV 258
Query: 184 SAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
+L GN+ P V+C K+ ++ L+DP TL+ ++A YWR+PF AL
Sbjct: 259 CRDDLVALPIKMAKQSGNISPLVLCHKIGTAVYLMDPQTLQTAEVNASLYWRAPFTALAD 318
Query: 233 SRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIG 273
+ +LVE+I++D++ +T ND TRTHLG LL GD A+G
Sbjct: 319 AMELVEFIIMDIEPTTTRNGKWLLGEATVARASDLGVNDKTYFTRTHLGGLLQPGDSAMG 378
Query: 274 YDLHEANQND-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
Y L+ +N N+ IE N S + PD + +KK Y + + + R ++ E E+
Sbjct: 379 YLLNGSNFNNPEYDAIEESNTYSSIIPDVVLVKKHYPNRRRNRRRNWKLKRMAKDEGELL 438
Query: 329 GSKCGADREKVNNEYEEFLRDL 350
K AD+E+++ EYE FLRD+
Sbjct: 439 PKK--ADQERMDKEYEMFLRDV 458
>gi|310795204|gb|EFQ30665.1| NMD3 family protein [Glomerella graminicola M1.001]
Length = 496
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 135/446 (30%), Positives = 202/446 (45%), Gaps = 117/446 (26%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K VDI++ +Q+ A + C
Sbjct: 5 TILCCNCGAPIDGTTAAGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLLPPSSWVVA 64
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--D 77
++K+K+T+Q EV GV+++QS
Sbjct: 65 APESRELLALCLKKLKGLNKIRIIDASFVWTEPHSRRVKVKITIQDEVQTGVLLQQSFEA 124
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C + + + W A+VQ+ +LI KH A IK
Sbjct: 125 VYIVAYQQCPDCAKSYT---ANVWRASVQVRQKVLHKRTFLFLEQLIMKHGAHRDTLNIK 181
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ GI+F+FS R+ A KF +F+ VVP + + ++L+S+ + K+T SVE+ I
Sbjct: 182 EAKDGIDFYFSARNQAEKFCDFLNSVVPCKVKKSQELISQDVHTSTKSYKFTFSVELIPI 241
Query: 184 SAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
+L GN+ P VIC K+ S+ LLDP TL+ + A YWR+PF +L
Sbjct: 242 CRDDLVAMPIKLAKASGNISPLVICHKIGTSVYLLDPNTLQTADVSAPIYWRAPFHSLAD 301
Query: 233 SRQLVEYIVLD---------------VKVASTE----NDTILSTRTHLGHLLILGDYAIG 273
+Q VE+IV+D V+VA ND RTH+G+LL GD +G
Sbjct: 302 VKQFVEFIVMDIEPTNITKGKWRLAEVQVARASDLGVNDKTYFARTHMGNLLHAGDSVLG 361
Query: 274 YDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
Y L N N+ E + Y S + PD I +KK Y N+RKHR N KLK M
Sbjct: 362 YMLTGTNFNNEEFDAIEESHAYGSTI-PDVILVKKHY--PNRRKHRNRN-WKLK--RMNK 415
Query: 328 DGSKC---GADREKVNNEYEEFLRDL 350
D + AD++++N +YE+FLRD+
Sbjct: 416 DEGELLPKQADQDRMNEDYEQFLRDV 441
>gi|115389230|ref|XP_001212120.1| 60S ribosomal export protein NMD3 [Aspergillus terreus NIH2624]
gi|114194516|gb|EAU36216.1| nonsense-mediated mRNA decay protein 3 [Aspergillus terreus
NIH2624]
Length = 507
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 134/454 (29%), Positives = 200/454 (44%), Gaps = 116/454 (25%)
Query: 2 VQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
V AG V T C CG +V S +C C+K+ VDI++ +Q+ A + C
Sbjct: 11 VPMAGTEPVVPTTLCYNCGAPLV--GSTLCNDCMKTSVDISQGIQREAALNFCRDCERWL 68
Query: 56 ---------------------------------------------KIKLKLTVQKEVLEG 70
+IKLKLT+Q V
Sbjct: 69 LPPATWTVAAPESRELMAICLRKLKRLNKVRVVDASFIWTEPHSRRIKLKLTIQDSVAND 128
Query: 71 VIVEQS----DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQK 112
VI++Q+ VVM + C + + Q +HW A+VQ+ +LI K
Sbjct: 129 VILQQTFEVVYVVMYQQ--CPDCAKSYTQ---NHWRASVQVRQNVSHKRTFLHLEQLILK 183
Query: 113 HDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKC 172
H+A T IK+ +G++FFF+ R+HA F+ F+ VVP + +QL+S +
Sbjct: 184 HNAHHDTTNIKEARNGVDFFFAQRNHAEAFLNFLHAVVPVEVTKSQQLISEDIHTSTKSY 243
Query: 173 KYTCSVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQ 221
K+T S ++ + A LGN+ P ++C K+ SI LDP TL+ L
Sbjct: 244 KFTYSAKLVPVCKDDLIALPIKMAQQLGNISPLLLCNKIGTSITFLDPNTLQTADLSPKI 303
Query: 222 YWRSPFKALHTSRQLVEYIVLDVKVASTEN------------------DTILSTRTHLGH 263
YWR+PF +L +LVE+IVLD++ N D TRTHLG
Sbjct: 304 YWRAPFTSLAEVNELVEFIVLDIEPTGYSNGKWLLAEVTVARASDFSGDKQFFTRTHLGS 363
Query: 264 LLILGDYAIGYDLHEANQNDIELEN------YKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
+L GD +GY + AN N+ E E Y + V PD + +KK Y + ++ R
Sbjct: 364 ILHPGDSVLGYMVTGANFNNPEFEQIEQSKTYGARV-PDVVLVKKHYPNRQKKNKRN--- 419
Query: 318 PKLKPLEM-EVDGSKCGADREKVNNEYEEFLRDL 350
KLK L + E D ++E+V N++E FLRD+
Sbjct: 420 WKLKRLAVGESDLLPTDHEQERVENDFEMFLRDV 453
>gi|388579793|gb|EIM20113.1| NMD3-domain-containing protein, partial [Wallemia sebi CBS 633.66]
Length = 487
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 124/433 (28%), Positives = 192/433 (44%), Gaps = 111/433 (25%)
Query: 26 NASNMCVTCLKSEVDITESLQKHANITPC------------------------------- 54
N++N+CV CL++ VDIT + K +++T C
Sbjct: 1 NSANLCVGCLRNTVDITAEIPKSSSVTFCRGCDRYSNPPNGWVLADWESRELLAICLKKL 60
Query: 55 --------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFM 94
+IK+KLTVQKEVL I++Q ++ I
Sbjct: 61 KGLSKIRLIDAGFVWTEPHSKRIKVKLTVQKEVLANTILQQV-FEVTYTILGAQCPDCTR 119
Query: 95 QTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAV 140
+ W ++Q+ +LI KH A I + G++F++ R A+
Sbjct: 120 MAAKNTWQTSIQVRQKVPHKRTFFYLEQLILKHGAHKDCVNILERKDGLDFYYLQRQAAL 179
Query: 141 KFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLG 189
+ +EF+ VVP + + ++L++ + + K K+T SVEI + A
Sbjct: 180 RMLEFLQNVVPLRYKASEELLTTDVHTGSSKYKFTYSVEIVPVCKDDLVCLPIKLARQFS 239
Query: 190 NLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK---- 245
N+ P V+C+++ NS+ LLDP TL + A YWR+PF+ L T +LVEYIVLD++
Sbjct: 240 NISPLVLCSRIGNSVHLLDPMTLHVTDVTAPTYWRAPFETLATVGELVEYIVLDIEPLGP 299
Query: 246 ---------------VASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYK 290
+D I TRTHLGH+L GD +GY+L ++N N E+
Sbjct: 300 TRGKLVLADVQVMKASGGASDDEIFHTRTHLGHILQAGDSCLGYNLKDSNFNSDNFESLN 359
Query: 291 SLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKC-GA------------DRE 337
PD + +KK+Y N+RK +P KLK + + + S GA D +
Sbjct: 360 QDRLPDVVIVKKAY--PNRRKKNRPRQWKLKSIAKDAEDSNVEGAFGRGALGRRGGVDTD 417
Query: 338 KVNNEYEEFLRDL 350
KV +YEEFL DL
Sbjct: 418 KVEKQYEEFLNDL 430
>gi|114590191|ref|XP_516854.2| PREDICTED: 60S ribosomal export protein NMD3 [Pan troglodytes]
gi|410333631|gb|JAA35762.1| NMD3 homolog [Pan troglodytes]
Length = 503
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 134/495 (27%), Positives = 210/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + SN +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISSNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|19526940|ref|NP_598548.1| 60S ribosomal export protein NMD3 [Mus musculus]
gi|81903129|sp|Q99L48.1|NMD3_MOUSE RecName: Full=60S ribosomal export protein NMD3
gi|13277951|gb|AAH03842.1| NMD3 homolog (S. cerevisiae) [Mus musculus]
gi|26353722|dbj|BAC40491.1| unnamed protein product [Mus musculus]
gi|74147592|dbj|BAE38680.1| unnamed protein product [Mus musculus]
gi|74208223|dbj|BAE26326.1| unnamed protein product [Mus musculus]
gi|148683546|gb|EDL15493.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 503
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 135/495 (27%), Positives = 212/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ +VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ IC +VT++I L+DP TL+ +D + +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK E+
Sbjct: 372 GDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLK--ELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 427 DRENMDTDDER---QYQDFLEDLEEDEAIRKHVNIYRDATIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|296227669|ref|XP_002759470.1| PREDICTED: 60S ribosomal export protein NMD3 [Callithrix jacchus]
Length = 503
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 133/493 (26%), Positives = 205/493 (41%), Gaps = 132/493 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLNKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVV-D 133
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
+ C D W A +Q+ +LI K+ +IK++
Sbjct: 134 YVVQCQMCGDCHRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHD 193
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI +
Sbjct: 194 GLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCKDN 253
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +QL
Sbjct: 254 VVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADVDGSTFWNHPFNSLCHPKQL 313
Query: 237 VEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLILGD 269
E+IV+D K + D RTHLGHLL GD
Sbjct: 314 EEFIVMDCSIVRDIKRGAGAGMISKKHTLGEVWVQKTSELNTDKQYFCRTHLGHLLNPGD 373
Query: 270 YAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
+G+DL N ND + S PD + IKKSY +++ R KLK L E +
Sbjct: 374 LVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELAREREN 430
Query: 330 SKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYLLA 370
+R +Y++FL DL + S TD E P + L +L
Sbjct: 431 MDTDDER-----QYQDFLEDLEEDETIRKNVNIYRDSAIPVESDTDDEGAPRISLAEMLE 485
Query: 371 DLDSSDKEEGDDS 383
DL S G +
Sbjct: 486 DLHISQDATGGEG 498
>gi|148683547|gb|EDL15494.1| NMD3 homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 559
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 135/495 (27%), Positives = 212/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 71 ILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALE 130
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 131 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 190
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 191 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 247
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ +VP + + ++L+S+ S K T SVEI I
Sbjct: 248 HDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 307
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ IC +VT++I L+DP TL+ +D + +W PF +L +
Sbjct: 308 DNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 367
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 368 QLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNTDKQYFCRTHLGHLLNP 427
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK E+
Sbjct: 428 GDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLK--ELAR 482
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 483 DRENMDTDDER---QYQDFLEDLEEDEAIRKHVNIYRDATIPVESDTDDEGAPRISLAEM 539
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 540 LEDLHISQDATGEEG 554
>gi|449678782|ref|XP_004209161.1| PREDICTED: 60S ribosomal export protein NMD3-like [Hydra
magnipapillata]
Length = 488
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 131/481 (27%), Positives = 215/481 (44%), Gaps = 110/481 (22%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------- 55
++T+ CC+CG N SN+C+ C++S+VDI+E +QK A + C
Sbjct: 10 GTQQTILCCQCGTPTPPNPSNICINCIRSQVDISEGIQKQAILPFCKSCERYFHPPSSWI 69
Query: 56 --------------------------------------KIKLKLTVQKEVLEGVIVEQSD 77
+IK+KLT+QKEVL I++Q+
Sbjct: 70 QCQLESRELLALCLKKLKGLNKSHLVDAGFIWTEPHSKRIKVKLTIQKEVLGSTILQQTF 129
Query: 78 VV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV + ++ C + + D W A VQ+ +LI KH+ + +
Sbjct: 130 VVDYIVQSQMCDDC---HRREAKDFWQAVVQIRQKVSHKKTFYYLEQLIMKHNIHSNSLN 186
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ G++F+++ + HA + ++F+ VVP + + ++L+S ++ K T SVE++
Sbjct: 187 IKQVHDGLDFYYANKQHAKRMLDFLQTVVPCRFKTSERLISHDIQNNTFNSKSTFSVELA 246
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +L N+ VICTK+T+SI L+DPFT + L A YWR PF A
Sbjct: 247 PICKNDIICLPKKVAKSLSNISQIVICTKITSSIHLVDPFTGKVVELLASAYWRDPFNAF 306
Query: 231 HTSRQLVEYIVLDVKV--------------------ASTENDTILSTRTHLGHLLILGDY 270
+++QL E+ VLD + S+ +D RTHLGHLL GD
Sbjct: 307 TSTKQLSEFTVLDTEKDFETMNSKYCKADVYLMKNNDSSGSDGQFHCRTHLGHLLSAGDI 366
Query: 271 AIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGS 330
G+D +N ND L+ PD + + + K + K P + E D
Sbjct: 367 VAGFDFSTSNTNDSNLDLMNGDNIPDVLYGDRKKRSKKRNWKLKELPKETLEKEDNNDDY 426
Query: 331 KCGADREKVNNEYEEFL---RD---LMASVTDKEDVPSVPLDYLLADLDSSD---KEEGD 381
+ + + + EY L RD + S +D +D P + L+ ++ DL D + +GD
Sbjct: 427 EEFLEDLEEDKEYRMGLNIYRDRSKVSQSESDLDDAPQISLEEMMDDLQIEDHPMESDGD 486
Query: 382 D 382
+
Sbjct: 487 E 487
>gi|395843852|ref|XP_003794686.1| PREDICTED: 60S ribosomal export protein NMD3 [Otolemur garnettii]
Length = 504
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 133/493 (26%), Positives = 210/493 (42%), Gaps = 136/493 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K V+F+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVDFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D + +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSLVQNLKRGAGAGMVSKKHTLGEVWVQKTSEMDTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRIPDVVLIKKSYDRSKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D +R +Y++FL DL + S TD E P + L +
Sbjct: 429 DNMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGD 381
L DL S G+
Sbjct: 484 LEDLHISQDATGE 496
>gi|328863106|gb|EGG12206.1| hypothetical protein MELLADRAFT_46699 [Melampsora larici-populina
98AG31]
Length = 549
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 131/456 (28%), Positives = 195/456 (42%), Gaps = 125/456 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG + N + +CV CL++ VDITE + K ++ C
Sbjct: 20 VLCADCGTAIEPNTAGLCVNCLRNTVDITEEIPKQTALSFCRNCSRYLSPPQTWLLAELE 79
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQ-----SD 77
++++KLT+QKEVL I++Q
Sbjct: 80 SKELLAICLRRLKGLTKVRLIDAGFIWTEPHSKRLRVKLTIQKEVLASTILQQIFEVEYI 139
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V ++ TC L M W A VQ+ +LI KH A IK
Sbjct: 140 VQHTQCPTCCRLAAKNM------WRALVQVRQKVDHKRTFLYLEQLILKHSADKDTVGIK 193
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++FF++ R HA+K VEF+ + P +S+ +QL+S KS K+T SVE+ I
Sbjct: 194 ESKDGLDFFYATRQHAIKMVEFLSAITPVRSKTSEQLISADEKSSTANYKFTYSVELVPI 253
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A + N+ ++CT+V S+ L+DP TL+ L YWR+PF L +
Sbjct: 254 CKDDIVCLPAKLARSQANVAQILVCTRVGTSVHLVDPITLQAIDLQGPVYWRNPFPPLAS 313
Query: 233 SRQLVEYIVLDVK----------------------VASTENDTILSTRTHLGHLLILGDY 270
+E++VLD++ +S +D I TRTHLG +L GD
Sbjct: 314 VSNCIEFVVLDIEPTCHPPKHVGKFYLADAQVSPVTSSMGDDAIFHTRTHLGGILRPGDT 373
Query: 271 AIGYDLHEANQNDIELENYKSLVPPDTIKIKKSY------------KEKNQRKHRKPNP- 317
+GY L +N ND E KS P+ I ++K+Y K ++ K + P
Sbjct: 374 VLGYHLANSNFNDTNFELMKSDRIPEVILVRKTYPNRRKRNRTRNWKLRSIAKEAQDAPE 433
Query: 318 --PKLKPLEMEV-DGSKCGADREKVNNEYEEFLRDL 350
L ++E GS+ AD+ KV EYE FLRDL
Sbjct: 434 DHAGLGRAKVEAKKGSRGMADQAKVEAEYELFLRDL 469
>gi|91091920|ref|XP_967150.1| PREDICTED: similar to nonsense-mediated mrna decay protein
[Tribolium castaneum]
gi|270000793|gb|EEZ97240.1| hypothetical protein TcasGA2_TC011038 [Tribolium castaneum]
Length = 503
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 202/451 (44%), Gaps = 122/451 (27%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------- 54
A + + CC+CG + N SNMCV CL+++VDITE + K + C
Sbjct: 12 APKNKILCCECGTPIEPNPSNMCVPCLRTKVDITEGIPKQVTLQFCRGCERYYSPPSEWT 71
Query: 55 -------------------------------------PKIKLKLTVQKEVLEGVIVEQS- 76
+IK+KL V EVL G ++EQ
Sbjct: 72 HCVLESKELLSLCLKKLKGLSRVKLVDAGFVWTEPHSKRIKVKLRVHGEVLGGAVLEQVF 131
Query: 77 --DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARAT 120
D V+S ++ C + Q + W A VQ+ +LI KH A
Sbjct: 132 IVDYVVSHHM-CDDCHRSEAQ---NFWRALVQVRQKAENKKTFYYLEQLILKHKAHDNTL 187
Query: 121 KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI 180
IK + G++FF++ +HA K V+F+ ++P + H K+L+S S K+T SVEI
Sbjct: 188 GIKPIHDGLDFFYATEAHARKMVDFLAAMLPCKYNHSKKLISHDIHSNLYNYKFTYSVEI 247
Query: 181 SAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+S LG + P + +VTNS+ L+DP + +++ YWRSPF A
Sbjct: 248 VPVSKDSLVCLPKKLTQQLGGISPICLVYRVTNSLHLIDPSRAQIAEINSTVYWRSPFNA 307
Query: 230 LHTSRQLVEYIVLDVK---------------------------VASTE---NDTILSTRT 259
+ +QLVEY+V+D++ V ++E +D + TRT
Sbjct: 308 ICNPKQLVEYVVMDIEPIMDKDRKTFPGQGAISNKHVLSDIWVVRASELGVSDNTIHTRT 367
Query: 260 HLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
HLGH+L GDY +GY+L ++N ND + PD + +KK Y ++++RK R+ K
Sbjct: 368 HLGHVLKPGDYVLGYNLEDSNINDGNFDKLDKNSVPDVVLVKKYY-DRSERKRRRVW--K 424
Query: 320 LKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
LK M + + D N +Y EFL DL
Sbjct: 425 LK--HMAQEETALITD----NRDYNEFLDDL 449
>gi|261200437|ref|XP_002626619.1| 60S ribosomal export protein NMD3 [Ajellomyces dermatitidis
SLH14081]
gi|239593691|gb|EEQ76272.1| nonsense-mediated mRNA decay protein 3 [Ajellomyces dermatitidis
SLH14081]
gi|239607431|gb|EEQ84418.1| nonsense-mediated mRNA decay protein 3 [Ajellomyces dermatitidis
ER-3]
Length = 528
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 202/445 (45%), Gaps = 114/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I ++A +C C+K VDI++ +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTSAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQPPSQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+TVQ+E EG I++Q+
Sbjct: 84 TLESRELLALCLRKLRGLGKVRIIDAGFIWTEPHSKRIKVKITVQQEAFEGTILQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + P+ W AAVQ+ +LI KH+A
Sbjct: 144 EYVVASQQ--CSECAKSYT---PNTWRAAVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRG--TKSRNCKCKYT---- 175
IK+ G++FFFS R+HA K V+F+ V P + + ++L+S T +++ K Y+
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKISYSVYLV 258
Query: 176 --CSVEISAIS---AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
C ++ A+ A +LGN+ P +C +V SI+LLDP TL+ + + YWR+PFK +
Sbjct: 259 PICKDDLVALPISLAKSLGNIHPLTLCYRVGTSISLLDPATLQTADIPSPIYWRTPFKGV 318
Query: 231 HTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYA 271
++LVE+IV+D++ A NDT TRTHLG +L +GD
Sbjct: 319 ADVQELVEFIVMDIEPAGRSVGHFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHVGDSV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
GY L +N ND E Y S + PD I ++K Y K + K R ++ E
Sbjct: 379 KGYLLSGSNFNDANYEALEQSHTYSSTI-PDVILVRKHYPRKKKPK-RNWRLKRMNREEE 436
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E S +R++ ++E FLRD+
Sbjct: 437 EAAASSRKQERDRAEEDFEMFLRDV 461
>gi|429862074|gb|ELA36733.1| nonsense-mediated mrna decay protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 499
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 126/443 (28%), Positives = 196/443 (44%), Gaps = 111/443 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A+ +C C+K VDI+ +Q+ A + C
Sbjct: 5 TILCCNCGAPIDGTTAANALCFDCIKLTVDISNGVQREATLNFCRDCDRWLLPPTSWIVA 64
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--D 77
++K+K+T+Q EV GV+++QS
Sbjct: 65 APESRELLALCLKKLKGLHKVRIIDASFVWTEPHSRRVKVKITIQDEVQSGVLLQQSFEA 124
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V + C + + + W A VQ+ +LI KH A IK
Sbjct: 125 VFIVAYQQCPDCAKSYT---ANVWRACVQVRQKVLHKRTFLYLEQLIMKHGAHRDTLNIK 181
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ GI+FFFS R+ A KFV+F+ V P + + ++L+S+ + K+T S E+ I
Sbjct: 182 EAKDGIDFFFSARNQAEKFVDFLNSVAPCRVKKAQELISQDIHTSTKSYKFTFSAELIPI 241
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +LGN+ P VIC K+ ++ LLD TL+ + +D YWR+PF +L
Sbjct: 242 CRDDLVAMPIKLAKSLGNISPLVICHKIGTAVYLLDTNTLQTASIPSDIYWRAPFNSLAD 301
Query: 233 SRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIG 273
++ LVE+IV+D++ ND RTHLG LL GD +G
Sbjct: 302 AKSLVEFIVMDIEPTGVSRGKWQLGEVQVMRAADLGVNDKTYFARTHLGGLLHAGDSVMG 361
Query: 274 YDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
Y L N N+ E + Y S + PD + +KK Y K + + R ++ E E+
Sbjct: 362 YMLTGTNFNNPEFDAIEESHAYGSTI-PDVVLVKKHYARKRKTRTRNWKLKRMAKDEGEL 420
Query: 328 DGSKCGADREKVNNEYEEFLRDL 350
K AD+E+++ EYE+FLRD+
Sbjct: 421 LPKK--ADQERMDEEYEQFLRDV 441
>gi|194222558|ref|XP_001493978.2| PREDICTED: 60S ribosomal export protein NMD3 [Equus caballus]
Length = 503
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 137/499 (27%), Positives = 209/499 (41%), Gaps = 139/499 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAAFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W VQ+ +LI K+ +IK++
Sbjct: 135 VVQPQMCGDC---HRVEAKDFWKTVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSQPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV+D K + D RTHLGHLL
Sbjct: 312 QLEEFIVMDCSIVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELPRER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNVYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDK---EEGDDSM 384
L DL S EEGD M
Sbjct: 484 LEDLHISQDATGEEGDSMM 502
>gi|354482257|ref|XP_003503315.1| PREDICTED: 60S ribosomal export protein NMD3 [Cricetulus griseus]
Length = 516
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 135/492 (27%), Positives = 210/492 (42%), Gaps = 136/492 (27%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------------- 55
CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 30 CCECGVPISPNPANVCVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALESR 89
Query: 56 --------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--MS 81
++K+KLT+QKEV+ G I++Q VV +
Sbjct: 90 ELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVV 149
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 150 QSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHD 206
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 207 GLDFYYSSKQHAQKMVEFLQGTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDN 266
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A +LGN+ IC +VT++I L+DP TL+ +D + +W PF +L +QL
Sbjct: 267 VVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPKQL 326
Query: 237 VEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLILGD 269
E+IV++ K + D RTHLGHLL GD
Sbjct: 327 EEFIVMECSIVRDLKRSAGAGIISKKHTLGEVWIQKTSEMNTDKQYFCRTHLGHLLNPGD 386
Query: 270 YAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
+G+DL N ND + S PD + IKKSY +++ R KLK E+ D
Sbjct: 387 LVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLK--ELARDR 441
Query: 330 SKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYLLA 370
D E+ +Y++FL DL + S TD E P + L +L
Sbjct: 442 EDMDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSTVPVESDTDDEGAPRISLAEMLE 498
Query: 371 DLDSSDKEEGDD 382
DL S G++
Sbjct: 499 DLHISQDATGEE 510
>gi|320582188|gb|EFW96406.1| hypothetical protein HPODL_2063 [Ogataea parapolymorpha DL-1]
Length = 505
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/446 (29%), Positives = 198/446 (44%), Gaps = 114/446 (25%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S MC C+K VDIT + + ANI+ C
Sbjct: 17 TVLCCNCGVPMDGSTGLVMCYDCIKLNVDITAGIPREANISFCRNCERFLQPPQQWMRAE 76
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E L I++QS V
Sbjct: 77 LESRELLAICLRRLKGLNKVRLIDASFIWTEPHSRRIRIKLTVQGEALTNTIIQQSFEVE 136
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W AAVQ+ +LI KH+A IK+
Sbjct: 137 YVVVAMQCPDCAKSYT---ANTWRAAVQIRQKVQHKRTFLYLEQLILKHNAHMDTISIKE 193
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++F++S R+HA K ++F+ VVP +S+ ++L+S+ S + K+T SVEI I
Sbjct: 194 SKDGLDFYYSQRNHAAKMIDFLNSVVPIKSKKSEELISQDIHSGTSQYKFTFSVEIVPIC 253
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++G++ V+C+KV+N + +DP +L+ L A +WR+PF AL
Sbjct: 254 KDDLVVLPKKLAKSMGDMSRLVLCSKVSNMVQFIDPVSLQTGDLLAQVFWRTPFVALADV 313
Query: 234 RQLVEYIVLDVKVASTENDTIL-------------------STRTHLGHLLILGDYAIGY 274
Q+VE+IVLDV+ N L R+HLG +L GD A+GY
Sbjct: 314 TQMVEFIVLDVEPTGQRNGRWLLADVTVARASDMGSNDQEYYVRSHLGGILHPGDSALGY 373
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR-KHRKPNPPKLKPLEME------- 326
L +N N+ + + PD + +KK Y N+R KHR KLK + E
Sbjct: 374 FLTNSNFNNELFDELNTDTIPDVVLVKKHYVRSNKRMKHRN---WKLKRMANEHKDLVAD 430
Query: 327 --VDGSKCGADREKVNNEYEEFLRDL 350
VD + + EK +YE FL++L
Sbjct: 431 EIVDSRQARQEAEKAERDYELFLQEL 456
>gi|197101775|ref|NP_001127311.1| 60S ribosomal export protein NMD3 [Pongo abelii]
gi|75056728|sp|Q5RC82.1|NMD3_PONAB RecName: Full=60S ribosomal export protein NMD3
gi|55727749|emb|CAH90625.1| hypothetical protein [Pongo abelii]
Length = 503
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 134/495 (27%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLTVQKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYHLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|193787720|dbj|BAG52923.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|115908403|ref|XP_788633.2| PREDICTED: 60S ribosomal export protein NMD3 [Strongylocentrotus
purpuratus]
Length = 513
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 134/452 (29%), Positives = 199/452 (44%), Gaps = 129/452 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG + N +NMCV CL+++VDITE + K A + C
Sbjct: 14 ILCCQCGTPIQPNPANMCVACLRTQVDITEGIPKQAAVYFCKACERYLQPPAQWITCTLE 73
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMSR 82
++K+KLT+QKEV G +++Q +V
Sbjct: 74 SRELLALCLKKLKGLAKVRLIDAGFVWTEPHSKRLKVKLTIQKEVQSGTVLQQVFIVDF- 132
Query: 83 NITCVNLVPGFMQT------GPDHWDAAVQL--------------ELIQKHDAPARATKI 122
+V G M T D+W A VQ+ +LI KH+ +
Sbjct: 133 ------VVQGQMCTDCHRVEAKDYWRAVVQVRQKTAHKKTFYYLEQLILKHNLHVNCLNV 186
Query: 123 KKMDHGIEFFFSGRSH---AVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVE 179
K+ D GI+F+++ + A K V+F+ VVP + + +QL+S + KYT SVE
Sbjct: 187 KQHDEGIDFYYASKDQSNGARKMVDFLMSVVPCKYKLSQQLISHDIHNNTYSYKYTYSVE 246
Query: 180 ISAISAHN-----------LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFK 228
I I N LGN+G +C +V +++ L+DP TL+ L+A +WR+PF
Sbjct: 247 IVPICKDNVVCLPKKLAASLGNIGQICVCIRVCSTVQLIDPNTLQIVELNATTFWRNPFS 306
Query: 229 ALHTSRQLVEYIVLDV-KVASTE-----------------------------NDTILSTR 258
+L QL EY VL V +VA ++ DT R
Sbjct: 307 SLCDPHQLTEYTVLQVERVADSDVKHVKGGGAKSKKHLLADVWLMRSQDMGVVDTQYHCR 366
Query: 259 THLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPP 318
T LGHLL GD G DL +N N+ LE K+ PD + +KK + +++ R+HRK N
Sbjct: 367 TFLGHLLSAGDTVKGLDLVNSNVNNKALEQMKAETLPDVVIVKKYFGDRS-RRHRKRN-W 424
Query: 319 KLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
KLK + EV + A+R +Y FL DL
Sbjct: 425 KLKTMTKEVALHENAAER-----DYMGFLEDL 451
>gi|119599024|gb|EAW78618.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119599025|gb|EAW78619.1| NMD3 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 503
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|291400106|ref|XP_002716402.1| PREDICTED: NMD3 homolog [Oryctolagus cuniculus]
Length = 503
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCGLE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|19923796|ref|NP_057022.2| 60S ribosomal export protein NMD3 [Homo sapiens]
gi|74731412|sp|Q96D46.1|NMD3_HUMAN RecName: Full=60S ribosomal export protein NMD3; Short=hNMD3
gi|15426434|gb|AAH13317.1| NMD3 homolog (S. cerevisiae) [Homo sapiens]
gi|190690621|gb|ACE87085.1| NMD3 homolog (S. cerevisiae) protein [synthetic construct]
gi|190691981|gb|ACE87765.1| NMD3 homolog (S. cerevisiae) protein [synthetic construct]
Length = 503
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|213408477|ref|XP_002175009.1| 60S ribosomal export protein NMD3 [Schizosaccharomyces japonicus
yFS275]
gi|212003056|gb|EEB08716.1| nonsense-mediated mRNA decay protein [Schizosaccharomyces japonicus
yFS275]
Length = 505
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 127/447 (28%), Positives = 197/447 (44%), Gaps = 101/447 (22%)
Query: 1 MVQAAGIFAV-----RKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP 55
MV AAG + + T+ CC+CG+ + N + MC+ C+K DITE + + ++ C
Sbjct: 5 MVNAAGFSYIASESTQSTILCCQCGVPIPQNPAAMCLDCIKMSTDITEGIPRDGMLSYCR 64
Query: 56 ---------------------------------------------------KIKLKLTVQ 64
++K+KLTVQ
Sbjct: 65 ECERYLQPPNVWVAAQLESRELMAICLKKLRGLNQVRLIDASFIWTEPHSRRVKVKLTVQ 124
Query: 65 KEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDH-WDAAVQL--------------EL 109
KE I++QS VV + P +T H W A VQ+ ++
Sbjct: 125 KEAFTNTILQQSMVV--EYVVNYTQCPDCARTYTPHIWKACVQVRQKVLHKRTFLYLEQV 182
Query: 110 IQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRN 169
I K+ A IK+ GI+FF+S R+HA+K +EF+ VVP +S+ ++L+S+ KS
Sbjct: 183 ILKNRAHLNTVNIKEAKDGIDFFYSQRTHAIKMMEFLNAVVPIRSKSSEELISKDIKSNT 242
Query: 170 CKCKYTCSVEISAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLD 218
K+T S+EI I +L GN+ ++CTKV +I +DP TL+ C +
Sbjct: 243 AHYKFTYSIEIVPICKDDLVCLPKPLAKAHGNISQLLLCTKVGTTIHFIDPLTLQTCEML 302
Query: 219 ADQYWRSPFKALHTSRQLVEYIVLDVK-VASTENDTILS--------------TRTHLGH 263
YW PF +L +L E+IV DV + T +L+ RTHLG
Sbjct: 303 PTTYWHMPFPSLADIGELSEFIVADVDFLGPTNGKNVLADVELIKSSDGSTHMARTHLGA 362
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
LL G+ + Y + N N+ + K + PD I +KK+Y +RK+R +
Sbjct: 363 LLSAGNTVLCYHMAITNFNNEIFDALKDNLIPDVIIVKKTYSNPKRRKNRFWKLKSIGID 422
Query: 324 EMEVDGSKCGADREKVNNEYEEFLRDL 350
+ E++ K D E+ +YE FLR+L
Sbjct: 423 QGELEPKK--QDLERQERDYELFLRNL 447
>gi|410209362|gb|JAA01900.1| NMD3 homolog [Pan troglodytes]
gi|410266978|gb|JAA21455.1| NMD3 homolog [Pan troglodytes]
gi|410304762|gb|JAA30981.1| NMD3 homolog [Pan troglodytes]
Length = 503
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|4680653|gb|AAD27716.1|AF132941_1 CGI-07 protein [Homo sapiens]
Length = 503
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVIECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|195059016|ref|XP_001995545.1| GH17705 [Drosophila grimshawi]
gi|193896331|gb|EDV95197.1| GH17705 [Drosophila grimshawi]
Length = 525
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 135/499 (27%), Positives = 211/499 (42%), Gaps = 144/499 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC+CG+ + N +NMCVTCL++ VDITE++ K A + C
Sbjct: 25 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWVQASLE 84
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--M 80
+IK+KLTV E+ G +++Q +V
Sbjct: 85 SRELLAVCLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEISGGTVLQQVFIVEFT 144
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+N C + D W VQ+ +LI K+ A IK
Sbjct: 145 VQNQMCDDC---HRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKYKAHENTLGIKPEH 201
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA- 185
G++F++ +HA + V+F+ +VPA+ K+L+S S N KY+ SVEI+ IS
Sbjct: 202 GGLDFYYVSENHARRMVDFLQTMVPAKVTTSKRLISHDIHSNNYNYKYSWSVEIAPISKD 261
Query: 186 ----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
LGN+ P + +V++SI L+DP T + + Y+R+PF+A+ +Q
Sbjct: 262 SAVCLTKKLRQQLGNISPVCLVNRVSSSIHLIDPMTAQIAEITTQLYFRAPFEAICNPKQ 321
Query: 236 LVEYIVLDVKVASTE------------------------------NDTILSTRTHLGHLL 265
LVEY+V+D+ + + ND + TR+HLGHLL
Sbjct: 322 LVEYVVMDIDIIHDKDRKSYPGQGTVSFKHALCDIWVVRASELGINDNPIHTRSHLGHLL 381
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GD +GY+ EAN ND E + + PD + ++K Y + + R K+K L
Sbjct: 382 KVGDSVMGYNTGEANINDAEFDKLSPELIPDVVLVRKHYDRQARLNQRL---WKIKHLAD 438
Query: 326 EVDGSKCGADREKVNNEYEEFLRDLMASVT---------------------DKEDVPSVP 364
E A E+ +Y EFL D+ +V D D+P +
Sbjct: 439 E-------ATDERSKYDYHEFLDDIEENVEIRGQINVYRDSKKTIPVDVQPDGADLPQIT 491
Query: 365 LDYLLAD--LDSSDKEEGD 381
L +L D L+ +D E GD
Sbjct: 492 LAEMLEDMTLECADDEMGD 510
>gi|302895403|ref|XP_003046582.1| 60S ribosomal export protein NMD3 [Nectria haematococca mpVI
77-13-4]
gi|256727509|gb|EEU40869.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 518
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 203/442 (45%), Gaps = 109/442 (24%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I ++A +C C+K VDI++ +Q+ A + C
Sbjct: 23 TILCCNCGAPIDGTTSAGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLMPPTSWIVA 82
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+KLT+Q V +G++++QS V
Sbjct: 83 SPESRELLALCLKKLRGLNKVRIVDASFVWTEPHSRRIKVKLTIQDAVQDGMLLQQSFEV 142
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
M + P ++ + W AAVQ+ +LI KH A IK+
Sbjct: 143 MY--VVAYQQCPECAKSYTANVWRAAVQVRQKVLHKRTFLFLEQLIMKHGAHRDTLNIKE 200
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
GI+FFFS ++ A KF++F+ VVP + + ++L+S + K+T S E+ I
Sbjct: 201 AKDGIDFFFSQKNQAEKFIDFLNSVVPVKVKASQELISHDVHTSKTSYKFTYSAELVPIC 260
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+L GN+ P ++C ++ S+ LLDP TL+ C + A YWR+PF +L +
Sbjct: 261 KDDLVAMPIKMAKQNGNVSPLLLCHRIGTSVYLLDPQTLQTCDISAPIYWRAPFLSLTDT 320
Query: 234 RQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGY 274
+LVE+IV+D++ +T+ ND TRTHLG L GD A+GY
Sbjct: 321 HELVEFIVMDIEPTNTQKGKWTLAEATVARASDLGHNDRTYFTRTHLGRFLQPGDSAMGY 380
Query: 275 DLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
L N+ E E Y S + PD + +KK Y + + ++R ++ E E+
Sbjct: 381 LLSGTVFNNTEYEAIEASNQYGSTI-PDVVLVKKHYPRRRKNRNRNWKLKRMNKDEGELL 439
Query: 329 GSKCGADREKVNNEYEEFLRDL 350
K AD+++++ EYE+FLRD+
Sbjct: 440 PKK--ADQDRMDREYEQFLRDV 459
>gi|296423194|ref|XP_002841140.1| 60S ribosomal export protein NMD3 [Tuber melanosporum Mel28]
gi|295637374|emb|CAZ85331.1| unnamed protein product [Tuber melanosporum]
Length = 530
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/440 (28%), Positives = 204/440 (46%), Gaps = 108/440 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPC----------------- 54
TV C CG + S MC C+K VDI++ +Q+ A I C
Sbjct: 19 TVLCATCGAPIDGSTGVAMCYDCIKLNVDISDGIQREATIHFCRGCDRWLQPPTQWVSAA 78
Query: 55 ----------------------------------PKIKLKLTVQKEVLEGVIVEQS---D 77
+I++K+TVQ+E + I++QS +
Sbjct: 79 LESRELLALCLRKLRGLAKVRIIDASFIWTEPHSKRIRVKITVQQEAFQSTILQQSFEVE 138
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V++ + C + F + W A VQ+ +LI KH+A I+
Sbjct: 139 YVVAYH-QCPDCAKSFTA---NTWRACVQVRQKVPHKRTFLYLEQLILKHNAHKDTINIR 194
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++F++S R+HA K V+F+G VVP S+ +L+S + K+T SVE+ I
Sbjct: 195 EVKDGLDFYYSQRNHATKMVDFLGAVVPITSKKSSELISTDIHTSTKSYKFTYSVELVPI 254
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +LGN+ P ++CT++ NSI L+DP TL+ + YWR+PF +L
Sbjct: 255 CKDDLVCIPIKMARSLGNISPLLLCTRIGNSIHLMDPGTLQVADVQTSVYWRAPFSSLAD 314
Query: 233 SRQLVEYIVLDVKVA--------------STENDTILST-----RTHLGHLLILGDYAIG 273
++LVE+IVLD++ + + +D + +T RTHLG +L GD +G
Sbjct: 315 VQELVEFIVLDIEPSGPTHGRFVLADAQVARASDMVSNTQSYLVRTHLGGILHPGDSVLG 374
Query: 274 YDLHEANQNDIELENYKSLVP---PDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGS 330
Y L N N+ + E+ + VP P+ + +KKSY K + K+R ++ E ++
Sbjct: 375 YHLSGTNFNNPQYEDLERTVPGQIPEVVLVKKSYPRKKKNKNRNWRLKRMAREESDMLPR 434
Query: 331 KCGADREKVNNEYEEFLRDL 350
K D+E+ +YE FLRD+
Sbjct: 435 K--QDQERAERDYEMFLRDV 452
>gi|343425103|emb|CBQ68640.1| probable NMD3-nonsense-mediated mRNA decay protein [Sporisorium
reilianum SRZ2]
Length = 550
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/432 (28%), Positives = 187/432 (43%), Gaps = 122/432 (28%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------- 54
A + V C CG + N +N+C++CL++ VDITES+ K A + C
Sbjct: 7 AAQHMVLCADCGTPITPNNANLCLSCLRNSVDITESVPKQATVNFCRNCERYLNPPNSWV 66
Query: 55 -------------------------------------PKIKLKLTVQKEVLEGVIVEQSD 77
++++KLTVQKEV I++Q
Sbjct: 67 PARLESRELLAICLKKLKGLNKVRLIDAGFIWTEPHSKRLRVKLTVQKEVFTSTILQQ-- 124
Query: 78 VVMSRNITCVNLVPGFMQ-------TGPDHWDAAVQL--------------ELIQKHDAP 116
I V V + Q + W A VQ+ +LI KH+A
Sbjct: 125 ------IFEVEFVVQYGQCPDCTRLAAKNTWRAMVQVRQKVQHKRTFLYLEQLILKHNAH 178
Query: 117 ARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTC 176
I + G++FF++ RSHA+K VEF+ VVP ++ +Q++S + K+T
Sbjct: 179 QNTVSINEKKDGLDFFYTQRSHAIKMVEFLNSVVPIKTTKSEQVISMDVHTSTTNYKFTY 238
Query: 177 SVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS 225
SVEI+ I A LGN+G V+C KVTNS+ +DP +L+ + A++YWR
Sbjct: 239 SVEIAPICKGDLVCLPPKMAKQLGNIGQLVLCHKVTNSLRFIDPISLQIAEVPAEKYWRD 298
Query: 226 PFKALHTSRQLVEYIVLDVK-----------------------------VASTENDTILS 256
AL T +++E++VLD++ + E D +
Sbjct: 299 AQPALATIPEMIEFLVLDIEPTGRYATNSHGVENRRLEEADAQVSPLNATSFGEADAVYH 358
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
TRTHLG +L GD +GY L AN N + + PD + +KKSY E+ +R K
Sbjct: 359 TRTHLGAILQPGDTVMGYHLRVANFNSATWDTIPADRMPDVVLVKKSYPERKKRS--KNR 416
Query: 317 PPKLKPLEMEVD 328
KLK + EV+
Sbjct: 417 MWKLKSMAKEVE 428
>gi|67522509|ref|XP_659315.1| hypothetical protein AN1711.2 [Aspergillus nidulans FGSC A4]
gi|40745675|gb|EAA64831.1| hypothetical protein AN1711.2 [Aspergillus nidulans FGSC A4]
gi|259487052|tpe|CBF85414.1| TPA: nonsense-mediated mRNA decay protein 3 (AFU_orthologue;
AFUA_2G16750) [Aspergillus nidulans FGSC A4]
Length = 511
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/448 (29%), Positives = 201/448 (44%), Gaps = 108/448 (24%)
Query: 3 QAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------- 55
QA G + T+ C CG +V + +C C+K ++DI++ +Q+ A + C
Sbjct: 12 QADGASEIPTTL-CYNCGAPLV--GTTICPDCMKLQIDISQGIQREAVLNFCRDCERWLL 68
Query: 56 --------------------------------------------KIKLKLTVQKEVLEGV 71
+IK+KLT+Q V +GV
Sbjct: 69 PPNSWQVAALESRELLALCLKKLRGLNKIRVIDAGFIWTEPHSRRIKVKLTIQDSVSDGV 128
Query: 72 IVEQSDVVMSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAP 116
I++Q+ V+ I P ++ P+ W A+VQ+ +LI KH A
Sbjct: 129 ILQQTFEVIY--IVMYQQCPECAKSYTPNTWRASVQVRQQVLHKRTFLYLEQLILKHKAH 186
Query: 117 ARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTC 176
IK+ +GI+FFF+ R+HA F++F+ VP + +Q++S + K+T
Sbjct: 187 QNTINIKEAKNGIDFFFAQRNHAEAFIDFLHSAVPVEVTKSQQIISEDIHTSTKSYKFTY 246
Query: 177 SVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS 225
S +I I A LGN+ P ++C ++ SI+ LDP TL+ L++ YWRS
Sbjct: 247 SAKIVPICKDDLVALPIKLAKQLGNISPLLLCNRIGTSISFLDPNTLQSADLNSRIYWRS 306
Query: 226 PFKALHTSRQLVEYIVLDV------------------KVASTENDTILSTRTHLGHLLIL 267
PF +L ++ LVE+IVLDV + + D TRTHLG ++
Sbjct: 307 PFTSLAEAKDLVEFIVLDVEPTGHSRGKWFQSEVTVARASDFSGDKQYFTRTHLGSIIHP 366
Query: 268 GDYAIGYDLHEANQN-----DIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
GD +GY L N N +IE N S PD I +KK Y ++ KH K N KLK
Sbjct: 367 GDSVLGYMLTGTNFNNAQFDEIESSNTYSSTIPDVILVKKFYPRRS--KHTKRN-WKLKR 423
Query: 323 LEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ E D ++E V N++E FLRD+
Sbjct: 424 MATEHDPYLLPNNKESVENDFEMFLRDV 451
>gi|332214638|ref|XP_003256441.1| PREDICTED: 60S ribosomal export protein NMD3 [Nomascus leucogenys]
Length = 503
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENIDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|320037688|gb|EFW19625.1| nonsense-mediated mRNA decay protein [Coccidioides posadasii str.
Silveira]
Length = 526
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 200/449 (44%), Gaps = 120/449 (26%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K +DI+E +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTAAGALCEDCIKLTIDISEGIQREATLHMCKDCERWLQPPSQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+T+Q+EV +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLSKVRIIDASFLWTEPHSKRIKVKITIQQEVFQGTILQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A+VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CPECAKSYT---ANTWRASVQVRQKVPHKRTFLHLEQLILKHGAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ G++FFFS R+HA + V+F+ V P + + +QL+S + K + SVE+
Sbjct: 199 IKEVKDGLDFFFSQRNHAERLVDFLSSVAPVRVKKSQQLISMDVHTSTKSYKISFSVELI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V S+ LLDP TL+ + + YWRSPFK L
Sbjct: 259 PICKDDLVALPIKLAKSLGNISPLTLCYRVGTSVNLLDPNTLQIADIPSPIYWRSPFKNL 318
Query: 231 HTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYA 271
++LVE+IV+D++ VA NDT TRTHLG +L GD
Sbjct: 319 ADVQELVEFIVMDIEPIGHSSGRFYLAEATVARASDLGVNDTTYFTRTHLGGVLHPGDSV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N ND E Y S +P D + +KK Y K + K R +LK L+
Sbjct: 379 MGYHLTGTNFNDENFEALEQSGTYSSTIP-DVVLVKKYYARKKKHKSRNW---RLKRLDR 434
Query: 326 EVDGSKCGADRE----KVNNEYEEFLRDL 350
EV+ + R+ ++ ++E FLRD+
Sbjct: 435 EVEDHPSASSRQQGQDRLEEDFEMFLRDI 463
>gi|327352420|gb|EGE81277.1| nonsense-mediated mRNA decay protein 3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 528
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 201/445 (45%), Gaps = 114/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I +A +C C+K VDI++ +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTISAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQPPSQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+TVQ+E EG I++Q+
Sbjct: 84 TLESRELLALCLRKLRGLGKVRIIDAGFIWTEPHSKRIKVKITVQQEAFEGTILQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + P+ W AAVQ+ +LI KH+A
Sbjct: 144 EYVVASQQ--CSECAKSYT---PNTWRAAVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRG--TKSRNCKCKYT---- 175
IK+ G++FFFS R+HA K V+F+ V P + + ++L+S T +++ K Y+
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKISYSVYLV 258
Query: 176 --CSVEISAIS---AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
C ++ A+ A +LGN+ P +C +V SI+LLDP TL+ + + YWR+PFK +
Sbjct: 259 PICKDDLVALPISLAKSLGNIHPLTLCYRVGTSISLLDPATLQTADIPSPIYWRTPFKGV 318
Query: 231 HTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYA 271
++LVE+IV+D++ A NDT TRTHLG +L +GD
Sbjct: 319 ADVQELVEFIVMDIEPAGRSVGHFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHVGDSV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
GY L +N ND E Y S + PD I ++K Y K + K R ++ E
Sbjct: 379 KGYLLSGSNFNDANYEALEQSHTYSSTI-PDVILVRKHYPRKKKPK-RNWRLKRMNREEE 436
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E S +R++ ++E FLRD+
Sbjct: 437 EAAASSRKQERDRAEEDFEMFLRDV 461
>gi|303314705|ref|XP_003067361.1| 60S ribosomal export protein NMD3 [Coccidioides posadasii C735
delta SOWgp]
gi|240107029|gb|EER25216.1| Nonsense-mediated mRNA decay protein 3, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 526
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 131/449 (29%), Positives = 200/449 (44%), Gaps = 120/449 (26%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K +DI+E +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTAAGALCEDCIKLTIDISEGIQREATLHMCKDCERWLQPPSQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+T+Q+EV +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLSKVRIIDASFLWTEPHSKRIKVKITIQQEVFQGTILQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A+VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CPECAKSYT---ANTWRASVQVRQKVPHKRTFLHLEQLILKHGAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ G++FFFS R+HA + V+F+ V P + + +QL+S + K + SVE+
Sbjct: 199 IKEVKDGLDFFFSQRNHAERLVDFLSSVAPVRVKKSQQLISMDVHTSTKSYKISFSVELI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V S+ LLDP TL+ + + YWRSPFK L
Sbjct: 259 PICKDDLVALPIKLAKSLGNISPLTLCYRVGTSVNLLDPNTLQIADIPSPIYWRSPFKNL 318
Query: 231 HTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYA 271
++LVE+IV+D++ VA NDT TRTHLG +L GD
Sbjct: 319 ADVQELVEFIVMDIEPIGHSSGRFYLAEATVARASDLGVNDTTYFTRTHLGGVLHPGDSV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N ND E Y S +P D + +KK Y K + K R +LK L+
Sbjct: 379 MGYHLTGTNFNDENFEALEQSGTYSSTIP-DVVLVKKYYARKKKHKSRNW---RLKRLDR 434
Query: 326 EVDGSKCGADRE----KVNNEYEEFLRDL 350
EV+ + R+ ++ ++E FLRD+
Sbjct: 435 EVEDHPSASSRQQGQDRLEEDFEMFLRDI 463
>gi|145258982|ref|XP_001402234.1| 60S ribosomal export protein NMD3 [Aspergillus niger CBS 513.88]
gi|134074849|emb|CAK38963.1| unnamed protein product [Aspergillus niger]
gi|350631891|gb|EHA20260.1| hypothetical protein ASPNIDRAFT_214784 [Aspergillus niger ATCC
1015]
Length = 526
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/454 (26%), Positives = 203/454 (44%), Gaps = 117/454 (25%)
Query: 10 VRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------ 55
+ T+ CC CG I ++A +C C+K VDI++ +Q+ A + C
Sbjct: 19 IAATILCCNCGAPIDGTTSAGALCQDCVKLTVDISQGIQREAVLHCCKDCERWLQPPTSW 78
Query: 56 ---------------------------------------KIKLKLTVQKEVLEGVIVEQS 76
+IK+K+T+Q+E +G IV+Q+
Sbjct: 79 VSAALESKELLAHCLRKLRGLSKVRIIDASFIWTEPHSKRIKVKITIQQEAFQGTIVQQT 138
Query: 77 DVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARAT 120
V + ++ C + F + W++++QL ++I KH+A
Sbjct: 139 FEVEYVVASLQCPDCKKSFT---VNTWNSSIQLRQKVPHKRTFLYLEQIILKHNAHRDTI 195
Query: 121 KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI 180
IK+ G++F+F+ R+HA K VEF+ VVP + + ++L+S + K+T S+E+
Sbjct: 196 NIKEAKDGLDFYFAQRNHAEKMVEFLSSVVPTKVKKSQELISMDIHTSTKSYKFTFSIEL 255
Query: 181 SAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
I A +LGN+ P +C +V S+ LLDP TL+ + + YWRSPF++
Sbjct: 256 IPICKDDLVALPIKLARSLGNISPLALCYRVGTSVNLLDPNTLQTADVPTNTYWRSPFRS 315
Query: 230 LHTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILGDY 270
L +L E+I++D+++ ND TRTHLG +L +GD
Sbjct: 316 LADVTELTEFIIMDIELVGRSNGRFYLAEATVARASDLGSNDQTYFTRTHLGGVLHVGDS 375
Query: 271 AIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N ND IE S PD + +KK Y K + K+R ++ LE
Sbjct: 376 VLGYHLTGTNFNDPNFEAIEASGQYSSAIPDVVLVKKFYARKKKNKNRNWRLKRM-ALEY 434
Query: 326 EVDGS---------KCGADREKVNNEYEEFLRDL 350
E + + K A+R ++ ++E FLRD+
Sbjct: 435 EEEAAQQAAGNLNRKQEAERNRLEEDFEMFLRDV 468
>gi|358374389|dbj|GAA90981.1| nonsense-mediated mRNA decay protein 3 [Aspergillus kawachii IFO
4308]
Length = 525
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 122/454 (26%), Positives = 203/454 (44%), Gaps = 117/454 (25%)
Query: 10 VRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------ 55
+ T+ CC CG I ++A +C C+K VDI++ +Q+ A + C
Sbjct: 18 IAATILCCNCGAPIDGTTSAGALCQDCVKLTVDISQGIQREAVLHCCKDCERWLQPPTSW 77
Query: 56 ---------------------------------------KIKLKLTVQKEVLEGVIVEQS 76
+IK+K+T+Q+E +G IV+Q+
Sbjct: 78 VSAALESKELLAHCLRKLRGLSKVRIIDASFIWTEPHSKRIKVKITIQQEAFQGTIVQQT 137
Query: 77 DVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARAT 120
V + ++ C + F + W++++QL ++I KH+A
Sbjct: 138 FEVEYVVASLQCPDCKKSFT---VNTWNSSIQLRQKVPHKRTFLYLEQIILKHNAHRDTI 194
Query: 121 KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI 180
IK+ G++F+F+ R+HA K VEF+ VVP + + ++L+S + K+T S+E+
Sbjct: 195 NIKEAKDGLDFYFAQRNHAEKMVEFLSSVVPTKVKKSQELISMDIHTSTKSYKFTFSIEL 254
Query: 181 SAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
I A +LGN+ P +C +V S+ LLDP TL+ + + YWRSPF++
Sbjct: 255 IPICKDDLVALPIKLARSLGNISPLALCYRVGTSVNLLDPNTLQTADVPTNTYWRSPFRS 314
Query: 230 LHTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILGDY 270
L +L E+I++D+++ ND TRTHLG +L +GD
Sbjct: 315 LADVTELTEFIIMDIELVGRSNGRYYLAEATVARASDLGSNDQTYFTRTHLGGVLHVGDS 374
Query: 271 AIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N ND IE S PD + +KK Y K + K+R ++ LE
Sbjct: 375 VLGYHLTGTNFNDPNFEAIEASGQYSSAIPDVVLVKKFYARKKKNKNRNWRLKRM-ALEY 433
Query: 326 EVDGS---------KCGADREKVNNEYEEFLRDL 350
E + + K A+R ++ ++E FLRD+
Sbjct: 434 EEEAAQQAAGTLNRKQEAERNRLEEDFEMFLRDV 467
>gi|383857986|ref|XP_003704484.1| PREDICTED: 60S ribosomal export protein NMD3-like [Megachile
rotundata]
Length = 504
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/443 (29%), Positives = 195/443 (44%), Gaps = 113/443 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CGI++ N +N CV CL++++DITE++ K A I C
Sbjct: 14 ILCCMCGISIEPNPANTCVACLRTQIDITENVPKQATIHFCKGCERYLQPPSEWIHAALE 73
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMSR 82
++K+KLTVQ EV+ G +++Q +V
Sbjct: 74 SRELLTLCLKKLKSLNRLKLIDAGFVWTEPHSMRLKVKLTVQAEVMNGAVLQQVFIV-EY 132
Query: 83 NITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHG 128
+ D+W A VQ+ +LI K+ A + IK + G
Sbjct: 133 TVNHQMCDDCHRTEAKDYWRALVQVRQRATNKKTFYYLEQLILKYKAHEQTLGIKPIHEG 192
Query: 129 IEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS---- 184
++FFF+ + A K V+F+ V+P + H K+L+S S K+T SVEI IS
Sbjct: 193 LDFFFANEAAARKMVDFLSSVIPCRYDHSKKLISHDIHSNIYNYKFTYSVEIVPISRDSV 252
Query: 185 -------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLV 237
+H LG + + KV+NSI L+D T + ++A YWR PF ++ +QL+
Sbjct: 253 VCLSKKLSHQLGGINSICLVYKVSNSIHLIDVSTGQIAEINATLYWRHPFNSICNPKQLI 312
Query: 238 EYIVLDVK---------------------------VASTE---NDTILSTRTHLGHLLIL 267
EYIV+D++ V S + +D + TRTHLGH+L
Sbjct: 313 EYIVMDIEPIKFKDRKFFPGQGSISSKHIIADVWLVRSCDLGISDNSIHTRTHLGHILKP 372
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +GY L E+N ND E + PD I KKSY + ++ R+ KLK + +
Sbjct: 373 GDTVLGYALGESNINDENFELLNKDLVPDIILTKKSYLQ-DKAARRRMRIWKLKHMVQQD 431
Query: 328 DGSKCGADREKVNNEYEEFLRDL 350
D S NN+Y EFL D+
Sbjct: 432 DNSMMTD-----NNDYYEFLEDI 449
>gi|331243536|ref|XP_003334411.1| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|403161984|ref|XP_003322268.2| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309313401|gb|EFP89992.1| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375172013|gb|EFP77849.2| nonsense-mediated mRNA decay protein 3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 553
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 138/507 (27%), Positives = 218/507 (42%), Gaps = 149/507 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V C CG + N++ CV+CL++ +DIT + K ++ C
Sbjct: 20 VLCADCGTAIEPNSAGRCVSCLRNTIDITAEIPKQNTLSFCRNCSRYLSPPSAWLLAELE 79
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQ-----SD 77
++++KLTVQ+EVL +++Q
Sbjct: 80 SKELLAICLRRLKGLSKVRLVDAGFIWTEPHSKRLRVKLTVQQEVLTSTVLQQIFEVEYV 139
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V ++ C L M W A VQ+ ++I KH+A IK
Sbjct: 140 VQHTQCPACCRLAAKNM------WRALVQIRQKVNHKRTFLYLEQIILKHNADKDTVAIK 193
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++FF++ R HA+K VEF+ + P +S+ +QL+S K+ K+T SVE++ I
Sbjct: 194 ESKDGLDFFYATRQHALKMVEFLNAIAPVRSKSSEQLISADEKNSTANYKFTYSVELAPI 253
Query: 184 SAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
++ GN+ + CT+V SI L+DP TL+ L YW++PF +L +
Sbjct: 254 CKDDIVCLPPKLARAQGNISQLLACTRVGTSIHLVDPITLQFVDLSGVLYWKNPFPSLAS 313
Query: 233 SRQLVEYIVLDVK---------------------VASTEN-DTILSTRTHLGHLLILGDY 270
Q +E++VLD++ V+S+ N D I TRTH+G +L GD
Sbjct: 314 LGQSIEFVVLDIEPTCHPPVTCGRFILADAQVSPVSSSMNDDVIFHTRTHMGGILKPGDT 373
Query: 271 AIGYDLHEANQNDIELENYKSLVP---PDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GY L +N ND +Y +L P P+ I ++K+Y N+RK KP KLK + +E
Sbjct: 374 VRGYHLANSNFND---PSYDALNPSRIPEIILVRKTY--PNRRKKNKPRNWKLKSIAIEA 428
Query: 328 D--------------------GSKCGADREKVNNEYEEFLRDLMASVTDKEDV------- 360
+ K A++ KV EYE FLRDL +++V
Sbjct: 429 NTTAEEHVGLGRGKIDAASKKSGKGTAEQAKVEAEYEMFLRDLEEDPELRQNVQLFKAQP 488
Query: 361 -----PSVPLDYLLADLDSSDKEEGDD 382
P+ +D AD +S + E DD
Sbjct: 489 ASKKLPADAMDLEGADTESVAETEMDD 515
>gi|397521152|ref|XP_003830666.1| PREDICTED: 60S ribosomal export protein NMD3 [Pan paniscus]
Length = 503
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRCRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|380785895|gb|AFE64823.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
gi|383408481|gb|AFH27454.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
gi|384941278|gb|AFI34244.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
Length = 503
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI +
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSTVRDIKRAAGAGMISKKHALGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|355559900|gb|EHH16628.1| hypothetical protein EGK_11941 [Macaca mulatta]
Length = 529
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 210/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI +
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSTVRDIKRAAGAGMISKKHALGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G+++
Sbjct: 484 LEDLHISQDATGEEA 498
>gi|383408479|gb|AFH27453.1| 60S ribosomal export protein NMD3 [Macaca mulatta]
Length = 503
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 132/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI +
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ D +W +PF +L R
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLVDPNTLQVADTDGSTFWSNPFNSLCHLR 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSTVRDIKRAAGAGMISKKHALGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|322778783|gb|EFZ09199.1| hypothetical protein SINV_05229 [Solenopsis invicta]
Length = 497
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 131/448 (29%), Positives = 192/448 (42%), Gaps = 118/448 (26%)
Query: 11 RKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
+ + CC+CG+ + N +NMCV CL++ VDITE + K A I C
Sbjct: 13 KGMILCCECGLLIEPNPANMCVGCLRTHVDITEGIPKQATIQFCKSCERYLQPPADWIHA 72
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
++K+KLTV EVL G +++Q VV
Sbjct: 73 ALESKELLSLCLKKLKGLNRVKLIDASFVWTEPHSKRLKVKLTVHAEVLGGTVLQQVFVV 132
Query: 80 --MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
+ + C + D+W A VQ+ +LI KH A IK
Sbjct: 133 EYVVNHQMCEDC---HRVEAKDYWRACVQVRQRATNKKTFYYLEQLILKHKAHEHTLGIK 189
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++FF++ + A K V+F+ V+P H K+L+S S K+T SVEI +
Sbjct: 190 PIHDGLDFFYANEATARKMVDFLMTVMPCHYNHSKKLISHDCHSNLYNYKFTFSVEIVPL 249
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
S A LG + P + ++TNS+ L+D + + + A YWR+ F ++
Sbjct: 250 SKDSVVCLPRKLAQQLGGISPICLVYRITNSVHLIDFLSGQIAEISATVYWRNNFNSICD 309
Query: 233 SRQLVEYIVLDVK---------------------------VASTE---NDTILSTRTHLG 262
+QL EYIV+D++ V ++E ND TRTHLG
Sbjct: 310 PKQLTEYIVMDIEPIKNKDRKIFPGQGSISNKHIIADAWLVKASELGINDNPTHTRTHLG 369
Query: 263 HLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
H+L GD +GY L E+N ND E + PD + +KK Y N+ RK KLK
Sbjct: 370 HILKPGDSVLGYTLKESNINDTNFEKLSEDLIPDIVLVKKFYNH-NKAARRKARVWKLKH 428
Query: 323 LEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ EV A NNEY EFL +L
Sbjct: 429 ITDEV------ASMSTENNEYNEFLDEL 450
>gi|345796501|ref|XP_545261.3| PREDICTED: 60S ribosomal export protein NMD3 [Canis lupus
familiaris]
Length = 504
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 137/501 (27%), Positives = 214/501 (42%), Gaps = 139/501 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANIT----------------PCP-- 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ PC
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVPCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKRIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ +LI K+ +IK++
Sbjct: 135 IVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRHKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSTIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDLKRSAGAGMISKKHILGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKK+Y ++ +R+ R+ K E+
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKNY-DRTKRQRRR----NWKLKELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 427 DKENMDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDK---EEGDDSMIE 386
L DL S EEG+ M +
Sbjct: 484 LEDLHISQDATGEEGESMMTQ 504
>gi|406868628|gb|EKD21665.1| nonsense-mediated mRNA decay protein 3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 535
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 122/441 (27%), Positives = 200/441 (45%), Gaps = 107/441 (24%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I ++A +C C+K VD+++ +Q+ A + C
Sbjct: 27 TILCCNCGAAIDGTTSAGALCYDCVKLTVDVSQGIQREATLHFCRDCDRWLLPPSSWIVA 86
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
++K+KLT+Q V EGV+++QS V
Sbjct: 87 APESRELLALCLKKLRGLHKVRIIDASFIWTEPHSRRVKVKLTIQDSVSEGVVLQQSFEV 146
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ P ++ + W A VQ+ +LI KH A IK+
Sbjct: 147 --EYVVAYQQCPDCAKSYTANTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDTINIKE 204
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+ G++FF++ R+ A KFV+F+ VVP +S+ ++L+S + K++ SVE+ I
Sbjct: 205 VKDGLDFFYAARNQAEKFVDFLTSVVPVRSKKSQELISMDIHTSTSSYKFSYSVEVVPIC 264
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ P IC ++ ++ LDP TL+ + A YWR+PF +L
Sbjct: 265 KDDLVAIPIKLARSIGNILPLGICHRIGTTVNFLDPSTLQTADVSAPIYWRAPFTSLADV 324
Query: 234 RQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGY 274
++LVE+IV+D+++ + ND TRTHLG++L GD +GY
Sbjct: 325 QELVEFIVMDIELLGPQKGRWALAEATVARASDLGRNDKTYYTRTHLGNVLHPGDSVMGY 384
Query: 275 DLHEANQND-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
L N N +E N S PD + +KK Y K + K+R ++ E EV
Sbjct: 385 QLTGTNFNSPQFDALEESNTYSSQIPDVMLVKKFYARKKKSKNRNWRLKRMNKEEGEVLP 444
Query: 330 SKCGADREKVNNEYEEFLRDL 350
K AD+++++ +YE FLRD+
Sbjct: 445 KK--ADQDRMDKDYEMFLRDV 463
>gi|402861061|ref|XP_003894927.1| PREDICTED: 60S ribosomal export protein NMD3 [Papio anubis]
Length = 503
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI +
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDIKRTAGAGMISKKHALGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|66559176|ref|XP_624393.1| PREDICTED: 60S ribosomal export protein NMD3 [Apis mellifera]
Length = 503
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 130/446 (29%), Positives = 194/446 (43%), Gaps = 114/446 (25%)
Query: 11 RKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
+ + CC CGI++ N +NMCV CL+++VD+TE++ K A I C
Sbjct: 11 KSMILCCICGISIEPNPANMCVACLRTQVDVTENIPKQATIHFCKGCERYLQPPGEWIHA 70
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
++K+KLTVQ EV+ G +++Q +V
Sbjct: 71 ALESRELLTLCLKKLKGLNRVKLIDAGFVWTEPHSMRLKVKLTVQAEVIGGAVLQQVFIV 130
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
I D+W A VQ+ +LI K+ A + IK +
Sbjct: 131 -EYTINHQMCNDCHRTEAKDYWRALVQVRQRATNKKTFYYLEQLILKYKAHEQTLGIKPI 189
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++FFF+ + A K V+F+ V+P + H K+L+S S K+T SVEI IS
Sbjct: 190 HEGLDFFFANEATARKMVDFLSSVIPCRYDHSKKLISHDIHSNIYNYKFTYSVEIVPISR 249
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
+H LG + + K+TN I L+D + + L+A YWR F ++ +
Sbjct: 250 DSIVCLPRKLSHQLGGINSICLVYKITNFIHLIDVSSGQIAELNASLYWRHAFNSICDPK 309
Query: 235 QLVEYIVLDVK---------------------------VASTE---NDTILSTRTHLGHL 264
QL+EY V+D++ V S + ND ++ TRTHLGH+
Sbjct: 310 QLIEYTVMDIEQIKFKDRKFFPGQGTISDKHVIADVWLVKSCDLGINDNLIHTRTHLGHV 369
Query: 265 LILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE 324
L GD A+GY L+++N ND E + PD I KK+Y + R N KLK
Sbjct: 370 LKPGDTALGYALNDSNINDKNFEILNKDLVPDIILTKKNYTNDRAARRRMRN-WKLK--H 426
Query: 325 MEVDGSKCGADREKVNNEYEEFLRDL 350
M D D NN+Y EFL D+
Sbjct: 427 MLSDKDNMTTD----NNDYYEFLEDI 448
>gi|380018901|ref|XP_003693357.1| PREDICTED: 60S ribosomal export protein NMD3-like [Apis florea]
Length = 502
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 195/444 (43%), Gaps = 116/444 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CGI++ N +NMCV CL+++VD+TE++ K A I C
Sbjct: 13 ILCCICGISIEPNPANMCVACLRTQVDVTENIPKQATIHFCKGCERYLQPPGEWIHAALE 72
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-MS 81
++K+KLTVQ EV+ G +++Q +V +
Sbjct: 73 SRELLTLCLKKLKGLNRVKLIDAGFVWTEPHSMRLKVKLTVQAEVIGGAVLQQVFIVEYT 132
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
N N D+W A VQ+ +LI KH A IK +
Sbjct: 133 INHQMCN--DCHRTEAKDYWRALVQVRQRATNKKTFYYLEQLILKHKAHEHTLGIKAIHE 190
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++FFF+ + A K V+F+ V+P + H K+L+S S K+T SVEI IS
Sbjct: 191 GLDFFFANEATARKMVDFLSSVIPCRYDHSKKLISHDIHSNIYNYKFTYSVEIVPISRDS 250
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
+H LG + + K+TN I L+D + + L+A YWR F ++ +QL
Sbjct: 251 VVCLPRKLSHQLGGINSICLVYKITNFIHLIDVSSGQVAELNASLYWRHAFNSICDPKQL 310
Query: 237 VEYIVLDVK---------------------------VASTE---NDTILSTRTHLGHLLI 266
+EY V+D++ V S + ND ++ TRTHLGH+L
Sbjct: 311 IEYTVMDIEQIKFKDRKFFPGQGTISDKHIIADVWLVRSCDLGINDNLIHTRTHLGHILK 370
Query: 267 LGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME 326
GD A+GY L+++N ND E + PD I KK+Y ++ R+ KLK M
Sbjct: 371 PGDTALGYALNDSNINDKNFEILNKDLIPDIILTKKNYT-NDRATRRRIRTWKLK--HML 427
Query: 327 VDGSKCGADREKVNNEYEEFLRDL 350
D D NN+Y EFL D+
Sbjct: 428 PDKDNMTTD----NNDYYEFLEDI 447
>gi|432117229|gb|ELK37659.1| 60S ribosomal export protein NMD3 [Myotis davidii]
Length = 503
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 134/495 (27%), Positives = 210/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 15 ILCCECGVVISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLTVQKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ +LI K+ +IK++
Sbjct: 135 VVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T S+EI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSMEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADVDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDLKRKAGAGMISKKHTLGEVWVQKTSEMDTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK E+
Sbjct: 372 GDLVLGFDLANCNINDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLK--ELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 427 DKENMDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|363752964|ref|XP_003646698.1| hypothetical protein Ecym_5097 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890334|gb|AET39881.1| hypothetical protein Ecym_5097 [Eremothecium cymbalariae
DBVPG#7215]
Length = 509
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 134/487 (27%), Positives = 210/487 (43%), Gaps = 131/487 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S MC C+K VDITE + + AN++ C
Sbjct: 17 TVLCCNCGVPMDGSTGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPGQWIRAE 76
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 77 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRIKLTVQGEAMANTIIQQTFEVE 136
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A +Q+ +LI KH+A I +
Sbjct: 137 YIVVAMQCPDCARSY---TANTWRANIQIRQKVPHKRTFLYLEQLILKHNAHVDTVSISE 193
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++F++S ++HAVK ++F+ VVP +++ ++L+S+ T + K++ SVEI I
Sbjct: 194 AKDGLDFYYSQKNHAVKMLDFLNSVVPVKTKKSEELISQDTHTGASTYKFSYSVEIVPIC 253
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ FVIC+KVTN++ LDP TL+ L A YWR+PF +L
Sbjct: 254 RDDLVVLPKKLAKSMGNISQFVICSKVTNALQFLDPQTLQTAELTASVYWRNPFMSLADV 313
Query: 234 RQLVEYIVL---------------DVKVASTE----NDTILSTRTHLGHLLILGDYAIGY 274
QL+E+IVL D+ VA ND R+HLG + GD +GY
Sbjct: 314 SQLIEFIVLEVEPTGYVNGKRVLADITVARASDMGVNDQTYYVRSHLGAICHPGDSVMGY 373
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGS---- 330
+ +N N ++ PD + +KK Y K RK+R ++ ++D S
Sbjct: 374 FIANSNYNSDLFDSLNFDRIPDIVLVKKQYIRKT-RKNRHWKLKRMAKEHKDIDASNDYS 432
Query: 331 -KCGADREKVNNEYEEFLRDL-----------------------MASVTDKEDVPSVPLD 366
+ D E+ +YE FL++L MA D ED P + +D
Sbjct: 433 RQQKVDMERAERDYELFLQELEEDEEMRQTINLYKNQKPVQEEEMADSED-EDAPQINID 491
Query: 367 YLLADLD 373
LL +LD
Sbjct: 492 ELLDELD 498
>gi|195398697|ref|XP_002057957.1| GJ15765 [Drosophila virilis]
gi|194150381|gb|EDW66065.1| GJ15765 [Drosophila virilis]
Length = 525
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 137/501 (27%), Positives = 210/501 (41%), Gaps = 144/501 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC+CG+ + N +NMCVTCL++ VDITE++ K A + C
Sbjct: 25 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWVQASLE 84
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--M 80
+IK+KLTV E+ G +++Q +V
Sbjct: 85 SRELLAVCLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEISGGTVLQQVFIVEFT 144
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+N C + D W VQ+ +LI K+ A IK
Sbjct: 145 VQNQMCTDC---HRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKYKAHENTLGIKPEH 201
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA- 185
G++F++ +HA + V+F+ +VPA+ K+L+S S N KY+ SVEI+ +S
Sbjct: 202 GGLDFYYVSENHARRMVDFLQTMVPAKVTTSKRLISHDIHSNNYNYKYSWSVEIAPVSKD 261
Query: 186 ----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
LGN+ P + +V+++I L+DP T + L Y+R+PF+A+ +Q
Sbjct: 262 SAVCISKKLRQQLGNISPVCLVNRVSSNIHLIDPLTGQIAELTTQVYFRAPFEAICNPKQ 321
Query: 236 LVEYIVLDVKVASTE------------------------------NDTILSTRTHLGHLL 265
LVEY+V+D+ V + ND + TR+HLGHLL
Sbjct: 322 LVEYVVMDIDVIHEKDRKCYPGQGMLSNKHALCDVWVVRTSELGINDNPIHTRSHLGHLL 381
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GD +GY+ EAN ND E + S + PD I ++K Y + + R K+K L
Sbjct: 382 KVGDSVMGYNTGEANINDPEFDKLPSHLIPDVILVRKHYDRQTRLSQRL---WKIKHLAD 438
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL---------------------MASVTDKEDVPSVP 364
E E+ +Y EFL D+ + DVP +
Sbjct: 439 E-------KTDERSKYDYHEFLDDIEENPDIRGHINIYRDSKKPLPIEVQPSAGDVPQIT 491
Query: 365 LDYLLAD--LDSSDKEEGDDS 383
L +L D LD +D E GD S
Sbjct: 492 LAEMLEDMTLDCADDEMGDLS 512
>gi|340521691|gb|EGR51925.1| predicted protein [Trichoderma reesei QM6a]
Length = 515
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 189/396 (47%), Gaps = 83/396 (20%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSD--VVMSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
++K+KLTVQ V +GV+++QS V + + C F P+HW A VQ+
Sbjct: 119 RVKVKLTVQDAVQQGVLLQQSFEVVYVVAHQQCPECAKSFT---PNHWRACVQVRQKVLH 175
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+L+ KH A IK+ GI+FFFS R+ A KFV+F+ VVP + + ++
Sbjct: 176 KRTFHFLEQLVLKHGAHRETLNIKEAKDGIDFFFSVRNQAEKFVDFLNSVVPVKVKSSQE 235
Query: 160 LVSRGTKSRNCKCKYTCSVEISAISAHNL-----------GNLGPFVICTKVTNSIALLD 208
L+S T + K+T S E+ + +L GN+ P V+C K+ ++ L+D
Sbjct: 236 LISMDTHTSKKSYKFTFSAELVPVCRDDLVALPIKLAKQSGNISPLVLCHKIGTAVYLMD 295
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE------------------ 250
P TL+ + + YWR+PF AL + +LVE+I++D++ T
Sbjct: 296 PQTLQTAEVSSSIYWRAPFTALADAMELVEFIIMDIEPTPTRKGKWVLAEATVARASDLG 355
Query: 251 -NDTILSTRTHLGHLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSY 304
ND TRTHLG+LL GD A+GY L N N+ IE N S PD + +KK Y
Sbjct: 356 VNDKTYFTRTHLGNLLQPGDSAMGYMLSGTNFNNPEFDAIEESNTYSSTVPDVVLVKKHY 415
Query: 305 KEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL-------------- 350
+ + + R ++ E ++ K AD+E+++ EYE FLRD+
Sbjct: 416 PNRRRNRRRNWKLKRMNKDEGDLLPKK--ADQERMDKEYEMFLRDVEEDEELRAALALYK 473
Query: 351 -----------MASVTDKED--VPSVPLDYLLADLD 373
+A D E+ VP V +D LL D D
Sbjct: 474 NPKKTNDEEMSIAETEDDEEDGVPGVNMDELLDDFD 509
>gi|258566858|ref|XP_002584173.1| nonsense-mediated mRNA decay protein 3 [Uncinocarpus reesii 1704]
gi|237905619|gb|EEP80020.1| nonsense-mediated mRNA decay protein 3 [Uncinocarpus reesii 1704]
Length = 533
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 202/451 (44%), Gaps = 124/451 (27%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K +DI+E +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTAAGALCEDCIKLTIDISEGIQREATLHMCKDCERWLQPPSQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+T+Q+E L+G I++Q+
Sbjct: 84 SLESRELLALCLRKLRGLSKVRIIDASFLWTEPHSKRIKVKITIQQEALQGTILQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A+VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CPECAKSYT---ANTWRASVQVRQKVPHKRTFLHLEQLILKHGAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ G++FFFS R+HA K V+F+ V P + + +QL+S + K + SVE+
Sbjct: 199 IKEVKDGLDFFFSQRNHAEKLVDFLSSVAPVRVKKSQQLISMDIHTSTKSYKISFSVELI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V S+ LLDP TL+ + A YWRSPFK +
Sbjct: 259 PICKDDLVALPIKLARSLGNISPLTLCYRVGTSVNLLDPNTLQTADVPAPIYWRSPFKNI 318
Query: 231 HTSRQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHLLILGDYA 271
++LVE+IV+D++ VA NDT TRTHLG +L GD
Sbjct: 319 ADVQELVEFIVMDIEPIGQSSGRFYLAEATVARASDLGSNDTTYFTRTHLGGVLHPGDSV 378
Query: 272 IGYDLHEANQNDIELENYKSL--------VPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
+GY + N ND ENY++L + PD + +KK Y K + K R +LK L
Sbjct: 379 MGYHITGTNFND---ENYEALEQNSTYSSMIPDVVLVKKHYPRKKKNKARN---WRLKRL 432
Query: 324 EMEVDGSKCGADREKVNNEYEE----FLRDL 350
+ + + ++R++ N EE FLRD+
Sbjct: 433 DRDEEEPSSSSNRQQNQNRLEEDFELFLRDI 463
>gi|365984817|ref|XP_003669241.1| hypothetical protein NDAI_0C03380 [Naumovozyma dairenensis CBS 421]
gi|343768009|emb|CCD23998.1| hypothetical protein NDAI_0C03380 [Naumovozyma dairenensis CBS 421]
Length = 538
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 200/447 (44%), Gaps = 118/447 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG + S MC C+K VDITE + + ANI+ C
Sbjct: 30 TVLCCNCGTPIDGSTGLVMCYDCIKMTVDITEGIPREANISFCRNCERFLQPPGQWIRAD 89
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++KLTVQ E + I++Q+
Sbjct: 90 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMSNTIIQQTFEVE 149
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI +H+A I
Sbjct: 150 YVVIA--MQCPDCARSYTT---NTWRATVQIRQKVPHKRTFLYLEQLILRHNAHVDTISI 204
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
+ G++FF+S ++HAVK ++F+ VVP +S+ ++L+S+ T + + K++ SVEI
Sbjct: 205 SEAKDGLDFFYSQKNHAVKMIDFLNSVVPIKSKKSEELISQDTHTGSSTYKFSYSVEIVP 264
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I A +LGN+ FV+C+K++N++ LDP TL+ L YWRSPF AL
Sbjct: 265 ICRDDLVVLPKKLAKHLGNISQFVLCSKISNTVQFLDPTTLQTADLSPSLYWRSPFSALA 324
Query: 232 TSRQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAI 272
QL ++IVLDV +A T ND + R+HLG +L GD
Sbjct: 325 DVSQLTDFIVLDVDPTGISKGKRILADITIARTADLGINDQVYYARSHLGAILHAGDTVA 384
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDG 329
GY + +N N + PD + +KK Y QRK +K KLK + E +D
Sbjct: 385 GYFIANSNYNSELFDGLNIDYVPDVVLVKKLY----QRKTKKNRNWKLKRMAKEHKDIDA 440
Query: 330 SKCGA------DREKVNNEYEEFLRDL 350
++ + D E+ +YE FL++L
Sbjct: 441 AQDYSSKAQKQDMERAEKDYELFLQEL 467
>gi|426218020|ref|XP_004003248.1| PREDICTED: 60S ribosomal export protein NMD3 [Ovis aries]
Length = 503
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 138/499 (27%), Positives = 207/499 (41%), Gaps = 144/499 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + N +N+CV CL+S+VDI++ + K I+ C
Sbjct: 15 ILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVFISFCKQCQRYFQPPATWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ +LI K+ +IK++
Sbjct: 135 VVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT+ I L+DP TL+ +D + +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDIKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + KS PD + IKKSY +++ R KLK L
Sbjct: 372 GDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRSKRQRRRN---WKLKEL---- 424
Query: 328 DGSKCGADREKVNN----EYEEFLRDL-------------------MASVTDKEDVPSVP 364
DRE V+ +Y++FL DL + S TD E P V
Sbjct: 425 -----ARDRENVDTDDERQYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRVS 479
Query: 365 LDYLLADLDSSDKEEGDDS 383
L +L DL S G +
Sbjct: 480 LAEMLEDLHISQDATGGEG 498
>gi|355707455|gb|AES02963.1| NMD3-like protein [Mustela putorius furo]
Length = 503
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 136/499 (27%), Positives = 212/499 (42%), Gaps = 139/499 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ +LI K+ +IK++
Sbjct: 135 VVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP +++ ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRNKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLPPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKK+Y +++ R KLK E+
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKNYDRTKRQRRRN---WKLK--ELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 427 DRENMDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDK---EEGDDSM 384
L DL S EEG+ M
Sbjct: 484 LEDLHISQDATGEEGESMM 502
>gi|301792240|ref|XP_002931087.1| PREDICTED: 60S ribosomal export protein NMD3-like [Ailuropoda
melanoleuca]
Length = 504
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 214/501 (42%), Gaps = 139/501 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPATWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ +LI K+ +IK++
Sbjct: 135 VVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRQKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSVVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKK+Y ++ +R+ R+ K E+
Sbjct: 372 GDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKNY-DRTKRQRRR----NWKLKELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD+E P + L +
Sbjct: 427 DRENMDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDATIPVESDTDEEGAPRISLAEM 483
Query: 369 LADLDSSDK---EEGDDSMIE 386
L DL S EEG+ M +
Sbjct: 484 LEDLHISQDATGEEGESMMTQ 504
>gi|384495175|gb|EIE85666.1| hypothetical protein RO3G_10376 [Rhizopus delemar RA 99-880]
Length = 478
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 128/422 (30%), Positives = 188/422 (44%), Gaps = 109/422 (25%)
Query: 30 MCVTCLKSEVDITESLQKHANITPC----------------------------------- 54
MCV C+++EVDITE + KHA + C
Sbjct: 1 MCVNCIRNEVDITEGIPKHATLHFCRNCERYLQPPGIWVAAQLESRELLTLCLKKLKGLN 60
Query: 55 ----------------PKIKLKLTVQKEVLEGVIVEQ----SDVVMSRNIT-CVNLVPGF 93
++K+KLT+QKEV I++Q VV S+ C L
Sbjct: 61 KVRLVDAGFIWTEPHSKRVKVKLTIQKEVFANTILQQIFEVEFVVSSQQCEECTRL---- 116
Query: 94 MQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHA 139
+ W A VQ+ +LI KH+A T IK+ GI+F++ R+ A
Sbjct: 117 --AAQNTWKAVVQVRQKVEHKRTFLFLEQLILKHNAHKDTTNIKEAKDGIDFYYGSRNQA 174
Query: 140 VKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNL 188
+K VEF+ VVP + + +QL+S+ + K+T S EI I A+N
Sbjct: 175 IKMVEFLSAVVPMRYKTSEQLISKDIHTSVSNYKFTYSAEIVPICRDDLVCIPKKLANNF 234
Query: 189 GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK--- 245
GN+ +ICT+++NSI LLD TL + QY+R PF AL +++ +VE+ VLDV+
Sbjct: 235 GNINRLLICTRISNSIHLLDVNTLATADVSTTQYYRQPFIALGSAKSMVEFYVLDVEPLG 294
Query: 246 ------------VAST----ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENY 289
VA ND R+HLG L GD +GYDL AN N+ E +
Sbjct: 295 PVDGKKILCDVHVARMSDFGRNDEEFIARSHLGAFLNPGDTVMGYDLTRANFNNDEFDQL 354
Query: 290 KSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGS-KCGADREKVNNEYEEFLR 348
PD + ++KSY + +K K KL+ L EVD D+ ++ N+ E F+R
Sbjct: 355 SQTELPDVVLVRKSYPAR--KKKSKQRNWKLQQLGKEVDEMLPRKQDQARIENDMELFMR 412
Query: 349 DL 350
D+
Sbjct: 413 DI 414
>gi|281344425|gb|EFB20009.1| hypothetical protein PANDA_021824 [Ailuropoda melanoleuca]
Length = 488
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 136/497 (27%), Positives = 211/497 (42%), Gaps = 139/497 (27%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------------- 55
CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 2 CCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPATWIQCALESR 61
Query: 56 --------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--MS 81
++K+KLT+QKEV+ G I++Q VV +
Sbjct: 62 ELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDYVV 121
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
+ C + D W A VQ+ +LI K+ +IK++
Sbjct: 122 QPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHD 178
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 179 GLDFYYSSKQHAQKMVEFLQCTVPCRQKASQRLISQDIHSNTYNYKSTFSVEIVPICKDN 238
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +QL
Sbjct: 239 VVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQL 298
Query: 237 VEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLILGD 269
E+IV++ K + D RTHLGHLL GD
Sbjct: 299 EEFIVMECSVVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNPGD 358
Query: 270 YAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
+G+DL N ND + S PD + IKK+Y +++ R KLK E+ D
Sbjct: 359 LVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKNYDRTKRQRRRN---WKLK--ELARDR 413
Query: 330 SKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYLLA 370
D E+ +Y++FL DL + S TD+E P + L +L
Sbjct: 414 ENMDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDATIPVESDTDEEGAPRISLAEMLE 470
Query: 371 DLDSSDK---EEGDDSM 384
DL S EEG+ M
Sbjct: 471 DLHISQDATGEEGESMM 487
>gi|260945473|ref|XP_002617034.1| hypothetical protein CLUG_02478 [Clavispora lusitaniae ATCC 42720]
gi|238848888|gb|EEQ38352.1| hypothetical protein CLUG_02478 [Clavispora lusitaniae ATCC 42720]
Length = 506
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 129/443 (29%), Positives = 200/443 (45%), Gaps = 110/443 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S+ MC C+K VDITE + + ANI+ C
Sbjct: 16 TVLCCNCGVPMDGSSGLVMCYDCIKLNVDITEGIPREANISFCRNCERFLQPPQQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++KLTVQ E ++ IV+Q+
Sbjct: 76 LESRELLAICLRRLKGLSKVRLIDASFIWTEPHSRRIRVKLTVQGEAMQNTIVQQTFEVE 135
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + F + W A VQ+ +LI KH+A I
Sbjct: 136 YVVIA--MQCPDCAKSFT---ANTWRATVQIRQKVAHKRTFLYLEQLILKHNAHQDTISI 190
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++FF+S R+HA K ++F+ V P +S+ ++L+S T+S + K++ SVEI+
Sbjct: 191 QETKDGLDFFYSQRNHATKMLDFLNAVAPIKSKRSEELISIDTQSGSSSYKFSFSVEIAP 250
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I A+ LGN+ VIC+KV+N + LDP TL+ L A YWR+PF +L
Sbjct: 251 ICRDDLVVLPRKLANQLGNIPRLVICSKVSNMLQFLDPNTLQTADLQAGVYWRAPFFSLL 310
Query: 232 TSRQLVEYIVLDVKVAS-------------------TENDTILSTRTHLGHLLILGDYAI 272
QLVE+IVLDV+ ND R+HLG +L GD +
Sbjct: 311 DVTQLVEFIVLDVEPTGDVKGKHVLADITVSRASDFGVNDNTFYVRSHLGGILHPGDSCM 370
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR-KHRKPNPPKLKPLEMEV---- 327
GY L N N + + P+ + IKK Y K+++ K+R ++ E+
Sbjct: 371 GYYLTNTNFNSDLWDTLDTDNCPEVVLIKKHYVRKSKKSKYRNWKLKRMAREHNEIMANE 430
Query: 328 DGSKCGADREKVNNEYEEFLRDL 350
D + ++E+ +YE FL++L
Sbjct: 431 DSRQAKQEQERAERDYELFLQEL 453
>gi|351712585|gb|EHB15504.1| 60S ribosomal export protein NMD3, partial [Heterocephalus glaber]
Length = 497
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 132/494 (26%), Positives = 210/494 (42%), Gaps = 136/494 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SKELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A VQ+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGVHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S + T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYRSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +++++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRISSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDLKRSAGAGVISKKHTLGEVWVQKTSEMDTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK E+
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDKVPDVVLIKKSYDRTKRQRRRN---WKLK--ELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 427 DRENMDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDD 382
L DL S G +
Sbjct: 484 LEDLHISQDATGQE 497
>gi|171676746|ref|XP_001903325.1| hypothetical protein [Podospora anserina S mat+]
gi|170936440|emb|CAP61097.1| unnamed protein product [Podospora anserina S mat+]
Length = 606
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 132/454 (29%), Positives = 202/454 (44%), Gaps = 109/454 (24%)
Query: 1 MVQAAGIFAVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--- 55
M G T+ CC CG I S+A MC C+K VDI++++ + A+I C
Sbjct: 99 MAPMLGTARTGATILCCNCGSPIDGTSSAGAMCYDCIKLTVDISKTIPREAHIQFCRDCD 158
Query: 56 ------------------------------------------------KIKLKLTVQKEV 67
+IK+K+T+Q V
Sbjct: 159 RWLMPPNTWVNAAPESKELLALCLKRLRNITKVRIVNAEFIWTEPHSRRIKVKITIQDSV 218
Query: 68 LEGVIVEQSD--VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQ 111
+GV+++QS V + C + + + W A+VQ+ +LI
Sbjct: 219 ADGVLMQQSFEVVYVVGTQQCKDCAKSYTA---NVWRASVQVRQKVPHKRTFLLLEQLIL 275
Query: 112 KHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCK 171
KH A IK+ GI+F+F+ R+ A F+ F+ V+P + +QL+S+ + +
Sbjct: 276 KHQAHRDTINIKEEKGGIDFYFAHRNQAEAFLSFLKSVIPIFVKDSRQLISQDNHTGDKS 335
Query: 172 CKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDAD 220
K+ SVEI I A ++GN+ P V+C ++ S+ LLDP TL+ + +D
Sbjct: 336 YKFNYSVEIVPICRDDLVALPLKLARSIGNITPLVLCHRIGTSVNLLDPNTLQTAEISSD 395
Query: 221 QYWRSPFKALHTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHL 261
+WR+PF+ L + LVE+IV+DV+ + ND TRTHL
Sbjct: 396 VFWRAPFQPLAGTPDLVEFIVMDVEPTNVRKGKWVLSEVQVARAADLGVNDHTYFTRTHL 455
Query: 262 GHLLILGDYAIGYDLHEANQNDIEL---ENYKSL--VPPDTIKIKKSYKEKNQRKHRKPN 316
G+LL GD +GY L N N L EN ++ PD I +KK Y N+RK+RK N
Sbjct: 456 GNLLHAGDSVLGYMLSGTNFNSSALDAIENSRAFGSTIPDVILVKKHY--PNRRKNRKRN 513
Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ + E + AD+EK+ EYE FLRD+
Sbjct: 514 WKLKRMAKDEGELLPKAADQEKMEAEYEMFLRDV 547
>gi|47224987|emb|CAF97402.1| unnamed protein product [Tetraodon nigroviridis]
Length = 513
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 142/510 (27%), Positives = 212/510 (41%), Gaps = 148/510 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + N +NMCV CL+++VDI+E + K + C
Sbjct: 15 ILCCTCGVPIPPNPANMCVACLRTQVDISEGIPKQVTVHFCKQCERYLQPPATWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKE---------VLEGVI 72
+IK+K+T+QKE VL G I
Sbjct: 75 SRELLSLCLKKIKSSMTKVRLIDAGFLWTEPHSKRIKMKVTIQKEGILMTVSLQVLNGAI 134
Query: 73 VEQSDVVMSR--NITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAP 116
++Q VV N C + D W A VQ+ +LI KH
Sbjct: 135 LQQVFVVEFVVQNQMCDDC---HRVEAKDFWKAVVQVRQKTSHKKTFYYLEQLILKHKLH 191
Query: 117 ARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTC 176
+ A IK++ GI+F++ + HA K V+F+ VP +S+ ++L+S S K T
Sbjct: 192 SNALNIKEIHDGIDFYYGLKQHAQKMVDFLQCTVPCRSKASQRLISHDIHSNTYNYKSTF 251
Query: 177 SVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS 225
SVEI + A +LGN+G +C +VT++I L+DP TL+ +D + YWR+
Sbjct: 252 SVEIVPVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSTIHLIDPATLQIAEVDGNTYWRN 311
Query: 226 PFKALHTSRQLVEYIVLDVKV-------------------------ASTENDTI--LSTR 258
PF +L RQL E+IV+D+ + ++E DT R
Sbjct: 312 PFNSLCNPRQLEEFIVMDIDIIRDQKLGAGAGTRSSRHTLAEVWVQKTSEMDTSQQYHCR 371
Query: 259 THLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPP 318
T LGHLL +GD +G+D +N ND L PD + IKK Y + K R
Sbjct: 372 TFLGHLLNIGDLVLGFDFANSNINDEHLNKMNPHHIPDVVLIKKGYDRARRVKRR----- 426
Query: 319 KLKPLEMEVDGSKCGADREKVNNEYEEFLRDL--------------------MASVTDKE 358
K EM D D E+ +Y++FL DL + S TD +
Sbjct: 427 NWKLQEMARDREGMDTDDER---QYQDFLEDLEEDEALRKNVNIFRDASKIPVESDTDDD 483
Query: 359 DVPSVPLDYLLADLDSSDK--EEGDDSMIE 386
P + L +L +L +D EEG D + +
Sbjct: 484 GAPQISLAEMLEELSLTDATGEEGADMLTD 513
>gi|341901748|gb|EGT57683.1| hypothetical protein CAEBREN_18901 [Caenorhabditis brenneri]
Length = 511
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 126/455 (27%), Positives = 195/455 (42%), Gaps = 112/455 (24%)
Query: 2 VQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
+Q+ I ++CC+CG+ + N +NMC CL+S VDITE +Q+ I C
Sbjct: 1 MQSLNITPTVGLIACCECGVAIEPNPANMCSGCLRSRVDITEGIQRSCTIYMCKFCDRYF 60
Query: 56 ----------------------------------------------KIKLKLTVQKEVLE 69
+IK+K+T+QKEV
Sbjct: 61 VPPSAWMRAELESKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFT 120
Query: 70 GVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDA 115
I++Q+ VV+ + D W A VQ+ +L+ KH A
Sbjct: 121 NTILQQA-VVVEFTVHSQLCDDCRRAEAKDFWRACVQVRQRAEFKKTLFYLEQLLLKHSA 179
Query: 116 PARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT 175
T +K + GI+FFF+ + A KFV+F+ V+P + + ++LVS TK+ K+T
Sbjct: 180 HKDCTGVKPVPTGIDFFFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHT 239
Query: 176 CSVEISAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR 224
VEI I N+ GN+ V+C +V+N I L+DP L+ + A +WR
Sbjct: 240 FCVEIVPICRDNIVCLPKKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWR 299
Query: 225 SPFKALHTSRQLVEYIVLDVK----------------------VASTENDTI-------L 255
PF +L +QL E+ VLDV+ V +D + L
Sbjct: 300 EPFDSLCGPKQLTEFYVLDVEPVENLQRSAGHGYVSKKHELADVWLVRSDQVGMSDAQSL 359
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
S RTHLGHLL GD + +D+ N N+ + PD I ++K + + R+
Sbjct: 360 SARTHLGHLLSPGDLVMAFDMKNCNVNNATFDAMNIDNVPDAIIVRKVFDRSRRTAKRQ- 418
Query: 316 NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
KLK L VDG+ G + V +E++ F+ D+
Sbjct: 419 --WKLKRL--VVDGNIVGNETASVADEFQGFMEDI 449
>gi|295661717|ref|XP_002791413.1| 60S ribosomal export protein NMD3 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279970|gb|EEH35536.1| nonsense-mediated mRNA decay protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 527
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 130/448 (29%), Positives = 196/448 (43%), Gaps = 120/448 (26%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K VDI++ +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTNAAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQPPNQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+TVQ+E +G I++Q+
Sbjct: 84 AIESRELLALCLRKLRGLGKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTIMQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + P+ W A+VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CSECAKSYT---PNTWRASVQVRQKVPHKRTFLYLEQLILKHSAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+ G++FFFS R+HA K V+F+ V P + + ++L+S + K T SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKLVDFLSSVAPVRVKKSQELISVDVHTSTKSFKITFSVYLI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +L N+ P +C +V SI LLDP TLR + + YWR+PFK L
Sbjct: 259 PICKDDLVALPLSLAKSLSNIHPLTLCYRVGTSIGLLDPATLRTADIPSPVYWRTPFKNL 318
Query: 231 HTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILGDYA 271
R+LVE+IV+D++ A NDT TRTHLG +L +GD
Sbjct: 319 ADVRELVEFIVMDIEPAGKSVGHFHLAEATVARASDLGSNDTTYFTRTHLGGVLRVGDSV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L +N ND E Y S + PD + +KK Y K + K +LK L
Sbjct: 379 LGYLLTGSNFNDSNFEALERSGTYNSTI-PDVVLVKKHYPRKKKAKRNW----RLKRLNR 433
Query: 326 EVDGSKCGADREK---VNNEYEEFLRDL 350
E + + A +++ + ++E FLRD+
Sbjct: 434 EEEAATASARKQEKDLLEEDFEMFLRDV 461
>gi|294660124|ref|XP_462561.2| 60S ribosomal export protein NMD3 [Debaryomyces hansenii CBS767]
gi|199434479|emb|CAG91072.2| DEHA2G23496p [Debaryomyces hansenii CBS767]
Length = 517
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 199/441 (45%), Gaps = 106/441 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S+ MC C+K VDITE + + AN++ C
Sbjct: 19 TVLCCNCGVPMDGSSGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPQHWIKAE 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + IV+Q+ V
Sbjct: 79 LESRELLALCLRRLKGLNKVRLIDASFIWTEPHSRRIRVKLTVQGEAMSNTIVQQTFEVE 138
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A IK+
Sbjct: 139 YVVVAMQCPDCAKSYT---ANTWRATVQIRQKVPHKRTFLYLEQLILKHNAHMDTVSIKE 195
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF+ ++HAVK ++F+ V P +S+ ++LVS S + K++ SVEI+ +
Sbjct: 196 SRDGLDFFYGQKNHAVKMLDFLSAVAPIKSKKSEELVSTDIHSASSSYKFSYSVEIAPVC 255
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A++LGN+ V+C+K++NSI DP +L+ L+A YWRSPF +L +
Sbjct: 256 RDDLVVLPKKMANSLGNISRLVLCSKISNSIQFFDPASLQSADLNAPVYWRSPFPSLLNA 315
Query: 234 RQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILGDYAIGY 274
+L+E+IVLDV+ ND R+HLG +L GD +GY
Sbjct: 316 TELIEFIVLDVEPTGDIRGKYVLADITVSRASDFGSNDNSFYIRSHLGAILHPGDSCLGY 375
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR-KHRKPNPPKLKPLEMEV----DG 329
L +N N + + PD I +KK Y K+++ K+RK ++ ++ D
Sbjct: 376 YLANSNLNSDLFDTLDTDNIPDVILVKKHYARKSRKSKNRKWKLKRMAKEHNDIVANDDS 435
Query: 330 SKCGADREKVNNEYEEFLRDL 350
+ ++E+ +YE FL+ L
Sbjct: 436 RQAKQEQERAERDYELFLQQL 456
>gi|341886241|gb|EGT42176.1| hypothetical protein CAEBREN_15656 [Caenorhabditis brenneri]
Length = 511
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 126/455 (27%), Positives = 195/455 (42%), Gaps = 112/455 (24%)
Query: 2 VQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
+Q+ I ++CC+CG+ + N +NMC CL+S VDITE +Q+ I C
Sbjct: 1 MQSLNITPTVGLIACCECGVAIEPNPANMCSGCLRSRVDITEGIQRSCTIYMCKFCDRYF 60
Query: 56 ----------------------------------------------KIKLKLTVQKEVLE 69
+IK+K+T+QKEV
Sbjct: 61 VPPSAWMRAELESKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFT 120
Query: 70 GVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDA 115
I++Q+ VV+ + D W A VQ+ +L+ KH A
Sbjct: 121 NTILQQA-VVVEFTVHSQLCDDCRRAEAKDFWRACVQVRQRAEFKKTLFYLEQLLLKHSA 179
Query: 116 PARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT 175
T +K + GI+FFF+ + A KFV+F+ V+P + + ++LVS TK+ K+T
Sbjct: 180 HKDCTGVKPVPTGIDFFFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHT 239
Query: 176 CSVEISAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR 224
VEI I N+ GN+ V+C +V+N I L+DP L+ + A +WR
Sbjct: 240 FCVEIVPICRDNIVCLPKKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWR 299
Query: 225 SPFKALHTSRQLVEYIVLDVK----------------------VASTENDTI-------L 255
PF +L +QL E+ VLDV+ V +D + L
Sbjct: 300 EPFDSLCGPKQLTEFYVLDVEPVENLQRSAGHGYVSKKHELADVWLVRSDQVGMSDAQSL 359
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
S RTHLGHLL GD + +D+ N N+ + PD I ++K + + R+
Sbjct: 360 SARTHLGHLLSPGDLVMAFDMKNCNVNNATFDAMNIDNVPDAIIVRKVFDRSRRTAKRQ- 418
Query: 316 NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
KLK L VDG+ G + V +E++ F+ D+
Sbjct: 419 --WKLKRL--VVDGNIVGNETASVADEFQGFMEDI 449
>gi|431915174|gb|ELK15861.1| 60S ribosomal export protein NMD3 [Pteropus alecto]
Length = 542
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 135/500 (27%), Positives = 213/500 (42%), Gaps = 139/500 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 53 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGMWIQCALE 112
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 113 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 172
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ +LI K+ +IK++
Sbjct: 173 VVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 229
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ +S K T S+EI I
Sbjct: 230 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIRSNTYNYKSTFSLEIVPICK 289
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP T++ +D + +W PF +L +
Sbjct: 290 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTVQVADIDGNTFWSHPFNSLCHPK 349
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 350 QLEEFIVMECSIVRDLKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 409
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + PD + IKKSY +++ R KLK E+
Sbjct: 410 GDLVLGFDLANCNLNDEHVNKMNPDRVPDVVLIKKSYDRTKRQRRRN---WKLK--ELAR 464
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 465 DRENMDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 521
Query: 369 LADLDSSDK---EEGDDSMI 385
L DL S EEG+ M+
Sbjct: 522 LEDLHISQDATGEEGESMMM 541
>gi|440639899|gb|ELR09818.1| nonsense-mediated mRNA decay protein 3 [Geomyces destructans
20631-21]
Length = 521
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 201/442 (45%), Gaps = 109/442 (24%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I ++A+ +C C+K +D++ +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGAASANALCYDCVKLTMDVSGGIQREATLHFCRDCERWLLPPTSYIVA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+KLT+Q V EGV+++QS +
Sbjct: 84 APESRELLALCLKKLRGLHKVRIIDASFIWTEPHSRRIKIKLTIQDSVSEGVVLQQSFEI 143
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ P ++ + W A VQ+ +LI KH A + IK+
Sbjct: 144 --EYVVAYQQCPDCAKSYTANTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDSINIKE 201
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+ G++F+F+ R+ A FV+F+ V P +S+ ++L+S + K++ S+E+ I
Sbjct: 202 VKDGLDFYFAARNQATAFVDFLTSVAPVKSKKSQELISMDIHTSTKSYKFSYSIELVPIC 261
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
AH +GN+ P +C +V +I LLDP TL+ + YWR+PF L
Sbjct: 262 KDDLVALPIKLAHQIGNMNPIALCYRVGTAINLLDPSTLQTHDVSTPIYWRAPFSCLADV 321
Query: 234 RQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGY 274
++LVE++VLD+ + E ND RTHLG++L GD +GY
Sbjct: 322 KELVEFVVLDIDLVGVEKGRWALAEATIARASDLGHNDKTFFARTHLGNVLHPGDSVMGY 381
Query: 275 DLHEANQNDIE---LEN---YKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
L E+N N+ + LEN Y S + PD + +KK Y K + K+R ++ E ++
Sbjct: 382 VLSESNFNNPQYDALENSSTYSSYI-PDVMLVKKFYARKKKPKNRNWRLKRMNKEEGDLL 440
Query: 329 GSKCGADREKVNNEYEEFLRDL 350
K D+EK++ +YE FLRD+
Sbjct: 441 PKK--GDQEKMDKDYEMFLRDV 460
>gi|342879412|gb|EGU80660.1| hypothetical protein FOXB_08801 [Fusarium oxysporum Fo5176]
Length = 517
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/442 (27%), Positives = 203/442 (45%), Gaps = 109/442 (24%)
Query: 13 TVSCCKCGITMVSNASN--MCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG + AS+ +C C+K VDI++ +Q+ A + C
Sbjct: 23 TILCCNCGAPIDGTASSGALCYDCIKLTVDISQGVQREATLNFCRDCDRWLMPPNSWIVA 82
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
++K+K+T+Q V +G++++QS V
Sbjct: 83 APESRELLAMCLKKLRGLNKVRIVDASFIWTEPHSRRVKVKITIQDSVQDGMLLQQSFEV 142
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + P ++ + W AAVQ+ +LI KH A I++
Sbjct: 143 VY--VVAYQQCPECAKSYTANVWRAAVQVRQKVLHKRTFLFLEQLIMKHGAHKDTLNIRE 200
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
GI+FFF+ ++ A KF++F+ VVP + + ++L+S T + K+T S E+ I
Sbjct: 201 AKDGIDFFFAQKNQAEKFIDFLNSVVPVKVKASQELISHDTHTSKSSYKFTYSAELVPIC 260
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+L GN+ P ++C K+ S+ LLDP TL+ C + + YWR+PF +L +
Sbjct: 261 KDDLVALPIKMAKQNGNISPLLLCHKIGTSVYLLDPQTLQTCDISSPIYWRAPFLSLTDT 320
Query: 234 RQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGY 274
+LVE+IV+D+ +T+ ND TRTHLG LL GD A+GY
Sbjct: 321 HELVEFIVMDIDRTATQKGKWTLAEATVARASDLGSNDRTYFTRTHLGRLLQPGDSAMGY 380
Query: 275 DLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
+ N+ E E Y S + PD + +KK Y + + + R ++ E E+
Sbjct: 381 LMAGTVFNNTEYEKIESSNTYSSRI-PDVVLVKKHYPRRRKNRKRNWQLKRMDKDEGELL 439
Query: 329 GSKCGADREKVNNEYEEFLRDL 350
K AD+E+++ EYE+FLRD+
Sbjct: 440 PKK--ADQERLDQEYEQFLRDV 459
>gi|384497741|gb|EIE88232.1| hypothetical protein RO3G_12943 [Rhizopus delemar RA 99-880]
Length = 481
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 188/422 (44%), Gaps = 110/422 (26%)
Query: 30 MCVTCLKSEVDITESLQKHANITPC----------------------------------- 54
MCV C+++EVDITE + KHA + C
Sbjct: 1 MCVNCIRNEVDITEGIPKHATLHFCRNCERYLQPPGIWVAAQLESRELLTLCLKKLKGLN 60
Query: 55 ----------------PKIKLKLTVQKEVLEGVIVEQ----SDVVMSRNIT-CVNLVPGF 93
++K+KLT+QKEV I++Q VV S+ C L
Sbjct: 61 KVRLVDAGFIWTEPHSKRVKVKLTIQKEVFANTILQQIFEVEYVVSSQQCEECTRL---- 116
Query: 94 MQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHA 139
+ W A VQ+ +LI KH+A T IK+ GI+F++ R+ A
Sbjct: 117 --AAQNTWKAVVQVRQKVEHKRTFLFLEQLILKHNAHKDTTNIKEAKDGIDFYYGSRNQA 174
Query: 140 VKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNL 188
+K VEF+ VVP + + +QL+S+ + K+T S EI I A+N
Sbjct: 175 IKMVEFLNAVVPMRYKTSEQLISKDIHTSVSNYKFTYSAEIVPICRDDLVCIPKKLANNF 234
Query: 189 GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK--- 245
GN+ +ICT+++NSI L+D TL + QY+R PF +L +++ ++E+ VLDV+
Sbjct: 235 GNISRLLICTRISNSIHLMDVNTLATADVSTTQYYRQPFLSLGSAKSMIEFYVLDVEPLG 294
Query: 246 ------------VAST----ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENY 289
VA ND R+HLG L GD +GYDL AN N+ E +
Sbjct: 295 PVDGKKVLCDVHVARMSDFGRNDEQFIARSHLGAFLNPGDTVMGYDLTRANFNNGEFDQL 354
Query: 290 KSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGS-KCGADREKVNNEYEEFLR 348
PD + ++KSY + + K R KL+ L EVD D+ ++ N+ E F+R
Sbjct: 355 NQSELPDVVLVRKSYPARKKSKQRN---WKLQQLSKEVDEMLPRKQDQARIENDMELFMR 411
Query: 349 DL 350
D+
Sbjct: 412 DI 413
>gi|61806709|ref|NP_001013587.1| 60S ribosomal export protein NMD3 [Danio rerio]
gi|82178735|sp|Q5BLF0.1|NMD3_DANRE RecName: Full=60S ribosomal export protein NMD3
gi|60649637|gb|AAH90467.1| NMD3 homolog (S. cerevisiae) [Danio rerio]
Length = 505
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 138/501 (27%), Positives = 207/501 (41%), Gaps = 138/501 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC CG+ + N +NMCV+CL+++VDI+E + K I C
Sbjct: 15 ILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCALE 74
Query: 55 ---------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMS 81
+IK+KLT+QKEV+ G I++Q
Sbjct: 75 SRELLALCLKKLKASMSKVRLIDAGFLWTEPHSKRIKIKLTIQKEVMNGAILQQV----- 129
Query: 82 RNITCVNLVPGFM------QTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
T +V G M D W A VQ+ +LI KH +
Sbjct: 130 --FTVEFVVQGQMCEDCHRVEAKDFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVR 187
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ GI+F+++ + HA K V+F+ VP +S+ ++L+S S K T SVEI
Sbjct: 188 IKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHSNTYNYKSTFSVEIV 247
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+ A +LGN+G +C +VT+SI L+DP TL+ +D +WR PF +L
Sbjct: 248 PVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAEVDGSTFWRHPFNSL 307
Query: 231 HTSRQLVEYI---------------------------VLDVKVASTENDTILSTRTHLGH 263
+ RQL E+I V K + ++ RT +GH
Sbjct: 308 CSPRQLEEFIIMDIDIIRDQRLGAGAGLKSNKHTLAEVWVQKTSEMDSSHQYHCRTFMGH 367
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
LL +GD +G+D AN ND L PD + IKKSY ++ K + KLK +
Sbjct: 368 LLNIGDLVLGFDFANANINDEFLNKMNPQHVPDVVLIKKSY---DRMKRARKRVWKLKEM 424
Query: 324 EMEVDGSKCGADREKVNNEYE-----------EFLRD-----LMASVTDKEDVPSVPLDY 367
+ E D + +R+ + RD + S TD + P + L
Sbjct: 425 DREKDAADTDDERQYTEFLEDLEEDEMLRKNINIFRDASKIPVEESDTDDDGAPRISLAE 484
Query: 368 LLADLDSSDKE--EGDDSMIE 386
+L DL SD EG D M +
Sbjct: 485 MLEDLSLSDATGGEGADMMTD 505
>gi|119175083|ref|XP_001239829.1| 60S ribosomal export protein NMD3 [Coccidioides immitis RS]
gi|392870023|gb|EAS28571.2| nonsense-mediated mRNA decay protein 3 [Coccidioides immitis RS]
Length = 526
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 199/449 (44%), Gaps = 120/449 (26%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K +DI+E +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTAAGALCEDCIKLTIDISEGIQREATLHMCKDCERWLQPPSQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+T+Q+EV +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLSKVRIIDASFLWTEPHSKRIKVKITIQQEVFQGTILQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A+VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CPECAKSYT---ANTWRASVQVRQKVPHKRTFLHLEQLILKHGAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ G++FFFS R+HA + V+F+ V P + + +QL+S + K + SVE+
Sbjct: 199 IKEVKDGLDFFFSQRNHAERLVDFLSSVAPVRVKKSQQLISMDVHTSTKSYKISFSVELI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V S+ LLDP TL+ + + YWRSPFK L
Sbjct: 259 PICKDDLVALPIKLARSLGNISPLTLCYRVGTSVNLLDPNTLQIADIPSPIYWRSPFKNL 318
Query: 231 HTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYA 271
++LVE+IV+D++ VA NDT TRTHLG +L GD
Sbjct: 319 ADVQELVEFIVMDIEPIGHSSGRFYLAEATVARASDLGVNDTTYFTRTHLGGVLHPGDSV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N ND E Y S + PD + +KK Y K + K R +LK L+
Sbjct: 379 MGYHLTGTNFNDENFEALEQSGTYSSTI-PDVVLVKKYYARKKKHKSRN---WRLKRLDR 434
Query: 326 EVDGSKCGADRE----KVNNEYEEFLRDL 350
E + + R+ ++ ++E FLRD+
Sbjct: 435 EEEDHPSASSRQQGKDRLEEDFEMFLRDI 463
>gi|407917478|gb|EKG10785.1| NMD3 domain-containing protein [Macrophomina phaseolina MS6]
Length = 516
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 140/502 (27%), Positives = 218/502 (43%), Gaps = 139/502 (27%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I S+A +C C+K VDI+E +Q+ A + C
Sbjct: 21 TILCCNCGAPIDGTSSAGALCYDCIKLTVDISEGVQREAVLHSCRDCDRWMSPPNQWLVA 80
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+T+Q+E + I++QS
Sbjct: 81 QPESRELLALCLRKLRGLNKVRIIDASFIWTEPHSRRIKVKITIQQEAFQNTILQQSFEV 140
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
+ V++ N C + + + W A+VQ+ +LI KH A I
Sbjct: 141 EYVLA-NQQCPDCAKSYTH---NTWRASVQVRQKVTHKRTFLYLEQLILKHSAHKDTINI 196
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
K+ GI+FFF+ R+ A KFV+F+ VVP + ++L+S + K+T S+EI
Sbjct: 197 KETHEGIDFFFAARNQAEKFVDFLKSVVPVFVKKSQELISMDVHTSVKSYKFTYSIEIVP 256
Query: 183 I-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I A LGN+ P IC ++ ++ +LDP TL+ + + YWRSPF L
Sbjct: 257 ICKDDLVVLPIKMAKQLGNIPPMTICNRIGTAVQVLDPQTLQTADISPEVYWRSPFTPLA 316
Query: 232 TSRQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHLLILGDYAI 272
+LVE+IVLD++ VA ND TRTH+G LL +GD +
Sbjct: 317 DVTELVEFIVLDIEPLGPTKGRYVLAEATVARASDMGSNDQTFYTRTHMGALLNVGDSVM 376
Query: 273 GYDLHEAN-QNDI--ELENYK--SLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GY L N ND+ ELEN K S PD + +KK Y K +R R ++ E E+
Sbjct: 377 GYHLLGTNFNNDLFDELENSKQYSSTIPDVLLVKKHYARK-KRNKRNWKVKRMAKEESEM 435
Query: 328 DGSKCGADREKVNNEYEEFLRDLMA--------SVTDKEDVP------------------ 361
K D+E++ ++E FLRD+ ++ + P
Sbjct: 436 LPRK--QDQERLERDFEMFLRDVEEDEDYRAGIALYKSQHAPKPTDAEEMEEDDDEEDEG 493
Query: 362 -SVPLDYLLADLDSSDKEEGDD 382
+P+D LL +++ + E+GD+
Sbjct: 494 LQIPMDQLLEEMEDLNMEDGDE 515
>gi|342319881|gb|EGU11826.1| RNA binding protein [Rhodotorula glutinis ATCC 204091]
Length = 535
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 124/463 (26%), Positives = 192/463 (41%), Gaps = 134/463 (28%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V C CG + N +N+CV CL++ VDITE + K ++ C
Sbjct: 17 VLCADCGTPIQPNGANLCVNCLRNSVDITEGIPKQTTLSFCRGCDRYLSPPNQWTRCDLE 76
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQ----SDV 78
++K+KLT+QKEV I++Q V
Sbjct: 77 SRELLAICLRKLKGLSKVRLIDAGFIWTEPHSRRVKVKLTIQKEVFSSTILQQIFEVEYV 136
Query: 79 VMSRNIT-CVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
V C L + W A VQ+ +LI +H+A ++
Sbjct: 137 VQGAQCQDCTRLA------AKNTWRAMVQVRQKVDHKRTFLYLEQLILRHNADRDTLQVA 190
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G+ FF++ + HA+K V+F+ V P +++ +QL+S T++ K T SVEI I
Sbjct: 191 EVKDGLNFFYASKQHALKMVDFLNGVAPVRTKTSEQLISLDTQNATTNKKETYSVEIVPI 250
Query: 184 -----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
+A +L N+G +C +V N + L+DP TL + QYWR+PF L
Sbjct: 251 CKDDLVCMPAKTARSLSNIGQLAVCHRVGNQVYLIDPLTLHLADISGGQYWRAPFPPLVD 310
Query: 233 SRQLVEYIVLDVKVAS------------------------TENDTILSTRTHLGHLLILG 268
Q VE+IVLD++ S +DTI TRTHLG +L G
Sbjct: 311 ITQAVEFIVLDIEPTSHPPKTAKGGRFLLADAQVSPMGGTMSSDTIFHTRTHLGSVLKPG 370
Query: 269 DYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
D +GY L +N N+ E P+ + I+K+Y + +K ++ KL+ + +V
Sbjct: 371 DTVLGYMLSNSNFNNDAWETMNQDRVPEVVLIRKTYPAR--KKAKRARNWKLRSMVKQVG 428
Query: 329 GSKCG---------------------ADREKVNNEYEEFLRDL 350
G G AD+ K +YE FL+DL
Sbjct: 429 GEDLGDAATIGFGRERAEPKSKRSAIADQAKAEQDYERFLQDL 471
>gi|402083202|gb|EJT78220.1| nonsense-mediated mRNA decay protein 3 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 525
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/450 (27%), Positives = 201/450 (44%), Gaps = 109/450 (24%)
Query: 5 AGIFAVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------- 55
G T+ CC CG I + A +C C+K+ VDI++ +Q+ A + C
Sbjct: 18 GGTAQTGATILCCNCGAPIDGTTAAGALCYDCIKTTVDISQGIQREAVLHFCRDCDRWLL 77
Query: 56 --------------------------------------------KIKLKLTVQKEVLEGV 71
++++KLT+Q V +GV
Sbjct: 78 PPASWVLAPPESRELLALCLKKLKGLHKVRIIDASFVWTEPHSRRVRVKLTIQDAVQDGV 137
Query: 72 IVEQSDVVMSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAP 116
+++QS V+ I P ++ + W A+VQ+ +LI KH A
Sbjct: 138 LLQQSFEVIY--IVSYQQCPDCAKSYTANVWRASVQVRQKVLHKRTFLFLEQLILKHGAH 195
Query: 117 ARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTC 176
IK++ GI+FFF+ R+ A KFV+F+ VP + + ++L+S+ + K+T
Sbjct: 196 RDTINIKEVKDGIDFFFAARNQAEKFVDFLSSSVPIRMKKSQELISQDVHTSTKSYKFTF 255
Query: 177 SVEISAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS 225
SVE+ I +L GN+ P V+C +V ++ +DP TL+ + A YWR
Sbjct: 256 SVELIPICKEDLVVLPIKLAKQVGNISPLVLCHRVGTAVNFMDPSTLQTAEVPASIYWRH 315
Query: 226 PFKALHTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLI 266
PF ++ S+ LVE+I++D++ T+ ND RTHL LL
Sbjct: 316 PFHSIAESKDLVEFIIMDIEPLGTQKGKWILGEATVARASDLGVNDKTYFARTHLSGLLQ 375
Query: 267 LGDYAIGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKL 320
GD +GY L N N+ E + Y S + PD + +KK ++ K + + R ++
Sbjct: 376 AGDSVLGYMLTGTNFNNEEFQALEDSHAYGSTI-PDVVLVKKHWQRKRRNRTRNWRLKRM 434
Query: 321 KPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
E E+ K AD+E+++ EYE+FLRD+
Sbjct: 435 AKDEGELLPKK--ADQERLDAEYEQFLRDV 462
>gi|336265764|ref|XP_003347652.1| 60S ribosomal export protein NMD3 [Sordaria macrospora k-hell]
gi|380091186|emb|CCC11043.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 519
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 201/445 (45%), Gaps = 115/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I S+A +C C+KS VDI++ +Q+ A + C
Sbjct: 21 TILCCNCGAPIDGTSSAGALCYDCIKSTVDISQGIQREATLHFCKDCDRWLLPPNSWVTA 80
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+++TVQ +V +GV+++QS
Sbjct: 81 SPESRELLSLCLKRLRNLGKVRITDARFIWTEPHSRRIKVQVTVQDQVADGVLMQQSFEV 140
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + + W AAVQ+ +LI KH A
Sbjct: 141 TYVVASQQ--CKDCAKSYT---ANVWRAAVQVRQKVTHKRTFLFLEQLILKHQAHRDTIN 195
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+ GI+F+F+ ++ A F+ F+ VVP ++ + L+S T + N KY SVEI
Sbjct: 196 IKEERDGIDFYFAQKNQAEGFISFLKSVVPVLTKESRHLISADTHTGNKSYKYNYSVEIV 255
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+ A ++GN+ P V+C ++ S+ LLDP TL+ + AD YWR+PF L
Sbjct: 256 PVCRDDLVALPLKLAKSIGNISPLVLCHRIGTSVNLLDPNTLQTAEVSADIYWRAPFHPL 315
Query: 231 HTSRQLVEYIVLD---------------VKVASTE----NDTILSTRTHLGHLLILGDYA 271
+ LVE+IV+D V+VA ND + TRTHLG LL GD
Sbjct: 316 AGTPDLVEFIVMDIEPTGVRKGKWLLSEVQVARASDLGVNDNVYFTRTHLGQLLRAGDSV 375
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N N +LE Y S++ PD I +KK + + + + R ++ E
Sbjct: 376 LGYMLEGTNFNSDDLEAIEASKAYGSMI-PDVILVKKHFPNRRRNRKRNWKLKRMTKDEG 434
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E+ D+ K++ EYE FLRD+
Sbjct: 435 ELLPKD--KDQAKMDAEYEMFLRDV 457
>gi|328773857|gb|EGF83894.1| hypothetical protein BATDEDRAFT_8015, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 480
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 196/435 (45%), Gaps = 106/435 (24%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC--------------------- 54
C CG +V NA+NMC+ C+++ VDIT+ + K A + C
Sbjct: 4 CASCGTLIVPNAANMCIECVRANVDITDGIPKQATVHFCRGCDRYLQPPNIWVACELESR 63
Query: 55 ------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--MSR 82
+IK+KLT+QKEV I++Q +V +
Sbjct: 64 ELLALCLRKLKGLSKVRLVDAGFTWTEPHSKRIKVKLTIQKEVFASTILQQVFIVEYIVA 123
Query: 83 NITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHG 128
C Q W A VQL + I KH+A + IK+ G
Sbjct: 124 GQYCEECTRVDAQLT---WKAVVQLRQKVAHKRTFLWLEQFILKHNAHKDTSNIKEFRDG 180
Query: 129 IEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS---- 184
++F+++ RSHA+K VEF+ VVP +S+ +QL+S T + K+T SVEI I
Sbjct: 181 LDFYYTQRSHAIKMVEFLSSVVPLKSKTSEQLISTDTHAGTSDYKFTYSVEIVPICKDDL 240
Query: 185 -------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLV 237
A L + P +CT+V+N + DP T + + A Q+W SPF L ++ L+
Sbjct: 241 VCLSHKMARTLSEISPLALCTRVSNVVTFTDPITGKSAEMRAPQFWDSPFPTLCETKDLI 300
Query: 238 EYIVLDVKV-------------ASTENDT--ILSTRTHLGHLLILGDYAIGYDLHEANQN 282
E+ V+DV++ S ND RTHLG +L GD+A GY + AN N
Sbjct: 301 EFYVIDVQLEGQFGRHQMATVEVSRSNDLSRTFIVRTHLGFILNAGDHAKGYIIANANFN 360
Query: 283 D-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG--SKCGAD 335
+ + N + LV PD + ++KSY N R+ R+ KLK L E DG ++ D
Sbjct: 361 NDNFDHLMTSNRRGLV-PDVVLVRKSY--PNARRKRRRRNWKLKGLVKEEDGEVNRTKLD 417
Query: 336 REKVNNEYEEFLRDL 350
+ K +YE FLRD+
Sbjct: 418 KSKTEADYEVFLRDV 432
>gi|412985300|emb|CCO20325.1| predicted protein [Bathycoccus prasinos]
Length = 565
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 129/478 (26%), Positives = 199/478 (41%), Gaps = 142/478 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V CC C ++ N + MCV C+K+ VDITE +QK ++ C
Sbjct: 10 VLCCLCATSISPNPTGMCVECIKTRVDITEGIQKQCSVIHCNQCARYLQPPKHWIRADLE 69
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSR 82
++K KLTVQKEVL G I++QS VV
Sbjct: 70 SKELLTFCIKRVKGLNKVKLVDAGFVWTEPHSKRLKTKLTVQKEVLNGAILQQSFVVEYV 129
Query: 83 NITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHG 128
+ D W A VQ+ +LI KH A +K G
Sbjct: 130 VEWNMCDACARAAANADQWQACVQVRQKVEHKRTFLFLEQLILKHSMEVNAIGVKSQPDG 189
Query: 129 IEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI----- 183
++F++ RSH +K V+F+G V+P +SR++KQLVS ++T VEI +
Sbjct: 190 LDFYYGHRSHGLKMVDFIGSVLPIRSRNDKQLVSHDANDNTYNYRFTLMVEIVPMCREDL 249
Query: 184 ------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLV 237
++ + G +GP V+CT+V +S+ + TLR +L+++QYWR PF A+ S+QL
Sbjct: 250 VCLPPKTSKSFGGIGPVVLCTRVGSSMQFTETHTLRRVWLNSEQYWRYPFVAVANSKQLC 309
Query: 238 EYIVLDVKVASTE-------NDTILSTRTHL----------------------------- 261
EYIVLD+++ + +D + R+ L
Sbjct: 310 EYIVLDLEIVNGNEWEQNGGDDGLGENRSQLFNGSQFGGNASTIGGKQRRANRKNLLADV 369
Query: 262 ---------------------GHLLILGDYAIGYDLHEANQNDIELENYKSLVP----PD 296
G +L +GD A+GYDL +D ++Y V PD
Sbjct: 370 TVARSRDFGTNDITFFTRTHLGSVLKVGDTALGYDLTNVQISDESFDSYVEKVGESRIPD 429
Query: 297 TIKIKKSYKEKNQ----RKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ +KKSY EK + R +R+ K + E + +K D EK + E F+++L
Sbjct: 430 VVLVKKSYAEKRKKRRDRGYRRAWELKRMDINEEEETNK-KDDAEKRMQDEELFMQEL 486
>gi|367016341|ref|XP_003682669.1| 60S ribosomal export protein NMD3 [Torulaspora delbrueckii]
gi|359750332|emb|CCE93458.1| hypothetical protein TDEL_0G00910 [Torulaspora delbrueckii]
Length = 517
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 122/441 (27%), Positives = 194/441 (43%), Gaps = 106/441 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ + S MC C+K VDIT + + AN++ C
Sbjct: 20 TVLCCNCGVPIDGSGGLVMCYDCIKMTVDITAGIPREANVSFCRNCERFLQPPGQWVRAD 79
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVM 80
+I++KLTVQ E + I++Q+ V
Sbjct: 80 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRVKLTVQGEAIANTIIQQTFEV- 138
Query: 81 SRNITCVNLVPGFMQTGPDH-WDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ P ++ H W AAVQ+ +LI KH+A I +
Sbjct: 139 -EYVVIAMQCPDCAKSYTTHTWRAAVQIRQKVPHKRTFLYLEQLILKHNAHVDTISISEA 197
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++FF+ ++HAVK ++F+ VP + + ++L+S+ T + + K++ SVEI I
Sbjct: 198 KDGLDFFYGQKNHAVKMIDFLNAAVPIKYKKSEELISQDTHTGSSTYKFSYSVEIVPICR 257
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ PFV+C+KVTN++ LDP TL+ + A YWR+PF +L
Sbjct: 258 DDLVVLPGKLAKSLGNISPFVLCSKVTNAVQFLDPNTLQTADVPASVYWRAPFHSLADVS 317
Query: 235 QLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGYD 275
QL+E+IVLDV+ ND R+HLG + GD +GY
Sbjct: 318 QLIEFIVLDVEPTGVSRGKRVLADITVARAADLGVNDQEYYVRSHLGAICHAGDSVMGYY 377
Query: 276 LHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGAD 335
+ +N N + PD + +KK Y+ K +K+R ++ E+D S+ +
Sbjct: 378 VANSNYNSDLFDGLNIDHVPDVVLVKKLYRRKT-KKNRNWKLKRMAKEHKEIDASQDYSS 436
Query: 336 R------EKVNNEYEEFLRDL 350
R E+ +YE FL++L
Sbjct: 437 RAQRQEMERAERDYEVFLQEL 457
>gi|242015181|ref|XP_002428252.1| Nonsense-mediated mRNA decay protein, putative [Pediculus humanus
corporis]
gi|212512813|gb|EEB15514.1| Nonsense-mediated mRNA decay protein, putative [Pediculus humanus
corporis]
Length = 506
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/405 (28%), Positives = 174/405 (42%), Gaps = 109/405 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG + N SNMCV CL++ VDITE + K I C
Sbjct: 15 ILCCQCGTLITPNPSNMCVGCLRTRVDITEGIPKQVTIYFCKGCERYLQPPSEWIYCALE 74
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMSR 82
+IK+KLTV EVL G I++Q VV
Sbjct: 75 SRELLAFCLKKLKGLNRLKLIDAGFVWTEPHSKRIKVKLTVHGEVLGGAILQQVFVV--E 132
Query: 83 NITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
I + +T D+W VQ+ +LI KH A IK +
Sbjct: 133 YIVGHQMCSDCHKTEAKDYWRCLVQVRQRCENKKTFFYLEQLILKHKAHENTLGIKPVHE 192
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++FF+S +HA K V+F+ V+P +S+H K+L+S S KYT SVEI +S
Sbjct: 193 GLDFFYSTEAHARKMVDFITNVLPCRSQHSKKLISHDIHSNTYNYKYTWSVEIVPLSKDG 252
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
LG + P I ++TNS+ L+ P + + + A +WR+PF + + Q+
Sbjct: 253 VVCLSKKLTQQLGGINPLCIVARITNSVHLIHPASSQIAEVSASVFWRTPFSIICSPPQM 312
Query: 237 VEYIVLDVKVASTE------------------------------NDTILSTRTHLGHLLI 266
+E++V+++ V + N+ + TRTHLG +L
Sbjct: 313 IEFVVIEIDVINANEKQRFKGQGAISHKHLLADVWVVKASELGINENTIHTRTHLGAILK 372
Query: 267 LGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRK 311
GD +GY+L + N ND + K PD I IKK Y E++ RK
Sbjct: 373 PGDSVLGYNLADFNVNDDNFDKLKENDLPDVILIKKYYGERSARK 417
>gi|325181410|emb|CCA15826.1| 60S ribosomal export protein NMD3 putative [Albugo laibachii Nc14]
Length = 526
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/446 (27%), Positives = 202/446 (45%), Gaps = 116/446 (26%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------ 54
T+ CC C + +N +N+C TCLK+E DI+E + K I C
Sbjct: 15 TILCCICSTAIQANTANICSTCLKNETDISEKIPKEYIIQQCRGCLKWQRPPWIAADLES 74
Query: 55 -------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--MS 81
+++LK+T+QKEVL V+++Q+ ++ +
Sbjct: 75 KELLALCLKKISGLQHIKLVDAVWIWTEPHSKRLQLKITIQKEVLSKVVIQQALLITFIV 134
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
RN+ C F W A VQ+ +LI K+ A A+A+ I+ +
Sbjct: 135 RNLQCDECQSIFTNQS---WKAVVQVRQKVDHKRTFYFLEQLILKYQAHAKASNIETQPN 191
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++FFF R+HA +FV+F+ E VP + + K+L+S S K+T SVEI+ +
Sbjct: 192 GVDFFFLERNHAQRFVDFLEECVPLKLKSAKKLISSDNHSNTHNYKFTYSVEIAPVCKDD 251
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A +LGN+ + T V++SI ++DPFTL+ +D +YWR PF+ + + + L
Sbjct: 252 LVVLPTKLARSLGNIHNLCLVTSVSSSIHVVDPFTLQTAEIDCAKYWRHPFQGVRSVKAL 311
Query: 237 VEYIVLDV-------------------KVASTE---------NDTILSTRTHLGHLLILG 268
+Y VLD+ ++ E NDT THLG++L +G
Sbjct: 312 KKYTVLDINPCIRSQGDGKAYHVNKKTRLVEVEVVRECDFGVNDTRFFAVTHLGNVLHVG 371
Query: 269 DYAIGYDLHEA--NQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME 326
D + YDL + N NDI+ + PD + ++K + + ++++ KLK LE
Sbjct: 372 DTVLCYDLTSSVFNDNDIKPLEEVGITLPDVVLVRKKFSRRTKKRNW-----KLKQLEEI 426
Query: 327 VDGSKCGADREKVNN--EYEEFLRDL 350
G + ++ EYE FL +L
Sbjct: 427 HSGLPAQKNNRAADDSMEYESFLDEL 452
>gi|344230456|gb|EGV62341.1| hypothetical protein CANTEDRAFT_126135 [Candida tenuis ATCC 10573]
Length = 516
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 124/441 (28%), Positives = 200/441 (45%), Gaps = 106/441 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S MC C+K VDITE + + ANI+ C
Sbjct: 16 TVLCCNCGVPMDGSTGMVMCYDCIKLTVDITEGIPREANISFCRNCERFLQPPGQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSD--V 78
+I++K+TVQ E + IV+QS V
Sbjct: 76 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRIKITVQGEAMNNTIVQQSFEVV 135
Query: 79 VMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + P+ W A VQ+ +LI +H+A I++
Sbjct: 136 YVVVAMQCADCAKTYT---PNTWRATVQIRQKVPHKRTFLYLEQLILRHNAHQDTVSIQE 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF+S ++HAVK ++F+ VVP + + ++LVS+ +S + K+ SVEI I
Sbjct: 193 SSDGLDFFYSQKNHAVKMLDFLTAVVPLKYKKSEELVSQDIQSGSSTYKFAYSVEIVPIC 252
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
AH+ GN+ V+C+K++N I LDPFTL+ L YWR+PF +L +
Sbjct: 253 RDDLVVLPKKLAHHSGNISRVVLCSKISNMIQFLDPFTLQMTDLQPSIYWRNPFSSLISV 312
Query: 234 RQLVEYIVLDVK--------------VASTE-----NDTILSTRTHLGHLLILGDYAIGY 274
+VE+IVLDV+ S E ND R+HLG +L GD +GY
Sbjct: 313 TNMVEFIVLDVEPTGETRGKHVLADITVSRESDLGVNDQSYYIRSHLGAILHPGDSCLGY 372
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR-KHRKPNPPKLKPLEMEVDGS--- 330
L +N N ++ P+ + +KK Y K+++ K+R ++ ++ G+
Sbjct: 373 FLTNSNFNSDLWDSLDESNTPEVVLVKKFYPRKSKKSKNRNWKLKRMAREHQDIGGAEDS 432
Query: 331 -KCGADREKVNNEYEEFLRDL 350
+ ++E+ +YE FL++L
Sbjct: 433 RQAKQEQERAERDYELFLQEL 453
>gi|226289241|gb|EEH44753.1| nonsense-mediated mRNA decay protein [Paracoccidioides brasiliensis
Pb18]
Length = 526
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 195/448 (43%), Gaps = 120/448 (26%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG + + A +C C+K VDI++ +Q+ A + C
Sbjct: 24 TILCCNCGAPVDGTNAAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQPPNQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+TVQ+E +G I++Q+
Sbjct: 84 AIESRELLALCLRKLRGLGKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTIMQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + P+ W A VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CSECAKSYT---PNTWRALVQVRQKVPHKRTFLYLEQLILKHSAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+ G++FFFS R+HA K V+F+ V P + + ++L+S + K T SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKLVDFLSSVAPVRVKKSQELISVDVHTSTKSYKITFSVYLI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +L N+ P +C +V SI LLDP TLR + + YWR+PFK L
Sbjct: 259 PICKDDLVALPLSLAKSLSNIHPLTLCYRVGTSIGLLDPATLRTADIPSPVYWRTPFKNL 318
Query: 231 HTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILGDYA 271
R+LVE+IV+D++ A NDT TRTHLG +L +GD
Sbjct: 319 ADVRELVEFIVMDIEPAGKSVGHFHLAEATVARASDLGSNDTTYFTRTHLGGVLRVGDSV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L +N ND E Y S + PD + +KK Y K + K +LK L
Sbjct: 379 MGYLLTGSNFNDSNFEALERSGTYSSTI-PDVVLVKKHYPRKKKAKRNW----RLKRLNR 433
Query: 326 EVDGSKCGADREK---VNNEYEEFLRDL 350
E + + A +++ + ++E FLRD+
Sbjct: 434 EEEAATASARKQEKDLLEEDFEMFLRDV 461
>gi|308459422|ref|XP_003092031.1| hypothetical protein CRE_23156 [Caenorhabditis remanei]
gi|308254449|gb|EFO98401.1| hypothetical protein CRE_23156 [Caenorhabditis remanei]
Length = 516
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/443 (27%), Positives = 191/443 (43%), Gaps = 112/443 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
++CC+CG+ + N +NMC CL+S VDITE +Q+ I C
Sbjct: 13 IACCECGVAIEPNPANMCSGCLRSRVDITEGIQRSCTIYMCKFCDRYFVPPSAWMRAELE 72
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
+IK+K+T+QKEV I++Q+ VV+
Sbjct: 73 SKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQA-VVVE 131
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
+ D W A VQ+ +L+ KH A T +K +
Sbjct: 132 FTVHSQLCDDCRRAEAKDFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECTGVKPVPT 191
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN 187
GI+F+F+ + A KFV+F+ V+P + + ++LVS TK+ K+T VEI I N
Sbjct: 192 GIDFYFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCVEIVPICRDN 251
Query: 188 L-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
+ GN+ V+C +V+N I L+DP L+ + A +WR PF +L +QL
Sbjct: 252 IVCLPKKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWREPFDSLCGPKQL 311
Query: 237 VEYIVLDVK----------------------VASTENDTI-------LSTRTHLGHLLIL 267
E+ VLDV+ V +D + LS RTHLGHLL
Sbjct: 312 TEFYVLDVESIDNFERKAGHGYISKKHELADVWLVRSDQVGMSDAQSLSARTHLGHLLSP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD + +D+ N N+ + PD I ++K + + R+ KLK L V
Sbjct: 372 GDLVMAFDMKNCNVNNATFDAMSVDNVPDAIIVRKVFDRSRRVAKRQ---WKLKRL--VV 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL 350
DG+ G + V +E++ F+ D+
Sbjct: 427 DGNIVGNETASVADEFQGFMEDI 449
>gi|407420941|gb|EKF38750.1| hypothetical protein MOQ_001039 [Trypanosoma cruzi marinkellei]
Length = 535
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 183/416 (43%), Gaps = 111/416 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC CG+ + SN SNMC +CL+S VDITESLQK I CP
Sbjct: 19 VLCCICGLLIDSNPSNMCPSCLRSHVDITESLQKEYIIVYCPECTRYLQPPQYWSHADLE 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
++K+KL +QKEVL ++++Q+ VV
Sbjct: 79 SRELLTICLKRIKGMSRNVFKLVDANFIWTEPHSKRLKVKLVLQKEVLNNIVIQQACVVE 138
Query: 80 ----MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
+ TC + TG WDA VQ+ +LI KH +
Sbjct: 139 YVVLWQQCPTCQKVA-----TGQPQWDACVQVRQKTTHKKTFMFLEQLILKHKLHESFIR 193
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
++ G++FFF+ +SHA+ F+EF+ P R QLVS +K+ +T SVEI+
Sbjct: 194 VESKPDGLDFFFAHKSHAMNFLEFLNRNSPITRRDAVQLVSHDSKNNTAVQHHTFSVEIA 253
Query: 182 AISAHNL------------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ +L G LGP VI KV +SI LLDP TLR YW+ PF +
Sbjct: 254 PLCREDLLLLPYQNYYLKLGGLGPLVIVHKVYSSIVLLDPKTLRAGEFTGQYYWKKPFPS 313
Query: 230 LHTSRQLVEYIVLDVKVASTEND--------TILSTR----------THLGHLLILGDYA 271
+SR+L E+ VL+ + N LS+ +HLG LL GD A
Sbjct: 314 FMSSRELTEFYVLECTLTGVTNGRYQLGMVTVCLSSEVGHGREWIVTSHLGGLLQPGDLA 373
Query: 272 IGYDLHEANQNDIELEN--YKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N N+ E ++ YK + ++K + + R+H++ KLK LE+
Sbjct: 374 MGYLLEGKNFNNEEWDSQRYKPEQLQEVFLVRKHFPSQRARRHKRMW--KLKHLEV 427
>gi|198435795|ref|XP_002120179.1| PREDICTED: similar to nmd3 homolog (s. cerevisiae) [Ciona
intestinalis]
Length = 498
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 130/482 (26%), Positives = 219/482 (45%), Gaps = 118/482 (24%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG + N SNMCV CL+ +VDIT+ + KH N+ C
Sbjct: 18 ILCCECGTEIEPNPSNMCVDCLRCKVDITDGIPKHGNLLQCKNCVRYLSPPVAWIPAQPE 77
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
++K+K+TVQKEV G +EQ+ VV
Sbjct: 78 SRELLAICLKRIKSALQRVRLVDASFIWTEPHSKRVKVKITVQKEVEGGTFLEQTFVV-- 135
Query: 82 RNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ ++ P + D+W+++VQ+ ++I KH TKI +
Sbjct: 136 EYVIHNHMCPDCHRVEAKDYWNSSVQVRQKAGHKKTFYYLEQVILKHKMHQNTTKISQKP 195
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
+G++F++S + A KF +F+ V+P + + ++LVS T S K + SVE+ +
Sbjct: 196 NGLDFYYSSKQDARKFTDFLMSVLPCKYQSSQKLVSHDTHSNTFNYKTSFSVELPPVCKD 255
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
+ LGNLG +IC +VTN I L+D +L+ + YWR PF+A+ T +
Sbjct: 256 DIVCLPKKLSQQLGNLGQLLICVRVTNCIHLIDFSSLQIAEVSGSLYWRHPFQAICTPKS 315
Query: 236 LVEYIVLDVKVA-------------------------STE---NDTILSTRTHLGHLLIL 267
L+E+ ++++++ S+E +D + RTHLGHLL
Sbjct: 316 LIEFTIMEIEIVKQRHFKSGQGLVSNKHVLADCWVIKSSELGMHDEYIHVRTHLGHLLKP 375
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKE-KNQRKHRKPNPPKLKPLEME 326
GD A+G DL +N N+ +L+ K + PD I ++K + + + +R+ R ++
Sbjct: 376 GDAALGLDLKNSNVNNDDLDKMKGM--PDVILVRKVFADRQRRRRRRNWKLQRIGERGSS 433
Query: 327 VDGSKCGADREKVNNEYEEFLRDL-------MASVTDKEDVPSVPLDYLLADLDSSDKEE 379
VDG + + + E +EF +++ + S D+ + PSV L +L DL D E
Sbjct: 434 VDGEEGYTEFLEDLEEDKEFRKNIDIYIDGDVPSSADETEFPSVSLQEMLQDLSIKDDVE 493
Query: 380 GD 381
D
Sbjct: 494 MD 495
>gi|225682064|gb|EEH20348.1| nonsense-mediated mRNA decay protein [Paracoccidioides brasiliensis
Pb03]
Length = 526
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 195/448 (43%), Gaps = 120/448 (26%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG + + A +C C+K VDI++ +Q+ A + C
Sbjct: 24 TILCCNCGAPVDGTNAAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQPPNQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+TVQ+E +G I++Q+
Sbjct: 84 AIESRELLALCLRKLRGLGKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTIMQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + P+ W A VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CSECAKSYT---PNTWRALVQVRQKVPHKRTFLYLEQLILKHSAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+ G++FFFS R+HA K V+F+ V P + + ++L+S + K T SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKLVDFLSSVAPVRVKKSQELISVDVHTSTKSYKITFSVYLI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +L N+ P +C +V SI LLDP TLR + + YWR+PFK L
Sbjct: 259 PICKDDLVALPLSLAKSLSNIHPLTLCYRVGTSIGLLDPATLRTADIPSPVYWRTPFKNL 318
Query: 231 HTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILGDYA 271
R+LVE+IV+D++ A NDT TRTHLG +L +GD
Sbjct: 319 ADVRELVEFIVMDIEPAGKSVGHFHLAEATVARASDLGSNDTTYFTRTHLGGVLRVGDSV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L +N ND E Y S + PD + +KK Y K + K +LK L
Sbjct: 379 MGYLLTGSNFNDSNFEALERSGTYSSTI-PDVVLVKKHYPRKKKAKRNW----RLKRLNR 433
Query: 326 EVDGSKCGADREK---VNNEYEEFLRDL 350
E + + A +++ + ++E FLRD+
Sbjct: 434 EEEAATASARKQEKDLLEEDFEMFLRDV 461
>gi|255719250|ref|XP_002555905.1| 60S ribosomal export protein NMD3 [Lachancea thermotolerans CBS
6340]
gi|238941871|emb|CAR30043.1| KLTH0H00594p [Lachancea thermotolerans CBS 6340]
Length = 512
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 137/498 (27%), Positives = 213/498 (42%), Gaps = 137/498 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG M S+ MC C+K VDITE + + +N++ C
Sbjct: 18 TVLCCNCGTPMDGSSGLVMCYDCIKLTVDITEGIPRESNVSFCRNCERFLQPPGQWVRAE 77
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 78 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIIQQTFEVE 137
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I++
Sbjct: 138 YVVVAMQCADCARSYT---TNTWRATVQIRQKVSHKRTFLYLEQLILKHNAHVDTINIQE 194
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP +S+ ++LVS+ T + K++ SVEI +
Sbjct: 195 AKDGLDFFYAQKNHAVKMLDFLNAVVPIKSKKSEELVSQDTHTGASTYKFSYSVEIVPLC 254
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +LGN+ FV+C+K++N+I LDP TL+ L YWRSPF +L
Sbjct: 255 RDDLVVLPKKLAKSLGNISQFVLCSKISNTIQFLDPMTLQTSDLSPSVYWRSPFDSLADV 314
Query: 234 RQLVEYIVLDV---------------KVAST----ENDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV VA ND + R+HLG + GD +GY
Sbjct: 315 SQLVEFIVLDVDPTGQTKGKWVLADITVARASDLGSNDQVYYVRSHLGAICHPGDSVMGY 374
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N + PD + +KK Y RK RK KLK + E ++ S+
Sbjct: 375 FIANSNYNSDLFDALNMEHVPDVVLVKKQYI----RKTRKNRSWKLKRMAREHKDIEASQ 430
Query: 332 CGADR------EKVNNEYEEFLRDLMASVTDKEDV-----------------------PS 362
+ R E+ +YE FL++L ++ V P
Sbjct: 431 DYSSRQQKQEMERAEKDYELFLQELEEDAEMRQAVNLYKSAQQAPQDGEMDEDEEEDAPQ 490
Query: 363 VPLDYLLADLDSSDKEEG 380
+ +D LL +LD +EG
Sbjct: 491 IDIDELLDELDEMTLDEG 508
>gi|315042299|ref|XP_003170526.1| 60S ribosomal export protein NMD3 [Arthroderma gypseum CBS 118893]
gi|311345560|gb|EFR04763.1| nonsense-mediated mRNA decay protein 3 [Arthroderma gypseum CBS
118893]
Length = 524
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/445 (28%), Positives = 196/445 (44%), Gaps = 113/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K VDI+E +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTAAGALCEDCIKLTVDISEGVQREATLHCCKDCERWLQPPTQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
++K+K+T+Q+E +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLSKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGTILQQAFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A+VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CAECAKSYT---VNTWRASVQVRQKVPHKRTFLYLEQLILKHGAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ G++F+FS R+HA K V+F+ V P + + +QL+S + + K T S E+
Sbjct: 199 IKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFSAELI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V SI +LDP TL+ + A YWRSPF L
Sbjct: 259 PICKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPAPIYWRSPFANL 318
Query: 231 HTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYA 271
++LVEY+V+D++ VA + NDT RTHLG +L GD
Sbjct: 319 ADVQELVEYVVMDIEAIGQSSGRYHLAEATVARSSDLGVNDTTYFARTHLGGILHPGDTV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N N+ E Y S + PD I +KK Y K + K R +L E
Sbjct: 379 MGYHLTGTNFNNTNFEEIEASHTYGSTI-PDVILVKKHYPRKRKNKKRNWRLKRLDREEE 437
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
+ SK ++ ++ +++E FLRD+
Sbjct: 438 DERPSKKQSNNNRLEDDFEMFLRDV 462
>gi|320586599|gb|EFW99269.1| nonsense-mediated mRNA decay protein 3 [Grosmannia clavigera
kw1407]
Length = 1008
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 200/445 (44%), Gaps = 113/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ C CG I +++ +C C+K VDI++++ + AN+ C
Sbjct: 483 TILCYNCGAPIDGTTSSGALCYDCIKMTVDISQNIPREANVQFCRDCDRWFLPPSQWVVA 542
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
++++KLTVQ+EV +GV++ QS V
Sbjct: 543 APESREMLAMCLKRLRGLNKVRVVDASFIWTEPNSRRVRVKLTVQEEVSDGVLLNQSFEV 602
Query: 80 MSRNIT--CVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
M T C + + W A VQ+ +LI KH A IK
Sbjct: 603 MYTVSTHQCPECAKSYTH---NVWRACVQVRQKVQHKRTFLFLEQLILKHGAHRDTLNIK 659
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++FFF+ R+ A KFV+F+ VVP ++ +LVS T + + K+ SVE+ I
Sbjct: 660 EAKEGLDFFFAQRNQATKFVDFLKSVVPVHVKNSPELVSEDTHTGSKSMKFAFSVELVPI 719
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS--PFKAL 230
A +GN+ P +C ++ +I LLDP TL+ + A YWR PF L
Sbjct: 720 CKDDLVALPLVLAKRIGNIAPVALCYRIGTAINLLDPATLQTAEVPASIYWREKVPFTPL 779
Query: 231 HTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYA 271
++QLVE++VLD++ ND TRTHLG LL GD A
Sbjct: 780 TDAQQLVEFVVLDIEPVGVRKGRWQLAEATVARASDLGSNDNTYFTRTHLGGLLHPGDSA 839
Query: 272 IGYDLHEANQNDIELEN------YKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L+ N+ +L+ Y SLV PD + +KK Y N+RK+++ N +
Sbjct: 840 MGYLLNGTVFNNQQLDEIEQSHAYSSLV-PDVVLVKKHY--PNRRKNKRRNWKLRRMARE 896
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E D AD+E+++ EYE FL+D+
Sbjct: 897 EGDLLPKKADQERLDAEYEMFLQDV 921
>gi|312371222|gb|EFR19462.1| hypothetical protein AND_22389 [Anopheles darlingi]
Length = 502
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 143/505 (28%), Positives = 221/505 (43%), Gaps = 146/505 (28%)
Query: 5 AGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------- 54
AG V K + CC+CG+ + NA+NMCV CL+S VDITE++ K A I C
Sbjct: 15 AGSGTVNK-ILCCECGVPIEPNATNMCVPCLRSHVDITENIPKQAVIFFCRNCERYLNPP 73
Query: 55 -----------------------------------------PKIKLKLTVQKEVLEGVIV 73
+IK+KLTV EV+ V++
Sbjct: 74 NEWVQCGLESKELLSLCLKRLSGLKQVKLVDAGFVWTEPHSKRIKVKLTVHGEVMNDVVL 133
Query: 74 EQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPA 117
+Q VV N C + D W VQ+ ++I KH A
Sbjct: 134 QQVFVVEFTVNNQMCDDC---HRTEAKDFWRCMVQVRQKAVNRKTLFYLEQMILKHRAHE 190
Query: 118 RATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCS 177
IK G++FF++ +H+ K V+F+ V + K+L+S S + KY+ +
Sbjct: 191 NTLGIKPTAGGLDFFYATDAHSRKMVDFLQAVT-----NSKKLISHDIHSNSYNYKYSYA 245
Query: 178 VEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSP 226
V+I +S A +G++ P + TKV NSI L+DP T + + +W++P
Sbjct: 246 VDIVPVSKGSLVCLSKRLAQQMGHIAPVCLVTKVANSIHLIDPQTAQLAEVQNMAFWKNP 305
Query: 227 FKALHTSRQLVEYIVLDVK------------------------VASTE---NDTILSTRT 259
F+A+ +Q++E+IV+DV+ V ++E +D+ + R+
Sbjct: 306 FEAICNPKQMIEFIVMDVEFRDQKAFPGQGPVSMRHTLADVWVVKASELGLDDSTVHVRS 365
Query: 260 HLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
HLG+LL GD +GYDL +AN N+ + E + P+ + +KKSY + ++++R K
Sbjct: 366 HLGNLLKPGDTVLGYDLRDANVNNGDFEKLSADTIPNVLLVKKSYDKTVRKQNRN---WK 422
Query: 320 LKPLEMEVDGSKCGADREKVNNEYEEFLRDL--------------------MASVTDKED 359
LK L +V A + N+Y EFL DL M T+ D
Sbjct: 423 LKHLAEDV------ALDTDIENDYNEFLEDLEEDPELRQNVNIFKDSKRQQMPVDTNDMD 476
Query: 360 VPSVP---LDYLLADLDSSDKEEGD 381
PSVP L+ +L DL D E GD
Sbjct: 477 DPSVPRITLEEMLDDLVLDDAEMGD 501
>gi|170584344|ref|XP_001896961.1| NMD3 family protein [Brugia malayi]
gi|158595650|gb|EDP34189.1| NMD3 family protein [Brugia malayi]
Length = 501
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 199/444 (44%), Gaps = 116/444 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG ++ NA NMC+ C++S +DITE + K C
Sbjct: 14 ILCCQCGASIEPNAMNMCIACVRSRIDITEGIPKQYRAFMCKFCNRWLIPPNGWLHAERE 73
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++KLKLT+QKEVL G +++Q +V
Sbjct: 74 SKELLSILLKKLKPTMTKVRLTDASFLWTEPHSKRVKLKLTIQKEVLTGAVLQQVFIVEF 133
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ N C + D W A VQ+ +L+ KH A T IK +
Sbjct: 134 IVMNQMCDDCRRA---EAKDFWRACVQVRQKCEFKKTLFYLEQLVLKHSAHLNTTTIKPV 190
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI-- 183
G++FF++ A KF++F+ +P + + ++LV+ KS K+T VE+ I
Sbjct: 191 PTGVDFFYAKLQDARKFIDFITSHLPCRYSYAQELVTHDAKSNIYDYKHTFCVEVVPICR 250
Query: 184 ---------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
+A LGN+ V+C +V I ++DP TL+ ++A QYWR PF+ L S+
Sbjct: 251 GDLVCLPKKTAQALGNMNQLVVCLRVNTVITVIDPSTLQMADINATQYWRDPFQTLCQSK 310
Query: 235 QLVEYIVLDVK----VASTENDTILS------------------------TRTHLGHLLI 266
+L ++ V+DV+ + T + LS TR+HLGHLL
Sbjct: 311 RLNQFYVVDVEDIDFIQLTAGCSHLSTKHRLADIWVVPSNQIGQENQEVCTRSHLGHLLK 370
Query: 267 LGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME 326
GD +GYDL +N N L++ ++ D I ++K Y +++ R+ R+ KLK L ++
Sbjct: 371 PGDLVLGYDLRSSNVNSALLDDMRTDRIADIILVRKVY-DRSIRQERR--NWKLKRL-IQ 426
Query: 327 VDGSKCGADREKVNNEYEEFLRDL 350
DG D + NE+E FL DL
Sbjct: 427 NDGDV--YDSSSMENEFENFLEDL 448
>gi|393909661|gb|EFO25985.2| NMD3 family protein [Loa loa]
Length = 500
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 125/443 (28%), Positives = 201/443 (45%), Gaps = 115/443 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG ++ NA NMCV C++S +DITE + K + C
Sbjct: 14 ILCCQCGTSIEPNAMNMCVACVRSRIDITEGIPKQSRAFMCKFCSRWLIPPNGWVNAERE 73
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++KLKLT+Q EVL G +++Q +V
Sbjct: 74 SKEMLAILLKKLKPTMTRVRLIDASFVWTEPHSKRVKLKLTIQSEVLTGAVLQQIFIVEF 133
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ N C + D W A VQ+ +L+ K+ A T IK +
Sbjct: 134 IVINQMCDDCRRA---EAKDFWRACVQVRQKCEFKKTLFYLEQLVLKYGAHVSTTAIKPV 190
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++FF++ A KFV+F+ +P + + ++LV+ K+ K+T VE+ I
Sbjct: 191 PTGVDFFYAKLQDARKFVDFITSHLPCRYSYAQELVTHDVKNNTYDYKHTFCVEVVPICH 250
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A LGN+ V+C +V I+++D TL+ +++ QYWR PF+AL S+
Sbjct: 251 GDLVCLPKKIAQALGNMNQLVVCFRVNTVISVIDSNTLQIADINSVQYWRDPFQALCQSK 310
Query: 235 QLVEYIVL-----DVKVAST----------------------ENDTILSTRTHLGHLLIL 267
+L E+ V+ D+++ T +++ + TR+HLGHLL
Sbjct: 311 RLSEFYVMNVEDIDIQLRGTYSHLSTKHRLVDIWVVPSNQIGQDNQEVCTRSHLGHLLKP 370
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +GYDL +N N L+ K PD I ++K Y +++ R+ R N +LK L ++
Sbjct: 371 GDLVLGYDLRSSNVNSTLLDEMKRDRIPDIILVRKVY-DRSIRQER--NNWELKRL-IQN 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL 350
DG C D + NE+E+FL DL
Sbjct: 427 DGDVC--DSSFMENEFEDFLEDL 447
>gi|50289849|ref|XP_447356.1| 60S ribosomal export protein NMD3 [Candida glabrata CBS 138]
gi|49526666|emb|CAG60293.1| unnamed protein product [Candida glabrata]
Length = 519
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 129/448 (28%), Positives = 202/448 (45%), Gaps = 120/448 (26%)
Query: 13 TVSCCKCGITMVSNASN--MCVTCLKSEVDITESLQKHANITPCP--------------- 55
TV CC CG T + +S MC C+K VDIT+ + + ANI+ C
Sbjct: 21 TVLCCNCG-TPIDGSSGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRA 79
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+I++KLTVQ E + I++Q+
Sbjct: 80 ELESRELLAICLRRLKGLNKVRLVDASFIWTEPHSRRIRIKLTVQGEAMANTIIQQTFEV 139
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV++ + C + + + W A VQ+ +LI KH+A
Sbjct: 140 EYVVIA--MQCADCARSYT---TNTWRATVQIRQKVPHKRTFLYLEQLILKHNAHVDTIN 194
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
I++ G++FF+ ++HAVK ++F+ VVP + + ++L+S+ T + K++ SVEI
Sbjct: 195 IQEAKDGLDFFYGQKNHAVKMLDFLNSVVPIKFKKSEELISQDTHTGASTYKFSYSVEIV 254
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A ++G++ FV+CTKV+N++ +DP TL+ L YWR+PF AL
Sbjct: 255 PICKDDLVVLPKKLAKSMGDISQFVLCTKVSNTLQFMDPMTLQTADLSPQVYWRTPFNAL 314
Query: 231 HTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYA 271
QLVE+IVLDV+ VA + ND + RTHLG + GD
Sbjct: 315 ADVSQLVEFIVLDVEPTGMSKGNRVLADITVARSSDLGMNDQVYYVRTHLGAICHAGDSV 374
Query: 272 IGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VD 328
+GY + +N N + PD + +KK Y QRK +K KLK + E +D
Sbjct: 375 MGYFVGNSNYNSDLFDGLNIDHVPDVVLVKKLY----QRKTKKSRNWKLKRMAKEHKDID 430
Query: 329 GSKCGADR------EKVNNEYEEFLRDL 350
S+ +R E+ +YE FL++L
Sbjct: 431 ASQDYNNRSQRQEMERAERDYELFLQEL 458
>gi|344307154|ref|XP_003422247.1| PREDICTED: 60S ribosomal export protein NMD3-like [Loxodonta
africana]
Length = 504
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 135/500 (27%), Positives = 206/500 (41%), Gaps = 137/500 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVLISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
++K+KLT+QKEV+ G I++Q V M
Sbjct: 75 SRELLALCLKKLKAPLAKVRLVDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQ--VFMV 132
Query: 82 RNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ + + D W A VQ+ +LI K+ ++K++
Sbjct: 133 DYVIQSQMCGDCHRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRVKEIH 192
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 193 DGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNMYNYKSTFSVEIVPICKD 252
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
A +LGN+ +C +VTN+I L+DP TL+ +D +W PF +L +Q
Sbjct: 253 NVVCLSPKLAQSLGNMNQICVCIRVTNAIHLIDPNTLQVADIDGSTFWSHPFNSLCHLKQ 312
Query: 236 LVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLILG 268
L E++V++ K + D RTHLGHLL G
Sbjct: 313 LEEFLVMECSIVRNVKRSAGAGMISKKHILGEVWVQKTSEMNTDKQYFCRTHLGHLLNPG 372
Query: 269 DYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
D +G+DL N ND + S PD + IKKSY +++ R KLK L +
Sbjct: 373 DLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRIKRQRRRN---WKLKELARDR- 428
Query: 329 GSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYLL 369
G K +YE+FL DL + D E P + L +L
Sbjct: 429 ----GNMDTKDERQYEDFLEDLEEDEAIRKNINIYRDSTIPVEGDADDEGAPRISLAEML 484
Query: 370 ADLDSSDK---EEGDDSMIE 386
DL S EEG M E
Sbjct: 485 EDLHISQDATGEEGASMMTE 504
>gi|449295746|gb|EMC91767.1| hypothetical protein BAUCODRAFT_304165 [Baudoinia compniacensis
UAMH 10762]
Length = 520
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 128/445 (28%), Positives = 194/445 (43%), Gaps = 111/445 (24%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ C CG I +A +C CLK VDIT ++K + C
Sbjct: 23 TILCYNCGAPIDGTQSAGALCSDCLKLTVDITRGIEKEGILLMCRDCDRWLSPPSQWVVA 82
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS-DV 78
+IKLK+TVQ+E +G I++Q+ DV
Sbjct: 83 APESRELLALCLRKLRGLSKSRIVDASFIWTEPHSRRIKLKITVQQEAFQGTILQQTFDV 142
Query: 79 VMSRNI-TCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
+ C + + + W A VQ+ +LI KH A IK
Sbjct: 143 EFVQQFKQCPDCAKSYTH---NTWRAVVQVRQKVPHKRTFLYLEQLILKHGAHKDTINIK 199
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRG--TKSRNCKCKYTCS---- 177
++ +GI+F+FS R+HA KFV+F+ V P +++ ++L+S T SR+ K Y+C
Sbjct: 200 EVHNGIDFYFSQRNHAEKFVDFLTSVSPVRTKKSQELISMDIHTSSRSYKFTYSCELVPV 259
Query: 178 -----VEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
V + A +GN+ P +C ++ ++ LLDP TL+ L YWR+PF L
Sbjct: 260 CKDDLVALPVKLAKQIGNISPLTLCYRIGTAVNLLDPNTLQVSDLSTPIYWRTPFAPLAD 319
Query: 233 SRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIG 273
+ LVE++V+D++ + NDT RTHLG +L GD +G
Sbjct: 320 VKDLVEFVVMDIEPIGPQKGRFLLAEATIARASDLGVNDTTYLVRTHLGGVLHAGDSVMG 379
Query: 274 YDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
Y L N+ E Y S + PD I +KK Y + + K R ++ E E+
Sbjct: 380 YHLTGTQFNNDNFEAIQESKQYSSTI-PDVILVKKHYTARRKTKARNWKLRRMAKEESEM 438
Query: 328 DGSKCGADREKVNNEYEEFLRDLMA 352
K ADRE+V+ YE+FL+DL A
Sbjct: 439 KPRKQDADREEVD--YEQFLQDLEA 461
>gi|367023072|ref|XP_003660821.1| hypothetical protein MYCTH_2299553 [Myceliophthora thermophila ATCC
42464]
gi|347008088|gb|AEO55576.1| hypothetical protein MYCTH_2299553 [Myceliophthora thermophila ATCC
42464]
Length = 524
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 134/455 (29%), Positives = 200/455 (43%), Gaps = 113/455 (24%)
Query: 2 VQAAGIFAVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP---- 55
+Q G T+ CC CG I ++A +C C+KS VDI++ +Q+ A + C
Sbjct: 12 MQQMGTARTGATILCCNCGAPIDGTASAGALCYDCIKSTVDISQGIQREATLHVCRDCDR 71
Query: 56 -----------------------------------------------KIKLKLTVQKEVL 68
+IK+K+TVQ V
Sbjct: 72 WLMPPNSWVAAAPESRELLSICLKRLRNLGKVRIVDARFVWTEPHSRRIKVKITVQDAVA 131
Query: 69 EGVIVEQSD--VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQK 112
+GV+++QS V + N C + + W AAVQ+ +LI K
Sbjct: 132 DGVMMQQSFEVVYIVANQQCRECAKSYT---ANVWRAAVQVRQKVSHKRTFLLLEQLILK 188
Query: 113 HDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKC 172
H A IK+ GI+F+F+ R+ A FV F+ VVP + + L+S T + N
Sbjct: 189 HQAHKDTINIKEEKDGIDFYFAQRNQAEAFVHFLKSVVPVHIKESRHLISADTHTGNKSY 248
Query: 173 KYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQ 221
K+ S E+ + A +LGN+ P V+C ++ S+ LLDP TL+ L +D
Sbjct: 249 KFNFSAELVPVCRDDLVALPLKLAKSLGNIAPLVLCYRIGTSVNLLDPNTLQTAELSSDA 308
Query: 222 YWRSPFKALHTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLG 262
YWR+PF+ L + ++VE+IV+D++ VA ND RTHLG
Sbjct: 309 YWRAPFQPLAGATEMVEFIVMDIEPTGQRKGKWVLGEATVARASDLGVNDNTYFARTHLG 368
Query: 263 HLLILGDYAIGYDLHEANQNDIEL---EN---YKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
LL GD +GY L N N L EN Y S + PD + +KK Y + + + R
Sbjct: 369 SLLKPGDSVMGYMLTGTNFNSEALDAIENSRAYGSTI-PDVVLVKKHYPNRRKNRRRN-- 425
Query: 317 PPKLKPLEM-EVDGSKCGADREKVNNEYEEFLRDL 350
KLK + E D AD+ ++ EYE+FLRD+
Sbjct: 426 -WKLKRMAKDEGDLLPKAADQARLEAEYEQFLRDV 459
>gi|403215841|emb|CCK70339.1| hypothetical protein KNAG_0E00710 [Kazachstania naganishii CBS
8797]
Length = 522
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 122/441 (27%), Positives = 194/441 (43%), Gaps = 106/441 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG + S+ MC C+K VDIT+ + + ANI+ C
Sbjct: 19 TVLCCNCGTPIDGSSGMVMCYDCIKMTVDITQGIPREANISFCRNCERFLQPPGQWIKAD 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVM 80
+I+LKLTVQ E + I++Q+ V
Sbjct: 79 LESRELLAICLRRLKGLTKVRLIDASFIWTEPHSRRIRLKLTVQGEAMANTIIQQTFEV- 137
Query: 81 SRNITCVNLVPGFMQTGPDH-WDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ P ++ H W A VQ+ +LI KH+A I +
Sbjct: 138 -EYVVLAMQCPDCAKSYTTHTWRAVVQIRQKVAHKRTFLYLEQLILKHNAHVDTVSISES 196
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T+S + K++ SVEI I
Sbjct: 197 KDGLDFFYAQKNHAVKMIDFLSAVVPVKYKKSEELISQDTQSGSSTYKFSYSVEIVPICR 256
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A ++GN+ FV+C+KV+N + LDP TL+ L YWR PF +L
Sbjct: 257 DDLVVLPKKLAKSMGNISQFVLCSKVSNYLQFLDPSTLQTAELSPSVYWREPFYSLADVS 316
Query: 235 QLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGYD 275
QL E+IVLDV + ND ++HLG + GD +GY
Sbjct: 317 QLTEFIVLDVDPTAISRGKLVLADITIARAADLGVNDQCYYIKSHLGAICHAGDTVMGYF 376
Query: 276 LHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGAD 335
+ +N N+ + PD + +KK Y+ KN RK+RK ++ ++D ++
Sbjct: 377 VANSNYNNQLYDALNGDYIPDVVLVKKLYRRKN-RKNRKWKLKRMAREHKDIDAAEDYTS 435
Query: 336 R------EKVNNEYEEFLRDL 350
R E+ +YE FL++L
Sbjct: 436 RAQKQEMERAEKDYELFLQEL 456
>gi|442762905|gb|JAA73611.1| Putative 60s ribosomal export protein nmd3, partial [Ixodes
ricinus]
Length = 460
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 122/443 (27%), Positives = 194/443 (43%), Gaps = 117/443 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 12 ILCCECGVAISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCALE 71
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLTVQKEV+ G I++Q VV
Sbjct: 72 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQVFVVDY 131
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ +LI K+ +IK++
Sbjct: 132 VVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMSQNTLRIKEI 188
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ + K T SVEI I
Sbjct: 189 HDGLDFYYSSKQHAQKMVEFLQCTVPWRYKASQRLISQDIHNNTYNYKSTFSVEIVPICK 248
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D + +W PF +L +
Sbjct: 249 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPDTLQVADIDGNTFWSHPFNSLCHPK 308
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 309 QLEEFIVMECSIVRDLKRKAGAGMVSKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 368
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + KS PD + IKKSY +++ R +LK L E
Sbjct: 369 GDLVLGFDLANCNLNDEHVNKMKSDRVPDVVLIKKSYDRTKRQRRRN---WRLKELARER 425
Query: 328 DGSKCGADREKVNNEYEEFLRDL 350
+ +R +Y++FL DL
Sbjct: 426 ENMDTDDER-----QYQDFLEDL 443
>gi|336471426|gb|EGO59587.1| hypothetical protein NEUTE1DRAFT_61157 [Neurospora tetrasperma FGSC
2508]
gi|350292520|gb|EGZ73715.1| NMD3-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 519
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 200/445 (44%), Gaps = 115/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I S+A +C C+KS VDI++ +Q+ A + C
Sbjct: 21 TILCCNCGAPIDGTSSAGALCYDCIKSTVDISQGIQREATLHFCKDCDRWLLPPASWVTA 80
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
++K+++TVQ +V +GV+++QS
Sbjct: 81 APESRELLSLCLKKLRNLGKVRITDARFIWTEPHSRRVKVQVTVQDQVADGVLMQQSFEV 140
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + + W AAVQ+ +LI KH A
Sbjct: 141 TYVVASQQ--CKDCAKSYT---ANVWRAAVQVRQKVTHKRTFLFLEQLILKHQAHRDTIN 195
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+ GI+F+F+ ++ A F+ F+ VVP ++ + L+S T + N KY SVEI
Sbjct: 196 IKEERDGIDFYFAQKNQAEGFISFLKSVVPVLTKESRHLISADTHTGNKSYKYNYSVEIV 255
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+ A ++GN+ P V+C ++ S+ LLDP TL+ + AD YWR+PF L
Sbjct: 256 PVCRDDLVALPLKLAKSIGNISPLVLCHRIGTSVNLLDPNTLQTAEVSADIYWRAPFHPL 315
Query: 231 HTSRQLVEYIVLD---------------VKVASTE----NDTILSTRTHLGHLLILGDYA 271
+ LVE+IV+D V+VA ND + TRTHLG L GD
Sbjct: 316 AGTPDLVEFIVMDIESTGVRKGKWLLSEVQVARASDLGVNDNVYFTRTHLGQHLHAGDSV 375
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N N LE Y S++ PD + +KK Y + + + R ++ E
Sbjct: 376 LGYMLEGTNFNSDALEAIESSKAYGSMI-PDVVLVKKHYPNRRRNRKRNWKLKRMAKDEG 434
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E+ +D+ K++ EYE FLRD+
Sbjct: 435 ELLPK--ASDQAKMDAEYEMFLRDV 457
>gi|389611415|dbj|BAM19319.1| nonsense-mediated mRNA decay protein [Papilio polytes]
Length = 491
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 128/467 (27%), Positives = 201/467 (43%), Gaps = 124/467 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC+C + N SNMCV CL++ VDIT+ + K A + C
Sbjct: 17 ILCCQCAAPIEPNPSNMCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPAEWLVCALE 76
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--M 80
+IK+KLTVQ EV+ G +++Q+ +V +
Sbjct: 77 SRELLALCLKRLKGLNRVKLIDAGFAWTEPHSKRIKVKLTVQGEVMGGAVLQQTFIVEFV 136
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
++ C Q D+W A VQ+ +LI KH A IK
Sbjct: 137 IQHQMCDACHRSEAQ---DYWRALVQVRQRANNRKTFYYLEQLILKHKAHENTLGIKPKH 193
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++FF++ + A K V+F+ V+P + +H K+L+S S K+T S+EI +S
Sbjct: 194 DGLDFFYATENTARKMVDFIQSVLPIKCQHSKKLISHDIHSNIYNYKFTYSIEIVPVSKD 253
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
H LG++ P + ++VT++I L+DP T + C L + YWR PF + +Q
Sbjct: 254 SVVCLPKKLTHQLGSISPICLVSRVTSTIHLIDPNTGQVCDLSSTVYWRHPFTPICNPKQ 313
Query: 236 LVEYIVLDVKV------------ASTENDTILS------------------TRTHLGHLL 265
LVEY V+D+ + N +++ T+THLGH+L
Sbjct: 314 LVEYTVMDIDILKEHEKKTFPGQGVVSNKHVIADVWVVKSSELGHDVNPIHTKTHLGHIL 373
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
GD +GY+L + N ND + PD +KK Y E++ R R+ KLK +
Sbjct: 374 KPGDTVLGYNLCDTNVNDANFDKLDKDSIPDVFLVKKYYGERSAR--RRARNWKLKHMAD 431
Query: 326 EVDGSKCGADREKVNNEYEEFLRDLMASVTDKE------DVPSVPLD 366
++ + N +Y EFL DL T ++ D VP+D
Sbjct: 432 DLHEGLGSS-----NEDYNEFLDDLEEDPTFRQNINIFKDASRVPID 473
>gi|19113989|ref|NP_593077.1| export adaptor Nmd3 (predicted) [Schizosaccharomyces pombe 972h-]
gi|1175492|sp|Q09817.1|NMD3_SCHPO RecName: Full=60S ribosomal export protein nmd3
gi|1019815|emb|CAA91191.1| export adaptor Nmd3 (predicted) [Schizosaccharomyces pombe]
Length = 498
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 123/435 (28%), Positives = 189/435 (43%), Gaps = 102/435 (23%)
Query: 10 VRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------- 55
+ T+ CC+CG+ NA+ MC+ C+K DIT + + + + C
Sbjct: 18 IASTILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMI 77
Query: 56 -------------------------------------KIKLKLTVQKEVLEGVIVEQSDV 78
+IK+KLTVQKE I++QS
Sbjct: 78 APLESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQ 137
Query: 79 V--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
V N C + + P W A Q+ ++I KH A I
Sbjct: 138 VEFYVNNTQCPDCARTYT---PHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNI 194
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
K+ GI+F+F R+HA+K VEF+ VVP + + ++L+S KS K+T S+EI
Sbjct: 195 KETKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVP 254
Query: 183 ISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I +L GN+ V+CTKV +I LDP TL+ C + YWR+PF AL
Sbjct: 255 ICKDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALA 314
Query: 232 TSRQLVEYIVLDVK----------------VASTENDTILSTRTHLGHLLILGDYAIGYD 275
+L E+IV DV + S++ T L TRTHLG +L G+ + Y
Sbjct: 315 DIPELTEFIVADVDLLGPTNGKYALADVELIKSSDGSTHL-TRTHLGGILNAGNTVLAYH 373
Query: 276 LHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGAD 335
L N N+ + + P+ + +KK+Y + ++K+R +LK + M+ D
Sbjct: 374 LAVTNFNNEVYDTLREDSIPEVVIVKKTYPQ-TKKKNRN---WRLKTIGMQKAEDVKKQD 429
Query: 336 REKVNNEYEEFLRDL 350
E+ +YE FL++L
Sbjct: 430 IERQERDYELFLQNL 444
>gi|322701682|gb|EFY93431.1| Nonsense-mediated mRNA decay protein 3, putative [Metarhizium
acridum CQMa 102]
Length = 514
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 133/490 (27%), Positives = 214/490 (43%), Gaps = 133/490 (27%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + +C C+K VDI++ +Q+ A + C
Sbjct: 22 TILCCNCGAPIDGTTATGALCFNCVKLTVDISQGIQREATLNFCRDCDRWLLPPTSWIVA 81
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+KLT+Q V +GV+++QS V
Sbjct: 82 MPESRELLALCLKKLRGLHKVRIVDASFVWTEPHSRRIKVKLTIQDAVQDGVLLQQSFEV 141
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + P ++ + W A VQ+ +L+ KH+A IK+
Sbjct: 142 VY--VVATQQCPECAKSYTANVWRACVQVRQKVLHKRTFLFLEQLMMKHNAHRETLNIKE 199
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
GI+FFFS ++ A KF++F+ VVP + ++L+S+ + K++ S EI I
Sbjct: 200 AKDGIDFFFSQKNQAEKFIDFLNSVVPVTVKASQELISQDVHTSKKSYKFSYSAEIVPIC 259
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+L GN+ P V+C K+ S+ L+DP TL+ + + YWR+PF++L +
Sbjct: 260 RDDLVAMPIKLAKQSGNISPLVLCHKIGTSVYLMDPQTLQTADIASPIYWRAPFRSLADA 319
Query: 234 RQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGY 274
+LVE+I++D++ +T ND TRTHLG+LL GD A+GY
Sbjct: 320 HELVEFIIMDIEPTNTRRGKWVLSEATVARASDLGVNDKTYFTRTHLGNLLQPGDSAMGY 379
Query: 275 DL-----HEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
L + A IE N S PD + +KK Y + + + R ++ E E+
Sbjct: 380 LLTGTMFNNAEYEAIEESNTYSSTIPDVVLVKKYYPRRRKNRRRNWKLRRMDKDEGELLP 439
Query: 330 SKCGADREKVNNEYEEFLRDL------------------------MASVTDKED--VPSV 363
K AD+++++ EYE+FLRD+ +A + ED VP V
Sbjct: 440 KK--ADQDRMDREYEQFLRDVEEDEELRAAMALYKNEKRAEEEMSVAETEEDEDDGVPQV 497
Query: 364 PLDYLLADLD 373
+D LL D D
Sbjct: 498 NMDELLDDFD 507
>gi|195134220|ref|XP_002011535.1| GI11082 [Drosophila mojavensis]
gi|193906658|gb|EDW05525.1| GI11082 [Drosophila mojavensis]
Length = 522
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 195/445 (43%), Gaps = 121/445 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC+CG+ + N +NMCVTCL++ VDITE++ K A + C
Sbjct: 23 ILCCECGVAIQPNPANMCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQASLE 82
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--M 80
+IK+KLTV E+ G +++Q +V
Sbjct: 83 SRELLAICLKKLKGLKEVKLVDAGFIWTEQHSKRIKVKLTVHGEISGGTVLQQVFIVEFT 142
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+N C + D W VQ+ +LI K+ A IK
Sbjct: 143 VQNQMCTDC---HRTEAKDFWRCLVQVRQRAENKKTFYYLEQLILKYKAHENTLGIKPEH 199
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA- 185
G++F++ +HA + V+F+ +VP + K+L+S S N KY SVEI+ IS
Sbjct: 200 GGLDFYYVSENHARRMVDFLQTMVPVKVTTSKRLISHDIHSNNYNYKYNWSVEIAPISKD 259
Query: 186 ----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
LGN+ P + +V++SI L+DP T + +++ Y+R+PF+A+ +Q
Sbjct: 260 SAVCLTKKLRQQLGNISPVCLVNRVSSSIHLIDPLTAQIAEVNSQVYFRAPFEAICNPKQ 319
Query: 236 LVEYIVLDVKVA---------------------------STE---NDTILSTRTHLGHLL 265
LVEYIV+D+ V S+E ND + TR+HLGH+L
Sbjct: 320 LVEYIVMDIDVIHDKDRKTYPGQGMVSFKHALCDIWVVRSSELGINDNPVHTRSHLGHVL 379
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GD +GY+ EAN N+ E + + PD + ++K Y + + R KLK L
Sbjct: 380 KVGDSVMGYNTAEANINNPEFDKLTPNLIPDVVLVRKHYDRQTRLSQRL---WKLKHLAD 436
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E A E+ +Y EFL D+
Sbjct: 437 E-------ATDERSKYDYHEFLDDI 454
>gi|345571064|gb|EGX53879.1| hypothetical protein AOL_s00004g538 [Arthrobotrys oligospora ATCC
24927]
Length = 523
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/438 (28%), Positives = 198/438 (45%), Gaps = 104/438 (23%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHAN-----------------ITPC 54
TV CC CG+ M ++ MC C+K+ VDI+E +Q+ A IT
Sbjct: 19 TVLCCNCGVPMDGTSGMAMCYDCIKTTVDISEGVQREATLHFCRGCDRFLQPPQHWITAA 78
Query: 55 P----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVM 80
P ++K+K+TVQ+E E I++QS V
Sbjct: 79 PESRELLALCLRKLRGLNKVRIIDASFIWTEPHSRRVKVKITVQQEAFEKTILQQSFEV- 137
Query: 81 SRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ P ++ + W A +Q+ +LI KH+A I+++
Sbjct: 138 -EYVVAYQQCPDCAKSYTANTWRACIQMRQKVSHKRTFLWLEQLILKHNAHRDCINIREV 196
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++FFF R+HA K ++F+ V P +++ ++L+S+ + K+T SVE+ I
Sbjct: 197 KDGLDFFFLQRTHAQKMLDFLSSVSPIKTKKSEELISQDIHTSTKSFKFTYSVELIPICK 256
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ P V+C KV N+ +DP TL+ C + YWR+PF ++ +
Sbjct: 257 DDLVVLPIKMAKSLGNINPIVLCNKVGNATHYIDPNTLQTCEIATPVYWRAPFGSIADAS 316
Query: 235 QLVEYIVLDVK---------------VASTEN----DTILSTRTHLGHLLILGDYAIGYD 275
L E+IVLD++ +A + DT RTHLG +L GD A+GY
Sbjct: 317 VLTEFIVLDIEPLGPTKGRHVLADATIAKASDMGVSDTTYLIRTHLGAVLHPGDSAMGYF 376
Query: 276 LHEANQNDIELENYKSLVP---PDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKC 332
L N+I E + P P+ I +KK Y + + K R ++ E E+ K
Sbjct: 377 LSGTVFNNIHFEEVERHEPSRIPEVILVKKHYPRRKKHKSRNWRLKRMARDEGELLPKK- 435
Query: 333 GADREKVNNEYEEFLRDL 350
AD+EK+ E+E F+RD+
Sbjct: 436 -ADQEKMEREFEMFMRDV 452
>gi|402587812|gb|EJW81746.1| NMD3 family protein [Wuchereria bancrofti]
Length = 480
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 192/430 (44%), Gaps = 108/430 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG ++ NA NMC+ C++S +DITE + K C
Sbjct: 14 ILCCQCGASIEPNAMNMCIACVRSRIDITEGIPKQYRAFMCKFCNRWLVPPNGWLHAERE 73
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++KLKLT+QKEVL G +++Q +V
Sbjct: 74 SKEMLSILLKKLKPTMTKVRLTDASFVWTEPHSKRVKLKLTIQKEVLTGAVLQQVFIVEF 133
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHA 139
+ N C + D W A VQ H A T IK + G++FF++ A
Sbjct: 134 VVMNQMCDDCR---RVEAKDFWRACVQ------HSAHLNTTAIKPVATGVDFFYAKLQDA 184
Query: 140 VKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI-----------SAHNL 188
KF++F+ +P + + ++LV+ KS K+T VE+ I +A L
Sbjct: 185 RKFIDFITSHLPCKYSYAQELVTHDVKSNIYDYKHTFCVEVVPICRGDLVCLPKKTAQAL 244
Query: 189 GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK--- 245
GN+ V+C +V I+++DP TL+ ++A QYWR PF+ L S++L E+ V+DV+
Sbjct: 245 GNMNQLVVCLRVNTVISVIDPSTLQIADINATQYWRDPFQTLCQSKRLSEFYVVDVEDID 304
Query: 246 -VASTENDTILS------------------------TRTHLGHLLILGDYAIGYDLHEAN 280
+ T + LS TR+HLGHLL GD +GYDL +N
Sbjct: 305 FIQLTAGCSHLSTKHRLADIWVVPSNQIGQENQEVCTRSHLGHLLKPGDLVLGYDLRSSN 364
Query: 281 QNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVN 340
N L++ ++ D I ++K Y +++ R KLK L ++ DG D +
Sbjct: 365 VNSALLDDMRTDRIADIILVRKVYDRYIRQERRN---WKLKRL-IQNDGDV--YDSSSMQ 418
Query: 341 NEYEEFLRDL 350
NE+E FL DL
Sbjct: 419 NEFENFLEDL 428
>gi|290991606|ref|XP_002678426.1| predicted protein [Naegleria gruberi]
gi|284092038|gb|EFC45682.1| predicted protein [Naegleria gruberi]
Length = 623
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/398 (32%), Positives = 187/398 (46%), Gaps = 105/398 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK-------- 56
V CC CG+ +N +NMC+ C+KS+VDIT+ + K I C PK
Sbjct: 88 VLCCLCGVVTPANPANMCLNCIKSQVDITDGITKSETIFFCRECERYLQPPKYWIKCDME 147
Query: 57 ----------------------------------IKLKLTVQKEVL-EGVIVEQSDVV-- 79
+K+K+T+QKEVL G I++QS VV
Sbjct: 148 SKELLTLCLKRIHGLNRVKLIDAKFLWTEPHSRRLKVKITIQKEVLGNGTILQQSFVVEF 207
Query: 80 MSRNITC-VNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ RN C V + T W+A VQ+ +LI KH+ +A IK+
Sbjct: 208 IVRNQQCEVCQKSHTLYT----WNAVVQVRQKLDHKRTFLFLEQLILKHNVHEKAINIKE 263
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FFFS RSHA K V+F+ V +S+ ++LV+ KS KY+ S+EI+ I
Sbjct: 264 EADGLDFFFSERSHAKKLVDFLQSVASIKSKTGERLVTHDAKSNIFNFKYSFSLEIAPIC 323
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+L G +GP V+CTKV +I +DP TL+ LD YWR PF + TS
Sbjct: 324 REDLICLPKRLSTSMGGIGPLVLCTKVNKNIFFVDPTTLQTNELDGALYWRQPFFSALTS 383
Query: 234 RQLVEYIVLD--------------VKVASTENDTILS----TRTHLGHLLILGDYAIGYD 275
RQL E+ V+D +V +D + S ++HLG LL GD + YD
Sbjct: 384 RQLSEFTVVDNPNNLPAANGKYILCEVQIVRSDELGSDPIFVKSHLGALLHPGDTIMCYD 443
Query: 276 LHEANQNDIELENYKSLVP---PDTIKIKKSYKEKNQR 310
L +A ++ L +YK+ P+ I +KK YK++ +R
Sbjct: 444 LRKAQYDEGLLADYKNSQTEKLPEVIIVKKIYKKRKER 481
>gi|85105436|ref|XP_961964.1| 60S ribosomal export protein NMD3 [Neurospora crassa OR74A]
gi|28923552|gb|EAA32728.1| hypothetical protein NCU08663 [Neurospora crassa OR74A]
Length = 519
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 200/445 (44%), Gaps = 115/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I S+A +C C+KS VDI++ +Q+ A + C
Sbjct: 21 TILCCNCGAPIDGTSSAGALCYDCIKSTVDISQGIQREATLHFCKDCDRWLLPPASWVTA 80
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
++K+++TVQ +V +GV+++QS
Sbjct: 81 APESRELLSLCLKKLRNLGKVRITDARFIWTEPHSRRVKVQVTVQDQVADGVLMQQSFEV 140
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + + W AAVQ+ +LI +H A
Sbjct: 141 TYVVASQQ--CKDCAKSYT---ANVWRAAVQVRQKVTHKRTFLFLEQLILRHQAHRDTIN 195
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+ GI+F+F+ ++ A F+ F+ VVP ++ + L+S T + N KY SVEI
Sbjct: 196 IKEEKDGIDFYFAQKNQAEGFISFLKSVVPVLTKESRHLISADTHTGNKSYKYNYSVEIV 255
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+ A ++GN+ P V+C ++ S+ LLDP TL+ + AD YWR+PF L
Sbjct: 256 PVCRDDLVALPLKLAKSIGNISPLVLCHRIGTSVNLLDPNTLQTAEVSADIYWRAPFHPL 315
Query: 231 HTSRQLVEYIVLD---------------VKVASTE----NDTILSTRTHLGHLLILGDYA 271
+ LVE+IV+D V+VA ND + TRTHLG L GD
Sbjct: 316 AGTPDLVEFIVMDIESTGVRKGKWLLSEVQVARASDLGVNDNVYFTRTHLGQHLHAGDSV 375
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N N LE Y S++ PD + +KK Y + + + R ++ E
Sbjct: 376 LGYMLEGTNFNSDALEAIESSKAYGSMI-PDVVLVKKHYPNRRRNRKRNWKLKRMAKDEG 434
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E+ +D+ K++ EYE FLRD+
Sbjct: 435 ELLPK--ASDQAKMDAEYEMFLRDV 457
>gi|407853692|gb|EKG06571.1| hypothetical protein TCSYLVIO_002318 [Trypanosoma cruzi]
Length = 582
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 175/405 (43%), Gaps = 109/405 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC CG+ + SN SNMC +CL+S VDITESLQK I CP
Sbjct: 66 VLCCMCGLLIDSNPSNMCPSCLRSHVDITESLQKEYIIVYCPECTRYLQPPQYWSHADLE 125
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
++K+KL +QKEVL ++++Q+ VV
Sbjct: 126 SRELLTICLKRIKGMSRNVFKLVDANFIWTEPHSKRLKVKLVLQKEVLNNIVIQQACVVE 185
Query: 80 ----MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
+ TC + TG WDA VQ+ +LI KH +
Sbjct: 186 YVVLWQQCPTCQKVA-----TGQPQWDACVQVRQKTTHKKTFLFLEQLILKHKLHESFIR 240
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
++ G++FFF+ +SHA+ F+EF+ P R QLVS +K+ +T SVEI+
Sbjct: 241 VESKPDGLDFFFAHKSHAMNFLEFLNRNSPITRRDAVQLVSHDSKNNTAVQHHTFSVEIA 300
Query: 182 AISAHNL------------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ +L G LGP VI KV +SI LLDP TLR YW+ PF
Sbjct: 301 PLCREDLLLLPYQNYYLKLGGLGPLVIVHKVYSSIVLLDPKTLRAGEFTGQYYWKKPFPT 360
Query: 230 LHTSRQLVEYIVLDVKVASTENDTI--------LSTR----------THLGHLLILGDYA 271
+SR+L E+ VL+ N LS+ +HLG LL GD A
Sbjct: 361 FMSSRELTEFYVLECTPTGVTNGRYQLGVVTLCLSSEVGQGREWIVTSHLGGLLQPGDLA 420
Query: 272 IGYDLHEANQNDIELEN--YKSLVPPDTIKIKKSYKEKNQRKHRK 314
+GY L N N+ E ++ YK + ++K + + R+H++
Sbjct: 421 MGYLLEGKNFNNEEWDSQRYKPEQLQEVFLVRKHFPSQRARRHKR 465
>gi|212530812|ref|XP_002145563.1| 60S ribosomal export protein NMD3 [Talaromyces marneffei ATCC
18224]
gi|210074961|gb|EEA29048.1| nonsense-mediated mRNA decay protein 3 [Talaromyces marneffei ATCC
18224]
Length = 522
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 196/442 (44%), Gaps = 110/442 (24%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I ++A +C C+K VDI++ +Q+ + + C
Sbjct: 23 TILCCNCGAPIDGTASAGALCHDCIKLTVDISQDIQRESALHFCRDCERWLQPPNTWVSA 82
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+K+T+Q+E +G I++Q+ V
Sbjct: 83 ALESRELLALCLRKLRGLSRVRIIDASFIWTEPHSRRIKVKITIQQEAFQGTILQQTFEV 142
Query: 80 MSRNITCVNLVPGFMQTGPDH-WDAAVQL--------------ELIQKHDAPARATKIKK 124
+ P ++ H W A VQ+ +L+ KH+A IK+
Sbjct: 143 --EYVVSTQQCPDCAKSFTHHSWRACVQIRQKVPHKRSFLYLEQLMLKHNAHRDTINIKE 200
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FFFS R+HA K V+F+ V P + + ++L+S + + K T SVE+ I
Sbjct: 201 AKDGLDFFFSQRNHAEKMVDFLQSVTPVRVKKSQELISMDIHTSVRQYKITYSVELIPIC 260
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L
Sbjct: 261 KDDLVALPIKLARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADV 320
Query: 234 RQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYAIGY 274
+QLVE++V+D++ VA ND TRTHLG +L +GD +GY
Sbjct: 321 QQLVEFVVMDIEPVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGVLHVGDSVLGY 380
Query: 275 DLHEANQND------IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
L N ND E Y S + PD + ++K Y K + K R KLK + E +
Sbjct: 381 HLTGTNFNDPNFDAIQESSQYGSTI-PDVMLVRKFYARKKKPKSRN---WKLKRMNYEEE 436
Query: 329 GSKCGADREKVNNEYEEFLRDL 350
D +++ ++E FLRD+
Sbjct: 437 EPSRKQDSDRLEADFEMFLRDI 458
>gi|25143170|ref|NP_492114.2| Protein T25G3.3 [Caenorhabditis elegans]
gi|19171243|emb|CAA96689.2| Protein T25G3.3 [Caenorhabditis elegans]
Length = 513
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 136/507 (26%), Positives = 209/507 (41%), Gaps = 140/507 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
++CC+CG+ + N +NMC CL+S VDITE + + I C
Sbjct: 13 IACCECGVAIEPNPANMCSGCLRSRVDITEGITRQCTIYMCKFCDRYFVPPSAWMRAELE 72
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
+IK+K+T+QKEV I++Q+ VV+
Sbjct: 73 SKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQA-VVVE 131
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
+ D W A VQ+ +L+ KH A T +K +
Sbjct: 132 FTVHSQLCDDCRRAEAKDFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECTGVKPVPT 191
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN 187
GI+F+F+ + A KFV+F+ V+P + + ++LVS TK+ K+T VEI I N
Sbjct: 192 GIDFYFAKQQEARKFVDFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCVEIVPICRDN 251
Query: 188 L-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
+ GN+ V+C +V+N I L+DP L+ + A +WR PF +L +QL
Sbjct: 252 IVCLPKKQAQQYGNMSQIVLCLRVSNVITLIDPNNLQLVDVQATNFWREPFDSLCGPKQL 311
Query: 237 VEYIVLDVK----------------------VASTENDTI-------LSTRTHLGHLLIL 267
E+ VLDV+ V +D + LS RTH+GHLL
Sbjct: 312 TEFYVLDVEPVNNFERKAGHGYVSKKHELADVWLVRSDQVGMSDAQSLSARTHIGHLLSP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD + +D+ N N+ + PD I ++K + + R+ KLK L V
Sbjct: 372 GDLVMAFDMKNCNVNNATFDAMNIDNVPDAIIVRKVFDRTRRTAKRQ---WKLKRL--VV 426
Query: 328 DGSKCGADREKVNNEYEEFLRDLMASVT--------------------DKEDVPSVP-LD 366
DG+ G + V +E++ F+ D+ D ED P P L
Sbjct: 427 DGNIVGNETASVADEFQGFMEDIEEDALMREKINIYKDAEKGPNVDGDDAEDHPDAPTLA 486
Query: 367 YLLADLDSSDKE-------EGDDSMIE 386
+L DL D+E E D++M E
Sbjct: 487 EMLDDLKFDDEEMKEAESAEDDEAMQE 513
>gi|326473522|gb|EGD97531.1| nonsense-mediated mRNA decay protein [Trichophyton tonsurans CBS
112818]
Length = 524
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/445 (28%), Positives = 196/445 (44%), Gaps = 113/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K +DI+E +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQPPAQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
++K+K+T+Q+E +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGTILQQAFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A+VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CPECAKSYT---VNTWRASVQVRQKVPHKRTFLYLEQLILKHGAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ G++F+FS R+HA K V+F+ V P + + +QL+S + + K T S E+
Sbjct: 199 IKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFSAELI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V SI +LDP TL+ + A YWRSPF L
Sbjct: 259 PICKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPAAIYWRSPFANL 318
Query: 231 HTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYA 271
++LVEY+V+D++ VA + NDT RTHLG +L GD
Sbjct: 319 ADIQELVEYVVMDIEAIGQSSGRYHLAEATVARSSDLGVNDTTYFARTHLGGILHPGDTV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N N+ E Y S + PD I +KK Y K + K R +L E
Sbjct: 379 MGYHLTGTNFNNANFEEIEASHTYGSTI-PDVILVKKHYPRKRKNKKRNWRLKRLDREEE 437
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
+ SK ++ ++ +++E FLRD+
Sbjct: 438 DERPSKKQSNNNRLEDDFEMFLRDV 462
>gi|94468868|gb|ABF18283.1| NMD protein [Aedes aegypti]
Length = 510
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/450 (27%), Positives = 197/450 (43%), Gaps = 121/450 (26%)
Query: 10 VRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC--------------- 54
++ + CC+CG + N SNMCV CL++ VDIT ++ K A + C
Sbjct: 18 MKNKILCCECGTPIEPNPSNMCVACLRTHVDITANIPKQAVVFFCRNCERYLNPPSEWVQ 77
Query: 55 ------------------------------------PKIKLKLTVQKEVLEGVIVEQSDV 78
+IK+KLTV EV++GV+++Q V
Sbjct: 78 CSLESKELLSVCLKRLKGLKEVKLVDAGFVWTEPHSKRIKVKLTVHGEVMDGVVLQQVFV 137
Query: 79 V--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
V N C + D W VQ+ ++I KH A I
Sbjct: 138 VEFTVNNQMCDDC---HRTEAKDFWRCLVQVRQKSINKKTLFYLEQMILKHKAHENTLGI 194
Query: 123 KKM-DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
K G++F+++ +HA K V+FV V+P + + K+L+S S + KY+ ++++
Sbjct: 195 KPSPSGGLDFYYATDAHARKMVDFVQAVLPVKVTNSKKLISHDIHSNSYNYKYSYALDVV 254
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
IS LG++ P + TKV N++ L+DP T + + +W++PF+A+
Sbjct: 255 PISKGSLVCLNKKLQQQLGHISPICLVTKVANAVHLMDPRTAQLAEVQNMAFWKNPFEAI 314
Query: 231 HTSRQLVEYIVLDVKVASTE------------------------------NDTILSTRTH 260
+Q++E+IV+D+++ N+ + TR+H
Sbjct: 315 CNPKQMIEFIVMDIEIVRDNEKKNFPGQGPVSFRHVLADVWVVKASELGINENTIHTRSH 374
Query: 261 LGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKL 320
LGHLL GD +GYDL +AN N+ + E K PD + IKK Y + +++ R KL
Sbjct: 375 LGHLLKPGDSVMGYDLQDANINNADFEKLKQDSVPDLLLIKKYYDKSARKQTRN---WKL 431
Query: 321 KPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
K L +V A + N+Y EFL DL
Sbjct: 432 KHLTEDV------ALDTDIENDYNEFLEDL 455
>gi|71414710|ref|XP_809448.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873830|gb|EAN87597.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 609
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 174/405 (42%), Gaps = 109/405 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC CG+ + SN SNMC +CL+S VDITESLQK I CP
Sbjct: 89 VLCCMCGLLIDSNPSNMCPSCLRSHVDITESLQKEYIIVYCPECTRYLQPPQYWSRADLE 148
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
++K+KL +QKEVL ++++Q+ VV
Sbjct: 149 SRELLTICLKRIKGMSRNVFKLVDANFIWTEPHSKRLKVKLVLQKEVLNNIVIQQACVVE 208
Query: 80 ----MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
+ TC + TG WDA VQ+ +LI KH +
Sbjct: 209 YVVLWQQCPTCQKVA-----TGQPQWDACVQVRQKTTHKKTFLFLEQLILKHKLHESFIR 263
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
++ G++FFF+ +SHA+ F+EF+ P R QLVS +K+ +T SVEI+
Sbjct: 264 VESKPDGLDFFFAHKSHAMNFLEFLNRNSPITRRDAVQLVSHDSKNNTAVQHHTFSVEIA 323
Query: 182 AISAHNL------------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ +L G LGP VI KV +SI LLDP TLR YW+ PF
Sbjct: 324 PLCREDLLLLPYQNYYLKLGGLGPLVIVHKVYSSIVLLDPKTLRAGEFTGQYYWKKPFPT 383
Query: 230 LHTSRQLVEYIVLDVKVASTENDTI--------LSTR----------THLGHLLILGDYA 271
+SR+L E+ VL+ N LS+ +HLG LL GD A
Sbjct: 384 FMSSRELTEFYVLECTPTGVTNGRYQLGVVTLCLSSEVGQGREWIVTSHLGGLLQPGDLA 443
Query: 272 IGYDLHEANQNDIEL--ENYKSLVPPDTIKIKKSYKEKNQRKHRK 314
+GY L N N+ E + YK + ++K + + R+H++
Sbjct: 444 MGYLLEGKNFNNEEWDSQRYKPEQLQEVFLVRKHFPSQRARRHKR 488
>gi|157133750|ref|XP_001662996.1| nonsense-mediated mrna decay protein [Aedes aegypti]
gi|108881501|gb|EAT45726.1| AAEL003039-PA [Aedes aegypti]
Length = 510
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/449 (27%), Positives = 196/449 (43%), Gaps = 121/449 (26%)
Query: 11 RKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------------- 54
+ + CC+CG + N SNMCV CL++ VDIT ++ K A + C
Sbjct: 19 KNKILCCECGTPIEPNPSNMCVACLRTHVDITANIPKQAVVFFCRNCERYLNPPSEWVQC 78
Query: 55 -----------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+KLTV EV++GV+++Q VV
Sbjct: 79 SLESKELLSVCLKRLKGLKEVKLVDAGFVWTEPHSKRIKVKLTVHGEVMDGVVLQQVFVV 138
Query: 80 --MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
N C + D W VQ+ ++I KH A IK
Sbjct: 139 EFTVNNQMCDDC---HRTEAKDFWRCLVQVRQKSINKKTLFYLEQMILKHKAHENTLGIK 195
Query: 124 KM-DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
G++F+++ +HA K V+FV V+P + + K+L+S S + KY+ ++++
Sbjct: 196 PSPSGGLDFYYATDAHARKMVDFVQAVLPVKVTNSKKLISHDIHSNSYNYKYSYALDVVP 255
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
IS LG++ P + TKV N++ L+DP T + + +W++PF+A+
Sbjct: 256 ISKGSLVCLNKKLQQQLGHISPICLVTKVANAVHLMDPRTAQLAEVQNMAFWKNPFEAIC 315
Query: 232 TSRQLVEYIVLDVKVASTE------------------------------NDTILSTRTHL 261
+Q++E+IV+D+++ N+ + TR+HL
Sbjct: 316 NPKQMIEFIVMDIEIVRDNEKKNFPGQGPVSFRHVLADVWVVKASELGINENTIHTRSHL 375
Query: 262 GHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLK 321
GHLL GD +GYDL +AN N+ + E K PD + IKK Y + +++ R KLK
Sbjct: 376 GHLLKPGDSVMGYDLQDANINNADFEKLKQDSVPDLLLIKKYYDKSARKQTRN---WKLK 432
Query: 322 PLEMEVDGSKCGADREKVNNEYEEFLRDL 350
L +V A + N+Y EFL DL
Sbjct: 433 HLTEDV------ALDTDIENDYNEFLEDL 455
>gi|115495387|ref|NP_001068888.1| 60S ribosomal export protein NMD3 [Bos taurus]
gi|122132352|sp|Q08DS5.1|NMD3_BOVIN RecName: Full=60S ribosomal export protein NMD3
gi|115305166|gb|AAI23589.1| NMD3 homolog (S. cerevisiae) [Bos taurus]
gi|296491130|tpg|DAA33203.1| TPA: 60S ribosomal export protein NMD3 [Bos taurus]
Length = 503
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 136/492 (27%), Positives = 207/492 (42%), Gaps = 136/492 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ +LI K+ +IK++
Sbjct: 135 VVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT+ I L+DP TL+ +D + +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + KS PD + IKKSY +++ R KLK E+
Sbjct: 372 GDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRTRRQRRRN---WKLK--ELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 427 DRENTDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEG 380
L DL S G
Sbjct: 484 LEDLHISQDATG 495
>gi|322706779|gb|EFY98359.1| nonsense-mediated mRNA decay protein 3 [Metarhizium anisopliae
ARSEF 23]
Length = 515
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/441 (27%), Positives = 200/441 (45%), Gaps = 107/441 (24%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + +C C+K VDI++ +Q+ A + C
Sbjct: 22 TILCCNCGAPIDGTTATGALCFNCVKLTVDISQGIQREATLNFCRDCDRWLLPPNSWIVA 81
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+KLT+Q V +GV+++QS V
Sbjct: 82 MPESRELLALCLKKLRGLHKVRIVDASFVWTEPHSRRIKVKLTIQDAVQDGVLLQQSFEV 141
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + P ++ + W A VQ+ +LI KH+A IK+
Sbjct: 142 VY--VVATQQCPECAKSYTANVWRACVQVRQKVLHKRTFLFLEQLIMKHNAHRDTLNIKE 199
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
GI+FFFS ++ A KF++F+ VVP + ++L+S+ + K++ S EI I
Sbjct: 200 AKDGIDFFFSQKNQAEKFIDFLNSVVPVTVKASQELISQDVHTSKKSYKFSYSAEIVPIC 259
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+L GN+ P V+C K+ S+ L+DP TL+ + + YWR+PF++L +
Sbjct: 260 RDDLVAMPIRLAKQSGNISPLVLCHKIGTSVYLMDPQTLQTADIASPIYWRAPFRSLADA 319
Query: 234 RQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGY 274
+LVE+I++D+++ +T ND TRTHLG+ L GD A+GY
Sbjct: 320 HELVEFIIMDIELTNTRRGKWVLSEATVARASDLGVNDKTYFTRTHLGNFLQPGDSAMGY 379
Query: 275 DLHEANQNDIELE-----NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
L N+ E E N S PD + +KK Y + + + R ++ E E+
Sbjct: 380 LLTGTMFNNPEYEAIEESNTYSSTIPDVVLVKKHYPRRRKNRRRNWKLRRMGKDEGELLP 439
Query: 330 SKCGADREKVNNEYEEFLRDL 350
K AD+++++ EYE+FLRD+
Sbjct: 440 KK--ADQDRMDREYEQFLRDV 458
>gi|406603759|emb|CCH44784.1| 60S ribosomal export protein [Wickerhamomyces ciferrii]
Length = 512
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 133/448 (29%), Positives = 194/448 (43%), Gaps = 116/448 (25%)
Query: 10 VRKTVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP------------- 55
V TV CC CG+ M S MC C+K VDITE + + AN++ C
Sbjct: 14 VAATVLCCNCGVPMDGSTGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPQQWI 73
Query: 56 --------------------------------------KIKLKLTVQKEVLEGVIVEQS- 76
+IK+KLTVQ E + IV+QS
Sbjct: 74 RCELESRELLALCLRRLKGLNKVRLIDASFIWTEPHSRRIKVKLTVQGEAMANTIVQQSF 133
Query: 77 ---DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARA 119
VV++ + C + + + W AAVQ+ +LI +H A
Sbjct: 134 EVEYVVIA--MQCPDCAKSYT---VNTWKAAVQIRQKVSHKRTFLYLEQLILRHSAHVDT 188
Query: 120 TKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVE 179
I++ G++FF+S RSHA+K ++F+G V P +S+ ++LVS+ + K+T SVE
Sbjct: 189 ISIQESRDGLDFFYSQRSHALKMIDFLGSVAPIKSKKSEELVSQDIHAGTSSYKFTFSVE 248
Query: 180 ISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFK 228
I I A +LG+L V+C+KV+N++ LD TL+ L Y++ PF
Sbjct: 249 IVPICRDDLVVLPKKLAQSLGSLSQLVLCSKVSNTLQFLDVNTLKTGDLSPQVYYKKPFM 308
Query: 229 ALHTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILGD 269
+L + QLVE+IVLDV+ ND R+HLG LL GD
Sbjct: 309 SLSDASQLVEFIVLDVEPTGVTKGKYVLADVTCARAADLGSNDKEYYVRSHLGALLHPGD 368
Query: 270 YAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME--- 326
+GY +N N ++ PD I +KK Y QRK RK KLK + E
Sbjct: 369 SVMGYYTVNSNYNHDLWDSLDRDNLPDVILVKKHY----QRKTRKNRNWKLKRMAREHQD 424
Query: 327 ----VDGSKCGADREKVNNEYEEFLRDL 350
D + E+ +YE FL++L
Sbjct: 425 IVANEDSRAARQEMERAEKDYEVFLQEL 452
>gi|268562890|ref|XP_002638695.1| Hypothetical protein CBG11892 [Caenorhabditis briggsae]
Length = 513
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 123/453 (27%), Positives = 191/453 (42%), Gaps = 112/453 (24%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
++CC+CG+ + N +NMC CL+S VDITE + K I C
Sbjct: 13 IACCECGVAIEPNPANMCSGCLRSRVDITEGITKQCTIYMCKFCDRYFVPPSAWMRAELE 72
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
+IK+K+T+QKEV I++Q+ VV+
Sbjct: 73 SKELLSICLKKLKPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQA-VVVE 131
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
+ D W A VQ+ +L+ KH A T +K +
Sbjct: 132 FTVHSQLCDDCRRAEAKDFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECTGVKPVPT 191
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI---- 183
GI+FFF+ + A FV F+ V+P + + ++LVS TK+ K+T VEI I
Sbjct: 192 GIDFFFAKQQEARTFVNFLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCVEIVPICRDN 251
Query: 184 -------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A LGN+ ++C +V+N I L+DP L+ + A +WR PF++L +QL
Sbjct: 252 IVCIPKKQAQQLGNMSQILLCLRVSNVITLIDPSNLQLVDVQATNFWREPFESLCGPKQL 311
Query: 237 VEYIVLDV----------------------KVASTENDTI-------LSTRTHLGHLLIL 267
E+ VL+V V +D + L RTHLGHLL
Sbjct: 312 TEFYVLEVDPIDNFERKAGHGYVSKKHELANVWLVRSDQVGMSDAQPLYARTHLGHLLSP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD + +D+ N N+ + K PD I ++K + + R+ KLK L V
Sbjct: 372 GDLVMAFDMKNCNVNNATFDAMKIDNIPDAIIVRKVFDRTRRTAKRQ---WKLKRL--VV 426
Query: 328 DGSKCGADREKVNNEYEEFLRDLMASVTDKEDV 360
DG+ G + V +E++ F+ D+ +E +
Sbjct: 427 DGNIVGNETASVADEFQGFMEDIEEDALMREKI 459
>gi|323308785|gb|EGA62023.1| Nmd3p [Saccharomyces cerevisiae FostersO]
Length = 518
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 135/500 (27%), Positives = 211/500 (42%), Gaps = 139/500 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG + S MC C+K VDIT+ + + ANI+ C
Sbjct: 16 TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ EV+ I++Q+ V
Sbjct: 76 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEVMTNTIIQQTFEVE 135
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 136 YIVIAMQCPDCARSYTT---NTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISE 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T + K++ SVEI I
Sbjct: 193 AKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPIC 252
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ FV+C+K++N++ +DP TL+ L YWR+PF AL
Sbjct: 253 KDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADV 312
Query: 234 RQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV VA T ND + R+HLG + GD +GY
Sbjct: 313 TQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGY 372
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N + PD + +KK Y QRK +K KLK + E +D S
Sbjct: 373 FIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMAKEHKDIDASL 428
Query: 332 CGADR------EKVNNEYEEFLRDLMASVTDKEDV------------------------- 360
R E+ +YE FL++L ++ V
Sbjct: 429 DYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDA 488
Query: 361 PSVPLDYLLADLDSSDKEEG 380
P + +D LL +LD E+G
Sbjct: 489 PQINIDELLDELDEMTLEDG 508
>gi|190347658|gb|EDK39975.2| histone acetyltransferase GCN5 [Meyerozyma guilliermondii ATCC
6260]
Length = 658
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 120/432 (27%), Positives = 196/432 (45%), Gaps = 104/432 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S+ MC C+K VDITE + + AN++ C
Sbjct: 174 TVLCCNCGVPMDGSSGLVMCHDCIKLTVDITEGIPREANLSFCRNCERFLQPPTQWIRCA 233
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 234 LESRELLALCLRKLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIIQQTFEVE 293
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I++
Sbjct: 294 YVVVAMQCADCAKSY---TTNTWRATVQIRQKVAHKRTFLYLEQLILKHNAHVDTVNIQE 350
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ +SHA K VEF+ V P +++ ++LVS+ S + + K+T S+E++ I
Sbjct: 351 TKDGLDFFYAQKSHAAKMVEFLTAVAPVKNKRSEELVSQDIHSGSSQYKFTFSIELAPIC 410
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
AH+LGN+ V+C+KV++ + +DP TL+ L+A QYWRSPF L +
Sbjct: 411 RDDLVVLPKKLAHSLGNITRLVLCSKVSSMLHFIDPSTLQTADLNAPQYWRSPFPTLLDA 470
Query: 234 RQLVEYIVLDVKVAS-------------------TENDTILSTRTHLGHLLILGDYAIGY 274
Q+VE+IVLDV+ ND R+HLG +L GD +GY
Sbjct: 471 TQMVEFIVLDVEPTGDIRGKNVLADVTVSRASDLGTNDQTYYIRSHLGAILHPGDSCMGY 530
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR-KHRKPNPPKLKPLEMEVDGSKCG 333
L N N + + P+ + +KK Y+ K+++ K+R ++ E+D +
Sbjct: 531 FLTNTNLNSDLWDTLDTDNTPEVVLVKKHYERKSKKSKYRNWKLKRMAKEYNEMDDATRQ 590
Query: 334 A--DREKVNNEY 343
A ++EK +Y
Sbjct: 591 ARQEQEKAERDY 602
>gi|240278569|gb|EER42075.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H143]
Length = 527
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/445 (28%), Positives = 196/445 (44%), Gaps = 114/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------------- 54
T+ CC CG I ++A +C C+K VDI++ +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTSAGALCEDCVKLTVDISQGIQREATLHCCRDCERWLQPPSQWISA 83
Query: 55 -----------------------------------PKIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+TVQ+E +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLSKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTILQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A VQ+ +LI KH+A
Sbjct: 144 EYVVASQQ--CPECAKSYTH---NTWRACVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+ G++FFFS R+HA K V+F+ V P + + ++L+S + K T SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKITYSVYLI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V SI+LLDP TL+ + + YWR+PFK +
Sbjct: 259 PICKDDLVALPISLAKSLGNIHPLTLCYRVGTSISLLDPSTLQTADIPSPIYWRTPFKNV 318
Query: 231 HTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYA 271
++LVE+IV+D++ A NDT TRTHLG +L +GD
Sbjct: 319 ADVQELVEFIVMDIEPAGRSVGHFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHVGDSV 378
Query: 272 IGYDLHEANQNDIELEN------YKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
GY L +N ND E Y S + PD + ++K Y K + K R ++ E
Sbjct: 379 KGYLLSGSNFNDTNYEALEQSSVYSSTI-PDVVLVRKHYPRKKKPK-RNWRLKRMNREEE 436
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E S +R++V ++E FLRD+
Sbjct: 437 EPVASSRKQERDRVEEDFEMFLRDV 461
>gi|225555940|gb|EEH04230.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus
G186AR]
Length = 527
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/445 (28%), Positives = 196/445 (44%), Gaps = 114/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------------- 54
T+ CC CG I ++A +C C+K VDI++ +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTSAGALCEDCVKLTVDISQGIQREATLHCCRDCERWLQPPSQWISA 83
Query: 55 -----------------------------------PKIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+TVQ+E +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLSKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTILQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A VQ+ +LI KH+A
Sbjct: 144 EYVVASQQ--CPECAKSYTH---NTWRACVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+ G++FFFS R+HA K V+F+ V P + + ++L+S + K T SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKITYSVYLI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V SI+LLDP TL+ + + YWR+PFK +
Sbjct: 259 PICKDDLVALPISLAKSLGNIHPLTLCYRVGTSISLLDPSTLQTADIPSPIYWRTPFKNV 318
Query: 231 HTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYA 271
++LVE+IV+D++ A NDT TRTHLG +L +GD
Sbjct: 319 ADVQELVEFIVMDIEPAGRSVGHFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHVGDSV 378
Query: 272 IGYDLHEANQNDIELEN------YKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
GY L +N ND E Y S + PD + ++K Y K + K R ++ E
Sbjct: 379 KGYLLSGSNFNDTNYEALEQSSVYSSTI-PDVVLVRKHYPRKKKPK-RNWRLKRMNREEE 436
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E S +R++V ++E FLRD+
Sbjct: 437 EPVASSRKQERDRVEEDFEMFLRDV 461
>gi|325090511|gb|EGC43821.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H88]
Length = 527
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/445 (28%), Positives = 196/445 (44%), Gaps = 114/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------------- 54
T+ CC CG I ++A +C C+K VDI++ +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTSAGALCEDCVKLTVDISQGIQREATLHCCRDCERWLQPPSQWISA 83
Query: 55 -----------------------------------PKIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+TVQ+E +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLSKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTILQQTFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A VQ+ +LI KH+A
Sbjct: 144 EYVVASQQ--CPECAKSYTH---NTWRACVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK+ G++FFFS R+HA K V+F+ V P + + ++L+S + K T SV +
Sbjct: 199 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKITYSVYLI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V SI+LLDP TL+ + + YWR+PFK +
Sbjct: 259 PICKDDLVALPISLAKSLGNIHPLTLCYRVGTSISLLDPSTLQTADIPSPIYWRTPFKNV 318
Query: 231 HTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYA 271
++LVE+IV+D++ A NDT TRTHLG +L +GD
Sbjct: 319 ADVQELVEFIVMDIEPAGRSVGHFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHVGDSV 378
Query: 272 IGYDLHEANQNDIELEN------YKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
GY L +N ND E Y S + PD + ++K Y K + K R ++ E
Sbjct: 379 KGYLLSGSNFNDTNYEALEQSSVYSSTI-PDVVLVRKHYPRKKKPK-RNWRLKRMNREEE 436
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E S +R++V ++E FLRD+
Sbjct: 437 EPVASSRKQERDRVEEDFEMFLRDV 461
>gi|403373763|gb|EJY86806.1| NMD protein affecting ribosome stability and mRNA decay [Oxytricha
trifallax]
Length = 660
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 131/457 (28%), Positives = 198/457 (43%), Gaps = 119/457 (26%)
Query: 6 GIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP---------- 55
IFA K V CC CGI M+ N SN C+ CLKS +D+TE + K N++ C
Sbjct: 55 SIFAAHK-VRCCMCGIMMLPNESNTCINCLKSSIDVTEGITKSINLSHCRECNRYLRPPW 113
Query: 56 ---------------------------------------KIKLKLTVQKEVLEGVIVEQS 76
++K+KLTVQKEVL G +++QS
Sbjct: 114 QSAELESPELLSLCLKNIKGLKRVKLIDAGFLYTEPHSRRLKVKLTVQKEVLNGTLLQQS 173
Query: 77 DVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARAT 120
VV + N+ C + + P W A Q+ +LI KH+A ++
Sbjct: 174 FVVEFVVNNLQCDDCKKTYT---PHTWIAQAQIRQRVTHKRTFLFLEQLIIKHNAAEKSL 230
Query: 121 KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI 180
IK+M G++F F RSHA + V+F+ VP + + KQLVS ++ KYT SVEI
Sbjct: 231 GIKEMHDGLDFQFKNRSHANRLVDFISGTVPTKVKTAKQLVSHDLRNNVFSFKYTFSVEI 290
Query: 181 SAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ I +L G +GP V+ K++ + ++D FT++ +D YW+ F A
Sbjct: 291 APICRDDLAVLSKPLSQLLGGIGPLVLVYKISTFVHIVDVFTMQTYEIDQAMYWKHEFSA 350
Query: 230 LHTSRQLVEYIVLDV------------------KVASTE---------NDTILSTRTHLG 262
L +L E++VL++ K+ E ND THLG
Sbjct: 351 LCGRDRLTEFVVLNIENTDFDVNISRAAAKQKFKMVQVEVARKSDFGNNDRTFIINTHLG 410
Query: 263 HLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
L D +G+DL E + E + P + ++K+Y RK +K KLK
Sbjct: 411 ETLNYNDTVLGFDL-EMINLNELEELELTKTLPSVVLVRKTYPRF--RKRQKHRLWKLKH 467
Query: 323 LEME------VDG---SKCGADREKVNNEYEEFLRDL 350
LE + + G K D+ K +Y+ FL+D+
Sbjct: 468 LEKQGLTDENIHGHKKKKEKTDQGKHQKDYDMFLQDI 504
>gi|71408415|ref|XP_806613.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70870409|gb|EAN84762.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 535
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 174/405 (42%), Gaps = 109/405 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC CG+ + SN SNMC +CL+S VDITESLQK I CP
Sbjct: 19 VLCCMCGLLIDSNPSNMCPSCLRSHVDITESLQKEYIIVYCPECTRYLQPPQYWSRADLE 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
++K+KL +QKEVL ++++Q+ VV
Sbjct: 79 SRELLTICLKRIKGMSRNVFKLVDANFIWTEPHSKRLKVKLVLQKEVLNNIVIQQACVVE 138
Query: 80 ----MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
+ TC + TG WDA VQ+ +LI KH +
Sbjct: 139 YVVLWQQCPTCQKVA-----TGQPQWDACVQVRQKTTHKKTFLFLEQLILKHKLHESFIR 193
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
++ G++FFF+ +SHA+ F+EF+ P R QLVS +K+ +T SVEI+
Sbjct: 194 VESKPDGLDFFFAHKSHAMNFLEFLNRNSPITRRDAVQLVSHDSKNNTAVQHHTFSVEIA 253
Query: 182 AISAHNL------------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ +L G LGP VI KV +SI LLDP TLR YW+ PF
Sbjct: 254 PLCREDLLLLPYQNYYLKLGGLGPLVIVHKVYSSIVLLDPKTLRAGEFTGQYYWKKPFPT 313
Query: 230 LHTSRQLVEYIVLDVKVASTENDTI--------LSTR----------THLGHLLILGDYA 271
+SR+L E+ VL+ N LS+ +HLG LL GD A
Sbjct: 314 FMSSRELTEFYVLECTPTGVTNGRYQLGVVTLCLSSEVGQGREWIVTSHLGGLLQPGDLA 373
Query: 272 IGYDLHEANQNDIELEN--YKSLVPPDTIKIKKSYKEKNQRKHRK 314
+GY L N N+ E ++ Y + ++K + + R+H++
Sbjct: 374 MGYLLEGKNFNNEEWDSQRYNPEQLQEVFLVRKHFPSQRARRHKR 418
>gi|154317304|ref|XP_001557972.1| 60S ribosomal export protein NMD3 [Botryotinia fuckeliana B05.10]
gi|347829645|emb|CCD45342.1| similar to nonsense-mediated mRNA decay protein 3 [Botryotinia
fuckeliana]
Length = 521
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 200/442 (45%), Gaps = 109/442 (24%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I ++A +C C+K VD+++ +Q+ A + C
Sbjct: 27 TILCCNCGAPIDGTTSAGALCYDCVKLTVDVSQGIQREATVHFCRDCERWLLPPQTWIQA 86
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+KLT+Q V EGV+++QS V
Sbjct: 87 SLESRELLALCLKKLRGLHKVRIIDASFIWTEPHSRRIKVKLTIQDSVSEGVVLQQSFEV 146
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ P ++ + W A VQ+ +LI KH A IK+
Sbjct: 147 --EYVVAYQQCPDCAKSYTANTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDTINIKE 204
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+ G++FFF+ R+ A KFV+F+ V P ++ ++L+S + K++ SVE+ I
Sbjct: 205 VKDGLDFFFAARNSAEKFVDFLNSVAPITAKKSQELISMDIHTSTKSYKFSFSVELVPIC 264
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+L GN+ P +C ++ NSI +LDP +L+ + YWR+PFK L
Sbjct: 265 KDDLVALPIKLAKAAGNISPLGLCYRIGNSINILDPQSLQTAEISCPIYWRAPFKPLADV 324
Query: 234 RQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHLLILGDYAIGY 274
++LVE+I++D++ VA ND TRTHLG+++ GD +GY
Sbjct: 325 QELVEFIIMDIEPLGPTKGRWALAEATVARASDLGSNDKTFYTRTHLGNVVHPGDSVMGY 384
Query: 275 DLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
+ N N+ + + NY S + PD + +KK Y K + K+R ++ E EV
Sbjct: 385 MMTGTNFNNPQYDALEESNNYASKI-PDVMLVKKLYARKKKSKNRNWRLKRMGKEEGEVL 443
Query: 329 GSKCGADREKVNNEYEEFLRDL 350
K D+EK++ +YE FL+D+
Sbjct: 444 PRK--QDQEKMDRDYEMFLQDV 463
>gi|72390854|ref|XP_845721.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62176159|gb|AAX70276.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70802257|gb|AAZ12162.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 542
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 173/405 (42%), Gaps = 109/405 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC CG+ + SN SNMC +CL+S VDITES+QK I CP
Sbjct: 19 VLCCVCGLLIDSNPSNMCSSCLRSHVDITESVQKEYIIVYCPECSRYLQPPQYWTRADLE 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
++K+KL +QKEV+ ++++Q+
Sbjct: 79 SRELLTICLKRVKGLSRNVFKLVDAKFIWTEPHSKRLKVKLVLQKEVMSNIVIQQACVIE 138
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV + TC + TG WDA VQL +LI KH +
Sbjct: 139 YVVVWQQCPTCQKVA-----TGQPQWDACVQLRQKVAHKKTFLYLEQLILKHKLQENFIR 193
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
++ G++FFF+ +SHA+ F+EFV P R QLVS +K+ +T S+EI+
Sbjct: 194 VEAQPDGLDFFFAHKSHALNFLEFVSRNSPVTRRDAVQLVSHDSKNNTAVQHHTFSLEIA 253
Query: 182 AISAHN------------LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ + LG LGP V+ KV +S+ L+DP TLR YW+ PF
Sbjct: 254 PLCREDLVLLPYQSYYLKLGGLGPLVLVHKVYSSVVLVDPRTLRANEFTGTYYWKKPFLP 313
Query: 230 LHTSRQLVEYIVLDVKVASTEND--------TILSTR----------THLGHLLILGDYA 271
L SR++ E+ VL N LS+ +HLG LL GD A
Sbjct: 314 LMNSREMTEFYVLQCTPTGVTNGRYHLGVITVCLSSEVGYGREWIVTSHLGGLLQPGDLA 373
Query: 272 IGYDLHEANQNDIELEN--YKSLVPPDTIKIKKSYKEKNQRKHRK 314
+GY L N E EN YK + + ++K + + R+HR+
Sbjct: 374 MGYLLEGRTFNHEEWENNKYKQDQLQEVVLVRKHFPAQRARRHRR 418
>gi|261329139|emb|CBH12118.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 542
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 173/405 (42%), Gaps = 109/405 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC CG+ + SN SNMC +CL+S VDITES+QK I CP
Sbjct: 19 VLCCVCGLLIDSNPSNMCSSCLRSHVDITESVQKEYIIVYCPECSRYLQPPQYWTRADLE 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
++K+KL +QKEV+ ++++Q+
Sbjct: 79 SRELLTICLKRVKGLSRNVFKLVDAKFIWTEPHSKRLKVKLVLQKEVMSNIVIQQACVIE 138
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV + TC + TG WDA VQL +LI KH +
Sbjct: 139 YVVVWQQCPTCQKVA-----TGQPQWDACVQLRQKVAHKKTFLYLEQLILKHKLQENFIR 193
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
++ G++FFF+ +SHA+ F+EFV P R QLVS +K+ +T S+EI+
Sbjct: 194 VEAQPDGLDFFFAHKSHALNFLEFVSRNSPVTRRDAVQLVSHDSKNNTAVQHHTFSLEIA 253
Query: 182 AISAHN------------LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ + LG LGP V+ KV +S+ L+DP TLR YW+ PF
Sbjct: 254 PLCREDLVLLPYQSYYLKLGGLGPLVLVHKVYSSVVLVDPRTLRANEFTGTYYWKKPFLP 313
Query: 230 LHTSRQLVEYIVLDVKVASTEND--------TILSTR----------THLGHLLILGDYA 271
L SR++ E+ VL N LS+ +HLG LL GD A
Sbjct: 314 LMNSREMTEFYVLQCTPTGVTNGRYHLGVVTVCLSSEVGYGREWIVTSHLGGLLQPGDLA 373
Query: 272 IGYDLHEANQNDIELEN--YKSLVPPDTIKIKKSYKEKNQRKHRK 314
+GY L N E EN YK + + ++K + + R+HR+
Sbjct: 374 MGYLLEGRTFNHEEWENNKYKQDQLQEVVLVRKHFPAQRARRHRR 418
>gi|156059292|ref|XP_001595569.1| 60S ribosomal export protein NMD3 [Sclerotinia sclerotiorum 1980
UF-70]
gi|154701445|gb|EDO01184.1| hypothetical protein SS1G_03658 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 521
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 200/442 (45%), Gaps = 109/442 (24%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I ++A +C C+K VD+++ +Q+ A + C
Sbjct: 27 TILCCNCGAPIDGTTSAGALCYDCVKLTVDVSQGIQREATVHFCRDCERWLLPPQTWIQA 86
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+KLT+Q V EGV+++QS V
Sbjct: 87 SLESRELLALCLKKLRGLHKVRIIDASFIWTEPHSRRIKVKLTIQDSVSEGVVLQQSFEV 146
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ P ++ + W A VQ+ +LI KH A IK+
Sbjct: 147 --EYVVAYQQCPDCAKSYTANTWRACVQVRQKVPHKRTFLYLEQLILKHGAHKDTINIKE 204
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+ G++FFF+ R+ A KFV+F+ V P ++ ++L+S + K++ SVE+ I
Sbjct: 205 VKDGLDFFFAARNSAEKFVDFLHSVAPVTAKKSQELISMDIHTSTKSYKFSFSVELVPIC 264
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+L GN+ P +C ++ NSI +LDP +L+ + YWR+PFK L
Sbjct: 265 KDDLVALPIKLAKSAGNISPLGLCYRIGNSINILDPQSLQTAEISCPIYWRAPFKPLADV 324
Query: 234 RQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHLLILGDYAIGY 274
++LVE+I++D++ VA ND TRTHLG+++ GD +GY
Sbjct: 325 QELVEFIIMDIEPLGPTKGRWALAEATVARASDLGSNDKTFYTRTHLGNVVHPGDSVMGY 384
Query: 275 DLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVD 328
+ N N+ + + NY S + PD + +KK Y K + K+R ++ E EV
Sbjct: 385 MMTGTNFNNPQYDALEESNNYASKI-PDVMLVKKLYARKKKSKNRNWRLKRMGKEEGEVL 443
Query: 329 GSKCGADREKVNNEYEEFLRDL 350
K D+EK++ +YE FL+D+
Sbjct: 444 PRK--QDQEKMDRDYEMFLQDV 463
>gi|340960081|gb|EGS21262.1| putative nonsense-mediated mRNA decay protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 824
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 132/511 (25%), Positives = 208/511 (40%), Gaps = 141/511 (27%)
Query: 1 MVQAAGIFAVRKTVSCCKCGITM--VSNASNMCVTCLKSEVDITESLQKHANITPCP--- 55
M G T+ CC CG+ + S+A +C C+KS VDI++ +Q+ + C
Sbjct: 315 MAPMMGTARTGATILCCNCGVPIDGTSSAGALCYDCIKSTVDISQGIQREGTLHFCRDCE 374
Query: 56 ------------------------------------------------KIKLKLTVQKEV 67
+IK+K+T+Q +V
Sbjct: 375 RWLMPPSTWVAAAPESRELLSLCLKRLRNLGRVRIIDARFVWTEPHSRRIKVKITIQDQV 434
Query: 68 LEGVIVEQSD--VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQ 111
+GV+++QS V + C + + W A VQ+ +LI
Sbjct: 435 SDGVLMQQSFEVVYVVAYQQCRECAKSYT---ANVWRAVVQVRQKVTHKRTFLLLEQLIL 491
Query: 112 KHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCK 171
KH A IK+ G++FFF+ R+ A FV F+ VVP + + L+S+ T + + +
Sbjct: 492 KHQAHKDTINIKEEKDGVDFFFAQRNQAEAFVHFLKSVVPITLKDSRHLISQDTHTGDKQ 551
Query: 172 CKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDAD 220
K+T S EI I A +GN+ P +C ++ ++ LLDP TL L +D
Sbjct: 552 YKFTYSAEIIPICRDDLVALPLKLAKQIGNIPPLCLCYRIGTAVYLLDPNTLHTAELSSD 611
Query: 221 QYWRSPFKALHTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHL 261
YWR PF+ L + +VE+IV+D++ ND + TRTHL
Sbjct: 612 VYWRQPFRPLADATSMVEFIVMDIEATGIRKGKWVLAEVTVARASDLGVNDNVYFTRTHL 671
Query: 262 GHLLILGDYAIGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKP 315
GHLL GD +GY L N N + Y S + PD + +KK Y + + + R
Sbjct: 672 GHLLHPGDSVMGYMLTGTNFNSDTFDAIENSRQYGSTI-PDVVLVKKHYPNRRRNRRRNW 730
Query: 316 NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL------------------------- 350
+L E E+ D+ ++++EYE FLRD+
Sbjct: 731 KLKRLPKDEGEL--LPKATDQARMDDEYEAFLRDVEEDEELRATLALYKNTRKTKKPQQD 788
Query: 351 -----MASVTDKEDVPSVPLDYLLADLDSSD 376
+A D +D P + +D LL D + D
Sbjct: 789 ADAMSIAETEDDDDGPKISMDELLDDFEDLD 819
>gi|225710644|gb|ACO11168.1| 60S ribosomal export protein NMD3 [Caligus rogercresseyi]
Length = 514
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 116/404 (28%), Positives = 184/404 (45%), Gaps = 112/404 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CGI + N +N CV CL+++VDITE + K + C
Sbjct: 14 ILCCQCGIPIDPNPANTCVGCLRTQVDITEDIPKQVVLNFCKFCERCLNPPSQWIACSLE 73
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--M 80
+IK+KL+VQ EV+ G I++Q+ VV +
Sbjct: 74 SRDLMALCLKRLKGLSKVKLVDANFVWTEPHSRRIKVKLSVQGEVISGAILQQTFVVEYV 133
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
N C + D W+A+VQ+ +++ K++A + IK +
Sbjct: 134 VHNQMCDDCR---RVEAKDTWNASVQVRQKTNQKKTLYYLEQVLIKYNATKDCSGIKVVH 190
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++FFFS S+A K VEF+G V+P + H K+L+S T S KYT SVE+S I
Sbjct: 191 EGLDFFFSSESNARKLVEFLGTVIPIRYHHAKKLISHDTNSNTYNYKYTFSVEVSPICKD 250
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
AH+LG +G + KV+N + L+D + + ++A Y+R+PF +L +
Sbjct: 251 NIVCLPSKLAHSLGGMGQIALAYKVSNILHLIDFNSCQFAEINATSYFRNPFLSLTGPKS 310
Query: 236 LVEYIVLDVK---------------------------VASTE----NDTILSTRTHLGHL 264
L E+ V++++ V S+E ND + RTHLG +
Sbjct: 311 LAEFTVMNIEIIPDLERRKFKGQGAISKKHVLADCWVVKSSELGRNNDEGVHCRTHLGRI 370
Query: 265 LILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKN 308
L +GD +G+DL +N N+ ELE PD + +KK Y +K+
Sbjct: 371 LQIGDSVMGFDLKNSNVNNPELEEISEHKIPDVVLVKKVYAQKS 414
>gi|326480255|gb|EGE04265.1| nonsense-mediated mRNA decay protein 3 [Trichophyton equinum CBS
127.97]
Length = 524
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 126/445 (28%), Positives = 200/445 (44%), Gaps = 113/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K +DI+E +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQPPAQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
++K+K+T+Q+E +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGTILQQAFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W ++VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CPECAKSYT---VNTWRSSVQVRQKVPHKRTFLYLEQLILKHGAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRG--TKSRNCKCKY----- 174
IK++ G++F+FS R+HA K V+F+ V P + + +QL+S T S++ K +
Sbjct: 199 IKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFSAELI 258
Query: 175 -TCSVEISAIS---AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
TC ++ A+ A +LGN+ P +C +V SI +LDP TL+ + A YWRSPF L
Sbjct: 259 PTCKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPAAIYWRSPFANL 318
Query: 231 HTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYA 271
++LVEY+V+D++ VA + NDT RTHLG +L GD
Sbjct: 319 ADIQELVEYVVMDIEAIGQSSGRYHLAEATVARSSDLGVNDTTYFARTHLGGILHPGDTV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N N+ E Y S + PD I +KK Y K + K R +L E
Sbjct: 379 MGYHLTGTNFNNANFEEIEASHTYGSTI-PDVILVKKHYPRKRKNKKRNWRLKRLDREEE 437
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
+ SK ++ ++ +++E FLRD+
Sbjct: 438 DERPSKKQSNNNRLEDDFEMFLRDV 462
>gi|440912375|gb|ELR61947.1| 60S ribosomal export protein NMD3 [Bos grunniens mutus]
Length = 503
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 135/492 (27%), Positives = 207/492 (42%), Gaps = 136/492 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ +LI K+ +IK++
Sbjct: 135 VVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T S+EI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSLEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT+ I L+DP TL+ +D + +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + KS PD + IKKSY +++ R KLK E+
Sbjct: 372 GDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRTRRQRRRN---WKLK--ELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 427 DRENTDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEG 380
L DL S G
Sbjct: 484 LEDLHISQDATG 495
>gi|242817480|ref|XP_002486964.1| 60S ribosomal export protein NMD3 [Talaromyces stipitatus ATCC
10500]
gi|218713429|gb|EED12853.1| nonsense-mediated mRNA decay protein 3 [Talaromyces stipitatus ATCC
10500]
Length = 523
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 124/441 (28%), Positives = 196/441 (44%), Gaps = 108/441 (24%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I +A +C C+K VDI++ +Q+ + + C
Sbjct: 23 TILCCNCGAPIDGTISAGALCHDCIKLTVDISQDVQRESALHFCRDCERWLQPPNTWVSA 82
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+K+T+Q+E +G I++Q+ V
Sbjct: 83 ALESRELLALCLRKLRGLSRVRIIDASFIWTEPHSRRIKVKITIQQEAFQGTILQQTFEV 142
Query: 80 MSRNITCVNLVPGFMQTGPDH-WDAAVQL--------------ELIQKHDAPARATKIKK 124
+ P ++ H W A VQ+ +L+ KH+A IK+
Sbjct: 143 --EYVVSTQQCPDCAKSFTHHSWRACVQVRQKVPHKRSFLYLEQLMLKHNAHRDTINIKE 200
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI- 183
G++FFFS R+HA K V+F+ VVP + + ++L+S + + K T SVE+ I
Sbjct: 201 AKDGLDFFFSQRNHAEKMVDFLSSVVPVRVKKSQELISMDIHTSVRQYKITYSVELIPIC 260
Query: 184 ----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +LGN+ P +C +V SI+LLDP TL+ + + YWR PFK L
Sbjct: 261 KDDLVALPMKMARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPSAIYWRQPFKNLADV 320
Query: 234 RQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYAIGY 274
++LVE++V+D++ VA ND TRTHLG +L +GD +GY
Sbjct: 321 QELVEFVVMDIEPVGESKGRFFLAEITVARASDMGVNDNSYFTRTHLGGVLHVGDSVLGY 380
Query: 275 DLHEANQND-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
L N ND I+ N + PD + ++K Y K + K R KLK + E +
Sbjct: 381 HLTGTNFNDPNFDAIQESNQYASTIPDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEE 437
Query: 330 SKCGADREKVNNEYEEFLRDL 350
D +++ ++E FLRD+
Sbjct: 438 PGRKQDADRLEADFEMFLRDI 458
>gi|307202686|gb|EFN81992.1| 60S ribosomal export protein NMD3 [Harpegnathos saltator]
Length = 503
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 124/448 (27%), Positives = 189/448 (42%), Gaps = 118/448 (26%)
Query: 11 RKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
+ + CC+CG + N +NMCV CL++ VDITE + K A + C
Sbjct: 13 KAIILCCECGTPIEPNPANMCVGCLRTHVDITEGIPKQATLHFCKGCERYLQPPVEWIHA 72
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
++K+KLTV E + GV+++Q VV
Sbjct: 73 PLESKELMSICLKKLKGLNRVKLVDASFVWTEPHSKRLKVKLTVHGEAIGGVVLQQVFVV 132
Query: 80 --MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
+ + C + D+W A+VQ+ +LI KH A + IK
Sbjct: 133 EYIVNHQMCDDC---HRAEAKDYWRASVQVRQKAINKKTFFYLEQLILKHKAHEQTLGIK 189
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++FF++ + A K V+F+ V+P + +H K+L+S S K+T SVEI +
Sbjct: 190 PIHEGLDFFYANEATARKMVDFLQTVIPCRYQHSKKLISHDIHSNIYNYKFTYSVEIVPV 249
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
S LG + P + K+TNS+ L+D + + + A YWR FK++
Sbjct: 250 SKDSVVCLPRKLTQQLGGITPICLVYKITNSVHLIDVSSGQIAEVSATVYWRHSFKSICN 309
Query: 233 SRQLVEYIVLDVKVASTE------------------------------NDTILSTRTHLG 262
+QL EYIV+D+++ E ND RTHLG
Sbjct: 310 PKQLTEYIVMDIELIKHEDKKIFPGQGSISNKHVIADVWLVKASELGINDNSTHARTHLG 369
Query: 263 HLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
H+L GD +GY L ++N ND + PD I +KK Y ++ R+ KLK
Sbjct: 370 HVLKPGDSVLGYTLKDSNINDANFDKLNGDTIPDIILVKKFYG-YDKAARRRARVWKLKH 428
Query: 323 LEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ EV NNEY EFL +L
Sbjct: 429 IADEV------VSMSTENNEYNEFLDEL 450
>gi|367046288|ref|XP_003653524.1| 60S ribosomal export protein NMD3 [Thielavia terrestris NRRL 8126]
gi|347000786|gb|AEO67188.1| hypothetical protein THITE_2116024 [Thielavia terrestris NRRL 8126]
Length = 522
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 127/455 (27%), Positives = 196/455 (43%), Gaps = 111/455 (24%)
Query: 1 MVQAAGIFAVRKTVSCCKCGITM--VSNASNMCVTCLKSEVDITESLQKHANITPCP--- 55
M AG T+ CC CG+ + ++A +C C+KS VDI++ + + + C
Sbjct: 12 MAPMAGTARTGATILCCNCGVPIDGTASAGALCYDCIKSTVDISQGIPREGTLHFCRDCD 71
Query: 56 ------------------------------------------------KIKLKLTVQKEV 67
+IK+K+T+Q V
Sbjct: 72 RWLMPPASWVAAAPESRELLSLCLKRLRNLGKVRIIDARFVWTEPHSRRIKVKITIQDSV 131
Query: 68 LEGVIVEQSD--VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQ 111
+GV+++QS V + C + + W A VQ+ +LI
Sbjct: 132 ADGVLMQQSFEVVYVVAYQQCRECAKSYTA---NVWRANVQVRQKVTHKRTFLLLEQLIL 188
Query: 112 KHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCK 171
KH A IK+ GI+FFF+ R+ A F+ F+ VVP + + L+S T + N +
Sbjct: 189 KHQAHRDTINIKEEKDGIDFFFAHRNQAEAFIHFLKSVVPVNVKDSRHLISADTHTGNKQ 248
Query: 172 CKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDAD 220
K+ S EI I A ++GN+ P V+C K+ S+ LLDP TL+ L +D
Sbjct: 249 YKFNYSAEIVPICRDDLVALPLKLAKSIGNISPLVLCYKIGTSVNLLDPNTLQTAELSSD 308
Query: 221 QYWRSPFKALHTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHL 261
YWR+PF+ L + ++VE+IV+D++ ND RTHL
Sbjct: 309 VYWRAPFQPLAGATEMVEFIVMDIEPTGQRRGKWVLGEATVARASDLGVNDNTYFARTHL 368
Query: 262 GHLLILGDYAIGYDLHEANQNDIEL---EN---YKSLVPPDTIKIKKSYKEKNQRKHRKP 315
GHLL GD +GY L N N L EN Y S + PD + +KK Y + + + R
Sbjct: 369 GHLLRAGDSVMGYMLTGTNFNSDALDAIENSRAYGSTI-PDVVLVKKHYPNRRKNRRRNW 427
Query: 316 NPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
++ E E+ + AD+ ++ EYE FLRD+
Sbjct: 428 KLKRMAKDEGEL--APKPADQARMEAEYEMFLRDV 460
>gi|365765264|gb|EHN06776.1| Nmd3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 534
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 210/500 (42%), Gaps = 139/500 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG + S MC C+K VDIT+ + + ANI+ C
Sbjct: 16 TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 76 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVE 135
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 136 YIVIAMQCPDCARSYT---TNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISE 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T + K++ SVEI I
Sbjct: 193 AKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPIC 252
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ FV+C+K++N++ +DP TL+ L YWR+PF AL
Sbjct: 253 KDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADV 312
Query: 234 RQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV VA T ND + R+HLG + GD +GY
Sbjct: 313 TQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGY 372
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N + PD + +KK Y QRK +K KLK + E +D S
Sbjct: 373 FIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMAKEHKDIDASL 428
Query: 332 CGADR------EKVNNEYEEFLRDLMASVTDKEDV------------------------- 360
R E+ +YE FL++L ++ V
Sbjct: 429 DYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDA 488
Query: 361 PSVPLDYLLADLDSSDKEEG 380
P + +D LL +LD E+G
Sbjct: 489 PQINIDELLDELDEMTLEDG 508
>gi|6321964|ref|NP_012040.1| Nmd3p [Saccharomyces cerevisiae S288c]
gi|308153577|sp|P38861.3|NMD3_YEAST RecName: Full=60S ribosomal export protein NMD3; AltName:
Full=Nonsense-mediated mRNA decay protein 3
gi|458900|gb|AAB68015.1| Nmd3p: Putative Upf1p interacting protein [Saccharomyces
cerevisiae]
gi|190405947|gb|EDV09214.1| factor required for a late assembly step of the 60S subunit
[Saccharomyces cerevisiae RM11-1a]
gi|207344532|gb|EDZ71647.1| YHR170Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146928|emb|CAY80184.1| Nmd3p [Saccharomyces cerevisiae EC1118]
gi|285810076|tpg|DAA06863.1| TPA: Nmd3p [Saccharomyces cerevisiae S288c]
gi|323348322|gb|EGA82571.1| Nmd3p [Saccharomyces cerevisiae Lalvin QA23]
gi|349578722|dbj|GAA23887.1| K7_Nmd3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298982|gb|EIW10077.1| Nmd3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 518
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 210/500 (42%), Gaps = 139/500 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG + S MC C+K VDIT+ + + ANI+ C
Sbjct: 16 TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 76 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVE 135
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 136 YIVIAMQCPDCARSYTT---NTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISE 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T + K++ SVEI I
Sbjct: 193 AKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPIC 252
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ FV+C+K++N++ +DP TL+ L YWR+PF AL
Sbjct: 253 KDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADV 312
Query: 234 RQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV VA T ND + R+HLG + GD +GY
Sbjct: 313 TQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGY 372
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N + PD + +KK Y QRK +K KLK + E +D S
Sbjct: 373 FIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMAKEHKDIDASL 428
Query: 332 CGADR------EKVNNEYEEFLRDLMASVTDKEDV------------------------- 360
R E+ +YE FL++L ++ V
Sbjct: 429 DYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDA 488
Query: 361 PSVPLDYLLADLDSSDKEEG 380
P + +D LL +LD E+G
Sbjct: 489 PQINIDELLDELDEMTLEDG 508
>gi|256273979|gb|EEU08897.1| Nmd3p [Saccharomyces cerevisiae JAY291]
Length = 518
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 210/500 (42%), Gaps = 139/500 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG + S MC C+K VDIT+ + + ANI+ C
Sbjct: 16 TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 76 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVE 135
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 136 YIVIAMQCPDCARSYTT---NTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISE 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T + K++ SVEI I
Sbjct: 193 AKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPIC 252
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ FV+C+K++N++ +DP TL+ L YWR+PF AL
Sbjct: 253 KDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADV 312
Query: 234 RQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV VA T ND + R+HLG + GD +GY
Sbjct: 313 TQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGY 372
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N + PD + +KK Y QRK +K KLK + E +D S
Sbjct: 373 FIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMAKEHKDIDASL 428
Query: 332 CGADR------EKVNNEYEEFLRDLMASVTDKEDV------------------------- 360
R E+ +YE FL++L ++ V
Sbjct: 429 DYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNCEANVPPEEHEMDEDEDEDA 488
Query: 361 PSVPLDYLLADLDSSDKEEG 380
P + +D LL +LD E+G
Sbjct: 489 PQINIDELLDELDEMTLEDG 508
>gi|950224|gb|AAA74491.1| Nmd3p [Saccharomyces cerevisiae]
Length = 518
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 210/500 (42%), Gaps = 139/500 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG + S MC C+K VDIT+ + + ANI+ C
Sbjct: 16 TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 76 LESRELLAICLRRLKGLTFVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVE 135
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 136 YIVIAMQCPDCARSYTT---NTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISE 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T + K++ SVEI I
Sbjct: 193 AKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPIC 252
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ FV+C+K++N++ +DP TL+ L YWR+PF AL
Sbjct: 253 KDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADV 312
Query: 234 RQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV VA T ND + R+HLG + GD +GY
Sbjct: 313 TQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGY 372
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N + PD + +KK Y QRK +K KLK + E +D S
Sbjct: 373 FIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMAKEHKDIDASL 428
Query: 332 CGADR------EKVNNEYEEFLRDLMASVTDKEDV------------------------- 360
R E+ +YE FL++L ++ V
Sbjct: 429 DYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDA 488
Query: 361 PSVPLDYLLADLDSSDKEEG 380
P + +D LL +LD E+G
Sbjct: 489 PQINIDELLDELDEMTLEDG 508
>gi|327300090|ref|XP_003234738.1| 60S ribosomal export protein NMD3 [Trichophyton rubrum CBS 118892]
gi|326463632|gb|EGD89085.1| nonsense-mediated mRNA decay protein [Trichophyton rubrum CBS
118892]
Length = 525
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 195/445 (43%), Gaps = 113/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K +DI+E +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQPPAQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
++K+K+T+Q+E +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGTILQQAFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A+VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CPECAKSYT---VNTWRASVQVRQKVPHKRTFLYLEQLILKHGAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ G++F+FS R+HA K V+F+ V P + + +QL+S + + K T S E+
Sbjct: 199 IKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFSAELI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V SI +LDP TL+ + + YWRSPF L
Sbjct: 259 PICKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPSAIYWRSPFANL 318
Query: 231 HTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYA 271
++LVEY+V+D++ VA + NDT RTHLG +L GD
Sbjct: 319 ADIQELVEYVVMDIEAIGQSSGRYHLAEATVARSSDLGVNDTTYFARTHLGGILHPGDTV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N N+ E Y S + PD I +KK Y K + K R +L E
Sbjct: 379 MGYHLTGTNFNNANFEEIEASHTYGSTI-PDVILVKKHYPRKRKNKKRNWRLKRLDREEE 437
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
+ SK + ++ +++E FLRD+
Sbjct: 438 DERPSKKQNNNNRLEDDFEMFLRDV 462
>gi|296816070|ref|XP_002848372.1| 60S ribosomal export protein NMD3 [Arthroderma otae CBS 113480]
gi|238841397|gb|EEQ31059.1| nonsense-mediated mRNA decay protein 3 [Arthroderma otae CBS
113480]
Length = 523
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/446 (28%), Positives = 198/446 (44%), Gaps = 116/446 (26%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K +DI+E +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQPPAQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
++++K+T+Q+E +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLRVKITIQQEAFQGTILQQAFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A+VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CPECAKSYTV---NTWRASVQVRQKVPHKRTFLYLEQLILKHGAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ G++F+FS R+HA K V+F+ V P + + +QL+S + + K T S E+
Sbjct: 199 IKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKITFSAELI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V SI LLDP TL+ + A YWRSPF L
Sbjct: 259 PICKDDLVALPIKLARSLGNISPLTLCYRVGTSINLLDPATLQTADIPAPIYWRSPFANL 318
Query: 231 HTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYA 271
++LVEY+V+D++ VA + NDT RTHLG +L GD
Sbjct: 319 ADIQELVEYVVMDIEAIGQTSGRYHLAEATVARSSDLGVNDTTYFARTHLGGVLHPGDTV 378
Query: 272 IGYDL-----HEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME 326
+GY L + AN +IE N PD I +KK Y K + K+R +LK L+ E
Sbjct: 379 MGYHLTGTNFNNANFEEIEASNTYGSTIPDVILVKKHYPRKKKNKNRN---WRLKRLDRE 435
Query: 327 VDGSKCGADRE--KVNNEYEEFLRDL 350
+ + + ++ +++E FLRD+
Sbjct: 436 EEDERPSKKQSHNRLEDDFELFLRDV 461
>gi|326436963|gb|EGD82533.1| CGI-07 protein [Salpingoeca sp. ATCC 50818]
Length = 463
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 192/425 (45%), Gaps = 108/425 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK-------- 56
+ CC+CG+ + N + MCV+C++S VDIT+ + K + C PK
Sbjct: 30 ILCCECGMQITPNPARMCVSCIRSRVDITDGIPKSVALFHCKGCGRYSNPPKGWLVAQLE 89
Query: 57 ----------------------------------IKLKLTVQKEVLEGVIVEQSDVV--M 80
+K++L +QKEVL VI++Q +V +
Sbjct: 90 SRELLSLCLRKLTGLSKVRLVDAGFIWTEPHSKRVKVRLVIQKEVLSDVILQQEFIVEFV 149
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
RN C + D W+A VQ+ ++I KH A A+ T+I +
Sbjct: 150 VRNEFCSDC---HRIEAKDTWNAVVQVRQKVPHKKTFYHLEQIIIKHKAHAKTTRISSVS 206
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++FFF A +FV F+ VVP +++ ++L+S+ S KYT SVEI +
Sbjct: 207 DGVDFFFGSSHDARRFVNFLESVVPIRTKTSQRLISQDFNSNTYNFKYTYSVEIIPVCKN 266
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
+H G++ P +CT+V + +DPFTL+ ++ +W+ PF A+ +
Sbjct: 267 DIVCMSPQVSHREGHISPVCLCTQVGTVLHFIDPFTLQIAHVRNALFWQHPFNAIASHGS 326
Query: 236 LVEYIVLDVK----------------------VASTENDTI---LSTRTHLGHLLILGDY 270
L+E+IV+DV+ V + E +T TR+HLGH+L GD
Sbjct: 327 LIEFIVMDVEPVYDEHHNEVTNGKFLLVNVVVVRANELETGGQEFQTRSHLGHILRYGDT 386
Query: 271 AIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGS 330
+G+D AN ND + PD I ++KS+ E+ +R+ + KLK L E DG+
Sbjct: 387 VLGFDFTTANVNDEYFNRLDTSNFPDVILVRKSHAERRKRR--RGRNFKLKYLAKEEDGA 444
Query: 331 KCGAD 335
G +
Sbjct: 445 GDGWN 449
>gi|146414748|ref|XP_001483344.1| histone acetyltransferase GCN5 [Meyerozyma guilliermondii ATCC
6260]
Length = 658
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/432 (27%), Positives = 195/432 (45%), Gaps = 104/432 (24%)
Query: 13 TVSCCKCGITMVS-NASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M + MC C+K VDITE + + AN++ C
Sbjct: 174 TVLCCNCGVPMDGLSGLVMCHDCIKLTVDITEGIPREANLSFCRNCERFLQPPTQWIRCA 233
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 234 LESRELLALCLRKLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIIQQTFEVE 293
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I++
Sbjct: 294 YVVVAMQCADCAKSY---TTNTWRATVQIRQKVAHKRTFLYLEQLILKHNAHVDTVNIQE 350
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ +SHA K VEF+ V P +++ ++LVS+ S + + K+T S+E++ I
Sbjct: 351 TKDGLDFFYAQKSHAAKMVEFLTAVAPVKNKRSEELVSQDIHSGSSQYKFTFSIELAPIC 410
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
AH+LGN+ V+C+KV++ + +DP TL+ L+A QYWRSPF L +
Sbjct: 411 RDDLVVLPKKLAHSLGNITRLVLCSKVSSMLHFIDPSTLQTADLNAPQYWRSPFPTLLDA 470
Query: 234 RQLVEYIVLDVKVAS-------------------TENDTILSTRTHLGHLLILGDYAIGY 274
Q+VE+IVLDV+ ND R+HLG +L GD +GY
Sbjct: 471 TQMVEFIVLDVEPTGDIRGKNVLADVTVSRASDLGTNDQTYYIRSHLGAILHPGDSCMGY 530
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR-KHRKPNPPKLKPLEMEVDGSKCG 333
L N N + + P+ + +KK Y+ K+++ K+R ++ E+D +
Sbjct: 531 FLTNTNLNSDLWDTLDTDNTPEVVLVKKHYERKSKKSKYRNWKLKRMAKEYNEMDDATRQ 590
Query: 334 A--DREKVNNEY 343
A ++EK +Y
Sbjct: 591 ARQEQEKAERDY 602
>gi|302497129|ref|XP_003010565.1| hypothetical protein ARB_03266 [Arthroderma benhamiae CBS 112371]
gi|291174108|gb|EFE29925.1| hypothetical protein ARB_03266 [Arthroderma benhamiae CBS 112371]
Length = 544
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/451 (27%), Positives = 197/451 (43%), Gaps = 113/451 (25%)
Query: 7 IFAVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------- 55
I A + CC CG I + A +C C+K +DI+E +Q+ A + C
Sbjct: 38 IRAFFYRILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQPP 97
Query: 56 ------------------------------------------KIKLKLTVQKEVLEGVIV 73
++K+K+T+Q+E +G I+
Sbjct: 98 AQWISAALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGTIL 157
Query: 74 EQS----DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDA 115
+Q+ VV S+ C + + W A+VQ+ +LI KH A
Sbjct: 158 QQAFEVEYVVASQQ--CPECAKSYTV---NTWRASVQVRQKVPHKRTFLYLEQLILKHGA 212
Query: 116 PARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT 175
IK++ G++F+FS R+HA K V+F+ V P + + +QL+S + + K T
Sbjct: 213 HKDTINIKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVKKSQQLISMDVHTSSKSYKIT 272
Query: 176 CSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR 224
S E+ I A +LGN+ P +C +V SI +LDP TL+ + + YWR
Sbjct: 273 FSAELIPICKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPSAIYWR 332
Query: 225 SPFKALHTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLL 265
SPF L ++LVEY+V+D++ VA + NDT RTHLG +L
Sbjct: 333 SPFANLADIQELVEYVVMDIEAIGQSSGRYHLAEATVARSSDLGVNDTTYFARTHLGGIL 392
Query: 266 ILGDYAIGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
GD +GY L N N+ E Y S + PD I +KK Y K + K R +
Sbjct: 393 HPGDTVMGYHLTGTNFNNANFEEIEASHTYGSTI-PDVILVKKHYPRKRKNKKRNWRLKR 451
Query: 320 LKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
L E + SK ++ ++ +++E FLRD+
Sbjct: 452 LDREEEDERPSKKQSNNNRLEDDFEMFLRDV 482
>gi|302663502|ref|XP_003023393.1| hypothetical protein TRV_02495 [Trichophyton verrucosum HKI 0517]
gi|291187387|gb|EFE42775.1| hypothetical protein TRV_02495 [Trichophyton verrucosum HKI 0517]
Length = 525
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 125/445 (28%), Positives = 194/445 (43%), Gaps = 113/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + A +C C+K +DI+E +Q+ A + C
Sbjct: 24 TILCCNCGAPIDGTTAAGALCEDCVKLTIDISEGVQREATLHCCKDCERWLQPPAQWISA 83
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
++K+K+T+Q+E +G I++Q+
Sbjct: 84 ALESRELLALCLRKLRGLAKVRIIDAGFIWTEPHSKRLKVKITIQQEAFQGTILQQAFEV 143
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A+VQ+ +LI KH A
Sbjct: 144 EYVVASQQ--CPECAKSYT---VNTWRASVQVRQKVPHKRTFLYLEQLILKHGAHKDTIN 198
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ G++F+FS R+HA K V+F+ V P + R +QL+S + + K T S E+
Sbjct: 199 IKEVKDGLDFYFSARNHAEKMVDFLASVAPIRVRKSQQLISMDVHTSSKSYKITFSAELI 258
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
I A +LGN+ P +C +V SI +LDP TL+ + + YWRSPF L
Sbjct: 259 PICKDDLVALPIKLARSLGNISPLTLCYRVGTSINVLDPATLQTADIPSAIYWRSPFANL 318
Query: 231 HTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLILGDYA 271
++LVEY+V+D++ VA + NDT RTHLG +L GD
Sbjct: 319 ADIQELVEYVVMDIEAIGQSSGRYHLAEATVARSSDLGVNDTTYFARTHLGGILHPGDTV 378
Query: 272 IGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
+GY L N N+ E Y S + PD I +KK Y K + K R +L E
Sbjct: 379 MGYHLTGTNFNNANFEEIEASHTYGSTI-PDVILVKKHYPRKRKNKKRNWRLKRLDREEE 437
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
+ SK + ++ +++E F RD+
Sbjct: 438 DERPSKKQNNNNRLEDDFEMFSRDV 462
>gi|401625385|gb|EJS43395.1| nmd3p [Saccharomyces arboricola H-6]
Length = 518
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 124/445 (27%), Positives = 196/445 (44%), Gaps = 114/445 (25%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG + S MC C+K VDIT+ + + ANI+ C
Sbjct: 16 TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 76 LESRELLAICLRRLKGLTKVRLIDASFIWTEPHSRRIRVKLTVQGEAMTNTIIQQTFEVE 135
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 136 YIVIAMQCPDCARSYT---TNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISE 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T + K++ SVEI I
Sbjct: 193 SRDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPIC 252
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ FV+C+K++N++ +DP TL+ L YWR PF +L
Sbjct: 253 KDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRVPFGSLADV 312
Query: 234 RQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV +A T ND + TR+HLG + GD +GY
Sbjct: 313 SQLVEFIVLDVDSTGISKGNRVLADITIARTSDLGVNDQVYYTRSHLGGICHAGDSVMGY 372
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N + PD + +KK Y QRK +K KLK + E +D S
Sbjct: 373 FIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMAKEHKDIDASV 428
Query: 332 CGADR------EKVNNEYEEFLRDL 350
+ R E+ +YE FL++L
Sbjct: 429 DYSSRVQKQEMERAEKDYELFLQEL 453
>gi|154276128|ref|XP_001538909.1| 60S ribosomal export protein NMD3 [Ajellomyces capsulatus NAm1]
gi|150413982|gb|EDN09347.1| nonsense-mediated mRNA decay protein 3 [Ajellomyces capsulatus
NAm1]
Length = 519
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/445 (28%), Positives = 200/445 (44%), Gaps = 114/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I ++A +C C+K VDI++ +Q+ A + C
Sbjct: 16 TILCCNCGAPIDGTTSAGALCEDCVKLTVDISQGIQREATLHCCKDCERWLQPPSQWISA 75
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS--- 76
+IK+K+TVQ+E +G I++Q+
Sbjct: 76 ALESRELLALCLRKLRGLSKVRIIDAGFIWTEPHSKRIKVKITVQQEAFQGTILQQTFEV 135
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV S+ C + + W A VQ+ +LI KH+A
Sbjct: 136 EYVVASQQ--CPECAKSYTH---NTWRACVQVRQKVPHKRTFLYLEQLILKHNAHKDTIN 190
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRG--TKSRNCKCKYT---- 175
IK+ G++FFFS R+HA K V+F+ V P + + ++L+S T +++ K Y+
Sbjct: 191 IKEAKDGLDFFFSQRNHAEKMVDFLSSVAPTRVKKSQELISMDVHTSTKSYKITYSVYLI 250
Query: 176 --CSVEISAIS---AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
C ++ A+ A +L N+ P +C +V SI+LLDP TL+ + + YWR+PFK +
Sbjct: 251 PICKDDLVALPISLAKSLSNIHPLTLCYRVGTSISLLDPSTLQTADIPSPIYWRTPFKNV 310
Query: 231 HTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYA 271
++LVE+IV+D++ A NDT TRTHLG +L +GD
Sbjct: 311 ADVQELVEFIVMDIEPAGRSVGHFHLAEVTVARASDLGVNDTTYFTRTHLGGVLHVGDSV 370
Query: 272 IGYDLHEANQNDIELEN------YKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
GY L +N ND E Y S + PD + ++K Y K + K R ++ E
Sbjct: 371 KGYLLSGSNFNDTNYEALEQSSVYSSTI-PDVVLVRKHYPRKKKPK-RNWRLKRMNREEE 428
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E S +R++V ++E FLRD+
Sbjct: 429 EPVASSRKQERDRVEEDFEMFLRDV 453
>gi|119482227|ref|XP_001261142.1| 60S ribosomal export protein NMD3 [Neosartorya fischeri NRRL 181]
gi|119409296|gb|EAW19245.1| nonsense-mediated mRNA decay protein 3 [Neosartorya fischeri NRRL
181]
Length = 532
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 124/460 (26%), Positives = 200/460 (43%), Gaps = 117/460 (25%)
Query: 4 AAGIFAVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
AA A+ T+ CC CG I ++A +C C++ VDI++ + + + C
Sbjct: 12 AAPQEAISATILCCNCGAPIDGTTSAGALCQDCVRLTVDISQGIPREGVLHFCRDCERWL 71
Query: 56 ---------------------------------------------KIKLKLTVQKEVLEG 70
+IK+K+T+Q+E +G
Sbjct: 72 QPPSAWVSAALESKELLALCLRKLRGLNKVRIIDASFIWTEPHSRRIKVKITIQQEAFQG 131
Query: 71 VIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHD 114
IV+Q+ V + C + + + W A+VQ+ +LI KH+
Sbjct: 132 TIVQQAFEVEYVVHAQQCPDCAKSYTH---NTWRASVQVRQKVPHKRTFLYLEQLILKHN 188
Query: 115 APARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKY 174
A IK+ G++FFF+ R+HA K V+F+ V P + + ++L+S + K+
Sbjct: 189 AHQDTVNIKEAKDGLDFFFAQRNHAEKMVDFLSSVTPIKVKKSQELISMDIHTSTKSYKF 248
Query: 175 TCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW 223
T SVE+ I A +LGN+ P +C +V+ S+ L+DP TL+ + YW
Sbjct: 249 TFSVELVPICKDDLVALPIKLARSLGNISPLALCHRVSTSVNLIDPNTLQTAEVPTAVYW 308
Query: 224 RSPFKALHTSRQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHL 264
R+PFK L +LVE+I++D++ VA N+ TRTHLG +
Sbjct: 309 RAPFKNLADVNELVEFIIMDIEPVGRSNGRFHLAEATVARASDLGSNNQTYFTRTHLGGI 368
Query: 265 LILGDYAIGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPP 318
L +GD +GY L AN ND E Y S + PD + +KK Y K +K R
Sbjct: 369 LHVGDSVLGYHLTGANFNDPNFEAIEASSQYGSTI-PDVVLVKKHYARKKNKKTRNWRLK 427
Query: 319 KLKPLEMEVDGSKCGA--------DREKVNNEYEEFLRDL 350
++ E + GA +RE++ ++E FLRD+
Sbjct: 428 RMAREYEEEALQQQGASISRKQEQERERMEADFEMFLRDV 467
>gi|159130065|gb|EDP55179.1| nonsense-mediated mRNA decay protein 3 [Aspergillus fumigatus
A1163]
Length = 532
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 124/459 (27%), Positives = 199/459 (43%), Gaps = 115/459 (25%)
Query: 4 AAGIFAVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
AA AV T+ CC CG I ++A +C C++ VDI++ + + + C
Sbjct: 12 AAPQEAVSATILCCNCGAPIDGTTSAGALCQDCVRLTVDISQGIPREGVLHFCRDCERWL 71
Query: 56 ---------------------------------------------KIKLKLTVQKEVLEG 70
+IK+K+T+Q+E +G
Sbjct: 72 QPPSGWVSAALESKELLALCLRKLRGLNKVRIIDASFIWTEPHSRRIKVKITIQQEAFQG 131
Query: 71 VIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHD 114
IV+Q+ V + C + + + W A+VQ+ +LI KH+
Sbjct: 132 TIVQQAFEVEYVVHTQQCPDCAKSYTH---NTWRASVQVRQKVPHKRTFLYLEQLILKHN 188
Query: 115 APARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKY 174
A IK+ G++FFF+ R+HA K V+F+ V P + + ++L+S + K+
Sbjct: 189 AHQDTVNIKEAKDGLDFFFAQRNHAEKMVDFLSSVAPIKVKKSQELISMDIHTSTKSYKF 248
Query: 175 TCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW 223
T SVE+ I A +LGN+ P +C +V+ S+ L+DP TL+ + YW
Sbjct: 249 TFSVELVPICKDDLVALPIKLARSLGNISPLALCHRVSTSVNLIDPNTLQTAEVPTAVYW 308
Query: 224 RSPFKALHTSRQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHL 264
R+PFK L +LVE+I++D++ VA N+ TRTHLG +
Sbjct: 309 RAPFKNLADVTELVEFIIMDIEPVGRSNGRFHLAEATVARASDLGSNNQTYFTRTHLGGI 368
Query: 265 LILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
L +GD +GY L N ND IE + S PD + +KK Y K +K R +
Sbjct: 369 LHVGDSVLGYHLTGTNFNDPNFEAIEASSQYSSTIPDVVLVKKHYARKKNKKTRNWRLKR 428
Query: 320 LKPLEMEVDGSKCGA--------DREKVNNEYEEFLRDL 350
+ E + GA +RE++ ++E FLRD+
Sbjct: 429 MAREYEEEALQQQGASISRKQEQERERMEADFEMFLRDV 467
>gi|71002662|ref|XP_756012.1| nonsense-mediated mRNA decay protein 3 [Aspergillus fumigatus
Af293]
gi|66853650|gb|EAL93974.1| nonsense-mediated mRNA decay protein 3 [Aspergillus fumigatus
Af293]
Length = 532
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 124/459 (27%), Positives = 199/459 (43%), Gaps = 115/459 (25%)
Query: 4 AAGIFAVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------ 55
AA AV T+ CC CG I ++A +C C++ VDI++ + + + C
Sbjct: 12 AAPQEAVSATILCCNCGAPIDGTTSAGALCQDCVRLTVDISQGIPREGVLHFCRDCERWL 71
Query: 56 ---------------------------------------------KIKLKLTVQKEVLEG 70
+IK+K+T+Q+E +G
Sbjct: 72 QPPSGWVSAALESKELLALCLRKLRGLNKVRIIDASFIWTEPHSRRIKVKITIQQEAFQG 131
Query: 71 VIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHD 114
IV+Q+ V + C + + + W A+VQ+ +LI KH+
Sbjct: 132 TIVQQAFEVEYVVHTQQCPDCAKSYTH---NTWRASVQVRQKVPHKRTFLYLEQLILKHN 188
Query: 115 APARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKY 174
A IK+ G++FFF+ R+HA K V+F+ V P + + ++L+S + K+
Sbjct: 189 AHQDTVNIKEAKDGLDFFFAQRNHAEKMVDFLSSVAPIKVKKSQELISMDIHTSTKSYKF 248
Query: 175 TCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW 223
T SVE+ I A +LGN+ P +C +V+ S+ L+DP TL+ + YW
Sbjct: 249 TFSVELVPICKDDLVALPIKLARSLGNISPLALCHRVSTSVNLIDPNTLQTAEVPTAVYW 308
Query: 224 RSPFKALHTSRQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHL 264
R+PFK L +LVE+I++D++ VA N+ TRTHLG +
Sbjct: 309 RAPFKNLADVTELVEFIIMDIEPVGRSNGRFHLAEATVARASDLGSNNQTYFTRTHLGGI 368
Query: 265 LILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
L +GD +GY L N ND IE + S PD + +KK Y K +K R +
Sbjct: 369 LHVGDSVLGYHLTGTNFNDPNFEAIEASSQYSSTIPDVVLVKKHYARKKNKKTRNWRLKR 428
Query: 320 LKPLEMEVDGSKCGA--------DREKVNNEYEEFLRDL 350
+ E + GA +RE++ ++E FLRD+
Sbjct: 429 MAREYEEEALQQQGASISRKQEQERERMEADFEMFLRDV 467
>gi|348581748|ref|XP_003476639.1| PREDICTED: 60S ribosomal export protein NMD3-like [Cavia porcellus]
Length = 465
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 177/406 (43%), Gaps = 109/406 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CGI + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGIPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A VQ+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGVHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTFNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWNHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDLKRNAGAGVISKKHTLGEIWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHR 313
GD +G+DL N ND + S PD + IKKSY +++ R
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDKVPDVVLIKKSYDRTKRQRRR 417
>gi|147901478|ref|NP_001085853.1| 60S ribosomal export protein NMD3 [Xenopus laevis]
gi|82184282|sp|Q6GNS3.1|NMD3_XENLA RecName: Full=60S ribosomal export protein NMD3
gi|49115525|gb|AAH73430.1| MGC80914 protein [Xenopus laevis]
Length = 504
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 134/495 (27%), Positives = 211/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CGI + N +NMCV CL+++VDI+E + K ++ C
Sbjct: 15 ILCCQCGIPIPPNPANMCVACLRTQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ + I KH ++K++
Sbjct: 135 VVQAQMCDDC---HRVEAKDFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F+++ + H K VEF+ VP + + ++L+S + K T SVEI +
Sbjct: 192 HDGLDFYYASKQHGQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ IC +VT++I L+DP TL+ +D + YWR PF +L +
Sbjct: 252 DNLVCLSPKLAQSLGNMNQICICARVTSTIHLIDPSTLQIAEVDGNTYWRYPFNSLFHPK 311
Query: 235 QLVEYIVLDVKV----------ASTENDTILS-----------------TRTHLGHLLIL 267
Q+ E+IV+D ++ N +L+ RTHLGHLL
Sbjct: 312 QMEEFIVMDTEIIRDRKQAAGAGMRSNKHVLAEVWVQKTSEMNTTQQYHCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + PD + IKKSY +++ R KLK EM+
Sbjct: 372 GDLVLGFDLSNCNLNDEFINKMNPHHIPDVVLIKKSYDRARRQRRRN---WKLK--EMDR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD+E P + L +
Sbjct: 427 DREGMDTDDER---QYQDFLEDLEEDELLRKNVNIFKNANVPVESDTDEEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|156844183|ref|XP_001645155.1| hypothetical protein Kpol_1062p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156115813|gb|EDO17297.1| hypothetical protein Kpol_1062p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 522
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 138/506 (27%), Positives = 216/506 (42%), Gaps = 139/506 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG + S MC C+K VDITE + + AN++ C
Sbjct: 22 TVLCCNCGAPIDGSTGLVMCYDCIKMTVDITEGIPREANVSFCRNCERFLQPPGQWIRAE 81
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 82 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMVNTIIQQTFEVE 141
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 142 YIVIAMQCADCARSYT---TNTWRATVQIRQKVPHKRTFLYLEQLILKHNAHVDTISITE 198
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP +++ ++L+S+ S + K++ S+EI I
Sbjct: 199 AKDGLDFFYAQKNHAVKMLDFLNSVVPIKAKKSEELISQDVHSGSATYKFSYSIEIVPIC 258
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +L N+ FV+CTKV+N++ +DP TL+ L A YWR+ F+ L
Sbjct: 259 RDDLVVLPKKLAKSLSNISQFVLCTKVSNTLQFMDPTTLQTVDLSAPVYWRNSFQPLADV 318
Query: 234 RQLVEYIVLDVK----------------VASTE---NDTILSTRTHLGHLLILGDYAIGY 274
QLVE++VLDV+ ST+ ND R+HLG L GD +GY
Sbjct: 319 SQLVEFMVLDVEPVGISKGKHVLADITVARSTDLGVNDQTYYVRSHLGALCHSGDTVMGY 378
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N ++ PD + +KK Y QRK RK KLK + E +D S+
Sbjct: 379 FVANSNYNSDLFDDLNIDHVPDVVIVKKLY----QRKSRKNRNWKLKRMAKEHKDIDASQ 434
Query: 332 CGA------DREKVNNEYEEFLRDLMASVT------------------------DKEDVP 361
+ D E+ +YE FL++L + ED P
Sbjct: 435 DYSSKSQKQDIERAERDYELFLQELEEDQELRQTVNLYKSSNPENIEEHGMEEDEDEDAP 494
Query: 362 SVPLDYLLADLDS-SDKEEGDDSMIE 386
+ +D LL +LD + + G D M E
Sbjct: 495 QIDIDELLDELDEMTLDDNGADEMGE 520
>gi|340727431|ref|XP_003402047.1| PREDICTED: 60S ribosomal export protein NMD3-like [Bombus
terrestris]
Length = 503
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 128/446 (28%), Positives = 188/446 (42%), Gaps = 120/446 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CGI + N +NMCV CL+++VD+TE++ K A I C
Sbjct: 14 ILCCICGIGIEPNPANMCVACLRTQVDVTENIPKQATIYFCKGCERYLQPPAEWIHAALE 73
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-MS 81
++K+KLTVQ EV+ G +++Q +V +
Sbjct: 74 SRELLTLCLKKLKGLNRVKLIDAGFVWTEPHSMRLKVKLTVQAEVMGGTVLQQVFIVEYT 133
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
N N D+W A VQ+ +LI K+ A + IK +
Sbjct: 134 VNHQMCN--DCHRTEAKDYWRALVQVRQRATNKKTFYYLEQLILKYKAHEQTLGIKPIHE 191
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++FF++ + A K V+F+ V+P + H K+L+S S K T SVEI IS
Sbjct: 192 GLDFFYANEASARKMVDFLSSVIPCRYDHSKKLISHDIHSNIYNYKITYSVEIVPISRDS 251
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
+H LG + + K+TN + L+D T + L A YWR F ++ +QL
Sbjct: 252 IVCLPRKLSHQLGGINSICLVYKITNFVHLIDVSTGQIAELSATLYWRHTFNSICDPKQL 311
Query: 237 VEYIVLDVK--------------------------------VASTENDTILSTRTHLGHL 264
+EY V+D++ + TEN ++ TRTHLGH+
Sbjct: 312 IEYTVMDIEQIKFKDRKFFPGQGTISNKHVIADVWVVRSCDLGLTEN--LIHTRTHLGHI 369
Query: 265 LILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE 324
L GD +GY L+E+N ND E V PD I KK+Y Q + + K
Sbjct: 370 LKPGDTVLGYALNESNINDENFEMLNKDVVPDVILTKKNY---TQDRAARRRMRDWKLKH 426
Query: 325 MEVDGSKCGADREKVNNEYEEFLRDL 350
M D D NN+Y EFL DL
Sbjct: 427 MIQDKDNMVTD----NNDYYEFLEDL 448
>gi|350422983|ref|XP_003493349.1| PREDICTED: 60S ribosomal export protein NMD3-like [Bombus
impatiens]
Length = 503
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 127/446 (28%), Positives = 188/446 (42%), Gaps = 120/446 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CGI + N +NMCV CL+++VD+TE++ K A I C
Sbjct: 14 ILCCICGIGIEPNPANMCVACLRTQVDVTENIPKQATIYFCKGCERYLQPPAEWIHAALE 73
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-MS 81
++K+KLTVQ EV+ G +++Q VV +
Sbjct: 74 SRELLTLCLKKLKGLNRVKLIDAGFVWTEPHSMRLKVKLTVQAEVMGGTVLQQVFVVEYT 133
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
N N D+W A VQ+ +LI K+ A + IK +
Sbjct: 134 VNHQMCN--DCHRTEAKDYWRALVQVRQRATNKKTFYYLEQLILKYRAHEQTLGIKPIHE 191
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++FF++ + A K V+F+ ++P + H K+L+S S K T SVEI IS
Sbjct: 192 GLDFFYANEASARKMVDFLSSIIPCRYDHSKKLISHDIHSNIYNYKVTYSVEIVPISRDS 251
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
+H LG + + K+TN + L+D T + L A YWR F ++ +QL
Sbjct: 252 IVCLPRKLSHQLGGINSICLVYKITNFVHLIDVSTGQIAELSATLYWRHTFNSICDPKQL 311
Query: 237 VEYIVLDVK--------------------------------VASTENDTILSTRTHLGHL 264
+EY V+D++ + TEN ++ TRTHLGH+
Sbjct: 312 IEYTVMDIEQIKFKDRKFFPGQGTISNKHVIADVWVVRSCDLGLTEN--LIHTRTHLGHI 369
Query: 265 LILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE 324
L GD +GY L+++N ND E V PD I KK+Y Q + + K
Sbjct: 370 LKPGDTVLGYALNDSNINDENFEMLNKDVVPDVILTKKNY---TQDRAARRRMRDWKLKH 426
Query: 325 MEVDGSKCGADREKVNNEYEEFLRDL 350
M D D NN+Y EFL DL
Sbjct: 427 MIQDKDNMATD----NNDYYEFLEDL 448
>gi|254580335|ref|XP_002496153.1| 60S ribosomal export protein NMD3 [Zygosaccharomyces rouxii CBS
732]
gi|238939044|emb|CAR27220.1| ZYRO0C11704p [Zygosaccharomyces rouxii]
Length = 512
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 118/441 (26%), Positives = 196/441 (44%), Gaps = 106/441 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ + S+ MC C+K VDIT+ + + ++++ C
Sbjct: 17 TVLCCNCGVPIDGSSGLVMCYDCIKMNVDITDGIPRESHLSFCRNCERFLQPPGQWVKAQ 76
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVM 80
+I++K+TVQ E + I++QS V
Sbjct: 77 LESRELLAICLRRLKGLTKIRLVDASFIWTEPHSRRIRIKVTVQGEAMMNTIIQQSFEV- 135
Query: 81 SRNITCVNLVPGFMQTGPDH-WDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ P ++ H W AAVQ+ +LI KH+A I++
Sbjct: 136 -EFVVIAMQCPDCAKSYTAHTWRAAVQIRQKVPHKRTFLFLEQLILKHNAHVDTVSIREA 194
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F+++ R+HA+K ++F+ V+P + + ++L+S+ +S K+T SVEI I
Sbjct: 195 KDGLDFYYAQRNHAMKMIDFLNSVIPIRYKKSEELISQDIQSSTSTYKFTFSVEIVPICR 254
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
+ +LGN+ FV+C++V +SI +DP TL+ + A YWR PF +L +
Sbjct: 255 DDLVVLPKKLSKSLGNISQFVLCSRVNSSIQFMDPRTLQTADISASVYWRQPFNSLADAG 314
Query: 235 QLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHLLILGDYAIGYD 275
QLVE+IVLDV+ VA ND R+HLG + GD +GY
Sbjct: 315 QLVEFIVLDVEPTGESRGRFVLADITVAKASDLGSNDQEYYVRSHLGAICHAGDSVMGYH 374
Query: 276 LHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGAD 335
+ AN N + PD + +KK Y+ +R +R ++ ++D S +
Sbjct: 375 IGNANYNSDLFDTLDMDRIPDVVLVKKLYRRTTKR-NRNWKLKRMAKEHKDIDASADYSS 433
Query: 336 R------EKVNNEYEEFLRDL 350
R E+ +YE FL++L
Sbjct: 434 RQQKQEMERAEMDYETFLQEL 454
>gi|151944116|gb|EDN62409.1| conserved protein [Saccharomyces cerevisiae YJM789]
Length = 518
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 133/500 (26%), Positives = 209/500 (41%), Gaps = 139/500 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG + S MC C+K VDIT+ + + ANI+ C
Sbjct: 16 TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 76 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVE 135
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 136 YIVIAMQCPDCARSYTT---NTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISE 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T + K++ SVEI I
Sbjct: 193 AKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPIC 252
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ FV+ +K++N++ +DP TL+ L YWR+PF AL
Sbjct: 253 KDDLVVLPKKLAKSMGNISQFVLSSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADV 312
Query: 234 RQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV VA T ND + R+HLG + GD +GY
Sbjct: 313 TQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGY 372
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N + PD + +KK Y QRK +K KLK + E +D S
Sbjct: 373 FIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMAKEHKDIDASL 428
Query: 332 CGADR------EKVNNEYEEFLRDLMASVTDKEDV------------------------- 360
R E+ +YE FL++L ++ V
Sbjct: 429 DYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDA 488
Query: 361 PSVPLDYLLADLDSSDKEEG 380
P + +D LL +LD E+G
Sbjct: 489 PQINIDELLDELDEMTLEDG 508
>gi|241958934|ref|XP_002422186.1| 60S ribosomal export protein NMD3 [Candida dubliniensis CD36]
gi|223645531|emb|CAX40190.1| large ribosomal subunit nuclear export factor, putative [Candida
dubliniensis CD36]
Length = 519
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 133/499 (26%), Positives = 209/499 (41%), Gaps = 147/499 (29%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S+ MC C+K VDITE + + AN++ C
Sbjct: 20 TVLCCNCGVPMDGSSGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWIRAE 79
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++K+TVQ E + IV+Q+
Sbjct: 80 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKITVQGEAMANTIVQQTFEVE 139
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 140 YVVIA--MQCPDCAKSYTT---NTWRATVQIRQKVPHKRTFLYLEQLILKHNAHVDTVSI 194
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++FF++ ++HA K V+F+ V P + + ++LVS S + K++ SVEI+
Sbjct: 195 QETKDGLDFFYAQKNHAAKMVDFLQAVAPIKVKKSEELVSMDIHSGSSSYKFSYSVEIAP 254
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I AH++GN+ V+C K+TNSI +DP TL+ L + YWR PF +L
Sbjct: 255 ICRDDLVVLPKKLAHSMGNISRLVLCNKITNSIQFMDPNTLQTADLSSPVYWRFPFPSLL 314
Query: 232 TSRQLVEYIVLDVK----------VASTE---------NDTILSTRTHLGHLLILGDYAI 272
+ QLVE+IVLDV+ +A E ND RTHLG +L GD +
Sbjct: 315 DATQLVEFIVLDVEPTGDIRGKYVLADIEVSRASDLGSNDQTFYVRTHLGGILHPGDSCL 374
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSY---------------------------- 304
GY L N N + + P+ + +KK Y
Sbjct: 375 GYYLTNTNINSELWDTLDTDNTPEVVIVKKHYARKSKKSKNRKWKLKRMAREHNDIVAND 434
Query: 305 --KEKNQRKHRKPNPPKLKPLEMEVDGS--------KCGADREKVNNEYEEFLRDLMASV 354
++ Q + R +L E+E D K G ++ +V+ ++ D+
Sbjct: 435 DSRQARQEQERAERDYELFLQELEEDDELRQTINLYKAGDNQPQVSRNHD----DMNDGE 490
Query: 355 TDKEDVPSVPLDYLLADLD 373
D ED P + +D LL +LD
Sbjct: 491 EDDEDAPEIGIDELLDELD 509
>gi|344303871|gb|EGW34120.1| nonsense-mediated mRNA decay protein 3 [Spathaspora passalidarum
NRRL Y-27907]
Length = 516
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 119/392 (30%), Positives = 178/392 (45%), Gaps = 105/392 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S MC C+K VDITE + + AN++ C
Sbjct: 20 TVLCCNCGVPMDGSQGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPGQWIRAE 79
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++KLTVQ E + IV+Q+
Sbjct: 80 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIVQQTFEVE 139
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W AAVQ+ +LI KH+A I
Sbjct: 140 YVVIA--MQCPDCAKSYTT---NTWRAAVQIRQKVPHKRTFLYLEQLILKHNAHVDTISI 194
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++FF+S ++HA K ++F+ V P +++ ++LVS S + + K++ SVEI+
Sbjct: 195 QESKDGLDFFYSQKNHAAKMLDFLSAVAPVKAKKSEELVSTDIHSGSSQYKFSFSVEIAP 254
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I AH+LGN+ V+C+KVTNSI +DP TL+ L Y+RSPF +L
Sbjct: 255 ICRDDLVVLPKKLAHSLGNISRLVLCSKVTNSIQFIDPNTLQIADLSPSIYYRSPFPSLL 314
Query: 232 TSRQLVEYIVLDVK----------VASTE---------NDTILSTRTHLGHLLILGDYAI 272
+ QLVE+IVLDV+ +A E ND RTHLG +L GD +
Sbjct: 315 DATQLVEFIVLDVEPTGDIRGKHVLADIEVSRAADMGVNDQSFYVRTHLGGILHPGDSCM 374
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
GY L N N + S P+ + +KK Y
Sbjct: 375 GYYLTNTNFNSDLWDTLDSDNIPEVVIVKKHY 406
>gi|167537058|ref|XP_001750199.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771361|gb|EDQ85029.1| predicted protein [Monosiga brevicollis MX1]
Length = 521
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 127/477 (26%), Positives = 207/477 (43%), Gaps = 117/477 (24%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
T+ C +CG+ + N + MC C++++VDI+E + K+A+I C
Sbjct: 32 TILCIQCGVAIPPNPAAMCGNCIRTQVDISEGIPKNASIYFCRGCERYLNPPTTWIHAEL 91
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
++K+K+T+QKEVL G I+EQ VV
Sbjct: 92 ESRDLLALCLKRLRGLNKVRLVDAAFVWTEPHSRRVKVKVTIQKEVLSGAILEQGFVV-- 149
Query: 82 RNITCVNLVPG-FMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ P Q D W+A VQ+ +LI KH+A R +IK +
Sbjct: 150 EYVVEHQFCPECHRQEAADTWNACVQVRQKVKHKKTFFHLEQLIIKHNAHDRTLRIKSVP 209
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAH 186
GI+F+F+ RS A + VEF+ VVP + + ++L+S ++ N KYT SVEI I
Sbjct: 210 DGIDFYFNSRSDAKRMVEFLMAVVPCRYKTSERLISSDIQNNNFNYKYTYSVEIVPICKE 269
Query: 187 N-----------LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
+ G + P IC +V S+ ++DPFTL + + +WR PF+A+ +
Sbjct: 270 DVVTLPPALRRQFGGMAPIGICDRVGTSVRIMDPFTLHSADVTSTVFWRHPFRAICSHGG 329
Query: 236 LVEYIVLDVK---------------------VASTE----NDTILSTRTHLGHLLILGDY 270
E++VLD++ VA ND RTHLG++L GD
Sbjct: 330 YTEFMVLDIEPVFGPDGRPVQHGKHVLAEATVARERDLGSNDQQFFVRTHLGNILQPGDL 389
Query: 271 AIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGS 330
G+D+ A ND P+ + +KKSY ++ ++ ++ ++ P E
Sbjct: 390 VWGFDMTTAVVNDEHTNKLNQDHLPEIVLVKKSYSDRRKKSRKRRFKLRMLPKE------ 443
Query: 331 KCGADREKVNNEYEEFLRDLMASVTDKEDVPSVPLDYLL---ADLDSSDKEEGDDSM 384
D +E + +RDL A + D E+ ++ L A+ S + EG+D +
Sbjct: 444 ----DEAVRPDEEDAAMRDLDAFMDDIEEDREYRQNFNLYKNAEYHPSTESEGEDDL 496
>gi|297286492|ref|XP_001096663.2| PREDICTED: 60S ribosomal export protein NMD3 isoform 2 [Macaca
mulatta]
Length = 503
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 127/495 (25%), Positives = 203/495 (41%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +++ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSVSFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI +
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLXXXSLFLVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSTVRDIKRAAGAGMISKKHALGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>gi|365760298|gb|EHN02028.1| Nmd3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840617|gb|EJT43364.1| NMD3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 518
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 124/447 (27%), Positives = 197/447 (44%), Gaps = 118/447 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG + S MC C+K VDIT+ + + ANI+ C
Sbjct: 16 TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQ----S 76
+I++KLTVQ E + I++Q
Sbjct: 76 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRVKLTVQGEAMTNTIIQQIFEVE 135
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 136 YVVIA--MQCPDCARSYT---TNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISI 190
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
+ G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T + K++ SVEI
Sbjct: 191 SEARDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVP 250
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I A ++ ++ FV+C+K++N++ +DP TL+ L YWR+PF AL
Sbjct: 251 ICKDDLVVLPKKLAKSMSDISQFVLCSKISNTVQFMDPTTLQIADLSPSVYWRTPFNALA 310
Query: 232 TSRQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAI 272
QLVE+IVLDV +A T ND + TR+HLG + GD +
Sbjct: 311 DVTQLVEFIVLDVDSTGISRGNRVLADITIARTSDLGVNDQVYYTRSHLGGICHAGDSVM 370
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDG 329
GY + +N N + PD + +KK Y QRK +K KLK + E +D
Sbjct: 371 GYFVANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMAKEHKDIDA 426
Query: 330 SKCGADR------EKVNNEYEEFLRDL 350
S + R E+ +YE FL++L
Sbjct: 427 SLDYSSRAQKQEMERAEKDYELFLQEL 453
>gi|403354861|gb|EJY76990.1| Nonsense-mediated mRNA decay protein, putative [Oxytricha
trifallax]
Length = 608
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 125/464 (26%), Positives = 207/464 (44%), Gaps = 117/464 (25%)
Query: 6 GIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP---------- 55
+F+ +K + CC CG+ N SN C+ CLKS ++IT + K ++ C
Sbjct: 59 SLFSAQK-IRCCDCGVMTTPNESNKCINCLKSHINITNGIPKQIDLFSCKECNRYLRPPW 117
Query: 56 ---------------------------------------KIKLKLTVQKEVLEGVIVEQS 76
+IK+K+T+QKEVL +++QS
Sbjct: 118 VNCELESPELLAVCLKHIHGLKKVKLIDAGFVWTEAHSRRIKVKITIQKEVLNNTLLQQS 177
Query: 77 DVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARAT 120
VV + N C + P W + VQ+ +LI KH A RA
Sbjct: 178 FVVEFVIINKQCDECKKTYT---PHLWSSIVQVRQRVDHKRTFLFLEQLIIKHKAADRAI 234
Query: 121 KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI 180
IK++ GI+F F ++ + K ++F+ VP +S+ +QL++ + K KY+ S++I
Sbjct: 235 GIKEVHDGIDFQFKSKADSAKLIDFISMTVPCKSKQSQQLINSDLTNNIFKYKYSTSIDI 294
Query: 181 SAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ I ++ LG +GP +I K++ SI ++D FT++ LD YW+ F A
Sbjct: 295 APICKDDLVIIPKALSNQLGGIGPMIIVYKISTSIHIVDVFTMQTYELDQITYWKHQFHA 354
Query: 230 LHTSRQLVEYIVLDV------------------KVASTE---------NDTILSTRTHLG 262
L +L E+IV+++ K+ S E NDT S THLG
Sbjct: 355 LCGRDRLTEFIVVNIEEPNKDFNVSRAAAKQKFKMVSVEVQRKEDYGINDTTFSINTHLG 414
Query: 263 HLLILGDYAIGYDLHEANQNDI-ELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLK 321
L D +G+D + N ++I E++N K +P + +KK+Y + QR ++K KLK
Sbjct: 415 ETLNFFDTVLGFDFEQMNFSEIDEVKNMKRGLPS-VVLVKKTYPKARQR-NQKNRVWKLK 472
Query: 322 PLEMEV--DGSKCGADREKVNNEYEEFLRDLMASVTDKEDVPSV 363
LE E + + ++ K N+ RD+ + D E+ P +
Sbjct: 473 TLEKETLDENNHHKKEKSKAKNQ-----RDIDLFMQDIEEEPDL 511
>gi|68488743|ref|XP_711797.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|68488780|ref|XP_711779.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|46433103|gb|EAK92557.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|46433122|gb|EAK92575.1| likely 60s ribosomal subunit nuclear export factor NMD3 [Candida
albicans SC5314]
gi|238880086|gb|EEQ43724.1| nonsense-mediated mRNA decay protein 3 [Candida albicans WO-1]
Length = 520
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/443 (27%), Positives = 197/443 (44%), Gaps = 110/443 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S+ MC C+K VDITE + + AN++ C
Sbjct: 20 TVLCCNCGVPMDGSSGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWIRAE 79
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++K+TVQ E + IV+Q+
Sbjct: 80 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRIKITVQGEAMANTIVQQTFEVE 139
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 140 YVVIA--MQCPDCAKSYTT---NTWRATVQIRQKVPHKRTFLYLEQLILKHNAHVDTVSI 194
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++FF++ ++HA K V+F+ V P + + ++LVS S + K++ SVEI+
Sbjct: 195 QETKDGLDFFYAQKNHAAKMVDFLQAVAPIKVKKSEELVSMDIHSGSSSYKFSYSVEIAP 254
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I AH++GN+ V+C K+TN+I +DP TL+ L A +WRSPF +L
Sbjct: 255 ICRDDLVVLPKKLAHSMGNISRLVLCNKITNAIQFMDPNTLQTADLSAPVFWRSPFPSLL 314
Query: 232 TSRQLVEYIVLDVK----------VASTE---------NDTILSTRTHLGHLLILGDYAI 272
+ Q+VE+IVLD++ +A E ND RTHLG +L GD +
Sbjct: 315 DATQMVEFIVLDIEPTGDIRGKYVLADIEVSRASDLGSNDQTFYVRTHLGGILHPGDSCL 374
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE-----MEV 327
GY L N N + + P+ + +KK Y K+++ + K E
Sbjct: 375 GYYLTNTNINSELWDTLDTDNTPEVVIVKKHYARKSKKSKNRKWKLKRMAREHNDIVAND 434
Query: 328 DGSKCGADREKVNNEYEEFLRDL 350
D + ++E+ +YE FL++L
Sbjct: 435 DSRQARQEQERAERDYELFLQEL 457
>gi|254568344|ref|XP_002491282.1| 60S ribosomal export protein NMD3 [Komagataella pastoris GS115]
gi|238031079|emb|CAY69002.1| Protein involved in nuclear export of the large ribosomal subunit
[Komagataella pastoris GS115]
gi|328352200|emb|CCA38599.1| 60S ribosomal export protein NMD3 [Komagataella pastoris CBS 7435]
Length = 506
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 124/443 (27%), Positives = 196/443 (44%), Gaps = 110/443 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M + MC C+K VDITE + + AN++ C
Sbjct: 17 TVLCCNCGVPMDGTTGLVMCYDCIKLTVDITEGIPREANVSFCRNCERFLQPPGQWIRAE 76
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+IK+KLTVQ E + I++QS
Sbjct: 77 LESRELLALCLRRLKGLNKVRLIDASFIWTEPHSRRIKVKLTVQGEAMTNTIIQQSFEVE 136
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VVM+ + C + F + W AAVQ+ +LI KH+A I
Sbjct: 137 YVVMA--MQCPDCAKSFT---ANTWRAAVQVRQKVPHKRTFLHLEQLILKHNAHVDTISI 191
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
K+ G++F+++ ++HA K ++F+ V P +S+ ++LVS S K+T SVEI
Sbjct: 192 KEAKDGLDFYYAQKNHAAKMIDFISSVAPVKSKKSEELVSADIHSGTSTYKFTFSVEIVP 251
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I AH+LG + V+C+KV+N++ +DP TL+ ++++ Y+R PF L
Sbjct: 252 ICRDDLIVLPKKLAHSLGTISRLVVCSKVSNTVQFIDPNTLQIADINSNVYFRDPFPVLC 311
Query: 232 TSRQLVEYIVLDVK-VASTENDTILS------------------TRTHLGHLLILGDYAI 272
+L+E+IVLDV+ T + IL+ R+HLG LL GD A
Sbjct: 312 NRTELIEFIVLDVEPTGETRGNYILADITVARAADMGNNDQEYYVRSHLGGLLNPGDSAD 371
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR-KHRKPNPPKLKPLEMEV---- 327
GY L +N N + S D + IKK + +R K R ++ ++
Sbjct: 372 GYFLANSNFNSDLFDELDSKNVLDVVLIKKHFSRSARRAKKRAWRLRRMAKEHQDIVAND 431
Query: 328 DGSKCGADREKVNNEYEEFLRDL 350
+ + ++EK +YE FL++L
Sbjct: 432 ESRQAKQEQEKAERDYEIFLQEL 454
>gi|389628958|ref|XP_003712132.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae 70-15]
gi|351644464|gb|EHA52325.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae 70-15]
gi|440473912|gb|ELQ42684.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae Y34]
gi|440484141|gb|ELQ64279.1| nonsense-mediated mRNA decay protein 3 [Magnaporthe oryzae P131]
Length = 525
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/444 (28%), Positives = 199/444 (44%), Gaps = 112/444 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
T+ CC CG I + +C C+K+ DI++ +Q+ A + C
Sbjct: 25 TILCCNCGAPIDGTTATGALCYDCVKTTHDISQGVQREAVLHFCRDCDRWLLPPSSWIMA 84
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+++LKLT+Q V EGV+++QS V
Sbjct: 85 APESRELLALCLKKLKGLNKVRIVDASFIWTEPHSRRVRLKLTIQDAVSEGVLLQQSFEV 144
Query: 80 MSRNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ I P ++ + W A+VQ+ +LI KH A IK+
Sbjct: 145 IY--IVSYQQCPDCAKSYTANVWRASVQVRQKVLHKRTFLFLEQLILKHGAHRDTINIKE 202
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
GI+FFFS R+ A KFV+F+ VP +++ ++L+S+ + K+T VE+ I
Sbjct: 203 AKDGIDFFFSARNQAEKFVDFLHSSVPVRTKKSQELISQDIHTSTKSYKFTFLVELIPIC 262
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +GN+ P V+C ++ S+ LDP TL+ + A YWR+PF+A+ S
Sbjct: 263 KEDLVVLPIKLAKQIGNISPLVLCHRIGTSVNFLDPATLQTAEVSAPIYWRAPFRAIAES 322
Query: 234 RQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGY 274
+ LVE+IV+DV+ + ND RTHL LL GD +GY
Sbjct: 323 KDLVEFIVMDVEPSGVHKGRWSLGEATVARASDLGVNDRTYFARTHLSGLLHAGDSVMGY 382
Query: 275 DLHEANQNDIE---LENYKSL--VPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL---EME 326
L N N+ E LE+ S PD + +KK Y+ + R + KLK + E E
Sbjct: 383 MLTGTNFNNDEFQALEDSNSFGSTIPDVVLVKKHYQRRRNRNKNRNW--KLKRMNKDEGE 440
Query: 327 VDGSKCGADREKVNNEYEEFLRDL 350
+ K AD+E+++ EYE+FLRD+
Sbjct: 441 LLPKK--ADQERLDAEYEQFLRDV 462
>gi|121716925|ref|XP_001275953.1| 60S ribosomal export protein NMD3 [Aspergillus clavatus NRRL 1]
gi|119404110|gb|EAW14527.1| nonsense-mediated mRNA decay protein 3 [Aspergillus clavatus NRRL
1]
Length = 533
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 201/455 (44%), Gaps = 117/455 (25%)
Query: 9 AVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------- 55
++ T+ CC CG I ++A +C C++ VDI++ + + I C
Sbjct: 16 SITATILCCNCGAPIDGTTSAGALCQDCVRLTVDISQGIPREGVIHFCRDCERWLQPPTA 75
Query: 56 ----------------------------------------KIKLKLTVQKEVLEGVIVEQ 75
++K+K+T+Q+E +G IV+Q
Sbjct: 76 WVSAALESKELLALCLRKLRGLAKVRIIDASFIWTEPHSRRVKVKITIQQEAFQGTIVQQ 135
Query: 76 SDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARA 119
S V + C + + + W A+VQ+ +LI KH+A
Sbjct: 136 SFEVEYVVHAQQCPDCQKSYTH---NTWRASVQVRQKVPHKRTFLYLEQLILKHNAHQDT 192
Query: 120 TKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVE 179
IK+ G++FFF+ R+HA K ++F+ V P + + ++L+S + K++ SVE
Sbjct: 193 VNIKEAKDGLDFFFAQRNHAEKMIDFLSSVAPIKVKKSQELISMDIHTSTKSYKFSYSVE 252
Query: 180 ISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFK 228
+ I A +LGN+ P +C +V +++L+DP TL+ + YWR+PFK
Sbjct: 253 LVPICKDDLVALPIKLARSLGNVSPLTLCYRVGTALSLIDPSTLQTADVPTMTYWRAPFK 312
Query: 229 ALHTSRQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHLLILGD 269
L +LVE+IV+D++ VA ND TRTHLG +L +GD
Sbjct: 313 NLADVAELVEFIVMDIEPVGRSNGRFHLAEATVARASDLGSNDQTYFTRTHLGGILHVGD 372
Query: 270 YAIGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKL-KP 322
+GY L +N ND E Y S++ PD + +KK Y K +K R ++ +
Sbjct: 373 SVLGYLLTGSNFNDPNFEALEASSQYSSII-PDVVLVKKHYARKKNKKTRNWRLKRMARE 431
Query: 323 LEMEVDGSKCGA-------DREKVNNEYEEFLRDL 350
E E + G+ ++E++ ++E FLRD+
Sbjct: 432 YEEEALQQQSGSLSRKQEQEQERMEADFEMFLRDV 466
>gi|328706094|ref|XP_001952313.2| PREDICTED: 60S ribosomal export protein NMD3-like [Acyrthosiphon
pisum]
Length = 510
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 120/445 (26%), Positives = 191/445 (42%), Gaps = 119/445 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC+CG+ M N +NMCV+CL+ VDIT+ + K + C
Sbjct: 20 ILCCQCGVPMEPNPANMCVSCLRIHVDITQDIPKQGILQFCRNCERYLQPPFEWISCALE 79
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSR 82
+IK+KLTV EV+ G+ ++Q VV
Sbjct: 80 SKELLGLCLRKLKALNKVKLVDAGFIWTEPHSKRIKVKLTVHGEVMSGMTLQQVFVV--- 136
Query: 83 NITCVNLV--PGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
T N + D+W A VQ+ +L+ KH A IK
Sbjct: 137 EFTVANQMCDDCHRSEAQDYWRALVQVRQKSDNKKTFYYLEQLMLKHKAHKNTLSIKPES 196
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
+G++FF+S S A K V+F+ V+P + +H K+L+S S K+T S+EI +
Sbjct: 197 NGLDFFYSTESQARKLVDFMTAVLPCRYQHSKKLLSHDIHSNTYNYKFTYSMEIVPVMKD 256
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
+ LG + P I +VTNSI L+DP T + + + YWR F+++ S+Q
Sbjct: 257 SVVCLSKKLSQQLGGISPLCIVYRVTNSIKLIDPSTAQLAEVSSSAYWRDSFQSVFKSKQ 316
Query: 236 LVEYIVLDVKVASTEN-------------------------DTILST-----RTHLGHLL 265
L EY V+D++ ++ D L+T R+HLGH+L
Sbjct: 317 LTEYTVMDIEPIMEKDRVQFPGQGQLSYKHMLADVWVVRSCDLGLTTDSIHCRSHLGHVL 376
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEM 325
D +GY + ++N ND + PD I IKK+Y ++ + + R KLK +
Sbjct: 377 KPMDTVLGYAVADSNANDSNFDKLPKSSLPDVILIKKNYPDRARHRRRT---WKLKRMTT 433
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
+ + + E +N+ +EF+ DL
Sbjct: 434 DTE-----MNMESDHNDMDEFMDDL 453
>gi|346973435|gb|EGY16887.1| nonsense-mediated mRNA decay protein [Verticillium dahliae VdLs.17]
Length = 502
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/441 (25%), Positives = 198/441 (44%), Gaps = 108/441 (24%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------ 54
TV C CG + + +C CL+ DI+ +Q+ A +T C
Sbjct: 11 TVLCHNCGAPIDGSTGTICQACLRLTCDISNGVQREATLTFCRDCDRWLLPPQSWIVAQP 70
Query: 55 ---------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMS 81
+IK+K+T+Q EV +GV+++Q+ +
Sbjct: 71 ESRELLALCLKKLRGLNKVRVIDASFVWTEPHSKRIKVKITIQDEVQDGVLLQQAFEAIY 130
Query: 82 RNITCVNLVPGFMQTGPDH-WDAAVQL---------------ELIQKHDAPARATKIKKM 125
+ P ++ H W + VQ+ + I KH A IK+
Sbjct: 131 --VVAYAQCPECAKSFTAHVWRSVVQVRQKNCPHQRTFLFLEQQILKHGAHKETLNIKEA 188
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA 185
G++FFF+ ++ A KFV+F+ VVP + + ++L+S+ + K++ SVE+ I
Sbjct: 189 PSGMDFFFAHKNQADKFVDFLNAVVPVKVKKSQELISQDVHTATKSYKFSSSVELVPICR 248
Query: 186 HNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
+L GN+ P V+C K+ S+ +DP TL+ + + YWRSPF++L +
Sbjct: 249 DDLVALPIKLAKQQGNITPLVLCHKIGTSVYFVDPSTLQISDVSSPVYWRSPFQSLADTT 308
Query: 235 QLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGYD 275
Q+VE++V+D++ NDT RTHLG+LL GD A+GY
Sbjct: 309 QMVEFVVMDIERTGVTRGKWAAAEATVARASDLGVNDTTYFVRTHLGNLLQPGDSAMGYM 368
Query: 276 LHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
+ N N+ E E Y S + PD + +KK Y + + + R+ ++ E E+
Sbjct: 369 ITGTNFNNPEFEAIESSNTYSSRI-PDVMLVKKHYPRRKKNRKRQWKLKRMAKDEGELLP 427
Query: 330 SKCGADREKVNNEYEEFLRDL 350
+ AD+++++ +YE+FL+D+
Sbjct: 428 KQ--ADQDRMDAQYEQFLQDV 446
>gi|302407027|ref|XP_003001349.1| 60S ribosomal export protein NMD3 [Verticillium albo-atrum
VaMs.102]
gi|261359856|gb|EEY22284.1| nonsense-mediated mRNA decay protein [Verticillium albo-atrum
VaMs.102]
Length = 502
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/441 (25%), Positives = 198/441 (44%), Gaps = 108/441 (24%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------ 54
TV C CG + + +C CL+ DI+ +Q+ A +T C
Sbjct: 11 TVLCHNCGAPIDGSTGTICQACLRLTCDISNGVQREATLTFCRDCDRWLLPPQSWIVAQP 70
Query: 55 ---------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMS 81
+IK+K+T+Q EV +GV+++Q+ +
Sbjct: 71 ESRELLALCLKKLRGLNKVRVIDASFVWTEPHSKRIKVKITIQDEVQDGVLLQQAFEAIY 130
Query: 82 RNITCVNLVPGFMQTGPDH-WDAAVQL---------------ELIQKHDAPARATKIKKM 125
+ P ++ H W + VQ+ + I KH A IK+
Sbjct: 131 --VVAYAQCPECAKSFTAHVWRSVVQVRQKNCPHQRTFLFLEQQILKHGAHKETLNIKEA 188
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA 185
G++FFF+ ++ A KFV+F+ VVP + + ++L+S+ + K++ SVE+ I
Sbjct: 189 PSGMDFFFAHKNQADKFVDFLNAVVPVKVKKSQELISQDVHTATKSYKFSSSVELVPICR 248
Query: 186 HNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
+L GN+ P V+C K+ S+ +DP TL+ + + YWRSPF++L +
Sbjct: 249 DDLVALPIKLAKQQGNITPLVLCHKIGTSVYFVDPSTLQISDVSSPVYWRSPFQSLADTT 308
Query: 235 QLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGYD 275
Q+VE++V+D++ NDT RTHLG+LL GD A+GY
Sbjct: 309 QMVEFVVMDIERTGVTRGKWAAAEATVARASDLGVNDTTYFVRTHLGNLLQPGDSAMGYM 368
Query: 276 LHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDG 329
+ N N+ E E Y S + PD + +KK Y + + + R+ ++ E E+
Sbjct: 369 ITGTNFNNPEFEAIESSNTYSSRI-PDVMLVKKHYPRRKKNRKRQWKLKRMAKDEGELLP 427
Query: 330 SKCGADREKVNNEYEEFLRDL 350
+ AD+++++ +YE+FL+D+
Sbjct: 428 KQ--ADQDRMDAQYEQFLQDV 446
>gi|189206437|ref|XP_001939553.1| 60S ribosomal export protein NMD3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975646|gb|EDU42272.1| nonsense-mediated mRNA decay protein 3 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 512
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 170/347 (48%), Gaps = 57/347 (16%)
Query: 56 KIKLKLTVQKEVLEGVIVEQS-DVVMSRNIT-CVNLVPGFMQTGPDHWDAAVQL------ 107
+IK+K+TVQ E+ EG I++QS +V ++N C + + + W A VQ+
Sbjct: 112 RIKVKITVQSEINEGAIMQQSFEVEYTQNYNQCPDCAKSYTH---NTWRACVQVRQKVPH 168
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH A IK++ GI+FFF+ R+HAV F +F+ V+P + ++
Sbjct: 169 KRTFLYLEQLILKHGAHKDTINIKEVHDGIDFFFAQRNHAVSFCDFLKAVIPVNIKRSEE 228
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+S + K++ S EI I A +GN+ P +CT++ S+ LLD
Sbjct: 229 LISHDIHTSTKNYKFSFSCEIVPICKDDLVVLPIPLAKKIGNISPLTLCTRIGTSVQLLD 288
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE------------------ 250
P TL+ + D YWR+PF+ L ++L E+IVLD++ +
Sbjct: 289 PATLQTADVATDIYWRTPFRPLADVQELTEFIVLDIEPLGKQSGRNFLAEATVARASDMG 348
Query: 251 -NDTILSTRTHLGHLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSY 304
NDT RTHLG +L +GD +GY L N N +E N + PD + +KK Y
Sbjct: 349 VNDTTYYCRTHLGGILHVGDSVMGYLLSNTNFNSELFDVLESNNKYASAIPDVMLVKKYY 408
Query: 305 -KEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ K + R ++ E E+ K D+EK+ ++E FL+D+
Sbjct: 409 QRSKKNKNKRNWRVKRMNKEEGEMLPRK--QDQEKMERDFEMFLQDV 453
>gi|330906474|ref|XP_003295489.1| 60S ribosomal export protein NMD3 [Pyrenophora teres f. teres 0-1]
gi|311333193|gb|EFQ96416.1| hypothetical protein PTT_01269 [Pyrenophora teres f. teres 0-1]
Length = 516
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 170/347 (48%), Gaps = 57/347 (16%)
Query: 56 KIKLKLTVQKEVLEGVIVEQS-DVVMSRNIT-CVNLVPGFMQTGPDHWDAAVQL------ 107
+IK+K+TVQ E+ EG I++QS +V ++N C + + + W A VQ+
Sbjct: 116 RIKVKITVQSEINEGAIMQQSFEVEYTQNYNQCPDCAKSYTH---NTWRACVQVRQKVPH 172
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH A IK++ GI+FFF+ R+HAV F +F+ V+P + ++
Sbjct: 173 KRTFLYLEQLILKHGAHKDTINIKEVHDGIDFFFAQRNHAVSFCDFLKAVIPVNIKRSEE 232
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+S + K++ S EI I A +GN+ P +CT++ S+ LLD
Sbjct: 233 LISHDIHTSTKNYKFSFSCEIVPICKDDLVVLPIPLAKKIGNISPLTLCTRIGTSVQLLD 292
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE------------------ 250
P TL+ + D YWR+PF+ L ++L E+IVLD++ +
Sbjct: 293 PATLQTADVATDIYWRTPFRPLADVQELTEFIVLDIEPLGKQSGRNFLAEATVARASDMG 352
Query: 251 -NDTILSTRTHLGHLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSY 304
NDT RTHLG +L +GD +GY L N N +E N + PD + +KK Y
Sbjct: 353 VNDTTYYCRTHLGGILHVGDSVMGYLLSNTNFNSELFDVLESNNKYASAIPDVMLVKKYY 412
Query: 305 -KEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ K + R ++ E E+ K D+EK+ ++E FL+D+
Sbjct: 413 QRSKKNKNKRNWRVKRMNKEEGEMLPRK--QDQEKMERDFEMFLQDV 457
>gi|213972521|ref|NP_001135423.1| nonsense-mediated mRNA 3 [Nasonia vitripennis]
Length = 506
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 126/449 (28%), Positives = 190/449 (42%), Gaps = 119/449 (26%)
Query: 10 VRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC--------------- 54
++ + CC+C + N +NMCV C+++ VDITE + K A + C
Sbjct: 14 IKAQILCCECATPIEPNPTNMCVGCVRTRVDITEGIPKSAVLYFCRNCERYLHPPGEWIK 73
Query: 55 ------------------------------------PKIKLKLTVQKEVLEGVIVEQSDV 78
+IK+KLTVQ EV+ I++Q +
Sbjct: 74 ATLESRELLALCMRKLKGLNRVKLIDAGFLWTEPHSKRIKVKLTVQGEVMADAILQQVFI 133
Query: 79 V--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
V N C + D+W+A+VQ+ +LI KH A I
Sbjct: 134 VEYTINNQMCDDC---HRTEAKDYWNASVQVRQKAINKKTFYYLEQLILKHRAHENTVAI 190
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
K + G++FF+S S A K +F+ V+P + +H K+L+S S K+T S+EI
Sbjct: 191 KPIHEGLDFFYSTESGARKMTDFINSVLPCKYQHSKKLISHDIHSNVYNYKFTFSIEIVP 250
Query: 183 ISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
+S ++ G L P + KVT+SI L+D + + + ++ YW+ PF ++
Sbjct: 251 VSKDSIVCLPRKLTQKCGGLNPISLVYKVTSSIHLIDVSSGQVAEISSNLYWQLPFNSVC 310
Query: 232 TSRQLVEYIVLDVK--------------------------VASTEN----DTILSTRTHL 261
+QL EY+V+D++ V E+ + TRTHL
Sbjct: 311 NPKQLKEYVVIDIEPIKEKDKKKFPGQGHISHKFAIADVWVVRAEDLGLDQNTIHTRTHL 370
Query: 262 GHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLK 321
G +L GD A+GY L E N ND E PD I IKK Y ++ R+ KLK
Sbjct: 371 GGILKPGDSALGYALRENNINDDNFEKLDENQVPDVILIKKFYGH-DKAARRRARMWKLK 429
Query: 322 PLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ VD + NNEY EFL DL
Sbjct: 430 HIAENVDMN-------SENNEYNEFLDDL 451
>gi|342181787|emb|CCC91266.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 542
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 116/405 (28%), Positives = 173/405 (42%), Gaps = 109/405 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC CG+ + SN SNMC +CL+S VDITESLQK + CP
Sbjct: 19 VLCCMCGLLIDSNPSNMCSSCLRSHVDITESLQKEYIVVYCPECSRYLQPPQYWSRAELE 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
++K+KL +QKEV+ ++++Q+
Sbjct: 79 SRELLTICLKRVKGLGRNAFKLVDAKFVWTEPHSKRLKVKLVLQKEVMSNIVIQQACVVE 138
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV + TC + TG WDA VQL +LI KH +
Sbjct: 139 YVVVWQQCPTCQKVA-----TGQPQWDACVQLRQKVLHKKTFLYLEQLILKHRLQENFIR 193
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
++ G++FFF+ +SHA+ F+EFV P R QLVS +K+ +T S+EI+
Sbjct: 194 VEAQPDGLDFFFAHKSHAMNFLEFVNRNSPVTRRDAVQLVSHDSKNNTAVQHHTFSLEIA 253
Query: 182 AISAHNL------------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ +L G LGP V+ KV ++I L+DP TLR YW+ PF
Sbjct: 254 PLCREDLVILPYQNYYLKLGGLGPLVLVHKVYSNIVLVDPRTLRANEFTGTYYWKKPFLP 313
Query: 230 LHTSRQLVEYIVLDVKVASTEND--------TILS----------TRTHLGHLLILGDYA 271
L SR++VE+ VL N LS +HLG L+ GD
Sbjct: 314 LMNSREMVEFYVLQCTPTGVTNGRYHLGVITVCLSEEVGCGREWIVTSHLGGLVQPGDLV 373
Query: 272 IGYDLHEANQNDIELEN--YKSLVPPDTIKIKKSYKEKNQRKHRK 314
+GY L + N E ++ YK + + ++K + + R+H++
Sbjct: 374 MGYLLEGRSFNHEEWDSNCYKEEQLQEVVLVRKHFPSQRARRHKR 418
>gi|116196790|ref|XP_001224207.1| hypothetical protein CHGG_04993 [Chaetomium globosum CBS 148.51]
gi|88180906|gb|EAQ88374.1| hypothetical protein CHGG_04993 [Chaetomium globosum CBS 148.51]
Length = 820
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 118/419 (28%), Positives = 181/419 (43%), Gaps = 111/419 (26%)
Query: 3 QAAGIFAVRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----- 55
Q G T+ CC CG I ++A +C C+KS VDI++ + + + C
Sbjct: 382 QQLGSARTGATILCCNCGAPIDGTASAGALCYDCIKSTVDISQGIPREGVLHVCRDCDRW 441
Query: 56 ----------------------------------------------KIKLKLTVQKEVLE 69
+IK+K+TVQ V +
Sbjct: 442 LMPPASWVTATLESRELLSLCLKRLRNLGKVRIVDARFVWTEPHSRRIKVKITVQDAVAD 501
Query: 70 GVIVEQSD--VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKH 113
GV+++QS V + N C + + W AAVQ+ +LI KH
Sbjct: 502 GVMMQQSFEVVYVVANQQCRECAKSYTA---NVWRAAVQVRQKVTHKRTFLLLEQLILKH 558
Query: 114 DAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCK 173
A IK+ GI+F+F+ R+ A F+ F+ VVP ++ + L+S T + N K
Sbjct: 559 QAHRDTINIKEEKDGIDFYFAQRNQAEAFIHFLKSVVPVHTKESRHLISADTHTGNKSYK 618
Query: 174 YTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQY 222
Y S E+ + A +LGN+ P V+C ++ S+ LLDP TL+ L A+ Y
Sbjct: 619 YNYSAELVPVCRDDLVALPLKIAKSLGNISPLVLCWRIGTSVNLLDPNTLQTAELSAETY 678
Query: 223 WRSPFKALHTSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGH 263
WR+PF L + ++VE++V+D++ ++ ND RTHLG
Sbjct: 679 WRAPFAPLAGAPEMVEFVVMDIEPSNQRKGKWVLGEATVARASDLGVNDNTYFARTHLGS 738
Query: 264 LLILGDYAIGYDLHEANQNDIEL---EN---YKSLVPPDTIKIKKSY--KEKNQRKHRK 314
LL GD +GY L N N L EN Y S + PD + +KK Y + KN+R++ K
Sbjct: 739 LLHPGDSVMGYMLTGTNFNSDALDAIENSRAYGSTI-PDVVLVKKHYANRRKNKRRNWK 796
>gi|453081261|gb|EMF09310.1| NMD3-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 522
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 195/445 (43%), Gaps = 113/445 (25%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
TV C CG I A +C CLK+ VDIT S+++ + C
Sbjct: 19 TVLCYNCGAPIDGTQAAGALCNDCLKTTVDITSSIERDGILLMCRDCERWHSPPATWVVA 78
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS-DV 78
++K+K+TVQ+E ++G I++Q+ +V
Sbjct: 79 APESRELLALCLRKLRGLHKTRIIDASFIWTEPHSRRVKVKITVQQEAMQGTILQQTFEV 138
Query: 79 VMSRNI-TCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
++N C + + + W A VQ+ +LI K A IK
Sbjct: 139 EFTQNYKQCPDCAKSYTH---NTWRAVVQVRQKVSHKRTFLYLEQLILKQGAHNNTINIK 195
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ +GI+F+F+ R+ A KFV+F+ VVP ++ ++L+S T + K+T SV + I
Sbjct: 196 EVPNGIDFYFAERNSAEKFVDFLQSVVPVTTKKAQELISMDTHTSVKSYKFTFSVNLVPI 255
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A ++GN+ P +C ++ S+ LLDP TL+ L YWR PF L
Sbjct: 256 CKDDLVALPPKLAKSIGNISPLTLCYRIGTSVNLLDPNTLQTADLSTPIYWREPFSPLAA 315
Query: 233 SRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIG 273
S+ L+E++V+D++ ND RTHLG +L GD A+G
Sbjct: 316 SKDLIEFVVMDIEPTGQRHGRFELAEATVVRASDLGVNDNTYLIRTHLGSVLNAGDSAMG 375
Query: 274 Y-----DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL---EM 325
Y + N +E S PD I +KK Y E+ ++K K KL+ + E
Sbjct: 376 YLLSGTQFNNPNWEALEESKKYSGTIPDVILVKKHY-ERTKKKSGKGRNWKLRRMAREES 434
Query: 326 EVDGSKCGADREKVNNEYEEFLRDL 350
E+ K DR+++ +YE+FL+DL
Sbjct: 435 EMKPRKQDQDRDEI--DYEQFLQDL 457
>gi|395528258|ref|XP_003766247.1| PREDICTED: 60S ribosomal export protein NMD3 [Sarcophilus harrisii]
Length = 526
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 131/517 (25%), Positives = 205/517 (39%), Gaps = 157/517 (30%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC+CG+ + N +NMCV CL+++VDI+E + K +I C
Sbjct: 15 VLCCECGVPIPPNPANMCVACLRTQVDISEGIPKQVSINFCKQCERYLQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
++K+KLT+QKEVL G I++Q VV
Sbjct: 75 SRELLTLCLKKIKASLSKVRLIEAGFVWTEPHSKRLKVKLTIQKEVLNGAILQQVFVV-- 132
Query: 82 RNITCVNLVPGFMQT-GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ + + D W A VQ+ +LI KH A +IK++
Sbjct: 133 EYVVQPQMCDACHRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKHRAHQNTLRIKEIH 192
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSR------------------------------- 155
G++F+++ + HA K V+F+ VP ++
Sbjct: 193 DGLDFYYAQKQHAQKMVDFLQCTVPCRAYKQETETLQVVVGPSPTGHRDAPSCPEAALVV 252
Query: 156 HEKQLVSRGTKSRNCKCKYTCSVEISAIS---AHNLGNLGPFVICTKVTNSIALLDPFTL 212
H + G + ++ + +S A +LGN+ +C +VT++I L+DP TL
Sbjct: 253 HRPGCGAHGARGKSVPVSSRLPDNVVCLSPKLAQSLGNMSQICVCIRVTSAIHLIDPNTL 312
Query: 213 RHCYLDADQYWRSPFKALHTSRQLVEYIVLDV---------------------------K 245
+ +D + YWR PF +L +QL E+IV++ K
Sbjct: 313 QIAEIDGNTYWRYPFSSLCHPKQLEEFIVMECSLVHNQKAVAGAGMRSNKHMLAEVWVQK 372
Query: 246 VASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYK 305
+ D RTHLGHLL GD +G+DL N ND + PD + IKKSY
Sbjct: 373 TSEMNTDNQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEYANKMSTHRVPDVVLIKKSYD 432
Query: 306 EKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL--------------- 350
+++ R KLK E++ D D E+ +Y++FL DL
Sbjct: 433 RVKRQRRRNW---KLK--ELDRDKETMDTDDER---QYQDFLEDLEEDETIRKNVNIYKA 484
Query: 351 ----MASVTDKEDVPSVPLDYLLADLDSSDKEEGDDS 383
+ S TD E P + L +L DL S+ G +
Sbjct: 485 STAPVESDTDDEGAPQISLAEMLEDLHISEDATGGEG 521
>gi|156346911|ref|XP_001621572.1| hypothetical protein NEMVEDRAFT_v1g144377 [Nematostella vectensis]
gi|156207654|gb|EDO29472.1| predicted protein [Nematostella vectensis]
Length = 491
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 160/369 (43%), Gaps = 118/369 (31%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------------- 55
CC+CG+ N++NMCV C++S+VDITE + K + + C
Sbjct: 13 CCQCGLPTPPNSANMCVGCIRSQVDITEGIPKQSTLYFCKNCERQVDPPNNWASCALESR 72
Query: 56 -------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMSRNI 84
+IK+KLT+QKEV+ I++Q VV
Sbjct: 73 ELLAICLKKLKGLNKVRLIDAGFVWTEPHSKRIKVKLTIQKEVMNSTILQQVFVVEY--- 129
Query: 85 TCVNLVPGFM------QTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+V G M Q D W A VQ+ +LI KH+ K+K+
Sbjct: 130 ----VVQGQMCDACHRQAAQDFWKAVVQVRQKTSHKKTFFYLEQLIIKHNVHQNTVKVKQ 185
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
GI+F+++ + A KFV+F+ VVP + + ++L+S + KYT SVEI I
Sbjct: 186 ESDGIDFYYASKQDARKFVDFLQSVVPCRFKTSEKLISHDIHNNTFNYKYTFSVEIIPIC 245
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +LGN+G VIC +VT S+ +DP TL+ L A+ YWR PF++L +
Sbjct: 246 REEVICLPLKLARSLGNIGQLVICNRVTTSLQFIDPSTLKTAELLANNYWRLPFQSLGSY 305
Query: 234 RQLVEYIVL-------------------------DVKVASTE----NDTILSTRTHLGHL 264
+ L EY+VL DV VA + ND RTHLG L
Sbjct: 306 KHLTEYMVLQVEPVDPKLQTMGSTTSLSQKHVLADVWVARMQDMGSNDQQFHCRTHLGLL 365
Query: 265 LILGDYAIG 273
L GD +G
Sbjct: 366 LKSGDTVLG 374
>gi|340054441|emb|CCC48737.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 545
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 167/405 (41%), Gaps = 109/405 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC CG+ + SN SNMC +CL+S VDITES+QK + CP
Sbjct: 19 VLCCVCGLLIDSNPSNMCSSCLRSHVDITESVQKEYIVVYCPECSRYLQPPQYWTRANLE 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
++K+KL +QKEV+ +I++Q+ VV
Sbjct: 79 SHELLTICLMRIKGLNRNMFKLVDAKFIWTEPHSKRLKVKLVLQKEVMTNIIIQQACVVE 138
Query: 80 ----MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
+ TC + TG WDA VQL +LI KH +
Sbjct: 139 YVVLWQQCPTCQKVA-----TGQPQWDACVQLRQKVAHKKTFLFLEQLILKHKVHENFIR 193
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
++ G++FFF +SHA+ F+EF+ P R QLVS +K+ +T S+EI+
Sbjct: 194 VETQPGGLDFFFGHKSHALNFLEFIDRNSPVTRRDAVQLVSHDSKNNTAVQHHTFSLEIA 253
Query: 182 AISAHNL------------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ +L G LGP V+ KV +SI LLDP TLR YW+ PF
Sbjct: 254 PLCREDLLLLPYKNYYQKLGGLGPLVLVHKVYSSIVLLDPKTLRASEFTGTYYWKKPFLP 313
Query: 230 LHTSRQLVEYIVLDVKVASTENDTI------------------LSTRTHLGHLLILGDYA 271
L SR++ E+ VL N +HLG L GD A
Sbjct: 314 LMNSREMTEFYVLQCTPTGITNGRYQVGVVTVCLSGEVGQGREWIVTSHLGGQLQPGDLA 373
Query: 272 IGYDLH--EANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRK 314
+GY L N + + + Y+ + + + K + + R+H++
Sbjct: 374 MGYLLQGRSFNHEEWDSQRYRDEQLQEVVLVHKRFPSQRARRHKR 418
>gi|403217918|emb|CCK72410.1| hypothetical protein KNAG_0K00420 [Kazachstania naganishii CBS
8797]
Length = 512
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 119/446 (26%), Positives = 194/446 (43%), Gaps = 111/446 (24%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC+CG + S MC C++ +VDITE + K +N++ C
Sbjct: 20 TLLCCECGTPIDGSTGLVMCHDCIRLKVDITEGIPKESNLSFCRDCERFLQPPGQWVRAK 79
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+IK+K+TVQ E + V+V+Q+ V
Sbjct: 80 LESRELLAICMKRLKGISKVRFVDASFIWTEPHSRRIKVKVTVQGEAMMNVVVQQTFQVE 139
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ C + F + + W A VQ+ +LI KH+A I++
Sbjct: 140 YFVNAMQCPDCAKSFTK---NTWTAKVQVRQKVAHKRTFLYLEQLILKHNAHVDTISIEE 196
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
GI+FF+ ++HAVK V+F+ V+P + + ++LVS+ + + + K++ S+E+ I
Sbjct: 197 AKDGIDFFYGQKNHAVKMVDFINSVMPIKYKRSEELVSQDSHTGSSSYKFSYSIELVPIC 256
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ FV+C+KV+N++ LDP TL+ L A +WR PF +L S
Sbjct: 257 KDDLVVLPKRVAKSMGNITRFVLCSKVSNTVQFLDPVTLQTGELHAATFWREPFPSLADS 316
Query: 234 RQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV++ +ND R+HLG + GD +GY
Sbjct: 317 SQLVEFIVLDVELTGRTEGNRVQAEITVARASDLGQNDQEYYVRSHLGGICHAGDSVMGY 376
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV------- 327
+ +N N + PD + +KK + +K+RK ++ E
Sbjct: 377 FIANSNYNSDLFDELPYDQVPDVVLVKKLQLKNKSKKNRKWKLKRMAKEHNEAAQVQGHG 436
Query: 328 -DGSKCG--ADREKVNNEYEEFLRDL 350
D S D E+ +YE FL L
Sbjct: 437 HDHSNRAEKQDMERAERDYELFLEQL 462
>gi|451856716|gb|EMD70007.1| hypothetical protein COCSADRAFT_78220 [Cochliobolus sativus ND90Pr]
Length = 508
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 173/350 (49%), Gaps = 63/350 (18%)
Query: 56 KIKLKLTVQKEVLEGVIVEQS-DVVMSRNIT-CVNLVPGFMQTGPDHWDAAVQL------ 107
+IK+K+TVQ E+ EG I++Q+ +V ++N C + + + W A VQ+
Sbjct: 111 RIKVKITVQSELNEGAIMQQTFEVEYTQNYNQCPDCAKSYTH---NTWRACVQVRQKVPH 167
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH A IK++ GI+FFF+ R+HAV F +F+ V+P + ++
Sbjct: 168 KRTFLYLEQLILKHGAHKDTINIKEVHDGIDFFFAQRNHAVAFCDFLKAVIPVNIKRSEE 227
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+S + K++ S EI I A +GN+ P +C+++ S+ LLD
Sbjct: 228 LISHDIHTSTKNYKFSFSCEIVPICKDDLVVLPIPLAKKIGNISPLTLCSRIGTSVQLLD 287
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE------------------ 250
P TL+ + D YWR+PF+ L ++L E++VLD++ +
Sbjct: 288 PATLQTADVATDIYWRTPFRPLADVQELTEFVVLDIEPLGKQSGRNFLAEATVARASDMG 347
Query: 251 -NDTILSTRTHLGHLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSY 304
NDT RTHLG +L +GD +GY L N N+ +E N + PD + +KK Y
Sbjct: 348 VNDTTYYCRTHLGGILHVGDSVMGYLLANTNFNNDLFDVLEQNNKYASAIPDVVLVKKYY 407
Query: 305 ----KEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
K KN+R R ++ E E+ K D+EK+ ++E FL+D+
Sbjct: 408 QRSRKSKNKRNWRV---KRMHKEEGEMLPRK--QDQEKMERDFEMFLQDV 452
>gi|451993809|gb|EMD86281.1| hypothetical protein COCHEDRAFT_1146894 [Cochliobolus
heterostrophus C5]
Length = 512
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 173/350 (49%), Gaps = 63/350 (18%)
Query: 56 KIKLKLTVQKEVLEGVIVEQS-DVVMSRNIT-CVNLVPGFMQTGPDHWDAAVQL------ 107
+IK+K+TVQ E+ EG I++Q+ +V ++N C + + + W A VQ+
Sbjct: 115 RIKVKITVQSELNEGAIMQQTFEVEYTQNYNQCPDCAKSYTH---NTWRACVQVRQKVPH 171
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH A IK++ GI+FFF+ R+HAV F +F+ V+P + ++
Sbjct: 172 KRTFLYLEQLILKHGAHKDTINIKEVHDGIDFFFAQRNHAVAFCDFLKAVIPVNIKRSEE 231
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+S + K++ S EI I A +GN+ P +C+++ S+ LLD
Sbjct: 232 LISHDIHTSTKNYKFSFSCEIVPICKDDLVVLPIPLAKKIGNISPLTLCSRIGTSVQLLD 291
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE------------------ 250
P TL+ + D YWR+PF+ L ++L E++VLD++ +
Sbjct: 292 PATLQTADVATDIYWRTPFRPLADVQELTEFVVLDIEPLGKQSGRNFLAEATVARASDMG 351
Query: 251 -NDTILSTRTHLGHLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSY 304
NDT RTHLG +L +GD +GY L N N+ +E N + PD + +KK Y
Sbjct: 352 VNDTTYYCRTHLGGILHVGDSVMGYLLANTNFNNDLFDVLEQNNKYASAIPDVVLVKKFY 411
Query: 305 ----KEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
K KN+R R ++ E E+ K D+EK+ ++E FL+D+
Sbjct: 412 QRSRKSKNKRNWRV---KRMHKEEGEMLPRK--QDQEKMERDFEMFLQDV 456
>gi|50555484|ref|XP_505150.1| 60S ribosomal export protein NMD3 [Yarrowia lipolytica CLIB122]
gi|49651020|emb|CAG77957.1| YALI0F08151p [Yarrowia lipolytica CLIB122]
Length = 505
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 119/449 (26%), Positives = 200/449 (44%), Gaps = 110/449 (24%)
Query: 6 GIFAVRKTVSCCKCGITM---VSNASNMCVTCLKSEVDITESLQKHANITPCP------- 55
+ A + TV C CG + ++N + +C C++ DIT+ + + A++T C
Sbjct: 2 SVSAFKATVLCHNCGTPLDGTLTNGTPICNQCIEMTTDITKEIPREASLTFCRNCDRWLQ 61
Query: 56 --------------------------------------------KIKLKLTVQKEVLEGV 71
+I++K+TVQ E +
Sbjct: 62 PPSSWTAAQPESRELLALCLKRLKGLSKVRLVDASFIWTEPHSRRIRIKVTVQGEAVGQT 121
Query: 72 IVEQSDVVMSRNIT--CVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDA 115
I++QS V I C + F + W A+VQ+ +LI +H+A
Sbjct: 122 IIQQSFEVEYIVIATQCPDCAKSFTA---NTWRASVQIRQKVPHKKTFLYLEQLILRHNA 178
Query: 116 PARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT 175
I++ G++FF+S R+HA+K ++F+ V P + + ++L+S T + + K++
Sbjct: 179 HLDTISIQESRDGLDFFYSQRNHALKMLDFLASVTPCRHKRSEELISMDTHTAKKQYKFS 238
Query: 176 CSVEISAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR 224
SVEI+ I +L N+ P V+CTKVTN++ +DP TL+ + YWR
Sbjct: 239 YSVEIAPICRDDLVVLPPSIAKSNANISPLVLCTKVTNTLHFVDPNTLQTAEIPGSVYWR 298
Query: 225 SPFKALHTSRQLVEYIVLDVK---------------VAST----ENDTILSTRTHLGHLL 265
F +L + +L E+IVLD++ VA NDT + RTHLG +L
Sbjct: 299 KQFPSLADASRLQEFIVLDIEPLGPVKGKFALADATVARVGDMGRNDTTYNIRTHLGGVL 358
Query: 266 ILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL-- 323
GD A GY + +N N+ + PD I +KK Y + ++++R KLK +
Sbjct: 359 HPGDSAYGYYMVTSNFNNAYWDELDKDNLPDVILVKKHYPGRRKKRNRH---WKLKRMAL 415
Query: 324 --EMEVDGSKCGADREKVNNEYEEFLRDL 350
+E D D +K +YE+FL++L
Sbjct: 416 EHNLEDDPKVTKTDLDKAEQDYEQFLQEL 444
>gi|255721895|ref|XP_002545882.1| nonsense-mediated mRNA decay protein 3 [Candida tropicalis
MYA-3404]
gi|240136371|gb|EER35924.1| nonsense-mediated mRNA decay protein 3 [Candida tropicalis
MYA-3404]
Length = 516
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 116/392 (29%), Positives = 174/392 (44%), Gaps = 105/392 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S MC C+K VDITE + + AN++ C
Sbjct: 20 TVLCCNCGVPMDGSQGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWIKAQ 79
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++KLTVQ E + IV+Q+
Sbjct: 80 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIVQQTFEVE 139
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 140 YVVIA--MQCPDCAKSYTT---NTWRATVQIRQKVPHKRTFLYLEQLILKHNAHVDTVSI 194
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++FF++ ++HA K V+F+ V P + + ++LVS S + K++ SVEI+
Sbjct: 195 QESRDGLDFFYAQKNHAAKMVDFLQAVAPIKVKKSEELVSMDIHSGSSSYKFSYSVEIAP 254
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I AH++GN+ V+C KVTNSI +D TL+ L A Y+RSPF +L
Sbjct: 255 ICRDDLVVLPKKLAHSMGNISRLVLCNKVTNSIQFIDSNTLQIADLSAPVYFRSPFPSLL 314
Query: 232 TSRQLVEYIVLDVK----------VASTE---------NDTILSTRTHLGHLLILGDYAI 272
+ QLVE++VLDV+ +A E ND RTHLG +L GD +
Sbjct: 315 DATQLVEFVVLDVEPTGDIRGKYVLADIEVCRASDMGSNDQSFYVRTHLGGILHPGDSCL 374
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
GY L N N + + PD + +KK Y
Sbjct: 375 GYYLSNTNLNSDLWDTLDTDNTPDVVIVKKHY 406
>gi|410971102|ref|XP_003992012.1| PREDICTED: 60S ribosomal export protein NMD3 [Felis catus]
Length = 691
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 182/407 (44%), Gaps = 87/407 (21%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
++K+KLT+QKEV+ G I++Q VV + + C + D W A VQ+
Sbjct: 296 RLKVKLTIQKEVMNGAILQQVFVVDYVVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLH 352
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI K+ +IK++ G++F++S + HA K VEF+ VP + + ++
Sbjct: 353 KKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRHKASQR 412
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+S+ S K T SVEI I A +LGN+ +C +VT++I L+D
Sbjct: 413 LISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPRLAQSLGNMNQICVCIRVTSAIHLID 472
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV------------------------ 244
P TL+ +D +W +PF +L +QL E+IV++
Sbjct: 473 PNTLQVADIDGSTFWSNPFNSLCHPKQLEEFIVMECSIVRDLKRSAGAGMISKKHMLGEV 532
Query: 245 ---KVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIK 301
K + D RTHLGHLL GD +G+DL N ND + S PD + IK
Sbjct: 533 WVQKTSEMNTDKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIK 592
Query: 302 KSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------- 350
K+Y +++ R KLK L E + +R +Y++FL DL
Sbjct: 593 KNYDRTKRQRRRN---WKLKELARERENMDTDDER-----QYQDFLEDLEEDEAIRKNVN 644
Query: 351 --------MASVTDKEDVPSVPLDYLLADLDSSDK---EEGDDSMIE 386
+ S TD E P + L +L DL S EEG+ M +
Sbjct: 645 IYRDSTIPVESDTDDEGAPRISLAEMLEDLHISQDATGEEGESMMTQ 691
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
CC+CG+ + N +N+CV CL+S+VDI++ + K ++ C
Sbjct: 122 CCECGVPISPNPANICVACLRSKVDISQGIPKQVCVSFC 160
>gi|169621570|ref|XP_001804195.1| hypothetical protein SNOG_13995 [Phaeosphaeria nodorum SN15]
gi|111057500|gb|EAT78620.1| hypothetical protein SNOG_13995 [Phaeosphaeria nodorum SN15]
Length = 512
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 167/351 (47%), Gaps = 57/351 (16%)
Query: 56 KIKLKLTVQKEVLEGVIVEQS-DVVMSRNI-TCVNLVPGFMQTGPDHWDAAVQL------ 107
+IK+K+TVQ E+ EG I++QS + ++N C + + + W A VQ+
Sbjct: 112 RIKVKITVQSEINEGAILQQSFECEFTQNYHQCPDCAKSYTH---NTWRACVQVRQKVPH 168
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH A IK++ GI+FFF+ R+HA F +F+ VVP + ++
Sbjct: 169 KRTFLYLEQLILKHGAHKDCINIKEVHDGIDFFFAARNHATTFCDFLKAVVPVNIKKSEE 228
Query: 160 LVSRGTKSRNCKCKYTCSVEISAISAHNL-----------GNLGPFVICTKVTNSIALLD 208
L+S + K++ S EI I +L GN+ P ICT++ S+ LLD
Sbjct: 229 LISMDIHTSTRSFKFSFSCEIVPICKDDLVVLPIPLAKKAGNIAPLTICTRIGTSVQLLD 288
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE------------------ 250
P TL+ + D YWR+PF+ L ++L E+IVLD+ +
Sbjct: 289 PATLQTADIATDLYWRTPFRPLADVQELTEFIVLDIDPLGKQQGRNFLAEATVARASDMG 348
Query: 251 -NDTILSTRTHLGHLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSY 304
ND RTHLG +L +GD +GY L N N +E N S PD + +KK Y
Sbjct: 349 VNDQTYYCRTHLGGILHVGDSVMGYLLSNTNFNSELFDILEGSNKYSAQIPDVMLVKKHY 408
Query: 305 KE-KNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASV 354
+ K + R ++ E E+ K D+EK+ ++E FL+D+ V
Sbjct: 409 QRGKKSKSKRNWRLKRMNRDEGEMLPRK--QDQEKMERDFEMFLQDVEEDV 457
>gi|449019782|dbj|BAM83184.1| nonsense-mediated mRNA decay protein 3 [Cyanidioschyzon merolae
strain 10D]
Length = 580
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/417 (27%), Positives = 172/417 (41%), Gaps = 123/417 (29%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
T+ CC CG + +N SNMCV CL+S+VD+T+ K + C
Sbjct: 13 TILCCLCGAPITANPSNMCVHCLRSQVDLTQGFPKQCALVYCKFCGRYLVPPKTWVRADL 72
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
+I+L+LTVQ EVL I+EQS +V
Sbjct: 73 ESKELMTICLKRLKRLVKLHLVDAAFVWTEPHSRRIRLRLTVQDEVLNRTILEQSFIVEF 132
Query: 80 ---MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
+ + C + W+A VQL +LI KH+A I
Sbjct: 133 VVELQQCADCKREAAKI-----EAWEAVVQLRQRVDHKRTLFYLEQLILKHNAHEDVLGI 187
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++F+F RSHA+KF+ F+ V + R LVS + + KYT S EI
Sbjct: 188 RQQKDGLDFYFVHRSHALKFLSFLHNVACVRQRQSNHLVSHDPSNNVYRYKYTFSAEIPP 247
Query: 183 ISAHNLGNLGPFVICT-----------KVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I +L L P V ++TN I LLDP T ++D YWR AL
Sbjct: 248 ICREDLVYLPPRVATQLGGLSSLLLVHRITNQIRLLDPLTGFEHHIDGATYWRLGLTALM 307
Query: 232 TSRQLVEYIVLDVKVASTE----------------------------NDTILSTRTHLGH 263
+R+L ++VLDV+ + ND RTHLG+
Sbjct: 308 NARRLTAFVVLDVEPVERDPAATSCGHLDQRFRLADATVARAADLGVNDQQFLVRTHLGN 367
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSL-------VPPDTIKIKKSYKEKNQRKHR 313
+L GD +GYDL AN N+ +L ++SL P+ + +K+ Y ++++ K R
Sbjct: 368 ILKAGDLVLGYDLVSANLNESDL--FESLQSDSLKATLPEIVLVKRGYPQRDRTKQR 422
>gi|448527302|ref|XP_003869464.1| Nmd3 nonsense-mediated mRNA decay protein [Candida orthopsilosis Co
90-125]
gi|380353817|emb|CCG23329.1| Nmd3 nonsense-mediated mRNA decay protein [Candida orthopsilosis]
Length = 515
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/392 (28%), Positives = 174/392 (44%), Gaps = 105/392 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S MC C+K VDITE + + AN++ C
Sbjct: 20 TVLCCNCGVPMDGSQGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWVRAQ 79
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++KLTVQ E + IV+Q+
Sbjct: 80 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIVQQTFEVE 139
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 140 YVVIA--MQCADCAKSYTT---NTWRATVQIRQKVPHKRTFLYLEQLILKHNAHMDTVSI 194
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++FF++ ++HA K V+F+ V P + + ++LVS S + K++ S+EI+
Sbjct: 195 QETKDGLDFFYAQKNHAAKMVDFLTSVAPVKVKKSEELVSTDIHSGSSSYKFSYSIEIAP 254
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I AH++GN+ V+C KV N++ +D +L+ L + YWRSPF +L
Sbjct: 255 ICRDDLVVLPKKLAHSMGNISRLVLCNKVNNAMQFIDFSSLQTADLSSQVYWRSPFPSLV 314
Query: 232 TSRQLVEYIVLDVK----------VASTE---------NDTILSTRTHLGHLLILGDYAI 272
+ QLVE+IVLD++ +A E ND RTHLG +L GD +
Sbjct: 315 DATQLVEFIVLDIEPTGDMKGKYVLADIEVSRASDLGSNDQTFYVRTHLGAILHPGDSCL 374
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
GY L +N N + + P+ + +KK Y
Sbjct: 375 GYYLTNSNLNSELWDTLDTDNTPEVVIVKKHY 406
>gi|357604777|gb|EHJ64316.1| nonsense-mediated mRNA 3 [Danaus plexippus]
Length = 467
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 189/429 (44%), Gaps = 122/429 (28%)
Query: 30 MCVTCLKSEVDITESLQKHANITPC----------------------------------- 54
MCV CL++ VDIT+ + K A + C
Sbjct: 1 MCVACLRAHVDITDGIPKQATLFFCRGCERYLQPPAEWVTCALESRELLALCLKRLKGLN 60
Query: 55 ----------------PKIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQT 96
+IK+KLTVQ EV+ G +++Q+ +V + ++ C Q
Sbjct: 61 RVKLADAGFAWTEPHSKRIKVKLTVQGEVMGGTVLQQTFIVEYVIQHQMCDACHRSEAQ- 119
Query: 97 GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKF 142
D+W A VQ+ +LI KH A + IK G++FF++ ++A K
Sbjct: 120 --DYWRALVQVRQRASNRKTFYYLEQLILKHKAHSNTLGIKPKHDGLDFFYATENYARKM 177
Query: 143 VEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNL 191
V+F+ V+P + +H K+L+S S K+T S+EI +S +LG++
Sbjct: 178 VDFIQSVLPIKCQHSKKLISHDIHSNVYNYKFTFSIEIVPVSKDSIVCLPKKLTQSLGSI 237
Query: 192 GPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKV----- 246
P + +VT++I L+D +T + C L + YWR PF A+ +QLVEYIV+D+ +
Sbjct: 238 SPICLVQRVTSTIHLIDAYTGQVCDLSSTMYWRYPFNAICNPKQLVEYIVMDIDILKEHE 297
Query: 247 -------ASTENDTILS------------------TRTHLGHLLILGDYAIGYDLHEANQ 281
N +++ TRTHLGH+L GD +GY+L E+N
Sbjct: 298 KKTFPGQGMVSNKHVVADVWVVKASELGLDVNPIHTRTHLGHILKPGDAVLGYNLGESNV 357
Query: 282 NDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNN 341
ND L+ + PD +KK Y E+ R+ + KLK M GS ++
Sbjct: 358 NDDNLDKLDRDIIPDVYLVKKHYGERAARR--RARAWKLK--HMHEHGS-------TTDD 406
Query: 342 EYEEFLRDL 350
+Y EFL DL
Sbjct: 407 DYNEFLDDL 415
>gi|396464988|ref|XP_003837102.1| similar to nonsense-mediated mRNA decay protein 3 [Leptosphaeria
maculans JN3]
gi|312213660|emb|CBX93662.1| similar to nonsense-mediated mRNA decay protein 3 [Leptosphaeria
maculans JN3]
Length = 516
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 57/347 (16%)
Query: 56 KIKLKLTVQKEVLEGVIVEQS-DVVMSRNIT-CVNLVPGFMQTGPDHWDAAVQL------ 107
+IK+K+TVQ E+ EG I++Q+ +V ++N C + + + W A VQ+
Sbjct: 113 RIKVKITVQSELNEGAIMQQTFEVEYTQNYQQCPDCAKSYTH---NTWRACVQVRQKVPH 169
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH A IK++ GI+FFF+ R+HAV F +F+ V+P + ++
Sbjct: 170 KRTFLYLEQLILKHAAHKDTINIKEVHDGIDFFFAQRNHAVAFCDFLKAVIPVNVKRSEE 229
Query: 160 LVSRG--TKSRNCKCKYTCS---------VEISAISAHNLGNLGPFVICTKVTNSIALLD 208
L+S T ++N K ++C V + A +GN+ P +CT++ SI LLD
Sbjct: 230 LISHDIHTSTKNYKFSFSCDIVPICKDDLVVLPIPLAKKIGNIAPLTLCTRIGTSIQLLD 289
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE------------------ 250
P TL+ + D YWR+PF+ L ++L E+IVLD+ +
Sbjct: 290 PATLQTADVATDVYWRTPFRPLADVQELTEFIVLDIDPLGKQVGKHFLAEATVARASDMG 349
Query: 251 -NDTILSTRTHLGHLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSY 304
NDT RTHLG +L +GD +GY L N N +E N + PD + +KK Y
Sbjct: 350 LNDTTYYCRTHLGGILHVGDSVMGYLLSNTNFNSELFDVLESNNKYASQIPDVMLVKKFY 409
Query: 305 -KEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ K + R ++ E E+ K D+ ++ ++E FL+D+
Sbjct: 410 QRSKKNKNKRNWRVKRMNKEEGEMLPRK--QDQARMEKDFEMFLQDV 454
>gi|354546106|emb|CCE42835.1| hypothetical protein CPAR2_204780 [Candida parapsilosis]
Length = 515
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/392 (28%), Positives = 174/392 (44%), Gaps = 105/392 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S MC C+K VDITE + + AN++ C
Sbjct: 19 TVLCCNCGVPMDGSQGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWIRAQ 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++KLTVQ E + IV+Q+
Sbjct: 79 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRVKLTVQGEAMANTIVQQTFEVE 138
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 139 YVVIA--MQCPDCAKSYTT---NTWRATVQIRQKVPHKRTFLYLEQLILKHNAHMDTVSI 193
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++FF++ ++HA K V+F+ V P + + ++LVS S + K++ S+EI+
Sbjct: 194 QETKDGLDFFYAQKNHAAKMVDFLTSVAPVKVKKSEELVSTDIHSGSSSYKFSFSIEIAP 253
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I AH++GN+ V+C KV N++ +D TL+ L + YWRSPF +L
Sbjct: 254 ICRDDLVVLPKKLAHSMGNISRLVLCNKVNNAMQFVDFSTLQTADLSSQVYWRSPFPSLL 313
Query: 232 TSRQLVEYIVLDVK----------VASTE---------NDTILSTRTHLGHLLILGDYAI 272
+ QLVE+IVLDV+ +A E ND R+HLG +L GD +
Sbjct: 314 DATQLVEFIVLDVEPTGDIKGKYVLADIEVSRASDFGSNDQTFYVRSHLGAILHPGDSCL 373
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
GY L +N N + + P+ + +KK Y
Sbjct: 374 GYYLTNSNLNSELWDTLDTDNTPEVVIVKKHY 405
>gi|294874366|ref|XP_002766920.1| Nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
gi|239868295|gb|EEQ99637.1| Nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
Length = 535
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 159/375 (42%), Gaps = 123/375 (32%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V CC CG +M N SNMCV C+K EVDITE + K A + C
Sbjct: 169 VLCCVCGASMAPNQSNMCVNCMKGEVDITEGISKQAVVNYCRECNRYQRPPWVPCEPESR 228
Query: 55 ------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSRNI 84
++K+KLTVQKEV+ G I++QS +V
Sbjct: 229 ELLGICLKKIKGLNKVKLVDANFIWQAPTSKRMKVKLTVQKEVMNGAIMQQSMIV----- 283
Query: 85 TCVNLVPGFMQTG-------PDHWDAAVQL--------------ELIQKHDAPARATKIK 123
+ + + Q P W+A+VQ+ +LI KHDA + IK
Sbjct: 284 ---DFIVAWQQCDDCKRTYTPHTWNASVQVRQKTDHKRTFYYLEQLILKHDAHEKVVGIK 340
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
+ G++F F RSHA KF EFV VP++ + K L+S + + KYT +++ +
Sbjct: 341 RTPDGLDFHFGHRSHAQKFSEFVLSQVPSRVKQSKHLISHDSHNTTYNYKYTTLIDMCPV 400
Query: 184 SA-----------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
+ LG + P + TKV++ I L+DP T R L +YW++PF+ L T
Sbjct: 401 CKDDVVFLPKALKNKLGGVNPIQVVTKVSSQIRLVDPLTGRVSDLAGIEYWKNPFEPLLT 460
Query: 233 SRQLVEYIVL--------------------------DVKVASTENDT--------ILSTR 258
R LVE+ VL D+++ TEN I++ R
Sbjct: 461 RRHLVEFTVLNVEEDTSRARAATTFNRRGQKAYTMVDLELMRTENSGEAAAGDPEIITVR 520
Query: 259 THLGHLLILGDYAIG 273
+HLG +L GD G
Sbjct: 521 SHLGGVLQPGDLCAG 535
>gi|312070305|ref|XP_003138085.1| NMD3 family protein [Loa loa]
Length = 511
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 174/349 (49%), Gaps = 63/349 (18%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
++KLKLT+Q EVL G +++Q +V + N C + D W A VQ+
Sbjct: 119 RVKLKLTIQSEVLTGAVLQQIFIVEFIVINQMCDDCRRA---EAKDFWRACVQVRQKCEF 175
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+L+ K+ A T IK + G++FF++ A KFV+F+ +P + + ++
Sbjct: 176 KKTLFYLEQLVLKYGAHVSTTAIKPVPTGVDFFYAKLQDARKFVDFITSHLPCRYSYAQE 235
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
LV+ K+ K+T VE+ I A LGN+ V+C +V I+++D
Sbjct: 236 LVTHDVKNNTYDYKHTFCVEVVPICHGDLVCLPKKIAQALGNMNQLVVCFRVNTVISVID 295
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVL-----DVKVAST-------------- 249
TL+ +++ QYWR PF+AL S++L E+ V+ D+++ T
Sbjct: 296 SNTLQIADINSVQYWRDPFQALCQSKRLSEFYVMNVEDIDIQLRGTYSHLSTKHRLVDIW 355
Query: 250 --------ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIK 301
+++ + TR+HLGHLL GD +GYDL +N N L+ K PD I ++
Sbjct: 356 VVPSNQIGQDNQEVCTRSHLGHLLKPGDLVLGYDLRSSNVNSTLLDEMKRDRIPDIILVR 415
Query: 302 KSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
K Y +++ R+ R N +LK L ++ DG C D + NE+E+FL DL
Sbjct: 416 KVY-DRSIRQER--NNWELKRL-IQNDGDVC--DSSFMENEFEDFLEDL 458
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANI 51
+ CC+CG ++ NA NMCV C++S +DITE + K + +
Sbjct: 14 ILCCQCGTSIEPNAMNMCVACVRSRIDITEGIPKQSEV 51
>gi|426342766|ref|XP_004038005.1| PREDICTED: 60S ribosomal export protein NMD3 [Gorilla gorilla
gorilla]
Length = 493
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 126/495 (25%), Positives = 202/495 (40%), Gaps = 146/495 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+ L+ + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFFPFFVTLQIFILQ----------VLIKKSYDRTKRQRRRN---WKLKELARER 418
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 419 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 473
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 474 LEDLHISQDATGEEG 488
>gi|342181785|emb|CCC91264.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 388
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 154/365 (42%), Gaps = 107/365 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC CG+ + SN SNMC +CL+S VDITESLQK + CP
Sbjct: 19 VLCCMCGLLIDSNPSNMCSSCLRSHVDITESLQKEYIVVYCPECSRYLQPPQYWSRAELE 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
++K+KL +QKEV+ ++++Q+
Sbjct: 79 SRELLTICLKRVKGLGRNAFKLVDAKFVWTEPHSKRLKVKLVLQKEVMSNIVIQQACVVE 138
Query: 77 -DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
VV + TC + TG WDA VQL +LI KH +
Sbjct: 139 YVVVWQQCPTCQKVA-----TGQPQWDACVQLRQKVLHKKTFLYLEQLILKHRLQENFIR 193
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
++ G++FFF+ +SHA+ F+EFV P R QLVS +K+ +T S+EI+
Sbjct: 194 VEAQPDGLDFFFAHKSHAMNFLEFVNRNSPVTRRDAVQLVSHDSKNNTAVQHHTFSLEIA 253
Query: 182 AISAHNL------------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ +L G LGP V+ KV ++I L+DP TLR YW+ PF
Sbjct: 254 PLCREDLVILPYQNYYLKLGGLGPLVLVHKVYSNIVLVDPRTLRANEFTGTYYWKKPFLP 313
Query: 230 LHTSRQLVEYIVLDVKVASTEND--------TILS----------TRTHLGHLLILGDYA 271
L SR++VE+ VL N LS +HLG L+ GD
Sbjct: 314 LMNSREMVEFYVLQCTPTGVTNGRYHLGVITVCLSEEVGCGREWIVTSHLGGLVQPGDLV 373
Query: 272 IGYDL 276
+GY L
Sbjct: 374 MGYLL 378
>gi|332024621|gb|EGI64818.1| 60S ribosomal export protein NMD3 [Acromyrmex echinatior]
Length = 466
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 178/428 (41%), Gaps = 116/428 (27%)
Query: 30 MCVTCLKSEVDITESLQKHANITPCP---------------------------------- 55
MCV CL++ VDITE + K A I C
Sbjct: 1 MCVGCLRTHVDITEGIPKQATIQFCKGCERYLQPPSEWIHAALESRELLSLCLKKLKGLN 60
Query: 56 -----------------KIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQT-G 97
++K+KLTV EV+ G ++EQ VV I L +T
Sbjct: 61 RVKLVDAGFIWTEPHSKRLKVKLTVHAEVIGGTVLEQVFVV--EYIVNHQLCEDCHRTEA 118
Query: 98 PDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFV 143
D+W A VQ+ +LI KH A IK + G++F+++ + A K V
Sbjct: 119 KDYWRACVQVRQRATNKKTFYYLEQLILKHKAHEHTLGIKPIHEGLDFYYANEAAARKMV 178
Query: 144 EFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLG 192
+F+ V+P Q +H K+L+S S K+T VEI +S A LG +
Sbjct: 179 DFLMTVMPCQYQHSKRLISHDCHSNLYNYKFTFCVEIVPLSKDSVVCLSRKLAQQLGGIN 238
Query: 193 PFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK------- 245
P + ++TN++ L+D + + + + YWR+ F ++ +QL EYIV+D++
Sbjct: 239 PICLVYRITNAVHLIDFLSGQIAEVSSTVYWRNNFNSICDPKQLTEYIVMDIEPIKYKDR 298
Query: 246 --------------------VASTE---NDTILSTRTHLGHLLILGDYAIGYDLHEANQN 282
V ++E ND TRTHLGH+L GD GY L ++N N
Sbjct: 299 KIFPGQGTISNKHIIADVWLVKASELGINDNPTHTRTHLGHILKPGDSVFGYALKDSNIN 358
Query: 283 DIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNE 342
D + PD I +KK Y N+ RK KLK + EV NNE
Sbjct: 359 DTNFDKLSEDSIPDIILVKKFYGH-NKAARRKARVWKLKHITDEVTSMSTE------NNE 411
Query: 343 YEEFLRDL 350
Y EFL +L
Sbjct: 412 YNEFLDEL 419
>gi|320164255|gb|EFW41154.1| RNA binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 550
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 115/419 (27%), Positives = 184/419 (43%), Gaps = 105/419 (25%)
Query: 30 MCVTCLKSEVDITESLQKHANITPCP---------------------------------- 55
MCV C+++EVDIT+ + KH + C
Sbjct: 1 MCVDCIRNEVDITDGIAKHGILNWCRNCERYLNHNGQNWLVAELESRELLTLCLKKIRGL 60
Query: 56 ------------------KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQ 95
+IK+K+ ++K+ G IV + V+ + +++ C +
Sbjct: 61 GKVRVQDAGFIWTEPHSRRIKVKVVIEKD-FNGAIVRHAFVIEFVVQSLQCPQCQ---RR 116
Query: 96 TGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVK 141
D+W A VQ+ +LI KH A + IK+ G++F++S +S A+K
Sbjct: 117 MANDNWKAIVQVRQRVDHKKTFYFLEQLILKHKAHSFTINIKERPDGLDFYYSSKSDAMK 176
Query: 142 FVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGN 190
V+F+ V P + ++L+S +S K+T SV++ I A LGN
Sbjct: 177 MVDFLNAVAPVTYKTSERLISTDLQSNTSNYKFTYSVDVVPICKNDLVCLPKQLARQLGN 236
Query: 191 LGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV------ 244
+ +IC +V NS+ L+DP TL+ + + R PF+AL + + LVEY +L++
Sbjct: 237 IDQLLICYRVGNSVHLIDPRTLQVTEISVHLFNRHPFRALSSQKHLVEYTILEIEPTGVT 296
Query: 245 --KVASTE-----------NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKS 291
K A E ND + RTHLG++L GD +G+D+ N ND Y +
Sbjct: 297 NGKFAMAEFTAARTRDFGKNDIVFQGRTHLGNVLKTGDTCLGFDIGYLNFNDENANEYPT 356
Query: 292 LVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
PD IKK+Y E+ + RK +L+ L E +G D EK ++E FL DL
Sbjct: 357 DRLPDVALIKKTYPER--IRSRKNRTWRLQTLNKESEGI-SKRDEEKAVADFEGFLEDL 412
>gi|299472700|emb|CBN79871.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 565
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 115/451 (25%), Positives = 190/451 (42%), Gaps = 116/451 (25%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
T+ CC C + + N ++MCV C++++VDITE + + + C
Sbjct: 25 TILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLES 84
Query: 56 --------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--MS 81
++K+KLTVQKEV G +++Q+ VV +
Sbjct: 85 RELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKLTVQKEVGNGAVLQQAMVVTFVV 144
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
RN C F + W A VQ+ +LI KH+A ++ T I+
Sbjct: 145 RNQQCDTCAAAFTD---NTWTAVVQVRQRVDHKRTFFYLEQLILKHNAHSQCTNIQTFKD 201
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS--- 184
G++F+F+ +SH+ +FV+F+ VVP + +H K+LVS S YT V + +
Sbjct: 202 GMDFYFTEKSHSARFVDFLEGVVPTKVKHSKKLVSADNHSNIFNFHYTYLVTLVPVCKDD 261
Query: 185 --------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
A +LGN+ + ++T+++ +DP T + + ++YWR F +L +S +L
Sbjct: 262 LVLLPKRLAESLGNISRLAVAQRITSAVQFVDPLTAQTADVTEEKYWRYEFPSLLSSTRL 321
Query: 237 VEYIVLD---------------------VKVASTE---------NDTILSTRTHLGHLLI 266
V Y+VL +VA E ND ++ +HLGH+L
Sbjct: 322 VPYVVLGTEPLPEKARPSAPRRGHRIRKARVAEVELARECDLGRNDDRVTAVSHLGHILR 381
Query: 267 LGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPP-KLKPLEM 325
GD + YD+ AN + E PD + ++K Y ++ K + KL LE
Sbjct: 382 AGDTVLAYDVSSANLPEGEATGDLKGRLPDVVLVRKVYPRHDREGGGKADRHWKLGELEK 441
Query: 326 EVDGSKCGA------DREKVNNEYEEFLRDL 350
+ G D +YE FL+ L
Sbjct: 442 DGGDGGGGGGVSEKRDEAAAEKDYERFLQQL 472
>gi|149238838|ref|XP_001525295.1| nonsense-mediated mRNA decay protein 3 [Lodderomyces elongisporus
NRRL YB-4239]
gi|146450788|gb|EDK45044.1| nonsense-mediated mRNA decay protein 3 [Lodderomyces elongisporus
NRRL YB-4239]
Length = 519
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/392 (27%), Positives = 172/392 (43%), Gaps = 105/392 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG+ M S MC C+K VDITE + + AN++ C
Sbjct: 20 TVLCCNCGVPMDGSQGLVMCYDCIKLNVDITEGIPREANVSFCRNCERFLQPPGQWIRAQ 79
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++K+TVQ E + IV+Q+
Sbjct: 80 LESRELLALCLRRLKGLNKVRLIDASFIWTEPHSRRIRVKITVQGEAMANTIVQQTFEVE 139
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 140 YVVIA--MQCPDCAKSYTT---NTWRATVQIRQKVPHKRTFLYLEQLILKHNAHMDTVSI 194
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++FF++ ++HA K V+F+ V P + + ++LVS S + K++ SVEI+
Sbjct: 195 QETKDGLDFFYAQKNHAAKMVDFLTSVAPVKVKKSEELVSTDIHSGSSSYKFSYSVEIAP 254
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I AH++GN+ V+C KV N++ +D TL+ L + YWR+PF +L
Sbjct: 255 ICRDDLVVLPKKLAHSMGNISRLVLCNKVNNAMQFVDTNTLQTADLSSQVYWRAPFPSLL 314
Query: 232 TSRQLVEYIVLDVK----------VASTE---------NDTILSTRTHLGHLLILGDYAI 272
+ QLVE++VLDV+ +A E ND R+HLG +L GD +
Sbjct: 315 DATQLVEFVVLDVEPTGDVKGKYVLADIEVSRASDLGNNDQTFYVRSHLGAILHPGDSCL 374
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
GY L N N + + + I +KK Y
Sbjct: 375 GYYLTNTNFNSDLWDTLDTDNTAEVILVKKHY 406
>gi|159486254|ref|XP_001701157.1| hypothetical protein CHLREDRAFT_194349 [Chlamydomonas reinhardtii]
gi|158271960|gb|EDO97769.1| predicted protein [Chlamydomonas reinhardtii]
Length = 337
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 133/289 (46%), Gaps = 80/289 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIV 73
V CC CG ++ N SNMCV C++S+VDITE +QK +
Sbjct: 20 VLCCLCGTNILPNPSNMCVNCIRSQVDITEGIQKQVKLVDA------------------- 60
Query: 74 EQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFF 133
GF+ T P V+L + +++ + GI+FF+
Sbjct: 61 ------------------GFIWTEPHSKRIKVKLTI-----------QVRDIHEGIDFFY 91
Query: 134 SGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL----- 188
+ RSHA KF++F+ VVP + R +KQLVS T + K+T SVEI + +L
Sbjct: 92 ANRSHAQKFIDFLQSVVPIRFRADKQLVSHDTHNNTYNYKFTFSVEIVPLCKDDLVFLPP 151
Query: 189 ------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVL 242
GNLGPFV+ +++TN I+L+DP +R +DA S F
Sbjct: 152 KMAASAGNLGPFVLVSRITNQISLVDPANMRTHTMDAPIARVSDFG-------------- 197
Query: 243 DVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKS 291
+NDT+ RTHLG++L GD +GYDL A I+ +N+ S
Sbjct: 198 -------KNDTVFYVRTHLGNILHPGDTVLGYDLTTAQLTGIDYDNHMS 239
>gi|308080628|ref|NP_001183863.1| uncharacterized protein LOC100502456 [Zea mays]
gi|238015092|gb|ACR38581.1| unknown [Zea mays]
Length = 249
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 129/238 (54%), Gaps = 52/238 (21%)
Query: 188 LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVA 247
+G LGP V+C KVTN+IALLDP TLR +L+ +Y FKA TS+QLVEYIVLD++
Sbjct: 1 MGGLGPLVLCVKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEPE 60
Query: 248 STE-----------------------NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDI 284
S E ND I + RTHLGHLL GD+A+GYDL+ AN ND
Sbjct: 61 SPEICIDGSRYQLAYAQVARMSDFGKNDAIFTVRTHLGHLLNPGDHALGYDLYGANLNDD 120
Query: 285 ELENYKSLVP-PDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGS-KCGADREKVNNE 342
+++ + P+ + +KKSY EK R R KLK L +E D + K + EK +E
Sbjct: 121 DMDMAMTRYSLPEVVLVKKSY-EKRPRTRRW----KLKRLPVEEDAANKAKGEEEKRLDE 175
Query: 343 YEEFLRDL---------------------MASVTDKEDVPSVPLDYLLADLDSSDKEE 379
YE FLRDL MAS T +D+P+VP++ L+ DL D EE
Sbjct: 176 YEAFLRDLEVDSGMWSKMNLYKNEDYRSEMAS-TVGDDIPTVPIEELIEDLTLGDDEE 232
>gi|398392165|ref|XP_003849542.1| hypothetical protein MYCGRDRAFT_75941 [Zymoseptoria tritici IPO323]
gi|339469419|gb|EGP84518.1| hypothetical protein MYCGRDRAFT_75941 [Zymoseptoria tritici IPO323]
Length = 519
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 197/450 (43%), Gaps = 119/450 (26%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
TV C CG I A +C CLK +D+T+ +++ + C
Sbjct: 23 TVLCYNCGAAIDGTQAAGAICTDCLKLTMDVTQGIERDGILLMCRDCDRWLSPPTSWVVA 82
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS-DV 78
+IK+K+TVQ+E ++G I++Q+ DV
Sbjct: 83 APESRELLALCLRKLRGLHKTRIIDASFIWTEPHSRRIKVKITVQQEAMQGAILQQTFDV 142
Query: 79 -VMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
+ + C + F + W + VQ+ +LI K A IK
Sbjct: 143 EFVQQYKQCPDCQKSFTH---NTWSSVVQVRQKVPHKRTFLYLEQLILKQGAHKDTINIK 199
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ +GI+F+F+ ++ A KF +F+ V P +++ ++L+S T + K+T S E+ I
Sbjct: 200 EVHNGIDFYFAAKNQAEKFCDFLNSVTPVRTKKAQELISMDTHTSVRSYKFTFSCELVPI 259
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +GN+ P V+C ++ ++ ++DP TL+ L YWR+PF L
Sbjct: 260 CKDDLVALPPKLAKAIGNISPLVLCHRIGTAVNVIDPNTLQTADLSTPIYWRTPFAPLAD 319
Query: 233 SRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIG 273
+QL+E++V+D++ NDT RTHLG +L GD A+G
Sbjct: 320 VQQLIEFVVMDIEPIGPAKGRFLLAEATVCRSSDLGVNDTTYLIRTHLGGILHAGDTAMG 379
Query: 274 YDLHEANQNDIELENYKSL--------VPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL-- 323
Y L N+ NY++L PD I +KK Y E+ ++K KLK +
Sbjct: 380 YLLSGTQFNN---PNYEALEESKQYSGTIPDVILVKKHY-ERRKKKSANTRNWKLKRMAR 435
Query: 324 -EMEVDGSKCGADREKVNNEYEEFLRDLMA 352
E ++ K DR++++ YE+FL+DL A
Sbjct: 436 EEGDMKPRKQDQDRDEID--YEQFLQDLEA 463
>gi|452838727|gb|EME40667.1| hypothetical protein DOTSEDRAFT_157503 [Dothistroma septosporum
NZE10]
Length = 520
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 173/352 (49%), Gaps = 62/352 (17%)
Query: 56 KIKLKLTVQKEVLEGVIVEQS-DV-VMSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
+IK+K+TVQ+E EG I++Q+ DV + + C + + + W A VQ+
Sbjct: 116 RIKVKITVQQEAGEGTILQQTFDVEFVQQYKQCPDCAKSYTH---NTWRANVQVRQKVPH 172
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI K A IK++ +GI+F+F R+HA FV+F+G V P +++ ++
Sbjct: 173 KRTFLYLEQLILKQGAHKETINIKEVQNGIDFYFGQRNHAEAFVDFLGSVAPVKTKKSQE 232
Query: 160 LVSRGTKS--------RNCKCKYTCSVEISAIS---AHNLGNLGPFVICTKVTNSIALLD 208
L+S + +C+ C ++ A+ A +GN+ P V+C ++ ++ LD
Sbjct: 233 LISMDVHTSSKSYKFSYSCELVPICKDDLVALPLKIAKQIGNIVPLVLCYRIGTAVNFLD 292
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTE------------------ 250
P TL+ L YWR+PF L ++L E++++D++ +
Sbjct: 293 PNTLQIADLSTPIYWRAPFTPLADVQELREFVIMDIEPIGPQVGRFLLAEATVARASDLG 352
Query: 251 -NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE------NYKSLVPPDTIKIKKS 303
NDT + RTHLG++L GD A+GY L N++ E Y + PD I +KK
Sbjct: 353 VNDTTYNIRTHLGNILKPGDSAMGYHLTGTQFNNLNFEAIEESKQYSGQI-PDVILVKKH 411
Query: 304 YKEKNQRKHRKPNPPKLKPLEM---EVDGSKCGADREKVNNEYEEFLRDLMA 352
Y+ +RK++ P+ K M E D D+++ +YE+FL+DL A
Sbjct: 412 YE---RRKNKGPSNRNWKLKRMAREESDMKPRKQDQDRDEIDYEQFLQDLEA 460
>gi|323452298|gb|EGB08172.1| hypothetical protein AURANDRAFT_70174 [Aureococcus anophagefferens]
Length = 530
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 116/393 (29%), Positives = 173/393 (44%), Gaps = 111/393 (28%)
Query: 16 CCKCGITM-VS-NASNMCVTCLKSEVDITESLQKHANITPCPK----------------- 56
CC+CG+ + VS N ++ CV CL++ +DITE + N+ C +
Sbjct: 28 CCECGVGLDVSVNPTSTCVNCLRARIDITEGICTSTNLFKCRRCLRYCAGPTTYVEAELE 87
Query: 57 ----------------------------------IKLKLTVQKEVLEGVIVEQSDV--VM 80
+K++LTVQKEV G I++Q + +
Sbjct: 88 SRELMALCLKRVKGLKRVKVADAAWIWTEPHSMRLKVELTVQKEVDNGAIMQQPLLCEFV 147
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
RN C + F W A+VQ+ ++I K A A A KI++
Sbjct: 148 VRNQQCGDCQAAFASMA---WTASVQVRQRVDHKRTFFYLEQVILKKHAQAAAVKIEQFR 204
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS----- 181
G++FFF ++ AV+FV F+ + VP + + K+LVS T S +YT VE++
Sbjct: 205 DGLDFFFKAKNDAVRFVNFLNDCVPTKVKDTKKLVSADTHSNLFNHQYTSLVELAPACKD 264
Query: 182 ------AISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
A +A LG+L V+ V + L+DP T + L AD YWRSP + L ++ Q
Sbjct: 265 DLVLLDARTAARLGSLPRVVLVRSVNAVVRLVDPRTAQLAELGADAYWRSPPRVLVSAGQ 324
Query: 236 LVEYIVL------------------DVKVAS----TENDTILSTRTHLGHLLILGDYAIG 273
L ++VL DV +A ND L RTHLG LL GD +G
Sbjct: 325 LEAFVVLDSDRVAPGGVRLVRGYVADVTLAREADLGRNDATLLVRTHLGALLRAGDKVMG 384
Query: 274 YDLHEAN---QNDIELENYKSLVPPDTIKIKKS 303
YDL N + D +LE SL PD + ++K+
Sbjct: 385 YDLRATNLPGECDADLE---SLGAPDVVLVRKA 414
>gi|448103873|ref|XP_004200146.1| Piso0_002720 [Millerozyma farinosa CBS 7064]
gi|359381568|emb|CCE82027.1| Piso0_002720 [Millerozyma farinosa CBS 7064]
Length = 506
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 172/392 (43%), Gaps = 105/392 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG+ M S+ MC C+K VDIT + + +N++ C
Sbjct: 19 TMLCCNCGVPMDGSSGLVMCYDCIKLTVDITAGIPRESNVSFCRNCERFLQPPGQWIKAD 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I++K+TVQ E + IV+Q+
Sbjct: 79 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRIKVTVQGEAISNTIVQQTFEVE 138
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 139 YVVIA--MQCPDCARSYT---ANTWRATVQIRQKVSHKRTFLYLEQLILKHNAHLDTVSI 193
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++FF+S ++HA K ++F+ VVP +++ ++LVS+ S + K++ SVE+
Sbjct: 194 QETKDGLDFFYSQKNHAAKMLDFLNTVVPVRTKKSEELVSQDIHSGSSSYKFSFSVELVP 253
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I AH LG + V+C+KV+N + LDP +L+ + YWR+PF +L
Sbjct: 254 ICRDDLVVLPKTLAHQLGYISRLVLCSKVSNLVQFLDPMSLQTADMVPQVYWRNPFPSLL 313
Query: 232 TSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAI 272
+ QLVE+IVLDV+ ND R+HLG +L GD +
Sbjct: 314 DTTQLVEFIVLDVEPTGDMKGKHVLADITVSRASDLGVNDNSFYVRSHLGAILHPGDSCL 373
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
GY L N N ++ + P+ I +KK Y
Sbjct: 374 GYYLTNTNLNSDLFDSLDTDNLPEVILVKKFY 405
>gi|255956303|ref|XP_002568904.1| Pc21g19130 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590615|emb|CAP96810.1| Pc21g19130 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 527
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 117/458 (25%), Positives = 185/458 (40%), Gaps = 124/458 (27%)
Query: 10 VRKTVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------- 54
V T+ CC CG I +A +C C++ VD+ +Q+ A I C
Sbjct: 17 VAATILCCNCGAAIDGTLSAGALCSDCIRLTVDVAGGVQREAVIHCCRDCERWLQPPNSW 76
Query: 55 --------------------------------------PKIKLKLTVQKEVLEGVIVEQS 76
++++K+T+Q E +G IV+Q
Sbjct: 77 VVAALESKELLAICLRKLRGLNKVRIIDASFIWTEPHSKRLRVKITIQTEAFQGTIVQQQ 136
Query: 77 DVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARAT 120
V + N C + W A++Q+ +LI KH+A
Sbjct: 137 FEVEYVVANQQCSGCAKSYTHHS---WTASIQIRQKVPHKRTFLYLEQLILKHNAHKDTI 193
Query: 121 KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI 180
IK+++ G++F+F+ R+ A + + F+ VVP + +L+S + K+ SV I
Sbjct: 194 NIKEVNEGLDFYFAKRNEAERMLSFLSSVVPCTVKKSHELISMDIHTSTSSYKFNFSVSI 253
Query: 181 SAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
I A +L ++ P VIC +V SI L+DP TLR L + YWR PF
Sbjct: 254 IPICKDDLVALPIKLARSLSDISPLVICHRVGTSINLMDPCTLRTADLPSSIYWRQPFPN 313
Query: 230 LHTSRQLVEYIVLDVKVAS-------------------TENDTILSTRTHLGHLLILGDY 270
L + +L E+I+LD++ NDT TRTHLG +L +GD
Sbjct: 314 LADTTELREFIILDIESTGHTNGRYLLSEATVARASDLGSNDTTYFTRTHLGGVLHVGDS 373
Query: 271 AIGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLE 324
+GY L N+ + E Y S + PD + IKK Y + K R +LK +
Sbjct: 374 VLGYHLSGTQFNNDQFEAIENSNQYGSTI-PDVVLIKKHYVRSKKSKARS---WRLKRMA 429
Query: 325 MEVDGSKCGA------------DREKVNNEYEEFLRDL 350
E + A ++ ++ +YE FLRD+
Sbjct: 430 REHEEEATAAVVNVPTNKRQEQEQARMEQDYEMFLRDV 467
>gi|313233349|emb|CBY24463.1| unnamed protein product [Oikopleura dioica]
Length = 494
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 120/482 (24%), Positives = 202/482 (41%), Gaps = 125/482 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKH------------------------- 48
+ CC+CG+ + N +N CVTCLKS+VDIT + +
Sbjct: 14 ILCCQCGVPIEPNPTNTCVTCLKSQVDITAGIPRQSVVNFCKGCDRYLQPPTSWIRAELE 73
Query: 49 ------------------ANITP---------CPKIKLKLTVQKEVLEGVIVEQ----SD 77
A +T C +IK+KLTVQKE+ EG ++EQ
Sbjct: 74 SRELLTLLIKKLKGSLADARLTDASFIWTEPHCKRIKIKLTVQKEIQEGAVLEQIVPIEF 133
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
VV + T V + W + VQ+ ++I K++ +I
Sbjct: 134 VVQGQQCTDCQRV-----EAKNFWKSVVQVRQKVKHKRTFLYLEQVILKYNMFENTLRIG 188
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGT--KSRNCKCKYTCSVEIS 181
HG++FF+ + K VEF+ +VVP + + ++LV T + N K Y C + +
Sbjct: 189 PTQHGLDFFYGRPQDSRKLVEFLQQVVPIKYKTAQKLVGHDTHNATYNYKTTYHCELPVV 248
Query: 182 AIS---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +GN+G +IC +VT++I L+DP TL+ +D YW +PF+ + +
Sbjct: 249 CKDDLVCLDKKLAAKIGNMGQLLICLRVTSTIQLIDPATLQLREVDGSHYWANPFEPIAS 308
Query: 233 SRQLVEYIVLDVKVASTEN------------------------------DTILSTRTHLG 262
S++LV+++V+D ++ T + + + RTHLG
Sbjct: 309 SKRLVKFVVMDKELLRTNDRNHKAGEGKLSFKHQLADLYVIREDELGTHEDYIHCRTHLG 368
Query: 263 HLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
L +GD +GYD+ N N L+ D + ++K Y + +R + + +
Sbjct: 369 QHLDVGDEVLGYDMKNMNCNSEALDGMDG-NHADAVLVRKVYADSRRRTQLRKFKLR-RV 426
Query: 323 LEMEVDGSKCGADREKVNNEYEEFLRDLM-------ASVTDKEDVPSVPLDYLLADLDSS 375
+E + D R + E + R + A+ +D ED+P V L LL ++
Sbjct: 427 IEYKADDDDEDVQRMEEELEEDPEFRTNVNLYRNPDANFSDAEDMPKVDLSELLESVNLD 486
Query: 376 DK 377
DK
Sbjct: 487 DK 488
>gi|448100163|ref|XP_004199288.1| Piso0_002720 [Millerozyma farinosa CBS 7064]
gi|359380710|emb|CCE82951.1| Piso0_002720 [Millerozyma farinosa CBS 7064]
Length = 506
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 105/392 (26%), Positives = 171/392 (43%), Gaps = 105/392 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG+ M S+ MC C+K VDIT + + +N++ C
Sbjct: 19 TMLCCNCGVPMDGSSGLVMCYDCIKLTVDITAGIPRESNVSFCRNCERFLQPPGQWIKAD 78
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQS---- 76
+I+LK+TVQ E + I++Q+
Sbjct: 79 LESRELLALCLRRLKGLNKVRLVDASFIWTEPHSRRIRLKVTVQGEAISNAIIQQTFEVE 138
Query: 77 DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
VV++ + C + + + W A VQ+ +LI KH+A I
Sbjct: 139 YVVIA--MQCPDCARSYT---ANTWRATVQIRQKVAHKRTFLYLEQLILKHNAHLDTVSI 193
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ G++FF+S ++HA K ++F+ VVP +++ ++LVS+ S + K++ SVE+
Sbjct: 194 QETKDGLDFFYSQKNHAAKMLDFLNTVVPVRTKKSEELVSQDIHSGSSSYKFSFSVELVP 253
Query: 183 IS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I A LG + V+C+KV+N + LDP +L+ + YWR+PF +L
Sbjct: 254 ICRDDLVVLPKNLAQQLGYISRLVLCSKVSNLVQFLDPMSLQTADMVPQVYWRNPFPSLL 313
Query: 232 TSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAI 272
+ QLVE+IVLDV+ ND R+HLG +L GD +
Sbjct: 314 DTTQLVEFIVLDVEPTGDMKGKHVLADITVSRASDLGVNDNSFYVRSHLGAILHPGDSCL 373
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
GY L N N ++ + P+ I +KK Y
Sbjct: 374 GYYLTNTNLNSDLFDSLDTDNLPEVILVKKFY 405
>gi|443921620|gb|ELU41200.1| RNA binding protein [Rhizoctonia solani AG-1 IA]
Length = 537
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 156/359 (43%), Gaps = 95/359 (26%)
Query: 56 KIKLKLTVQKEV-------LEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQL- 107
++K+KLT+QKEV L+ + + VV + C L + W A VQ+
Sbjct: 103 RVKVKLTIQKEVRVFTSTILQQIFEVEYIVVYGQCPDCTRLA------AKNTWKAMVQVR 156
Query: 108 -------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQS 154
+LI KH A +K+ G++FF++ RSHA+K VEF+ VVP +S
Sbjct: 157 QKVNHKRTFLYLEQLILKHSAQKDTINVKEAKDGLDFFYTQRSHAIKMVEFLNAVVPIRS 216
Query: 155 RHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRH 214
V +A + P +CT+V NSI L+DP TLR
Sbjct: 217 -----------------------VLFAASKSRETNGYIPLTVCTRVGNSIHLIDPATLRS 253
Query: 215 CYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTEN----------------------- 251
L + YWR+PF++L T LVE+ +LD+ + N
Sbjct: 254 TDLSSPIYWRTPFESLATVSDLVEFTILDIDPSGKTNGRWVLADAQVAPNNAFQSHSTGM 313
Query: 252 ---------DTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKK 302
TI TRTHLG +L GD A+GY L AN N E + S PD + +KK
Sbjct: 314 DVDEQEGSTSTIYHTRTHLGGILQPGDTALGYFLSRANFNSDEFDALDSSRVPDVVLVKK 373
Query: 303 SYKEKNQRKHRKPNPPKLKPLEMEVDGSKC-----------GADREKVNNEYEEFLRDL 350
+Y N+RK + +L+ + E + + G D+ +V +YE FL+DL
Sbjct: 374 TY--PNRRKKSRARNWRLRSIAKEANEDESGEGRGALGRRGGLDQARVEADYEAFLQDL 430
>gi|410079869|ref|XP_003957515.1| hypothetical protein KAFR_0E02270 [Kazachstania africana CBS 2517]
gi|372464101|emb|CCF58380.1| hypothetical protein KAFR_0E02270 [Kazachstania africana CBS 2517]
Length = 519
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 168/386 (43%), Gaps = 101/386 (26%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
TV CC CG + S MC C+K VDI+E + + AN++ C
Sbjct: 21 TVLCCNCGTPIDGSGGLVMCYDCIKMTVDISEGIPREANVSFCRNCERFLQPPGQWIRAD 80
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + G I++Q+ V
Sbjct: 81 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRVKLTVQGEAMAGTIIQQTFEVE 140
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 141 YIVIAMQCPDCARSYT---TNTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISE 197
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T + + K++ SVEI I
Sbjct: 198 SRDGLDFFYAQKNHAVKMIDFLNSVVPIKYKKSEELISQDTHTGSSTYKFSYSVEIVPIC 257
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++G++ FV+C+K++N++ +DP TL+ L YWR F L +
Sbjct: 258 RDDLVVLPKKLAKSMGDISQFVLCSKISNTVQFIDPTTLQIADLSPSVYWRYNFPPLADA 317
Query: 234 RQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV+ ND + ++HLG ++ GD +GY
Sbjct: 318 SQLVEFIVLDVESTGISRGKNVLADVCVARASDLGVNDQVYYIKSHLGGIIHAGDTVMGY 377
Query: 275 DLHEANQNDIELENYKSLVPPDTIKI 300
+ +N N + + PD + +
Sbjct: 378 FVSNSNYNSDLFDGLQLDYVPDVVLV 403
>gi|430813858|emb|CCJ28843.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 527
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 174/371 (46%), Gaps = 72/371 (19%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDH-WDAAVQL------- 107
KIK+K+T+QKEVL I++Q+ V + P + H W A VQ+
Sbjct: 127 KIKVKVTIQKEVLISTILQQTFEVEYTMV--YQQCPDCARIYTAHTWKALVQIRQKVDHK 184
Query: 108 -------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQL 160
+LI +H A A+ IK++ G++F++ RSHA+KF+EF+ VVP +++ ++L
Sbjct: 185 RTFLYLEQLILRHHAHRDASSIKEVKDGLDFYYLNRSHAIKFLEFLSTVVPVKTKKSEEL 244
Query: 161 VSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDP 209
+S KS K+T SVE+ I A ++GNL V+C KV NSI ++DP
Sbjct: 245 ISMDIKSNISSYKFTYSVELIPICKDDLVCLPKDMAKSMGNLEQLVLCYKVGNSIHVIDP 304
Query: 210 FTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLD-----------------------VKV 246
+L+ + YW+ PF +L + LVE+IVLD K
Sbjct: 305 RSLQIGNIVPAIYWKMPFFSLCNVKDLVEFIVLDSMFYILFNYLLYIYIVELLGPVTCKF 364
Query: 247 ASTENDTILS-----------TRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP- 294
A E I S +HLG +L GD +GY L +N N E Y+
Sbjct: 365 ALAEVQVIRSFDLGSNSNPYFVYSHLGSILKPGDIVMGYYLENSNFNSSIFEMYQETCAY 424
Query: 295 -PDTIKIKKSYKEKNQRKHRKPNPPKLKPL----EMEVDGSKCGADREKVNNEYEEFLRD 349
P+ I +KK Y + RK + KLK L + E +G K D+ ++YE FL+D
Sbjct: 425 VPEIILVKKGYPSR--RKKSRIRNWKLKTLFSKEKSETNGKK--YDQTCFEDDYECFLQD 480
Query: 350 LMASVTDKEDV 360
L + + +V
Sbjct: 481 LEEDIELRRNV 491
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLT 62
CC CG+T+ S+ S MC+ C+K VDIT+ ++ I K L ++
Sbjct: 20 CCDCGVTISSSLSTMCIDCIKVNVDITDGIKSLMGILYSYKFDLGIS 66
>gi|339246087|ref|XP_003374677.1| 60S ribosomal export protein Nmd3 [Trichinella spiralis]
gi|316972075|gb|EFV55768.1| 60S ribosomal export protein Nmd3 [Trichinella spiralis]
Length = 593
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 129/486 (26%), Positives = 195/486 (40%), Gaps = 141/486 (29%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG + N +N CV C+++ VDITE + + + C
Sbjct: 129 ILCCQCGTLINPNPANKCVACIRTTVDITECIPRQCQLYSCKFCNRYLNPPSTWVHADLE 188
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMSR 82
+IK+ LT+QKEVL GVI++QS VV
Sbjct: 189 SKELLRICLKKIPVLKQVRLVDAKFIWTEPHSKRIKVMLTIQKEVLGGVILQQSVVV--- 245
Query: 83 NITCVNLVPGFMQT--GPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAV 140
N + Q D+W A VQ+ H G++FF+S HA
Sbjct: 246 EYVIHNQMCDACQKIEAKDYWRACVQIRQKSTHKKS-----------GMDFFYSKNQHAW 294
Query: 141 KFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLG 189
K V+F+G V+ +Q K+LV+ S K T SVEI + A +LG
Sbjct: 295 KLVQFIGSVLASQYGTSKELVTHDASSNIYDYKRTYSVEIVPVCKDDIVCLSKNLAQSLG 354
Query: 190 NLGPFVICTKVTNSIALLDPFTLRH-CYLDADQYWRSPFKALHTSRQLVEYIVLDVKVAS 248
N +IC + + I L++P T R C + + YWRSPF ++ EY VLDV+ +
Sbjct: 355 NFSQVLICYRTSKFIHLVEPHTGRGVCEVSPNVYWRSPFYSIAQHADFFEYTVLDVEWIN 414
Query: 249 TE-----------NDTILST--------------------RTHLGHLLILGDYAIGYDLH 277
E ND L+ RTHLG++L GD +G+D
Sbjct: 415 VEDCLRYANGETANDKYLAVEALVVRSSELGRLDAKQYYCRTHLGYVLKAGDTVLGFDTV 474
Query: 278 EANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADRE 337
N N+ +N+ SL D + K ++ + + KLK LE E+ + +
Sbjct: 475 GCNVNN---DNFNSLNRDDVADVILVRKIFDRTRRNRRRLWKLKRLEAEL------METD 525
Query: 338 KVNNEYEEFLRDLMASVTDKE----------------------DVPSVPLDYLLADLDSS 375
++N+Y FL DL +E D+P+V L +L+DL +
Sbjct: 526 SLDNDYTGFLEDLEEDSVLREKVNIYRDPTKQHIPVAEDEFDDDLPAVDLQEMLSDLCIN 585
Query: 376 DKEEGD 381
D+E D
Sbjct: 586 DQEMDD 591
>gi|403221190|dbj|BAM39323.1| nonsense-mediated mRNA decay protein [Theileria orientalis strain
Shintoku]
Length = 512
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 171/405 (42%), Gaps = 118/405 (29%)
Query: 14 VSCCKCG-ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
+ C CG V +S MC TCL VD++E++ H I C
Sbjct: 19 MQCFLCGEFVAVPTSSRMCATCLTKSVDLSENVSTHCTILQCSTCARFYHDRWLNCELES 78
Query: 56 --------------------------------KIKLKLTVQKEVLEGVIVEQS-----DV 78
K+K+KL QKEV +VEQ+ +
Sbjct: 79 KELLSICLKKIKGIELLKIVEANFKWTEPHSKKLKIKLLAQKEVDNNCVVEQTLNIDFAI 138
Query: 79 VMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
V ++ C + P W A VQ+ ++I K++A I
Sbjct: 139 VSTQCSNCKQMY------TPHTWKAMVQIRQKTKDKKHILLLEQIILKNNAHENVLNILS 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+G + F R+ A KF +FV + + AQ ++ K+LV++ + KYT V + I
Sbjct: 193 RRNGFDLHFPSRNDAQKFADFVTDKIVAQVKNSKKLVTQDVNNNKYNYKYTLHVSLVPIC 252
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
+L G + PF++CT +T++I LLDPFTLR + +D+YWR PF++ ++
Sbjct: 253 VDDLVFLSPKVCSVYGGVSPFLLCTNLTSTITLLDPFTLRRLEISSDKYWRHPFESRKSN 312
Query: 234 RQ-------------LVEYIVL-----------------DVKVASTENDTILSTRTHLGH 263
+ L E+IVL DV++ ++ + ++ T++HLG
Sbjct: 313 ERKSNNGVSVFNKFNLYEFIVLNIERDYSKKQESHYELVDVEIMASNSSKVIYTKSHLGK 372
Query: 264 LLILGDYAIGYDLHEANQNDIELE--NYKSLVPPDTIKIKKSYKE 306
+L +G +GYD+ N N + E N K +P D I ++K+ K+
Sbjct: 373 ILTVGGSYLGYDIRRINMNGLSEEETNIKKKIPFDVILVRKAKKQ 417
>gi|146089650|ref|XP_001470437.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134070470|emb|CAM68813.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 563
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 148/311 (47%), Gaps = 57/311 (18%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV-----MSRNITCVNLVPGFMQTGPDHWDAAVQL--- 107
+IKL+LTVQKEV ++++Q+ VV + TC + TG WDA VQL
Sbjct: 121 RIKLRLTVQKEVFNNIVIQQACVVEYVVTWQQCTTCQRVA-----TGQPQWDACVQLRQK 175
Query: 108 -----------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRH 156
+LI K +I+ G++FFF+ +SHA+ F+EF+ + P R
Sbjct: 176 VNHKKTFLYLEQLILKKRLHENFIRIEGQPDGLDFFFAHKSHAMNFLEFLNKTAPVTRRD 235
Query: 157 EKQLVSRGTKSRNCKCKYTCSVEISAISAHNL-------------GNLGPFVICTKVTNS 203
QLVS +K+ +T +++I+ + +L G +GP V+ KV +S
Sbjct: 236 AVQLVSHDSKNNTAVQHFTFALDIAPLCREDLILIPYKDYYLKSLGGMGPLVLVHKVFSS 295
Query: 204 IALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTI--------L 255
I +DP TLR + YW+ PF +L TSR+LVE+ VL+ ++ N T L
Sbjct: 296 IVFMDPRTLRAGEITGALYWKKPFASLQTSRELVEFYVLECQLMPVTNGTYQLGLVTVCL 355
Query: 256 S----------TRTHLGHLLILGDYAIGYDLHEA--NQNDIELENYKSLVPPDTIKIKKS 303
S ++HLG +L GD GY L N D++ YK D I ++K
Sbjct: 356 SDEVGEGREWIVQSHLGGVLHPGDLVKGYLLEGRILNNEDLDENRYKPEQLQDVILVRKF 415
Query: 304 YKEKNQRKHRK 314
+ + R++R+
Sbjct: 416 FPSQKARRNRR 426
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK 56
V CC CG+ + SN SNMC CL++ VDIT+ LQK + CP+
Sbjct: 18 VQCCVCGLVIDSNLSNMCPNCLRAHVDITDDLQKEYILIHCPE 60
>gi|428184182|gb|EKX53038.1| hypothetical protein GUITHDRAFT_101481 [Guillardia theta CCMP2712]
Length = 475
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 167/365 (45%), Gaps = 68/365 (18%)
Query: 1 MVQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------ 54
++QA +A + + CC+CG NAS+MC CLKS VDI+E + + C
Sbjct: 17 LMQANPTYAATRFL-CCECGTPTTWNASSMCHNCLKSRVDISEGITTSVMLQRCRACGRY 75
Query: 55 ---PKI-----------------------KLKLTVQKEVLEGVIVEQSDVVMSRNITCVN 88
PK+ K+K+TVQKEV GV+++Q+ + V
Sbjct: 76 LDAPKMWKSCELESRELLSICLKRIKGMNKVKITVQKEVYTGVLLQQNVAAKQEWLVVVQ 135
Query: 89 LVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGE 148
Q + + +LI KH A R +K++ GI+F+F+ HA KF FV
Sbjct: 136 C----RQRAENKRTFYLLEQLILKHKAHKRTLNVKEVPDGIDFYFANLKHATKFSAFVTS 191
Query: 149 VVPAQSRHEK-QLVSRGTKSRNCKCKYTCSVEISAISA-----------HNLGNLGPFVI 196
V+P++ + +++S+ K+ K K +EI + +NLG +GP V+
Sbjct: 192 VIPSRRKAGGDRVMSQDLKNNVAKMKQAIPIEIIPLCKDDIFCLHPKQHNNLGCIGPLVV 251
Query: 197 CTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLD------------- 243
V ++ ++D + ++ Y+R P AL T + +EYIV+D
Sbjct: 252 VVSVGPNLRVMDWQRMEIHDFRSEVYFRQPRYALQTIKNAIEYIVIDCHPTGLAVGQFLQ 311
Query: 244 --VKVAST----ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDT 297
V +A ND ++ +HLG +L GD +GYDL A ND EL+++ LV P+
Sbjct: 312 AEVTLAKASDLGSNDIQVTCLSHLGAILQAGDTVLGYDLSNAVFNDNELQDWPKLVLPEV 371
Query: 298 IKIKK 302
+KK
Sbjct: 372 FIVKK 376
>gi|398016987|ref|XP_003861681.1| hypothetical protein, conserved [Leishmania donovani]
gi|322499908|emb|CBZ34982.1| hypothetical protein, conserved [Leishmania donovani]
Length = 563
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 148/311 (47%), Gaps = 57/311 (18%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV-----MSRNITCVNLVPGFMQTGPDHWDAAVQL--- 107
+IKL+LTVQKEV ++++Q+ +V + TC + TG WDA VQL
Sbjct: 121 RIKLRLTVQKEVFNNIVIQQACLVEYVVTWQQCTTCQRVA-----TGQPQWDACVQLRQK 175
Query: 108 -----------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRH 156
+LI K +I+ G++FFF+ +SHA+ F+EF+ + P R
Sbjct: 176 VNHKKTFLYLEQLILKKRLHENFIRIEGQPDGLDFFFAHKSHAMNFLEFLNKAAPVTRRD 235
Query: 157 EKQLVSRGTKSRNCKCKYTCSVEISAISAHNL-------------GNLGPFVICTKVTNS 203
QLVS +K+ +T +++I+ + +L G +GP V+ KV +S
Sbjct: 236 AVQLVSHDSKNNTAVQHFTFALDIAPLCREDLILIPYKDYYLKSLGGMGPLVLVHKVFSS 295
Query: 204 IALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTI--------L 255
I +DP TLR + YW+ PF +L TSR+LVE+ VL+ ++ N T L
Sbjct: 296 IVFMDPRTLRAGEITGALYWKKPFASLQTSRELVEFYVLECQLMPVTNGTYQLGLVTVCL 355
Query: 256 S----------TRTHLGHLLILGDYAIGYDLHEA--NQNDIELENYKSLVPPDTIKIKKS 303
S ++HLG +L GD GY L N D++ YK D I ++K
Sbjct: 356 SDEVGEGREWIVQSHLGGVLHPGDLVKGYLLEGRILNNEDLDENRYKPEQLQDVILVRKF 415
Query: 304 YKEKNQRKHRK 314
+ + R++R+
Sbjct: 416 FPSQKARRNRR 426
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK 56
V CC CG+ + SN SNMC CL++ VDIT+ LQK + CP+
Sbjct: 18 VQCCVCGLVIDSNLSNMCPNCLRAHVDITDDLQKEYILIHCPE 60
>gi|154339277|ref|XP_001562330.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062913|emb|CAM39360.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 563
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 149/317 (47%), Gaps = 49/317 (15%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQL-------- 107
+IKL+LTVQKEV V+++Q+ +V V + TG WDA VQL
Sbjct: 121 RIKLRLTVQKEVFHHVVLQQACLVEYVVTWQQCSVCQKVATGQPQWDACVQLRQKVSHKK 180
Query: 108 ------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLV 161
+LI K +I+ G++FFF+ +SHA+ F+EF+ + P R QLV
Sbjct: 181 TFLYLEQLILKKRLHENFIRIEGQPDGLDFFFAHKSHAMNFLEFLNKTAPVTRRDAVQLV 240
Query: 162 SRGTKSRNCKCKYTCSVEISAISAHNL-------------GNLGPFVICTKVTNSIALLD 208
S +K+ +T +++I+ + +L G +GP V+ KV +SI +D
Sbjct: 241 SHDSKNNTAVQHFTFALDIAPLCREDLILIPYKDYYLKSLGGMGPLVLVHKVFSSIVFMD 300
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTI-------------- 254
P TLR + YW+ PF +L TSR+LVE+ VL+ ++ N T
Sbjct: 301 PRTLRAGEITGSLYWKKPFASLQTSRELVEFYVLECQLMPVTNGTYQLGLVTVCLSDEVG 360
Query: 255 ----LSTRTHLGHLLILGDYAIGYDLHEA--NQNDIELENYKSLVPPDTIKIKKSYKEKN 308
++HLG +L G GY L N D++ YK D I ++K + +
Sbjct: 361 EGREWIVQSHLGGVLHPGSLVKGYLLEGRIFNNEDLDENRYKPEQLQDVILVRKVFPSQK 420
Query: 309 QRKHRKPNPPKLKPLEM 325
R+HR+ KLK LE+
Sbjct: 421 ARRHRRLW--KLKKLEI 435
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK 56
V CC CG+ + SN SNMC CL++ VDIT++LQK + CP+
Sbjct: 18 VQCCLCGLVIDSNLSNMCPNCLRAHVDITDNLQKEYILIHCPE 60
>gi|193785612|dbj|BAG51047.1| unnamed protein product [Homo sapiens]
Length = 383
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 163/358 (45%), Gaps = 79/358 (22%)
Query: 97 GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKF 142
D W A +Q+ +LI K+ +IK++ G++F++S + HA K
Sbjct: 29 AKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKM 88
Query: 143 VEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNL 191
VEF+ VP + + ++L+S+ S K T SVEI I A +LGN+
Sbjct: 89 VEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNM 148
Query: 192 GPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVL------DVK 245
+C +VT++I L+DP TL+ +D +W PF +L +QL E+IV+ D+K
Sbjct: 149 NQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPKQLEEFIVMECSIVQDIK 208
Query: 246 VAS---------------TENDTILST------RTHLGHLLILGDYAIGYDLHEANQNDI 284
A+ + + ++T RTHLGHLL GD +G+DL N ND
Sbjct: 209 RAAGAGMISKKHTLGEVWVQKTSEMNTGKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDE 268
Query: 285 ELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYE 344
+ S PD + IKKSY ++ +R+ R+ KLK L E + +R +Y+
Sbjct: 269 HVNKMNSDRVPDVVLIKKSY-DRTKRQRRR--NWKLKELARERENMDTDDER-----QYQ 320
Query: 345 EFLRDL-------------------MASVTDKEDVPSVPLDYLLADLDSSDKEEGDDS 383
+FL DL + S TD E P + L +L DL S G++
Sbjct: 321 DFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEMLEDLHISQDATGEEG 378
>gi|224147658|ref|XP_002188713.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Taeniopygia guttata]
Length = 474
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 113/401 (28%), Positives = 179/401 (44%), Gaps = 101/401 (25%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
+IKLKLTVQKEV+ G +++Q VV + ++ C + D W A VQ+
Sbjct: 100 RIKLKLTVQKEVINGAVLQQVFVVEYVVQSQMCEDC---HRIEAKDFWKAVVQVRQKTVH 156
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH +IK++ G++F++S + HA K V+F+ VP++S+ ++
Sbjct: 157 KKTFYYLEQLILKHRLHQNTLRIKEIHDGLDFYYSSKQHAQKMVDFLQSTVPSRSKSSQR 216
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+S S K T SVEI I A +LGN+ +C +VT++I L+D
Sbjct: 217 LISHDIHSNVYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMSQICVCIRVTSTIRLID 276
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV------------------------ 244
P TL+ +D + YWR PF +L +QL E+I++D+
Sbjct: 277 PRTLQIADIDGNTYWRHPFNSLFHPKQLEEFIIMDINRVHEKKKGAGAGARSVKHTLAEA 336
Query: 245 ---KVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIK 301
K + + D THLGH+L GD +G +L + L+ + IK
Sbjct: 337 WVRKTSELDTDHQYFCCTHLGHILNPGDLVLGKEL-------LFLQ----------VLIK 379
Query: 302 KSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------- 350
KSY +++ R KLK LE + + + +R +Y++FL DL
Sbjct: 380 KSYDRCKRQRRRN---WKLKELERDREATDTDDER-----QYQDFLEDLEEDEAIRKNVN 431
Query: 351 --------MASVTDKEDVPSVPLDYLLADLDSSDKEEGDDS 383
+ S TD + P + L +L DL S G +
Sbjct: 432 IYRNADIPVESDTDDDGAPRISLAEMLEDLHISQDATGGEG 472
>gi|410076590|ref|XP_003955877.1| hypothetical protein KAFR_0B04460 [Kazachstania africana CBS 2517]
gi|372462460|emb|CCF56742.1| hypothetical protein KAFR_0B04460 [Kazachstania africana CBS 2517]
Length = 519
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 124/483 (25%), Positives = 197/483 (40%), Gaps = 133/483 (27%)
Query: 11 RKTVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP-------------- 55
R T+ CC+CG + S MC C+K DIT+ + + AN++ C
Sbjct: 16 RATMLCCECGTPIDGSQGLVMCYDCIKLRADITKDIPREANVSFCRDCERWLQPPGQWVR 75
Query: 56 -------------------------------------KIKLKLTVQKEVLEGVIVEQSDV 78
+IK+K+TVQ E + I++Q+
Sbjct: 76 ANLESRELLAICLRRLKGLNKVRLIDASFIWTEPHSRRIKVKVTVQGEAMMNTIIQQTFE 135
Query: 79 V--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
V + + C + F + W A VQ+ +LI K++A I
Sbjct: 136 VEYVVVAMQCRDCARSFT---ANTWKATVQIRQKVPHKRTFLYLEQLILKNNAHVDTISI 192
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
K+ G++FF+ ++HAVK V+F+ VP + + ++LVS+ + + K++ SVE+
Sbjct: 193 KEAKDGLDFFYEQKNHAVKMVDFLNSNVPVKFKKSEELVSQDSHTGTSSYKFSYSVELVP 252
Query: 183 ISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I +L GN+ FV+C+KV+ ++ LDP TL+ L A YWR+PF AL
Sbjct: 253 ICKDDLVVLPKKISKALGNISQFVLCSKVSTTVQFLDPTTLQTADLSAQVYWRTPFSALA 312
Query: 232 TSRQLVEYIVLDVKVASTE-------------------NDTILSTRTHLGHLLILGDYAI 272
QLVE+IVLDV++ + ND +THLG +L GD +
Sbjct: 313 DVSQLVEFIVLDVELTNKSAGNRVLADVTIARASDLGVNDQEYYVKTHLGGILHAGDSVM 372
Query: 273 GYDLHEANQNDIELENYKSLVPPDTIKIKKSYK-----EKNQRKHRKPNPPKLKPLEMEV 327
GY + +N N ++ K PD + +KK Y +N + R +
Sbjct: 373 GYFIANSNYNSDLFDSLKYDYVPDVVLVKKLYPKKAKKSRNWKLKRMAKEHGDIVASHDY 432
Query: 328 DGSKC-GADREKVNNEYEEFLRDL----------------MAS----------VTDKEDV 360
SK + E+ +YE FL L MA+ +D E+
Sbjct: 433 TSSKVEKQEMERAEKDYELFLEQLEEDEDLRHNVNLYKTGMANQDIEGEEENEFSDDEEA 492
Query: 361 PSV 363
P V
Sbjct: 493 PKV 495
>gi|209876259|ref|XP_002139572.1| NMD3 family protein [Cryptosporidium muris RN66]
gi|209555178|gb|EEA05223.1| NMD3 family protein [Cryptosporidium muris RN66]
Length = 554
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 113/461 (24%), Positives = 198/461 (42%), Gaps = 120/461 (26%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------------- 55
CC CGIT N S MC+ C++SEVDITE + + + C
Sbjct: 21 CCICGITTDINPSRMCINCIRSEVDITEGISRQVILPYCKHCRRFQKPPWISCELESREL 80
Query: 56 -----------------------------KIKLKLTVQKEVLEGVIVEQSDVV--MSRNI 84
++K++ +QKEV+ G I++Q+ +V +
Sbjct: 81 LALCLKKIRGLNNVRLIDASFIWTEPHSRRLKVRCVIQKEVMNGAIMQQTIIVEFYMQGQ 140
Query: 85 TCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIE 130
C + F P W++ VQ+ +LI KH A + + I + G++
Sbjct: 141 QCDDCKRSFT---PHIWNSVVQIRQKVPHKRTFLYLEQLILKHGAHEKVSNIVEKTDGLD 197
Query: 131 FFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL-- 188
F F ++HA K V+FV ++ + +QL+S + S K+T SVE+ + +L
Sbjct: 198 FQFQQKTHAQKLVDFVIHYFISKVKTSRQLISHDSHSNTHHNKFTFSVELCPVCRDDLIF 257
Query: 189 ----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWR---------SPFKA 229
G + FV+C+K+++ + LLDPFT + L ++YW+ F
Sbjct: 258 IPKHLCTNLFGGISSFVLCSKISSRMYLLDPFTGKEAELANEKYWQYAGLSTNNIGAFAI 317
Query: 230 LHTSRQLVEYIVLDVKVAST----------------------ENDTILSTRTHLGHLLIL 267
+ LV++ VL+V+ T + D+ + +THLG +L
Sbjct: 318 ILNKLHLVDFYVLNVEKDLTQLCGNKKIVMAEVEVCKPNDLGQVDSTVIVKTHLGGILHP 377
Query: 268 GDYAIGYDLHEANQNDIELENYKSL-----VPPDTIKIKKSYKEKNQRKHRKPNPPK-LK 321
GD+ GYDL N N ELEN K D I ++++Y + + K++ + P L+
Sbjct: 378 GDWVSGYDLRTLN-NIGELENIKEFQQWLNANHDVILVRRTYAKDLESKYQSISRPWVLQ 436
Query: 322 PLEMEVDGSKCGAD--REKVNNEYEEFLRDLMASVTDKEDV 360
L E+D + ++ +NN+ E F R++ + ++++
Sbjct: 437 RLPREIDENNLDKKYYQDNMNNDIENFKREIETDIEMRKEI 477
>gi|401423822|ref|XP_003876397.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492639|emb|CBZ27916.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 563
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 153/321 (47%), Gaps = 57/321 (17%)
Query: 56 KIKLKLTVQKEVLEGVIVEQS----DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL---- 107
++KL+LTVQKEV ++++Q+ VV + T V TG WDA VQL
Sbjct: 121 RVKLRLTVQKEVFNNIVIQQACVVEYVVTWQQCTMCQRVA----TGQPQWDACVQLRQKV 176
Query: 108 ----------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHE 157
+LI K +I+ G++FFF+ +SHA+ F+EF+ + P R
Sbjct: 177 NHKKTFLYLEQLILKKRLHENFIRIEGQPDGLDFFFAHKSHAMNFLEFLNKTAPVTRRDA 236
Query: 158 KQLVSRGTKSRNCKCKYTCSVEISAISAHNL-------------GNLGPFVICTKVTNSI 204
QLVS +K+ +T +++I+ + +L G +GP V+ KV +SI
Sbjct: 237 VQLVSHDSKNNTAVQHFTFALDIAPLCREDLILIPYKDYYLKSLGGMGPLVLVHKVFSSI 296
Query: 205 ALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTI--------LS 256
+DP TLR + YW+ PF +L TSR+LV++ VL+ ++ N T LS
Sbjct: 297 VFMDPRTLRAGEITGSLYWKKPFASLQTSRELVDFYVLECQLMPVTNGTYQLGLVTVCLS 356
Query: 257 ----------TRTHLGHLLILGDYAIGYDLHEA--NQNDIELENYKSLVPPDTIKIKKSY 304
++HLG +L GD GY L N D++ YK D I ++K +
Sbjct: 357 DEVGEGREWIVQSHLGGVLHPGDLVKGYLLEGRILNNEDLDENRYKPEQLQDVILVRKFF 416
Query: 305 KEKNQRKHRKPNPPKLKPLEM 325
+ R++R+ KLK L++
Sbjct: 417 PSQKARRNRR--LWKLKKLDI 435
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 11 RKTV---SCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK 56
RKTV CC CG+ + SN SNMC CL++ VDIT+ LQK + CP+
Sbjct: 12 RKTVPQVQCCVCGLVIDSNLSNMCPNCLRAHVDITDDLQKEYILIHCPE 60
>gi|157871103|ref|XP_001684101.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68127169|emb|CAJ05023.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 563
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 153/321 (47%), Gaps = 57/321 (17%)
Query: 56 KIKLKLTVQKEVLEGVIVEQS----DVVMSRNITCVNLVPGFMQTGPDHWDAAVQL---- 107
+IKL+LTVQKE+ ++++Q+ VV + T V TG WDA VQL
Sbjct: 121 RIKLRLTVQKEIFNNIVIQQACVVEYVVTWQQCTMCQRVA----TGQPQWDACVQLRQKV 176
Query: 108 ----------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHE 157
+LI K +I+ G++FFF+ +SHA+ F+EF+ + P R
Sbjct: 177 NHKKTFLYLEQLILKKRLHENFIRIEGQPDGLDFFFAHKSHAMNFLEFLNKTAPVTRRDA 236
Query: 158 KQLVSRGTKSRNCKCKYTCSVEISAISAHNL-------------GNLGPFVICTKVTNSI 204
QLVS +K+ +T +++I+ + +L G +GP V+ KV +SI
Sbjct: 237 VQLVSHDSKNNTAVQHFTFALDIAPLCREDLILIPYKDYYLKSLGGMGPLVLVHKVFSSI 296
Query: 205 ALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVASTENDTI--------LS 256
+DP TLR + YW+ PF +L TSR+LV++ VL+ ++ N T LS
Sbjct: 297 VFMDPRTLRAGEITGALYWKKPFASLQTSRELVDFYVLECQLMPVTNGTYQLGLVTVCLS 356
Query: 257 ----------TRTHLGHLLILGDYAIGYDLHEA--NQNDIELENYKSLVPPDTIKIKKSY 304
++HLG +L GD GY L N D++ YK D I ++K +
Sbjct: 357 DEVGKGREWIVQSHLGGVLHPGDLVKGYLLEGRILNNEDLDKNRYKPEQLQDVIIVRKFF 416
Query: 305 KEKNQRKHRKPNPPKLKPLEM 325
+ R++R+ KLK L++
Sbjct: 417 PSQRARRNRR--LWKLKKLDI 435
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 11 RKTV---SCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK 56
RKTV CC CG+ + SN SNMC CL++ VDIT+ LQ+ + CP+
Sbjct: 12 RKTVPQVQCCVCGLVIDSNISNMCANCLRAHVDITDDLQREYILIHCPE 60
>gi|224005310|ref|XP_002296306.1| nonsense mediated decay protein 3-like protein [Thalassiosira
pseudonana CCMP1335]
gi|209586338|gb|ACI65023.1| nonsense mediated decay protein 3-like protein [Thalassiosira
pseudonana CCMP1335]
Length = 598
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/359 (30%), Positives = 174/359 (48%), Gaps = 63/359 (17%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
++K++LT+Q+EV+ G I++QS +V + RN CV F Q W + VQ+
Sbjct: 129 RLKIRLTIQREVVTGTILQQSFIVTFIVRNQQCVECQAAFRQGS---WKSLVQVRQRVGH 185
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH A I+ G++F+F + A +F+ F+ +VVP + + K+
Sbjct: 186 KRTFLYLEQLILKHGAHRGCLSIETFKDGMDFYFPDKGKANRFISFLEDVVPMKVKSSKK 245
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+ KS KYT VEI ++ A ++GN+ V+ V+N I ++D
Sbjct: 246 LIGTDDKSNVSNYKYTNLVEICSLCKDDLLFLPKKLARSIGNINRLVLVKNVSNVINVID 305
Query: 209 PFTLRHCYLDADQYWRSPFKALHTS--RQLVEYIVLD----------VKVAST------- 249
P T + +++D YWR PF+ + T+ +L Y++L K+AS
Sbjct: 306 PLTGQTGNIESDAYWRDPFRPVITAARTRLTRYVILGKDPVFLERNMSKLASITAARESD 365
Query: 250 --ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYK-SLVPPDTIKIKKSYK- 305
ND+ + +HLG+L+ GD +GYDL EA D E E + S PD + ++K Y
Sbjct: 366 LGANDSQMEEHSHLGYLMKSGDVCMGYDLTEAQLVDDEAEELRTSGKLPDFVFVRKLYGG 425
Query: 306 -EKNQRKHRKPNPPKLKPLEMEVDGS-----KCGADREKVNNEYEEFLRDLMASVTDKE 358
+ K KLK L+++ DG K D E N + E+F+++L A DKE
Sbjct: 426 VATGESDAAKKRMFKLKRLDVK-DGEEDKPRKKKKDAEMENVDEEDFMQELEA---DKE 480
>gi|452978805|gb|EME78568.1| hypothetical protein MYCFIDRAFT_157335 [Pseudocercospora fijiensis
CIRAD86]
Length = 514
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/442 (26%), Positives = 182/442 (41%), Gaps = 105/442 (23%)
Query: 13 TVSCCKCG--ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP--------------- 55
TV C CG I A +C CLK +DIT +++ + C
Sbjct: 20 TVLCYNCGAPIDGTQAAGALCSDCLKLTIDITSGIERDGVLHMCRDCDRWHAPPAQWIVA 79
Query: 56 ------------------------------------KIKLKLTVQKEVLEGVIVEQS-DV 78
+IK+K+TVQ+E L+G I++Q+ DV
Sbjct: 80 APESRELLALCLKKLRGLSKTRIIDASFIWTEPHSRRIKVKITVQQEALQGTILQQTFDV 139
Query: 79 VMSRNI-TCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
+ C + + + W A VQ+ +LI K A IK
Sbjct: 140 EFVQQWKQCPDCAKSYTH---NTWRAVVQVRQKVPHKRTFLYLEQLILKQGAHKDTINIK 196
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ +GI+FFF+ R+ A KF++F+ V P ++ +L+S T + K++ S E+ I
Sbjct: 197 EVQNGIDFFFAERNSAEKFLDFLHSVAPVTTKKSHELISMDTHTSKKSYKFSFSCELVPI 256
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +GN+ P +C +V ++ LDP TL+ L YWR+PF L
Sbjct: 257 CKDDLVALPISIARQIGNISPLTLCYRVGTAVNFLDPNTLQTADLSTPIYWRAPFAPLAD 316
Query: 233 SRQLVEYIVLDVK-----------------VASTENDTILSTRTHLGHLLILGDYAIGY- 274
+ LVE+IV+D++ AS ++T RTHLG +L GD +GY
Sbjct: 317 VKDLVEFIVMDIEPVGPVKGRYLLAEATVVRASDTSNTEYLCRTHLGSILHPGDSVMGYL 376
Query: 275 ----DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGS 330
+ N IE S PD I +KK + ++ + K N + E D
Sbjct: 377 MTGTQFNNENYEAIEESKQYSGTIPDVILVKKKFAQRKKNKKNNRNWKLRRMAREESDMK 436
Query: 331 KCGADREKVNNEYEEFLRDLMA 352
D E+ +YE+FL+D+ A
Sbjct: 437 ARKQDLERDEIDYEQFLQDVEA 458
>gi|84998458|ref|XP_953950.1| nonsense-mediated mRNA decay protein (NMD3 ) [Theileria annulata]
gi|65304948|emb|CAI73273.1| nonsense-mediated mRNA decay protein (NMD3 homologue), putative
[Theileria annulata]
Length = 512
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/397 (25%), Positives = 165/397 (41%), Gaps = 106/397 (26%)
Query: 14 VSCCKCG-ITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
+ C CG +S MC TCL VD++E++ H I C
Sbjct: 19 MQCFLCGEFVSAPTSSRMCSTCLTKSVDLSENVSTHCTILQCTTCTRFYHDRWLNCELES 78
Query: 56 --------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMSRN 83
K+K+ +TVQKEV +VEQS + +
Sbjct: 79 KELLSICLKKIKGIDLMKIVDAHFKWTEPHSKKLKVNVTVQKEVENNCVVEQS-LSIDFT 137
Query: 84 ITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGI 129
I P W A VQ+ ++I KH+A I +G
Sbjct: 138 IASAQCASCKQMYTPHTWKALVQIRQKTKDKKHILLLEQIILKHNAHENVLNILSRRNGF 197
Query: 130 EFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL- 188
+ FS R+ A KF +FV + + +Q ++ K+LV++ + KYT V + I +L
Sbjct: 198 DLHFSSRNDAQKFADFVSDKIVSQIKNSKKLVTQDVNNNKYNYKYTLHVSLVPICTDDLV 257
Query: 189 ----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR---- 234
G + PF++C +T++I+L+DPFTLR + +D+YWR+PF + R
Sbjct: 258 FLSPKVSSIYGGISPFLLCINLTSTISLMDPFTLRKLEVSSDKYWRNPFVSCKKWRFNLF 317
Query: 235 ------QLVEYIVL------------------DVKVASTENDTILSTRTHLGHLLILGDY 270
L E+IVL DV++ + + I+ T++HLG +L +G
Sbjct: 318 LVFNKFNLCEFIVLNIEKDYTRKSKDQQYELVDVEIMPSNSSKIIYTKSHLGKILTVGGT 377
Query: 271 AIGYDLHEANQNDIELE--NYKSLVPPDTIKIKKSYK 305
+GYD+ N N + + + + +P D I ++K+ K
Sbjct: 378 YLGYDIKRINMNGLSEQETDISNRIPFDVILVRKAKK 414
>gi|194383890|dbj|BAG59303.1| unnamed protein product [Homo sapiens]
Length = 323
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 143/319 (44%), Gaps = 65/319 (20%)
Query: 121 KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI 180
+IK++ G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI
Sbjct: 7 RIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEI 66
Query: 181 SAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
I A +LGN+ +C +VT++I L+DP TL+ +D +W PF +
Sbjct: 67 VPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNS 126
Query: 230 LHTSRQLVEYIVLDV---------------------------KVASTENDTILSTRTHLG 262
L +QL E+IV++ K + D RTHLG
Sbjct: 127 LCHPKQLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLG 186
Query: 263 HLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
HLL GD +G+DL N ND + S PD + IKKSY +++ R KLK
Sbjct: 187 HLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKE 243
Query: 323 LEMEVDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSV 363
L E + +R +Y++FL DL + S TD E P +
Sbjct: 244 LARERENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRI 298
Query: 364 PLDYLLADLDSSDKEEGDD 382
L +L DL S G++
Sbjct: 299 SLAEMLEDLHISQDATGEE 317
>gi|256085250|ref|XP_002578835.1| nonsense-mediated mRNA decay protein [Schistosoma mansoni]
gi|353228761|emb|CCD74932.1| putative nonsense-mediated mRNA decay protein [Schistosoma mansoni]
Length = 396
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 145/319 (45%), Gaps = 76/319 (23%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIK----------------- 58
CCKCG+ M SN +NMC TCL SE DI E + + +T CPK +
Sbjct: 11 CCKCGVQMYSNTANMCFTCLSSEADIAEHIDRQNTVTFCPKCERYLNPPSNWVSAEPESP 70
Query: 59 --LKLTVQK--EVLEGVIVEQSDVVM----SRNITCVNLVPGFMQTG------------- 97
L L ++K + +G+ V + + SR I+ V G +QTG
Sbjct: 71 ELLSLCIKKIRGLKKGLEVRNARFIWTEPHSRRISIEITVQGTLQTGDRVEQQIPIDFTV 130
Query: 98 -------------PDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIE 130
D W+A VQ+ ++I + A + IK++ GI+
Sbjct: 131 HTQQCTSCTRNAAKDFWNACVQVRQKVDHKKTLLHLEQVILRSGAHKACSNIKQVSGGID 190
Query: 131 FFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI------- 183
FFFS RS AV FV F+ + P + + + L S + KYT SVEI+ +
Sbjct: 191 FFFSTRSQAVTFVNFLSKRSPCRYQTAQHLKSHDVNNNTYNYKYTFSVEIAPVCKNDIVC 250
Query: 184 ----SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEY 239
+ LG + + +KVT++I L+DP T + CY+D+ Y+ SPF ++ T + +
Sbjct: 251 LSRAQSQKLGGISQLCVVSKVTDAIHLIDPLTCQVCYVDSKAYFSSPFMSITTQKHFSPF 310
Query: 240 IVLDVKVASTENDTILSTR 258
+VL+++ ++ + S+R
Sbjct: 311 VVLEIEEQRDDSSQMNSSR 329
>gi|67967886|dbj|BAE00425.1| unnamed protein product [Macaca fascicularis]
Length = 323
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 143/319 (44%), Gaps = 65/319 (20%)
Query: 121 KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI 180
+IK++ G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI
Sbjct: 7 RIKEIHDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEI 66
Query: 181 SAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
+ A +LGN+ +C +VT++I L+DP TL+ +D +W PF +
Sbjct: 67 VPVCKDNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNS 126
Query: 230 LHTSRQLVEYIVLDV---------------------------KVASTENDTILSTRTHLG 262
L +QL E+IV++ K + D RTHLG
Sbjct: 127 LCHPKQLEEFIVMECSTVRDIKRAAGAGMISKKHALGEVWVQKTSEMNTDKQYFCRTHLG 186
Query: 263 HLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
HLL GD +G+DL N ND + S PD + IKKSY +++ R KLK
Sbjct: 187 HLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKE 243
Query: 323 LEMEVDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSV 363
L E + +R +Y++FL DL + S TD E P +
Sbjct: 244 LARERENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRI 298
Query: 364 PLDYLLADLDSSDKEEGDD 382
L +L DL S G++
Sbjct: 299 SLAEMLEDLHISQDATGEE 317
>gi|399218108|emb|CCF74995.1| unnamed protein product [Babesia microti strain RI]
Length = 481
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 159/352 (45%), Gaps = 74/352 (21%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
+IK++ ++KE+ +VEQ VV M R+ C + P WDA VQ+
Sbjct: 100 RIKVQYQLRKEISMKCVVEQQHVVEYMIRSTQCDKCKQSY---TPHSWDAIVQIRHKVKD 156
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+ I KH A KI +G + F ++HA KFVEFV E +Q +H K+
Sbjct: 157 KKEILLLEQAIIKHHAQENVIKIVPQLYGFDLHFGCKNHAQKFVEFVCERTVSQVKHSKK 216
Query: 160 LVSRGTKSRNCKCKYTCSVEISAISAHNL-----------GNLGPFVICTKVTNSIALLD 208
L++ + + + K KY+ +++++ I +L G + F++C + +I L+D
Sbjct: 217 LITHDSNNNSYKYKYSTNIDMAEICRDDLIYLPLKFVSQFGGISSFLLCINLNKTITLID 276
Query: 209 PFTLRHCYLDADQYWRSPFKA------------LHTSRQLV------------------E 238
PFTLR + AD+YWR+PF + +H S+ +V +
Sbjct: 277 PFTLRKVDISADKYWRNPFFSSKQTKTNPVYTKIHLSQFIVANIENSKTYMIAGAKYADK 336
Query: 239 YIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTI 298
Y ++D+++ ++ T +HLG L GD GYDL N + + + VP D I
Sbjct: 337 YQLVDLELIPCGGSEVIYTTSHLGRQLRPGDTCAGYDLRHLNTMNEQQSDALEKVPYDVI 396
Query: 299 KIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+K+ K KHRK P LK L D + N+ EEF DL
Sbjct: 397 IVKRVVK-----KHRKARPWVLKSLTKNTD---------MLFNDLEEFKDDL 434
>gi|348680589|gb|EGZ20405.1| hypothetical protein PHYSODRAFT_350547 [Phytophthora sojae]
Length = 510
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 67/352 (19%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
++KL+LT+Q+EV +V+ + V+ + +I C + + + W A VQ+
Sbjct: 105 RVKLRLTLQREVANHAVVQNTCVITFVIHSIKCPDCTKQYHN---NTWRALVQIRQKAEH 161
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+ I KH+A A I + G++F+F +S A +F+ F+ VP +S+ +
Sbjct: 162 KRTFLRLEQEILKHNAHQDAIGITAVKEGMDFYFGTKSTAERFIHFLSAHVPMRSKSSSK 221
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+S + + T SVE+S I A + GN+ +C + T+ + LLD
Sbjct: 222 LISENVHNSTANLQLTYSVELSPICKDDLLVLPRKFAQSCGNISDVTLCARTTSMVHLLD 281
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK----------------------- 245
P + + L D+YW+ PF L TS +VE+IVLDV+
Sbjct: 282 PVSGQKAELATDRYWKLPFLPLATSSDMVEFIVLDVEPVDPRDLRQVGPAPTSGKGRKSK 341
Query: 246 --VASTE---------NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP 294
VA E NDT RTHLG +L GD GYDL A + + K+ +
Sbjct: 342 YVVADVEVARASDFGVNDTTFQVRTHLGGVLTAGDTVKGYDLSSAIFGSSQTYSLKNEL- 400
Query: 295 PDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEF 346
PD + ++K Y ++ + H+ KLK L G A+ ++ +E E F
Sbjct: 401 PDLVLVRKVYPRESGKHHKGDR--KLKTLGASRRGKVSKAETARLQHEMEVF 450
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
+SCC CG + +NA NMC +C+ +EVD+ E + + C
Sbjct: 3 ISCCMCGAQIEANAMNMCASCIATEVDVAEGIDTECELVQC 43
>gi|308457034|ref|XP_003090920.1| hypothetical protein CRE_27919 [Caenorhabditis remanei]
gi|308260006|gb|EFP03959.1| hypothetical protein CRE_27919 [Caenorhabditis remanei]
Length = 477
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 141/306 (46%), Gaps = 59/306 (19%)
Query: 99 DHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVE 144
D W A VQ+ +L+ KH A T +K + GI+F+F+ + A KFV+
Sbjct: 42 DFWRACVQVRQRAEFKKTLFYLEQLLLKHSAHKECTGVKPVPTGIDFYFAKQQEARKFVD 101
Query: 145 FVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL-----------GNLGP 193
F+ V+P + + ++LVS TK+ K+T VEI I N+ GN+
Sbjct: 102 FLMTVLPCKYHYAQELVSHDTKNNTYDYKHTFCVEIVPICRDNIVCLPKKQAQQYGNMSQ 161
Query: 194 FVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK-------- 245
V+C +V+N I L+DP L+ + A +WR PF +L +QL E+ VLDV+
Sbjct: 162 IVLCLRVSNVITLIDPNNLQLVDVQATNFWREPFDSLCGPKQLTEFYVLDVESIDNFERK 221
Query: 246 --------------VASTENDTI-------LSTRTHLGHLLILGDYAIGYDLHEANQNDI 284
V +D + LS RTHLGHLL GD + +D+ N N+
Sbjct: 222 AGHGYISKKHELADVWLVRSDQVGMSDAQSLSARTHLGHLLSPGDLVMAFDMKNCNVNNA 281
Query: 285 ELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYE 344
+ PD I ++K + + R+ KLK L V G+ G + V +E++
Sbjct: 282 TFDAMSVDNVPDAIIVRKVFDRSRRVAERQ---WKLKKL--VVGGNIVGNETASVADEFQ 336
Query: 345 EFLRDL 350
F+ D+
Sbjct: 337 GFMEDI 342
>gi|428673002|gb|EKX73915.1| nonsense-mediated mRNA decay protein, putative [Babesia equi]
Length = 480
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 142/297 (47%), Gaps = 50/297 (16%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
K+KL++ VQKEV IVEQ+ V R+ C + P W A VQ+
Sbjct: 103 KLKLQILVQKEVENNCIVEQTLFVEFTIRSTQCAACKQMY---TPHTWKALVQIRQKTKD 159
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
++I K++A I +G + F+ R A KF EFV + + +Q ++ K+
Sbjct: 160 KKHMLLLEQIILKNNAHENVLNILSRRNGFDLHFANRPDAQKFAEFVSDKIVSQLKNSKK 219
Query: 160 LVSRGTKSRNCKCKYTCSVEISAI-----------SAHNLGNLGPFVICTKVTNSIALLD 208
L++ + KYT V + + A G + PF++C +T++I LLD
Sbjct: 220 LITADMSNNKYNYKYTIHVSLIPVCTDDVVFLTPKVASMYGGISPFLLCVNLTSTITLLD 279
Query: 209 PFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVL------------------DVKVASTE 250
PFTLR + +D+YWR+PF +L T L E+I+L DV+V +
Sbjct: 280 PFTLRKLDISSDKYWRNPFSSLFTKFNLCEFIILNVDRDYSKKWDDSPYELVDVEVMAVN 339
Query: 251 NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE--NYKSLVPPDTIKIKKSYK 305
+ I+ T++HLG L +G GYD+ N N + E + ++ +P + I ++K+ K
Sbjct: 340 SSKIIYTKSHLGKSLTVGSTFSGYDISRINLNGLSEEETDIENRIPFEVILVRKTKK 396
>gi|156363113|ref|XP_001625892.1| predicted protein [Nematostella vectensis]
gi|156212746|gb|EDO33792.1| predicted protein [Nematostella vectensis]
Length = 428
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 119/466 (25%), Positives = 187/466 (40%), Gaps = 142/466 (30%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------------- 55
CC+CG+ N++NMCV C++S+VDITE + K + + C
Sbjct: 2 CCQCGLPTPPNSANMCVGCIRSQVDITEGIPKQSTLYFCKNCERQVDPPNNWASCALESR 61
Query: 56 -------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMSRNI 84
+IK+KLT+QKEV+ I++Q VV
Sbjct: 62 ELLAICLKKLKGLNKVRLIDAGFVWTEPHSKRIKVKLTIQKEVMNSTILQQVFVVEY--- 118
Query: 85 TCVNLVPGFM------QTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+V G M Q D W A VQ+ +LI KH+ K+K+
Sbjct: 119 ----VVQGQMCDACHRQAAQDFWKAVVQVRQKTSHKKTFFYLEQLIIKHNVHQNTVKVKQ 174
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
GI+F+++ + A KFV+F+ VVP + + ++L+S + KYT SVEI I
Sbjct: 175 ESDGIDFYYASKQDARKFVDFLQSVVPCRFKTSEKLISHDIHNNTFNYKYTFSVEIIPIC 234
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +LGN+G V L+ T ++ + ++ K L+
Sbjct: 235 REEVICLPLKLARSLGNIGKMVPGRHSLKKTLSLNSAT----FVCSGLHYVDVLKGLYIF 290
Query: 234 RQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLV 293
++ + +L H + ++ YD +N ND L K+
Sbjct: 291 LLIISFYLL--------------------HTV----FSCSYDFKNSNINDENLNKMKADK 326
Query: 294 PPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMAS 353
PD I +KKSY +K RK R+ KLK LE E+ ++++ +Y+EFL DL
Sbjct: 327 IPDVILVKKSYGDK--RKRRRARNWKLKVLEKEIG----DINQDQFEKDYDEFLADLEED 380
Query: 354 VT-------------------DKEDVPSVPLDYLLADLDSSDKEEG 380
T + E++P + L +L DL D E G
Sbjct: 381 KTLRQNVNIYVDRDHMPESDAEDEEIPKISLQEMLEDLKLEDAEGG 426
>gi|358254206|dbj|GAA54227.1| nonsense-mediated mRNA decay protein 3 [Clonorchis sinensis]
Length = 491
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/429 (23%), Positives = 172/429 (40%), Gaps = 124/429 (28%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK------------------- 56
CCKCG+++ N +N C+TCL +E+DIT+ +Q+ I CPK
Sbjct: 11 CCKCGVSIEPNEANTCITCLSTEIDITKHIQRQNTIVFCPKCERYLNPPSQWVTAAPESA 70
Query: 57 ---------------------------------IKLKLTVQKEVLEGVIVEQSDVVMSRN 83
I +++TV E+ G +VEQ D+ +
Sbjct: 71 ELLSMCIKRVKGLNKGLKVRGAKFIWTEPHSKRINVEVTVHGELPTGDMVEQ-DIPLEFV 129
Query: 84 ITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGI 129
+ D+W+A VQ+ ++I + A + IK++ GI
Sbjct: 130 VHSQQCSDCTRSAAKDYWNACVQVRQRVDHKRTLMHLEQIILRSKAHGDCSAIKQVSDGI 189
Query: 130 EFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI------ 183
+F+F RS AV FV F+ + P + + + L S + K+T SVE++ I
Sbjct: 190 DFYFGTRSQAVSFVNFLCKHAPCRYQTSQHLKSHDVHNNTYNYKFTFSVEVAGICKNDIV 249
Query: 184 -----SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVE 238
+ G LGP + KV+ +I L+DP T + +LD ++ SPF A+ +QLV
Sbjct: 250 CLSKAQSQRFGGLGPLCVVYKVSEAIHLIDPVTCQIYHLDGASFFASPFTAIAHQKQLVP 309
Query: 239 YIVLDVKV------------------------------------------ASTENDTILS 256
++V++++ A + D ++
Sbjct: 310 FVVVEIEEEPHGASKRLPSAPVGARLSKRHQPISVWLMRLNQQMTVSGADADSHEDGMIH 369
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQNDIELENY-KSLVPPDTIKI---KKSYKEKNQRKH 312
R HLG +L +GD G D+ N N E + ++ PD I + ++S ++ +
Sbjct: 370 ARCHLGRILHVGDTVFGLDIRNCNVNHPEFQKLEENNQVPDVILVLRPRQSAEDDGSSVN 429
Query: 313 RKPNPPKLK 321
R P+ K +
Sbjct: 430 RGPSKAKRR 438
>gi|47224989|emb|CAF97404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 549
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 155/362 (42%), Gaps = 99/362 (27%)
Query: 99 DHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVE 144
D W A VQ+ +LI KH + A IK++ GI+F++ + HA K V+
Sbjct: 213 DFWKAVVQVRQKTSHKKTFYYLEQLILKHKLHSNALNIKEIHDGIDFYYGLKQHAQKMVD 272
Query: 145 FVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGP 193
F+ VP +S+ ++L+S S K T SVEI + A +LGN+G
Sbjct: 273 FLQCTVPCRSKASQRLISHDIHSNTYNYKSTFSVEIVPVCKDNVVCLSPRLAQSLGNMGQ 332
Query: 194 FVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKV------- 246
+C +VT++I L+DP TL+ +D + YWR+PF +L RQL E+IV+D+ +
Sbjct: 333 VCVCVRVTSTIHLIDPATLQIAEVDGNTYWRNPFNSLCNPRQLEEFIVMDIDIIRDQKLG 392
Query: 247 ------------------ASTENDTI--LSTRTHLGHLLILGDYAIGYDLHEANQNDIEL 286
++E DT RT LGHLL +GD +G+D +N ND L
Sbjct: 393 AGAGTRSSRHTLAEVWVQKTSEMDTSQQYHCRTFLGHLLNIGDLVLGFDFANSNINDEHL 452
Query: 287 ENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEF 346
PD + R+ KPL ++ +Y++F
Sbjct: 453 NKMNPHHIPDV-------------RGRQVKSLGFKPLYVD------------PQRQYQDF 487
Query: 347 LRDL--------------------MASVTDKEDVPSVPLDYLLADLDSSDK--EEGDDSM 384
L DL + S TD + P + L +L +L +D EEG D +
Sbjct: 488 LEDLEEDEALRKNVNIFRDASKIPVESDTDDDGAPQISLAEMLEELSLTDATGEEGADML 547
Query: 385 IE 386
+
Sbjct: 548 TD 549
>gi|301097469|ref|XP_002897829.1| 60S ribosomal export protein nmd3, putative [Phytophthora infestans
T30-4]
gi|262106577|gb|EEY64629.1| 60S ribosomal export protein nmd3, putative [Phytophthora infestans
T30-4]
Length = 499
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 156/357 (43%), Gaps = 66/357 (18%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQL-------- 107
++KL+LT+Q+EV ++ Q+ + I V Q + W A VQ+
Sbjct: 105 RVKLRLTLQREVANHAVI-QNTCAFTFVIHSVKCPDCTKQYHNNTWKALVQIRQKAEHKR 163
Query: 108 ------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLV 161
+ I KH+A A I + G++F+F +S A +F+ F+ VP +S+ +L+
Sbjct: 164 TFLRLEQEILKHNAHQDAIGITTVKEGMDFYFGTKSTAERFIHFLTAHVPMRSKSSSKLI 223
Query: 162 SRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPF 210
S + + T SVE+S I A + GN+ +C + T + LLDP
Sbjct: 224 SENVHNATANLQLTYSVELSPICKDDLLVLPRKLAQSCGNISDVTLCARTTAMVHLLDPV 283
Query: 211 TLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK------------------------- 245
+ + L D+YW+ PF L TS +VE++VLDV+
Sbjct: 284 SGQKAELPTDRYWKLPFLPLATSSDMVEFVVLDVEPVDPRELRHVHVGPAATSGRGCKSK 343
Query: 246 --VASTE---------NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP 294
VA E NDT RTHLG +L GD GYDL A + K +
Sbjct: 344 FVVADVEVARESDFGVNDTTFHVRTHLGGVLSAGDTVKGYDLSTAIFGSSQTYTLKEEL- 402
Query: 295 PDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLM 351
PD + ++K Y +N +HRK + KLK L G A+ ++ +E E F + +
Sbjct: 403 PDVVLVRKVYPREN--RHRKGD-RKLKTLGASRRGKVSKAETARMEHEMEVFTEEFL 456
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
+SCC CG + +NA NMC +C+ +EVD+ E + + C
Sbjct: 3 ISCCMCGAQIEANAMNMCTSCIATEVDVAEGITTTCELVQC 43
>gi|66359062|ref|XP_626709.1| NMD3p like protein involved in nonsense mediated decay
[Cryptosporidium parvum Iowa II]
gi|46228252|gb|EAK89151.1| NMD3p like protein involved in nonsense mediated decay
[Cryptosporidium parvum Iowa II]
gi|323509203|dbj|BAJ77494.1| cgd3_1340 [Cryptosporidium parvum]
gi|323509989|dbj|BAJ77887.1| cgd3_1340 [Cryptosporidium parvum]
Length = 588
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 121/471 (25%), Positives = 189/471 (40%), Gaps = 126/471 (26%)
Query: 12 KTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
K ++CC CG+ N S MC+ C++SEVDITE + + A I+ C
Sbjct: 43 KYMNCCVCGVATEINPSRMCINCIRSEVDITEGISRQAIISFCRQCERFQKPPWVSCQLE 102
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--M 80
++K+K T+QKEV+ G I++QS VV
Sbjct: 103 SRELLALCLKKIKGLNTVRLVDASFIWTEPHSRRLKVKCTIQKEVMNGAIIQQSIVVEFF 162
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ C + F P W+ VQ+ +LI KH A + + I +
Sbjct: 163 MQAQQCDDCRRSFT---PHTWNTVVQVRQRVEHKRTFLYLEQLILKHGAHEKVSNIVEKP 219
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAH 186
G++F F +SHA K V+F+ ++ ++ +QL+S+ S K+T SVE+ I
Sbjct: 220 DGLDFQFQQKSHAQKLVDFITHYFASKVKNSRQLISQDLSSNTHNNKFTFSVELCPICKD 279
Query: 187 NL----GNL--------GPFVICTKVTNSIALLDPFTLRHCYLDADQYWR------SPFK 228
++ NL ++C K+TN I+L+DPFT R L ++YW+ S F
Sbjct: 280 DVVFIPKNLCISLLGGISSLLLCKKITNRISLIDPFTGREADLTKEKYWQYSGSNGSSFI 339
Query: 229 ALHTSRQLVEYIVLDVK----------VASTEN-----------------------DTIL 255
L + LV++ VL+V+ V S N D+ +
Sbjct: 340 PLLSRSSLVDFYVLNVERINTTGKHSAVGSDHNQGKNNKVCIAEVEVCRESDLGIPDSSV 399
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP-----PDTIKIKKSY-KEKNQ 309
THLG L GD+ GYD N + +E+ V D I +KK + K +N
Sbjct: 400 IVTTHLGAYLNSGDWVSGYDFRTLNNFGV-VEDISEFVQWRERNHDVILVKKVFRKNQNN 458
Query: 310 RKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDV 360
P L+ L E + N + E+F +L + DV
Sbjct: 459 LDSSIQRPWVLQRLPKEQLAFDNANSKSSFNQDLEQFKAELEEDSEMRRDV 509
>gi|167395081|ref|XP_001741218.1| nonsense-mediated mRNA decay protein [Entamoeba dispar SAW760]
gi|165894302|gb|EDR22337.1| nonsense-mediated mRNA decay protein, putative [Entamoeba dispar
SAW760]
Length = 411
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 159/375 (42%), Gaps = 105/375 (28%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK------------------- 56
CC CG + N S+MC CL +DITE + K I C +
Sbjct: 24 CCVCGALIEVNPSSMCANCLHKTIDITEGIPKQITIDQCKRCKKFLAGTTWFYCEPESRE 83
Query: 57 -------------------------------IKLKLTVQKEVLEGVIVEQSDVVMSRNIT 85
+K+KLT++KEV + +++Q N+
Sbjct: 84 LMTYLIKRIKGLNKLKLINASYIWTEEHSKRLKIKLTIEKEVFKNTVIQQD-----FNVE 138
Query: 86 CVNLVPGFMQT-----GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ +V GF + W + VQL + I K +A +AT I++M
Sbjct: 139 FI-IVNGFCDNCHKAEAKNTWQSVVQLRQHAEHKKSILTLEQEILKANAHQKATDIQEMP 197
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++ FF HA KF++F+ +VP + + K+LVS+ K + SVE+ IS
Sbjct: 198 DGMDIFFQSVDHAKKFIDFLQTLVPLRYQQTKKLVSQDDHKNTYDFKVSFSVEVVPISRQ 257
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
+ LG +GP ++CT+V ++ L+D L A Q+++ PF AL S+
Sbjct: 258 DLVFLPKVNVNQLGGVGPLMVCTQVAGTLHLVDVLKGTEVELYAHQFFQHPFDALTNSKN 317
Query: 236 LVEYIVLDV---------------KVASTEN----DTILSTRTHLGHLLILGDYAIGYDL 276
LVEY V++V ++ +E+ + L +T G+ + G+ A+GYDL
Sbjct: 318 LVEYYVVEVTKIGKPVGQYQLADCQIIKSEDFGVTEDYLYVKTVFGNTIREGETALGYDL 377
Query: 277 HEANQNDIELENYKS 291
N N+ E+Y+
Sbjct: 378 VNLNANNDNFESYQQ 392
>gi|67596277|ref|XP_666068.1| Upf1p-interacting protein; Nmd3p [Cryptosporidium hominis TU502]
gi|54656979|gb|EAL35836.1| Upf1p-interacting protein; Nmd3p [Cryptosporidium hominis]
Length = 588
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 120/471 (25%), Positives = 189/471 (40%), Gaps = 126/471 (26%)
Query: 12 KTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
K ++CC CG+ N S MC+ C++SEVDITE + + A I+ C
Sbjct: 43 KYMNCCVCGVATEINPSRMCINCIRSEVDITEGISRQAIISFCRQCERFQKPPWVSCQLE 102
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--M 80
++K+K T+QKEV+ G I++QS VV
Sbjct: 103 SRELLALCLKKIKGLNTVRLVDASFIWTEPHSRRLKVKCTIQKEVMNGAIIQQSIVVEFF 162
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ C + F P W+ VQ+ +LI KH A + + I +
Sbjct: 163 MQAQQCDDCRRSFT---PHTWNTVVQVRQRVEHKRTFLYLEQLILKHGAHEKVSNIVEKP 219
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAH 186
G++F F +SHA K V+F+ ++ ++ +QL+S+ S K+T SVE+ I
Sbjct: 220 DGLDFQFQQKSHAQKLVDFITHYFASKVKNSRQLISQDLSSNTHNNKFTFSVELCPICKD 279
Query: 187 NL----GNL--------GPFVICTKVTNSIALLDPFTLRHCYLDADQYWR------SPFK 228
++ NL ++C K+TN I+L+DPFT R L ++YW+ S F
Sbjct: 280 DVVFIPKNLCISLLGGISSLLLCKKITNRISLIDPFTGREADLTKEKYWQYSGSNGSSFI 339
Query: 229 ALHTSRQLVEYIVLDVK----------VASTEN-----------------------DTIL 255
L + LV++ VL+V+ + S N D+ +
Sbjct: 340 PLLSRSSLVDFYVLNVERINTTGKHSAIGSDHNQGRNNKVCIAEVEVCRESDLGIPDSSV 399
Query: 256 STRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP-----PDTIKIKKSY-KEKNQ 309
THLG L GD+ GYD N + +E+ V D I +KK + K +N
Sbjct: 400 IVTTHLGAYLNSGDWVSGYDFRTLNNFGV-VEDISEFVQWRERNHDVILVKKVFRKNQNN 458
Query: 310 RKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDV 360
P L+ L E + N + E+F +L + DV
Sbjct: 459 LDSSIQRPWVLQRLPKEQLAFDNANSKSSFNQDLEQFKAELEEDSEMRRDV 509
>gi|67462854|ref|XP_648084.1| Nonsense-mediated mRNA decay protein 3 [Entamoeba histolytica
HM-1:IMSS]
gi|67479319|ref|XP_655041.1| nonsense-mediated mRNA decay protein [Entamoeba histolytica
HM-1:IMSS]
gi|56464024|gb|EAL42698.1| Nonsense-mediated mRNA decay protein 3, putative [Entamoeba
histolytica HM-1:IMSS]
gi|56472145|gb|EAL49654.1| nonsense-mediated mRNA decay protein, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 411
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 158/375 (42%), Gaps = 105/375 (28%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK------------------- 56
CC CG + N S+MC CL +DITE + K I C +
Sbjct: 24 CCVCGALIEVNPSSMCANCLHKTIDITEGIPKQITIDQCKRCKKFLAGTTWFYCEPESRE 83
Query: 57 -------------------------------IKLKLTVQKEVLEGVIVEQSDVVMSRNIT 85
+K+KLTV+KEV + +++Q N+
Sbjct: 84 LMTYLIKRVKGLNKLKLINASYIWTEEHSKRLKIKLTVEKEVFKNTVIQQD-----FNVE 138
Query: 86 CVNLVPGFMQT-----GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ +V GF + W + VQL + I K +A AT I++M
Sbjct: 139 FI-IVNGFCDNCHKAEAKNTWQSVVQLRQHAEHKKSILTLEQEILKANAHQNATDIQEMP 197
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++ FF HA KF++F+ +VP + + K+LVS+ K + SVE+ IS
Sbjct: 198 DGMDIFFQSVDHAKKFIDFLQTLVPLRYQQTKKLVSQDDHKNTYDFKVSFSVEVVPISRQ 257
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
+ LG +GP ++CT+V ++ L+D L A Q+++ PF AL S+
Sbjct: 258 DLVFLPKVNVNQLGGVGPLMVCTQVAGTLHLVDVLKGTEVELYAHQFFQHPFDALTNSKN 317
Query: 236 LVEYIVLDV---------------KVASTEN----DTILSTRTHLGHLLILGDYAIGYDL 276
LVEY V++V ++ +E+ + L +T G+ + G+ A+GYDL
Sbjct: 318 LVEYYVVEVTKIGKPVGQYQLADCQIIKSEDFGVTEDYLYVKTIFGNTIREGETALGYDL 377
Query: 277 HEANQNDIELENYKS 291
N N+ E+Y+
Sbjct: 378 VNLNANNDNFESYQQ 392
>gi|440300468|gb|ELP92937.1| nonsense-mediated mRNA decay protein, putative [Entamoeba invadens
IP1]
Length = 424
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 156/378 (41%), Gaps = 98/378 (25%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------- 55
A + + CC CG + N S MC C+++ VDITE + K I+ C
Sbjct: 32 AQKAEMLCCVCGALIEVNPSCMCANCIQTAVDITEGIPKQVTISQCKGCKKFLAGTTWFY 91
Query: 56 -------------------------------------KIKLKLTVQKEVLEGVIVEQSDV 78
++K+KLTV+KEV + +++Q
Sbjct: 92 CEPESKELMTYLVKRVKGVNKLKLLNASYIWTEEHSKRLKIKLTVEKEVFKNTLIQQDFT 151
Query: 79 V--MSRNITCVNLVPGFMQTGPDHWDAAVQLE--------------LIQKHDAPARATKI 122
V + N C N + W + VQL I K A AT +
Sbjct: 152 VEFIVVNAFCDNC---HKVEAKNTWQSVVQLRQHSEHKKSIATLETAILKAKAHQNATDV 208
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
K+M G++ FFS HA KFVEF+ +VP + + K+LVS+ K + SVE+
Sbjct: 209 KEMPDGMDVFFSSVDHAKKFVEFLQTLVPLRYQQSKKLVSQDEHKNTYDFKVSFSVEVVP 268
Query: 183 ISAHN-----------LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
IS + LG +GP ++CT+V +I L D L A Q+++ PFK L
Sbjct: 269 ISRLDLVFLPKVVVAMLGGVGPLMVCTQVAGTIHLRDVIKGTEVELYAHQFFQHPFKTLC 328
Query: 232 TSRQLVEYIVL--------------DVKVASTEN----DTILSTRTHLGHLLILGDYAIG 273
SR+ Y ++ D ++ +E+ + + +T G L GD A G
Sbjct: 329 DSRRFSHYYIVELTRDFQNRNNPISDAQIIRSEDFGVTEDYIYVKTVFGDKLKEGDNAYG 388
Query: 274 YDLHEANQNDIELENYKS 291
YDL N ND E E++++
Sbjct: 389 YDLININPNDDEFEDWQA 406
>gi|167383479|ref|XP_001736553.1| nonsense-mediated mRNA decay protein [Entamoeba dispar SAW760]
gi|165901019|gb|EDR27203.1| nonsense-mediated mRNA decay protein, putative [Entamoeba dispar
SAW760]
Length = 411
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 97/375 (25%), Positives = 158/375 (42%), Gaps = 105/375 (28%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK------------------- 56
CC CG + N S+MC CL +DITE + K I C +
Sbjct: 24 CCVCGALIEVNPSSMCANCLHKTIDITEGIPKQITIDQCKRCKKFLAGTTWFYCEPESRE 83
Query: 57 -------------------------------IKLKLTVQKEVLEGVIVEQSDVVMSRNIT 85
+K+KLT++KEV + +++Q N+
Sbjct: 84 LMTYLIKRIKGLNKLKLINASYIWTEEHSKRLKIKLTIEKEVFKNTVIQQD-----FNVE 138
Query: 86 CVNLVPGFMQT-----GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ +V GF + W + VQL + I K +A AT I++M
Sbjct: 139 FI-IVNGFCDNCHKAEAKNTWQSVVQLRQHAEHKKSILTLEQEILKANAHQNATDIQEMP 197
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-- 184
G++ FF HA KF++F+ +VP + + K+LVS+ K + SVE+ IS
Sbjct: 198 DGMDIFFQSVDHAKKFIDFLQTLVPLRYQQTKKLVSQDDHKNTYDFKVSFSVEVVPISRQ 257
Query: 185 ---------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
+ LG +GP ++CT+V ++ L+D L A Q+++ PF AL S+
Sbjct: 258 DLVFLPKVNVNQLGGVGPLMVCTQVAGTLHLVDVLKGTEVELYAHQFFQHPFDALTNSKN 317
Query: 236 LVEYIVLDV---------------KVASTEN----DTILSTRTHLGHLLILGDYAIGYDL 276
LVEY V++V ++ +E+ + L +T G+ + G+ A+GYDL
Sbjct: 318 LVEYYVVEVTKIGKPVGQYQLADCQIIKSEDFGVTEDYLYVKTVFGNTIREGETALGYDL 377
Query: 277 HEANQNDIELENYKS 291
N N+ E+Y+
Sbjct: 378 VNLNANNDNFESYQQ 392
>gi|325181974|emb|CCA16428.1| 60S ribosomal export protein nmd3 putative [Albugo laibachii Nc14]
Length = 403
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/399 (25%), Positives = 162/399 (40%), Gaps = 112/399 (28%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIK-------------- 58
T+ CC CG + NA NMC C S+VDI E++ + C + K
Sbjct: 2 TIPCCLCGSQIEPNALNMCSICTASKVDIAENIATEHELKQCAQCKRYQCKTGCNTSWVL 61
Query: 59 ------------LKLT----------------------------VQKEVLEGVIVEQSDV 78
LKL +QK+ ++ V + +
Sbjct: 62 FELESRELLGFCLKLVSNLKKYKIIDANFVWTEPHSKRIKLNIIIQKDFVQHAPVRATKL 121
Query: 79 V--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
+ + +NI C + F W A VQ+ + I K A A I
Sbjct: 122 LTFVIQNIKCADCSKDFHDKS---WRAVVQIRQKANPRRTLARLEQEILKSKAHEEAMGI 178
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
+ + G++ +FS ++ +F++F+ P + + +++S ++ K + T SV++S
Sbjct: 179 QSVKEGMDLYFSSKAPVERFLQFIAAHAPTRIKSSSKMISEDVRNGTAKIQATWSVQLSP 238
Query: 183 I-----------SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I +A +LGN+ V+CTK T++I +LDPFT + + D+YW+ PF++L
Sbjct: 239 ICKDDLLLLPARTAQSLGNISRLVLCTKTTSAIDVLDPFTGQKAEISGDKYWKLPFQSLD 298
Query: 232 TSRQLVEYIVL------------------------DVKVASTE----NDTILSTRTHLGH 263
TS + EYIVL DV+VA T ND +THLG
Sbjct: 299 TSPHMEEYIVLDNEPLIPKHKSGGLSETDRDFVLADVEVARTNDFGVNDITHHVQTHLGA 358
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKK 302
+L G+ GYDL N + K PD + ++K
Sbjct: 359 ILSAGNSVRGYDLQATNFGARYTQGVKEEDLPDIVLVRK 397
>gi|71033415|ref|XP_766349.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353306|gb|EAN34066.1| hypothetical protein, conserved [Theileria parva]
Length = 491
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/401 (24%), Positives = 170/401 (42%), Gaps = 101/401 (25%)
Query: 14 VSCCKCG-ITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------ 54
+ C CG +S MC TCL VD++E++ H I C
Sbjct: 19 MQCFLCGEFVSAPTSSRMCSTCLTKSVDLSENVSTHCTILQCVTCTKFYHDRWLSCELES 78
Query: 55 -------------------------------PKIKLKLTVQKEVLEGVIVEQS-----DV 78
K+K+ +TVQKEV +VEQS +
Sbjct: 79 KELLSVCLKKIKGIDLMKIVDASFKWTEPHSKKLKINVTVQKEVENNCVVEQSLSIDFTI 138
Query: 79 VMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
V ++ +C L P W A VQ+ ++I KH+A I
Sbjct: 139 VSTQCASCKQLY------TPHTWKALVQIRQKTKDKKHILLLEQIILKHNAHENVLNILS 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+G + FS R+ A KF +FV + + +Q ++ K+LV++ + KYT V + I
Sbjct: 193 RRNGFDLHFSSRNDAQKFADFVSDKIVSQIKNSKKLVTQDVNNNKYNYKYTLHVSLVPIC 252
Query: 185 AHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDA-DQYWRSPFKALHT 232
+L G + PF++ +T++I+L+DPFTLR + +++ F L+
Sbjct: 253 TDDLVFLSPKVSSIYGGISPFLLVVNLTSTISLMDPFTLRRLEVSMFNKFNLCEFIVLNI 312
Query: 233 SRQLV------EYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIEL 286
+ +Y ++DV++ + + I+ T++HLG +L +G +GYD+ N N +
Sbjct: 313 EKDYTRKSKNQQYELVDVEIMPSNSSKIIYTKSHLGKILTVGGTYLGYDIKRINMNGLSE 372
Query: 287 E--NYKSLVPPDTIKIKKS--YKEKN----QRKHRKPNPPK 319
+ N + +P D I ++K+ Y K+ +R RK N K
Sbjct: 373 QETNISNRIPFDVILVRKAKKYSSKHNWVLKRMFRKKNNQK 413
>gi|256085252|ref|XP_002578836.1| nonsense-mediated mRNA decay protein [Schistosoma mansoni]
gi|353228762|emb|CCD74933.1| putative nonsense-mediated mRNA decay protein [Schistosoma mansoni]
Length = 379
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 139/312 (44%), Gaps = 76/312 (24%)
Query: 23 MVSNASNMCVTCLKSEVDITESLQKHANITPCPKIK-------------------LKLTV 63
M SN +NMC TCL SE DI E + + +T CPK + L L +
Sbjct: 1 MYSNTANMCFTCLSSEADIAEHIDRQNTVTFCPKCERYLNPPSNWVSAEPESPELLSLCI 60
Query: 64 QK--EVLEGVIVEQSDVVM----SRNITCVNLVPGFMQTG-------------------- 97
+K + +G+ V + + SR I+ V G +QTG
Sbjct: 61 KKIRGLKKGLEVRNARFIWTEPHSRRISIEITVQGTLQTGDRVEQQIPIDFTVHTQQCTS 120
Query: 98 ------PDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRS 137
D W+A VQ+ ++I + A + IK++ GI+FFFS RS
Sbjct: 121 CTRNAAKDFWNACVQVRQKVDHKKTLLHLEQVILRSGAHKACSNIKQVSGGIDFFFSTRS 180
Query: 138 HAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI-----------SAH 186
AV FV F+ + P + + + L S + KYT SVEI+ + +
Sbjct: 181 QAVTFVNFLSKRSPCRYQTAQHLKSHDVNNNTYNYKYTFSVEIAPVCKNDIVCLSRAQSQ 240
Query: 187 NLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKV 246
LG + + +KVT++I L+DP T + CY+D+ Y+ SPF ++ T + ++VL+++
Sbjct: 241 KLGGISQLCVVSKVTDAIHLIDPLTCQVCYVDSKAYFSSPFMSITTQKHFSPFVVLEIEE 300
Query: 247 ASTENDTILSTR 258
++ + S+R
Sbjct: 301 QRDDSSQMNSSR 312
>gi|397630323|gb|EJK69725.1| hypothetical protein THAOC_08991 [Thalassiosira oceanica]
Length = 511
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 179/395 (45%), Gaps = 75/395 (18%)
Query: 56 KIKLKLTVQKEV-LEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL----- 107
++K++LT+Q+EV G I++QS VV + RN CV F Q W + VQ+
Sbjct: 39 RLKIRLTIQREVSAGGTILQQSFVVTFVVRNQQCVECQAAFRQG---SWKSLVQVRQRVG 95
Query: 108 ---------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEK 158
+LI KH A I+ G++F+F + A +F+ F+ +VVP + + K
Sbjct: 96 HKRTFLYLEQLILKHSAHRGCLSIETFKDGMDFYFPDKGKAARFISFLEDVVPIKVKSSK 155
Query: 159 QLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALL 207
+L+S KS KYT VEI + A ++GN+ V+ ++N I ++
Sbjct: 156 KLISTDDKSNVSNYKYTNLVEICTLCKDDLLFLPKRLARHIGNISRLVLVKNISNVIQVI 215
Query: 208 DPFTLRHCYLDADQYWRSPFKALHTS--RQLVEYIVLD---------------------- 243
DP + + ++++ YWR F+ + T+ +L Y++L
Sbjct: 216 DPLSGQTANIESEAYWRDTFRPVVTAARTRLSRYVILGKDPVFLERNVSKRGVSKKQRSK 275
Query: 244 --VKVASTE-----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYK-SLVPP 295
+ A+ E ND+ + R+HLG+L+ GD +GYDL + + E E+ + S P
Sbjct: 276 LALVTAARESDLGVNDSQIEERSHLGYLMKSGDVCLGYDLKDCQLVEDEAEDMRTSGKFP 335
Query: 296 DTIKIKKSY-----KEKNQRKHRKPNPPKLKPLEMEVD---GSKCGADREKVNNEYEEFL 347
D + ++K Y E + K R +L E D G + D E + + E+FL
Sbjct: 336 DVVFVRKLYGGVATGELDAAKKRIFTLQRLDVKRGEEDKQRGKRGKKDAEMEDMDKEDFL 395
Query: 348 RDLMASVTDKEDVPSVPLDYLLADLDSSDKEEGDD 382
++L A DKE V + Y S D GDD
Sbjct: 396 QELEA---DKEMRTRVNI-YKAEGAKSRDLVYGDD 426
>gi|297739635|emb|CBI29817.3| unnamed protein product [Vitis vinifera]
Length = 281
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 98/212 (46%), Gaps = 72/212 (33%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M + AG+F V T+ CCKCGI M NA+NMCV CL++EVDITE LQKHA + CP
Sbjct: 33 MTEEAGMFRVHHTIGSVLCCKCGIPMTPNAANMCVKCLRTEVDITEGLQKHATLVHCPEC 92
Query: 56 -------------------------------------------------KIKLKLTVQKE 66
+IK+KL VQKE
Sbjct: 93 DRYFRPPKTWIEPQLESKELLTLCLKTLKNLNQVRLIHAEFIWTEPHSKRIKVKLRVQKE 152
Query: 67 VLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELI 110
VL G I+EQ+ +V + + C + +Q PD W A+VQ+ +LI
Sbjct: 153 VLNGAILEQAYIVEYVQQEHMCESC--SRVQANPDQWVASVQVRQHVPHRRTLFYLEQLI 210
Query: 111 QKHDAPARATKIKKMDHGIEFFFSGRSHAVKF 142
HDA A KIK M+ GI+FFF+ SH KF
Sbjct: 211 LMHDAARCAKKIKPMNQGIDFFFANWSHGKKF 242
>gi|156086916|ref|XP_001610865.1| nonsense-mediated mRNA decay protein [Babesia bovis T2Bo]
gi|154798118|gb|EDO07297.1| nonsense-mediated mRNA decay protein, putative [Babesia bovis]
Length = 549
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/416 (22%), Positives = 168/416 (40%), Gaps = 130/416 (31%)
Query: 16 CCKCG-ITMVSNASNMCVTCLKSEVDITESLQKHANITPC-------------------- 54
CC CG + AS MC C+ V++ + + H I C
Sbjct: 21 CCLCGDVVPKPTASRMCHLCITKNVNLAQEVTTHTTILQCGTCKMFFHDRWLKCDLESKE 80
Query: 55 -----------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSRNIT 85
++K+K+ VQKEV +VEQS V++ +I
Sbjct: 81 LLSICLKKAKGLENMKIINAAFSWTEPHSKQLKVKVCVQKEVDSNFVVEQS-FVITFSIK 139
Query: 86 CVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEF 131
P W A VQ+ ++I KH+A T I +G +
Sbjct: 140 SSQCDHCKRMYTPHTWKAMVQIRQKTKDKRHILMLEQIIIKHNAHENVTNILSRPNGFDL 199
Query: 132 FFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL--- 188
F ++ A KF +FV + + +Q R+ K+L+++ + + KYT V++ I A ++
Sbjct: 200 HFQSKTCAQKFADFVSDKIVSQVRNSKKLITQDSVNNKWDYKYTLQVQLIPICADDMVRA 259
Query: 189 -------------------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
G + PF++C +T +I+L+DPFTLR + D++W++PF +
Sbjct: 260 NNDVNISQVFLPPKVASINGGISPFLLCVNLTTTISLIDPFTLRTLDISNDKFWKNPFTS 319
Query: 230 ----------------------------------LHTS--RQLVEYI-----VLDVKVAS 248
+HT +L E + ++DV++ +
Sbjct: 320 RKCWKQQTDAQQFSTSSIFATLLFSILRKIGAVSIHTQYMSRLCEMVNIRCRLVDVELMA 379
Query: 249 TENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDI--ELENYKSLVPPDTIKIKK 302
T++ T++HLG++L +GD GYD+ + N N + E + + +P D I ++K
Sbjct: 380 VNASTVIYTKSHLGNILTVGDTFSGYDIRKINLNGLAEEQTDISNKIPFDVILVRK 435
>gi|145547836|ref|XP_001459599.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427425|emb|CAK92202.1| unnamed protein product [Paramecium tetraurelia]
Length = 537
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/349 (27%), Positives = 167/349 (47%), Gaps = 66/349 (18%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDV--VMSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
+IK+KLT+QKEVL ++Q+ + + C + F P W AAVQ+
Sbjct: 105 RIKVKLTIQKEVLNNTNMQQTFICEFVEHYQQCEDCKKEFT---PHTWGAAVQVRQRVDH 161
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+L+ K++A + KI+++D G++FF+ RSHA + VE++ ++P + + KQ
Sbjct: 162 KKTFFYLEQLLLKYNANDKVLKIEQVDDGLDFFYKSRSHANRLVEYLSTILPIRVKQSKQ 221
Query: 160 LVSRGTKSRNCKCKYTCSVEISAISAHN-----------LGNLGPFVICTKVTNSIALLD 208
LVS S KY +V++ + + LG +G +C K+T + L+D
Sbjct: 222 LVSHDASSNLFNYKYVYAVDLPKVCKDDLVILPQKLCKELGGVGRVQLCYKLTTIVHLID 281
Query: 209 PFTLRHCYLDADQY--WRSPFKALHTSRQLVEYIVLDVKVASTEN-------DTIL---- 255
P +++ L + + + + + + E+ V+DV+ T N TI+
Sbjct: 282 PLSMKCSDLSIEAFSLYENEIEVYNLKTHQHEFTVVDVERIHTRNLNESYISITIIRESN 341
Query: 256 -----STRTHLGHLLILGDYAIGYDLHEANQNDIE-LENYKSLVPPDTIKIKKSYKEKNQ 309
+ ++HLG +L G AIGYDL + +E + NY P+ I +K+
Sbjct: 342 NYVPVTVKSHLGDILKTGQVAIGYDLTQLTIESLEDISNY-----PECILVKRQI----N 392
Query: 310 RKHRKPNPPKLKPLE----MEVDGSKCGADREKVNN----EYEEFLRDL 350
++ RK KLK LE ME +G + +++K N ++EEFL D+
Sbjct: 393 KEARKQRIFKLKRLEAQNVMEEEGGERKRNQQKKQNDQDEQFEEFLDDV 441
>gi|260788891|ref|XP_002589482.1| hypothetical protein BRAFLDRAFT_125192 [Branchiostoma floridae]
gi|229274660|gb|EEN45493.1| hypothetical protein BRAFLDRAFT_125192 [Branchiostoma floridae]
Length = 379
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 132/293 (45%), Gaps = 71/293 (24%)
Query: 158 KQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIAL 206
++L+S KS K T SVEI + A LGNL +C +V+ ++ +
Sbjct: 94 EKLLSHDVKSNTYNYKSTFSVEIVPVCKDNIVCLPPKLAQQLGNLNQICVCLRVSTTVHI 153
Query: 207 LDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVL------------------------ 242
+DP TL+ + A +WR+PF++L RQL EY+VL
Sbjct: 154 IDPSTLQIADVTAPVFWRTPFQSLCEPRQLTEYMVLEVEPIRHHERVHVAGEGAKSHKHL 213
Query: 243 --DVKVASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPD 296
DV VA + ND RTHLGHLL GD G+DL AN N+ L+ K+ PD
Sbjct: 214 LADVWVARSSDLGMNDNQYHCRTHLGHLLRAGDLVHGFDLSNANVNNDFLDKMKADRLPD 273
Query: 297 TIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL------ 350
+ +KK + + ++HR+ N KLK L E++ D + + +Y EFL DL
Sbjct: 274 VVLVKKVFDK--SKRHRRRN-WKLKRLAKELE----TMDTDSMERDYNEFLEDLEEDPLY 326
Query: 351 --------------MASVTDKEDVPSVPLDYLLADLDSSDKE---EGDDSMIE 386
+ S TD +D P + L +L DL S+ EG D M +
Sbjct: 327 RKDVNIYRDAEKLAVESDTDDDDAPRISLQEMLEDLHISEDATGGEGADMMTD 379
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 9/72 (12%)
Query: 6 GIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITES----LQKHANITPCPKIKLKL 61
G+ + + CC+CG+ + N +NMCV CL+++V + ++ + H+ +IKLKL
Sbjct: 9 GVSFTQGNILCCQCGVPIQPNPANMCVACLRTQVHLIDAGFVWTEPHSK-----RIKLKL 63
Query: 62 TVQKEVLEGVIV 73
T+QKEV+ G I+
Sbjct: 64 TIQKEVVNGAIL 75
>gi|357494227|ref|XP_003617402.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355518737|gb|AET00361.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 341
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 104/243 (42%), Gaps = 62/243 (25%)
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
I +D G F F+ S A F +GE+VP +S ++ R + Y SVEI
Sbjct: 44 IYDVDQGFSFCFNITSCAWHFARLIGEIVPVKSAW-AMIIPRTER-------YLFSVEIV 95
Query: 182 AISAHNL--------GNLGP-FVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
I +L +LGP VICT+V + LLDPFTL HC+LDA QYW++PF
Sbjct: 96 PICCGDLIFLPPNVVASLGPNIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFN 155
Query: 233 SRQLVEYIVLDV--------------------------------------------KVAS 248
QLVEY+VLD+ +V
Sbjct: 156 RTQLVEYVVLDIVLLQDNQQDNQDEEEEVVEENKEKKDAAAAAAAKKYRLADAVVARVKD 215
Query: 249 T-ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEK 307
T NDT RTHLG +L GD+A+GYDL N + +P + K SY E
Sbjct: 216 TGNNDTTFQIRTHLGRILKPGDHALGYDLSGGVGEGGADTNTNNNLPAAILISKISYAEV 275
Query: 308 NQR 310
N R
Sbjct: 276 NGR 278
>gi|388508834|gb|AFK42483.1| unknown [Medicago truncatula]
Length = 342
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 105/246 (42%), Gaps = 67/246 (27%)
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
I +D G F F+ S A F +G++VP +S + ++ R + Y SVEI
Sbjct: 44 IYDVDQGFSFCFNIISCAWYFATLIGDIVPVKS-NWAMIIPRTER-------YLFSVEIV 95
Query: 182 AISAHNL------------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
I +L N+GP VICT+V + LLDPFTL HC+LDA QYW++PF
Sbjct: 96 PICCGDLIFLPPNVVASLGPNIGPIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTH 155
Query: 230 LHTSRQLVEYIVLDV--------------------------------------------K 245
QLVEY+VLD+ +
Sbjct: 156 SFNRTQLVEYVVLDIVLLQDNQQDNQDEEEEVVEENREKKYAAAAAAAKKYRLADAVVAR 215
Query: 246 VAST-ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
V T NDT RTHLG +L GD+A+GYDL N + +P + K SY
Sbjct: 216 VKDTGNNDTTFQIRTHLGRILKPGDHALGYDLSGGEGG--ADTNTNNNLPAAILISKISY 273
Query: 305 KEKNQR 310
E N R
Sbjct: 274 AEVNGR 279
>gi|357493955|ref|XP_003617266.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355518601|gb|AET00225.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 342
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 105/246 (42%), Gaps = 67/246 (27%)
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
I +D G F F+ S A F +G++VP +S + ++ R + Y SVEI
Sbjct: 44 IYDVDQGFSFCFNIISCAWYFATLIGDIVPVKS-NWAMIIPRTER-------YLFSVEIV 95
Query: 182 AISAHNL------------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
I +L N+GP VICT+V + LLDPFTL HC+LDA QYW++PF
Sbjct: 96 PICCGDLIFLPPNVVASLGPNIGPIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTH 155
Query: 230 LHTSRQLVEYIVLDV--------------------------------------------K 245
QLVEY+VLD+ +
Sbjct: 156 SFNRTQLVEYVVLDIVLLQDNQQDNQDEEEEVVEENREKKYAAAAAAAKKYRLADAVVAR 215
Query: 246 VAST-ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
V T NDT RTHLG +L GD+A+GYDL N + +P + K SY
Sbjct: 216 VKDTGNNDTTFQIRTHLGRILKPGDHALGYDLSGGEGG--ADTNTNNNLPAAILISKISY 273
Query: 305 KEKNQR 310
E N R
Sbjct: 274 AEVNGR 279
>gi|219127952|ref|XP_002184189.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404420|gb|EEC44367.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 530
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/363 (26%), Positives = 159/363 (43%), Gaps = 69/363 (19%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVM--SRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
++K++LTVQ+EV G I++QS V+ RN C+ F Q W + VQ+
Sbjct: 116 RLKVRLTVQREVESGTILQQSFTVVFVVRNQQCIECQAEFRQGS---WKSLVQVRQRVSH 172
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI KH A I+ G++F+F + A +F+ F+ V P + + K+
Sbjct: 173 KRTFLYLEQLILKHGAHRGCLSIETFRDGMDFYFPDKGKAARFISFLENVCPIKVKTSKK 232
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
L+ KS KYT VEI + A LG++ V+ +TN I L+D
Sbjct: 233 LIGTDDKSNISNYKYTSLVEICPLCKDDLLHLPIKMARKLGSISRLVLVKNITNVIHLID 292
Query: 209 PFTLRHCYLDADQYWRSPFKALHTS--RQLVEYIVLD--------------------VKV 246
P T + + ++ YW P + L T+ ++ YIVL K+
Sbjct: 293 PLTGQMAQMSSEAYWCEPIRPLITAARSRMTRYIVLGKEPVFLRTNVSKRMTNRKQRTKL 352
Query: 247 A----STENDTILST-----RTHLGHLLILGDYAIGYDLHEANQNDIELENYKS-LVPPD 296
A + E+D ++ ++H+G+L+ GD +GYDL E E E+ +S L P+
Sbjct: 353 ACVTLAREDDMGVNNHQYEEQSHMGYLMKAGDVCVGYDLKETQFVSDEAESLRSELKLPN 412
Query: 297 TIKIKKSY-----KEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEY--EEFLRD 349
+ ++K Y E N K R +L E + G +E E+FL++
Sbjct: 413 VVILRKLYGAVAAGETNAVKRRMWRLQRLDVAVAETAATGKGVKNAAEADEMDEEDFLQE 472
Query: 350 LMA 352
+ A
Sbjct: 473 VEA 475
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
+V CC CG+ + NA+N C TCL S DIT + A + C
Sbjct: 16 SVLCCLCGVPISPNAANTCATCLASSSDITRGISTEATVHQC 57
>gi|308161032|gb|EFO63494.1| Nonsense-mediated mRNA decay protein 3 [Giardia lamblia P15]
Length = 491
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 109/463 (23%), Positives = 181/463 (39%), Gaps = 119/463 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC CG+ + N ++MC+ CL++ V+ITE + + C
Sbjct: 9 ILCCSCGVPIEPNPTSMCLPCLRARVNITEGIDTEQTLIHCHQCNRYNVGNDKYVAAELE 68
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSR 82
+IK++L +Q EV +G +++Q + +
Sbjct: 69 SPQLLGICLKKIRGLQHVRVVDAGFIWTEEHSKRIKVRLLIQAEVQQGAVLQQEHIC-TF 127
Query: 83 NITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHG 128
I VP W VQ+ ++I ++ A + IK+ HG
Sbjct: 128 TIVSTLCVPCQYTHTEHTWSTRVQVRQTVNHKRTFLYLEQIILRNRAKLNISNIKEYPHG 187
Query: 129 IEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA--- 185
++F+F+ RS A +FV+ + VP + ++L+S KS +Y+ EI+ +
Sbjct: 188 LDFYFTSRSDAGRFVDLLHSSVPGRHSESQKLISADLKSNTATIEYSIMFEIAQLCKDDL 247
Query: 186 --------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLV 237
+ LG LGP I +KV + I +DP T + L A QY+ PF A R V
Sbjct: 248 VYLPRRFYNQLGGLGPLCIVSKVNSRIHFVDPLTGQMGSLTASQYFEKPFTAFRDRRHKV 307
Query: 238 EYIVLDVKVAST-----------------END----TILSTRTHLGHLLILGDYAIGYDL 276
E IVL + ++ END + T+T+L L G Y L
Sbjct: 308 EGIVLVSEEENSNEKRTQGSPIAYVELQRENDMYEGVTVHTKTYLSSLCKPGRSVAVYSL 367
Query: 277 HEANQNDIELENYKSLVPPDT---IKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCG 333
++++ + Y + P DT +++ K K ++H K KL E E +
Sbjct: 368 -----DNLDFQAY-GITPSDTYLNLRVIIVGKWKGTKQHSK---HKLARYETEEGVAIVN 418
Query: 334 ADREKVNNEYEEFLRDLMASVTDKEDVPSVPLDYLLADLDSSD 376
A + +N EE D D+E LD L+ +L D
Sbjct: 419 APDDDINALLEEMYDD---ETRDRE------LDALMNNLGQLD 452
>gi|340503733|gb|EGR30265.1| hypothetical protein IMG5_136460 [Ichthyophthirius multifiliis]
Length = 618
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 108/460 (23%), Positives = 186/460 (40%), Gaps = 129/460 (28%)
Query: 10 VRKTVSCCKCGITM--VSNASNMCVTCLKSEVDITESLQKHANITPCP------------ 55
+ + CC CGI+ ++MC+ C+ S+ DIT + K I C
Sbjct: 25 ITANILCCICGISFNPSETKTSMCIQCVTSQQDITTGITKQGIINFCRMCHRYNKPPWVY 84
Query: 56 -------------------------------------KIKLKLTVQKEVLEGVIVEQSDV 78
+I+L+LTVQKEVL ++Q+ +
Sbjct: 85 CERESKEMLALCLKKIIGINKLKLIDSAFLYTEPHSRRIRLRLTVQKEVLNNTSIQQNFI 144
Query: 79 V--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
+ C + F P W A VQL ++I K++A + K+
Sbjct: 145 AEFVEHYGQCDDCKKEFT---PHTWGACVQLRQKVEHKKTFYFLEQIILKNNAHDKILKV 201
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ D G++FF+ + A + V+F+ V+P + KQL+S ++ KY ++EI
Sbjct: 202 EEKDDGLDFFYKNKMQANRMVDFLASVIPLKITASKQLISHDDRNNTFVNKYVWALEIPK 261
Query: 183 ISAHN-----------LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS------ 225
+ + LG + P ICTKV+N + +D + L+A++Y+
Sbjct: 262 VCKDDLCIFPPKLCKELGGISPLCICTKVSNMLHFVDTHQHKRIDLNAEKYFHYENDITC 321
Query: 226 -PFKALHTSRQLVEY--------------------IVLD----VKVASTENDTILSTRTH 260
K T ++ Y + LD V V T + + R+H
Sbjct: 322 ISLKNNQTQFMVINYEKIESNGEKMNNSYVSSIQNVYLDKLAHVTVQRTSDWKEFTIRSH 381
Query: 261 LGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKL 320
LG +L G + GYDL N ++ +L+ K+ PD + +KK++ ++ R R P KL
Sbjct: 382 LGEILKEGSFVAGYDLTTINYSE-DLDVLKN--APDVVLVKKTFDKQATR--RGPRIWKL 436
Query: 321 KPLEMEVDGSKCGADRE----------KVNNEYEEFLRDL 350
K ++M DG + E N+++EEF+ D+
Sbjct: 437 KRMQM--DGIMVDEEDENENTKKNKKKVKNDDFEEFMDDI 474
>gi|145552184|ref|XP_001461768.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429604|emb|CAK94395.1| unnamed protein product [Paramecium tetraurelia]
Length = 532
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 95/338 (28%), Positives = 161/338 (47%), Gaps = 56/338 (16%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDV--VMSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
+IK+KLT+QKEVL ++Q+ + + C + F P W AAVQ+
Sbjct: 112 RIKVKLTIQKEVLNNTNMQQTFICEFVEHYQQCEDCKKEF---TPHTWGAAVQVRQRVDH 168
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+L+ K++A + KI+++D G++FF+ RSHA + VE++ ++P + + KQ
Sbjct: 169 KKTFFYLEQLLLKYNANDKVLKIEQVDDGLDFFYKSRSHANRLVEYLSTILPIRVKQSKQ 228
Query: 160 LVSRGTKSRNCKCKYTCSVEISAISAHN-----------LGNLGPFVICTKVTNSIALLD 208
LVS S KY +V++ + + LG +G +C K+T I L
Sbjct: 229 LVSHDASSNLFNYKYVYAVDLPKVCKDDLVILPQKLCKELGGVGRVQLCYKLTTIIYPLK 288
Query: 209 PF-----TLRHCYLDADQYWRS--PFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHL 261
F L+ L Q+ + + +HT YI + + + + N ++ ++HL
Sbjct: 289 LFLCMKMKLKSITLKTHQHEFTVVDVERIHTRNLNESYISITI-IRESNNYVPVTVKSHL 347
Query: 262 GHLLILGDYAIGYDLHEANQNDIE-LENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKL 320
G +L G AIGYDL + +E + NY P+ I +K+ ++ RK KL
Sbjct: 348 GDILKTGQVAIGYDLTQLTIESLEDISNY-----PECILVKRQI----NKEARKLRIFKL 398
Query: 321 KPLE----MEVDGSKCGADREKVNN----EYEEFLRDL 350
K LE ME +G + +++K N ++EEFL D+
Sbjct: 399 KRLEAQNVMEEEGGERKRNQQKKQNDQEEQFEEFLDDV 436
>gi|50546463|ref|XP_500701.1| YALI0B10021p [Yarrowia lipolytica]
gi|49646567|emb|CAG82946.1| YALI0B10021p [Yarrowia lipolytica CLIB122]
Length = 564
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 156/361 (43%), Gaps = 73/361 (20%)
Query: 58 KLKLTVQKEV--LEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
K+K+TV+ E + V+Q VV + C + F + W A VQ+
Sbjct: 140 KVKVTVRGESPQFPNITVQQDCVVEFTEGSGQCPDCAKSFT---ANKWTAQVQVRQKVDH 196
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI K I++ G+ F F+ + A +F EFVG VVP + + ++
Sbjct: 197 KKTFFYLEQLILKSRMDDECISIEEAREGLNFLFASKHAAARFSEFVGSVVPCRIKQSEE 256
Query: 160 LVSRGTKSRNCKCKYTCSVEISAISAHNL--------GNLGPF----VICTKVTNSIALL 207
LVS T + + K+T S++I I +L +G + V+C K+ ++I L+
Sbjct: 257 LVSTDTHTGHSTFKFTFSIDIVPICREDLIVLSKKQATQIGLYKSRVVLCYKIGSTIHLI 316
Query: 208 DPFTLRHCYLDADQYWRSPFKALHTS----RQLVEYIVLDVK------VASTE------- 250
DP +LR + Q++R PF + TS + L +++VLD + V TE
Sbjct: 317 DPNSLRTADVTQQQFFRDPFTPVVTSTSGGKSLTKFMVLDCEIILDPSVDVTESFSHVSA 376
Query: 251 -----------------NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLV 293
ND RTH+G +L GD A+GY + N N E E+
Sbjct: 377 KHKLAEVTLARESDLGVNDQQYVIRTHIGAILQPGDTALGYFMGNTNVNHDEWESIPEEQ 436
Query: 294 PPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV----DGSKCGADREKVNNEYEEFLRD 349
PD + +KK Y EK +K +K KL+ + E D K EYEEFL +
Sbjct: 437 RPDVVLVKKYYGEK--KKSKKSRNWKLRRMATEYNEADDNQKNAHPSAPGGAEYEEFLNE 494
Query: 350 L 350
L
Sbjct: 495 L 495
>gi|305380525|gb|ADM49036.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 239
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 99/191 (51%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L +N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D +++
Sbjct: 121 FDAIHESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPARKQDADRL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|305380542|gb|ADM49044.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 245
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 99/191 (51%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L +N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D +++
Sbjct: 121 FDAIHESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPARKQDADRL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|305380569|gb|ADM49057.1| nonsense-mediated protein [Talaromyces flavus]
Length = 227
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 FDAIQESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMSYEEEEPGRKQDAERL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|305380544|gb|ADM49045.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 243
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 99/191 (51%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L +N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D +++
Sbjct: 121 FDAIHESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPARKQDADRL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|305380538|gb|ADM49042.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 229
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 99/191 (51%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L +N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D +++
Sbjct: 121 FDAIHESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPARKQDADRL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|253744702|gb|EET00862.1| Nonsense-mediated mRNA decay protein 3 [Giardia intestinalis ATCC
50581]
Length = 488
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 128/315 (40%), Gaps = 80/315 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC CG+ + N ++MC+ CL+++V+IT+ + + C
Sbjct: 9 ILCCSCGVPIEPNPTSMCLPCLRAQVNITDGIDTEQTLIHCHQCNRYNVGNDKYVAAELE 68
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSR 82
+IK++L +Q EV +G +++Q V +
Sbjct: 69 SPQLLGICLKKIRGLQHVRVVDAGFIWTEEHSKRIKVRLLIQAEVQQGAVLQQEHVC-TF 127
Query: 83 NITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHG 128
+ VP W VQ+ ++I + A + IK+ HG
Sbjct: 128 TVMSTLCVPCQYTHTEHTWSTRVQVRQTVNHKRTFLYLEQIILHNRAKLNISNIKEYPHG 187
Query: 129 IEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA--- 185
++F+F+ RS A +FV+ + VP + ++L+S KS +Y+ EI+ +
Sbjct: 188 LDFYFTSRSDAGRFVDLLHNSVPGRHSESQKLISADLKSNTATIEYSIMFEIAQLCKDDL 247
Query: 186 --------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLV 237
+ LG LGP I +KV + I +DP T L A QY+ PF A R V
Sbjct: 248 VYLPQRFYNQLGGLGPLCIVSKVNSRIHFIDPLTGNTGSLTASQYFEKPFTAFRDRRHKV 307
Query: 238 EYIVLDVKVASTEND 252
E IVL V+ EN+
Sbjct: 308 EGIVL---VSEEENN 319
>gi|305380498|gb|ADM49024.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 243
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 FDAIQESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|305380500|gb|ADM49025.1| nonsense-mediated protein [Talaromyces pinophilus]
gi|305380502|gb|ADM49026.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 245
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 FDAIQESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|305380563|gb|ADM49054.1| nonsense-mediated protein [Talaromyces flavus]
Length = 245
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 FDAIQESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMSYEEEEPGRKQDAERL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|305380481|gb|ADM49017.1| nonsense-mediated protein [Talaromyces verruculosus]
Length = 245
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 100/193 (51%), Gaps = 33/193 (17%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPHTLQTAEVSAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVLGYHLTGTNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL--EMEVDGSKCGADRE 337
+ Y S++ PD + ++K Y K + K R KLK + E E G K ADR
Sbjct: 121 FDAIQESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDADR- 175
Query: 338 KVNNEYEEFLRDL 350
+ ++E FLRD+
Sbjct: 176 -LEADFEMFLRDI 187
>gi|305380486|gb|ADM49019.1| nonsense-mediated protein [Talaromyces aculeatus]
Length = 245
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 FDAIQESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|118401245|ref|XP_001032943.1| NMD3 family protein [Tetrahymena thermophila]
gi|89287289|gb|EAR85280.1| NMD3 family protein [Tetrahymena thermophila SB210]
Length = 625
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 106/472 (22%), Positives = 187/472 (39%), Gaps = 144/472 (30%)
Query: 10 VRKTVSCCKCGITM--VSNASNMCVTCLKSEVDITESLQKHANITPCP------------ 55
V + CC CG++ +NMCV CL ++ DIT + K + C
Sbjct: 27 VTANILCCMCGVSFNAAQTRTNMCVNCLTNQQDITTGITKQGVVNFCRMCRRYNKPPWVY 86
Query: 56 -------------------------------------KIKLKLTVQKEVLEGVIVEQSDV 78
+I+++LT+QKEV+ ++Q+ V
Sbjct: 87 CERESKEMLSLCLKKIKGLEKVKLIDSAFLYTEPHSRRIRIRLTIQKEVMNNTSIQQNFV 146
Query: 79 V--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
V + C + F P W A VQL +++ KH+A + K+
Sbjct: 147 VEFVEHYGQCDDCKKEFT---PHTWGAQVQLRQKVEHKKTFFFLEQVMLKHNAHDKVLKV 203
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
++ D G++FF+ + A + V+F+ V+P + + KQL+ ++ KY+ SVEI
Sbjct: 204 EEKDDGLDFFYKNKMQANRLVDFIQSVIPCKIKPSKQLIGLDDRNNIYNYKYSWSVEIPK 263
Query: 183 ISAHN-----------LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQY--WRSPFKA 229
I + LG + P V+C KV+N + +D T + + A++Y + +
Sbjct: 264 ICKDDLCVFPPRLCKELGGISPLVLCVKVSNMLHFVDTHTHKRIDITAERYFHYENDIIV 323
Query: 230 LHTSRQLVEYIVLDVKVASTE------------NDTILST-------------------- 257
L + E++V ++ E N + +S+
Sbjct: 324 LSLKKNSTEFMVTGIEKIENEFTNPQSLNESSVNTSYMSSISNVYQDKLAHLTLMRTSDW 383
Query: 258 -----RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKH 312
+ HLG ++ G +GYDL N ++ +LE K+ P+ I +K+ Y ++N
Sbjct: 384 KEFHAKAHLGEIIKEGCMVLGYDLTTLNYSE-DLEVLKN--APEIIIVKRIYDKEN---- 436
Query: 313 RKPNPPKLKPLEMEVDGSKCGADREKVN--------------NEYEEFLRDL 350
K KLK L+M DG + E+ N ++EEF+ D+
Sbjct: 437 -KARIWKLKRLQM--DGVMVEENTEEANKKGKKKIVSDQDKEQDFEEFMDDI 485
>gi|305380548|gb|ADM49047.1| nonsense-mediated protein [Talaromyces ruber]
Length = 197
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 29/188 (15%)
Query: 188 LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK-- 245
LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 LGNINPLTLCFRVGTSISLLDPHTLQTAEVTAPIYWRQPFKNLADVQELVEFVVMDIEPV 60
Query: 246 -------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE- 287
VA ND TRTHLG +L +GD +GY L +N ND +
Sbjct: 61 GESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPNFDA 120
Query: 288 -----NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNE 342
Y S++ PD + ++K Y K + K R KLK + E + D +++ +
Sbjct: 121 IHESSQYGSMI-PDVVLVRKYYARKKKTKSRN---WKLKRMNYEEEEPARKQDADRLEAD 176
Query: 343 YEEFLRDL 350
+E FLRD+
Sbjct: 177 FEMFLRDI 184
>gi|305380529|gb|ADM49038.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 243
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 29/190 (15%)
Query: 186 HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK 245
+LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 RSLGNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIE 60
Query: 246 ---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIEL 286
VA ND TRTHLG +L +GD +GY L +N ND
Sbjct: 61 PVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPNF 120
Query: 287 E------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVN 340
+ Y S++ PD + ++K Y K + K R KLK + E + D +++
Sbjct: 121 DAIHESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPARKQDADRLE 176
Query: 341 NEYEEFLRDL 350
++E FLRD+
Sbjct: 177 ADFEMFLRDI 186
>gi|305380496|gb|ADM49023.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 206
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S + PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 FDAIQESSQYGSTI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|305380510|gb|ADM49029.1| nonsense-mediated protein [Talaromyces pinophilus]
gi|305380512|gb|ADM49030.1| nonsense-mediated protein [Talaromyces pinophilus]
gi|305380514|gb|ADM49031.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 245
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S + PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 FDAIQESSQYGSTI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|305380522|gb|ADM49035.1| nonsense-mediated protein [Penicillium cecidicola]
Length = 245
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND RTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNSYFARTHLGGVLHVGDSVMGYHLTGTNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 FDAIQESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|305380488|gb|ADM49020.1| nonsense-mediated protein [Talaromyces purpurogenus]
Length = 199
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 97/190 (51%), Gaps = 27/190 (14%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P IC +V SI+LLDP TL+ + + YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNIHPLTICFRVGTSISLLDPTTLQTADVPSAVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQND-- 283
+ VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGVLHVGDSVLGYHLTGTNFNDPN 120
Query: 284 ---IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVN 340
I+ N PD + ++K Y K + K R KL+ + +E + D +++
Sbjct: 121 FDAIQESNQYGSTIPDVVLVRKYYARKKKPKSRN---WKLRRMALEEEEPARKQDADRLE 177
Query: 341 NEYEEFLRDL 350
++E FLRD+
Sbjct: 178 ADFEMFLRDI 187
>gi|159118843|ref|XP_001709640.1| Nonsense-mediated mRNA decay protein 3 [Giardia lamblia ATCC 50803]
gi|157437757|gb|EDO81966.1| Nonsense-mediated mRNA decay protein 3 [Giardia lamblia ATCC 50803]
Length = 491
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 131/317 (41%), Gaps = 82/317 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC CG+ + N ++MC+ CL++ V+IT+ + + C
Sbjct: 9 ILCCSCGVPIEPNPTSMCLPCLRARVNITKGIDTEQTLIHCHQCNRYNVGNEKYVAAELE 68
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMSR 82
+IK++L +Q EV +G +++Q +
Sbjct: 69 SPQLLGICLKKIRGLQHVRVVDAGFIWTEEHSKRIKVRLLIQAEVQQGAVLQQEHICTFT 128
Query: 83 NITCVNLVPGFMQTGPDH-WDAAVQL--------------ELIQKHDAPARATKIKKMDH 127
++ + + + T +H W VQ+ ++I + A + IK+ H
Sbjct: 129 VVSTLCVPCQYTHT--EHTWSTRVQVRQTVNHKRTFLYLEQIILHNRAKLNISNIKEYPH 186
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISA-- 185
G++F+F+ RS A +FV+ + VP + ++L+S KS +Y+ EI+ +
Sbjct: 187 GLDFYFTSRSDAGRFVDLLHNSVPGRHSESQKLISADLKSNTATIEYSVMFEIAQLCKDD 246
Query: 186 ---------HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQL 236
+ LG LGP I +KV + I +DP T L A QY+ PF A R
Sbjct: 247 LVYLPRRFYNQLGGLGPLCIVSKVNSRIHFVDPLTGNTGSLTAAQYFEKPFTAFRDRRHK 306
Query: 237 VEYIVLDVKVASTENDT 253
VE IVL V+ EN +
Sbjct: 307 VEGIVL---VSEEENSS 320
>gi|57900085|dbj|BAD88147.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 514
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 34/180 (18%)
Query: 184 SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLD 243
++ +LG LGP V+C KVTN++ALLD TLR +L +Y R + TSRQLVEY+VLD
Sbjct: 298 ASRDLGGLGPIVLCVKVTNALALLDTSTLRVVHLGIKEYDRCRLEPALTSRQLVEYVVLD 357
Query: 244 V-------------KVAST----ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIEL 286
V +VA +NDTI + RTHLGH+L G A+G DL+ AN N+ ++
Sbjct: 358 VDHEPEPAAGVAYAQVARASDLGKNDTIFTVRTHLGHVLNAGHRALGDDLYGANVNNHDV 417
Query: 287 ENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEF 346
E++ PD + +KK ++ + R+ + DG C R++ +E EE
Sbjct: 418 ESHGL---PDAVLVKKINEKGSTRRQLQ-------------DGDGC-RRRKRDGDEMEEI 460
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP 55
T CC CG+ M NA+N C C++S VDI + +HA++ CP
Sbjct: 29 TSICCTCGVPMAPNAANTCALCIRSRVDIAAGVPRHADVVHCP 71
>gi|218189764|gb|EEC72191.1| hypothetical protein OsI_05267 [Oryza sativa Indica Group]
Length = 522
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 34/180 (18%)
Query: 184 SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLD 243
++ +LG LGP V+C KVTN++ALLD TLR +L +Y R + TSRQLVEY+VLD
Sbjct: 298 ASRDLGGLGPIVLCVKVTNALALLDTSTLRVVHLGIKEYDRCRLEPALTSRQLVEYVVLD 357
Query: 244 V-------------KVAST----ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIEL 286
V +VA +NDTI + RTHLGH+L G A+G DL+ AN N+ ++
Sbjct: 358 VDHEPEPAAGVAYAQVARASDLGKNDTIFTVRTHLGHVLNAGHRALGDDLYGANVNNHDV 417
Query: 287 ENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEF 346
E++ PD + +KK ++ + R+ + DG C R++ +E EE
Sbjct: 418 ESHGL---PDAVLVKKINEKGSTRRQLQ-------------DGDGC-RRRKRDGDEMEEI 460
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK 56
T CC CG+ M NA+N C C++S VDI + +HA++ CP
Sbjct: 29 TSICCTCGVPMAPNAANTCALCIRSRVDIAAGVPRHADVVHCPS 72
>gi|123472285|ref|XP_001319337.1| NMD3 family protein [Trichomonas vaginalis G3]
gi|121902118|gb|EAY07114.1| NMD3 family protein [Trichomonas vaginalis G3]
Length = 479
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/356 (23%), Positives = 142/356 (39%), Gaps = 95/356 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
V CC CG+ N NMC+ CLK +VD T+++ + + C
Sbjct: 12 VPCCICGVPTEPNPFNMCIDCLKQKVDFTDTVPNTSAVVYCKNCGRYQTGPTTWQHAELE 71
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVV--M 80
+I++ LT+QKE L G ++ Q+ +V +
Sbjct: 72 SPELLSICLSKVNGLKDMKIVDSQFLYTEPHSRRIRVSLTLQKEALNGTVLRQTVIVTFV 131
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ C V T +HW A VQL +LI KH A A T ++++D
Sbjct: 132 VNIVQCPKCVEA--ATPREHWIANVQLRQNVRHKRSLFRLEQLILKHRAHAGTTSLERVD 189
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAH 186
G++F F ++ A +F+ F+ + PA+ + V ++ +++ V++ +
Sbjct: 190 DGVDFHFPDKAGANRFINFLLQHSPAKYDETAKQVGEDIQNGTLDMRFSYPVKVPPVCRQ 249
Query: 187 NL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
+ GN + +VT I L+DP T +D YW++ F + T
Sbjct: 250 DFVILPDFFVKKTGNQAHVAVVHRVTKIIRLVDPMTATPIDIDGPTYWKNQFDPVCTIDS 309
Query: 236 LVEYIVL---------------DVKVASTENDTILSTRTHLGHLLILGDYAIGYDL 276
+ ++ VL DV++A + + RTHLG L +G+ + YDL
Sbjct: 310 VTKFNVLNIEPFGPRNGQFQLADVELADENYEEQIMVRTHLGDHLHIGEPCLAYDL 365
>gi|357494087|ref|XP_003617332.1| Glycogen synthase kinase 3 beta [Medicago truncatula]
gi|355518667|gb|AET00291.1| Glycogen synthase kinase 3 beta [Medicago truncatula]
Length = 393
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 91/201 (45%), Gaps = 48/201 (23%)
Query: 121 KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI 180
+I++ D G F+F+ HA VE++ ++VP++ H Q+ S +C Y VEI
Sbjct: 52 RIERNDQGFTFYFNSLDHASCLVEYIRDIVPSKI-HCHQIPS--------ECSYNFFVEI 102
Query: 181 SAISAHNLGNLGP---------FVICTKVTNSIA-LLDPFTLRHCYLDADQYWRSPFKAL 230
I +L L P VICT+V I LLDPFTL L AD YW +PF
Sbjct: 103 VPICCGDLIFLPPDVAASFGANIVICTRVAKKITTLLDPFTLTAFSLKADHYWNAPFTHS 162
Query: 231 HTSRQLVEYIVL-------------------------DVKVASTEN----DTILSTRTHL 261
QLV+Y VL D VA EN DT RTHL
Sbjct: 163 FNRTQLVKYFVLNIVLQEDGEEIAADSSTAAKKYRLADAVVARVENFGNNDTTFQIRTHL 222
Query: 262 GHLLILGDYAIGYDLHEANQN 282
GH+L GDYA+GYDL N
Sbjct: 223 GHILKSGDYALGYDLSGGGAN 243
>gi|305380550|gb|ADM49048.1| nonsense-mediated protein [Talaromyces ruber]
Length = 219
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 96/187 (51%), Gaps = 29/187 (15%)
Query: 189 GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK--- 245
GN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 GNINPLTLCFRVGTSISLLDPHTLQTAEVAAPIYWRQPFKNLADVQELVEFVVMDIEPVG 60
Query: 246 ------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE-- 287
VA ND TRTHLG +L +GD +GY L +N ND +
Sbjct: 61 ESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPNFDAI 120
Query: 288 ----NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEY 343
Y S++ PD + ++K Y K + K R KLK + E + D +++ ++
Sbjct: 121 HESSQYGSMI-PDVVLVRKYYARKKKTKSRN---WKLKRMNYEEEEPARKQDADRLEADF 176
Query: 344 EEFLRDL 350
E FLRD+
Sbjct: 177 EMFLRDI 183
>gi|305380533|gb|ADM49040.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 215
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 96/187 (51%), Gaps = 29/187 (15%)
Query: 189 GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK--- 245
GN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 GNINPLTLCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVG 60
Query: 246 ------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE-- 287
VA ND TRTHLG +L +GD +GY L +N ND +
Sbjct: 61 ESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPNFDAI 120
Query: 288 ----NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEY 343
Y S++ PD + ++K Y K + K R KLK + E + D +++ ++
Sbjct: 121 HESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPARKQDADRLEADF 176
Query: 344 EEFLRDL 350
E FLRD+
Sbjct: 177 EMFLRDI 183
>gi|290993544|ref|XP_002679393.1| predicted protein [Naegleria gruberi]
gi|284093009|gb|EFC46649.1| predicted protein [Naegleria gruberi]
Length = 452
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 43/188 (22%)
Query: 189 GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVAS 248
G +GP VIC KVTNS+ +DP+TL++ + A Y++SPF+AL + QL EY + D++V
Sbjct: 235 GQIGPLVICYKVTNSLFFIDPYTLKNFEITAQNYFQSPFRALLSVTQLAEYTINDIEVKK 294
Query: 249 TENDTILSTRT--------------------------HLGHLLILGDYAIGYDLHEANQN 282
+ +S + H+ LL +GD GYDL AN N
Sbjct: 295 NQKGRPISAQAGRFQLSEVSLVKTSELGVAPDVQTFCHITQLLEVGDTVYGYDLKNANLN 354
Query: 283 DIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNE 342
+L +YK LV PD I +KK Y+ + QR KL M+ +G N+
Sbjct: 355 SDDLASYKKLVLPDVIIVKKKYEWETQRIW------KLHHFCMDPEG-----------ND 397
Query: 343 YEEFLRDL 350
Y+ FL DL
Sbjct: 398 YDAFLNDL 405
>gi|305380507|gb|ADM49028.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 243
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 29/189 (15%)
Query: 187 NLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK- 245
+LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 SLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEP 60
Query: 246 --------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE 287
VA ND TRTHLG +L +GD +GY L N ND +
Sbjct: 61 VGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFD 120
Query: 288 ------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNN 341
Y S + PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 AIQESSQYGSTI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERLEA 176
Query: 342 EYEEFLRDL 350
++E FLRD+
Sbjct: 177 DFEMFLRDI 185
>gi|334347422|ref|XP_001369441.2| PREDICTED: hypothetical protein LOC100015345 [Monodelphis
domestica]
Length = 1022
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 123/281 (43%), Gaps = 86/281 (30%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITES----------------LQKHANITPCP-- 55
V CC+CG+ + N +NMCV CL+++VDI+E LQ C
Sbjct: 15 VLCCECGVPIPPNPANMCVACLRTQVDISEGIPKQVSIHFCKQCERYLQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQ----SD 77
++K+KLT+QKEV+ G I++Q
Sbjct: 75 SRELLTLCLKKIKASLSKVRLIEAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVEY 134
Query: 78 VVMSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIK 123
VV S+ + V D W A VQ+ +LI KH A +IK
Sbjct: 135 VVHSQMCDACHRV-----EAKDFWKAVVQVRQKTLHKKTFYYLEQLILKHRAHQNTLRIK 189
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAI 183
++ G++F+++ + HA K V+F+ VP++S+ ++L+S S K T SVEI I
Sbjct: 190 EIHDGLDFYYAQKQHAQKMVDFLQCTVPSRSKSSQRLISHDVHSNTYNYKSTFSVEIVPI 249
Query: 184 S-----------AHNLGNLGPFVICTKVTNSIALLDPFTLR 213
A +LGN+ +C +VT+++ L+DP TL+
Sbjct: 250 CKDNVVCLPPRLAQSLGNMSQICVCIRVTSAVHLIDPSTLQ 290
>gi|305380520|gb|ADM49034.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 241
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 29/187 (15%)
Query: 189 GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK--- 245
GN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 GNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVG 60
Query: 246 ------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE-- 287
VA ND TRTHLG +L +GD +GY L N ND +
Sbjct: 61 ESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAI 120
Query: 288 ----NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEY 343
Y S++ PD + ++K Y K + K R KLK + E + D E++ ++
Sbjct: 121 QESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERLEADF 176
Query: 344 EEFLRDL 350
E FLRD+
Sbjct: 177 EMFLRDI 183
>gi|305380557|gb|ADM49051.1| nonsense-mediated protein [Talaromyces sp. LCP 4272]
Length = 241
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 96/190 (50%), Gaps = 29/190 (15%)
Query: 186 HNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK 245
+LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 RSLGNINPLTLCYRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIE 60
Query: 246 ---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIEL 286
VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 PVGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNF 120
Query: 287 E------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVN 340
+ Y S + PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 DAIQESSQYGSTI-PDVVLVRKFYARKKKGKSRN---WKLKRMNYEEEEPGRKQDAERLE 176
Query: 341 NEYEEFLRDL 350
++E FLRD+
Sbjct: 177 ADFEMFLRDI 186
>gi|221481841|gb|EEE20211.1| NMD3 protein, putative [Toxoplasma gondii GT1]
Length = 799
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 130/313 (41%), Gaps = 84/313 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITES----------------------------- 44
V CC CG ++ + ++C++CL +VDITE
Sbjct: 29 VLCCICGCSIPPSPRSICLSCLAQQVDITEGISRSIVLPCCRTCGRYMHIQNKWLACELE 88
Query: 45 --------------LQKHANITPCP---------KIKLKLTVQKEVLEGVIVEQSDVVMS 81
L+K I C ++K+KLTVQ +VL+G Q +++
Sbjct: 89 SRELMAVCLKKVRGLKKVEKIVDCQWLWTEPHSRRVKMKLTVQSDVLDGRAGLQQSLIIE 148
Query: 82 ---RNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+N C + T W A VQ+ +L+ KH AR + +
Sbjct: 149 GVIQNTQCDECKKSY--TPHAGWTAMVQVRQHAEHKRTFLFLEQLVLKHRLAARLLNVVE 206
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++F F R A+ F +F P+ SR KQL+S S KYT SV ++ +
Sbjct: 207 KSDGLDFHFPSRQAALHFADFCQSRFPSVSRQAKQLISHDASSNIYYHKYTISVTLAPVC 266
Query: 185 AHNL---------GNLGPFV---ICTKVTNS-IALLDPFTLRHCYLDADQYWRSPFKALH 231
+L LG F +CT+V + I L DPF+ + + ++YW+SPF+ L
Sbjct: 267 KDDLVYIHRKQAQAQLGGFTNLSLCTRVAGAGIQLTDPFSGKVLNVSPEKYWKSPFQPLC 326
Query: 232 TSRQLVEYIVLDV 244
T + L ++VLDV
Sbjct: 327 TRKHLSSFLVLDV 339
>gi|26330198|dbj|BAC28829.1| unnamed protein product [Mus musculus]
Length = 263
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 112/260 (43%), Gaps = 57/260 (21%)
Query: 170 CKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKA 229
CK C +S A +LGN+ IC +VT++I L+DP TL+ +D + +W PF +
Sbjct: 10 CKDNVVC---LSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNS 66
Query: 230 LHTSRQLVEYIVLDV---------------------------KVASTENDTILSTRTHLG 262
L +QL E+IV++ K + D RTHLG
Sbjct: 67 LCHPKQLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNTDKQYFCRTHLG 126
Query: 263 HLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKP 322
HLL GD +G+DL N ND + S PD + IKKSY +++ R KLK
Sbjct: 127 HLLNPGDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLK- 182
Query: 323 LEMEVDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSV 363
E+ D D E+ +Y++FL DL + S TD E P +
Sbjct: 183 -ELARDRENMDTDDER---QYQDFLEDLEEDEAIRKHVNIYRDATIPVESDTDDEGAPRI 238
Query: 364 PLDYLLADLDSSDKEEGDDS 383
L +L DL S G++
Sbjct: 239 SLAEMLEDLHISQDATGEEG 258
>gi|305380561|gb|ADM49053.1| nonsense-mediated protein [Talaromyces flavus]
Length = 239
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 94/186 (50%), Gaps = 29/186 (15%)
Query: 190 NLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK---- 245
N+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 NINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE 60
Query: 246 -----------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE--- 287
VA ND TRTHLG +L +GD +GY L N ND +
Sbjct: 61 SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQ 120
Query: 288 ---NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYE 344
Y S++ PD + ++K Y K + K R KLK + E + D E++ ++E
Sbjct: 121 ESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMSYEEEEPGRKQDAERLEADFE 176
Query: 345 EFLRDL 350
FLRD+
Sbjct: 177 MFLRDI 182
>gi|305380565|gb|ADM49055.1| nonsense-mediated protein [Talaromyces flavus]
Length = 240
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 94/186 (50%), Gaps = 29/186 (15%)
Query: 190 NLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK---- 245
N+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 NINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGE 60
Query: 246 -----------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE--- 287
VA ND TRTHLG +L +GD +GY L N ND +
Sbjct: 61 SKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQ 120
Query: 288 ---NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYE 344
Y S++ PD + ++K Y K + K R KLK + E + D E++ ++E
Sbjct: 121 ESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMSYEEEEPGRKQDAERLEADFE 176
Query: 345 EFLRDL 350
FLRD+
Sbjct: 177 MFLRDI 182
>gi|298712609|emb|CBJ33306.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 575
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 98/430 (22%), Positives = 164/430 (38%), Gaps = 132/430 (30%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESL-QKHANITPC----------------- 54
T+ CC CG + N +NMC CL+ +VD+TE + +K I C
Sbjct: 62 TILCCLCGRPIQPNGANMCGACLRDQVDVTEGIPKKGLTIIQCRRCLKWLTKNDHWSGFE 121
Query: 55 ----------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV- 79
++K+++TV+KEVL V+++Q V
Sbjct: 122 LESAPFLALVLKKIPGLAKQDLVDAKWIWTEPHSKRLKVRITVRKEVLNKVMLQQDATVE 181
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ N C F W A VQ+ + I + DA + ++
Sbjct: 182 FVVHNRQCNVCNKEFTN---QTWKAIVQIRQRAGHKRTMMLLEQRILQADAHRKCISVET 238
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+ G++ +F + AV+FV ++ V P +SR +LVS S ++T +V++ +
Sbjct: 239 VRGGMDVYFGAKHDAVEFVGYLSSVAPIRSRESTKLVSTDNHSNVRNTQHTVAVDVPTLC 298
Query: 185 AHNL-------GNL--GPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQ 235
+L GN G + +VT+ + + P + + + AD+YWRSP + L ++
Sbjct: 299 RDDLVALPRGSGNRLQGTITVVQRVTSVVQFVGPSSGQTADMPADRYWRSPPEPLLSASS 358
Query: 236 LVEYIVLDVK----------------------------VASTEN---------------- 251
L E++VLD + A T+N
Sbjct: 359 LTEFVVLDSEPADGFSAAGGGGGGGGGGKKERHAAASSAAGTKNKSLWEVVVALDSDVGS 418
Query: 252 -DTILSTRTHLG------HLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
D + THL H L GD +GYDL N N+ L V PD + +K++
Sbjct: 419 ADDTFTVLTHLSADSAGLHPLEAGDMLLGYDLRGKNFNEALLSGLSGDV-PDIVLVKRAP 477
Query: 305 KEKNQRKHRK 314
K + +K
Sbjct: 478 PPKTAQSKKK 487
>gi|357494009|ref|XP_003617293.1| Nonsense-mediated mRNA decay protein [Medicago truncatula]
gi|355518628|gb|AET00252.1| Nonsense-mediated mRNA decay protein [Medicago truncatula]
Length = 312
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 94/212 (44%), Gaps = 54/212 (25%)
Query: 173 KYTCSVEISAISAHNLGNLGP---------FVICTKVTNSIALLDPFTLRHCYLDADQYW 223
KY VEI I +L L P VICT+V I LLDPFTL L AD+YW
Sbjct: 78 KYHFFVEIVPIFCGDLIFLPPNIAATLGANIVICTRVAKKITLLDPFTLTAFSLKADEYW 137
Query: 224 RSPFKALHTSRQLVEYIVLDV---------------------KVASTE----NDTILSTR 258
+PF T QLV+Y+VLD+ VA E NDT +
Sbjct: 138 NAPFTHSFTRTQLVKYVVLDIVLQEEEEIAAAAAKKYRLADAVVARVEDFGNNDTTFQIK 197
Query: 259 THLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPP 318
THLGH+L GDYA+GYDL + N +P + K SY E+N R
Sbjct: 198 THLGHILKSGDYALGYDLSGRKEGGGANTNINGDLPAAILITKSSYDEENGR-------- 249
Query: 319 KLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ + V+G K ++Y+ FL+DL
Sbjct: 250 ----IVVVVEG--------KWESDYQLFLKDL 269
>gi|388510786|gb|AFK43459.1| unknown [Medicago truncatula]
Length = 153
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 90/160 (56%), Gaps = 34/160 (21%)
Query: 254 ILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHR 313
+ S RTHLGHLL GD A+GYDL+ AN ND+EL+ YK + P+ + IKKSY EK R
Sbjct: 1 MFSIRTHLGHLLKPGDNALGYDLYAANSNDMELDRYKGNI-PEVVLIKKSYPEK-----R 54
Query: 314 KPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL----------------------M 351
K KLK + ME D K + +K + EYE FL++L +
Sbjct: 55 KTRSFKLKRIPMEAD-DKIKVNEDKRSAEYELFLKELEENPELRFNISLYQNKDYQPSEV 113
Query: 352 ASVTDKEDVPSVPLDYLLA---DLDSSDKE--EGDDSMIE 386
ASVTD E+ PSVP D LL DLD S+ E +G+D+M E
Sbjct: 114 ASVTDGEEAPSVPWDELLTGLEDLDLSEGEGDDGEDNMAE 153
>gi|305380567|gb|ADM49056.1| nonsense-mediated protein [Talaromyces flavus]
Length = 236
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 29/185 (15%)
Query: 191 LGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK----- 245
+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 INPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGES 60
Query: 246 ----------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE---- 287
VA ND TRTHLG +L +GD +GY L N ND +
Sbjct: 61 KGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQE 120
Query: 288 --NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEE 345
Y S++ PD + ++K Y K + K R KLK + E + D E++ ++E
Sbjct: 121 SSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMSYEEEEPGRKQDAERLEADFEM 176
Query: 346 FLRDL 350
FLRD+
Sbjct: 177 FLRDI 181
>gi|305380518|gb|ADM49033.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 244
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 29/191 (15%)
Query: 185 AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
A +LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D+
Sbjct: 1 ARSLGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDI 60
Query: 245 K---------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
+ VA ND TRTHLG +L +GD +GY L N ND
Sbjct: 61 EPVGESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPN 120
Query: 286 LE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKV 339
+ Y S++ PD + ++K Y K + K R KLK + E + D E++
Sbjct: 121 FDAIQESSQYGSMI-PDVVLVRKYYPRKKKPKSRN---WKLKRMNYEEEEPGRKQDAERL 176
Query: 340 NNEYEEFLRDL 350
++E FLRD+
Sbjct: 177 EADFEMFLRDI 187
>gi|357494467|ref|XP_003617522.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355518857|gb|AET00481.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 259
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 71/162 (43%), Gaps = 43/162 (26%)
Query: 190 NLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVAS- 248
N+GP VICT+V + LLDPFTL HC+LDA QYW++PF QLVEY+VLD +
Sbjct: 37 NIGPIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRTQLVEYVVLDTVLLQD 96
Query: 249 ----------------------------------------TENDTILSTRTHLGHLLILG 268
NDT RTHLG +L G
Sbjct: 97 NQDEEEEEDKEKKKNYDADAVAAAKKYCLADAVVARVKDIGNNDTTFQIRTHLGRILKPG 156
Query: 269 DYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR 310
D+A+GYDL N +P + K SY E+N R
Sbjct: 157 DHALGYDLSGGEGG--ADTNININLPAAILITKISYAEENGR 196
>gi|357481287|ref|XP_003610929.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355512264|gb|AES93887.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 319
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 87/211 (41%), Gaps = 67/211 (31%)
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+D G+ F F+ S A K V + ++PA + K Y SVEI I
Sbjct: 47 IDEGLSFCFNSISDAAKVVNLITGILPALVQWNK------------IDPYLFSVEIVPIC 94
Query: 185 -----------AHNLG-NLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +LG N+GP VICT+V + LLDPFTL C+L AD+YW +PF +
Sbjct: 95 CGDLIILPSNIAASLGPNIGPIVICTRVARTFTLLDPFTLTRCFLKADRYWDAPFTPSFS 154
Query: 233 SRQLVEYIVLD-------------------------------------------VKVAST 249
QLVEY+VL VK
Sbjct: 155 RHQLVEYVVLGIEKLDEEEEEEEVEENKQKNKIFGYADAAAAKKYRLANAIVARVKDIGN 214
Query: 250 ENDTILSTRTHLGHLLILGDYAIGYDLHEAN 280
N T RTHL +L GD+A+GYDL E +
Sbjct: 215 NNHTTFQIRTHLSRILKPGDHALGYDLPEGD 245
>gi|305380546|gb|ADM49046.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 234
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 29/180 (16%)
Query: 196 ICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK---------- 245
+C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 LCFRVGTSISLLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGESKGRFF 60
Query: 246 -----VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE------NYK 290
VA ND TRTHLG +L +GD +GY L +N ND + Y
Sbjct: 61 LAEITVARASEMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPNFDAIHESSQYG 120
Query: 291 SLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
S++ PD + ++K Y K + K R KLK + E + D +++ ++E FLRD+
Sbjct: 121 SMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPARKQDADRLEADFEMFLRDI 176
>gi|357494285|ref|XP_003617431.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355518766|gb|AET00390.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 322
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 80/179 (44%), Gaps = 44/179 (24%)
Query: 176 CSVEISAISAHNLGNLGP-FVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
C ++ + + + +LGP VICT+V + LLDPFTL HC+LDA QYW++PF
Sbjct: 81 CCGDLIFLPPNVVASLGPNIVICTRVAKTFTLLDPFTLTHCFLDAHQYWKAPFTHSFNRT 140
Query: 235 QLVEYIVLDV------------------------------------------KVAST-EN 251
QLVEY+VLD+ +V T N
Sbjct: 141 QLVEYVVLDIVLLQDNQDEEEEEEVVEENKKEKDAAAAAAAKKYRLADAVVARVKDTGNN 200
Query: 252 DTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQR 310
DT RTHLG +L GD+A+GYDL N + +P + K SY E N R
Sbjct: 201 DTTFQIRTHLGRILKPGDHALGYDLSGGVGEGGADTNTNNNLPAAILISKISYAEVNGR 259
>gi|401412263|ref|XP_003885579.1| putative NMD3 protein [Neospora caninum Liverpool]
gi|325119998|emb|CBZ55551.1| putative NMD3 protein [Neospora caninum Liverpool]
Length = 721
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 32/219 (14%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMS---RNITCVNLVPGFMQTGPDHWDAAVQL----- 107
++K+KLTVQ +VL+G Q V++ ++ C + T W A VQ+
Sbjct: 48 RVKMKLTVQSDVLDGRAGLQQSVIIEGVIQSTQCDECKKSY--TPHAGWTAMVQVRQHAE 105
Query: 108 ---------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEK 158
+L+ KH AR + + G++F F R A+ F +F PA SR K
Sbjct: 106 HKRTFLFLEQLVLKHRLAARLLNVVEKSDGLDFHFPSRQAALHFADFCQSRFPAVSRQAK 165
Query: 159 QLVSRGTKSRNCKCKYTCSVEISAI------------SAHNLGNLGPFVICTKVTNS-IA 205
QL+S S KYT SV ++ + + LG +CT+V + I
Sbjct: 166 QLISHDASSNIYYHKYTISVTLAPVCKADLVYIHRKQAQSQLGGFPNLSLCTRVAGAGIQ 225
Query: 206 LLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
L DPF+ + + ++YW+SPF++L T + L ++VLDV
Sbjct: 226 LTDPFSGKVVNVSPEKYWKSPFQSLCTRKHLSSFLVLDV 264
>gi|440491349|gb|ELQ74007.1| NMD protein affecting ribosome stability and mRNA decay
[Trachipleistophora hominis]
Length = 444
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 158/393 (40%), Gaps = 108/393 (27%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PKIKLKLTV 63
++SCCKCGI+++ N NMC C +E+DIT+ ++ + C PK L L
Sbjct: 15 SISCCKCGISILPNCLNMCGRCRSTEIDITQGVKLCYTVENCKKCNRYLLPPKKWLVLEN 74
Query: 64 QKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQT--------------------------- 96
+ ++L +++ ++ RN+ VN GF +T
Sbjct: 75 ETDLLSFLLLRYKEI---RNLNIVN--SGFKKTEEHSRRIVLELEIAKDDLKCNIDVVFK 129
Query: 97 -------------GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGI 129
+W + VQ+ + I KH R T IK+ GI
Sbjct: 130 IRNKQCLDCDKMEAKQYWTSIVQIRQRSKSKRTFLYLEQSILKHKMYKRCTNIKERKDGI 189
Query: 130 EFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL- 188
+F++ + A + V F+ + + +L++ + K K++ SVEI + +L
Sbjct: 190 DFYYLDKHSAYEMVNFLESTIGTKLLVSNRLMTEDRNNNKMKYKFSYSVEIYPLCKDDLV 249
Query: 189 ---------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW--RSPFKALHTSRQLV 237
N+G V+ KV+ I L+DP + R + +W R F + TS+ L
Sbjct: 250 VLSEEFAKKRNVGRLVLVLKVSRKITLVDPISSRTIDVTNKCFWSNRECFTVVMTSKDLT 309
Query: 238 EYIVLDVK----------------------VASTENDTILSTRTHLGHLLILGDYAIGYD 275
+ V +++ E + + ++HLG +L D GYD
Sbjct: 310 LFQVTEIERDYQKMYGTAEKTESCFKSVDCFVRREYNNDMHCKSHLGSILREDDEVYGYD 369
Query: 276 LHEANQNDIELENYKSLVPPDTIKIKKSYKEKN 308
L N + I+ + +K+++ ++K+YK+ N
Sbjct: 370 LGNCNLHFIDRDLFKAIL------VRKNYKDLN 396
>gi|237843321|ref|XP_002370958.1| NMD3 protein [Toxoplasma gondii ME49]
gi|211968622|gb|EEB03818.1| NMD3 protein [Toxoplasma gondii ME49]
gi|221502340|gb|EEE28073.1| NMD3 protein, putative [Toxoplasma gondii VEG]
Length = 721
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 32/219 (14%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMS---RNITCVNLVPGFMQTGPDHWDAAVQL----- 107
++K+KLTVQ +VL+G Q +++ +N C + T W A VQ+
Sbjct: 45 RVKMKLTVQSDVLDGRAGLQQSLIIEGVIQNTQCDECKKSY--TPHAGWTAMVQVRQHAE 102
Query: 108 ---------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEK 158
+L+ KH AR + + G++F F R A+ F +F P+ SR K
Sbjct: 103 HKRTFLFLEQLVLKHRLAARLLNVVEKSDGLDFHFPSRQAALHFADFCQSRFPSVSRQAK 162
Query: 159 QLVSRGTKSRNCKCKYTCSVEISAISAHNL---------GNLGPFV---ICTKVTNS-IA 205
QL+S S KYT SV ++ + +L LG F +CT+V + I
Sbjct: 163 QLISHDASSNIYYHKYTISVTLAPVCKDDLVYIHRKQAQAQLGGFTNLSLCTRVAGAGIQ 222
Query: 206 LLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
L DPF+ + + ++YW+SPF+ L T + L ++VLDV
Sbjct: 223 LTDPFSGKVLNVSPEKYWKSPFQPLCTRKHLSSFLVLDV 261
>gi|305380484|gb|ADM49018.1| nonsense-mediated protein [Talaromyces aculeatus]
Length = 236
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 91/181 (50%), Gaps = 29/181 (16%)
Query: 195 VICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK--------- 245
+C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 2 TLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGESKGRF 61
Query: 246 ------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE------NY 289
VA ND TRTHLG +L +GD +GY L N ND + Y
Sbjct: 62 FLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQESSQY 121
Query: 290 KSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRD 349
S++ PD + ++K Y K + K R KLK + E + D E++ ++E FLRD
Sbjct: 122 GSMI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERLEADFEMFLRD 177
Query: 350 L 350
+
Sbjct: 178 I 178
>gi|305380555|gb|ADM49050.1| nonsense-mediated protein [Talaromyces macrosporus]
Length = 242
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 29/188 (15%)
Query: 188 LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK-- 245
LGN+ P +C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 LGNINPLTLCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPV 60
Query: 246 -------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE- 287
VA ND TRTHLG +L +GD +GY L N ND +
Sbjct: 61 GESKGRFFLAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDA 120
Query: 288 -----NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNE 342
Y S++ PD + ++K Y K + K R KLK + E + D E++ +
Sbjct: 121 IQESSQYGSMI-PDVVLVRKYYARKKKAKSRN---WKLKRMNYEEEEPGRKQDAERLEAD 176
Query: 343 YEEFLRDL 350
+E FLRD+
Sbjct: 177 FEMFLRDI 184
>gi|305380552|gb|ADM49049.1| nonsense-mediated protein [Talaromyces stipitatus]
Length = 238
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 31/185 (16%)
Query: 192 GPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK------ 245
P +C +V SI+LLDP TL+ + + YWR PFK L ++LVE++V+D++
Sbjct: 1 NPLTLCFRVGTSISLLDPNTLQTAEVPSAIYWRQPFKNLADVQELVEFVVMDIEPVGESK 60
Query: 246 ---------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQND-----IELE 287
VA ND TRTHLG +L +GD +GY L N ND I+
Sbjct: 61 GRFFLAEITVARASEMGVNDNSYFTRTHLGGILHVGDSVLGYHLTGTNFNDPNFDAIQES 120
Query: 288 NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL--EMEVDGSKCGADREKVNNEYEE 345
N + PD + ++K Y K + K R KLK + E E G K ADR + ++E
Sbjct: 121 NQYASTIPDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDADR--LEADFEM 175
Query: 346 FLRDL 350
FLRD+
Sbjct: 176 FLRDI 180
>gi|340385475|ref|XP_003391235.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Amphimedon queenslandica]
Length = 280
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 115/261 (44%), Gaps = 79/261 (30%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC+CG + N +NMCV CL+++VDITE + K + + C
Sbjct: 18 ILCCQCGTMIEPNPANMCVACLRTQVDITEGIPKQSTVYFCRSCERYLQPPSGWVSCSLE 77
Query: 55 --------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--M 80
++K+KLT+QKEVL G +++Q VV +
Sbjct: 78 SRELLALCLKKLKGLGKVHLVDAGFIWTEPHSKRLKIKLTIQKEVLAGTLLQQVFVVEFI 137
Query: 81 SRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMD 126
+ C + + D+W A VQ+ +LI KH+ + +IK++
Sbjct: 138 VHHQMCEDCQ---RREAKDYWKAVVQVRQKTTHKKTFLYLEQLILKHNIHSNVLRIKEIK 194
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAH 186
G++F+++ + A K VEF+ VVP++ + ++L+S S K+T SVEI +
Sbjct: 195 GGLDFYYAQKQDARKMVEFIMSVVPSKYKTSQELISHDVHSNTYNYKFTFSVEIVPVCRD 254
Query: 187 NLGNLGPFVIC--TKVTNSIA 205
N V+C KV NS+
Sbjct: 255 N-------VVCLPRKVANSLG 268
>gi|401828581|ref|XP_003888004.1| ribosome stability and mRNA decay protein [Encephalitozoon hellem
ATCC 50504]
gi|392999012|gb|AFM99023.1| ribosome stability and mRNA decay protein [Encephalitozoon hellem
ATCC 50504]
Length = 421
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 81/353 (22%), Positives = 144/353 (40%), Gaps = 91/353 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK-------- 56
+ CCKCGI + NMC CL +EV I+ +++ ++ C PK
Sbjct: 2 ILCCKCGILIEPRLMNMCDRCLVTEVTISAKVKRSLSVERCRGCERYLQPPKNWVELSWG 61
Query: 57 ---IKLKLTVQKEVLEGVIVEQSDVVMS----------------------------RNIT 85
L L + + L G+ + S+ + + RN+
Sbjct: 62 SKEFLLFLIKKNKTLNGLCIVDSNFIYTEPNSKRIMVGLTVRECGVEQPLEMKYVIRNMQ 121
Query: 86 CVNLVPGFMQTGPDHWDAAVQLE--------------LIQKHDAPARATKIKKMDHGIEF 131
C + W++ VQ+ L+ K++A + IK+ G++F
Sbjct: 122 CPDCAK---VEAKQFWNSIVQVRHKSRHKRMMIYLEHLVLKNNAYKDTSNIKQRKEGLDF 178
Query: 132 FFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNL 191
++ R+ A++ V F+ V+P +++ ++L+S+ + C K++ SVEI+++ +L +
Sbjct: 179 YYIDRNAAIRMVNFLQSVLPVRTKVSERLISKDVHTSKCNYKFSHSVEIASLCKDDLVVV 238
Query: 192 GP----------FVICTKVTNSIALLDPFTLRHCYLDADQYWRS--PFKALHTSRQLVEY 239
GP VI K+ SI L D +++ + YW + FK L +S Y
Sbjct: 239 GPKIRQSLGVGSLVIVQKIATSIVLFDVSSMKSVKIAGSFYWSNHDEFKILMSSSDFTRY 298
Query: 240 IVL------------DVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEAN 280
V+ D+ V S N+ R HLG++ D +GYDL N
Sbjct: 299 TVIMKNNRRMEGAGYDLTVTSDHNE-FSEARFHLGNVE-EDDEVLGYDLRHLN 349
>gi|305380516|gb|ADM49032.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 207
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 29/180 (16%)
Query: 196 ICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK---------- 245
+C +V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 1 LCFRVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGESKGRFF 60
Query: 246 -----VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE------NYK 290
VA ND TRTHLG +L +GD +GY L N ND + Y
Sbjct: 61 LAEITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQESSQYG 120
Query: 291 SLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
S + PD + ++K Y K + K R KLK + E + D E++ ++E FLRD+
Sbjct: 121 STI-PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERLEADFEMFLRDI 176
>gi|242059969|ref|XP_002459130.1| hypothetical protein SORBIDRAFT_03g046345 [Sorghum bicolor]
gi|241931105|gb|EES04250.1| hypothetical protein SORBIDRAFT_03g046345 [Sorghum bicolor]
Length = 584
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 75/145 (51%), Gaps = 28/145 (19%)
Query: 188 LGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKVA 247
LG LGP V+C KV+ SIALLD T+R + +Y R F+ L +S +LVEY+VLDV++
Sbjct: 395 LGGLGPLVLCVKVSKSIALLDTNTMRLAVMGIAEYDRYMFEPLLSSSRLVEYVVLDVELD 454
Query: 248 STE---------------------------NDTILSTRTHLGHLLILGDYAIGYDLHEAN 280
E NDT+ + +TH+G L GDY +GYDL N
Sbjct: 455 HREVHVSVLVHGSPYLMSWVQVARASDLGKNDTVFTVKTHIGWRLNPGDYVLGYDLCNVN 514
Query: 281 QNDIELENYKSLVPPDTIKIKKSYK 305
D+E + + PD + +KK YK
Sbjct: 515 NQDLESYGQRHEL-PDAVLVKKKYK 538
>gi|357480997|ref|XP_003610784.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355512119|gb|AES93742.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 333
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 92/220 (41%), Gaps = 76/220 (34%)
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
++ G+ F+F+ S A + V + +++PAQ + K Y SVEI I
Sbjct: 47 INEGLSFYFNSLSDAAEVVNLIVDILPAQVQWNK------------IDPYLFSVEIVPIC 94
Query: 185 -----------AHNLG-NLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHT 232
A +LG N+GP VICT+V + LLDPFTL HC+L A QYW +PF +
Sbjct: 95 CGDLIILPSNIAASLGPNIGPIVICTRVAKTFTLLDPFTLTHCFLKAGQYWDAPFTPSFS 154
Query: 233 SRQLVEYIVLDVK-------------------VASTENDT-------------------- 253
QLVEY VL ++ V E+D
Sbjct: 155 RPQLVEYAVLGIEKLDEEEEEEVEENKQKKKLVFKDEHDEDGDAFATYTAAAKKYRLANA 214
Query: 254 -------------ILSTRTHLGHLLILGDYAIGYDLHEAN 280
RTHLG +L GD+A+GYDL E +
Sbjct: 215 IVARVKDIGNNNHTFQIRTHLGRILKPGDHALGYDLPEGD 254
>gi|425777906|gb|EKV16058.1| Nonsense-mediated mRNA decay protein 3 [Penicillium digitatum Pd1]
gi|425779975|gb|EKV17998.1| Nonsense-mediated mRNA decay protein 3 [Penicillium digitatum
PHI26]
Length = 293
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 98/225 (43%), Gaps = 50/225 (22%)
Query: 173 KYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQ 221
K+ SVEI I A +L ++ P IC +V SI LLDP TLR L
Sbjct: 11 KFNFSVEIIPICKDDLVALPIKLARSLSDISPLAICNRVGTSINLLDPCTLRTTDLPTST 70
Query: 222 YWRSPFKALHTSRQLVEYIVLDVK---------------VAST----ENDTILSTRTHLG 262
YWR PF L + +L E+IVLD++ VA ND TRTHLG
Sbjct: 71 YWRQPFPNLADTTELREFIVLDIESTGHSNGRYLLSEATVARASDLGSNDITYFTRTHLG 130
Query: 263 HLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
+L +GD +GY L N+ IE N S PD + IKK Y + K R
Sbjct: 131 GVLHVGDSVLGYHLSGTQFNNDQFEAIENSNQYSSTIPDVVLIKKHYVRSKKSKARS--- 187
Query: 318 PKLKPLEMEVDGSKCGA------------DREKVNNEYEEFLRDL 350
+LK + E + A ++ ++ +YE FLRD+
Sbjct: 188 WRLKRMAREHEEEATAAVVNVPTSKRQEQEQARMEQDYEMFLRDV 232
>gi|145479251|ref|XP_001425648.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392719|emb|CAK58250.1| unnamed protein product [Paramecium tetraurelia]
Length = 445
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 134/308 (43%), Gaps = 68/308 (22%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNI--TCVNLVPGFMQTGPDHWDAAVQL------ 107
+IKL++TVQKE + G ++ S ++ + C + F P W A +QL
Sbjct: 101 QIKLQITVQKEAMNGTCIQDSKILNFEEVYHQCEDCKREF---TPHIWGACIQLRQRVNH 157
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQ 159
+LI +H + K++ D G+ F+F ++ A+ +EF+ +P Q + K+
Sbjct: 158 KKSFYYLEQLILQHHMNQQMLKVESADDGMNFYFKQKNQALHMLEFIRSYLPIQVKESKE 217
Query: 160 LVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIALLD 208
+ S KYT V++ I H LG + IC +V +SI L+D
Sbjct: 218 VYSF--------IKYTFVVDVPRICKDDLVILPHKLCHQLGGINRIQICYRVASSIQLID 269
Query: 209 PFTLRHCYLDADQYWRSPF--KALHTSRQLVEYIVLDV-KVASTEND------------- 252
P L+ C + A+QY++ + + E+ +LDV K+ ++ND
Sbjct: 270 PTKLKVCEISAEQYFKHDLDIRTMPLRDNCDEFTILDVEKIKPSKNDQNHPFLNSLCTVE 329
Query: 253 ---------TILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKS 303
++HLG+ L G G+DL++ N E+ + P+ I I++
Sbjct: 330 LMKDNDSDYNQYQVKSHLGNFLSAGMTVQGFDLNKYNNELDEIYD-----KPEIIIIRRK 384
Query: 304 YKEKNQRK 311
++ +RK
Sbjct: 385 PEKNKKRK 392
>gi|396082082|gb|AFN83694.1| nonsense-mediated mRNA decay protein [Encephalitozoon romaleae
SJ-2008]
Length = 421
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 141/353 (39%), Gaps = 91/353 (25%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK-------- 56
+ CCKCGI + NMC CL +EV I+ +++ ++ C PK
Sbjct: 2 ILCCKCGILIEPRLMNMCDRCLVTEVTISTKVKRSLSVERCRGCERYLQPPKSWMEFSWG 61
Query: 57 ---IKLKLTVQKEVLEGVIVEQSDVVMS----------------------------RNIT 85
L L + + L G+ + S+ + + RN+
Sbjct: 62 SKEFLLFLIKKNKTLNGLCIVDSNFIYTEPNSKRIMIGLTIRECGIEQPLEMKYVIRNMQ 121
Query: 86 CVNLVPGFMQTGPDHWDAAVQLE--------------LIQKHDAPARATKIKKMDHGIEF 131
C + W++ VQ+ L+ K+ A + IK+ G++F
Sbjct: 122 CPDCAK---VEAKQFWNSLVQVRHKGRHKRMMIYLEHLVLKNSAYEDTSNIKQRKEGLDF 178
Query: 132 FFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLG-- 189
++ R+ A++ V F+ V+P +++ ++L+S+ + C K++ SVEI+ + +L
Sbjct: 179 YYVDRNAAIRMVNFLQNVLPVRTKMSERLISKDVHTSKCNYKFSYSVEIAPLCKDDLVVV 238
Query: 190 --------NLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRS--PFKALHTSRQLVEY 239
+G + K+ SI L D ++ + YW + F+ L +S+ Y
Sbjct: 239 GEKVKQSLGIGSLAVIQKIATSIVLFDVNAMKSVKIAGSFYWSNHDEFRILMSSKDFTRY 298
Query: 240 IVL------------DVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEAN 280
V+ D+ V S +N+ R HLG++ D +GYDL N
Sbjct: 299 TVVMKNSRRREGIGYDLTVTSNQNE-FSEARFHLGNVE-EDDEMLGYDLRHLN 349
>gi|301125090|ref|XP_002909758.1| 60S ribosomal export protein NMD3, putative [Phytophthora infestans
T30-4]
gi|262105249|gb|EEY63301.1| 60S ribosomal export protein NMD3, putative [Phytophthora infestans
T30-4]
Length = 339
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 51/246 (20%)
Query: 153 QSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVT 201
+S+ +L+S + + T SVE+S I A + GN+ +C + T
Sbjct: 2 RSKSSSKLISENVHNATANLQLTYSVELSPICKDDLLVLPRKLAQSCGNISDVTLCARTT 61
Query: 202 NSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK---------------- 245
+ LLDP + + L D+YW+ PF L TS +VE++VLDV+
Sbjct: 62 AMVHLLDPVSGQKAELPTDRYWKLPFLPLATSSDMVEFVVLDVEPVDPHELRHVHVGPVA 121
Query: 246 -----------VASTE---------NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIE 285
VA E NDT RTHLG +L GD GYDL A +
Sbjct: 122 TSGRGCKSKFVVADVEVARESDFGVNDTTFHVRTHLGVVLSAGDTVKGYDLSTAIFGSSQ 181
Query: 286 LENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEE 345
K + PD + ++K Y +N +HRK + KLK L G A+ ++ +E E
Sbjct: 182 TYTLKEEL-PDVVLVRKVYPREN--RHRKGD-RKLKTLGASRRGKVSKAETARMEHEMEV 237
Query: 346 FLRDLM 351
F + +
Sbjct: 238 FTEEFL 243
>gi|429964781|gb|ELA46779.1| hypothetical protein VCUG_01738 [Vavraia culicis 'floridensis']
Length = 444
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 86/393 (21%), Positives = 159/393 (40%), Gaps = 108/393 (27%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PKIKLKLTV 63
++SCCKCGI+++ N NMC C +E+DITE ++ + C PK + L
Sbjct: 15 SISCCKCGISILPNCLNMCTRCRSAEIDITEGIKLSYAVESCKKCNRYLLPPKKWIVLEN 74
Query: 64 QKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTG-------------------------- 97
+ ++L +++ ++ RN+ V+ GF +T
Sbjct: 75 ETDLLSFLLLRHKEI---RNLNIVD--SGFKKTEEHSRRIILELEIAKDELRCNIDVVFK 129
Query: 98 ------PD--------HWDAAVQL--------------ELIQKHDAPARATKIKKMDHGI 129
PD +W + VQ+ + I KH + T IK+ GI
Sbjct: 130 IRNKQCPDCDKMEAKQYWTSIVQIRQRSKSKRTFLYLEQSILKHKMYKKCTNIKERKDGI 189
Query: 130 EFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL- 188
+F++ R A + V F+ + + +L++ + K K++ SVEI + +L
Sbjct: 190 DFYYLDRHSACEMVNFLEGAIGTKLLVSNRLMTEDRNNNKMKYKFSYSVEIFPLCKDDLV 249
Query: 189 ---------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW--RSPFKALHTSRQLV 237
N+ ++ KV+ I L+DP + + + +W R F + TS+ L
Sbjct: 250 VLSEEFAKKRNISRLMLVLKVSRRITLVDPVSSKTIDITNKCFWSNRECFNVVMTSKDLT 309
Query: 238 EYIVLDVK----------------------VASTENDTILSTRTHLGHLLILGDYAIGYD 275
+ V +V+ + E + + ++HLG +L D GYD
Sbjct: 310 LFRVTEVERDYRQAFGTVETDKWGFKSVDCFVTREYNNDVHCKSHLGSILNEDDEIYGYD 369
Query: 276 LHEANQNDIELENYKSLVPPDTIKIKKSYKEKN 308
L N + I+ + +K+++ ++K+YK N
Sbjct: 370 LGNCNLHFIDRDLFKAIL------VRKNYKNLN 396
>gi|154418247|ref|XP_001582142.1| NMD3 family protein [Trichomonas vaginalis G3]
gi|121916375|gb|EAY21156.1| NMD3 family protein [Trichomonas vaginalis G3]
Length = 458
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 83/373 (22%), Positives = 144/373 (38%), Gaps = 112/373 (30%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CGI + N SNMCV CL+ I++ L + ++ C
Sbjct: 11 IPCCICGIMIEPNPSNMCVDCLQKNYSISDKLPQSLSVNYCRGCGRYQENKNHWINAPLE 70
Query: 56 ---------------------------------KIKLKLTVQKEVLEGVIVEQSDVVMSR 82
+I+++LT++ E V + QS V+++
Sbjct: 71 SPELLKICLSRLTNVKDAKIVDAKFLYTEPHSRRIRVELTLESVTPENVTLRQS-VIVTY 129
Query: 83 NITCVNLVPGFMQTGPD---------HWDAAVQL--------------ELIQKHDAPARA 119
+T +Q PD HW++ VQL + I ++A
Sbjct: 130 VVT--------LQQCPDCQEAATPRAHWNSNVQLRQAGNSKRLLFWIEQQILTYNAHEGC 181
Query: 120 TKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVE 179
T + ++ G++F + ++ A K V FV +P ++ +L+S +S +++ V
Sbjct: 182 TGVVRVSDGLDFHYPDKAGAGKLVNFVKSKIPILTKESGKLLSEDFQSMTADVRFSFLVR 241
Query: 180 ISAISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFK 228
+ +S +L GN + K++ I L+DPFT R +DA +W+ PF+
Sbjct: 242 LPPMSRQDLIVLPKEIVSANGNHSHVALVHKISKIIRLVDPFTGRFIDIDAITFWKKPFE 301
Query: 229 ALHTSRQLVEYIVLDVK---------------VASTENDTI---LSTRTHLGHLLILGDY 270
+ L ++VL+V+ V T+ +T RTHLG L G
Sbjct: 302 PVFVHEDLKRFVVLNVEHIDTNDRDCRFDMADVEITDEETYEDRFIVRTHLGGKLREGFV 361
Query: 271 AIGYDLHEANQND 283
+ YD N D
Sbjct: 362 VLCYDRRITNIPD 374
>gi|305380505|gb|ADM49027.1| nonsense-mediated protein [Talaromyces pinophilus]
Length = 232
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 88/177 (49%), Gaps = 29/177 (16%)
Query: 199 KVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK------------- 245
+V SI+LLDP TL+ + A YWR PFK L ++LVE++V+D++
Sbjct: 2 RVGTSISLLDPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGESKGRFFLAE 61
Query: 246 --VASTE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQND------IELENYKSLV 293
VA ND TRTHLG +L +GD +GY L N ND E Y S +
Sbjct: 62 ITVARASEMGVNDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQESSQYGSTI 121
Query: 294 PPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
PD + ++K Y K + K R KLK + E + D E++ ++E FLRD+
Sbjct: 122 -PDVVLVRKYYARKKKPKSRN---WKLKRMNYEEEEPGRKQDAERLEADFEMFLRDI 174
>gi|123974840|ref|XP_001330128.1| NMD3 family protein [Trichomonas vaginalis G3]
gi|121896049|gb|EAY01212.1| NMD3 family protein [Trichomonas vaginalis G3]
Length = 438
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/392 (19%), Positives = 151/392 (38%), Gaps = 93/392 (23%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC CGI + N +NMCV C + ++ E + + I C
Sbjct: 10 IPCCICGIMIEPNPNNMCVECFRRRLNQKEGVPEQLEINYCRDCGRYQESLTHWVNAELE 69
Query: 55 ------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--MSR 82
++++++TV +E G I+ QS +V + +
Sbjct: 70 SKELLQICIKKFSPNLKIRDAKFLWTEPHSKRLRVQVTVDREDFSGTILRQSTIVTYIVK 129
Query: 83 NITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHG 128
+ C + T DHW A VQL ++I ++A + I++ G
Sbjct: 130 TVQCKTCQE--LATHRDHWKAIVQLRQHSDSKRSMFWIEQMIINNEAAKETSAIERRPDG 187
Query: 129 IEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL 188
++F F+ S A KF+ F+ ++P ++ + + + + +Y+ S+ I +IS +L
Sbjct: 188 LDFQFNDNSDAKKFISFIKSIIPVSVKNSDTVKGQDLVNMSYDIRYSYSLTIPSISREDL 247
Query: 189 -----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLV 237
G + +K+ I ++P T + LD+ + + L + +L
Sbjct: 248 VLLPKKIFESTGRQSRLCLVSKMGRQIHFVNPLTGHNFVLDSKSIFSNSIDPLISHDRLT 307
Query: 238 EYIVLDVKVASTENDTILS---------------TRTHLGHLLILGDYAIGYDLHEANQN 282
++VL S D L+ R+HLG+ + +G+ YDL +
Sbjct: 308 RFVVLSKDEISKNGDFTLADFELTDEETYGDRIVVRSHLGNTIEIGNVVNCYDLRSESFT 367
Query: 283 DIELENYKSLVPPDTIKIKKSYKEKNQRKHRK 314
D + K + I + K+ EK +++K
Sbjct: 368 DEAEKQIKKIDFERVIIVNKARDEKKNSRNKK 399
>gi|219123810|ref|XP_002182210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406171|gb|EEC46111.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 417
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 62/305 (20%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNI--TCVNLVPGFMQTGPDHWDAAVQLELIQKH 113
+ K++LTV+ E+ + V V+Q VV N C + F W A VQL +
Sbjct: 116 RWKVRLTVRTEI-QAVTVQQRVVVELHNAFRQCNDCNREFTNRT---WQALVQLRQKRSD 171
Query: 114 DAPARAT------------------KIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSR 155
DAP + KI + +G +F+F S+A F ++ V P + +
Sbjct: 172 DAPKKGLTALEMALAKNKEIRKHVLKIDAVRNGFDFYFLSLSYAQAFSAYLQRVGPMRVK 231
Query: 156 HEKQLVSRGTKSRNCKCKYT--------CSVEISAISAHNLGNL-GPFVICTKVTNSIAL 206
K+LVS+ + KYT C ++ I G L G + TKV++ + L
Sbjct: 232 TSKKLVSQDFTNNTANMKYTVVCDLVPFCKDDLVLIKKGAKGKLSGRLALVTKVSSVVHL 291
Query: 207 LDPFTLRHCYLDA------DQYWRSP--FKALHTSRQLVEYIVLDVKVASTE-------- 250
+D R LD+ D Y++ + L S + + ++VLDV +
Sbjct: 292 MDSSPKREALLDSQMELSPDAYYKQEKLYTILQASNRTIPFVVLDVDLLENSVEKYCLAD 351
Query: 251 -----------NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELEN--YKSLVPPDT 297
ND + + THLGHL+ GD +GYDL D E+E + S V PD
Sbjct: 352 VQVARQSDFGVNDEVFNCVTHLGHLIRPGDVVMGYDLVATVGGDWEVEESLHNSFVLPDV 411
Query: 298 IKIKK 302
+ +KK
Sbjct: 412 VLVKK 416
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITP 53
+ CC CG+ NA+N C +CL E D+ LQ+ + P
Sbjct: 12 IPCCLCGVLTAPNAANQCASCLAQEFDLKGRLQRGPSGAP 51
>gi|303390779|ref|XP_003073620.1| nonsense-mediated mRNA decay protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302767|gb|ADM12260.1| nonsense-mediated mRNA decay protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 422
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 162/389 (41%), Gaps = 92/389 (23%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK-------- 56
+ CCKCGI + NMC CL +EV I+ ++++ + C PK
Sbjct: 2 ILCCKCGILIEPRLMNMCDRCLVTEVTISSKVKRNLVVERCRGCERYLQPPKSWEGFSWG 61
Query: 57 ---IKLKLTVQKEVLEGVIVEQSDVVM----SRNITC--------------VNLVPGFMQ 95
+ L L + + L G+ + S+ V S+ I + V MQ
Sbjct: 62 SKELLLFLIKKNKTLNGLCIVDSNFVYTEPNSKRIVVALTVSECGVEQPLEIKYVIKNMQ 121
Query: 96 T-------GPDHWDAAVQLE--------------LIQKHDAPARATKIKKMDHGIEFFFS 134
W++ VQ+ L+ K++A + IK+ G++F++
Sbjct: 122 CSDCAKVEAKQFWNSLVQVRHRGRHKRMMIYLEHLVLKNNAYGDTSNIKQRKEGLDFYYI 181
Query: 135 GRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS---------- 184
R+ A + V F+ V+P +++ ++L+S+ + C K++ SVEI+ +
Sbjct: 182 DRNAASRMVSFLQSVLPVKTKVSERLISKDVHTSKCNYKFSYSVEIAPLCKDDLVVVGRS 241
Query: 185 -AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW--RSPFKALHTSRQLVEYIV 241
+ +LG +G V+ K+ SI L D ++ + YW + FK L +S+ +Y V
Sbjct: 242 LSQSLG-IGSLVLVQKIATSIVLFDVGLMKSVRIAGSFYWSNQDEFKVLMSSKDFTKYSV 300
Query: 242 -----------LDVKVASTENDTILS-TRTHLGHLLILGDYAIGYDLHEANQNDIELENY 289
+ + T + ++ S R HLG++ D +GYDL N +E E
Sbjct: 301 VMRDERRRKGGIGYDLTVTSDGSVFSEARFHLGNVE-EDDEILGYDLRHLNLT-VECEEK 358
Query: 290 KSLV-----PPDTIKIKKSYKEKNQRKHR 313
+V P D + K +++Q ++R
Sbjct: 359 PEVVLVRKMPRDDVVWKIDVPQESQMEYR 387
>gi|305380491|gb|ADM49021.1| nonsense-mediated protein [Talaromyces purpurogenus]
Length = 186
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 27/172 (15%)
Query: 203 SIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK---------------VA 247
SI+LLDP TL+ + + YWR PFK L ++LVE++V+D++ VA
Sbjct: 1 SISLLDPTTLQTADVPSAVYWRQPFKNLADVQELVEFVVMDIEPVGESKGRFFLAEITVA 60
Query: 248 STE----NDTILSTRTHLGHLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTI 298
ND TRTHLG +L +GD +GY L N ND I+ N PD +
Sbjct: 61 RASEMGVNDNTYFTRTHLGGVLHVGDSVLGYHLTGTNFNDPNFDAIQESNQYGSTIPDVV 120
Query: 299 KIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
++K Y K + K R KL+ + +E + D +++ ++E FLRD+
Sbjct: 121 LVRKYYARKKKPKSRN---WKLRRMALEEEEPARKQDADRLEADFEMFLRDI 169
>gi|357481881|ref|XP_003611226.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355512561|gb|AES94184.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 406
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 19/131 (14%)
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI----- 180
D G+ F F+ S A V + +++P++ R ++ + C + SVEI
Sbjct: 105 DEGLSFCFNSLSDATDVVNLIVDILPSKVRLNMNMIPPEER-----CIF--SVEIVPICC 157
Query: 181 -------SAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
S I+A N+GP VICT+V LLDPFTL HC+L A QYW +PF +
Sbjct: 158 GDLIILPSHIAASFGPNIGPIVICTRVAKIFTLLDPFTLTHCFLKAGQYWDAPFTPSFSR 217
Query: 234 RQLVEYIVLDV 244
QLVEY+VL +
Sbjct: 218 PQLVEYVVLGI 228
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 28/116 (24%)
Query: 235 QLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP 294
+L + +V VK N T +THLG +L GD+A+GYDL + + +P
Sbjct: 275 RLADAMVARVKDIGNNNHTTFQIKTHLGRILKPGDHALGYDLSSGGVD--------TNLP 326
Query: 295 PDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ K SY E+ + + A ++K ++Y+ FL+DL
Sbjct: 327 AAILITKISYAEE--------------------ENGRVVAVQDKWESDYQLFLKDL 362
>gi|147852319|emb|CAN82227.1| hypothetical protein VITISV_011876 [Vitis vinifera]
Length = 359
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 49/74 (66%)
Query: 242 LDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIK 301
+D+ +NDTI + THLGH L GDYA+GYDL+ AN ND+ELE Y+ V PD I IK
Sbjct: 42 VDITEDFGKNDTIFNIPTHLGHYLNPGDYALGYDLYAANSNDMELEKYRYFVLPDAILIK 101
Query: 302 KSYKEKNQRKHRKP 315
K Y E QRK KP
Sbjct: 102 KIYVENCQRKGGKP 115
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP 55
M Q + +F TV CCKCGI +V NA++MCV CL SEVDITE K+ I P
Sbjct: 1 MAQESSMFRGHPTVGRVLCCKCGIPIVPNAASMCVKCLSSEVDITEDFGKNDTIFNIP 58
>gi|357481849|ref|XP_003611210.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355512545|gb|AES94168.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 669
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 68/131 (51%), Gaps = 19/131 (14%)
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEI----- 180
D G+ F F+ S A V + +++P++ R ++ + C + SVEI
Sbjct: 50 DEGLSFCFNSLSDATDVVNLIVDILPSKVRLNMNMIPPEER-----CIF--SVEIVPICC 102
Query: 181 -------SAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
S I+A N+GP VICT+V LLDPFTL HC+L A QYW +PF +
Sbjct: 103 GDLIILPSHIAASFGPNIGPIVICTRVAKIFTLLDPFTLTHCFLKAGQYWDAPFTPSFSR 162
Query: 234 RQLVEYIVLDV 244
QLVEY+VL +
Sbjct: 163 PQLVEYVVLGI 173
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 28/116 (24%)
Query: 235 QLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVP 294
+L + +V VK N T +THLG +L GD+A+GYDL + + +P
Sbjct: 220 RLADAMVARVKDIGNNNHTTFQIKTHLGRILKPGDHALGYDLSSGGVD--------TNLP 271
Query: 295 PDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+ K SY E+ + + A ++K ++Y+ FL+DL
Sbjct: 272 AAILITKISYAEE--------------------ENGRVVAVQDKWESDYQLFLKDL 307
>gi|305380527|gb|ADM49037.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 193
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 85/170 (50%), Gaps = 29/170 (17%)
Query: 206 LLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK---------------VASTE 250
LLDP TL+ + A YWR PFK L ++LVE++V+D++ VA
Sbjct: 1 LLDPHTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGESKGRFFLAEITVARAS 60
Query: 251 ----NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE------NYKSLVPPDTIKI 300
ND TRTHLG +L +GD +GY L +N ND + Y S++ PD + +
Sbjct: 61 EMGVNDNTYFTRTHLGGILHVGDSVMGYHLTGSNFNDPNFDAIHESSQYGSMI-PDVVLV 119
Query: 301 KKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
+K Y K + K R KLK + E + D +++ ++E FLRD+
Sbjct: 120 RKYYARKKKPKSRN---WKLKRMNYEEEEPARKQDADRLEADFEMFLRDI 166
>gi|429962045|gb|ELA41589.1| hypothetical protein VICG_01337 [Vittaforma corneae ATCC 50505]
Length = 415
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 136/350 (38%), Gaps = 77/350 (22%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIK--------------- 58
+ CCKCGI + N ++C CL +E D+T S++ I C K
Sbjct: 2 IHCCKCGIEIEPNMRSICFRCLNNETDVTRSIKTSMAIETCRGCKRYFFPSKGWKVLSWG 61
Query: 59 -----LKLTVQKEVLEGVIVEQSDVVMSR-------------------------NITCVN 88
+ L + + L+G+ + S+ V + N+T +
Sbjct: 62 SQDLLIFLLGRNKSLKGLNIVDSNFVYTEEHSMRMIVEIKVAQDGIEQSCMLRYNVTNMQ 121
Query: 89 LVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFS 134
+W A VQL +LI KH A A+ IK+ GI+F++
Sbjct: 122 CTNCMRTEAKQYWKALVQLRQRPHHKRTFLYIEQLILKHKAHLPASNIKERKDGIDFYYL 181
Query: 135 GRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGP- 193
R AV V+F+ + + +L+S + K+T SVEI +L LGP
Sbjct: 182 DRQDAVHMVDFLSSYCGTRVINSSRLISEDESNNTANKKFTFSVEILPFCKDDLVYLGPG 241
Query: 194 -------FVICTKVTNSIALLDPFTLRHCYLDADQYWRS--PFKALHTSRQLVEYIVLDV 244
F + ++V +++ DP T + L + QY+ + FK L S +Y V+
Sbjct: 242 NMLGLGNFALVSRVGSTVTFFDPVTQKSNKLYSKQYYSNEDKFKILMRSCNFKKYRVVYC 301
Query: 245 KVASTENDTILSTRTHL------GHLLILGDYAI-GYDLHEAN-QNDIEL 286
+ E T L HL I D + GY+L +N DI+L
Sbjct: 302 RPLGNELYEATLTADDLKFFDVTTHLKIKDDDTVAGYNLEGSNLATDIDL 351
>gi|350591690|ref|XP_003483314.1| PREDICTED: 60S ribosomal export protein NMD3-like [Sus scrofa]
Length = 273
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 38/181 (20%)
Query: 158 KQLVSRGTKSRNCKCKYTCSVEISAIS-----------AHNLGNLGPFVICTKVTNSIAL 206
++L+S+ S K T SVEI I A +LGN+ +C +VT+ I L
Sbjct: 93 QRLISQDIHSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMNQICVCIRVTSVIHL 152
Query: 207 LDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV---------------------- 244
+DP TL+ +D + +W PF +L +QL E+IV++
Sbjct: 153 IDPNTLQVADIDGNTFWTHPFNSLCHPKQLEEFIVMECSIVRDLKRSAGAGMISKKHTLG 212
Query: 245 -----KVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIK 299
K + D RTHLGHLL GD +G+DL N ND + KS PD ++
Sbjct: 213 EVWVQKTSEMNTDKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMKSDRIPDVVR 272
Query: 300 I 300
+
Sbjct: 273 L 273
>gi|449330246|gb|AGE96506.1| non sense mediated mRNA decay protein 3 [Encephalitozoon cuniculi]
Length = 424
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 138/356 (38%), Gaps = 94/356 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK-------- 56
+ CCKCGI + NMC CL +EV I+ ++++ + C PK
Sbjct: 2 ILCCKCGIPIEPRLMNMCDRCLVTEVTISSKVKRNLAVERCRGCERYLHPPKSWMEFSWG 61
Query: 57 ---IKLKLTVQKEVLEGVIVEQSDVVMS----------------------------RNIT 85
L L + + L G+ + S+ V + RN+
Sbjct: 62 SKEFLLFLIRRNKTLNGLCIVDSNFVYTEPNSKRIVVALVVRECGVEQPLEMRYVIRNMQ 121
Query: 86 CVNLVPGFMQTGPDHWDAAVQLE--------------LIQKHDAPARATKIKKMDHGIEF 131
C + W++ VQ+ L+ K++ + IK+ G++F
Sbjct: 122 CPDCAK---VEAKQFWNSLVQVRHKAGHRRMFIYLEHLVLKNNVYGDTSNIKQRKEGLDF 178
Query: 132 FFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLG-- 189
++ R+ AV+ V F+ V+P + + ++L+S+ + C K++ SVEI+ + +L
Sbjct: 179 YYIERNAAVRMVSFLQSVLPVRVKVSERLISKDVHTSKCNYKFSHSVEIAPLCKDDLVVV 238
Query: 190 --------NLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW--RSPFKALHTSRQLVEY 239
+G I K+ I LLD ++ + YW + K L +S+ +Y
Sbjct: 239 GKDVRRSLGIGSLAIVQKIATGIVLLDARLMKSVKITGSFYWNNQDGLKVLMSSKDFTKY 298
Query: 240 IVL---------------DVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEAN 280
V+ D+ V S + R HLG++ D +GYDL N
Sbjct: 299 TVVMKCCRRRAGGAMDGYDLTVTS-DGSEFSEARFHLGNVE-EDDEILGYDLRHLN 352
>gi|85014391|ref|XP_955691.1| nonsense-mediated mRNA decay protein [Encephalitozoon cuniculi
GB-M1]
gi|19171385|emb|CAD27110.1| NON SENSE MEDIATED mRNA DECAY PROTEIN 3 [Encephalitozoon cuniculi
GB-M1]
Length = 424
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 138/356 (38%), Gaps = 94/356 (26%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PK-------- 56
+ CCKCGI + NMC CL +EV I+ ++++ + C PK
Sbjct: 2 ILCCKCGIPIEPRLMNMCDRCLVTEVTISSKVKRNLAVERCRGCERYLHPPKSWMEFSWG 61
Query: 57 ---IKLKLTVQKEVLEGVIVEQSDVVMS----------------------------RNIT 85
L L + + L G+ + S+ V + RN+
Sbjct: 62 SKEFLLFLIRRNKTLNGLCIVDSNFVYTEPNSKRIVVALVVRECGVEQPLEMRYVIRNMQ 121
Query: 86 CVNLVPGFMQTGPDHWDAAVQLE--------------LIQKHDAPARATKIKKMDHGIEF 131
C + W++ VQ+ L+ K++ + IK+ G++F
Sbjct: 122 CPDCAK---VEAKQFWNSLVQVRHRAGHRRMFIYLEHLVLKNNVYGDTSNIKQRKEGLDF 178
Query: 132 FFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLG-- 189
++ R+ AV+ V F+ V+P + + ++L+S+ + C K++ SVEI+ + +L
Sbjct: 179 YYIERNAAVRMVSFLQSVLPVRVKVSERLISKDVHTSKCNYKFSHSVEIAPLCKDDLVVV 238
Query: 190 --------NLGPFVICTKVTNSIALLDPFTLRHCYLDADQYW--RSPFKALHTSRQLVEY 239
+G I K+ I LLD ++ + YW + K L +S+ +Y
Sbjct: 239 GKDVRRSLGIGSLAIVQKIATGIVLLDARLMKSVKITGSFYWNNQDGLKVLMSSKDFTKY 298
Query: 240 IVL---------------DVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEAN 280
V+ D+ V S + R HLG++ D +GYDL N
Sbjct: 299 TVVMKCCRRRAGGAMDGYDLTVTS-DGSEFSEARFHLGNVE-EDDEILGYDLRHLN 352
>gi|224151557|ref|XP_002337118.1| predicted protein [Populus trichocarpa]
gi|222838312|gb|EEE76677.1| predicted protein [Populus trichocarpa]
Length = 165
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 75/164 (45%), Gaps = 59/164 (35%)
Query: 1 MVQAAGIFAVRKTVS---CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-- 55
M + AG+F V +T+ CCKCGI M NA+NMCV CL+SEVDITE L+K+ + CP
Sbjct: 1 MAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCPEC 60
Query: 56 --------------------------------------------------KIKLKLTVQK 65
+IKL++ VQK
Sbjct: 61 DTYLDPPSTRIRAQLESRELMAFCLKKLKLKSTGVILVNAEFIWTEPHSKRIKLRVRVQK 120
Query: 66 EVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL 107
EVL G I+EQ+ V+ + ++ C + +Q PD W A VQL
Sbjct: 121 EVLHGAILEQAYVIEYVQQDQMCDSCTR--VQANPDQWVAGVQL 162
>gi|300176472|emb|CBK23783.2| unnamed protein product [Blastocystis hominis]
Length = 454
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 53/246 (21%)
Query: 101 WDAAVQL---------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEF 145
W+A VQ+ ELI+ H + ++ + G++F+F A FVE+
Sbjct: 122 WEAVVQIRQRAEHKKTLFWLEQELIKNHRYED-SLSLEIVSGGLDFYFYKLKEAQSFVEY 180
Query: 146 VGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLG---------PFVI 196
V +V ++ KQL K+ +++ +E+ ++ ++L L PFV+
Sbjct: 181 VKSIVATSQKYSKQLHGTDQKNHVAWYRHSFYLEVPSVCKNDLVILPRSCACDLAVPFVL 240
Query: 197 CTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVKV---------- 246
CT++T++++ + P + + + Y + PF L S L E+ VLDV++
Sbjct: 241 CTRITSNLSFVQPTSGKVVTVSGTSYSKHPFNPLLNSNHLKEFTVLDVQLDHPSQRTNRE 300
Query: 247 ASTENDTILS------------------TRTHLGHLLILGDYAIGYDLHEANQNDIELEN 288
+ EN+ ++ R+HL +L G +GYDL + N+ E E
Sbjct: 301 ITEENNIVMGDVEVIRSDDFGVSNETIIVRSHLCGVLEPGMLVMGYDLRRSALNNDEYEK 360
Query: 289 YKSLVP 294
Y L+P
Sbjct: 361 YADLLP 366
>gi|305380559|gb|ADM49052.1| nonsense-mediated protein [Talaromyces sp. LCP 4224]
Length = 222
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 81/168 (48%), Gaps = 29/168 (17%)
Query: 208 DPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK---------------VASTE-- 250
DP TL+ + A YWR PFK L ++LVE++V+D++ VA
Sbjct: 1 DPNTLQTAEVPAPVYWRQPFKNLADVQELVEFVVMDIEPVGESKGRFFLAEITVARASEM 60
Query: 251 --NDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELE------NYKSLVPPDTIKIKK 302
ND TRTHLG +L +GD +GY L N ND + Y S + PD + ++K
Sbjct: 61 GINDNSYFTRTHLGGVLHVGDSVMGYHLTGTNFNDPNFDAIQESSQYGSTI-PDVVLVRK 119
Query: 303 SYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
Y K + K R KLK + E + D E++ ++E FLRD+
Sbjct: 120 FYARKKKGKSRN---WKLKRMNYEEEEPGRKQDAERLEADFEMFLRDI 164
>gi|361127637|gb|EHK99598.1| putative 60S ribosomal export protein NMD3 [Glarea lozoyensis
74030]
Length = 352
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 31/170 (18%)
Query: 207 LDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK---------------VAST-- 249
L+ L+H + A YWR+PF L ++LVE+IV+D++ VA
Sbjct: 128 LEQLILKHD-ISAPIYWRAPFSTLADVQELVEFIVMDIEPIGGQKGKWLLAEATVARASD 186
Query: 250 --ENDTILSTRTHLGHLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKK 302
ND TRTHLG++L GD +GY L N N +E N S PD + +KK
Sbjct: 187 LGSNDKTYYTRTHLGNVLHPGDSVMGYMLTGTNFNSPQYDALEESNTYSSQIPDVLLVKK 246
Query: 303 SYKEKNQRKHRKPNPPKLKPLEMEVDGSKC--GADREKVNNEYEEFLRDL 350
Y K + K+R +LK + + DG AD+EK++N+YE FLRD+
Sbjct: 247 FYARKRKSKNRN---WRLKRMNRD-DGDLLPKKADQEKLDNDYEMFLRDV 292
>gi|413951252|gb|AFW83901.1| hypothetical protein ZEAMMB73_498519 [Zea mays]
Length = 452
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 114/270 (42%), Gaps = 59/270 (21%)
Query: 95 QTGPDHWDAAVQLELIQKHDAPARATKIKKM-----------------DHG---IEFFFS 134
Q PD W A VQ+ + R T M D G ++
Sbjct: 137 QADPDRWPAVVQVRQRASTSSSCRRTLNHVMSLLVCYRGNDSLLRVDWDAGAGVLDVHVV 196
Query: 135 GRSHAVKFVEFVGEVVPAQS-RHEKQLVSRGTKSRNCKCKYTCSVEISAI---------- 183
R+HA +FV FV V PA+ ++LVSR + + + SV+I +
Sbjct: 197 SRAHAARFVRFVSTVAPARVVGTARRLVSRDGEGSPYRLHFI-SVDICPVCEDDLVLLHA 255
Query: 184 -SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVL 242
++ LG LGP V+C KVT+S+ALLD +R + + R + L +LVEY+VL
Sbjct: 256 EASRALGRLGPLVLCIKVTSSLALLDTGNMRVVVVGVEACERFRIQPLLDRGRLVEYVVL 315
Query: 243 DVK---------------------VASTE----NDTILSTRTHLGHLLILGDYAIGYDLH 277
V+ V S++ + +++ +THLG+ L G +A+GYDL
Sbjct: 316 GVQHDPSGHVAALGASFMMSWAQVVRSSDVGKKDAAVITVKTHLGYDLEPGCHALGYDLS 375
Query: 278 EANQNDIELENY-KSLVPPDTIKIKKSYKE 306
+ LE Y K P + ++ Y +
Sbjct: 376 GDDVFGHGLEKYGKRHTLPAAVLTRRYYDD 405
>gi|305380531|gb|ADM49039.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 161
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 29/154 (18%)
Query: 222 YWRSPFKALHTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLG 262
YWR PFK L ++LVE++V+D++ VA ND TRTHLG
Sbjct: 1 YWRQPFKNLADVQELVEFVVMDIEPVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLG 60
Query: 263 HLLILGDYAIGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
+L +GD +GY L +N ND + Y S++ PD + ++K Y K + K R
Sbjct: 61 GILHVGDSVMGYHLTGSNFNDPNFDAIHESSQYGSMI-PDVVLVRKYYARKKKPKSRN-- 117
Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
KLK + E + D +++ ++E FLRD+
Sbjct: 118 -WKLKRMNYEEEEPARKQDADRLEADFEMFLRDI 150
>gi|305380540|gb|ADM49043.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 186
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 29/154 (18%)
Query: 222 YWRSPFKALHTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLG 262
YWR PFK L ++LVE++V+D++ VA ND TRTHLG
Sbjct: 9 YWRQPFKNLADVQELVEFVVMDIEPVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLG 68
Query: 263 HLLILGDYAIGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPN 316
+L +GD +GY L +N ND + Y S++ PD + ++K Y K + K R
Sbjct: 69 GILHVGDSVMGYHLTGSNFNDPNFDAIHESSQYGSMI-PDVVLVRKYYARKKKPKSRN-- 125
Query: 317 PPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
KLK + E + D +++ ++E FLRD+
Sbjct: 126 -WKLKRMNYEEEEPARKQDADRLEADFEMFLRDI 158
>gi|305380494|gb|ADM49022.1| nonsense-mediated protein [Talaromyces purpurogenus]
Length = 170
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 27/153 (17%)
Query: 222 YWRSPFKALHTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLG 262
YWR PFK L ++LVE++V+D++ VA ND TRTHLG
Sbjct: 7 YWRQPFKNLADVQELVEFVVMDIEPVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLG 66
Query: 263 HLLILGDYAIGYDLHEANQND-----IELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
+L +GD +GY L N ND I+ N PD + ++K Y K + K R
Sbjct: 67 GVLHVGDSVLGYHLTGTNFNDPNFDAIQESNQYGSTIPDVVLVRKYYARKKKPKSRN--- 123
Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
KL+ + +E + D +++ ++E FLRD+
Sbjct: 124 WKLRRMALEEEEPARKQDADRLEADFEMFLRDI 156
>gi|444705851|gb|ELW47238.1| 60S ribosomal export protein NMD3 [Tupaia chinensis]
Length = 360
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 86/213 (40%), Gaps = 54/213 (25%)
Query: 217 LDADQYWRSPFKALHTSRQLVEYIVLDV---------------------------KVAST 249
+D +W PF +L +QL E+IV++ K +
Sbjct: 151 IDGSTFWSHPFNSLCHPKQLEEFIVMECSIVQNLKRSAGAGMISKKHTLGEVWVQKTSEM 210
Query: 250 ENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQ 309
D RTHLGHLL GD +G+DL N ND + S PD + IKKSY ++ +
Sbjct: 211 STDKQYFCRTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSY-DRTK 269
Query: 310 RKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL------------------- 350
R+ R+ K E+ D D E+ +Y++FL DL
Sbjct: 270 RQRRR----NWKLKELARDRENMDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSSIP 322
Query: 351 MASVTDKEDVPSVPLDYLLADLDSSDKEEGDDS 383
+ S TD E P + L +L DL S G++
Sbjct: 323 VESDTDDEGAPRISLAEMLEDLHISQDATGEEG 355
>gi|402470838|gb|EJW04876.1| hypothetical protein EDEG_00946 [Edhazardia aedis USNM 41457]
Length = 456
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 124/281 (44%), Gaps = 58/281 (20%)
Query: 108 ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKS 167
+++ K +A T IK+ GI+F+F ++ A+K V F+ + + ++L+S KS
Sbjct: 187 QVLLKSEAYKETTNIKERRDGIDFYFQSKNPALKLVSFIKSRFICRVKISERLLSEDKKS 246
Query: 168 RNCKCKYTCSVEISAISAH----------NLGNLGPFVICTKVTNSIALLDPFTLRHCYL 217
K K++ S+E++ I N + TKV ++I L+DP T + +
Sbjct: 247 NTSKYKFSYSIELAPICKDDVIKVSERIANKYGINQINTVTKVNSNIKLIDPITNKLTEI 306
Query: 218 DADQYW--RSPFKALHTSRQLVEYIVLDV----KV-----------ASTENDTILSTRTH 260
D YW F+ L +SR L ++ V+++ KV S +N+ +TH
Sbjct: 307 DNRNYWGYLDEFEILMSSRSLKKFKVVEIIDTCKVDSDQNILTNLYVSCDNNINYHCKTH 366
Query: 261 LGHLLILGDYAIGYDL-HEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPK 319
L ++ D +GY+ H Q+D++ +K + ++ RK N K
Sbjct: 367 LKNIK-ENDIVLGYNFDHSWKQDDVD---FKVFIVRKEVQ-------------RKKNNLK 409
Query: 320 LKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDV 360
+ + K ++EY+ F++D++ KED+
Sbjct: 410 IHT-------------KHKKDDEYDLFMQDIIMDDELKEDI 437
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 1 MVQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
V A + + CCKCGI + NMC C+ +E+DIT S++K+ + C
Sbjct: 21 FVNLIKFIAQKMKIICCKCGIDIEPRLMNMCDICISTEIDITSSIKKNDIVQHC 74
>gi|383173831|gb|AFG70428.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|383173832|gb|AFG70429.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|383173833|gb|AFG70430.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|383173834|gb|AFG70431.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|383173835|gb|AFG70432.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|383173836|gb|AFG70433.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
Length = 138
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 51/115 (44%), Gaps = 51/115 (44%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------------- 55
CC CGI+M NA+NMCV C++++VDITE LQKH I CP
Sbjct: 2 CCMCGISMPPNAANMCVNCIRTQVDITEGLQKHVTILHCPECNSYLQPPKTWIKAQLESK 61
Query: 56 -------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+KL +QKEVL G I+EQ+ VV
Sbjct: 62 ELLTFCIKRLKNLNKVRLVHAEFIWTEPHSKRIKVKLRIQKEVLNGAILEQAYVV 116
>gi|361066975|gb|AEW07799.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
gi|361066977|gb|AEW07800.1| Pinus taeda anonymous locus 0_11808_01 genomic sequence
Length = 138
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 51/115 (44%), Gaps = 51/115 (44%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------------- 55
CC CGI+M NA+NMCV C++++VDITE LQKH I CP
Sbjct: 2 CCMCGISMPPNAANMCVNCIRTQVDITEGLQKHVTILHCPECNSYLQPPKTWIKAQLESK 61
Query: 56 -------------------------------KIKLKLTVQKEVLEGVIVEQSDVV 79
+IK+KL +QKEVL G I+EQ+ VV
Sbjct: 62 ELLTFCIKRLKNLNKVRLVHAEFIWTEPHSKRIKVKLRIQKEVLNGAILEQAYVV 116
>gi|195560672|ref|XP_002077421.1| GD13524 [Drosophila simulans]
gi|194202532|gb|EDX16108.1| GD13524 [Drosophila simulans]
Length = 218
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 86/219 (39%), Gaps = 70/219 (31%)
Query: 30 MCVTCLKSEVDITESLQKHANITPC----------------------------------- 54
MCVTCL++ VDITE++ K A + C
Sbjct: 1 MCVTCLRNHVDITENIPKQAVLHFCRNCERYLQPPNEWIQAALESRELLAICLKKLKGLK 60
Query: 55 ----------------PKIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQT 96
+IK+KLTV E+ G +++Q VV +N C +
Sbjct: 61 EVKLVDAGFIWTEQHSKRIKVKLTVHGEITGGTVLQQVFVVEFTVQNQMCNDC---HRTE 117
Query: 97 GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKF 142
D W VQ+ +LI KH A IK G++FF++ +HA +
Sbjct: 118 AKDFWRCLVQVRQRAENKKTFYYLEQLILKHKAHENTLGIKPEHGGLDFFYANDNHARRM 177
Query: 143 VEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
V+F+ +VP + K+L+S S N KY SVEI+
Sbjct: 178 VDFLLTMVPGKVTTSKRLISHDIHSNNYNYKYNWSVEIA 216
>gi|305380535|gb|ADM49041.1| nonsense-mediated protein [Talaromyces funiculosus]
Length = 171
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 29/150 (19%)
Query: 226 PFKALHTSRQLVEYIVLDVK---------------VASTE----NDTILSTRTHLGHLLI 266
PFK L ++LVE++V+D++ VA ND TRTHLG +L
Sbjct: 2 PFKNLADVQELVEFVVMDIEPVGESKGRFFLAEITVARASEMGVNDNTYFTRTHLGGILH 61
Query: 267 LGDYAIGYDLHEANQNDIELE------NYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKL 320
+GD +GY L +N ND + Y S++ PD + ++K Y K + K R KL
Sbjct: 62 VGDSVMGYHLTGSNFNDPNFDAIHESSQYGSMI-PDVVLVRKYYARKKKPKSRN---WKL 117
Query: 321 KPLEMEVDGSKCGADREKVNNEYEEFLRDL 350
K + E + D +++ ++E FLRD+
Sbjct: 118 KRMNYEEEEPARKQDADRLEADFEMFLRDI 147
>gi|376335226|gb|AFB32304.1| hypothetical protein 0_11808_01, partial [Pinus mugo]
Length = 138
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 51/115 (44%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKI------------------ 57
CC CGI+M NA+NMCV C++++VDIT+ LQKH I CPK
Sbjct: 2 CCMCGISMPPNAANMCVNCIRTQVDITKGLQKHVTILHCPKCNSYLQPPKTWIKAQLESK 61
Query: 58 ---------------------------------KLKLTVQKEVLEGVIVEQSDVV 79
K+KL +QKEVL G I+EQ+ VV
Sbjct: 62 ELLTFCIKRLKNLNKVRLVHAKFIWTKPHSKRNKVKLRIQKEVLNGAILEQAYVV 116
>gi|349602939|gb|AEP98922.1| 60S ribosomal export protein NMD3-like protein, partial [Equus
caballus]
Length = 185
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 258 RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
RTHLGHLL GD +G+DL N ND + S PD + IKKSY ++ +R+ R+
Sbjct: 44 RTHLGHLLNPGDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSY-DRTKRQRRR--N 100
Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKE 358
KLK L E + +R +Y++FL DL + S TD E
Sbjct: 101 WKLKELPRERENMDTDDER-----QYQDFLEDLEEDEAIRKNVNVYRDSTIPVESDTDDE 155
Query: 359 DVPSVPLDYLLADLDSSDK---EEGDDSM 384
P + L +L DL S EEGD M
Sbjct: 156 GAPRISLAEMLEDLHISQDATGEEGDSMM 184
>gi|344245933|gb|EGW02037.1| Histone H3.3 [Cricetulus griseus]
Length = 365
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 67/240 (27%)
Query: 167 SRNCKCKYTCSVE-----ISAISAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQ 221
S+ K K T E +S A +LGN+ IC +VT++I L+DP TL+ +D +
Sbjct: 163 SKRLKVKLTIQKEDNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNT 222
Query: 222 YWRSPFKALHTSRQLVEYIVLDVKVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQ 281
+W PF +L +QL E+IV++ +
Sbjct: 223 FWSHPFNSLCHPKQLEEFIVMECSIV---------------------------------- 248
Query: 282 NDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNN 341
D++ ++ + IKKSY ++ +R+ R+ K E+ D D E+
Sbjct: 249 RDLKRSAGAGIISKKVL-IKKSY-DRTKRQRRR----NWKLKELARDREDMDTDDER--- 299
Query: 342 EYEEFLRDL-------------------MASVTDKEDVPSVPLDYLLADLDSSDKEEGDD 382
+Y++FL DL + S TD E P + L +L DL S G++
Sbjct: 300 QYQDFLEDLEEDEAIRKNVNIYRDSTVPVESDTDDEGAPRISLAEMLEDLHISQDATGEE 359
>gi|397570210|gb|EJK47192.1| hypothetical protein THAOC_34108 [Thalassiosira oceanica]
Length = 625
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 65/275 (23%)
Query: 105 VQLELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRG 164
V+L + + D ++ +G +F+F A FV ++ V P +++ + LVS
Sbjct: 240 VKLAIAKNGDVRRDILSVQTKRNGFDFYFPSLDKARHFVNYLQGVAPMRTKTTQSLVSAD 299
Query: 165 TKSRNCKCKYTCSVEISAI----------SAHNLGNL-GPFVICTKVTNSIALLDP---- 209
+K+ K+T + ++ + A +G L G + +V++ + L+D
Sbjct: 300 SKNNTANIKHTLNCDMVPLCRDDLIVVERKARGVGGLSGRLCLVLRVSSVVHLVDASPAR 359
Query: 210 ---FTLRHCYLDADQYWRS----PFKALHTSRQLVEYIVLDVKV---------------- 246
+ R + +D YWR ++ + ++L ++VLDV++
Sbjct: 360 DAEVSTRFADMHSDAYWRGGEDKSYRLFLSPKRLARFVVLDVELCDGGARSGKDGGGAGA 419
Query: 247 ---------ASTENDTILSTRT-----HLGHLLILGDYAIGYDL------HEANQNDIEL 286
+ E+D ++ T HLGHLL +GD +GYDL A +
Sbjct: 420 AKFALADVEVARESDFGVTDETFRCVTHLGHLLNVGDVVLGYDLVSTVLSGTAESSSEGS 479
Query: 287 ENYKSLVPPDTIKIKK-------SYKEKNQRKHRK 314
N ++P D K+KK + +K R++RK
Sbjct: 480 FNSNFVMPDDESKLKKKGGRARSAASKKRDRRNRK 514
>gi|297739634|emb|CBI29816.3| unnamed protein product [Vitis vinifera]
Length = 78
Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 27/38 (71%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANI 51
V CCKCGI A+NMCV CL SEVDI E LQKHA +
Sbjct: 36 VPCCKCGIPTAPTAANMCVNCLPSEVDIPEGLQKHATL 73
>gi|149414089|ref|XP_001507475.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Ornithorhynchus anatinus]
Length = 164
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 27/147 (18%)
Query: 245 KVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
K + D RTH+GHLL GD +G+DL N ND PD + IKKSY
Sbjct: 10 KTSEMNTDNQYFCRTHMGHLLNPGDLVLGFDLANCNLNDEFANKMNPNHVPDVVLIKKSY 69
Query: 305 KEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL-------------- 350
+++ R KLK LE + +G +R +Y++FL DL
Sbjct: 70 DRTKRQRRRN---WKLKELERDREGMDTDDER-----QYQDFLEDLEEDEAIRRNVNIYK 121
Query: 351 -----MASVTDKEDVPSVPLDYLLADL 372
+ S TD E P + L +L DL
Sbjct: 122 NLEVPVESDTDDEGAPRISLAEMLEDL 148
>gi|70953092|ref|XP_745669.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526066|emb|CAH77946.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 385
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 13/135 (9%)
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN 187
G++F F R+ A+KF +F+ A+ ++ K L++ + N Y+ S++I I H+
Sbjct: 30 GLDFHFLSRTDALKFCDFILSKTMAKCKNSKHLINHDA-NNNYNYLYSFSIDICPICKHD 88
Query: 188 L-----------GNLGPFVICTKVTNSIALLDPF-TLRHCYLDADQYWRSPFKALHTSRQ 235
L G F +C V+ I L+DPF + Y+ ++Y + PF +L
Sbjct: 89 LIFFPKNFAIKYGIKSTFYLCMHVSIYIILVDPFGAANNVYISQERYNKYPFLSLLNKND 148
Query: 236 LVEYIVLDVKVASTE 250
++VL+V+ S+E
Sbjct: 149 AKSFLVLNVEHISSE 163
>gi|294888247|ref|XP_002772404.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
gi|239876562|gb|EER04220.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
Length = 165
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 49/115 (42%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
V CC CG +M N SNMCV C+K EVDITE + K A + C
Sbjct: 27 VLCCVCGASMTPNQSNMCVNCMKGEVDITEGISKQAVVNYCRECNRYQRPPWVPCEPESR 86
Query: 55 ------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV 79
++K+KLTVQKEV+ G +++QS +V
Sbjct: 87 ELLGICLKKIKGLNKVKLVDANFIWQAPTSKRMKVKLTVQKEVMNGAVMQQSMIV 141
>gi|83032912|ref|XP_729246.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23486501|gb|EAA20811.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 938
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN 187
G++F F R+ A+KF +F+ ++ ++ K L++ + Y+ S++I I +
Sbjct: 585 GLDFHFLSRTDALKFCDFILSKTISKCKNSKHLINHDANNNTYNYLYSFSIDICPICKFD 644
Query: 188 L-----------GNLGPFVICTKVTNSIALLDPF-TLRHCYLDADQYWRSPFKALHTSRQ 235
L G F +C V+ I L+DPF + + Y+ ++Y + PF AL
Sbjct: 645 LIFFPKDFSIKYGIKSTFYLCLHVSIFIILVDPFGSAKSVYISQEKYNKYPFVALLNKSD 704
Query: 236 LVEYIVLDVKVASTENDT 253
+++L+V+ +TE ++
Sbjct: 705 AKSFLILNVEYINTEENS 722
>gi|68075207|ref|XP_679520.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56500287|emb|CAH95620.1| conserved hypothetical protein [Plasmodium berghei]
Length = 731
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN 187
G++F F R+ A+KF +F+ ++ + K L++ + Y+ S++I I ++
Sbjct: 378 GLDFHFLSRTDALKFCDFILSKTISKCKSSKHLINHDANNNTYNYLYSFSIDICPICKYD 437
Query: 188 L-----------GNLGPFVICTKVTNSIALLDPF-TLRHCYLDADQYWRSPFKALHTSRQ 235
L G F +C V+ I L+DPF + + Y+ ++Y + PF AL
Sbjct: 438 LIFFPKDFSIKYGIKSTFYLCLHVSIFIILVDPFGSAKSVYISQEKYNKYPFVALLNKSD 497
Query: 236 LVEYIVLDVKVASTENDT 253
+++L+++ +TE ++
Sbjct: 498 AKSFLILNIEYINTEENS 515
>gi|269860229|ref|XP_002649837.1| nonsense-mediated mRnA decay protein [Enterocytozoon bieneusi H348]
gi|220066778|gb|EED44250.1| nonsense-mediated mRnA decay protein [Enterocytozoon bieneusi H348]
Length = 409
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 100 HWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEF 145
W++ VQ+ +LI+ H A + IK GI+F+F ++ A++F +F
Sbjct: 133 FWNSLVQIRQHPPNPRSFLYLEQLIKIHKAHKSTSNIKDKPDGIDFYFFNKNDAIRFTKF 192
Query: 146 VGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNL-GPFVICTKVTNSI 204
+ + + +L+S K+ K T S + +L I +KV +I
Sbjct: 193 IENFYGIKIKESNRLISEDRKNNTANTKTTFSCVLMPFCKDDLVEFNNTLWIVSKVNCNI 252
Query: 205 ALL-----DPFTLRHCYLDADQYWRSPFKALHTSRQLVEY-IVLDVKVASTENDTILSTR 258
L+ D T+ Y A++ W FK + T++ L++Y +VL K N T++
Sbjct: 253 ELVNIKTGDKRTISAKYYFANEDW---FKIIQTTKDLIQYTVVLSYKSDDFYNITLMDMN 309
Query: 259 THLGHLLIL-----GDYAIGY 274
+ + L GD +GY
Sbjct: 310 EKIFEIQTLLKVDDGDTILGY 330
>gi|350591688|ref|XP_003483313.1| PREDICTED: 60S ribosomal export protein NMD3-like [Sus scrofa]
Length = 210
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 59/167 (35%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPK----------------- 56
+ CC CG+ + N +N+CV CL+S+VDI++ + K +I+ C +
Sbjct: 15 ILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 57 -----------------------------------IKLKLTVQKEVLEGVIVEQSDVV-- 79
+K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMD 126
+ ++ C + D W A VQ+ QKH PA + K+D
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVVQVR--QKHFPPASPVLLNKID 176
>gi|387594352|gb|EIJ89376.1| hypothetical protein NEQG_00146 [Nematocida parisii ERTm3]
gi|387596804|gb|EIJ94425.1| hypothetical protein NEPG_01093 [Nematocida parisii ERTm1]
Length = 495
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 101 WDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFV 146
W+ VQL + I K T IK GI+FF+ R+ +K V F+
Sbjct: 139 WNCVVQLRQKSELKQTLLLLEQSILKAGLHEECTDIKGEQDGIDFFYMSRTACLKLVRFI 198
Query: 147 GEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVT 201
E VP + + +QLV KS N + K+ SVEI A++ ++L + P +C K++
Sbjct: 199 EESVPTKVKSSEQLVKLDKKSNNSRYKFAYSVEIPALNLNDLLYV-PVPLCKKLS 252
>gi|378756769|gb|EHY66793.1| hypothetical protein NERG_00433 [Nematocida sp. 1 ERTm2]
Length = 445
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 101 WDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFV 146
W+ VQL + I K T IK GI+FF+ R+ ++K V F+
Sbjct: 139 WNCVVQLRQKCQSKQTLLLLEQAILKAGLHEETTDIKGEQDGIDFFYISRTASLKLVRFI 198
Query: 147 GEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL 188
E PA+ + +QLV KS N + K+ SVEI A++ ++L
Sbjct: 199 EEYAPAKVKISEQLVKLDKKSNNSRYKFAYSVEIPALNVNDL 240
>gi|124512110|ref|XP_001349188.1| 60S ribosomal subunit export protein, putative [Plasmodium
falciparum 3D7]
gi|23498956|emb|CAD51034.1| 60S ribosomal subunit export protein, putative [Plasmodium
falciparum 3D7]
Length = 888
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN 187
G++F F R+ A+KF +F+ ++ ++ K L++ + YT S++I I ++
Sbjct: 499 GLDFHFLSRTDALKFCDFILSKTMSKCKNSKHLINHDANNNTYNYLYTFSIDICPICKYD 558
Query: 188 L-----------GNLGPFVICTKVTNSIALLDPF-TLRHCYLDADQYWRSPFKALHTSRQ 235
L G F +C V+ I L++PF + H Y+ ++Y ++PF L +
Sbjct: 559 LIFFPKGLANKYGIKNVFYLCIHVSIFIILINPFSSANHVYVSPERYNKNPFLPLLSKAD 618
Query: 236 LVEYIVLDVK 245
+++L+++
Sbjct: 619 AKVFLILNIE 628
>gi|149628335|ref|XP_001521554.1| PREDICTED: 60S ribosomal export protein NMD3-like, partial
[Ornithorhynchus anatinus]
Length = 158
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 19/113 (16%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGPDHWDAAVQL------ 107
++K+KLT+QKEV+ G I++Q VV + ++ C + D W A VQ+
Sbjct: 49 RLKVKLTIQKEVMNGAILQQVFVVEYVVQSQMCDDC---HRVEAKDFWKAVVQVRQKTLH 105
Query: 108 --------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPA 152
+LI KH + +IK++ G++F++ + HA K V+F+ VP+
Sbjct: 106 KKTFFYLEQLILKHRVHQNSLRIKEIHDGLDFYYGSKQHAQKMVDFLQGTVPS 158
>gi|170054659|ref|XP_001863230.1| nonsense-mediated mRNA decay protein [Culex quinquefasciatus]
gi|167874917|gb|EDS38300.1| nonsense-mediated mRNA decay protein [Culex quinquefasciatus]
Length = 297
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 64/329 (19%)
Query: 31 CVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLV 90
CVTCL++ VDIT ++ K A I C + ++ +E ++++
Sbjct: 12 CVTCLRTHVDITANIPKQA-IVFCGRNWVRYLNPPSEWVQCSLESKELLVD--------- 61
Query: 91 PGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMD-HGIEFFFSGRSHAVKFVEFVGEV 149
GF+ T P H + + ++++ G E V+FV V
Sbjct: 62 AGFIWTEP--------------HSKRIKRSDVRRLSPDGGEGLL---------VDFVQAV 98
Query: 150 VPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDP 209
+P + + K+L+ S + KY+ + + S + ++C + + +
Sbjct: 99 LPVKVTNAKKLIPHDIHSNSYNYKYSYELHVVPFSKGS-------IVCLRKKAAEVPVAH 151
Query: 210 FTLRHCYLDADQYWRSPFK-ALHT-SRQLVEYIVLDVKV--------------ASTEN-D 252
++ R K +L T +VE++V D+++ S N
Sbjct: 152 LAYHQSGQSDLRFRRISLKESLETIGGHMVEFVVTDMEIDRDNKKKNFPRQGPVSFRNCP 211
Query: 253 TILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKH 312
TR HLGHLL +GD +GYDL EAN N+ N++ L K +++K K+Q
Sbjct: 212 NWAHTRAHLGHLLKVGDSVLGYDLAEANNNN---GNFEKLKLDAMHKQSRNWKLKHQVG- 267
Query: 313 RKPNPPKLKPLEMEVDGSKCGAD-REKVN 340
R + P+ L+ G + G+ R+KVN
Sbjct: 268 RAGHGPR-GGLQRVPTGPRGGSGMRQKVN 295
>gi|170058465|ref|XP_001864933.1| NMD protein [Culex quinquefasciatus]
gi|167877565|gb|EDS40948.1| NMD protein [Culex quinquefasciatus]
Length = 294
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 64/329 (19%)
Query: 31 CVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLV 90
CVTCL++ VDIT ++ K A I C + ++ +E ++++
Sbjct: 9 CVTCLRTHVDITANIPKQA-IVFCGRNWVRYLNPPSEWVQCSLESKELLVD--------- 58
Query: 91 PGFMQTGPDHWDAAVQLELIQKHDAPARATKIKKMD-HGIEFFFSGRSHAVKFVEFVGEV 149
GF+ T P H + + ++++ G E V+FV V
Sbjct: 59 AGFIWTEP--------------HSKRIKRSDVRRLSPDGGEGLL---------VDFVQAV 95
Query: 150 VPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNLGNLGPFVICTKVTNSIALLDP 209
+P + + K+L+ S + KY+ + + S + ++C + + +
Sbjct: 96 LPVKVTNAKKLIPHDIHSNSYNYKYSYELHVVPFSKGS-------IVCLRKKAAEVPVAH 148
Query: 210 FTLRHCYLDADQYWRSPFK-ALHT-SRQLVEYIVLDVKV--------------ASTEN-D 252
++ R K +L T +VE++V D+++ S N
Sbjct: 149 LAYHQSGQSDLRFRRISLKESLETIGGHMVEFVVTDMEIDRDNKKKNFPRQGPVSFRNCP 208
Query: 253 TILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKH 312
TR HLGHLL +GD +GYDL EAN N+ N++ L K +++K K+Q
Sbjct: 209 NWAHTRAHLGHLLKVGDSVLGYDLAEANNNN---GNFEKLKLDAMHKQSRNWKLKHQVG- 264
Query: 313 RKPNPPKLKPLEMEVDGSKCGAD-REKVN 340
R + P+ L+ G + G+ R+KVN
Sbjct: 265 RAGHGPR-GGLQRVPTGPRGGSGMRQKVN 292
>gi|449702985|gb|EMD43514.1| nonsense-mediated mRNA decay protein, putative [Entamoeba
histolytica KU27]
Length = 135
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 19/116 (16%)
Query: 195 VICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV---------- 244
++CT+V ++ L+D L A Q+++ PF AL S+ LVEY V++V
Sbjct: 1 MVCTQVAGTLHLVDVLKGTEVELYAHQFFQHPFDALTNSKNLVEYYVVEVTKIGKPVGQY 60
Query: 245 -----KVASTEN----DTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKS 291
++ +E+ + L +T G+ + G+ A+GYDL N N+ E+Y+
Sbjct: 61 QLADCQIIKSEDFGVTEDYLYVKTIFGNTIREGETALGYDLVNLNANNDNFESYQQ 116
>gi|307169026|gb|EFN61877.1| 60S ribosomal export protein NMD3 [Camponotus floridanus]
Length = 120
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
CC+CG + N +NMCV CL++ VDITE + K A + C
Sbjct: 12 CCECGTLIEPNPANMCVVCLRNHVDITEGIPKQATLQFC 50
>gi|300706359|ref|XP_002995452.1| hypothetical protein NCER_101641 [Nosema ceranae BRL01]
gi|239604564|gb|EEQ81781.1| hypothetical protein NCER_101641 [Nosema ceranae BRL01]
Length = 245
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 97 GPDHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKF 142
HW A VQ+ +LI K+ T IK GI+F+F+ R+ A K
Sbjct: 130 AKQHWKAVVQVRHRMEHPRIFILLEQLIIKNKQYLDTTNIKMRKGGIDFYFTDRTCAYKL 189
Query: 143 VEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHNL 188
V F+ V+P + ++L+S+ ++ K++ S+EI+ + +L
Sbjct: 190 VNFIESVLPVKIILSERLISKDIQNAKSNYKFSFSIEIAPLCTDDL 235
>gi|74226349|dbj|BAE25334.1| unnamed protein product [Mus musculus]
Length = 200
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------PKIKLKLTVQ 64
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C P ++ ++
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALE 74
Query: 65 KEVLEGVIVEQSDVVMSRNITCVNLV-PGFMQTGPDHWDAAVQLELIQKHDAPARATKIK 123
L + +++ +S+ V LV GF+ T P V+L + ++ A ++
Sbjct: 75 SRELLALCLKKIKAPLSK----VRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVF 130
Query: 124 KMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSR 155
+D+ ++ G H V+ +F V+ + +
Sbjct: 131 VVDYVVQSQMCGDCHRVEAKDFWKAVIQVRQK 162
>gi|449703243|gb|EMD43728.1| nonsense-mediated mRNA decay protein, putative [Entamoeba
histolytica KU27]
Length = 140
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 24/120 (20%)
Query: 195 VICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDVK--------- 245
++CT+V ++ L+D L A Q+++ PF AL S+ LVEY V++V
Sbjct: 1 MVCTQVAGTLHLVDVLKGTEVELYAHQFFQHPFDALTNSKNLVEYYVVEVTKIGKPVGQY 60
Query: 246 ------------VASTENDTILST---RTHLGHLLILGDYAIGYDLHEANQNDIELENYK 290
TE+ + T +T G+ + G+ A+GYDL N N+ E+Y+
Sbjct: 61 QLADCQIIKSEDFGVTEDYLYVKTIFGKTIFGNTIREGETALGYDLVNLNANNDNFESYQ 120
>gi|422294126|gb|EKU21426.1| 60s ribosomal export protein, partial [Nannochloropsis gaditana
CCMP526]
Length = 223
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 56 KIKLKLTVQKEVLEGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQLELIQKHDA 115
++KLKLTV+KEVL GV+V+Q + C + + W A QL H
Sbjct: 96 RLKLKLTVRKEVLNGVMVQQR---VQAEFVCDACALSYTEQA---WKAVCQLRQRVTHKR 149
Query: 116 P---------ARATKIKKMD-----HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLV 161
AR + K +D HG++ +F ++ A++F+ F+ VP +S+ ++L+
Sbjct: 150 TFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLI 209
Query: 162 S 162
+
Sbjct: 210 A 210
>gi|443723709|gb|ELU12007.1| hypothetical protein CAPTEDRAFT_211705, partial [Capitella teleta]
Length = 149
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 57/146 (39%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC--------------------- 54
CC+CG + N +NMCV CL+++VDI+E + K A + C
Sbjct: 4 CCQCGTQIEPNPANMCVACLRAQVDISEGIPKQAVLHFCRQCERYLQPPSCWLKAALESR 63
Query: 55 -------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV--MS 81
++K+K+T+QKEV+ G +++Q +V +
Sbjct: 64 ELLAVCLKKVKGINKEVRLVDAGFIWTEPHSKRLKVKMTIQKEVMNGAVLQQVFIVEFVV 123
Query: 82 RNITCVNLVPGFMQTGPDHWDAAVQL 107
N C + D+W A VQ+
Sbjct: 124 HNQMCEDC---HRVEAKDYWRACVQI 146
>gi|221052471|ref|XP_002257811.1| NMD3 homologue [Plasmodium knowlesi strain H]
gi|193807642|emb|CAQ38147.1| NMD3 homologue, putative [Plasmodium knowlesi strain H]
Length = 881
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN 187
G++F F R+ A+KF +F+ ++ ++ K L++ + Y+ S++I I ++
Sbjct: 532 GLDFHFLSRTDALKFCDFILSKTMSKCKNSKHLINHDANNNTYNYLYSFSIDICPICKYD 591
Query: 188 L-----------GNLGPFVICTKVTNSIALLDPF-TLRHCYLDADQYWRSPFKALHTSRQ 235
L G F +C V+ I L++PF + ++ ++Y + PF L +
Sbjct: 592 LIFFPKDLSIKYGMKSTFYLCLHVSIFIILINPFCSANSAHISQERYNKHPFLPLLSKAD 651
Query: 236 LVEYIVLDVK 245
+++L+V+
Sbjct: 652 SKVFLILNVE 661
>gi|308466664|ref|XP_003095584.1| hypothetical protein CRE_14247 [Caenorhabditis remanei]
gi|308245108|gb|EFO89060.1| hypothetical protein CRE_14247 [Caenorhabditis remanei]
Length = 379
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 1 MVQAAGIFAVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
M Q G+ A CC+ G+ + N +NMC CL+S VDITE +Q+ I C
Sbjct: 232 MKQTVGLMA------CCEYGVAIEPNPANMCSGCLRSRVDITEGIQRSCTIYMC 279
>gi|389581951|dbj|GAB64672.1| mRNA decay protein [Plasmodium cynomolgi strain B]
Length = 887
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN 187
G++F F R+ A+KF +F+ ++ ++ K L++ + Y+ S++I I ++
Sbjct: 533 GLDFHFLSRTDALKFCDFILSKTMSKCKNSKHLINHDANNNTYNYLYSFSIDICPICKYD 592
Query: 188 L-----------GNLGPFVICTKVTNSIALLDPF-TLRHCYLDADQYWRSPFKALHTSRQ 235
L G F +C V+ I L++PF + ++ ++Y + PF L +
Sbjct: 593 LIFFPKDLSIKYGIKSSFYLCLHVSIFIILINPFCSSNSAHISQERYNKHPFLPLLSKAD 652
Query: 236 LVEYIVLDVK 245
+++L+V+
Sbjct: 653 SKVFLILNVE 662
>gi|357494549|ref|XP_003617563.1| hypothetical protein MTR_5g092980 [Medicago truncatula]
gi|355518898|gb|AET00522.1| hypothetical protein MTR_5g092980 [Medicago truncatula]
Length = 119
Score = 46.2 bits (108), Expect = 0.028, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 210 FTLRHCYLDADQYWRSPFKALHTSRQLVEYIVLDV 244
FTLR+C L+ DQYW + F T QLVEY VLD+
Sbjct: 52 FTLRYCILNVDQYWNALFTPSLTRSQLVEYSVLDI 86
>gi|156095185|ref|XP_001613628.1| mRNA decay protein [Plasmodium vivax Sal-1]
gi|148802502|gb|EDL43901.1| mRNA decay protein, putative [Plasmodium vivax]
Length = 892
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 128 GIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN 187
G++F F R+ A+KF +F+ ++ ++ K L++ + Y+ S++I I ++
Sbjct: 535 GLDFHFLSRTDALKFCDFILSKTMSKCKNSKHLINHDANNNTYNYLYSFSIDICPICKYD 594
Query: 188 L-----------GNLGPFVICTKVTNSIALLDPF-TLRHCYLDADQYWRSPFKALHTSRQ 235
L G F +C V+ I L++PF + ++ ++Y + PF L +
Sbjct: 595 LIFFPKDLSIKYGMKSSFYLCLHVSIFIILINPFCSSNSAHISQERYNKHPFLPLLSKAD 654
Query: 236 LVEYIVLDVK 245
+++L+V+
Sbjct: 655 SKVFLILNVE 664
>gi|170057906|ref|XP_001864688.1| CGI-07 protein [Culex quinquefasciatus]
gi|167877198|gb|EDS40581.1| CGI-07 protein [Culex quinquefasciatus]
Length = 178
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 9 AVRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC 54
+++ + CC+CG + N SNMCV CL++ VDIT ++ K A + C
Sbjct: 16 SMKNKILCCECGTPIEPNPSNMCVACLRTHVDITANIPKQAIVFFC 61
>gi|358345174|ref|XP_003636657.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
gi|355502592|gb|AES83795.1| 60S ribosomal export protein NMD3 [Medicago truncatula]
Length = 89
Score = 45.1 bits (105), Expect = 0.060, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 184 SAHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLD 218
+A LGN+GP V C+KV+NSIALLD L+ ++D
Sbjct: 35 AAAILGNIGPIVFCSKVSNSIALLDSLALKFGFMD 69
>gi|222641016|gb|EEE69148.1| hypothetical protein OsJ_28274 [Oryza sativa Japonica Group]
Length = 311
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP 55
TV CC G+ M N +NMC C+++ V+I E + HA + CP
Sbjct: 23 TVLCCIYGVAMQPNPANMCTRCIRAGVNIIEGVPSHAAVY-CP 64
>gi|349806117|gb|AEQ18531.1| putative 60s ribosomal export protein nmd3 [Hymenochirus curtipes]
Length = 163
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 20/135 (14%)
Query: 258 RTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNP 317
RTHLGHLL +GD +G+ L N ND E N PD + IKK + K QR+ +
Sbjct: 34 RTHLGHLLNVGDLGMGF-LANCNLND-EYINMNQHHIPDVVLIKKYDRTKRQRRRNEG-- 89
Query: 318 PKLKPLEMEVDGSKCGADREKVNNEYEEFLRDL---------MASVTDKEDVPSVPLDYL 368
M+ D + D + E E +++ + S TD+E P + L +
Sbjct: 90 -------MDTDDERQYQDFLEDLEEDELLRKNINIYRNANVPVESDTDEEGAPRISLAEM 142
Query: 369 LADLDSSDKEEGDDS 383
L DL S G D
Sbjct: 143 LEDLHISQDATGGDG 157
>gi|170053271|ref|XP_001862597.1| NMD protein [Culex quinquefasciatus]
gi|167873852|gb|EDS37235.1| NMD protein [Culex quinquefasciatus]
Length = 94
Score = 42.0 bits (97), Expect = 0.50, Method: Composition-based stats.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 257 TRTHLGHLLILGDYAIGYDLHEANQN 282
TR HLGH+L +GD +GYDL EAN N
Sbjct: 44 TRAHLGHILKMGDSVLGYDLAEANDN 69
>gi|449707072|gb|EMD46794.1| nonsense-mediated mRNA decay protein, putative, partial
[Entamoeba histolytica KU27]
Length = 136
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 16 CCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIK 58
CC CG + N S+MC CL +DITE + K I C + K
Sbjct: 24 CCVCGALIEVNPSSMCANCLHKTIDITEGIPKQITIDQCKRCK 66
>gi|300175447|emb|CBK20758.2| unnamed protein product [Blastocystis hominis]
Length = 434
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 76/198 (38%), Gaps = 69/198 (34%)
Query: 30 MCVTCLKSEVDITESLQKHANITPCP---------------------------------- 55
MC+ C++S+VDITE +Q+ + C
Sbjct: 1 MCINCIRSKVDITEGIQRQVVLFQCRGCERYLRPPWTAAPPESKELLALCLKKIRGLKQV 60
Query: 56 ---------------KIKLKLTVQKEVLEGVIVEQSDVV--MSRNITCVNLVPGFMQTGP 98
+IK+ +T+QKEV V+++QS VV + TC + + +Q
Sbjct: 61 KLVDAEFVWTEPHSRRIKVNVTIQKEVFN-VVLQQSFVVAFIIEAKTCEDCIMDSIQHSN 119
Query: 99 DHWDAAVQL--------------ELIQKHDAPARATKIKKMDHGIEFFFSGRSHAVKFVE 144
A VQL + I K + RA I+ G++F F RS A F+
Sbjct: 120 R---AVVQLRQKVEHKRTFFFLEQQIIKANMHRRAALIESQPDGLDFNFPERSDARSFIL 176
Query: 145 FVGEVVPAQSRHEKQLVS 162
++ VVP +QL+S
Sbjct: 177 WLKSVVPVNVGTARQLLS 194
>gi|452949934|gb|EME55400.1| 4-hydroxybenzoate 3-monooxygenase [Rhodococcus ruber BKS 20-38]
Length = 394
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHE--KQLVSR 163
HG+EF F GR H + F E VG V +HE K L++R
Sbjct: 76 HGVEFRFGGRGHRIAFDELVGRAVTVYPQHEVNKDLIAR 114
>gi|407277170|ref|ZP_11105640.1| 4-hydroxybenzoate 3-monooxygenase [Rhodococcus sp. P14]
Length = 394
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 127 HGIEFFFSGRSHAVKFVEFVGEVVPAQSRHE--KQLVSR 163
HG+EF F GR H + F E VG V +HE K L++R
Sbjct: 76 HGVEFRFGGRGHRIAFDELVGRAVTVYPQHEVNKDLIAR 114
>gi|242373747|ref|ZP_04819321.1| possible cell wall associated fibronectin-binding protein
[Staphylococcus epidermidis M23864:W1]
gi|242348567|gb|EES40169.1| possible cell wall associated fibronectin-binding protein
[Staphylococcus epidermidis M23864:W1]
Length = 4172
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 76/186 (40%), Gaps = 30/186 (16%)
Query: 20 GITMVSNASNMCVTCLKSEVDITESLQKHA--NI---TPCPKIKLKLTVQKEV------L 68
G ++ NA N VT + + ++ ++ A N+ T P + +LT KE+ L
Sbjct: 22 GSHLLENAKNNAVTEINKLTALNDAQRQKAIQNVQAQTTIPNVNQQLTTVKELNSAMQAL 81
Query: 69 EGVIVEQSDVVMSRNITCVNLVPGFMQTGPDHWDAAVQ--LELIQKHDAPA--------- 117
+ +Q+DV N + P ++D A+Q E+I K P
Sbjct: 82 RDAVGQQNDVHQQSNYFNEDEQP------KQNYDTAIQSGQEIINKSQDPVMNKTEIEQA 135
Query: 118 --RATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYT 175
R K G S + +A + +E + + PAQ EKQL+++ T N K
Sbjct: 136 TNRINSTKDALDGANKLHSDQENANRQIEGLTSLNPAQITAEKQLINQATTRTNVAQKLA 195
Query: 176 CSVEIS 181
+ E++
Sbjct: 196 AAKELN 201
>gi|374339249|ref|YP_005095985.1| MutS2 family protein [Marinitoga piezophila KA3]
gi|372100783|gb|AEX84687.1| MutS2 family protein [Marinitoga piezophila KA3]
Length = 773
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 293 VPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMA 352
V PD IK++KS EKN+ + + P LKP++ E+D G E E E+F+ DL+A
Sbjct: 665 VSPDEIKLEKSKDEKNKNQKNSMHIPVLKPIKNEIDIR--GYTVEDAIPEIEKFISDLIA 722
Query: 353 S 353
S
Sbjct: 723 S 723
>gi|392585330|gb|EIW74670.1| hypothetical protein CONPUDRAFT_159961 [Coniophora puteana
RWD-64-598 SS2]
Length = 498
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 153 QSRHEKQLVSRGTKSRNCKCKYTCSVEISAISAHN-----------LGNLGPFVICTKVT 201
+S+ +QL+S ++S K+ SVEI+ I +N L N+ P ICT ++
Sbjct: 128 KSKSTEQLLSTDSRSDTANYKFAYSVEIAPICENNLICIPPKQAKQLSNMSPLTICTHIS 187
Query: 202 NSIALLDPFTLRHCYLDA 219
S+ L D TL++ + A
Sbjct: 188 TSLQLTDLATLQNIKVTA 205
>gi|383162666|gb|AFG63996.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162668|gb|AFG63997.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162670|gb|AFG63998.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162672|gb|AFG63999.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162674|gb|AFG64000.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162676|gb|AFG64001.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162678|gb|AFG64002.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162680|gb|AFG64003.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162682|gb|AFG64004.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162684|gb|AFG64005.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162686|gb|AFG64006.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162688|gb|AFG64007.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162690|gb|AFG64008.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162692|gb|AFG64009.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162694|gb|AFG64010.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162696|gb|AFG64011.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162698|gb|AFG64012.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
gi|383162700|gb|AFG64013.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
Length = 75
Score = 38.5 bits (88), Expect = 5.0, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 15/61 (24%)
Query: 327 VDGSKCGADREKVNNEYEE---------------FLRDLMASVTDKEDVPSVPLDYLLAD 371
++ +K G D EK +E EE + R AS+TD EDVPSVPLD LL D
Sbjct: 1 MEDAKEGEDYEKFLDELEEDQEMRSKIALYRNENYQRADTASMTDGEDVPSVPLDELLGD 60
Query: 372 L 372
L
Sbjct: 61 L 61
>gi|361066521|gb|AEW07572.1| Pinus taeda anonymous locus 0_5508_01 genomic sequence
Length = 75
Score = 38.1 bits (87), Expect = 7.5, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 15/61 (24%)
Query: 327 VDGSKCGADREKVNNEYEE---------------FLRDLMASVTDKEDVPSVPLDYLLAD 371
++ +K G D EK +E EE + R AS+TD EDVPSVPLD LL D
Sbjct: 1 MEDAKEGEDYEKFLDELEEDQEMRSKIALYRNENYQRVDTASMTDGEDVPSVPLDELLGD 60
Query: 372 L 372
L
Sbjct: 61 L 61
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,782,131,679
Number of Sequences: 23463169
Number of extensions: 232601783
Number of successful extensions: 617448
Number of sequences better than 100.0: 535
Number of HSP's better than 100.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 614632
Number of HSP's gapped (non-prelim): 1157
length of query: 386
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 242
effective length of database: 8,980,499,031
effective search space: 2173280765502
effective search space used: 2173280765502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)