BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048420
(386 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55BF2|NMD3_DICDI 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum
GN=nmd3 PE=3 SV=1
Length = 530
Score = 201 bits (512), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 206/445 (46%), Gaps = 113/445 (25%)
Query: 11 RKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC---------------- 54
+ + CC CG+ + +N SNMCV C+KS+VDITE + K I C
Sbjct: 9 QANILCCMCGVLIPANPSNMCVDCIKSQVDITEGIPKQLTIQWCRGCARYLQPPNHWAIA 68
Query: 55 -----------------------------------PKIKLKLTVQKEVLEGVIVEQSDVV 79
++K+KLT+QKEV I++Q
Sbjct: 69 ELESRELLTICIKRIKGLNKVKLVDAGWVWTEPHSKRLKVKLTIQKEVFTSAILQQ---- 124
Query: 80 MSRNITCVNLVPGFMQ-------TGPDHWDAAVQL--------------ELIQKHDAPAR 118
I + + Q D W++ VQL +LI KH+A ++
Sbjct: 125 ----IFIIEFIVQGQQCDKCQKFEAKDTWNSVVQLRQKVDHKRTFLYIEQLILKHNAHSQ 180
Query: 119 ATKIKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSV 178
IK+ G++FFFS R+HA+KFVEF+ + P +++ +QL+S ++ KYT SV
Sbjct: 181 TLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDEQNNAANYKYTFSV 240
Query: 179 EISAIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPF 227
EI +S AH LGN+GP V+ TKV+N I +DP TL + A +W SPF
Sbjct: 241 EIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLIHFIDPNTLHTGEISALTFWNSPF 300
Query: 228 KALHTSRQLVEYIVLDVKVAST-------------------ENDTILSTRTHLGHLLILG 268
+AL + +QLVE+ VLDV + ND I R+HLG++L G
Sbjct: 301 RALSSYKQLVEFTVLDVNLTGATRGRYALSDIQLMRSADFGANDNIYDIRSHLGNILNPG 360
Query: 269 DYAIGYDLHEANQNDIELENY-KSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
D A+GYD+ +N D +L K+ PD + +KK+Y KN + ++ K P E
Sbjct: 361 DLALGYDVASSNFPDSDLAGMKKNQQLPDFVLVKKTYPSKNDFRFKRHWYFKEIPKEGIE 420
Query: 328 DGSKCGADREKVNNEYEEFLRDLMA 352
+ K D ++ + EEFLR++ A
Sbjct: 421 NPKKFEID--QMERDREEFLREIEA 443
>sp|Q6P2Z6|NMD3_XENTR 60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3
PE=2 SV=1
Length = 504
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/488 (27%), Positives = 210/488 (43%), Gaps = 136/488 (27%)
Query: 13 TVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP----------------- 55
+ CC+CGI + N +NMCV+CL+ +VDI+E + K ++ C
Sbjct: 14 NILCCQCGIPIPPNPANMCVSCLRMQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCAL 73
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 74 ESRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVD 133
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ ++ C + D W A VQ+ + I KH ++K+
Sbjct: 134 YIVQSQMCDDC---HRVEAKDFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKE 190
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
+ G++F+++ + HA K VEF+ VP + + ++L+S + K T SVEI +
Sbjct: 191 IHDGLDFYYASKQHAQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVC 250
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A +LGN+ IC +VT++I L+DP TL+ +D + YWRSPF +L
Sbjct: 251 KDNLVCLSPKLAQSLGNMNQICICVRVTSTIHLIDPSTLQIAEVDGNTYWRSPFNSLFHP 310
Query: 234 RQLVEYIVLDVKVASTE----------NDTILST-----------------RTHLGHLLI 266
+QL E+IV+D + N IL+ RTHLGHLL
Sbjct: 311 KQLEEFIVMDTDIVRDRKQAAGAGMRSNKHILAEVWVQKTSEMNTTQQYHCRTHLGHLLN 370
Query: 267 LGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME 326
GD +G+DL N ND + PD + IKKSY +++ R KLK +E +
Sbjct: 371 PGDLVLGFDLANCNLNDEFINKMNPHHIPDVVLIKKSYDRTKRQRRRN---WKLKEIERD 427
Query: 327 VDGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDY 367
+G +R +Y++FL DL + S TD+E P + L
Sbjct: 428 REGMDTDDER-----QYQDFLEDLEEDEVIRKNVNIYKNANLPVESDTDEEGAPRISLAE 482
Query: 368 LLADLDSS 375
+L DL S
Sbjct: 483 MLEDLHIS 490
>sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1
Length = 503
Score = 171 bits (434), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 135/495 (27%), Positives = 212/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGVPKQVSISFCKQCQRYFQPPASWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ +VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ IC +VT++I L+DP TL+ +D + +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMSQICICIRVTSAIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVIECSTVRDLKRSAGAGVISKKHTLGEVWIQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK E+
Sbjct: 372 GDLVLGFDLANCNLNDEYVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLK--ELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 427 DRENMDTDDER---QYQDFLEDLEEDEAIRKHVNIYRDATIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>sp|Q5RC82|NMD3_PONAB 60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1
Length = 503
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/495 (27%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLTVQKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTVQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYHLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVRDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>sp|Q96D46|NMD3_HUMAN 60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1
Length = 503
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 209/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCECGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLALCLKKIKAPLSKVRLVDAGFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ ++ C + D W A +Q+ +LI K+ +IK++
Sbjct: 135 VVQSQMCGDC---HRVEAKDFWKAVIQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPCRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT++I L+DP TL+ +D +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSAIHLIDPNTLQVADIDGSTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVQDIKRAAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + S PD + IKKSY +++ R KLK L E
Sbjct: 372 GDLVLGFDLANCNLNDEHVNKMNSDRVPDVVLIKKSYDRTKRQRRRN---WKLKELARER 428
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
+ +R +Y++FL DL + S TD E P + L +
Sbjct: 429 ENMDTDDER-----QYQDFLEDLEEDEAIRKNVNIYRDSAIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>sp|Q5BLF0|NMD3_DANRE 60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1
Length = 505
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 138/501 (27%), Positives = 207/501 (41%), Gaps = 138/501 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPC------------------- 54
+ CC CG+ + N +NMCV+CL+++VDI+E + K I C
Sbjct: 15 ILCCTCGVPIPPNPANMCVSCLRTQVDISEGIPKQVTIHFCRQCERYLQPPGSWVQCALE 74
Query: 55 ---------------------------------PKIKLKLTVQKEVLEGVIVEQSDVVMS 81
+IK+KLT+QKEV+ G I++Q
Sbjct: 75 SRELLALCLKKLKASMSKVRLIDAGFLWTEPHSKRIKIKLTIQKEVMNGAILQQV----- 129
Query: 82 RNITCVNLVPGFM------QTGPDHWDAAVQL--------------ELIQKHDAPARATK 121
T +V G M D W A VQ+ +LI KH +
Sbjct: 130 --FTVEFVVQGQMCEDCHRVEAKDFWKAVVQVRQKTVHKKTFYYLEQLILKHKLHQNTVR 187
Query: 122 IKKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEIS 181
IK++ GI+F+++ + HA K V+F+ VP +S+ ++L+S S K T SVEI
Sbjct: 188 IKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDVHSNTYNYKSTFSVEIV 247
Query: 182 AIS-----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKAL 230
+ A +LGN+G +C +VT+SI L+DP TL+ +D +WR PF +L
Sbjct: 248 PVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLIDPNTLQIAEVDGSTFWRHPFNSL 307
Query: 231 HTSRQLVEYI---------------------------VLDVKVASTENDTILSTRTHLGH 263
+ RQL E+I V K + ++ RT +GH
Sbjct: 308 CSPRQLEEFIIMDIDIIRDQRLGAGAGLKSNKHTLAEVWVQKTSEMDSSHQYHCRTFMGH 367
Query: 264 LLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPL 323
LL +GD +G+D AN ND L PD + IKKSY ++ K + KLK +
Sbjct: 368 LLNIGDLVLGFDFANANINDEFLNKMNPQHVPDVVLIKKSY---DRMKRARKRVWKLKEM 424
Query: 324 EMEVDGSKCGADREKVNNEYE-----------EFLRD-----LMASVTDKEDVPSVPLDY 367
+ E D + +R+ + RD + S TD + P + L
Sbjct: 425 DREKDAADTDDERQYTEFLEDLEEDEMLRKNINIFRDASKIPVEESDTDDDGAPRISLAE 484
Query: 368 LLADLDSSDKE--EGDDSMIE 386
+L DL SD EG D M +
Sbjct: 485 MLEDLSLSDATGGEGADMMTD 505
>sp|Q09817|NMD3_SCHPO 60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nmd3 PE=3 SV=1
Length = 498
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 123/435 (28%), Positives = 189/435 (43%), Gaps = 102/435 (23%)
Query: 10 VRKTVSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP-------------- 55
+ T+ CC+CG+ NA+ MC+ C+K DIT + + + + C
Sbjct: 18 IASTILCCECGVPTPPNAAAMCMDCIKMTTDITSGIPRESTVNHCRECERYMQPPNNWMI 77
Query: 56 -------------------------------------KIKLKLTVQKEVLEGVIVEQSDV 78
+IK+KLTVQKE I++QS
Sbjct: 78 APLESRELMAICLKKLRGLNQVRLVDANFIWTEPHSRRIKVKLTVQKEAFTNTILQQSFQ 137
Query: 79 V--MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKI 122
V N C + + P W A Q+ ++I KH A I
Sbjct: 138 VEFYVNNTQCPDCARTYT---PHIWKAVCQVRQKVLHKRTFLYLEQIILKHKAHMNTVNI 194
Query: 123 KKMDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISA 182
K+ GI+F+F R+HA+K VEF+ VVP + + ++L+S KS K+T S+EI
Sbjct: 195 KETKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDFKSNTANYKFTYSIEIVP 254
Query: 183 ISAHNL-----------GNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALH 231
I +L GN+ V+CTKV +I LDP TL+ C + YWR+PF AL
Sbjct: 255 ICKDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFLDPLTLQTCDMLPSIYWRTPFPALA 314
Query: 232 TSRQLVEYIVLDVK----------------VASTENDTILSTRTHLGHLLILGDYAIGYD 275
+L E+IV DV + S++ T L TRTHLG +L G+ + Y
Sbjct: 315 DIPELTEFIVADVDLLGPTNGKYALADVELIKSSDGSTHL-TRTHLGGILNAGNTVLAYH 373
Query: 276 LHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEVDGSKCGAD 335
L N N+ + + P+ + +KK+Y + ++K+R +LK + M+ D
Sbjct: 374 LAVTNFNNEVYDTLREDSIPEVVIVKKTYPQ-TKKKNRN---WRLKTIGMQKAEDVKKQD 429
Query: 336 REKVNNEYEEFLRDL 350
E+ +YE FL++L
Sbjct: 430 IERQERDYELFLQNL 444
>sp|Q08DS5|NMD3_BOVIN 60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1
Length = 503
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 136/492 (27%), Positives = 207/492 (42%), Gaps = 136/492 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC CG+ + N +N+CV CL+S+VDI++ + K +I+ C
Sbjct: 15 ILCCDCGVPISPNPANICVACLRSKVDISQGIPKQVSISFCKQCQRYFQPPGTWVQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRDLLALCLKKIKAPLSKVRLVDASFVWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ +LI K+ +IK++
Sbjct: 135 VVQPQMCGDC---HRVEAKDFWKAVVQVRQKTLHKKTFYYLEQLILKYGMHQNTLRIKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F++S + HA K VEF+ VP + + ++L+S+ S K T SVEI I
Sbjct: 192 HDGLDFYYSSKQHAQKMVEFLQCTVPTRYKASQRLISQDIHSNTYNYKSTFSVEIVPICK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ +C +VT+ I L+DP TL+ +D + +W PF +L +
Sbjct: 252 DNVVCLSPKLAQSLGNMNQICVCIRVTSVIHLIDPNTLQVADIDGNTFWSHPFNSLCHPK 311
Query: 235 QLVEYIVLDV---------------------------KVASTENDTILSTRTHLGHLLIL 267
QL E+IV++ K + D RTHLGHLL
Sbjct: 312 QLEEFIVMECSIVQDIKRSAGAGMISKKHTLGEVWVQKTSEMNTDKQYFCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + KS PD + IKKSY +++ R KLK E+
Sbjct: 372 GDLVLGFDLVNCNLNDEHVNKMKSDRVPDVVLIKKSYDRTRRQRRRN---WKLK--ELAR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD E P + L +
Sbjct: 427 DRENTDTDDER---QYQDFLEDLEEDEAIRKNVNIYRDSTIPVESDTDDEGAPRISLAEM 483
Query: 369 LADLDSSDKEEG 380
L DL S G
Sbjct: 484 LEDLHISQDATG 495
>sp|P38861|NMD3_YEAST 60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NMD3 PE=1 SV=3
Length = 518
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 210/500 (42%), Gaps = 139/500 (27%)
Query: 13 TVSCCKCGITM-VSNASNMCVTCLKSEVDITESLQKHANITPCP---------------- 55
T+ CC CG + S MC C+K VDIT+ + + ANI+ C
Sbjct: 16 TLLCCNCGTPIDGSTGLVMCYDCIKLTVDITQGIPREANISFCRNCERFLQPPGQWIRAE 75
Query: 56 -----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV- 79
+I++KLTVQ E + I++Q+ V
Sbjct: 76 LESRELLAICLRRLKGLTKVRLVDASFIWTEPHSRRIRIKLTVQGEAMTNTIIQQTFEVE 135
Query: 80 -MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKK 124
+ + C + + + W A VQ+ +LI KH+A I +
Sbjct: 136 YIVIAMQCPDCARSYTT---NTWRATVQIRQKVPHKRTFLFLEQLILKHNAHVDTISISE 192
Query: 125 MDHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS 184
G++FF++ ++HAVK ++F+ VVP + + ++L+S+ T + K++ SVEI I
Sbjct: 193 AKDGLDFFYAQKNHAVKMIDFLNAVVPIKHKKSEELISQDTHTGASTYKFSYSVEIVPIC 252
Query: 185 -----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTS 233
A ++GN+ FV+C+K++N++ +DP TL+ L YWR+PF AL
Sbjct: 253 KDDLVVLPKKLAKSMGNISQFVLCSKISNTVQFMDPTTLQTADLSPSVYWRAPFNALADV 312
Query: 234 RQLVEYIVLDV---------------KVASTE----NDTILSTRTHLGHLLILGDYAIGY 274
QLVE+IVLDV VA T ND + R+HLG + GD +GY
Sbjct: 313 TQLVEFIVLDVDSTGISRGNRVLADITVARTSDLGVNDQVYYVRSHLGGICHAGDSVMGY 372
Query: 275 DLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEME---VDGSK 331
+ +N N + PD + +KK Y QRK +K KLK + E +D S
Sbjct: 373 FIANSNYNSDLFDGLNIDYVPDVVLVKKLY----QRKSKKSRHWKLKRMAKEHKDIDASL 428
Query: 332 CGADR------EKVNNEYEEFLRDLMASVTDKEDV------------------------- 360
R E+ +YE FL++L ++ V
Sbjct: 429 DYNSRAQKQEMERAEKDYELFLQELEEDAELRQSVNLYKNREANVPPEEHEMDEDEDEDA 488
Query: 361 PSVPLDYLLADLDSSDKEEG 380
P + +D LL +LD E+G
Sbjct: 489 PQINIDELLDELDEMTLEDG 508
>sp|Q6GNS3|NMD3_XENLA 60S ribosomal export protein NMD3 OS=Xenopus laevis GN=nmd3 PE=2
SV=1
Length = 504
Score = 158 bits (399), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 134/495 (27%), Positives = 211/495 (42%), Gaps = 136/495 (27%)
Query: 14 VSCCKCGITMVSNASNMCVTCLKSEVDITESLQKHANITPCP------------------ 55
+ CC+CGI + N +NMCV CL+++VDI+E + K ++ C
Sbjct: 15 ILCCQCGIPIPPNPANMCVACLRTQVDISEGIPKQVSVHFCKQCERYLQPPGTWIQCALE 74
Query: 56 ----------------------------------KIKLKLTVQKEVLEGVIVEQSDVV-- 79
++K+KLT+QKEV+ G I++Q VV
Sbjct: 75 SRELLTLCLKKLKANLSKVRLIDAGFIWTEPHSKRLKVKLTIQKEVMNGAILQQVFVVDY 134
Query: 80 MSRNITCVNLVPGFMQTGPDHWDAAVQL--------------ELIQKHDAPARATKIKKM 125
+ + C + D W A VQ+ + I KH ++K++
Sbjct: 135 VVQAQMCDDC---HRVEAKDFWKAVVQVRQKVLHKKTFYYLEQTILKHRLHQNTLRVKEI 191
Query: 126 DHGIEFFFSGRSHAVKFVEFVGEVVPAQSRHEKQLVSRGTKSRNCKCKYTCSVEISAIS- 184
G++F+++ + H K VEF+ VP + + ++L+S + K T SVEI +
Sbjct: 192 HDGLDFYYASKQHGQKMVEFLQCTVPCRFKASQRLISHDIHTNAYNYKSTFSVEIVPVCK 251
Query: 185 ----------AHNLGNLGPFVICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSR 234
A +LGN+ IC +VT++I L+DP TL+ +D + YWR PF +L +
Sbjct: 252 DNLVCLSPKLAQSLGNMNQICICARVTSTIHLIDPSTLQIAEVDGNTYWRYPFNSLFHPK 311
Query: 235 QLVEYIVLDVKV----------ASTENDTILS-----------------TRTHLGHLLIL 267
Q+ E+IV+D ++ N +L+ RTHLGHLL
Sbjct: 312 QMEEFIVMDTEIIRDRKQAAGAGMRSNKHVLAEVWVQKTSEMNTTQQYHCRTHLGHLLNP 371
Query: 268 GDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSYKEKNQRKHRKPNPPKLKPLEMEV 327
GD +G+DL N ND + PD + IKKSY +++ R KLK EM+
Sbjct: 372 GDLVLGFDLSNCNLNDEFINKMNPHHIPDVVLIKKSYDRARRQRRRN---WKLK--EMDR 426
Query: 328 DGSKCGADREKVNNEYEEFLRDL-------------------MASVTDKEDVPSVPLDYL 368
D D E+ +Y++FL DL + S TD+E P + L +
Sbjct: 427 DREGMDTDDER---QYQDFLEDLEEDELLRKNVNIFKNANVPVESDTDEEGAPRISLAEM 483
Query: 369 LADLDSSDKEEGDDS 383
L DL S G++
Sbjct: 484 LEDLHISQDATGEEG 498
>sp|Q80YA8|CRUM2_MOUSE Protein crumbs homolog 2 OS=Mus musculus GN=Crb2 PE=2 SV=3
Length = 1282
Score = 33.9 bits (76), Expect = 2.2, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 85 TCVNLVPGFMQTGPDHW---DAAVQLELIQKHDAPARATKIKKMDHGIEFFF 133
TC + V G++ P+ W D +VQL Q H P AT I G+ +F
Sbjct: 376 TCSDTVAGYICQCPEAWGGHDCSVQLTGCQGHTCPLAATCIPTFKSGLHGYF 427
>sp|Q5IJ48|CRUM2_HUMAN Protein crumbs homolog 2 OS=Homo sapiens GN=CRB2 PE=1 SV=2
Length = 1285
Score = 33.5 bits (75), Expect = 2.7, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 19 CGITMVSNASNMCVTCLKSEVDITESLQKHANITPCPKIKLKLTVQKEVLEGVIVEQSDV 78
CG+ + AS C+ + D+ Q H CP T +++V E + SD
Sbjct: 317 CGVEVDECASRPCLNGGHCQ-DLPNGFQCH-----CPDGYAGPTCEEDVDECL----SDP 366
Query: 79 VMSRNITCVNLVPGFMQTGPDHW---DAAVQLELIQKHDAPARATKIKKMDHGIEFF 132
+ TC + V G++ P+ W D +VQL Q H P AT I + G+ +
Sbjct: 367 CLHGG-TCSDTVAGYICRCPETWGGRDCSVQLTGCQGHTCPLAATCIPIFESGVHSY 422
>sp|A2AQH4|BCORL_MOUSE BCL-6 corepressor-like protein 1 OS=Mus musculus GN=Bcorl1 PE=2 SV=1
Length = 1781
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 307 KNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVT 355
+ + KHRKP P+ +P DG + G+ +K N + +F+ ++++ T
Sbjct: 1177 RGKHKHRKPTKPESQPPGKRTDGHEEGSLEKKAKNSFRDFIPVVLSTRT 1225
>sp|Q92888|ARHG1_HUMAN Rho guanine nucleotide exchange factor 1 OS=Homo sapiens GN=ARHGEF1
PE=1 SV=2
Length = 912
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 57/142 (40%), Gaps = 10/142 (7%)
Query: 245 KVASTENDTILSTRTHLGHLLILGDYAIGYDLHEANQNDIELENYKSLVPPDTIKIKKSY 304
K A+ N L R HLG GD G + + N +S P T K S
Sbjct: 214 KSAAVVNAIGLYMR-HLGVRTKSGDKKSGRNFFRKKV----MGNRRSDEPAKTKKGLSSI 268
Query: 305 KEKNQRKHRKPNPPKLKPLEMEVDGSKCGADREKVNNEYEEFLRDLMASVTDKEDVPSVP 364
+ + +P P + L+ EVD K GA K R++ A +D P V
Sbjct: 269 LDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSRDRNIGAP---GQDTPGVS 325
Query: 365 LDYLLADLDSSDKEEGDDSMIE 386
L L LDS D+E G D+ +E
Sbjct: 326 LHPL--SLDSPDREPGADAPLE 345
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,851,988
Number of Sequences: 539616
Number of extensions: 5738514
Number of successful extensions: 16534
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 16469
Number of HSP's gapped (non-prelim): 51
length of query: 386
length of database: 191,569,459
effective HSP length: 119
effective length of query: 267
effective length of database: 127,355,155
effective search space: 34003826385
effective search space used: 34003826385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)