Query 048420
Match_columns 386
No_of_seqs 163 out of 286
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:13:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kzy_A ZNF216-A20, zfand5 prot 74.4 2.1 7.2E-05 32.6 2.9 36 1-38 3-39 (62)
2 2pk7_A Uncharacterized protein 41.2 6.5 0.00022 30.2 0.4 33 14-47 9-44 (69)
3 2jr6_A UPF0434 protein NMA0874 38.9 6.2 0.00021 30.2 -0.1 33 14-47 9-44 (68)
4 2hf1_A Tetraacyldisaccharide-1 38.3 6.1 0.00021 30.3 -0.2 33 14-47 9-44 (68)
5 2js4_A UPF0434 protein BB2007; 34.2 6.9 0.00024 30.2 -0.5 33 14-47 9-44 (70)
6 2c7n_A Rabex-5, GEF 1, RAB gua 32.7 15 0.00051 28.9 1.2 30 9-38 12-42 (74)
7 2jny_A Uncharacterized BCR; st 32.2 8.8 0.0003 29.4 -0.2 33 14-47 11-46 (67)
8 2kq9_A DNAK suppressor protein 30.6 11 0.00036 31.3 0.0 24 13-36 81-110 (112)
9 2kgo_A Uncharacterized protein 28.2 15 0.00051 30.7 0.5 25 13-37 56-86 (108)
10 3j20_P 30S ribosomal protein S 26.8 49 0.0017 24.5 3.0 26 13-38 18-46 (56)
11 3u5e_g 60S ribosomal protein L 24.1 23 0.0008 30.2 1.0 25 15-39 43-89 (121)
12 2xzm_N RPS29E; ribosome, trans 23.4 45 0.0015 24.6 2.3 28 12-39 16-46 (55)
13 2vqe_N 30S ribosomal protein S 22.5 47 0.0016 24.8 2.3 32 9-40 17-49 (61)
14 3ukx_C Bimax2 peptide; arm rep 21.2 31 0.0011 21.8 0.9 10 310-319 6-15 (28)
15 3oj3_I Tumor necrosis factor a 21.1 37 0.0013 24.6 1.4 26 13-38 18-45 (49)
16 3k8u_A Putative ABC transporte 20.0 41 0.0014 28.1 1.7 34 189-222 92-127 (156)
No 1
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=74.43 E-value=2.1 Score=32.64 Aligned_cols=36 Identities=25% Similarity=0.553 Sum_probs=26.2
Q ss_pred CccccCcCCCCCeeeeec-CCCCCCCCCcccchHhhhcc
Q 048420 1 MVQAAGIFAVRKTVSCCK-CGITMVSNASNMCVTCLKSE 38 (386)
Q Consensus 1 ~~~~~~~~~~~~~ilCc~-CG~~i~pn~~nmC~~Cl~~~ 38 (386)
||++... +...++|.. ||-.=.|...|||..|++..
T Consensus 3 M~~e~~~--~~~~~lC~ngCGFfGnpaT~nlCSkCyr~~ 39 (62)
T 2kzy_A 3 MAQETNQ--TPGPMLCSTGCGFYGNPRTNGMCSVCYKEH 39 (62)
T ss_dssp CCCCCCC--CSCCCBCTTCCSSBCCTTTTSCCHHHHHHH
T ss_pred hhhcccC--CCcccchhhCCCCcCChhhcCcCHHHHHHH
Confidence 7777663 335678864 88766666779999999965
No 2
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=41.19 E-value=6.5 Score=30.22 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=25.5
Q ss_pred eeeecCCCCCCCCCc---ccchHhhhccccccccccc
Q 048420 14 VSCCKCGITMVSNAS---NMCVTCLKSEVDITESLQK 47 (386)
Q Consensus 14 ilCc~CG~~i~pn~~---nmC~~Cl~~~vdItegIpk 47 (386)
.-|+.|+.+..-... =.|..| ...+.|.+|||-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~c-g~~YPI~dGIPv 44 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGA-GLAYPIRDGIPV 44 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTT-TEEEEEETTEEC
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCC-CcEecCcCCeee
Confidence 469999988764433 369998 678999999984
No 3
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=38.91 E-value=6.2 Score=30.24 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=25.5
Q ss_pred eeeecCCCCCCCCCc---ccchHhhhccccccccccc
Q 048420 14 VSCCKCGITMVSNAS---NMCVTCLKSEVDITESLQK 47 (386)
Q Consensus 14 ilCc~CG~~i~pn~~---nmC~~Cl~~~vdItegIpk 47 (386)
.-|+.|+.+..-... =.|..| ...+.|.+|||-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~c-g~~YPI~dGIPv 44 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQA-KLAYPIKDGIPY 44 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTT-TEEEEEETTEEC
T ss_pred eECCCCCCcCeEeCCCCEEEcCCC-CcEecCCCCeee
Confidence 569999988764433 269998 678999999984
No 4
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=38.28 E-value=6.1 Score=30.29 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=25.5
Q ss_pred eeeecCCCCCCCCCc---ccchHhhhccccccccccc
Q 048420 14 VSCCKCGITMVSNAS---NMCVTCLKSEVDITESLQK 47 (386)
Q Consensus 14 ilCc~CG~~i~pn~~---nmC~~Cl~~~vdItegIpk 47 (386)
.-|+.|+.+..-... =.|..| ...+.|.+|||-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~c-g~~YPI~dGIPv 44 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGD-RLAFPIKDGIPM 44 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTT-TEEEEEETTEEC
T ss_pred eECCCCCCcCeEeCCCCEEEcCCC-CcEecCCCCeee
Confidence 469999988764432 269998 678999999984
No 5
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=34.24 E-value=6.9 Score=30.16 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=25.5
Q ss_pred eeeecCCCCCCCCCc---ccchHhhhccccccccccc
Q 048420 14 VSCCKCGITMVSNAS---NMCVTCLKSEVDITESLQK 47 (386)
Q Consensus 14 ilCc~CG~~i~pn~~---nmC~~Cl~~~vdItegIpk 47 (386)
.-|+.|+.+..-+.. =.|..| ...+.|.+|||-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~c-g~~YPI~dGIPv 44 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNAD-RLAFPVRDGVPI 44 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTT-TEEEEEETTEEC
T ss_pred eECCCCCCcCEEeCCCCEEEcCCC-CceecCCCCeee
Confidence 569999998754433 369998 678999999984
No 6
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=32.73 E-value=15 Score=28.86 Aligned_cols=30 Identities=23% Similarity=0.521 Sum_probs=18.2
Q ss_pred CCCCeeeeec-CCCCCCCCCcccchHhhhcc
Q 048420 9 AVRKTVSCCK-CGITMVSNASNMCVTCLKSE 38 (386)
Q Consensus 9 ~~~~~ilCc~-CG~~i~pn~~nmC~~Cl~~~ 38 (386)
.+...++|.. ||-.=.|...|||..|++..
T Consensus 12 ~pe~~~lC~ngCGFfGnpaT~nlCSkCyrd~ 42 (74)
T 2c7n_A 12 VDQSDLLCKKGCGYYGNPAWQGFCSKCWREE 42 (74)
T ss_dssp ------CCTTCSSSCCCGGGTTCCHHHHHHH
T ss_pred CCCcchhHHhCCCCCCChhhcCccHHHHHHH
Confidence 3445578874 77665555669999999975
No 7
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.20 E-value=8.8 Score=29.38 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=25.6
Q ss_pred eeeecCCCCCCCCCc---ccchHhhhccccccccccc
Q 048420 14 VSCCKCGITMVSNAS---NMCVTCLKSEVDITESLQK 47 (386)
Q Consensus 14 ilCc~CG~~i~pn~~---nmC~~Cl~~~vdItegIpk 47 (386)
.-|+.|+.+..-... =.|..| ...+.|.+|||-
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c-~~~YPI~dGIPv 46 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERL-NLAYRIDDGIPV 46 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTT-TEEEEEETTEEC
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCC-CccccCCCCEee
Confidence 469999998764433 379998 678999999984
No 8
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=30.65 E-value=11 Score=31.25 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=18.2
Q ss_pred eeeeecCCCCCCC-----CC-cccchHhhh
Q 048420 13 TVSCCKCGITMVS-----NA-SNMCVTCLK 36 (386)
Q Consensus 13 ~ilCc~CG~~i~p-----n~-~nmC~~Cl~ 36 (386)
+-.|-.||.||.. .| +..|+.|-.
T Consensus 81 yg~C~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~ 110 (112)
T 2kq9_A 81 FGTCVKCGKRISEDRLKAVPYTPFCQECAA 110 (112)
T ss_dssp CSEETTTTEECCHHHHHHCSCCSSCHHHHH
T ss_pred cCeeCCCCCcccHHHHhcCCCcchhHHHHh
Confidence 4689999999964 33 478999953
No 9
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=28.22 E-value=15 Score=30.72 Aligned_cols=25 Identities=20% Similarity=0.660 Sum_probs=19.1
Q ss_pred eeeeecCCCCCCC-----CC-cccchHhhhc
Q 048420 13 TVSCCKCGITMVS-----NA-SNMCVTCLKS 37 (386)
Q Consensus 13 ~ilCc~CG~~i~p-----n~-~nmC~~Cl~~ 37 (386)
+-.|-.||.||.+ .| +..|+.|-..
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~ 86 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQE 86 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHH
Confidence 5689999999964 23 4789999653
No 10
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.75 E-value=49 Score=24.53 Aligned_cols=26 Identities=19% Similarity=0.540 Sum_probs=18.6
Q ss_pred eeeeecCCCCCCC---CCcccchHhhhcc
Q 048420 13 TVSCCKCGITMVS---NASNMCVTCLKSE 38 (386)
Q Consensus 13 ~ilCc~CG~~i~p---n~~nmC~~Cl~~~ 38 (386)
.-.|..||++-.. -.-|||-.|+|+.
T Consensus 18 ~~rC~vcGr~~g~iRkfGL~~cR~cfRe~ 46 (56)
T 3j20_P 18 ARRCIRCGQYGPIIRIQGLMLCRHCFREV 46 (56)
T ss_dssp TCCCSSSCCSSSCCCTTTCCCCHHHHHHH
T ss_pred ceEeecCCCCcccccccCChHHHHHHHHH
Confidence 4679999997432 1235699999974
No 11
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=24.09 E-value=23 Score=30.16 Aligned_cols=25 Identities=24% Similarity=0.800 Sum_probs=18.8
Q ss_pred eeecCCCCCCCCCc----------------------ccchHhhhccc
Q 048420 15 SCCKCGITMVSNAS----------------------NMCVTCLKSEV 39 (386)
Q Consensus 15 lCc~CG~~i~pn~~----------------------nmC~~Cl~~~v 39 (386)
.|..||.++..-++ .+|..|++.++
T Consensus 43 kCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI 89 (121)
T 3u5e_g 43 KCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERI 89 (121)
T ss_dssp BCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHHHHH
T ss_pred CCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHHHHH
Confidence 39999987755332 69999998764
No 12
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=23.38 E-value=45 Score=24.57 Aligned_cols=28 Identities=18% Similarity=0.512 Sum_probs=19.5
Q ss_pred CeeeeecCCCCCC---CCCcccchHhhhccc
Q 048420 12 KTVSCCKCGITMV---SNASNMCVTCLKSEV 39 (386)
Q Consensus 12 ~~ilCc~CG~~i~---pn~~nmC~~Cl~~~v 39 (386)
..-.|..||++-. .-.-|||-.|+|+..
T Consensus 16 ~~nrC~~cGr~rg~iRkfgl~lcR~cFRe~A 46 (55)
T 2xzm_N 16 DSKECRVCGARQGLITKYEMMTCRRCFREQA 46 (55)
T ss_dssp GGCCCTTTCCSSTTCCCSSSCCCHHHHHHHH
T ss_pred CceEeecCCCCcchHHHhCCchhhHHHHHHH
Confidence 3467999999832 122359999999753
No 13
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=22.49 E-value=47 Score=24.85 Aligned_cols=32 Identities=25% Similarity=0.578 Sum_probs=22.3
Q ss_pred CCCCeeeeecCCCCCCC-CCcccchHhhhcccc
Q 048420 9 AVRKTVSCCKCGITMVS-NASNMCVTCLKSEVD 40 (386)
Q Consensus 9 ~~~~~ilCc~CG~~i~p-n~~nmC~~Cl~~~vd 40 (386)
++...-.|..||+|=.- -.-+||-.|+|+...
T Consensus 17 ~~r~~nRC~~~GR~rg~iRkfglcR~~FRe~A~ 49 (61)
T 2vqe_N 17 KVRAYTRCVRCGRARSVYRFFGLCRICLRELAH 49 (61)
T ss_dssp GGGCCCCCTTTCCCTTCCTTTSSCHHHHHHHHH
T ss_pred CCCCceeeecCCCCceeeccCceeHHHHHHHHh
Confidence 34445789999998321 244799999997544
No 14
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=21.17 E-value=31 Score=21.75 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=6.1
Q ss_pred hccCCCCCCc
Q 048420 310 RKHRKPNPPK 319 (386)
Q Consensus 310 ~~~~~~R~wk 319 (386)
++|+++|.|.
T Consensus 6 rrrkrkrewd 15 (28)
T 3ukx_C 6 RRRKRKREWD 15 (28)
T ss_dssp CCCCCCCCCC
T ss_pred HHHHhhcccc
Confidence 3455677883
No 15
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=21.11 E-value=37 Score=24.61 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=19.9
Q ss_pred eeeee--cCCCCCCCCCcccchHhhhcc
Q 048420 13 TVSCC--KCGITMVSNASNMCVTCLKSE 38 (386)
Q Consensus 13 ~ilCc--~CG~~i~pn~~nmC~~Cl~~~ 38 (386)
..+|. .||--=.|-..|||..|++..
T Consensus 18 q~lC~~ngCGFfG~p~t~n~CSkCyre~ 45 (49)
T 3oj3_I 18 TSKCRKAGCVYFGTPENKGFCTLCFIEY 45 (49)
T ss_dssp CCBCSSTTCSSBCBGGGTTBCHHHHHHH
T ss_pred ccccccCCCCCccCcccCCcchHHHHHH
Confidence 37887 788765556779999999854
No 16
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=20.04 E-value=41 Score=28.10 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=26.2
Q ss_pred CCCCCeEEEEeeCC-cEEEEcCCCC-ceeEeccccc
Q 048420 189 GNLGPFVICTKVTN-SIALLDPFTL-RHCYLDADQY 222 (386)
Q Consensus 189 G~i~~l~lc~kV~~-~I~liDP~Tl-~~~~l~~~~Y 222 (386)
|+.+.++|+.+++. .+.+.||..+ ....++...|
T Consensus 92 g~~~hfvVl~~~~~~~v~I~DP~~g~~~~~ls~~ef 127 (156)
T 3k8u_A 92 KRLQHYYVVYGSQNNQLIIGDPDPSVKVTRMSKERF 127 (156)
T ss_dssp TEEEEEEEEEEEETTEEEEEECSTTTEEEEEEHHHH
T ss_pred CCCcEEEEEEEEcCCEEEEEcCCCCcceEEEcHHHH
Confidence 33578999999865 7899999998 5677776654
Done!