Query 048420
Match_columns 386
No_of_seqs 163 out of 286
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 16:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048420.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048420hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j0151 g.41.8.5 (5:2-60) Ribo 33.4 8.5 0.00062 27.0 1.7 22 11-34 27-48 (59)
2 d1wyha1 g.39.1.3 (A:35-66) Fou 31.2 6.6 0.00048 24.6 0.7 25 15-39 1-31 (32)
3 d1x4la2 g.39.1.3 (A:37-66) Fou 30.6 2.9 0.00021 25.5 -1.1 13 11-23 18-30 (30)
4 d1x4ka1 g.39.1.3 (A:35-66) Fou 30.3 7.4 0.00054 24.3 0.8 25 15-39 1-31 (32)
5 d1tjla2 g.39.1.13 (A:111-151) 30.0 6.7 0.00049 25.5 0.6 23 15-37 3-31 (41)
6 d1iz6a2 b.40.4.5 (A:71-137) C- 25.2 55 0.004 23.3 5.0 45 196-240 8-52 (67)
7 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 25.0 12 0.00088 26.1 1.3 21 12-34 28-48 (58)
8 d1v43a2 b.40.6.3 (A:304-373) H 23.3 89 0.0065 20.9 5.9 42 238-279 9-58 (70)
9 d2gnra1 b.40.4.15 (A:8-144) Hy 23.2 11 0.00082 29.9 0.9 28 14-42 40-67 (137)
10 d1lv3a_ g.39.1.9 (A:) Hypothet 20.4 18 0.0013 25.8 1.4 15 11-25 4-18 (65)
No 1
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=33.36 E-value=8.5 Score=27.02 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=18.2
Q ss_pred CCeeeeecCCCCCCCCCcccchHh
Q 048420 11 RKTVSCCKCGITMVSNASNMCVTC 34 (386)
Q Consensus 11 ~~~ilCc~CG~~i~pn~~nmC~~C 34 (386)
++-+.|..||.+. .+..+|.+|
T Consensus 27 p~l~~C~~CG~~~--~pHrvC~~C 48 (59)
T d2j0151 27 PTLVPCPECKAMK--PPHTVCPEC 48 (59)
T ss_dssp CCCBCCSSSSSCB--CTTCBCTTT
T ss_pred CceeECCCCCCcc--cceeECCCC
Confidence 3458899999976 578899999
No 2
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.19 E-value=6.6 Score=24.57 Aligned_cols=25 Identities=24% Similarity=0.697 Sum_probs=18.7
Q ss_pred eeecCCCCCCC------CCcccchHhhhccc
Q 048420 15 SCCKCGITMVS------NASNMCVTCLKSEV 39 (386)
Q Consensus 15 lCc~CG~~i~p------n~~nmC~~Cl~~~v 39 (386)
+|+.|-.||-. ...+-|+.|+-.++
T Consensus 1 ~C~~C~qPIGtkSFip~~~~~yCvpCYE~kf 31 (32)
T d1wyha1 1 LCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 31 (32)
T ss_dssp BCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred CcccccCcccccccccCCCcEEEEecccccc
Confidence 59999998843 24578999997653
No 3
>d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.56 E-value=2.9 Score=25.46 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=9.3
Q ss_pred CCeeeeecCCCCC
Q 048420 11 RKTVSCCKCGITM 23 (386)
Q Consensus 11 ~~~ilCc~CG~~i 23 (386)
+.-|+|..||+.|
T Consensus 18 rddilc~dcgkdi 30 (30)
T d1x4la2 18 RDDILCPDCGKDI 30 (30)
T ss_dssp SSSEECHHHHHTC
T ss_pred ccceeccccCcCC
Confidence 3458888888754
No 4
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.27 E-value=7.4 Score=24.35 Aligned_cols=25 Identities=24% Similarity=0.721 Sum_probs=18.6
Q ss_pred eeecCCCCCCCC------CcccchHhhhccc
Q 048420 15 SCCKCGITMVSN------ASNMCVTCLKSEV 39 (386)
Q Consensus 15 lCc~CG~~i~pn------~~nmC~~Cl~~~v 39 (386)
+|+.|-.||-.- ..+-|+.|+-.++
T Consensus 1 ~C~~C~qPIGtksfipk~~~~yCvpCyE~kf 31 (32)
T d1x4ka1 1 ICHRCQQPIGTKSFIPKDNQNFCVPCYEKQH 31 (32)
T ss_dssp CCSSSCCCCCSSSEEEETTEEEEHHHHHHHT
T ss_pred CcccccCcccccccccCCCCceEeecchhhc
Confidence 599999988432 3478999997653
No 5
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=29.97 E-value=6.7 Score=25.52 Aligned_cols=23 Identities=22% Similarity=0.781 Sum_probs=17.2
Q ss_pred eeecCCCCCCC-----CC-cccchHhhhc
Q 048420 15 SCCKCGITMVS-----NA-SNMCVTCLKS 37 (386)
Q Consensus 15 lCc~CG~~i~p-----n~-~nmC~~Cl~~ 37 (386)
.|-.||.+|.. .| +..|++|-..
T Consensus 3 ~C~~Cg~~I~~~RL~a~P~a~~Cv~Cq~~ 31 (41)
T d1tjla2 3 YCESCGVEIGIRRLEARPTADLCIDCKTL 31 (41)
T ss_dssp BCSSSSCBCCHHHHHHCTTCCSCHHHHHH
T ss_pred chhhCcCccCHHHHhcCCCcCCcHHHHHH
Confidence 69999999964 23 4689999643
No 6
>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.18 E-value=55 Score=23.30 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=28.5
Q ss_pred EEEeeCCcEEEEcCCCCceeEeccccccccCCcccCCCCCceEEE
Q 048420 196 ICTKVTNSIALLDPFTLRHCYLDADQYWRSPFKALHTSRQLVEYI 240 (386)
Q Consensus 196 lc~kV~~~I~liDP~Tl~~~~l~~~~Ywr~pF~~l~~~~~Lvefi 240 (386)
|.+-.++.+|++|-.|..+.+|+.+..=-.-++.=+.+.+=++|.
T Consensus 8 Vlsi~Gd~vQ~MD~etyeTfelpi~~~v~ee~~~~l~~G~eVeYw 52 (67)
T d1iz6a2 8 VIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYW 52 (67)
T ss_dssp EEEECSSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEE
T ss_pred EEEEcCCeEEEeecCCceeEEEecCCCccHHHHhccCCCCEEEEE
Confidence 345558899999999999999976432222233334444445554
No 7
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=24.99 E-value=12 Score=26.11 Aligned_cols=21 Identities=19% Similarity=0.591 Sum_probs=17.7
Q ss_pred CeeeeecCCCCCCCCCcccchHh
Q 048420 12 KTVSCCKCGITMVSNASNMCVTC 34 (386)
Q Consensus 12 ~~ilCc~CG~~i~pn~~nmC~~C 34 (386)
..+.|..||.+. .+..+|.+|
T Consensus 28 ~l~~C~~CG~~~--lpHrvC~~C 48 (58)
T d2zjrz1 28 NLTECPQCHGKK--LSHHICPNC 48 (58)
T ss_dssp CCEECTTTCCEE--CTTBCCTTT
T ss_pred ceeECCCCCCCc--cceeeCCCC
Confidence 457899999976 588999999
No 8
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.26 E-value=89 Score=20.88 Aligned_cols=42 Identities=17% Similarity=-0.073 Sum_probs=30.8
Q ss_pred EEEEEeeeeccc-------cCCcEEEEEeecCCccCCCCeEee-eccccc
Q 048420 238 EYIVLDVKVAST-------ENDTILSTRTHLGHLLILGDYAIG-YDLHEA 279 (386)
Q Consensus 238 efiVldie~~~~-------~nd~~~~~rTHLG~iL~~GD~vlG-Ydl~~~ 279 (386)
+-.|--+|+.+. .+++.+.+|++-...+++||.|.- +|...+
T Consensus 9 ~~~V~~vE~lG~et~v~~~~~~~~i~~~~~~~~~~~~g~~i~l~~d~~~~ 58 (70)
T d1v43a2 9 IGKVDFVEALGTDTILHVKFGDELVKVKLPGHIPIEPGREVKVIMDLDMI 58 (70)
T ss_dssp EEEEEEEEECSSEEEEEEEETTEEEEEEEESCCCCCTTCEEEEEEEGGGC
T ss_pred EEEEEEEEcCCCCEEEEEEECCEEEEEEECCCCCCCCCCEEEEEECcccE
Confidence 345556677664 467889999999999999999854 454443
No 9
>d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=23.23 E-value=11 Score=29.95 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=22.7
Q ss_pred eeeecCCCCCCCCCcccchHhhhcccccc
Q 048420 14 VSCCKCGITMVSNASNMCVTCLKSEVDIT 42 (386)
Q Consensus 14 ilCc~CG~~i~pn~~nmC~~Cl~~~vdIt 42 (386)
-.|..||...-| +..+|..|......-.
T Consensus 40 ~~C~~CG~v~~P-pr~~Cp~C~s~~~e~~ 67 (137)
T d2gnra1 40 SKCSKCGRIFVP-ARSYCEHCFVKIENYV 67 (137)
T ss_dssp EECTTTCCEEES-CCSEETTTTEECCEEE
T ss_pred EEcCCCCCEEeC-ccccCCCCCCCcceeE
Confidence 469999998776 6789999988876654
No 10
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}
Probab=20.35 E-value=18 Score=25.79 Aligned_cols=15 Identities=47% Similarity=0.737 Sum_probs=12.1
Q ss_pred CCeeeeecCCCCCCC
Q 048420 11 RKTVSCCKCGITMVS 25 (386)
Q Consensus 11 ~~~ilCc~CG~~i~p 25 (386)
..||.|+.||.+...
T Consensus 4 ~~~v~CP~C~k~~~w 18 (65)
T d1lv3a_ 4 TITVNCPTCGKTVVW 18 (65)
T ss_dssp CCEEECTTTCCEEEC
T ss_pred CceeeCCCCCCcccc
Confidence 457999999998753
Done!