BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048427
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7GR00|HUTH_BACCN Histidine ammonia-lyase OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=hutH PE=3 SV=1
Length = 505
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 22/120 (18%)
Query: 73 KDYLAAVGRTFKKIDKAEKGNYLRLLANTQYDGVSGVREHILKMTSYHKKLKEMDVDLPD 132
+ + VG F ++ +G L L ANT GVSGVR ++ M L E
Sbjct: 80 QSHACGVGDPFP--EEVSRG-MLILRANTMLKGVSGVRPLVVNM------LLE------- 123
Query: 133 DYLVFQNLESLPPQFGNLRSQYNTQRDTWNITELTAYVVQEEESLKKGKSHTAIMATTQE 192
LV +N+ + PQ G+L D ++ L ++ E E KGK A++A T+E
Sbjct: 124 --LVNRNIHPVIPQQGSL----GASGDLAPLSHLALVLLGEGEVFYKGKRVHAMIALTEE 177
>sp|Q6ZWR6|SYNE1_MOUSE Nesprin-1 OS=Mus musculus GN=Syne1 PE=1 SV=2
Length = 8799
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 11 LTYCVAIGENFEDRRDSILFYLSTLNRDLALRVDEPAKPTDKSTAVEKAETTRDNIPACD 70
L + ++ E FE RDSIL +L+ + DL L E D +++ + + I
Sbjct: 8106 LKHFISQREEFETARDSILVWLTEM--DLQLTNIEHFSECDVQAKIKQLKAFQQEISLNH 8163
Query: 71 KAKDYLAAVGRTFKKIDKAEKGNYLRLLANTQYDGVSGVREHIL-KMTSYHKKLKEMDVD 129
+ + A G I+K+E + + + D + + + ++ YHKKL + V
Sbjct: 8164 NKIEQIIAQGEQL--IEKSEPLDAA--VIEEELDELRRYCQEVFGRVERYHKKLIRLPVR 8219
Query: 130 LPDDY 134
LPDD+
Sbjct: 8220 LPDDH 8224
>sp|Q02008|RIBB_PHOLE 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Photobacterium
leiognathi GN=ribB PE=3 SV=1
Length = 364
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%)
Query: 34 TLNRDLALRVDEPAKPTDKSTAVEKAETTRDNIPACDKAKDYLAAVGRTFKKIDKAEKGN 93
TLN L ++ + T + ++E A+ I A D+AK LAAV K D G+
Sbjct: 67 TLNLPLMVQGNNDNFSTPFTISIEAAKYVTTGISASDRAKTVLAAVAPNAKSTDIVMPGH 126
Query: 94 YLRLLA 99
L+A
Sbjct: 127 IFPLMA 132
>sp|B9L5Y8|PANC_NAUPA Pantothenate synthetase OS=Nautilia profundicola (strain ATCC
BAA-1463 / DSM 18972 / AmH) GN=panC PE=3 SV=1
Length = 272
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 30 FYLSTLNRDLALRVDEP----AKPTDKSTAVEKAETTRDNIPACDKAKDYLAAVGRTFKK 85
YLS R AL + + AK + K+ +E+ E I D+ + Y+A V R F
Sbjct: 186 IYLSEEERKRALSISKALKRAAKLSSKTKNIEEIEKEMLEILDVDELQ-YIAFVDRDFNH 244
Query: 86 IDKAEKGNYLRLLA 99
ID+ + GN + LLA
Sbjct: 245 IDEIKPGNTIILLA 258
>sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=4
Length = 8797
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 117 TSYHKKLKE-MDVDLPDDYLVFQNLESLPPQFGNLRSQYNTQRDTWNITELTAYVVQEEE 175
T HKKL E ++V + L+ Q+LE + + + +QY I TA+++ +E
Sbjct: 725 TEAHKKLSEPLEVSFMNVKLLIQDLEDIEQRVPVMDAQYK-------IITKTAHLITKES 777
Query: 176 SLKKGKSHTAIMATTQESGS-VKKCSS 201
++GK A M+ +E + VK+C S
Sbjct: 778 PQEEGKEMFATMSKLKEQLTKVKECYS 804
>sp|P13590|NCAM1_CHICK Neural cell adhesion molecule 1 OS=Gallus gallus GN=NCAM1 PE=1 SV=3
Length = 1091
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 90 EKGNYLRLLANTQYDGVSGVREHILKMTSYHKKLKEMDVDLPD--DYLVFQNLESLPPQF 147
E GN +++ Q DG S +R +++K + H + ++ LP D+++ ++L+
Sbjct: 612 EDGNSIKVNVIKQDDGGSPIRHYLIKYKAKHSSEWKPEIRLPSGIDHVMLKSLD------ 665
Query: 148 GNLRSQYNTQRDTWNITELTAYVVQEEESLKKGKSHTAIMATTQES 193
WN E YV+ E + K +H A + Q +
Sbjct: 666 -------------WN-AEYEVYVIAENQQGKSKPAHYAFRTSAQPT 697
>sp|A7I0P8|PANC_CAMHC Pantothenate synthetase OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=panC PE=3
SV=1
Length = 273
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 74 DYLAAVGRTFKKIDKAEKGNYLRLLA 99
DY+A V R FK+I K E GN + L+A
Sbjct: 234 DYIAFVDRNFKEISKIEVGNSIILVA 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,469,349
Number of Sequences: 539616
Number of extensions: 3728212
Number of successful extensions: 9720
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 9570
Number of HSP's gapped (non-prelim): 171
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)