Query 048427
Match_columns 261
No_of_seqs 125 out of 1402
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 16:20:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a6b_B Momulv, zinc finger pro 98.6 1.3E-08 4.6E-13 57.5 2.7 24 231-254 7-30 (40)
2 1u6p_A GAG polyprotein; MLV, A 98.6 2.8E-08 9.7E-13 60.6 4.1 25 231-255 20-44 (56)
3 1nc8_A Nucleocapsid protein; H 98.6 1.5E-08 5E-13 53.5 2.3 24 233-256 5-28 (29)
4 1dsq_A Nucleic acid binding pr 98.5 4.3E-08 1.5E-12 50.2 1.6 19 235-253 3-21 (26)
5 2ysa_A Retinoblastoma-binding 98.1 1.5E-06 5.2E-11 52.7 2.2 20 234-253 7-26 (55)
6 2ec7_A GAG polyprotein (PR55GA 97.5 3.1E-05 1.1E-09 46.0 2.0 21 234-254 27-47 (49)
7 2a51_A Nucleocapsid protein; s 97.5 2.6E-05 9E-10 44.0 1.4 18 236-253 2-19 (39)
8 2li8_A Protein LIN-28 homolog 97.5 8.3E-05 2.8E-09 48.2 3.5 20 234-253 46-65 (74)
9 2a51_A Nucleocapsid protein; s 97.5 3.7E-05 1.3E-09 43.3 1.5 19 234-252 21-39 (39)
10 2ec7_A GAG polyprotein (PR55GA 97.5 4.8E-05 1.6E-09 45.2 1.9 22 232-253 4-25 (49)
11 2bl6_A Nucleocapsid protein P1 97.4 4.9E-05 1.7E-09 42.3 1.4 16 237-252 3-18 (37)
12 2bl6_A Nucleocapsid protein P1 97.4 5.6E-05 1.9E-09 42.0 1.5 18 235-252 20-37 (37)
13 1a1t_A Nucleocapsid protein; s 97.3 6.1E-05 2.1E-09 46.0 1.4 20 234-253 33-52 (55)
14 1cl4_A Protein (GAG polyprotei 97.3 7.4E-05 2.5E-09 46.5 1.8 22 233-254 29-50 (60)
15 1a1t_A Nucleocapsid protein; s 97.3 8.9E-05 3.1E-09 45.2 1.8 22 232-253 10-31 (55)
16 2ihx_A Nucleocapsid (NC) prote 97.3 8.1E-05 2.8E-09 46.4 1.7 21 234-254 30-50 (61)
17 2ihx_A Nucleocapsid (NC) prote 97.2 0.00012 4E-09 45.7 1.9 21 234-254 4-24 (61)
18 2cqf_A RNA-binding protein LIN 97.2 0.00011 3.8E-09 46.1 1.6 27 233-259 28-55 (63)
19 3nyb_B Protein AIR2; polya RNA 97.2 0.00014 4.8E-09 48.2 1.8 23 232-254 44-66 (83)
20 2cqf_A RNA-binding protein LIN 97.1 0.00027 9.2E-09 44.3 2.9 20 234-253 7-26 (63)
21 1cl4_A Protein (GAG polyprotei 97.0 0.00011 3.6E-09 45.7 0.0 18 236-253 3-20 (60)
22 2li8_A Protein LIN-28 homolog 97.0 0.00025 8.6E-09 45.9 1.7 22 231-252 21-42 (74)
23 3ts2_A Protein LIN-28 homolog 96.7 0.00069 2.4E-08 50.2 2.6 21 234-254 119-139 (148)
24 3ts2_A Protein LIN-28 homolog 96.7 0.00061 2.1E-08 50.5 2.0 23 231-253 94-116 (148)
25 3nyb_B Protein AIR2; polya RNA 96.5 0.00064 2.2E-08 45.0 0.9 21 233-253 4-24 (83)
26 2lli_A Protein AIR2; RNA surve 96.1 0.002 6.8E-08 46.2 1.8 22 232-253 103-124 (124)
27 2hqh_E Restin; beta/BETA struc 95.2 0.0052 1.8E-07 30.3 0.7 20 234-253 3-22 (26)
28 2lli_A Protein AIR2; RNA surve 94.4 0.015 5.2E-07 41.5 1.8 20 234-253 64-83 (124)
29 2pzo_E CAP-Gly domain-containi 89.1 0.11 3.7E-06 28.7 0.7 22 232-253 18-39 (42)
30 3e2u_E CAP-Gly domain-containi 85.5 0.25 8.6E-06 27.4 0.8 21 233-253 19-39 (42)
31 3alr_A Nanos protein; zinc-fin 71.4 1.4 4.9E-05 29.6 1.2 22 233-254 70-94 (106)
32 3tir_A ROUS sarcoma virus caps 65.8 46 0.0016 26.0 9.0 85 72-171 136-223 (226)
33 3g1g_A GAG polyprotein, capsid 62.0 29 0.00099 22.5 5.9 73 98-174 3-76 (87)
34 2fi2_A Zinc finger protein 42; 60.8 26 0.00088 23.2 5.6 73 94-170 9-85 (94)
35 1y7q_A AW-1, zinc finger prote 52.2 16 0.00054 24.5 3.5 73 94-170 11-87 (98)
36 1wfl_A Zinc finger protein 216 48.8 40 0.0014 21.2 4.8 21 231-251 22-43 (74)
37 3g21_A GAG polyprotein, capsid 44.6 28 0.00096 22.1 3.6 24 98-121 4-27 (77)
38 3lhr_A Zinc finger protein 24; 40.1 78 0.0027 20.8 7.7 74 93-170 7-84 (93)
39 4e6s_A Zinc finger and SCAN do 39.5 58 0.002 21.5 4.7 71 94-168 8-82 (93)
40 1ufz_A Hypothetical protein BA 38.8 77 0.0026 20.4 6.7 44 115-175 33-77 (83)
41 1wg2_A Zinc finger (AN1-like) 37.4 39 0.0013 20.6 3.3 18 233-250 14-32 (64)
42 1ef4_A Subunit N, DNA-directed 37.2 11 0.00037 22.3 0.8 10 234-243 3-12 (55)
43 3ds4_A HIV-1 capsid protein; H 36.7 80 0.0027 20.4 5.1 69 98-170 5-73 (86)
44 3zyq_A Hepatocyte growth facto 36.1 57 0.0019 25.3 5.1 68 50-120 24-97 (226)
45 4ayb_N DNA-directed RNA polyme 34.4 11 0.00038 23.2 0.5 10 234-243 4-13 (66)
46 2xzm_5 Ribosomal protein S26E 32.6 18 0.0006 25.0 1.4 12 231-242 17-28 (119)
47 3kyj_A CHEA3, putative histidi 31.2 1.4E+02 0.0048 21.2 9.0 84 88-173 41-131 (144)
48 3u5c_a 40S ribosomal protein S 30.3 21 0.0007 24.7 1.4 12 231-242 17-28 (119)
49 2czy_A Paired amphipathic heli 29.9 1E+02 0.0036 19.3 6.7 69 69-148 4-72 (77)
50 2w0t_A Lethal(3)malignant brai 29.3 9.6 0.00033 21.3 -0.3 16 233-248 5-20 (43)
51 1twf_J DNA-directed RNA polyme 28.6 16 0.00054 22.8 0.5 10 234-243 4-13 (70)
52 1wfp_A Zinc finger (AN1-like) 28.3 1.1E+02 0.0039 19.1 4.5 20 231-250 22-42 (74)
53 1vhf_A Periplasmic divalent ca 28.1 16 0.00055 25.2 0.6 27 2-28 74-101 (113)
54 2yrk_A Zinc finger homeobox pr 27.9 39 0.0013 19.8 2.1 13 231-243 10-22 (55)
55 2ds5_A CLPX, ATP-dependent CLP 27.2 23 0.0008 20.5 1.1 12 235-246 12-23 (51)
56 1tdp_A Carnobacteriocin B2 imm 26.4 1.1E+02 0.0039 20.8 4.5 37 72-108 5-43 (111)
57 2nuh_A Periplasmic divalent ca 26.3 19 0.00067 25.0 0.7 27 2-28 77-104 (118)
58 2poi_A Baculoviral IAP repeat- 25.6 18 0.00063 23.9 0.5 11 232-242 53-63 (94)
59 1ovx_A ATP-dependent CLP prote 24.6 21 0.0007 22.1 0.5 12 234-245 18-29 (67)
60 3kxe_C Antitoxin protein PARD- 23.7 1.1E+02 0.0037 19.8 4.0 30 142-171 9-38 (88)
61 2qra_D XIAP, baculoviral IAP r 23.6 21 0.00072 24.5 0.5 11 232-242 70-80 (111)
62 2yqp_A Probable ATP-dependent 23.6 97 0.0033 18.3 3.2 17 232-248 17-33 (60)
63 2vm5_A Baculoviral IAP repeat- 23.4 21 0.00073 24.2 0.5 11 232-242 54-64 (106)
64 3m1d_A Baculoviral IAP repeat- 23.3 22 0.00074 23.1 0.5 12 232-243 44-55 (85)
65 3a4c_A DNA replication factor 22.9 43 0.0015 22.7 1.9 41 131-171 3-44 (106)
66 4ayb_P DNA-directed RNA polyme 22.9 23 0.0008 20.1 0.5 12 231-242 20-31 (48)
67 1jd5_A DIAP1, apoptosis 1 inhi 22.1 23 0.0008 24.8 0.5 11 232-242 58-68 (124)
68 1g73_C Inhibitors of apoptosis 21.8 24 0.00082 24.6 0.5 11 232-242 58-68 (121)
69 2cr7_A Paired amphipathic heli 21.7 1.6E+02 0.0055 18.6 7.0 69 69-148 10-78 (80)
70 2oxl_A Hypothetical protein YM 21.6 1.1E+02 0.0039 18.5 3.5 34 113-146 7-40 (64)
71 1qrj_B HTLV-I capsid protein; 21.5 1.9E+02 0.0065 21.9 5.5 84 72-168 102-185 (199)
72 3d9t_A Baculoviral IAP repeat- 21.1 26 0.00087 23.3 0.5 11 232-242 46-56 (97)
73 1wfh_A Zinc finger (AN1-like) 20.7 1.2E+02 0.004 18.5 3.3 18 233-250 14-32 (64)
74 3izc_n 60S ribosomal protein R 20.6 64 0.0022 20.5 2.2 19 129-147 55-73 (78)
75 1i4o_C X-linked IAP, baculovir 20.6 26 0.00088 25.2 0.5 11 232-242 76-86 (141)
76 2cot_A Zinc finger protein 435 20.6 77 0.0026 18.9 2.8 12 232-243 16-27 (77)
77 3hl5_A Baculoviral IAP repeat- 20.5 27 0.00091 23.2 0.5 13 231-243 43-55 (95)
78 3mup_A Baculoviral IAP repeat- 20.3 27 0.00092 24.4 0.5 13 231-243 51-63 (122)
79 1e91_A Paired amphipathic heli 20.3 1.8E+02 0.0061 18.6 6.9 69 69-147 7-84 (85)
No 1
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.65 E-value=1.3e-08 Score=57.47 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.8
Q ss_pred CCCCccceeccccCcccccCCCCc
Q 048427 231 ESFKRKCHFCKKLGHKRELNAGDS 254 (261)
Q Consensus 231 ~~~~~~C~~C~~~GH~~~~C~~~~ 254 (261)
......||+||+.|||+++||+..
T Consensus 7 ~~~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 7 QLDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SCCSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCCCeeeECCCCCcchhhCcCCc
Confidence 445678999999999999999984
No 2
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.64 E-value=2.8e-08 Score=60.56 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=21.7
Q ss_pred CCCCccceeccccCcccccCCCCcc
Q 048427 231 ESFKRKCHFCKKLGHKRELNAGDSK 255 (261)
Q Consensus 231 ~~~~~~C~~C~~~GH~~~~C~~~~~ 255 (261)
......||+||+.|||+++||++.+
T Consensus 20 ~~~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 20 QLDRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TCCTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCCCcceeCCCCCcccccCcCCcc
Confidence 5567789999999999999999844
No 3
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.62 E-value=1.5e-08 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.3
Q ss_pred CCccceeccccCcccccCCCCccc
Q 048427 233 FKRKCHFCKKLGHKRELNAGDSKH 256 (261)
Q Consensus 233 ~~~~C~~C~~~GH~~~~C~~~~~~ 256 (261)
+...||+||+.||++++|+...+.
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~prkk 28 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRAPRRQ 28 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCSSSSC
T ss_pred CCCEEEECCccccCHhHCcccccC
Confidence 457799999999999999987543
No 4
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.48 E-value=4.3e-08 Score=50.24 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=17.6
Q ss_pred ccceeccccCcccccCCCC
Q 048427 235 RKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 235 ~~C~~C~~~GH~~~~C~~~ 253 (261)
..||+||+.||++++||..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 5699999999999999986
No 5
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.07 E-value=1.5e-06 Score=52.65 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.6
Q ss_pred CccceeccccCcccccCCCC
Q 048427 234 KRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~~ 253 (261)
...||.||++|||+++||..
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 45799999999999999954
No 6
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.55 E-value=3.1e-05 Score=46.02 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=16.6
Q ss_pred CccceeccccCcccccCCCCc
Q 048427 234 KRKCHFCKKLGHKRELNAGDS 254 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~~~ 254 (261)
...||.||+.||++++||.+.
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCSSC
T ss_pred CCeeCcCCCcCCccCCCcCCC
Confidence 467888888888888888763
No 7
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.54 E-value=2.6e-05 Score=43.95 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=11.7
Q ss_pred cceeccccCcccccCCCC
Q 048427 236 KCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 236 ~C~~C~~~GH~~~~C~~~ 253 (261)
.||+|++.||++++||..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 466666666666666653
No 8
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.49 E-value=8.3e-05 Score=48.18 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=14.5
Q ss_pred CccceeccccCcccccCCCC
Q 048427 234 KRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~~ 253 (261)
...||+|++.||++++||..
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp CCCCTTTCCTTSCGGGCTTG
T ss_pred CCccCCcCCcCCccCcCcCC
Confidence 45677777777777777765
No 9
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.47 E-value=3.7e-05 Score=43.32 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=17.2
Q ss_pred CccceeccccCcccccCCC
Q 048427 234 KRKCHFCKKLGHKRELNAG 252 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~ 252 (261)
...||.||+.||++++||+
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 4679999999999999985
No 10
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.46 E-value=4.8e-05 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=18.9
Q ss_pred CCCccceeccccCcccccCCCC
Q 048427 232 SFKRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 232 ~~~~~C~~C~~~GH~~~~C~~~ 253 (261)
+....||+||+.||++++|+..
T Consensus 4 ~r~~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 4 RKVIRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CCCCBCTTTCCBTCCTTTCCCS
T ss_pred CCcCeeeecCCCCcChhhCcCC
Confidence 3456799999999999999975
No 11
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.41 E-value=4.9e-05 Score=42.27 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=9.7
Q ss_pred ceeccccCcccccCCC
Q 048427 237 CHFCKKLGHKRELNAG 252 (261)
Q Consensus 237 C~~C~~~GH~~~~C~~ 252 (261)
||+|+++||++++||.
T Consensus 3 C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCRA 18 (37)
T ss_dssp BSSSCCSSCCTTTSSC
T ss_pred ccccCCCCcchhhCcC
Confidence 6666666666666654
No 12
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.39 E-value=5.6e-05 Score=42.02 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=16.7
Q ss_pred ccceeccccCcccccCCC
Q 048427 235 RKCHFCKKLGHKRELNAG 252 (261)
Q Consensus 235 ~~C~~C~~~GH~~~~C~~ 252 (261)
..||.|+++||++++||.
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 679999999999999984
No 13
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.34 E-value=6.1e-05 Score=45.95 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=14.8
Q ss_pred CccceeccccCcccccCCCC
Q 048427 234 KRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~~ 253 (261)
...||.||+.||++++||..
T Consensus 33 ~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 33 KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CCBCTTTCCBSSCGGGCSSS
T ss_pred CCEeCCCCCcCCccCCCcCc
Confidence 45677777777777777765
No 14
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.33 E-value=7.4e-05 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.3
Q ss_pred CCccceeccccCcccccCCCCc
Q 048427 233 FKRKCHFCKKLGHKRELNAGDS 254 (261)
Q Consensus 233 ~~~~C~~C~~~GH~~~~C~~~~ 254 (261)
....||.|++.||++++|+...
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CCcceeECCCCCCccCcCCCcc
Confidence 3567999999999999999873
No 15
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.30 E-value=8.9e-05 Score=45.20 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.0
Q ss_pred CCCccceeccccCcccccCCCC
Q 048427 232 SFKRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 232 ~~~~~C~~C~~~GH~~~~C~~~ 253 (261)
.....||+|++.||++++|+..
T Consensus 10 ~~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 10 RKTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GGTCBCTTTCCBSSCGGGCSSC
T ss_pred CCCcceeeeCCCCcChhhcCCC
Confidence 4456799999999999999975
No 16
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.30 E-value=8.1e-05 Score=46.43 Aligned_cols=21 Identities=19% Similarity=0.692 Sum_probs=18.8
Q ss_pred CccceeccccCcccccCCCCc
Q 048427 234 KRKCHFCKKLGHKRELNAGDS 254 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~~~ 254 (261)
...||+|++.||++++||...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 467999999999999999874
No 17
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.24 E-value=0.00012 Score=45.70 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.5
Q ss_pred CccceeccccCcccccCCCCc
Q 048427 234 KRKCHFCKKLGHKRELNAGDS 254 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~~~ 254 (261)
...||+|++.||++++||...
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTT
T ss_pred CCcccccCCCCeehhhCcCCc
Confidence 356999999999999999863
No 18
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.21 E-value=0.00011 Score=46.11 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=20.9
Q ss_pred CCccceeccccCcccccCCCCc-ccccc
Q 048427 233 FKRKCHFCKKLGHKRELNAGDS-KHGWK 259 (261)
Q Consensus 233 ~~~~C~~C~~~GH~~~~C~~~~-~~~~~ 259 (261)
....||+|++.||++++||... +-.|+
T Consensus 28 ~~~~C~~Cg~~GH~ar~Cp~~~~~~~~~ 55 (63)
T 2cqf_A 28 QPKKCHFCQSISHMVASCPLKAQQGPSA 55 (63)
T ss_dssp CSSCCTTTCCSSSCTTTCTGGGCSCCCC
T ss_pred CCCccCCcCCcCCccCcCCCccccCCcc
Confidence 4578999999999999999863 33444
No 19
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00014 Score=48.16 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.7
Q ss_pred CCCccceeccccCcccccCCCCc
Q 048427 232 SFKRKCHFCKKLGHKRELNAGDS 254 (261)
Q Consensus 232 ~~~~~C~~C~~~GH~~~~C~~~~ 254 (261)
.....|++||+.||+.++||+..
T Consensus 44 ~~~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 44 FHTIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp -CCCBCSSSSCBSSCGGGCSSCC
T ss_pred CCCCeecccCCCCcCcccCCccc
Confidence 34578999999999999999874
No 20
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.14 E-value=0.00027 Score=44.30 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=17.6
Q ss_pred CccceeccccCcccccCCCC
Q 048427 234 KRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~~ 253 (261)
...||+|++.||++++|+..
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~~ 26 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKLP 26 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCSC
T ss_pred CCcccccCCCCcChhhCCCC
Confidence 35699999999999999963
No 21
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.00 E-value=0.00011 Score=45.74 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=0.0
Q ss_pred cceeccccCcccccCCCC
Q 048427 236 KCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 236 ~C~~C~~~GH~~~~C~~~ 253 (261)
.||+|+++||++++||..
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp ------------------
T ss_pred ccccCCCCCcCHhhCcCC
Confidence 599999999999999986
No 22
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=96.99 E-value=0.00025 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.0
Q ss_pred CCCCccceeccccCcccccCCC
Q 048427 231 ESFKRKCHFCKKLGHKRELNAG 252 (261)
Q Consensus 231 ~~~~~~C~~C~~~GH~~~~C~~ 252 (261)
......||+|++.||++++|+.
T Consensus 21 ~~r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 21 RSKGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp CSTTSCCTTTCCSSSCTTTCSS
T ss_pred cCCCCcccccCCcCcCcccCCC
Confidence 3455679999999999999996
No 23
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.74 E-value=0.00069 Score=50.17 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=14.1
Q ss_pred CccceeccccCcccccCCCCc
Q 048427 234 KRKCHFCKKLGHKRELNAGDS 254 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~~~ 254 (261)
...||+|++.||++++||...
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~ 139 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKA 139 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTT
T ss_pred CCcccccCCcCCEeccCcCCC
Confidence 456777777777777777653
No 24
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.70 E-value=0.00061 Score=50.49 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=19.6
Q ss_pred CCCCccceeccccCcccccCCCC
Q 048427 231 ESFKRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 231 ~~~~~~C~~C~~~GH~~~~C~~~ 253 (261)
++....||+|++.||++++|+..
T Consensus 94 p~~~~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 94 PKGGDRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp CCCSCCCTTTCCSSCCGGGCCSC
T ss_pred cCCCCcccEeCCccchhhhCCCC
Confidence 34467899999999999999983
No 25
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.00064 Score=44.97 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=16.3
Q ss_pred CCccceeccccCcccccCCCC
Q 048427 233 FKRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 233 ~~~~C~~C~~~GH~~~~C~~~ 253 (261)
++..|++|+..||++++||..
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGG
T ss_pred ccCCCCCCCCCCCccccCCCc
Confidence 456799999999999999875
No 26
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.002 Score=46.24 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.2
Q ss_pred CCCccceeccccCcccccCCCC
Q 048427 232 SFKRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 232 ~~~~~C~~C~~~GH~~~~C~~~ 253 (261)
...+.|++|++.||++++||+.
T Consensus 103 ~~~~~Cy~Cg~~GH~a~dCp~~ 124 (124)
T 2lli_A 103 FHTIYCYNCGGKGHFGDDCKEK 124 (124)
T ss_dssp CCCCCTTTTSSSCTTTTTSCCC
T ss_pred CCCCCcCCCCCCCcCcccCcCC
Confidence 4567899999999999999973
No 27
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=95.19 E-value=0.0052 Score=30.28 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=17.2
Q ss_pred CccceeccccCcccccCCCC
Q 048427 234 KRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~~ 253 (261)
++-|-.|...||+..+|..-
T Consensus 3 RpYCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 3 RPYCEICEMFGHWATNCNDD 22 (26)
T ss_dssp -CEETTTTEESSCGGGCCTT
T ss_pred CccchHHHHhCcccccCCcc
Confidence 46799999999999999765
No 28
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.015 Score=41.54 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.0
Q ss_pred CccceeccccCcccccCCCC
Q 048427 234 KRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 234 ~~~C~~C~~~GH~~~~C~~~ 253 (261)
...|+.|+..||++++||..
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCS
T ss_pred CccCCCCCcCCcchhhCCCc
Confidence 46899999999999999976
No 29
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=89.15 E-value=0.11 Score=28.69 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=17.4
Q ss_pred CCCccceeccccCcccccCCCC
Q 048427 232 SFKRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 232 ~~~~~C~~C~~~GH~~~~C~~~ 253 (261)
..++-|-.|...|||..+|..-
T Consensus 18 ~eRpYCd~CEvFGH~t~~Cndd 39 (42)
T 2pzo_E 18 EERPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp ---CEETTTTEESSCGGGCCTT
T ss_pred cCCcccccccccCcccccCCcc
Confidence 4567899999999999999764
No 30
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=85.46 E-value=0.25 Score=27.35 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.2
Q ss_pred CCccceeccccCcccccCCCC
Q 048427 233 FKRKCHFCKKLGHKRELNAGD 253 (261)
Q Consensus 233 ~~~~C~~C~~~GH~~~~C~~~ 253 (261)
.+.-|-.|-..|||..+|..-
T Consensus 19 eRpYCe~CEVFGH~t~eC~dd 39 (42)
T 3e2u_E 19 ERPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp -CCEETTTTEESSCGGGCCTT
T ss_pred cCcccccceecccccccCCcc
Confidence 467899999999999999865
No 31
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=71.38 E-value=1.4 Score=29.62 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=18.4
Q ss_pred CCccceeccccC---cccccCCCCc
Q 048427 233 FKRKCHFCKKLG---HKRELNAGDS 254 (261)
Q Consensus 233 ~~~~C~~C~~~G---H~~~~C~~~~ 254 (261)
....|-.||..| |+.+.||...
T Consensus 70 R~Y~CpiCGATGd~AHT~kYCP~~~ 94 (106)
T 3alr_A 70 RQYKCPLCGATGAKAHTKRFCPMVD 94 (106)
T ss_dssp GGCCCTTTCCCGGGCCCGGGCTTCG
T ss_pred ccccCCCCCCcCCcccceecCCCCC
Confidence 346899999999 9999999764
No 32
>3tir_A ROUS sarcoma virus capsid protein P27; viral capsid protein, viral protein; 4.10A {Rous sarcoma virus} PDB: 2x8q_A
Probab=65.79 E-value=46 Score=25.97 Aligned_cols=85 Identities=11% Similarity=-0.072 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHhCCCc-hHHH
Q 048427 72 AKDYLAAVGRTFKKIDKAEKGNYLRLLANTQYDGVSGVREHILKMTSYHKKLKEMDVDLPDDYLVFQNLESLPPQ-FGNL 150 (261)
Q Consensus 72 a~~lW~~L~~~y~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~~~l~~l~~~L~~~g~~~~d~~~~~~lL~~Lp~~-~~~~ 150 (261)
|-..|.+|...+..... |..+++...+++.+|+.+|...... ...+......++..|--. =.+.
T Consensus 136 ai~aw~~l~~~~~~~~~---------~~~I~QGp~Epf~dfv~rl~~a~~~------~~~~~~~~~~~~~~l~~qNAN~~ 200 (226)
T 3tir_A 136 ALQAFREVARLAEPAGP---------WADIMQGPSESFVDFANRLIKAVEG------SDLPPSARAPVIIDCFRQKSQPD 200 (226)
T ss_dssp HHHHHHHHHHHC----C---------GGGCCCCTTCCHHHHHHHHHHHHHT------SSSCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHhccccCCCCcc---------hhHhhcCCCCcHHHHHHHHHHHHHH------HcCcHHHHHHHHHHHHHHhCCHH
Confidence 45677777777765543 6778889999999999999876552 333444444444443110 0111
Q ss_pred H-HHHhcC-CCCCCHHHHHHHHH
Q 048427 151 R-SQYNTQ-RDTWNITELTAYVV 171 (261)
Q Consensus 151 ~-~~~~~~-~~~~t~~~l~~~l~ 171 (261)
. ..+... ++.++.+|++..++
T Consensus 201 ck~il~~~~~~~~~~~e~i~~~~ 223 (226)
T 3tir_A 201 IQQLIRTAPSTLTTPGEIIKYVL 223 (226)
T ss_dssp HHHHHHTSCTTCCSHHHHHHHHH
T ss_pred HHHHHHhCCCCCCChHHHHHHHh
Confidence 2 223322 45556688888774
No 33
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=62.00 E-value=29 Score=22.54 Aligned_cols=73 Identities=8% Similarity=0.055 Sum_probs=39.3
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHhCCCchHHHHHHHhcC-CCCCCHHHHHHHHHHHH
Q 048427 98 LANTQYDGVSGVREHILKMTSYHKKLKEMDVDLPDDYLVFQNLESLPPQFGNLRSQYNTQ-RDTWNITELTAYVVQEE 174 (261)
Q Consensus 98 l~~~~~~~~~~v~~~~~~l~~l~~~L~~~g~~~~d~~~~~~lL~~Lp~~~~~~~~~~~~~-~~~~t~~~l~~~l~~~e 174 (261)
|.++++...+++.+|+++|......= ..-..+.+.+.-..+...-.+.- ...+... .+.++.+|++..++..+
T Consensus 3 ~tdI~QGPkEPF~dfVdRl~kal~~e-q~~~~vK~~m~~tLlvQNANpdC---k~Il~~~~~~~~~~~e~Ik~~l~~~ 76 (87)
T 3g1g_A 3 WADIMQGPSESFVDFANRLIKAVEGS-DLPPSARAPVIIDCFRQKSQPDI---QQLIRTAPSTLTTPGEIIKYVLDRQ 76 (87)
T ss_dssp TTTCCCCTTCCHHHHHHHHHHHHHHS-SSCGGGHHHHHHHHHHHHSCHHH---HHHHHTSCTTCCSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHhcCHHH---HHHHHhCCCCCCChHHHHHHHHHHh
Confidence 45678888999999999998764421 11112223333333332222221 1222222 45556699998886554
No 34
>2fi2_A Zinc finger protein 42; SCAN domain, ZNF-42, MZF-1, homodimer, transcription factor, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=60.79 E-value=26 Score=23.24 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=53.2
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCC----CCCChHHHHHHHHHhCCCchHHHHHHHhcCCCCCCHHHHHHH
Q 048427 94 YLRLLANTQYDGVSGVREHILKMTSYHKKLKEMD----VDLPDDYLVFQNLESLPPQFGNLRSQYNTQRDTWNITELTAY 169 (261)
Q Consensus 94 l~~~l~~~~~~~~~~v~~~~~~l~~l~~~L~~~g----~~~~d~~~~~~lL~~Lp~~~~~~~~~~~~~~~~~t~~~l~~~ 169 (261)
....|..+.|.+..+..+-+.++..++.+=-.-. ..|-|-+....||.-||.+....+..-. +-+-++++..
T Consensus 9 ~rq~FR~f~y~e~~gPreaL~rLreLc~qWLrPe~hTKEQIlElLVLEQFL~iLP~eiq~wV~~~~----P~s~eeav~l 84 (94)
T 2fi2_A 9 ARLRFRCFHYEEATGPQEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQR----PGSPEEAAAL 84 (94)
T ss_dssp HHHHHHSCCCCTTTCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHC----CCSHHHHHHH
T ss_pred HHHhcccCCCCCCCCHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHhCcHHHHHHHHhcC----CCcHHHHHHH
Confidence 4567899999999999999999999988753322 2244566788889999999887765332 3366677666
Q ss_pred H
Q 048427 170 V 170 (261)
Q Consensus 170 l 170 (261)
+
T Consensus 85 v 85 (94)
T 2fi2_A 85 V 85 (94)
T ss_dssp H
T ss_pred H
Confidence 5
No 35
>1y7q_A AW-1, zinc finger protein 174; SCAN domain, retroviral capsid C-terminal domain, dimer, C2H2 zinc finger associated, transcription; NMR {Homo sapiens} SCOP: a.28.3.2
Probab=52.19 E-value=16 Score=24.45 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=53.3
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCC----CCCChHHHHHHHHHhCCCchHHHHHHHhcCCCCCCHHHHHHH
Q 048427 94 YLRLLANTQYDGVSGVREHILKMTSYHKKLKEMD----VDLPDDYLVFQNLESLPPQFGNLRSQYNTQRDTWNITELTAY 169 (261)
Q Consensus 94 l~~~l~~~~~~~~~~v~~~~~~l~~l~~~L~~~g----~~~~d~~~~~~lL~~Lp~~~~~~~~~~~~~~~~~t~~~l~~~ 169 (261)
....|..+.|.+..+..+-+.++..++.+=-.-. ..|-|-+....||.-||.+....+. ...+-|-++++..
T Consensus 11 ~rq~FR~f~y~e~~gPreaL~rLreLC~qWLrPe~hTKEQIlElLVLEQFL~iLP~eiq~wV~----~~~P~s~eeav~l 86 (98)
T 1y7q_A 11 CRQSFRRFCYQEVSGPQEALSQLRQLCRQWLQPELHTKEQILELLVMEQFLTILPEEIQARVR----HRCLMSSKEIVTL 86 (98)
T ss_dssp HHHHHHTCCSCSCCSSHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHSCTHHHHHHH----TSCCCCHHHHHHH
T ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHh----ccCCCcHHHHHHH
Confidence 4567889999999999999999999988753321 2244566788889999999877654 2234477777776
Q ss_pred H
Q 048427 170 V 170 (261)
Q Consensus 170 l 170 (261)
+
T Consensus 87 v 87 (98)
T 1y7q_A 87 V 87 (98)
T ss_dssp H
T ss_pred H
Confidence 6
No 36
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=48.81 E-value=40 Score=21.20 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=14.5
Q ss_pred CCCCccceecccc-CcccccCC
Q 048427 231 ESFKRKCHFCKKL-GHKRELNA 251 (261)
Q Consensus 231 ~~~~~~C~~C~~~-GH~~~~C~ 251 (261)
.....+|+.|++. |=+.-.|+
T Consensus 22 k~~~nRC~~CrKkvgL~gf~Cr 43 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVGLTGFDCR 43 (74)
T ss_dssp CSCTTBCSSSCCBCGGGCEECT
T ss_pred CCcCCcChhhCCcccccCeecC
Confidence 3345689999996 65556665
No 37
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=44.56 E-value=28 Score=22.07 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=19.7
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHH
Q 048427 98 LANTQYDGVSGVREHILKMTSYHK 121 (261)
Q Consensus 98 l~~~~~~~~~~v~~~~~~l~~l~~ 121 (261)
|.++++...+++.+|+++|.....
T Consensus 4 ~tdI~QGPkEPF~dfVdRl~kal~ 27 (77)
T 3g21_A 4 WADIMQGPSESFVDFANRLIKAVE 27 (77)
T ss_dssp GGGCCCCTTCCHHHHHHHHHHHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHH
Confidence 567788899999999999986544
No 38
>3lhr_A Zinc finger protein 24; SCAN domain, protein structure initiative, center for eukary structural genomics, PSI-2, CESG, nucleus, phosphoprotein; 1.90A {Homo sapiens} SCOP: a.28.3.0
Probab=40.12 E-value=78 Score=20.84 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=52.3
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCC----CChHHHHHHHHHhCCCchHHHHHHHhcCCCCCCHHHHHH
Q 048427 93 NYLRLLANTQYDGVSGVREHILKMTSYHKKLKEMDVD----LPDDYLVFQNLESLPPQFGNLRSQYNTQRDTWNITELTA 168 (261)
Q Consensus 93 ~l~~~l~~~~~~~~~~v~~~~~~l~~l~~~L~~~g~~----~~d~~~~~~lL~~Lp~~~~~~~~~~~~~~~~~t~~~l~~ 168 (261)
.....|..+.+.+..+..+.+.++..++.+=-.-.+- |-|-.+...||..||.+-...+..-. +-|-+++..
T Consensus 7 ~~rq~FR~f~y~e~~gp~eal~~L~eLc~~WLrPe~htKEQileLLVLEQFL~ilP~e~q~wv~~~~----p~s~~eav~ 82 (93)
T 3lhr_A 7 IFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVRDHH----PENGEEAVT 82 (93)
T ss_dssp HHHHHHHHCCGGGSSSHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTC----CSSHHHHHH
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhC----CCCHHHHHH
Confidence 3466788999999999999999999998875433322 23445677888899998877665433 336666665
Q ss_pred HH
Q 048427 169 YV 170 (261)
Q Consensus 169 ~l 170 (261)
.+
T Consensus 83 l~ 84 (93)
T 3lhr_A 83 VL 84 (93)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 39
>4e6s_A Zinc finger and SCAN domain-containing protein 10; protein interaction, other scans, N-terminal PA finger transcription factor, transcription; 1.85A {Mus musculus}
Probab=39.46 E-value=58 Score=21.49 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=47.7
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCC----CChHHHHHHHHHhCCCchHHHHHHHhcCCCCCCHHHHHH
Q 048427 94 YLRLLANTQYDGVSGVREHILKMTSYHKKLKEMDVD----LPDDYLVFQNLESLPPQFGNLRSQYNTQRDTWNITELTA 168 (261)
Q Consensus 94 l~~~l~~~~~~~~~~v~~~~~~l~~l~~~L~~~g~~----~~d~~~~~~lL~~Lp~~~~~~~~~~~~~~~~~t~~~l~~ 168 (261)
....|..+.+.+..+..+.+.++..++.+=-.-..- |-|-.+...||..||.+-...+. ...+-|-+++..
T Consensus 8 ~rq~Fr~f~y~e~~gPreal~~L~eLc~~WLrPe~htKEQIleLLVLEQFL~ilP~e~q~wv~----~~~p~s~eeav~ 82 (93)
T 4e6s_A 8 AHQLFRCFQYQEDMGPRASLGRLRELCNHWLRPALHTKKQILELLVLEQFLSVLPPHVLSRLH----GAPLRDGEEVAQ 82 (93)
T ss_dssp HHHHHHTCCCCTTTCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHTSCHHHHGGGT----TCCCSCHHHHHH
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHhCCHHHHHHHH----HhCCCcHHHHHH
Confidence 466788999999999999999999998875433322 22444567778888876554332 223335666555
No 40
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=38.81 E-value=77 Score=20.38 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=30.9
Q ss_pred HHHHHHHHHHh-CCCCCChHHHHHHHHHhCCCchHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 048427 115 KMTSYHKKLKE-MDVDLPDDYLVFQNLESLPPQFGNLRSQYNTQRDTWNITELTAYVVQEEE 175 (261)
Q Consensus 115 ~l~~l~~~L~~-~g~~~~d~~~~~~lL~~Lp~~~~~~~~~~~~~~~~~t~~~l~~~l~~~e~ 175 (261)
+|.+-.++|+. +|..+||..++..+|. ....++..++.++..+.
T Consensus 33 rL~SCLd~iR~VlGdsV~e~~Lv~ailk-----------------~dfD~ekALd~vL~~~~ 77 (83)
T 1ufz_A 33 RLYSCLDHMREVLGDAVPDDILTEAILK-----------------HKFDVQKALSVVLEQDG 77 (83)
T ss_dssp HHHHHHHHHHHHTTTTSCHHHHHHHHHH-----------------TTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHH-----------------hcCCHHHHHHHHHhccc
Confidence 44555666655 6889999999988887 34466777777765553
No 41
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=37.41 E-value=39 Score=20.62 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=10.1
Q ss_pred CCccceecccc-CcccccC
Q 048427 233 FKRKCHFCKKL-GHKRELN 250 (261)
Q Consensus 233 ~~~~C~~C~~~-GH~~~~C 250 (261)
...+|..|++. |=+.-.|
T Consensus 14 ~~~rC~~C~kkvgl~~f~C 32 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC 32 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC
T ss_pred cCCcChhhCCcccccCeEe
Confidence 34567777774 4434445
No 42
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=37.16 E-value=11 Score=22.32 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=8.2
Q ss_pred Cccceecccc
Q 048427 234 KRKCHFCKKL 243 (261)
Q Consensus 234 ~~~C~~C~~~ 243 (261)
.++||-||++
T Consensus 3 PVRCFTCGkv 12 (55)
T 1ef4_A 3 PVRCLSCGKP 12 (55)
T ss_dssp SSSCSCTTSC
T ss_pred CeecCCCCCC
Confidence 3679999986
No 43
>3ds4_A HIV-1 capsid protein; HIV, mutant, polyprotein, complex(viral protein/peptide), mainly alpha; 1.12A {Human immunodeficiency virus 1} PDB: 3dph_A 1a43_A 2xt1_A 2buo_A 3lry_A 2kod_A 3ds1_A 3dtj_A 3ds0_A 3ds5_A 3ds2_A 3ds3_A 2jo0_A 2jyg_A 2xxm_A 2xv6_A 2ont_A 1aum_A 1a8o_A 4arg_B ...
Probab=36.68 E-value=80 Score=20.38 Aligned_cols=69 Identities=4% Similarity=0.019 Sum_probs=36.4
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHhCCCchHHHHHHHhcCCCCCCHHHHHHHH
Q 048427 98 LANTQYDGVSGVREHILKMTSYHKKLKEMDVDLPDDYLVFQNLESLPPQFGNLRSQYNTQRDTWNITELTAYV 170 (261)
Q Consensus 98 l~~~~~~~~~~v~~~~~~l~~l~~~L~~~g~~~~d~~~~~~lL~~Lp~~~~~~~~~~~~~~~~~t~~~l~~~l 170 (261)
|+++++...++..+|+++|...... ......+-+.+.-.+++..-.++-..+...+- ...++++.+...
T Consensus 5 ~~~i~QGpkEpf~dfv~rl~k~l~~-e~~~~~vK~~m~~tL~~qNAnp~Ck~il~~l~---~~~~lee~~~aC 73 (86)
T 3ds4_A 5 ILDIRQGPKEPFRDYVDRFYKTLRA-EQASQEVKNWMTETLLVQNANPDCKTILKALG---PGATSEEMMTAC 73 (86)
T ss_dssp GGGCCCCTTSCHHHHHHHHHHHHHH-C-CCHHHHHHHHHHHHHHTSCHHHHHHHHHHC---TTCCHHHHHHHH
T ss_pred hhccccCCCCcHHHHHHHHHHHHHH-hccchhHHHHHHHhHHHHhccHHHHHHHHccC---CCCCHHHHHHHc
Confidence 5678888899999999999876542 11111111222222333333444444433333 334666655544
No 44
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.13 E-value=57 Score=25.30 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=41.9
Q ss_pred CCCChHHHHHhhccccCCCcccHHHHHHHHHHhhccccHHHHHHHHHHHHhcccCCCCCH------HHHHHHHHHHH
Q 048427 50 TDKSTAVEKAETTRDNIPACDKAKDYLAAVGRTFKKIDKAEKGNYLRLLANTQYDGVSGV------REHILKMTSYH 120 (261)
Q Consensus 50 ~~~~~~~~~~~~i~~~i~~~~~a~~lW~~L~~~y~~~~~~~~~~l~~~l~~~~~~~~~~v------~~~~~~l~~l~ 120 (261)
.+|...-+..+.|.. ....|+++..+|+.+....+...++..+.-|-.+-..-+..+ .+|+++|..++
T Consensus 24 ~dw~~ileicD~I~~---~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~ 97 (226)
T 3zyq_A 24 TDWESILQICDLIRQ---GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLL 97 (226)
T ss_dssp CCHHHHHHHHHHHHT---TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhC---CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHh
Confidence 345544444455543 456799999999999998887776665555444433222222 45666666665
No 45
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=34.39 E-value=11 Score=23.19 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=8.1
Q ss_pred Cccceecccc
Q 048427 234 KRKCHFCKKL 243 (261)
Q Consensus 234 ~~~C~~C~~~ 243 (261)
.++||-||+.
T Consensus 4 PVRCFTCGkv 13 (66)
T 4ayb_N 4 PIRCFTCGSL 13 (66)
T ss_dssp CSBCTTTCCB
T ss_pred CcccCCCcHh
Confidence 3689999985
No 46
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=32.61 E-value=18 Score=25.03 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=9.2
Q ss_pred CCCCccceeccc
Q 048427 231 ESFKRKCHFCKK 242 (261)
Q Consensus 231 ~~~~~~C~~C~~ 242 (261)
--..+.|.+||.
T Consensus 17 hv~~V~C~nCgr 28 (119)
T 2xzm_5 17 HTRTVPCTNCGR 28 (119)
T ss_dssp CCCEEECTTTCC
T ss_pred CCccEeeCCccc
Confidence 345678999986
No 47
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=31.25 E-value=1.4e+02 Score=21.17 Aligned_cols=84 Identities=13% Similarity=0.066 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHhCCCchHHHHHHHhcCCC---C
Q 048427 88 KAEKGNYLRLLANTQ----YDGVSGVREHILKMTSYHKKLKEMDVDLPDDYLVFQNLESLPPQFGNLRSQYNTQRD---T 160 (261)
Q Consensus 88 ~~~~~~l~~~l~~~~----~~~~~~v~~~~~~l~~l~~~L~~~g~~~~d~~~~~~lL~~Lp~~~~~~~~~~~~~~~---~ 160 (261)
......+.+.+.+++ +-+-..|.+....+..+.+.++.-..+++ ..++..++.++. ....++..+..... .
T Consensus 41 ~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~-~~l~dlll~~~D-~l~~lv~~~~~~~~~~~~ 118 (144)
T 3kyj_A 41 AAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD-GEIVEILLFASD-TLRAMLEETAASRADVEG 118 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC-HHHHHHHHHHHH-HHHHHHHHHHHHTSCCCG
T ss_pred HHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHH-HHHHHHHHHHcCCCCCCc
Confidence 344556777777776 45556688999999999999998777765 567777777652 23344444443322 3
Q ss_pred CCHHHHHHHHHHH
Q 048427 161 WNITELTAYVVQE 173 (261)
Q Consensus 161 ~t~~~l~~~l~~~ 173 (261)
...++++..|...
T Consensus 119 ~~~~~l~~~l~~~ 131 (144)
T 3kyj_A 119 TGSEALMDQLRSK 131 (144)
T ss_dssp GGGHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 4677788877443
No 48
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=30.34 E-value=21 Score=24.72 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=9.1
Q ss_pred CCCCccceeccc
Q 048427 231 ESFKRKCHFCKK 242 (261)
Q Consensus 231 ~~~~~~C~~C~~ 242 (261)
--..+.|.+||.
T Consensus 17 hv~~V~C~nCgr 28 (119)
T 3u5c_a 17 HVKPVRCVNCSK 28 (119)
T ss_dssp CCCEEECTTTCC
T ss_pred CCccEeeccccc
Confidence 345678999986
No 49
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=29.95 E-value=1e+02 Score=19.27 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=45.7
Q ss_pred cccHHHHHHHHHHhhccccHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHhCCCchH
Q 048427 69 CDKAKDYLAAVGRTFKKIDKAEKGNYLRLLANTQYDGVSGVREHILKMTSYHKKLKEMDVDLPDDYLVFQNLESLPPQFG 148 (261)
Q Consensus 69 ~~~a~~lW~~L~~~y~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~~~l~~l~~~L~~~g~~~~d~~~~~~lL~~Lp~~~~ 148 (261)
...|...-++++.+|... .........-+..++. +..++.+-+.++..|.. +..+++.-|-.=||+.|.
T Consensus 4 ~~dA~~yl~~VK~~F~~~-p~~Y~~FL~im~~~k~-~~~~~~~v~~rv~~Lf~---------~hpdLi~gFn~FLP~~~~ 72 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSD-PATYNGFLEIMKEFKS-QSIDTPGVIRRVSQLFH---------EHPDLIVGFNAFLPLGYR 72 (77)
T ss_dssp HHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHTT---------TCHHHHHHHHTTSCSSSC
T ss_pred HHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHc---------CCHHHHHHHHHHCCCCce
Confidence 356777888999999863 3444444444444443 44568888877776654 356788888888888874
No 50
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=29.35 E-value=9.6 Score=21.28 Aligned_cols=16 Identities=19% Similarity=0.546 Sum_probs=12.5
Q ss_pred CCccceeccccCcccc
Q 048427 233 FKRKCHFCKKLGHKRE 248 (261)
Q Consensus 233 ~~~~C~~C~~~GH~~~ 248 (261)
....|-.||+.||...
T Consensus 5 ~~~~CE~CG~~g~~~~ 20 (43)
T 2w0t_A 5 EPAVCEMCGIVGTREA 20 (43)
T ss_dssp CEEECTTTCCEEETTT
T ss_pred ceehhhhhcCcchhhh
Confidence 3468999999988654
No 51
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=28.59 E-value=16 Score=22.79 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=8.3
Q ss_pred Cccceecccc
Q 048427 234 KRKCHFCKKL 243 (261)
Q Consensus 234 ~~~C~~C~~~ 243 (261)
.++||-||+.
T Consensus 4 PVRCFTCGkv 13 (70)
T 1twf_J 4 PVRCFSCGKV 13 (70)
T ss_dssp CSBCTTTCCB
T ss_pred CeecCCCCCC
Confidence 4689999986
No 52
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.32 E-value=1.1e+02 Score=19.13 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=12.0
Q ss_pred CCCCccceecccc-CcccccC
Q 048427 231 ESFKRKCHFCKKL-GHKRELN 250 (261)
Q Consensus 231 ~~~~~~C~~C~~~-GH~~~~C 250 (261)
.....+|+.|++. |=+.-.|
T Consensus 22 k~~~~RC~~C~kkvgL~~f~C 42 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKC 42 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEEC
T ss_pred cccCccchhhcCcccccceEe
Confidence 3445678888865 4444445
No 53
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics, unknown function; 1.54A {Thermotoga maritima} SCOP: d.58.5.2
Probab=28.10 E-value=16 Score=25.20 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.7
Q ss_pred cccccccCcccccccCCC-ChHHHHHHH
Q 048427 2 VHSYIVTGSLTYCVAIGE-NFEDRRDSI 28 (261)
Q Consensus 2 ~~s~~~~~~~~i~kl~G~-Ny~~Wk~~~ 28 (261)
.|+|-++-++.+|.-+|+ .|..|-..-
T Consensus 74 ~HpYevPeIi~lpi~~g~~~Yl~Wi~~~ 101 (113)
T 1vhf_A 74 LHPYETPAIFTLKVENVLTEYMNWLRES 101 (113)
T ss_dssp HCSSSSCCEEEEECSCCCHHHHHHHHHH
T ss_pred HCCCcCCEEEEEEccCCCHHHHHHHHHH
Confidence 488999999999999997 899997764
No 54
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=27.85 E-value=39 Score=19.81 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=9.0
Q ss_pred CCCCccceecccc
Q 048427 231 ESFKRKCHFCKKL 243 (261)
Q Consensus 231 ~~~~~~C~~C~~~ 243 (261)
.++...|..|+..
T Consensus 10 ~~P~~eC~lC~vk 22 (55)
T 2yrk_A 10 DGTKPECTLCGVK 22 (55)
T ss_dssp CCCCSCCTTTTCC
T ss_pred CCCCccccccCcc
Confidence 3445689999863
No 55
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=27.18 E-value=23 Score=20.51 Aligned_cols=12 Identities=42% Similarity=0.880 Sum_probs=9.4
Q ss_pred ccceeccccCcc
Q 048427 235 RKCHFCKKLGHK 246 (261)
Q Consensus 235 ~~C~~C~~~GH~ 246 (261)
..|.+||++-+-
T Consensus 12 ~~CSFCGk~~~e 23 (51)
T 2ds5_A 12 LYCSFCGKSQHE 23 (51)
T ss_dssp CBCTTTCCBTTT
T ss_pred cEecCCCCCHHH
Confidence 579999997543
No 56
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=26.35 E-value=1.1e+02 Score=20.76 Aligned_cols=37 Identities=5% Similarity=0.104 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhccc--CCCCC
Q 048427 72 AKDYLAAVGRTFKKIDKAEKGNYLRLLANTQY--DGVSG 108 (261)
Q Consensus 72 a~~lW~~L~~~y~~~~~~~~~~l~~~l~~~~~--~~~~~ 108 (261)
-.+||+.|...|...+......|+..++.+-. +.+.+
T Consensus 5 ~q~L~~~lS~AY~DpeVk~~p~Lr~~lf~~Ak~L~~~~d 43 (111)
T 1tdp_A 5 SQTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNS 43 (111)
T ss_dssp HHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhCCHhhhcCHHHHHHHHHHHHHhccCCC
Confidence 46899999999999888777778888777644 55555
No 57
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown function; 1.39A {Xylella fastidiosa}
Probab=26.30 E-value=19 Score=24.97 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=23.9
Q ss_pred cccccccCcccccccCCC-ChHHHHHHH
Q 048427 2 VHSYIVTGSLTYCVAIGE-NFEDRRDSI 28 (261)
Q Consensus 2 ~~s~~~~~~~~i~kl~G~-Ny~~Wk~~~ 28 (261)
.|+|-++-++.+|.-+|+ .|..|-..-
T Consensus 77 ~HpYevPeIi~lpi~~g~~~Yl~Wi~~~ 104 (118)
T 2nuh_A 77 LHPYRLPEAIAVQVSVGLPEYLTWINTE 104 (118)
T ss_dssp HCSSSSCCCEEEECCCCCHHHHHHHHHH
T ss_pred HCCCcCCEEEEEEccCCCHHHHHHHHHH
Confidence 488999999999999997 899998765
No 58
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=25.56 E-value=18 Score=23.93 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=9.2
Q ss_pred CCCccceeccc
Q 048427 232 SFKRKCHFCKK 242 (261)
Q Consensus 232 ~~~~~C~~C~~ 242 (261)
...++||+|+.
T Consensus 53 ~D~V~Cf~C~~ 63 (94)
T 2poi_A 53 GDTVRCFSCHA 63 (94)
T ss_dssp TTCEEETTTCC
T ss_pred CCEEEcccCCC
Confidence 45789999997
No 59
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=24.58 E-value=21 Score=22.08 Aligned_cols=12 Identities=42% Similarity=0.789 Sum_probs=9.4
Q ss_pred CccceeccccCc
Q 048427 234 KRKCHFCKKLGH 245 (261)
Q Consensus 234 ~~~C~~C~~~GH 245 (261)
...|.+||++-.
T Consensus 18 ~~~CSFCGK~e~ 29 (67)
T 1ovx_A 18 LLYCSFCGKSQH 29 (67)
T ss_dssp CCCCTTTCCCTT
T ss_pred CcEecCCCCCHH
Confidence 367999999754
No 60
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=23.74 E-value=1.1e+02 Score=19.85 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=20.6
Q ss_pred hCCCchHHHHHHHhcCCCCCCHHHHHHHHH
Q 048427 142 SLPPQFGNLRSQYNTQRDTWNITELTAYVV 171 (261)
Q Consensus 142 ~Lp~~~~~~~~~~~~~~~~~t~~~l~~~l~ 171 (261)
+||+.+..++......+.-.+..+++..++
T Consensus 9 sL~~~l~~~i~~~V~sG~Y~s~SEviR~~l 38 (88)
T 3kxe_C 9 VLGDHFQAFIDSQVADGRYGSASEVIRAGL 38 (88)
T ss_dssp CCCHHHHHHHHHHHTTTSCSSHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 577778888877776666667777665543
No 61
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=23.65 E-value=21 Score=24.50 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=9.2
Q ss_pred CCCccceeccc
Q 048427 232 SFKRKCHFCKK 242 (261)
Q Consensus 232 ~~~~~C~~C~~ 242 (261)
...++||+|+.
T Consensus 70 ~D~V~Cf~C~~ 80 (111)
T 2qra_D 70 GDTVRCFSCHA 80 (111)
T ss_dssp TTCEEETTTCC
T ss_pred CCEEEcccCCC
Confidence 45689999997
No 62
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.56 E-value=97 Score=18.33 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=13.0
Q ss_pred CCCccceeccccCcccc
Q 048427 232 SFKRKCHFCKKLGHKRE 248 (261)
Q Consensus 232 ~~~~~C~~C~~~GH~~~ 248 (261)
...+.|-.||+.|-+.-
T Consensus 17 pgePvCvvCGryGeYIC 33 (60)
T 2yqp_A 17 PGEPICVVCGRYGEYIC 33 (60)
T ss_dssp TTSCCCSSSSSCCSEEC
T ss_pred CCCceEEEecCccceee
Confidence 34567999999998753
No 63
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=23.38 E-value=21 Score=24.21 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=8.9
Q ss_pred CCCccceeccc
Q 048427 232 SFKRKCHFCKK 242 (261)
Q Consensus 232 ~~~~~C~~C~~ 242 (261)
...++||+|+.
T Consensus 54 ~D~V~Cf~C~~ 64 (106)
T 2vm5_A 54 QDTVQCFSCGG 64 (106)
T ss_dssp TTCEEETTTCC
T ss_pred CCEEEccccCC
Confidence 45689999996
No 64
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=23.29 E-value=22 Score=23.06 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=9.5
Q ss_pred CCCccceecccc
Q 048427 232 SFKRKCHFCKKL 243 (261)
Q Consensus 232 ~~~~~C~~C~~~ 243 (261)
...++|++|+..
T Consensus 44 ~D~v~Cf~C~~~ 55 (85)
T 3m1d_A 44 NDKVKCFCCGLM 55 (85)
T ss_dssp TTCEEETTTCCE
T ss_pred CCEEEeCCcCCE
Confidence 457899999973
No 65
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=22.91 E-value=43 Score=22.66 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHhCCCchHHHHHHHhc-CCCCCCHHHHHHHHH
Q 048427 131 PDDYLVFQNLESLPPQFGNLRSQYNT-QRDTWNITELTAYVV 171 (261)
Q Consensus 131 ~d~~~~~~lL~~Lp~~~~~~~~~~~~-~~~~~t~~~l~~~l~ 171 (261)
|+++.-..++..||+-...++..+.+ ++..++++.++.++.
T Consensus 3 p~qeke~~~~srLPelArilR~vFvaEkK~vl~~e~~~~ki~ 44 (106)
T 3a4c_A 3 PEQELRLQRLERLPELARVLRNVFVSERKPALTMEVVCARMV 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcccCCccHHHHHHHHH
Confidence 46667777888888888777766654 466778888887774
No 66
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.88 E-value=23 Score=20.06 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=9.8
Q ss_pred CCCCccceeccc
Q 048427 231 ESFKRKCHFCKK 242 (261)
Q Consensus 231 ~~~~~~C~~C~~ 242 (261)
.-+.++|.+||-
T Consensus 20 ~lP~IrCpyCGy 31 (48)
T 4ayb_P 20 VLPGVRCPYCGY 31 (48)
T ss_dssp CCSSSCCTTTCC
T ss_pred hCCCcccCccCc
Confidence 557789999985
No 67
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=22.13 E-value=23 Score=24.80 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=9.2
Q ss_pred CCCccceeccc
Q 048427 232 SFKRKCHFCKK 242 (261)
Q Consensus 232 ~~~~~C~~C~~ 242 (261)
...++||+|+.
T Consensus 58 ~D~V~Cf~C~~ 68 (124)
T 1jd5_A 58 GDRVRCFSCGG 68 (124)
T ss_dssp TTCEEETTTCC
T ss_pred CCEEEecCCCC
Confidence 45789999997
No 68
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=21.79 E-value=24 Score=24.61 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=9.1
Q ss_pred CCCccceeccc
Q 048427 232 SFKRKCHFCKK 242 (261)
Q Consensus 232 ~~~~~C~~C~~ 242 (261)
...++||+|+.
T Consensus 58 ~D~V~Cf~C~~ 68 (121)
T 1g73_C 58 GDKVKCFHCGG 68 (121)
T ss_dssp TTCEEETTTCC
T ss_pred CCEEEcCcCCC
Confidence 45689999997
No 69
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=21.70 E-value=1.6e+02 Score=18.56 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=46.3
Q ss_pred cccHHHHHHHHHHhhccccHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHhCCCchH
Q 048427 69 CDKAKDYLAAVGRTFKKIDKAEKGNYLRLLANTQYDGVSGVREHILKMTSYHKKLKEMDVDLPDDYLVFQNLESLPPQFG 148 (261)
Q Consensus 69 ~~~a~~lW~~L~~~y~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~~~l~~l~~~L~~~g~~~~d~~~~~~lL~~Lp~~~~ 148 (261)
...|...-++++.+|... .......+.-+..++ .+.-++.+-+.++..|.. ...+++.-|-.=||+.+.
T Consensus 10 ~~dA~~yl~~VK~rF~~~-p~~Y~~FL~im~~fk-~~~~~~~~v~~rV~~Lf~---------~hpdLi~gFn~FLP~~~~ 78 (80)
T 2cr7_A 10 VEDALTYLDQVKIRFGSD-PATYNGFLEIMKEFK-SQSIDTPGVIRRVSQLFH---------EHPDLIVGFNAFLPSGPS 78 (80)
T ss_dssp SCCSHHHHHHHHHHTSSC-HHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHGG---------GCHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHc---------CCHHHHHHHHHHCcCCCC
Confidence 567888899999999863 333333333444444 344568888888877765 356788888888888763
No 70
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=21.65 E-value=1.1e+02 Score=18.48 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHhCCCc
Q 048427 113 ILKMTSYHKKLKEMDVDLPDDYLVFQNLESLPPQ 146 (261)
Q Consensus 113 ~~~l~~l~~~L~~~g~~~~d~~~~~~lL~~Lp~~ 146 (261)
..-|-.++.+|-..|.+++...++..++..|-..
T Consensus 7 ~e~Lg~iv~eil~~g~~vsnKaIi~~LI~rLE~~ 40 (64)
T 2oxl_A 7 SAVLGQAVTNLMLSGDNVNNKNIILSLIHSLETT 40 (64)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcC
Confidence 3456678888989999999999999999988443
No 71
>1qrj_B HTLV-I capsid protein; retrovirus, two-domain protein, alpha helical protein, heteronuclear spectroscopy; NMR {Human t-cell lymphotrophic virus TYPE1} SCOP: a.28.3.1 a.73.1.1
Probab=21.46 E-value=1.9e+02 Score=21.93 Aligned_cols=84 Identities=8% Similarity=-0.077 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHhCCCchHHHH
Q 048427 72 AKDYLAAVGRTFKKIDKAEKGNYLRLLANTQYDGVSGVREHILKMTSYHKKLKEMDVDLPDDYLVFQNLESLPPQFGNLR 151 (261)
Q Consensus 72 a~~lW~~L~~~y~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~~~l~~l~~~L~~~g~~~~d~~~~~~lL~~Lp~~~~~~~ 151 (261)
+-..|.+|...|.... +.+++....++..+|+++|....+.- ....++-..+.-.+++....++-..+.
T Consensus 102 ~i~a~~ki~~~~~~~s----------~~~IkQGpkEPf~dfVdR~~k~l~ae-~~~~~vK~~~~~tL~~qNANpdCk~il 170 (199)
T 1qrj_B 102 WLAAFAALPGSAKDPS----------WASILQGLEEPYHAFVERLNIALDNG-LPEGTPKDPILRSLAYSNANKECQKLL 170 (199)
T ss_dssp HHHHHHTSSSSCCCCS----------GGGCCBCTTSCHHHHHHHHHHHHHTT-CCTTSCCHHHHHHHHTTTBCHHHHHHH
T ss_pred HHHHHHHHhcccCCCC----------cchhhcCCCCcHHHHHHHHHHHHHhh-cCchhhhhHHHHHHHHHhcCchhHHHH
Confidence 4557777777776655 56788888999999999997654421 122334344443444444444444433
Q ss_pred HHHhcCCCCCCHHHHHH
Q 048427 152 SQYNTQRDTWNITELTA 168 (261)
Q Consensus 152 ~~~~~~~~~~t~~~l~~ 168 (261)
..+. ....++++-+.
T Consensus 171 k~l~--~~~~tlee~~~ 185 (199)
T 1qrj_B 171 QARG--HTNSPLGDMLR 185 (199)
T ss_dssp HHTT--CSSSCHHHHHH
T ss_pred HhcC--CCCCCHHHHHH
Confidence 3332 02336655433
No 72
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=21.06 E-value=26 Score=23.35 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=9.0
Q ss_pred CCCccceeccc
Q 048427 232 SFKRKCHFCKK 242 (261)
Q Consensus 232 ~~~~~C~~C~~ 242 (261)
...++|++|+.
T Consensus 46 ~D~v~Cf~C~~ 56 (97)
T 3d9t_A 46 NDDVKCFCCDG 56 (97)
T ss_dssp TTCEEETTTCC
T ss_pred CCEEEecCcCC
Confidence 35689999996
No 73
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.75 E-value=1.2e+02 Score=18.49 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=10.1
Q ss_pred CCccceecccc-CcccccC
Q 048427 233 FKRKCHFCKKL-GHKRELN 250 (261)
Q Consensus 233 ~~~~C~~C~~~-GH~~~~C 250 (261)
...+|..|++. |=+.-.|
T Consensus 14 ~~~rC~~C~kkvgl~~f~C 32 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC 32 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC
T ss_pred cCCcChhhCCccCccCEEe
Confidence 34567777774 5444445
No 74
>3izc_n 60S ribosomal protein RPL38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_n 3u5e_k 3u5i_k 4b6a_k
Probab=20.63 E-value=64 Score=20.47 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.9
Q ss_pred CCChHHHHHHHHHhCCCch
Q 048427 129 DLPDDYLVFQNLESLPPQF 147 (261)
Q Consensus 129 ~~~d~~~~~~lL~~Lp~~~ 147 (261)
.++|...+..|..||||..
T Consensus 55 vv~D~~KAeKL~qSLPp~l 73 (78)
T 3izc_n 55 VINDAGKAKKLIQSLPPTL 73 (78)
T ss_dssp SSCSHHHHHHHHHSSSCCC
T ss_pred EeCCHHHHHHHHhcCCCCc
Confidence 4789999999999999975
No 75
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=20.58 E-value=26 Score=25.19 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=9.1
Q ss_pred CCCccceeccc
Q 048427 232 SFKRKCHFCKK 242 (261)
Q Consensus 232 ~~~~~C~~C~~ 242 (261)
...++||+|+.
T Consensus 76 ~D~V~Cf~C~~ 86 (141)
T 1i4o_C 76 GDQVQCFCCGG 86 (141)
T ss_pred CCEEEeccCCC
Confidence 45689999996
No 76
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.56 E-value=77 Score=18.94 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=7.7
Q ss_pred CCCccceecccc
Q 048427 232 SFKRKCHFCKKL 243 (261)
Q Consensus 232 ~~~~~C~~C~~~ 243 (261)
.+...|..|++.
T Consensus 16 ~~~~~C~~C~~~ 27 (77)
T 2cot_A 16 RRRYKCDECGKS 27 (77)
T ss_dssp SCSSBCSSSCCB
T ss_pred CCCEECCCCCcc
Confidence 345677777764
No 77
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=20.48 E-value=27 Score=23.15 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=10.1
Q ss_pred CCCCccceecccc
Q 048427 231 ESFKRKCHFCKKL 243 (261)
Q Consensus 231 ~~~~~~C~~C~~~ 243 (261)
....++|++|+..
T Consensus 43 ~~D~v~Cf~C~~~ 55 (95)
T 3hl5_A 43 EGDKVKCFHCGGG 55 (95)
T ss_dssp STTCEEETTTCCE
T ss_pred CCCeEEecCCCCC
Confidence 3467899999974
No 78
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=20.33 E-value=27 Score=24.40 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.0
Q ss_pred CCCCccceecccc
Q 048427 231 ESFKRKCHFCKKL 243 (261)
Q Consensus 231 ~~~~~~C~~C~~~ 243 (261)
....++||+|+..
T Consensus 51 ~~D~V~Cf~C~~~ 63 (122)
T 3mup_A 51 RNDDVKCFCCDGG 63 (122)
T ss_dssp STTCEEETTTCCE
T ss_pred CCCeEEecCcCCE
Confidence 3457899999973
No 79
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=20.28 E-value=1.8e+02 Score=18.58 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=41.7
Q ss_pred cccHHHHHHHHHHhhccccHHHHH---HHHHHHHhcccCC------CCCHHHHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q 048427 69 CDKAKDYLAAVGRTFKKIDKAEKG---NYLRLLANTQYDG------VSGVREHILKMTSYHKKLKEMDVDLPDDYLVFQN 139 (261)
Q Consensus 69 ~~~a~~lW~~L~~~y~~~~~~~~~---~l~~~l~~~~~~~------~~~v~~~~~~l~~l~~~L~~~g~~~~d~~~~~~l 139 (261)
...|...-++++.+|... ..... .+++.+..-+.+. +.++.+-+.++..|.. ...+++.-|
T Consensus 7 ~~~A~~yv~kVK~rF~~~-p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~---------~hpDLl~~F 76 (85)
T 1e91_A 7 FNNAISYVNKIKTRFLDH-PEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFR---------GQEDLLSEF 76 (85)
T ss_dssp HHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTS---------SCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHc---------cCHHHHHHH
Confidence 356777888999999884 33322 2333333322211 2457777777766654 366777777
Q ss_pred HHhCCCch
Q 048427 140 LESLPPQF 147 (261)
Q Consensus 140 L~~Lp~~~ 147 (261)
-.=||+.|
T Consensus 77 ~~FLP~~~ 84 (85)
T 1e91_A 77 GQFLPEAK 84 (85)
T ss_dssp HHHSCCCC
T ss_pred HHHCcCcc
Confidence 77788776
Done!