BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048429
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 197 bits (500), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 139/203 (68%), Gaps = 22/203 (10%)
Query: 11 EALKQKIKNMLISPTDKSFQKLSLIDAVQRLGYD---------------------GNDVH 49
+ LK++++ M+++P S QKL+ ID+VQRLG ND++
Sbjct: 53 QQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLY 112
Query: 50 TVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILD 109
T ++RFRLLR+ GY +SCD+F FKD++G FK S+ +D+ G+L LY+A++LR+ GEDILD
Sbjct: 113 TTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILD 172
Query: 110 EAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAIL 169
EA++FTT HL V + LS+E+ HAL + IRRGLPR+EA +Y+ +Y +S +KA L
Sbjct: 173 EAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKA-L 231
Query: 170 LKFAKLDFSMLQVIHRKELSIIT 192
L+FAK+DF+MLQ +HRKELS I
Sbjct: 232 LEFAKIDFNMLQFLHRKELSEIC 254
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 166 bits (420), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9 EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
E EALK++ +NML++ K L+LID ++RLG + ND+
Sbjct: 45 EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 104
Query: 49 HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
T AL+FRLLRQ G+ IS +IF F+D+ GKFK SL +D+ G+L+LYEA+H+R +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
++A+AF+T HLES + L +++ HAL + + +G+PR+E ++I +Y ++ SK+
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
+LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 166 bits (419), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9 EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
E EALK++ +NML++ K L+LID ++RLG + ND+
Sbjct: 45 EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 104
Query: 49 HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
T AL+FRLLRQ G+ IS +IF F+D+ GKFK SL +D+ G+L+LYEA+H+R +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
++A+AF+T HLES + L +++ HAL + + +G+PR+E ++I +Y ++ SK+
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
+LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 166 bits (419), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9 EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
E EALK++ +NML++ K L+LID ++RLG + ND+
Sbjct: 45 EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 104
Query: 49 HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
T AL+FRLLRQ G+ IS +IF F+D+ GKFK SL +D+ G+L+LYEA+H+R +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
++A+AF+T HLES + L +++ HAL + + +G+PR+E ++I +Y ++ SK+
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
+LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 166 bits (419), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9 EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
E EALK++ +NML++ K L+LID ++RLG + ND+
Sbjct: 45 EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 104
Query: 49 HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
T AL+FRLLRQ G+ IS +IF F+D+ GKFK SL +D+ G+L+LYEA+H+R +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
++A+AF+T HLES + L +++ HAL + + +G+PR+E ++I +Y ++ SK+
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
+LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 166 bits (419), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9 EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
E EALK++ +NML++ K L+LID ++RLG + ND+
Sbjct: 47 EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 106
Query: 49 HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
T AL+FRLLRQ G+ IS +IF F+D+ GKFK SL +D+ G+L+LYEA+H+R +DIL
Sbjct: 107 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 166
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
++A+AF+T HLES + L +++ HAL + + +G+PR+E ++I +Y ++ SK+
Sbjct: 167 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 225
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
+LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 226 VLLRFAKLDFNLLQMLHKQELAQVS 250
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 166 bits (419), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9 EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
E EALK++ +NML++ K L+LID ++RLG + ND+
Sbjct: 47 EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 106
Query: 49 HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
T AL+FRLLRQ G+ IS +IF F+D+ GKFK SL +D+ G+L+LYEA+H+R +DIL
Sbjct: 107 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 166
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
++A+AF+T HLES + L +++ HAL + + +G+PR+E ++I +Y ++ SK+
Sbjct: 167 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 225
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
+LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 226 VLLRFAKLDFNLLQMLHKQELAQVS 250
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9 EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
E EALK++ +NML++ K L+LID ++RLG + ND+
Sbjct: 32 EIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDL 91
Query: 49 HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
T AL+FRLLRQ G+ IS +IF F+D+ GKFK SL +D+ G+L+LYEA+H+R +DIL
Sbjct: 92 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 151
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
++A+AF+T HLES + L +++ HAL + + +G+PR+E ++I +Y ++ SK+
Sbjct: 152 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 210
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
+LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 211 VLLRFAKLDFNLLQMLHKQELAQVS 235
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9 EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
E EALK++ ++ML++ K L+LID ++RLG + ND+
Sbjct: 45 EIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDL 104
Query: 49 HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
T AL+FRLLRQ G+ IS +IF F+D+ GKFK SL +D+ G+L+LYEA+H+R +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
++A+AF+T HLES + L +++ HAL + + +G+PR+E ++I +Y ++ SK+
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
+LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 137/205 (66%), Gaps = 22/205 (10%)
Query: 9 EFEALKQKIKNMLISPTDKSFQKLSLIDAVQRLGY--------------------DGNDV 48
E EALK++ ++ML++ K L+LID ++RLG + ND+
Sbjct: 45 EIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDL 104
Query: 49 HTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDIL 108
T AL+FRLLRQ G+ IS +IF F+D+ GKFK SL +D+ G+L+LYEA+H+R +DIL
Sbjct: 105 CTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDIL 164
Query: 109 DEAVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYID-LYSQDDSKDKA 167
++A+AF+T HLES + L +++ HAL + + +G+PR+E ++I +Y ++ SK+
Sbjct: 165 EDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNN- 223
Query: 168 ILLKFAKLDFSMLQVIHRKELSIIT 192
+LL+FAKLDF++LQ++H++EL+ ++
Sbjct: 224 VLLRFAKLDFNLLQMLHKQELAQVS 248
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 106/182 (58%), Gaps = 26/182 (14%)
Query: 32 LSLIDAVQRLG---------------------YDG---NDVHTVALRFRLLRQQGYRISC 67
L LID VQRLG +DG +H AL FRLLRQ G+ +S
Sbjct: 68 LELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ 127
Query: 68 DIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTSHLESMVTQ-V 126
+ F GFKD G F +L D +LSLYEA+ L + GE+ILDEA F SHL+ + + +
Sbjct: 128 EAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKI 187
Query: 127 SPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLKFAKLDFSMLQVIHRK 186
+L++++ HAL P+ R RLEA++ I+ Y + + ++ +LL+ A LD++M+Q ++++
Sbjct: 188 GKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQ-VLLELAILDYNMIQSVYQR 246
Query: 187 EL 188
+L
Sbjct: 247 DL 248
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 91/147 (61%), Gaps = 6/147 (4%)
Query: 47 DVHTVALRFRLLRQQGYRISCDIFGGFKDDRG-KFKVSLINDLTGMLSLYEAAHLRIRGE 105
D++ AL FRLLRQ G+ IS D+F FK+++G FK SL D GML LYEA+ L +GE
Sbjct: 100 DLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGE 159
Query: 106 DILDEAVAFTTSHLESMVTQVSPQLSDEIL----HALNRPIRRGLPRLEAIYYIDLYSQD 161
D L+ A F T L+ + + ++ + +L H+L+ P+ + +EA ++ID Y++
Sbjct: 160 DTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARR 219
Query: 162 DSKDKAILLKFAKLDFSMLQVIHRKEL 188
+ ++ + AKL+F+++Q H++EL
Sbjct: 220 PDMN-PLIFELAKLNFNIIQATHQQEL 245
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 22/168 (13%)
Query: 47 DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVS---LINDLTGMLSLYEAAHLRIR 103
D+ T AL FRLLR Y +S IF FKD GKF S D+ ML+LY A+ L
Sbjct: 347 DLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFP 406
Query: 104 GEDILDEAVAFTTSHLE--------SMVTQVSPQLSDEILHALNRPIRRGLPRLEAIYYI 155
GE+ILDEA +F T +L S LS EI +AL +PR+EA Y
Sbjct: 407 GENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYC 466
Query: 156 DLYSQDDSK-----------DKAILLKFAKLDFSMLQVIHRKELSIIT 192
+Y D ++ + L+ KLDF+++Q IH++E+ +T
Sbjct: 467 QVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVT 514
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 85/144 (59%), Gaps = 3/144 (2%)
Query: 47 DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGED 106
D+++ +L FRLLR+ G++++ ++F FK++ G+FK SL +D G+L LYEA+ L GE
Sbjct: 97 DLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGET 156
Query: 107 ILDEAVAFTTSHLESMVTQ--VSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSK 164
L+ A F T LE V + V L I ++L+ P+ + R A +I+ Y +
Sbjct: 157 TLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDM 216
Query: 165 DKAILLKFAKLDFSMLQVIHRKEL 188
+ ++L+ A LD +++Q ++EL
Sbjct: 217 N-PVVLELAILDLNIVQAQFQEEL 239
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 100/197 (50%), Gaps = 26/197 (13%)
Query: 16 KIKNMLISPTDKSFQKLSLIDAVQRLG-----------------YDGN-----DVHTVAL 53
++K ML D S ++L LID ++RLG Y N D+++ AL
Sbjct: 72 QVKMMLQEEVD-SIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTAL 130
Query: 54 RFRLLRQQGYRISCDIFGGFKDDRGK-FKVSLINDLTGMLSLYEAAHLRIRGEDILDEAV 112
RFRLLRQ + +S ++F FK+ +G FK SL++D G+L LYEA+ L +GE+ L A
Sbjct: 131 RFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLAR 190
Query: 113 AFTTSHLESMV-TQVSPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDDSKDKAILLK 171
F T L+ V L I AL P + A +ID Y + + + L+
Sbjct: 191 DFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTV-LE 249
Query: 172 FAKLDFSMLQVIHRKEL 188
AKLDF+M+Q ++EL
Sbjct: 250 LAKLDFNMVQAQFQQEL 266
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 17/163 (10%)
Query: 47 DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLIN---DLTGMLSLYEAAHLRIR 103
D++T AL R LR GY +S D+ FKD+ G+F S +L +++L+ A+ L
Sbjct: 295 DLNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFP 354
Query: 104 GEDILDEAVAFTTSHL-ESMVTQVS--PQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQ 160
E +D+A F +L E++ T++S +L EI + + P +PRLEA YID Y
Sbjct: 355 DERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDD 414
Query: 161 D-----------DSKDKAILLKFAKLDFSMLQVIHRKELSIIT 192
+ S + L+ AKLDF+++Q +H++EL ++T
Sbjct: 415 NYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLT 457
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 56/214 (26%)
Query: 29 FQKLSLIDAVQRLGYDGN------------------------------DVHTVALRFRLL 58
F++L +D V+RLG D + D+ A+ R+L
Sbjct: 271 FERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRIL 330
Query: 59 RQQGYRISCDIFGGFKDDRGKFKVSLIN---DLTGMLSLYEAAHLRIRGEDILDEAVAFT 115
R GY +S D+ F+D+ G+F L +T ML++ +H+ GE I++EA T
Sbjct: 331 RLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCT 390
Query: 116 TSHLESMVTQV--------SPQLSDEILHALNRPIRRGLPRLEAIYYIDLYSQDD----- 162
+L + + V + E+ +AL P + +PRLEA YI+ Y DD
Sbjct: 391 ERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGK 450
Query: 163 --------SKDKAILLKFAKLDFSMLQVIHRKEL 188
S +K L+ AKLDF+ +Q IH+ EL
Sbjct: 451 TVYMMPYISNEK--YLELAKLDFNKVQSIHQTEL 482
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 24/168 (14%)
Query: 47 DVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLIND---LTGMLSLYEAAHLRIR 103
D+ A+ FRLLRQ GY++S D+F F+ + G+F + +TGM +LY A+ L
Sbjct: 294 DIDDTAMAFRLLRQHGYQVSADVFKNFEKE-GEFFCFVGQSNQAVTGMFNLYRASQLAFP 352
Query: 104 GEDILDEAVAFTTSHL------ESMVTQ--VSPQLSDEILHALNRPIRRGLPRLEAIYYI 155
E+IL A F+ ++L E ++ + + L EI AL P LPR+E +YI
Sbjct: 353 REEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYI 412
Query: 156 DLYSQDDS------------KDKAILLKFAKLDFSMLQVIHRKELSII 191
D Y ++ + L+ AK D++ Q H+ E I
Sbjct: 413 DQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIF 460
>pdb|1K8I|A Chain A, Crystal Structure Of Mouse H2-Dm
Length = 191
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 111 AVAFTTSHLESMVTQVSPQLSDEILHALNRPIRRGLPRLE 150
A+AF S E ++ +VSP+L +I P+ RGLP E
Sbjct: 68 AIAFDKSFCEMLMREVSPKLEGQI------PVSRGLPVAE 101
>pdb|1VHQ|A Chain A, Crystal Structure Of Enhancing Lycopene Biosynthesis
Protein 2
pdb|1VHQ|B Chain B, Crystal Structure Of Enhancing Lycopene Biosynthesis
Protein 2
Length = 232
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 43 YDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLS------LYE 96
YDG+++H L + + G + C F D K +V +IN LTG L E
Sbjct: 19 YDGSEIHEAVLTLLAISRSGAQAVC-----FAPD--KQQVDVINHLTGEAXTETRNVLIE 71
Query: 97 AAHLRIRGE 105
AA + RGE
Sbjct: 72 AARIT-RGE 79
>pdb|1OY1|A Chain A, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
pdb|1OY1|B Chain B, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
pdb|1OY1|C Chain C, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
pdb|1OY1|D Chain D, X-Ray Structure Of Elbb From E. Coli. Northeast Structural
Genomics Research Consortium (Nesg) Target Er105
Length = 228
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 43 YDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLS------LYE 96
YDG+++H L + + G + C F D K +V +IN LTG L E
Sbjct: 17 YDGSEIHEAVLTLLAISRSGAQAVC-----FAPD--KQQVDVINHLTGEAXTETRNVLIE 69
Query: 97 AAHLRIRGE 105
AA + RGE
Sbjct: 70 AARIT-RGE 77
>pdb|1VBG|A Chain A, Pyruvate Phosphate Dikinase From Maize
pdb|1VBH|A Chain A, Pyruvate Phosphate Dikinase With Bound Mg-Pep From Maize
Length = 876
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 58 LRQQGYRISCDIFGGFKDDRGKFKVSLINDLTGMLSLYEAAHLRIRGEDILDEAVAFTTS 117
LR + C +FG + G + N TG LY + +GED++ A T
Sbjct: 235 LRGTAVNVQCMVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVV--AGIRTPE 292
Query: 118 HLESMVTQVSPQLSDEILHALN 139
L++M + PQ DE++ N
Sbjct: 293 DLDAM-KNLMPQAYDELVENCN 313
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 36 DAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDD 76
D V R + ++ H AL++ LL GY ++ D GF+ D
Sbjct: 55 DWVDRDRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQD 95
>pdb|3T8Q|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME Family Protein From Hoeflea
Phototrophica
pdb|3T8Q|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME Family Protein From Hoeflea
Phototrophica
Length = 370
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 105 EDILDEAVAF---TTSHLESMVTQVSPQLSD---EILHALNRPIRRGLPRLEAIYYIDLY 158
E +E V F TT E+ QV+P +D ++LH P G P L+ Y +D+
Sbjct: 9 ETFANEFVCFVKVTTDSGETGWGQVAPYYADITAQVLHRQVAPYALGKPALDIDYLVDII 68
Query: 159 SQDDSKDKAILLKFA--KLDFSMLQVIHRKE 187
+ + K L+ A LD ++ + R E
Sbjct: 69 PEKEHKFPGSYLRRALGGLDTALWDLRGRLE 99
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 22 ISPTDKSFQKLSLIDAVQRLGYDGNDVHTVALRFRLLRQQGYRISCDIFGGFKDDRGKFK 81
IS +SF + +A+QR+G +G V TV +G ++ G + DRG
Sbjct: 150 ISANGESFIGQQIAEAMQRVGNEG--VITVE------ENKGMETEVEVVEGMQFDRGYLS 201
Query: 82 VSLINDLTGMLSLYEAAHL 100
+ + M++ E A++
Sbjct: 202 PYFVTNADKMIAELEDAYI 220
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,142,786
Number of Sequences: 62578
Number of extensions: 205680
Number of successful extensions: 623
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 573
Number of HSP's gapped (non-prelim): 36
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)