Query 048431
Match_columns 396
No_of_seqs 183 out of 1684
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 4.4E-78 9.6E-83 585.3 46.6 372 23-396 20-392 (394)
2 PLN02793 Probable polygalactur 100.0 2.7E-76 5.9E-81 581.6 49.1 367 28-396 50-423 (443)
3 PLN02218 polygalacturonase ADP 100.0 7.1E-75 1.5E-79 568.9 46.3 366 23-396 60-431 (431)
4 PLN02188 polygalacturonase/gly 100.0 2.1E-74 4.5E-79 562.1 44.2 366 27-396 33-404 (404)
5 PLN03003 Probable polygalactur 100.0 2.9E-74 6.4E-79 562.3 42.2 365 23-396 16-389 (456)
6 PLN03010 polygalacturonase 100.0 2E-73 4.3E-78 553.7 46.9 355 27-396 43-403 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.4E-57 3.1E-62 437.6 32.1 322 58-385 1-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 9.2E-42 2E-46 338.0 27.8 274 25-310 77-404 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 1E-25 2.2E-30 216.9 23.0 247 28-304 35-338 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 1.2E-20 2.6E-25 172.2 20.3 60 30-95 1-61 (225)
11 PLN02793 Probable polygalactur 99.9 3.8E-19 8.3E-24 176.1 28.1 217 88-343 144-397 (443)
12 PLN02188 polygalacturonase/gly 99.8 1.2E-18 2.5E-23 170.8 29.0 220 88-343 123-377 (404)
13 PLN02218 polygalacturonase ADP 99.8 2.4E-18 5.2E-23 169.7 26.7 217 88-342 157-410 (431)
14 PLN03003 Probable polygalactur 99.8 5.7E-18 1.2E-22 166.6 28.8 205 151-380 105-342 (456)
15 PLN03010 polygalacturonase 99.8 9E-18 1.9E-22 164.2 29.9 205 151-380 131-359 (409)
16 PF03718 Glyco_hydro_49: Glyco 99.8 5E-18 1.1E-22 165.3 26.4 276 62-371 231-554 (582)
17 PLN02155 polygalacturonase 99.8 7.3E-18 1.6E-22 164.5 27.7 198 111-344 146-367 (394)
18 PF00295 Glyco_hydro_28: Glyco 99.8 3E-18 6.6E-23 165.0 23.4 217 88-342 61-310 (326)
19 TIGR03805 beta_helix_1 paralle 99.7 9E-15 2E-19 139.8 27.6 190 50-274 1-203 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 1E-11 2.2E-16 124.4 15.2 154 172-343 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 99.3 1.8E-10 3.8E-15 110.4 18.3 163 118-304 31-203 (314)
22 PRK10123 wcaM putative colanic 99.1 3E-08 6.5E-13 90.2 19.6 233 20-301 24-282 (464)
23 PF12541 DUF3737: Protein of u 98.8 6.7E-08 1.5E-12 87.2 13.4 124 155-307 94-228 (277)
24 PF12541 DUF3737: Protein of u 98.8 9.9E-08 2.1E-12 86.1 13.6 138 115-280 94-231 (277)
25 PF13229 Beta_helix: Right han 98.6 2.9E-07 6.3E-12 78.6 11.2 139 152-310 2-144 (158)
26 TIGR03808 RR_plus_rpt_1 twin-a 98.6 1.8E-06 3.9E-11 84.4 16.5 141 152-306 108-285 (455)
27 PF05048 NosD: Periplasmic cop 98.6 3.4E-06 7.5E-11 77.7 16.9 127 152-296 37-165 (236)
28 PF07602 DUF1565: Protein of u 98.6 8.7E-06 1.9E-10 74.5 18.6 106 48-193 16-133 (246)
29 PLN02480 Probable pectinestera 98.5 3.5E-05 7.5E-10 74.2 22.5 198 45-304 58-277 (343)
30 PF14592 Chondroitinas_B: Chon 98.5 1.4E-05 3E-10 78.2 19.8 32 46-80 3-34 (425)
31 COG3866 PelB Pectate lyase [Ca 98.5 6.6E-06 1.4E-10 75.7 16.1 102 173-274 116-229 (345)
32 COG3866 PelB Pectate lyase [Ca 98.5 7.7E-06 1.7E-10 75.3 16.2 172 89-299 77-276 (345)
33 PF03718 Glyco_hydro_49: Glyco 98.4 6.5E-06 1.4E-10 81.5 15.2 172 176-369 323-513 (582)
34 PF13229 Beta_helix: Right han 98.4 2.7E-06 5.9E-11 72.4 11.0 139 114-282 4-146 (158)
35 smart00656 Amb_all Amb_all dom 98.4 1.3E-05 2.8E-10 71.2 15.6 100 174-274 32-144 (190)
36 COG3420 NosD Nitrous oxidase a 98.4 6.8E-05 1.5E-09 70.2 20.4 155 61-242 32-191 (408)
37 PF05048 NosD: Periplasmic cop 98.3 1.7E-05 3.8E-10 73.0 15.3 135 151-309 14-150 (236)
38 PLN02176 putative pectinestera 98.3 0.00033 7.2E-09 67.3 23.8 197 46-304 50-271 (340)
39 PLN02665 pectinesterase family 98.1 0.00087 1.9E-08 65.0 22.4 204 46-304 79-298 (366)
40 PLN02634 probable pectinestera 98.1 0.0013 2.7E-08 63.6 23.0 207 46-304 67-291 (359)
41 PLN02682 pectinesterase family 98.1 0.00058 1.3E-08 66.2 20.6 208 45-304 80-305 (369)
42 PLN02773 pectinesterase 98.1 0.00092 2E-08 63.7 21.4 212 46-304 16-240 (317)
43 PRK10531 acyl-CoA thioesterase 98.0 0.0012 2.7E-08 64.8 21.5 115 153-274 200-336 (422)
44 PF00544 Pec_lyase_C: Pectate 98.0 6E-05 1.3E-09 67.6 11.2 100 174-274 37-158 (200)
45 PLN02497 probable pectinestera 98.0 0.002 4.3E-08 61.7 22.0 200 46-304 43-264 (331)
46 PLN02708 Probable pectinestera 97.9 0.0016 3.6E-08 66.8 21.2 47 46-95 252-300 (553)
47 PLN02170 probable pectinestera 97.9 0.002 4.3E-08 65.3 21.2 202 46-304 236-452 (529)
48 smart00656 Amb_all Amb_all dom 97.9 0.00065 1.4E-08 60.4 15.4 134 152-298 33-188 (190)
49 PF12708 Pectate_lyase_3: Pect 97.9 0.001 2.2E-08 60.2 16.5 122 162-308 95-224 (225)
50 PLN02713 Probable pectinestera 97.8 0.0012 2.7E-08 67.8 18.5 207 46-304 261-489 (566)
51 PLN02916 pectinesterase family 97.8 0.0022 4.8E-08 64.6 18.9 207 46-304 198-426 (502)
52 PF01095 Pectinesterase: Pecti 97.8 0.00058 1.3E-08 64.9 14.1 204 45-304 10-236 (298)
53 PLN02933 Probable pectinestera 97.8 0.0038 8.1E-08 63.5 20.2 207 46-304 229-454 (530)
54 PLN03043 Probable pectinestera 97.7 0.0034 7.4E-08 64.3 19.4 207 46-304 234-462 (538)
55 PLN02468 putative pectinestera 97.7 0.0033 7.3E-08 64.7 19.4 207 46-304 269-490 (565)
56 PLN02484 probable pectinestera 97.7 0.0068 1.5E-07 62.8 20.7 208 46-304 283-509 (587)
57 PLN02304 probable pectinestera 97.7 0.013 2.8E-07 57.0 21.3 199 46-303 86-311 (379)
58 PLN02506 putative pectinestera 97.7 0.0036 7.8E-08 64.0 18.3 201 46-303 243-458 (537)
59 PLN02990 Probable pectinestera 97.6 0.0089 1.9E-07 61.7 20.5 210 46-304 270-496 (572)
60 PLN02745 Putative pectinestera 97.6 0.0094 2E-07 61.8 20.6 206 46-304 296-521 (596)
61 PLN02201 probable pectinestera 97.6 0.012 2.6E-07 59.9 20.8 207 46-304 217-442 (520)
62 PLN02217 probable pectinestera 97.6 0.0094 2E-07 62.3 20.2 209 46-304 261-486 (670)
63 PLN02432 putative pectinestera 97.6 0.014 3E-07 55.2 19.5 199 46-303 22-229 (293)
64 PLN02995 Probable pectinestera 97.6 0.011 2.5E-07 60.5 20.4 209 46-304 234-461 (539)
65 PLN02671 pectinesterase 97.6 0.021 4.5E-07 55.4 20.9 208 46-304 70-295 (359)
66 PLN02416 probable pectinestera 97.5 0.0084 1.8E-07 61.5 18.9 208 46-303 241-465 (541)
67 PLN02488 probable pectinestera 97.5 0.014 3.1E-07 58.7 20.0 206 45-303 207-432 (509)
68 PLN02301 pectinesterase/pectin 97.5 0.014 2.9E-07 60.0 20.2 207 46-304 247-472 (548)
69 PLN02313 Pectinesterase/pectin 97.5 0.012 2.6E-07 61.0 19.8 178 46-275 286-478 (587)
70 PF01696 Adeno_E1B_55K: Adenov 97.5 0.076 1.6E-06 51.7 23.5 170 31-245 44-221 (386)
71 PLN02197 pectinesterase 97.4 0.019 4.1E-07 59.3 19.8 210 46-304 286-514 (588)
72 PLN02314 pectinesterase 97.4 0.018 3.9E-07 59.8 19.6 206 46-304 289-509 (586)
73 PF00544 Pec_lyase_C: Pectate 97.1 0.0096 2.1E-07 53.3 12.0 118 156-281 43-188 (200)
74 COG3420 NosD Nitrous oxidase a 96.9 0.013 2.9E-07 55.2 11.6 112 113-241 123-234 (408)
75 PF12218 End_N_terminal: N ter 96.8 0.003 6.5E-08 44.0 4.6 43 38-83 1-43 (67)
76 COG4677 PemB Pectin methyleste 96.6 0.28 6.1E-06 46.3 17.7 139 158-303 188-350 (405)
77 PF03211 Pectate_lyase: Pectat 95.6 0.41 9E-06 43.0 13.4 54 183-242 62-116 (215)
78 PLN02773 pectinesterase 95.5 0.35 7.5E-06 46.4 13.2 115 178-305 98-213 (317)
79 PF01696 Adeno_E1B_55K: Adenov 94.3 1.1 2.5E-05 43.7 13.4 119 155-296 117-237 (386)
80 PLN02480 Probable pectinestera 94.2 1.7 3.8E-05 42.1 14.6 111 180-304 130-252 (343)
81 PF14592 Chondroitinas_B: Chon 94.2 1.8 3.8E-05 43.0 14.6 26 329-354 274-299 (425)
82 TIGR03804 para_beta_helix para 93.7 0.11 2.4E-06 34.0 3.9 38 202-240 1-38 (44)
83 PF03211 Pectate_lyase: Pectat 93.6 5.3 0.00012 36.0 16.3 133 158-298 60-194 (215)
84 PLN02170 probable pectinestera 92.6 2.2 4.8E-05 43.7 12.9 115 178-305 309-428 (529)
85 PF01095 Pectinesterase: Pecti 92.6 1.1 2.3E-05 42.8 10.2 113 180-305 85-203 (298)
86 TIGR03804 para_beta_helix para 92.5 0.21 4.7E-06 32.7 3.8 41 175-220 1-41 (44)
87 PLN02665 pectinesterase family 92.5 3.3 7.2E-05 40.5 13.4 116 178-305 150-273 (366)
88 PLN02217 probable pectinestera 92.2 2.8 6.1E-05 44.2 13.4 113 180-305 335-453 (670)
89 PLN02698 Probable pectinestera 91.9 3.8 8.2E-05 41.9 13.6 76 157-241 268-348 (497)
90 PLN02745 Putative pectinestera 91.5 5.9 0.00013 41.5 14.7 113 180-305 370-488 (596)
91 PLN02201 probable pectinestera 91.5 4.2 9.1E-05 41.8 13.4 113 179-304 290-408 (520)
92 PLN02468 putative pectinestera 91.1 3 6.6E-05 43.3 12.1 113 180-305 343-461 (565)
93 PLN02301 pectinesterase/pectin 91.0 3.4 7.4E-05 42.7 12.3 115 179-305 320-439 (548)
94 PRK10531 acyl-CoA thioesterase 90.9 4.6 9.9E-05 40.2 12.6 117 178-305 202-337 (422)
95 PLN02176 putative pectinestera 90.8 4.8 0.0001 39.0 12.4 111 180-304 120-246 (340)
96 PF07602 DUF1565: Protein of u 90.8 10 0.00023 35.0 14.1 136 174-342 89-226 (246)
97 PLN02304 probable pectinestera 90.5 6 0.00013 38.9 12.9 113 180-304 160-287 (379)
98 PLN02995 Probable pectinestera 90.4 3.7 8E-05 42.4 12.0 113 180-305 310-428 (539)
99 PF09251 PhageP22-tail: Salmon 90.3 14 0.00031 36.4 14.9 70 231-303 263-349 (549)
100 PLN02314 pectinesterase 90.3 4.6 0.0001 42.2 12.7 112 180-305 363-481 (586)
101 PLN02634 probable pectinestera 90.3 5.2 0.00011 39.0 12.2 111 180-304 147-266 (359)
102 PLN02671 pectinesterase 90.1 6 0.00013 38.6 12.5 112 180-304 152-270 (359)
103 PRK10123 wcaM putative colanic 90.1 1.5 3.2E-05 40.8 7.8 72 225-304 295-374 (464)
104 PLN02497 probable pectinestera 90.0 3.8 8.1E-05 39.6 10.9 114 179-304 112-239 (331)
105 PLN02197 pectinesterase 89.4 5.7 0.00012 41.4 12.4 114 179-305 361-481 (588)
106 PLN02698 Probable pectinestera 86.7 21 0.00047 36.5 14.5 114 179-305 267-386 (497)
107 PLN02916 pectinesterase family 85.4 34 0.00075 35.0 15.0 114 179-305 274-393 (502)
108 PF09251 PhageP22-tail: Salmon 84.4 16 0.00035 36.1 11.5 80 209-304 264-367 (549)
109 PLN02506 putative pectinestera 84.2 27 0.00059 36.2 13.9 114 178-304 315-434 (537)
110 PLN02713 Probable pectinestera 83.8 29 0.00063 36.2 14.0 115 179-305 337-456 (566)
111 PF08480 Disaggr_assoc: Disagg 83.4 31 0.00066 30.3 12.0 92 208-304 33-143 (198)
112 PF08480 Disaggr_assoc: Disagg 82.7 10 0.00023 33.1 8.6 63 210-276 3-78 (198)
113 PLN02933 Probable pectinestera 82.3 43 0.00093 34.6 14.3 113 179-304 302-420 (530)
114 PLN02682 pectinesterase family 82.0 39 0.00085 33.2 13.4 113 179-304 160-280 (369)
115 PLN02416 probable pectinestera 82.0 34 0.00073 35.5 13.6 114 179-305 314-433 (541)
116 PLN03043 Probable pectinestera 81.1 53 0.0012 34.1 14.7 115 179-305 310-429 (538)
117 PLN02488 probable pectinestera 80.5 63 0.0014 33.2 14.6 113 180-305 282-400 (509)
118 PLN02484 probable pectinestera 80.4 49 0.0011 34.7 14.2 114 179-305 357-476 (587)
119 PLN02708 Probable pectinestera 80.0 48 0.001 34.5 14.0 80 154-242 325-409 (553)
120 PLN02432 putative pectinestera 80.0 44 0.00096 31.7 12.7 112 179-304 91-205 (293)
121 PLN02313 Pectinesterase/pectin 78.1 64 0.0014 33.9 14.3 114 179-305 359-478 (587)
122 PRK09810 entericidin A; Provis 74.9 2.4 5.1E-05 27.4 1.8 24 1-24 1-24 (41)
123 KOG1777 Putative Zn-finger pro 70.5 90 0.002 31.2 12.1 29 61-94 46-74 (625)
124 PLN02990 Probable pectinestera 69.8 88 0.0019 32.8 12.9 113 180-305 345-463 (572)
125 COG4531 ZnuA ABC-type Zn2+ tra 68.3 8.6 0.00019 35.7 4.6 55 8-76 8-66 (318)
126 PRK02710 plastocyanin; Provisi 59.2 11 0.00024 30.6 3.3 33 1-33 1-33 (119)
127 COG4677 PemB Pectin methyleste 55.6 56 0.0012 31.4 7.5 113 181-305 188-320 (405)
128 smart00710 PbH1 Parallel beta- 52.0 15 0.00032 19.9 2.1 19 263-281 3-22 (26)
129 PF10162 G8: G8 domain; Inter 40.5 96 0.0021 25.2 6.1 54 62-129 11-65 (125)
130 smart00722 CASH Domain present 38.4 2.1E+02 0.0045 22.9 11.0 68 156-226 73-144 (146)
131 PF11466 Doppel: Prion-like pr 35.6 23 0.00049 21.0 1.1 22 1-22 1-22 (30)
132 PRK11143 glpQ glycerophosphodi 34.6 62 0.0013 31.7 4.7 45 11-55 8-52 (355)
133 COG4704 Uncharacterized protei 32.0 97 0.0021 25.7 4.6 34 44-77 59-93 (151)
134 PRK09752 adhesin; Provisional 31.2 8.7E+02 0.019 28.0 14.8 24 1-24 1-24 (1250)
135 PRK10081 entericidin B membran 31.0 41 0.00088 22.6 1.9 8 1-8 1-8 (48)
136 PF08194 DIM: DIM protein; In 30.3 59 0.0013 20.4 2.4 6 2-7 1-6 (36)
137 COG3015 CutF Uncharacterized l 30.0 77 0.0017 27.1 3.8 42 1-42 1-42 (178)
138 TIGR03656 IsdC heme uptake pro 29.7 1.9E+02 0.004 26.2 6.4 26 44-75 45-70 (217)
139 TIGR03042 PS_II_psbQ_bact phot 28.4 54 0.0012 27.5 2.7 22 1-22 1-22 (142)
140 PRK15346 outer membrane secret 26.0 1.2E+02 0.0026 31.2 5.3 11 61-71 50-60 (499)
141 PF06316 Ail_Lom: Enterobacter 25.0 62 0.0013 28.8 2.5 16 1-16 1-16 (199)
142 PRK13618 psbV cytochrome c-550 23.8 1.3E+02 0.0027 26.0 4.2 32 28-59 33-64 (163)
143 PF15284 PAGK: Phage-encoded v 23.7 42 0.0009 23.6 1.0 12 1-12 1-12 (61)
144 smart00722 CASH Domain present 23.7 3.8E+02 0.0082 21.3 8.5 13 158-170 44-56 (146)
145 PF10913 DUF2706: Protein of u 22.5 93 0.002 21.1 2.4 14 1-14 1-14 (60)
146 KOG4063 Major epididymal secre 21.4 73 0.0016 26.9 2.1 16 1-16 2-17 (158)
147 COG4143 TbpA ABC-type thiamine 20.9 1.7E+02 0.0036 28.3 4.7 54 1-58 1-54 (336)
148 PF02402 Lysis_col: Lysis prot 20.1 59 0.0013 21.3 1.0 16 1-16 1-16 (46)
149 PRK10802 peptidoglycan-associa 20.0 2.4E+02 0.0051 24.5 5.2 16 62-77 67-82 (173)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=4.4e-78 Score=585.27 Aligned_cols=372 Identities=52% Similarity=0.968 Sum_probs=339.9
Q ss_pred cccccccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCC
Q 048431 23 HSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTD 102 (396)
Q Consensus 23 ~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~ 102 (396)
++...+++++|++|||++||.+|+|+|||+|+++||++.+|++|+||+|+|++++|.|+++||+ +++|+++|+|+++.+
T Consensus 20 ~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d 98 (394)
T PLN02155 20 VSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGTVVAPED 98 (394)
T ss_pred ccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeEEECccc
Confidence 3445568999999999999999999999999987899889999999999999999999999999 999999999999888
Q ss_pred ccccCCCcceEEEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeee
Q 048431 103 YRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQ 182 (396)
Q Consensus 103 ~~~~~~~~~~i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~ 182 (396)
+..|.....|+.+.+.+|+.|.||+|||+|+.||.....+ .+.+.+|++++|.+|+|++|++++++|+|.|++++..|+
T Consensus 99 ~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~-~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~ 177 (394)
T PLN02155 99 YRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSG-QNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCT 177 (394)
T ss_pred cccccccceeEEEECcCCCEEEccEEecCceeEEEcccCC-CCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECee
Confidence 8877655679999999999999999999999999864332 344557889999999999999999999999999999999
Q ss_pred cEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCCCEE
Q 048431 183 DVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQ 262 (396)
Q Consensus 183 nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ 262 (396)
|++|++++|.++.+++|+||||+.+|+||+|+||+|+++||||+++++++||+|+||.|..+||++|||+|++...++++
T Consensus 178 nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~ 257 (394)
T PLN02155 178 NVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVE 257 (394)
T ss_pred eEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEE
Confidence 99999999999988899999999999999999999999999999999999999999999999999999998876578899
Q ss_pred EEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEee
Q 048431 263 NVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTS 342 (396)
Q Consensus 263 ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~ 342 (396)
||+|+||+|.++.+|++||+|.+.++|.++||+|+||+|+++++||.|++.|+.....|+.+.+.+.|+||+|+||+++.
T Consensus 258 nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~ 337 (394)
T PLN02155 258 NVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTS 337 (394)
T ss_pred EEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEe
Confidence 99999999999999999999865478999999999999999999999999997654456555566899999999999998
Q ss_pred CCCeeEEEeeCCCCceecEEEEeEEEEecCC-cccceeeeceecccceecCCCCC
Q 048431 343 ATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQ-EAKSSCNNVIGEALGLVQPNSCL 396 (396)
Q Consensus 343 ~~~~~~~i~~~~~~~~~ni~~~ni~v~~~~~-~~~~~c~~~~~~~~~~~~~~~~~ 396 (396)
....++.+.|++..||+||+|+||++...++ +.+++|.||+|...+++.|.+|+
T Consensus 338 ~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 338 ATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred cCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence 8666899999999999999999999998864 45899999999999988999996
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=2.7e-76 Score=581.57 Aligned_cols=367 Identities=40% Similarity=0.743 Sum_probs=335.4
Q ss_pred ccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCc-eEEEeceeecccCCCCcEEEEEeeEEEeeCCcccc
Q 048431 28 STIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKG-RYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVL 106 (396)
Q Consensus 28 ~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G-~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~ 106 (396)
+++++|+||||++||.+|||+|||+||++||++.+|++|+||+| +|+++++.|.++||+ +++|+++|+|+++.+...|
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~w 128 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDVW 128 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHHc
Confidence 46899999999999999999999999987899889999999999 599999999888888 9999999999999999988
Q ss_pred CCC--cceEEEeceeeEEEEc-eEEeCCCCCcccccc--cCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeee
Q 048431 107 GQA--NNWLSFEGVSHVSIIG-GALDAKGTSLWACKT--AAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRC 181 (396)
Q Consensus 107 ~~~--~~~i~~~~~~nv~I~G-g~idg~g~~~w~~~~--~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~ 181 (396)
+.. ..|+.+.+.+|++|.| |+|||+|+.||+... ........||++|+|.+|+|++|++++++|+|.|++++..|
T Consensus 129 ~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~ 208 (443)
T PLN02793 129 KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNC 208 (443)
T ss_pred cCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEcc
Confidence 743 5799999999999999 999999999997532 11122346899999999999999999999999999999999
Q ss_pred ecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCCCE
Q 048431 182 QDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGV 261 (396)
Q Consensus 182 ~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~ 261 (396)
+|++|+|++|.++.+.+|+||||+.+|+||+|+||+|+++||||+++++++||+|+||+|..+||++|||+|.+...+.+
T Consensus 209 ~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V 288 (443)
T PLN02793 209 RRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEV 288 (443)
T ss_pred CcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcE
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999887666789
Q ss_pred EEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEe
Q 048431 262 QNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGT 341 (396)
Q Consensus 262 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~ 341 (396)
+||+|+||+|.++.+|++||+|.+ ++|.++||+|+||+|+++.+||.|++.|+.....|....+.+.|+||+|+||+++
T Consensus 289 ~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt 367 (443)
T PLN02793 289 RDITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGT 367 (443)
T ss_pred EEEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEE
Confidence 999999999999999999999987 7899999999999999999999999999764444555566789999999999999
Q ss_pred eCCCeeEEEeeCCCCceecEEEEeEEEEecC-CcccceeeeceecccceecCCCCC
Q 048431 342 SATPIAIKFDCSTKYPCKGIRLHNVHLRHLK-QEAKSSCNNVIGEALGLVQPNSCL 396 (396)
Q Consensus 342 ~~~~~~~~i~~~~~~~~~ni~~~ni~v~~~~-~~~~~~c~~~~~~~~~~~~~~~~~ 396 (396)
.....++.+.|++..||+||+|+||++...+ +...+.|.|++|...|.+.|+||+
T Consensus 368 ~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 368 SATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred EcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccc
Confidence 8655689999999999999999999999875 455799999999999999999996
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=7.1e-75 Score=568.90 Aligned_cols=366 Identities=42% Similarity=0.721 Sum_probs=332.7
Q ss_pred cccccccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCc-eEEEeceeecccCCCCcEEEEEeeEEEeeC
Q 048431 23 HSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKG-RYLLGSVAFRSECKSPSITFLINGTLVAPT 101 (396)
Q Consensus 23 ~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G-~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~ 101 (396)
..++++++++|+||||++||.+|||+|||+|+++||++.++++|+||+| +|+++++.|+++||+ +++|+++|+|+++.
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s~ 138 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSASQ 138 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeCC
Confidence 4445688999999999999999999999999988899888899999999 699999999998888 99999999999999
Q ss_pred CccccCCCcceEEEeceeeEEEEc---eEEeCCCCCcccccccC--CCCCCCCceEEEEEeecCeEEEEEEEecCCcceE
Q 048431 102 DYRVLGQANNWLSFEGVSHVSIIG---GALDAKGTSLWACKTAA--GSNCPNGATTLSITKSNNIRINGLLSLNSQMYHI 176 (396)
Q Consensus 102 ~~~~~~~~~~~i~~~~~~nv~I~G---g~idg~g~~~w~~~~~~--~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i 176 (396)
+..+|+....|+.+.+++||+|.| |+|||+|+.||...... ...+..||++++|.+|+|++|++++++|+|+|++
T Consensus 139 d~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i 218 (431)
T PLN02218 139 KRSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQI 218 (431)
T ss_pred ChhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEE
Confidence 999997767899999999999999 99999999999753211 1224569999999999999999999999999999
Q ss_pred EEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccC
Q 048431 177 VINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDL 256 (396)
Q Consensus 177 ~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (396)
++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||+|.+.
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~ 298 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDN 298 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCC
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEE
Q 048431 257 DEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQ 336 (396)
Q Consensus 257 ~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ 336 (396)
..+.++||+|+||+|.++.+|++||+|.+ ++|.++||+|+|++|+++++||.|++.|+.... |+.+.+.+.|+||+|+
T Consensus 299 ~~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~-~~~~~s~v~I~nI~~~ 376 (431)
T PLN02218 299 SKAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKSK-CTSQQSAVQVKNVVYR 376 (431)
T ss_pred CCceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCCC-CCCCCCCeEEEEEEEE
Confidence 56789999999999999999999999987 889999999999999999999999999986432 5555567899999999
Q ss_pred eEEEeeCCCeeEEEeeCCCCceecEEEEeEEEEecCCcccceeeeceecccceecCCCCC
Q 048431 337 DIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAKSSCNNVIGEALGLVQPNSCL 396 (396)
Q Consensus 337 ni~~~~~~~~~~~i~~~~~~~~~ni~~~ni~v~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 396 (396)
||+++.+...++.+.|+++.||+||+|+||++... ...|.||.+...|+ .|+.|.
T Consensus 377 NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~----~~~c~n~~~~~~~~-~~p~c~ 431 (431)
T PLN02218 377 NISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG----KATCTNANVVDKGA-VSPQCN 431 (431)
T ss_pred eEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC----eeeEEEeeEEEccc-CCCCCC
Confidence 99999876668999999999999999999999832 56899999999995 455895
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=2.1e-74 Score=562.05 Aligned_cols=366 Identities=40% Similarity=0.767 Sum_probs=328.1
Q ss_pred cccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCcccc
Q 048431 27 TSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVL 106 (396)
Q Consensus 27 ~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~ 106 (396)
++.+++|+||||++||.+|||+|||+|++++|++.+|++|+||+|+|+++++.|+++|++ ...|.+ +|+++.+.++|
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~~y 109 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTN-VSSLTF--TLKAATDLSRY 109 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCc-ceeEEE--EEEcCCCHHHC
Confidence 457899999999999999999999999988899888899999999999999999988864 233333 89999999999
Q ss_pred CCCcceEEEeceeeEEEEc-eEEeCCCCCcccccccC-CCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeeecE
Q 048431 107 GQANNWLSFEGVSHVSIIG-GALDAKGTSLWACKTAA-GSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDV 184 (396)
Q Consensus 107 ~~~~~~i~~~~~~nv~I~G-g~idg~g~~~w~~~~~~-~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv 184 (396)
+....|+.+..++|++|.| |+|||+|+.||+..... .+....||++|+|.+|+|++|++++++|+|.|++++..|+++
T Consensus 110 ~~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v 189 (404)
T PLN02188 110 GSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNF 189 (404)
T ss_pred CCccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccE
Confidence 8766799998899999999 99999999999754211 123457999999999999999999999999999999999999
Q ss_pred EEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCCCEEEE
Q 048431 185 LVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNV 264 (396)
Q Consensus 185 ~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni 264 (396)
+|++++|.++.+++|+||||+.+|++|+|+||+|+++||||+++++++||+|+||.|..+||++|||.|++.+.+.++||
T Consensus 190 ~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV 269 (404)
T PLN02188 190 KGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGL 269 (404)
T ss_pred EEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEE
Confidence 99999999988889999999999999999999999999999999999999999999999999999999887667889999
Q ss_pred EEEeeEEeCCccEEEEEeecCC-CCceEEcEEEEeeEeecCCccEEEEeecCCCCCCCC-CCCcceEEEeEEEEeEEEee
Q 048431 265 TVFKTVFTGTTNGLRIKSWARP-SNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCP-GQISGVKISDVIYQDIRGTS 342 (396)
Q Consensus 265 ~i~n~~~~~~~~gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~i~nI~~~ni~~~~ 342 (396)
+|+||+|.++.+|++||+|.+. ++|.++||+|+||+|+++.+||.|++.|+.... |. ..+..+.|+||+|+||+++.
T Consensus 270 ~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~-~~~~~~s~v~I~nIt~~nI~gt~ 348 (404)
T PLN02188 270 VVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYS-CESKYPSGVTLSDIYFKNIRGTS 348 (404)
T ss_pred EEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCC-CCcCCCCCcEEEeEEEEEEEEEe
Confidence 9999999999999999999753 468999999999999999999999999875432 32 23356799999999999998
Q ss_pred CCCeeEEEeeCCCCceecEEEEeEEEEecC--CcccceeeeceecccceecCCCCC
Q 048431 343 ATPIAIKFDCSTKYPCKGIRLHNVHLRHLK--QEAKSSCNNVIGEALGLVQPNSCL 396 (396)
Q Consensus 343 ~~~~~~~i~~~~~~~~~ni~~~ni~v~~~~--~~~~~~c~~~~~~~~~~~~~~~~~ 396 (396)
....++.+.|+++.||+||+|+||++...+ +...+.|.||++...|.+.|+|||
T Consensus 349 ~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 349 SSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred cCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 766689999999999999999999999874 345799999999999999999998
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=2.9e-74 Score=562.34 Aligned_cols=365 Identities=39% Similarity=0.684 Sum_probs=327.3
Q ss_pred cccccccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCc-eEEEeceeecccCCCCcEEEEEeeEEEeeC
Q 048431 23 HSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKG-RYLLGSVAFRSECKSPSITFLINGTLVAPT 101 (396)
Q Consensus 23 ~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G-~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~ 101 (396)
.....++.+||++|||++||.+|||+|||+|+++||++.++++|+||+| +|+++++.|+++||++.++++++|++.++.
T Consensus 16 ~~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~ 95 (456)
T PLN03003 16 QIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPS 95 (456)
T ss_pred eeeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCc
Confidence 3445678899999999999999999999999999898889999999999 589999999998876358888999998866
Q ss_pred CccccCC-CcceEEEeceeeEEEEc-eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEe
Q 048431 102 DYRVLGQ-ANNWLSFEGVSHVSIIG-GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVIN 179 (396)
Q Consensus 102 ~~~~~~~-~~~~i~~~~~~nv~I~G-g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~ 179 (396)
. ..|.. ...||.+.++++++|.| |+|||+|+.||+.. ..||+++.|.+|+|++|++++++|+|.|++++.
T Consensus 96 ~-~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~-------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~ 167 (456)
T PLN03003 96 K-GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK-------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHIS 167 (456)
T ss_pred c-ccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc-------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEe
Confidence 4 34543 35699999999999999 99999999999753 258999999999999999999999999999999
Q ss_pred eeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCC
Q 048431 180 RCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEE 259 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~ 259 (396)
.|++++|++++|.++.+++|+||||+.+|+||+|+||.|.++||||+++++++||+|+||+|.++||++|||+|.++..+
T Consensus 168 ~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~ 247 (456)
T PLN03003 168 ECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETA 247 (456)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcc
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999998876557
Q ss_pred CEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCCccEEEEeecCCCCC--CCCCCCcceEEEeEEEEe
Q 048431 260 GVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNL--NCPGQISGVKISDVIYQD 337 (396)
Q Consensus 260 ~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~i~nI~~~n 337 (396)
.++||+|+||+|.++.+|++||+|.+ ++|.++||+|+|++|+++.+||.|++.|+.... .|....+.+.|+||+|+|
T Consensus 248 ~V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~N 326 (456)
T PLN03003 248 TVENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSN 326 (456)
T ss_pred eEEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEe
Confidence 79999999999999999999999987 789999999999999999999999999975322 133344668999999999
Q ss_pred EEEeeCCCeeEEEeeCCCCceecEEEEeEEEEecC----CcccceeeeceecccceecCCCCC
Q 048431 338 IRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLK----QEAKSSCNNVIGEALGLVQPNSCL 396 (396)
Q Consensus 338 i~~~~~~~~~~~i~~~~~~~~~ni~~~ni~v~~~~----~~~~~~c~~~~~~~~~~~~~~~~~ 396 (396)
|+++.....++.+.|++..||+||+|+||++...+ ....+.|.||.|...+++-|.||+
T Consensus 327 I~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 327 FIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred EEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCcc
Confidence 99998777789999999999999999999998762 246899999999997755566996
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=2e-73 Score=553.70 Aligned_cols=355 Identities=40% Similarity=0.717 Sum_probs=326.8
Q ss_pred cccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCC-CcEEEecCc-eEEEeceeecccCCCCcEEEEEeeEEEeeCCcc
Q 048431 27 TSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNE-SATIYVPKG-RYLLGSVAFRSECKSPSITFLINGTLVAPTDYR 104 (396)
Q Consensus 27 ~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~-g~~v~iP~G-~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~ 104 (396)
.+++++|+||||++||.+|||+|||+|++++|...+ +++|+||+| +|+++++.|+++|++.+++|+++|+|+++.+..
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 567899999999999999999999999988775322 379999999 799999999998875489999999999999999
Q ss_pred ccCC--CcceEEEeceeeEEEEc-eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeee
Q 048431 105 VLGQ--ANNWLSFEGVSHVSIIG-GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRC 181 (396)
Q Consensus 105 ~~~~--~~~~i~~~~~~nv~I~G-g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~ 181 (396)
.|+. ...|+.+.+++|++|.| |+|||+|+.||. +++|.+|+|++|++++++|+|.|++++..|
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~--------------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~ 188 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE--------------ALHISKCDNLTINGITSIDSPKNHISIKTC 188 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc--------------eEEEEeecCeEEeeeEEEcCCceEEEEecc
Confidence 8864 35699999999999999 999999999994 589999999999999999999999999999
Q ss_pred ecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCCCE
Q 048431 182 QDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGV 261 (396)
Q Consensus 182 ~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~ 261 (396)
++++|+|++|.++..++|+||||+.+|++|+|+||+|+++||||++++++.++.|+++.|..+||++|||+|.......+
T Consensus 189 ~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~V 268 (409)
T PLN03010 189 NYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKV 268 (409)
T ss_pred ccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCee
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999877655679
Q ss_pred EEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEe
Q 048431 262 QNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGT 341 (396)
Q Consensus 262 ~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~ 341 (396)
+||+|+||+|.++.+|++||+|.+ ++|.++||+|+||+|+++++||.|++.|+.....|..+.+.+.|+||+|+||+++
T Consensus 269 ~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT 347 (409)
T PLN03010 269 SDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGT 347 (409)
T ss_pred EEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEE
Confidence 999999999999999999999987 7899999999999999999999999999875554555668889999999999999
Q ss_pred eCCCeeEEEeeCCCCceecEEEEeEEEEecC-CcccceeeeceecccceecCCCCC
Q 048431 342 SATPIAIKFDCSTKYPCKGIRLHNVHLRHLK-QEAKSSCNNVIGEALGLVQPNSCL 396 (396)
Q Consensus 342 ~~~~~~~~i~~~~~~~~~ni~~~ni~v~~~~-~~~~~~c~~~~~~~~~~~~~~~~~ 396 (396)
.....++.+.|++..+|+||+|+||++..++ +++.+.|.||++...+.+.|.+|+
T Consensus 348 ~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 348 TSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred eCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCccc
Confidence 8777799999999999999999999999876 457899999999998999999996
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.4e-57 Score=437.62 Aligned_cols=322 Identities=35% Similarity=0.627 Sum_probs=276.9
Q ss_pred hhcCCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEEc-eEEeCCCCCcc
Q 048431 58 CASNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIG-GALDAKGTSLW 136 (396)
Q Consensus 58 ~~~~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-g~idg~g~~~w 136 (396)
|++.++++|+||+|+|+++++.|++.+.. +++++++|++.+......++. ..||.+.+++|++|.| |+|||+|+.||
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~ 78 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWW 78 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECET-TCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTC
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhh
Confidence 66677889999999999999999854444 899999999998855555544 6789999999999999 99999999999
Q ss_pred cccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEec
Q 048431 137 ACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSS 216 (396)
Q Consensus 137 ~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~ 216 (396)
+...........||+++.|..|+|++|++++++++|.|++++..|+|++|++++|.++.+.+|+|||++.+|+||+|+||
T Consensus 79 ~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~ 158 (326)
T PF00295_consen 79 DGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENC 158 (326)
T ss_dssp SSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESE
T ss_pred ccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEe
Confidence 86532113456799999999999999999999999999999999999999999999987779999999999999999999
Q ss_pred EEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEE
Q 048431 217 SIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRF 296 (396)
Q Consensus 217 ~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~ 296 (396)
+|+++||||+++++..||+|+||+|..+||++|||++.......++||+|+||+|.++.+|++||++.+ ++|.|+||+|
T Consensus 159 ~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-~~G~v~nI~f 237 (326)
T PF00295_consen 159 FIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-GGGYVSNITF 237 (326)
T ss_dssp EEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT-TSEEEEEEEE
T ss_pred ecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc-cceEEeceEE
Confidence 999999999999988899999999999999999999755433469999999999999999999999976 8899999999
Q ss_pred EeeEeecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeeCCCeeEEEeeCCCCceecEEEEeEEEEecCCccc
Q 048431 297 IDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLRHLKQEAK 376 (396)
Q Consensus 297 ~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~~~ni~v~~~~~~~~ 376 (396)
+|++|+++.+|+.|++.|... ..+..++..+.++||+|+||+++.....++.+.|.+..||+||+|+||+|.. +..+
T Consensus 238 ~ni~~~~v~~pi~i~~~y~~~-~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g~~~ 314 (326)
T PF00295_consen 238 ENITMENVKYPIFIDQDYRDG-GPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--GKKP 314 (326)
T ss_dssp EEEEEEEESEEEEEEEEECTT-EESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--SBSE
T ss_pred EEEEecCCceEEEEEeccccc-cccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--CCcC
Confidence 999999999999999998762 2233334567899999999999988777999999999999999999999997 3678
Q ss_pred ceeeeceec
Q 048431 377 SSCNNVIGE 385 (396)
Q Consensus 377 ~~c~~~~~~ 385 (396)
..|.|++..
T Consensus 315 ~~c~nv~~~ 323 (326)
T PF00295_consen 315 AQCKNVPSG 323 (326)
T ss_dssp SEEBSCCTT
T ss_pred eEEECCCCC
Confidence 999999754
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.2e-42 Score=338.03 Aligned_cols=274 Identities=33% Similarity=0.487 Sum_probs=233.6
Q ss_pred cccccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCceEEEeceeecccCCCCcEEEEE-ee-EEEeeCC
Q 048431 25 SATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLI-NG-TLVAPTD 102 (396)
Q Consensus 25 ~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~-~G-~l~~~~~ 102 (396)
+++...++|.+|||++||.+|+++|||+||+ +|++.+|++|+||+|+|+.++|+||| +++|++ +| +|+.+.+
T Consensus 77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~-~ca~a~Gg~V~lPaGtylsg~l~LKS-----~~~L~l~egatl~~~~~ 150 (542)
T COG5434 77 AATDTAFSVSDDGAVGDGATDNTAAIQAAID-ACASAGGGTVLLPAGTYLSGPLFLKS-----NVTLHLAEGATLLASSN 150 (542)
T ss_pred ccccceeeeccccccccCCccCHHHHHHHHH-hhhhhcCceEEECCceeEeeeEEEec-----ccEEEecCCceeeCCCC
Confidence 3346689999999999999999999999995 57778999999999999999999997 999999 57 9999999
Q ss_pred ccccCC---------C---------cceE-------------EEeceeeEE-EEc-eEEeCCCC----CcccccccCCCC
Q 048431 103 YRVLGQ---------A---------NNWL-------------SFEGVSHVS-IIG-GALDAKGT----SLWACKTAAGSN 145 (396)
Q Consensus 103 ~~~~~~---------~---------~~~i-------------~~~~~~nv~-I~G-g~idg~g~----~~w~~~~~~~~~ 145 (396)
+.+|+. . +..+ .....+|.. |.| ++++|+++ .||.......+.
T Consensus 151 p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~ 230 (542)
T COG5434 151 PKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETR 230 (542)
T ss_pred hhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhc
Confidence 998883 1 1112 222235555 777 88888652 266544310011
Q ss_pred ---CCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCC
Q 048431 146 ---CPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGD 222 (396)
Q Consensus 146 ---~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d 222 (396)
...||.++.+..|.||.+++++|.+++.|++|+..|+|++++|++|.+.... |+||+++.+|+||+|++|+|+++|
T Consensus 231 i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgD 309 (542)
T COG5434 231 IGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGD 309 (542)
T ss_pred ccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCC
Confidence 1158999999999999999999999999999999999999999999997654 999999999999999999999999
Q ss_pred ceEEeCCC-----------CccEEEEeeeEeCCce-EEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCCCCce
Q 048431 223 DCISIGPG-----------TNNLWIERVTCGPGHG-ISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGF 290 (396)
Q Consensus 223 D~i~i~~~-----------~~ni~i~n~~~~~~~g-i~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~ 290 (396)
|||+++++ ++++.|+||.+..+|| +.+||+ ..++++||++|||.|.++.+|++||+..+ ++|.
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~ 384 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGGG 384 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc-ccee
Confidence 99999996 6999999999999997 888998 67899999999999999999999999977 7799
Q ss_pred EEcEEEEeeEeecCCccEEE
Q 048431 291 VRGIRFIDALMQNVQHPIII 310 (396)
Q Consensus 291 v~nI~~~ni~~~~~~~~i~i 310 (396)
++||+|+++++.++..+..|
T Consensus 385 v~nI~~~~~~~~nv~t~~~i 404 (542)
T COG5434 385 VRNIVFEDNKMRNVKTKLSI 404 (542)
T ss_pred EEEEEEecccccCcccceee
Confidence 99999999999998654444
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.94 E-value=1e-25 Score=216.90 Aligned_cols=247 Identities=19% Similarity=0.253 Sum_probs=197.1
Q ss_pred ccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCceEEEeceeecccCCCCcEEEEEe-eEEEeeCCcccc
Q 048431 28 STIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSECKSPSITFLIN-GTLVAPTDYRVL 106 (396)
Q Consensus 28 ~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~-G~l~~~~~~~~~ 106 (396)
.+.+++++|||++|+.+|+|+|||+||++| + +++++|.+|+|+|+.+++.|++ +++|.++ |.....-+
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L~s-----pltL~G~~gAt~~vId---- 103 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRLPS-----GAQLIGVRGATRLVFT---- 103 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEECC-----CcEEEecCCcEEEEEc----
Confidence 556899999999999999999999999764 4 4678999999999999999986 8999987 33211101
Q ss_pred CCCcceEEEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeee----
Q 048431 107 GQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQ---- 182 (396)
Q Consensus 107 ~~~~~~i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~---- 182 (396)
....++...++++|+|+|-+|+++|..| ..++.+|++..|++++|++++|.++..|++.+..|+
T Consensus 104 -G~~~lIiai~A~nVTIsGLtIdGsG~dl-----------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~ 171 (455)
T TIGR03808 104 -GGPSLLSSEGADGIGLSGLTLDGGGIPL-----------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDIS 171 (455)
T ss_pred -CCceEEEEecCCCeEEEeeEEEeCCCcc-----------cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEe
Confidence 1134566667999999999999999643 246789999999999999999999988999999999
Q ss_pred ------------------cEEEEeEEEEcCCC--------------------------------CCCCCCeeeeceeeEE
Q 048431 183 ------------------DVLVEGAKIIAAGD--------------------------------SPNTDGIHVQQSRNVI 212 (396)
Q Consensus 183 ------------------nv~i~n~~i~~~~~--------------------------------~~~~DGi~~~~s~nv~ 212 (396)
++.|++.+|....+ ....+||+++.+.+++
T Consensus 172 ~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~ 251 (455)
T TIGR03808 172 GNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVI 251 (455)
T ss_pred cceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeE
Confidence 88888888886444 2357899999999999
Q ss_pred EEecEEecCC-ceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeec-CCCCce
Q 048431 213 IKSSSIKTGD-DCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWA-RPSNGF 290 (396)
Q Consensus 213 I~n~~i~~~d-D~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~-~~~~g~ 290 (396)
|++++|+..+ |+|.+.+ ++|++|++++|..-.=+++.++ ...+.-.|+|+++.+...|+.+..+. +.+...
T Consensus 252 V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~ 324 (455)
T TIGR03808 252 VRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAV 324 (455)
T ss_pred EECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceEEEEeecCCceEEE
Confidence 9999999998 9999988 8899999999974321243322 12232578889999999999998774 335568
Q ss_pred EEcEEEEeeEeecC
Q 048431 291 VRGIRFIDALMQNV 304 (396)
Q Consensus 291 v~nI~~~ni~~~~~ 304 (396)
++...++|++-+..
T Consensus 325 ~~gn~irn~~~~~p 338 (455)
T TIGR03808 325 VQGNIIRNLIPKRP 338 (455)
T ss_pred EecceeeccccCCC
Confidence 88999999988763
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.87 E-value=1.2e-20 Score=172.22 Aligned_cols=60 Identities=37% Similarity=0.567 Sum_probs=49.0
Q ss_pred EEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCceEEEec-eeecccCCCCcEEEEEee
Q 048431 30 IYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGS-VAFRSECKSPSITFLING 95 (396)
Q Consensus 30 ~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~-l~l~~~~~~~n~~l~~~G 95 (396)
.++|++|||+|||.+|||+|||+||+++ +..++++||||||+|++.. +.+++ +++|.++|
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G~Y~i~~~l~~~s-----~v~l~G~g 61 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPGTYRISGTLIIPS-----NVTLRGAG 61 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SEEEEESS-EEE-T-----TEEEEESS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCcEEEEeCCeEcCC-----CeEEEccC
Confidence 3799999999999999999999999544 5578999999999999986 88886 99999986
No 11
>PLN02793 Probable polygalacturonase
Probab=99.86 E-value=3.8e-19 Score=176.11 Aligned_cols=217 Identities=16% Similarity=0.237 Sum_probs=169.9
Q ss_pred cEEEEEeeEEEeeCCccccCC------------CcceEEEeceeeEEEEc-eEEeCCCCCcccccccCCCCCCCCceEEE
Q 048431 88 SITFLINGTLVAPTDYRVLGQ------------ANNWLSFEGVSHVSIIG-GALDAKGTSLWACKTAAGSNCPNGATTLS 154 (396)
Q Consensus 88 n~~l~~~G~l~~~~~~~~~~~------------~~~~i~~~~~~nv~I~G-g~idg~g~~~w~~~~~~~~~~~~~p~~i~ 154 (396)
|++|.+.|+|.+... ..|.. ...++.+.+++|++|+| ...+.. .+.+.
T Consensus 144 ni~ItG~G~IDG~G~-~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp------------------~~~i~ 204 (443)
T PLN02793 144 HLTVEGGGTVNGMGH-EWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ------------------QMHIA 204 (443)
T ss_pred eEEEEeceEEECCCc-ccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC------------------CeEEE
Confidence 788998888876432 12211 12468899999999999 444332 34788
Q ss_pred EEeecCeEEEEEEEecC----CcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCC
Q 048431 155 ITKSNNIRINGLLSLNS----QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGP 229 (396)
Q Consensus 155 ~~~~~nv~i~~~~i~~~----~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~ 229 (396)
+.+|+||+|++++|.++ ..+++++.+|+||+|+|++|.+.+ |+|.+. .|+||+|+||....+. +|++++
T Consensus 205 ~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gD-----DcIaik~~s~nI~I~n~~c~~Gh-GisIGS 278 (443)
T PLN02793 205 FTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGD-----DCISIVGNSSRIKIRNIACGPGH-GISIGS 278 (443)
T ss_pred EEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCC-----CeEEecCCcCCEEEEEeEEeCCc-cEEEec
Confidence 99999999999999863 457999999999999999999854 788886 6899999999998774 799987
Q ss_pred --------CCccEEEEeeeEeCC-ceEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCC---------CCceE
Q 048431 230 --------GTNNLWIERVTCGPG-HGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARP---------SNGFV 291 (396)
Q Consensus 230 --------~~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~---------~~g~v 291 (396)
+.+||+|+||++.+. .|+.|++.... .+.++||+|+|++|.+..+++.|...+.. ....+
T Consensus 279 lg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~--~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I 356 (443)
T PLN02793 279 LGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGG--SGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKV 356 (443)
T ss_pred ccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCC--CEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEE
Confidence 268999999999876 69999986322 35799999999999999999999876421 12468
Q ss_pred EcEEEEeeEeecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeeC
Q 048431 292 RGIRFIDALMQNVQ-HPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSA 343 (396)
Q Consensus 292 ~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~ 343 (396)
+||+|+|++.+... .++.+... +..+++||+|+||+++..
T Consensus 357 ~nI~~~nI~Gt~~~~~ai~l~cs------------~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 357 ENISFVHIKGTSATEEAIKFACS------------DSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred EeEEEEEEEEEEcccccEEEEeC------------CCCCEeeEEEEeeEEEec
Confidence 99999999987753 45555421 233799999999998855
No 12
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.85 E-value=1.2e-18 Score=170.78 Aligned_cols=220 Identities=19% Similarity=0.209 Sum_probs=170.3
Q ss_pred cEEEEEeeEEEeeCCccccCC-----------CcceEEEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEE
Q 048431 88 SITFLINGTLVAPTDYRVLGQ-----------ANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSIT 156 (396)
Q Consensus 88 n~~l~~~G~l~~~~~~~~~~~-----------~~~~i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~ 156 (396)
+++|.+.|+|.+... ..|.. ...++.+..++|+.|+|-++.-. ..+.+++.
T Consensus 123 ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nS-----------------p~w~i~~~ 184 (404)
T PLN02188 123 GLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNS-----------------KFFHIALV 184 (404)
T ss_pred eEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcC-----------------CCeEEEEE
Confidence 788888888887553 23321 12468888999999999443321 23479999
Q ss_pred eecCeEEEEEEEecC----CcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCC--
Q 048431 157 KSNNIRINGLLSLNS----QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGP-- 229 (396)
Q Consensus 157 ~~~nv~i~~~~i~~~----~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~-- 229 (396)
+|+||+|++++|.++ ..+++++.+|+||+|+|++|.+.+ |+|.+. .++||+|+||....+ .++++++
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GD-----DcIaiksg~~nI~I~n~~c~~g-hGisiGSlG 258 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGD-----DCISIGQGNSQVTITRIRCGPG-HGISVGSLG 258 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCC-----cEEEEccCCccEEEEEEEEcCC-CcEEeCCCC
Confidence 999999999999863 347899999999999999999854 788886 578999999999766 5799877
Q ss_pred ------CCccEEEEeeeEeCC-ceEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecC---------CCCceEEc
Q 048431 230 ------GTNNLWIERVTCGPG-HGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWAR---------PSNGFVRG 293 (396)
Q Consensus 230 ------~~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~---------~~~g~v~n 293 (396)
+.+||+|+||++... +|+.|++.......+.++||+|+|++|.+...++.|.+.+. .....++|
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~n 338 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSD 338 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEe
Confidence 269999999999876 69999986433234679999999999999999999986432 12367999
Q ss_pred EEEEeeEeecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeeC
Q 048431 294 IRFIDALMQNVQ-HPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSA 343 (396)
Q Consensus 294 I~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~ 343 (396)
|+|+||+.+... .++.+... +..+++||+|+||+++..
T Consensus 339 It~~nI~gt~~~~~a~~l~cs------------~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 339 IYFKNIRGTSSSQVAVLLKCS------------RGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEEEEEEEecCceEEEEEEC------------CCCCEeeEEEEeeEEEec
Confidence 999999997753 34444321 234799999999999755
No 13
>PLN02218 polygalacturonase ADPG
Probab=99.83 E-value=2.4e-18 Score=169.72 Aligned_cols=217 Identities=15% Similarity=0.165 Sum_probs=167.3
Q ss_pred cEEEEEe--eEEEeeCCccccCC------------CcceEEEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEE
Q 048431 88 SITFLIN--GTLVAPTDYRVLGQ------------ANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTL 153 (396)
Q Consensus 88 n~~l~~~--G~l~~~~~~~~~~~------------~~~~i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i 153 (396)
|++|.+. |+|.+.. ...|.. ...++.+.+++|++|+|-++... ..+.+
T Consensus 157 ni~I~G~~~GtIDG~G-~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nS-----------------p~w~i 218 (431)
T PLN02218 157 NLSVDGGSTGVVDGNG-ETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNA-----------------QQIQI 218 (431)
T ss_pred EEEEECCCCcEEeCCc-hhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcC-----------------CCEEE
Confidence 7888885 7776543 122311 12368899999999999444322 23479
Q ss_pred EEEeecCeEEEEEEEecC----CcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeec-eeeEEEEecEEecCCceEEeC
Q 048431 154 SITKSNNIRINGLLSLNS----QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQ-SRNVIIKSSSIKTGDDCISIG 228 (396)
Q Consensus 154 ~~~~~~nv~i~~~~i~~~----~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~ 228 (396)
++.+|+||+|++++|.++ ..+++++.+|+||+|+|++|.+.+ |+|.+.+ ++||+|+||.+..+ .+++++
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGD-----DcIaIksgs~nI~I~n~~c~~G-HGisIG 292 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGD-----DCISIESGSQNVQINDITCGPG-HGISIG 292 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCC-----ceEEecCCCceEEEEeEEEECC-CCEEEC
Confidence 999999999999999863 457999999999999999999854 6788864 88999999999765 579998
Q ss_pred CC--------CccEEEEeeeEeCC-ceEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCC--------CCceE
Q 048431 229 PG--------TNNLWIERVTCGPG-HGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARP--------SNGFV 291 (396)
Q Consensus 229 ~~--------~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~v 291 (396)
+- .+||+|+||++.+. .|+.|++.... .+.++||+|+|++|.+..+++.|...+.. ....|
T Consensus 293 S~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg--~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I 370 (431)
T PLN02218 293 SLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGG--SGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQV 370 (431)
T ss_pred cCCCCCCCceEEEEEEEccEEecCCcceEEeecCCC--CeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEE
Confidence 82 57999999999875 59999987322 36799999999999999999999876421 23469
Q ss_pred EcEEEEeeEeecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEee
Q 048431 292 RGIRFIDALMQNVQ-HPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTS 342 (396)
Q Consensus 292 ~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~ 342 (396)
+||+|+||+.+... .++.+... +..+++||+|+||.++.
T Consensus 371 ~nI~~~NI~gtsa~~~ai~l~cs------------~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 371 KNVVYRNISGTSASDVAITFNCS------------KNYPCQGIVLDNVNIKG 410 (431)
T ss_pred EEEEEEeEEEEecCCcEEEEEEC------------CCCCEeeEEEEeEEEEC
Confidence 99999999998653 34444421 23379999999999874
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.83 E-value=5.7e-18 Score=166.64 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=161.7
Q ss_pred eEEEEEeecCeEEEEEEEecC---Ccc--------eEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEe
Q 048431 151 TTLSITKSNNIRINGLLSLNS---QMY--------HIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIK 219 (396)
Q Consensus 151 ~~i~~~~~~nv~i~~~~i~~~---~~~--------~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~ 219 (396)
..|.+.+.++++|.|--..+. ..| .+.+..|+|+.|+++++.++.. --+++..|++|+|++..|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 479999999999998433332 222 5889999999999999998643 3478889999999999998
Q ss_pred c-----CCceEEeCCCCccEEEEeeeEeCCc-eEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCC-CCceEE
Q 048431 220 T-----GDDCISIGPGTNNLWIERVTCGPGH-GISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARP-SNGFVR 292 (396)
Q Consensus 220 ~-----~dD~i~i~~~~~ni~i~n~~~~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~-~~g~v~ 292 (396)
+ +.|||.+.+ ++||+|+||.+..++ .++|++ +.+||+|+|+++.. .+|+.|++.... ..+.|+
T Consensus 181 ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiks--------gs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 181 APESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINS--------GTSNIHISGIDCGP-GHGISIGSLGKDGETATVE 250 (456)
T ss_pred CCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCC--------CCccEEEEeeEEEC-CCCeEEeeccCCCCcceEE
Confidence 7 468999988 999999999999886 599975 34799999999965 589999987431 235799
Q ss_pred cEEEEeeEeecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeeCCCeeEEEeeCC--------------CCce
Q 048431 293 GIRFIDALMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCST--------------KYPC 358 (396)
Q Consensus 293 nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~--------------~~~~ 358 (396)
||+|+|+++.+..+++.|++... +.+.++||+|+||.+..... |+.++... ...+
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~-pI~Idq~Y~~~~~~~~~~~~~s~v~I 319 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVEN-PIIIDQFYNGGDSDNAKDRKSSAVEV 319 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccc-eEEEEcccCCCCCCCcccCCCCCcEE
Confidence 99999999999999999998643 23589999999999987765 77775321 1247
Q ss_pred ecEEEEeEEEEecC-Ccccceee
Q 048431 359 KGIRLHNVHLRHLK-QEAKSSCN 380 (396)
Q Consensus 359 ~ni~~~ni~v~~~~-~~~~~~c~ 380 (396)
+||+|+||+..... .++.+.|+
T Consensus 320 snI~f~NI~GTs~~~~ai~l~Cs 342 (456)
T PLN03003 320 SKVVFSNFIGTSKSEYGVDFRCS 342 (456)
T ss_pred EeEEEEeEEEEeCccceEEEEeC
Confidence 99999999987554 23334444
No 15
>PLN03010 polygalacturonase
Probab=99.83 E-value=9e-18 Score=164.21 Aligned_cols=205 Identities=15% Similarity=0.225 Sum_probs=160.6
Q ss_pred eEEEEEeecCeEEEEEEEecC---Ccc-eEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEec-----C
Q 048431 151 TTLSITKSNNIRINGLLSLNS---QMY-HIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKT-----G 221 (396)
Q Consensus 151 ~~i~~~~~~nv~i~~~~i~~~---~~~-~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-----~ 221 (396)
..+.|.+.+|++|.|--..+. ..| .+.+..|+|++|+++++.++.. .-+++..|++|+|+|..|.+ +
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~----~~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPK----NHISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCc----eEEEEeccccEEEEEEEEeCCCCCCC
Confidence 368899999999999655543 334 5889999999999999998642 34788899999999999986 4
Q ss_pred CceEEeCCCCccEEEEeeeEeCCc-eEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCC-CCceEEcEEEEee
Q 048431 222 DDCISIGPGTNNLWIERVTCGPGH-GISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARP-SNGFVRGIRFIDA 299 (396)
Q Consensus 222 dD~i~i~~~~~ni~i~n~~~~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~-~~g~v~nI~~~ni 299 (396)
.|||.+.+ ++||+|+||++..++ .|+|++. ..++.|+++.+.. .+|+.|++.... ....|+||+|+|+
T Consensus 207 TDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 207 TDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred CCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEee
Confidence 68999988 899999999999886 5999763 2467777777765 479999987431 2356999999999
Q ss_pred EeecCCccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeeCCCeeEEEeeC---CC---------CceecEEEEeEE
Q 048431 300 LMQNVQHPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCS---TK---------YPCKGIRLHNVH 367 (396)
Q Consensus 300 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~---~~---------~~~~ni~~~ni~ 367 (396)
++.+..++++|+.... ..+.++||+|+||++..... |+.++.. .. ..++||+|+||+
T Consensus 277 ~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~~-pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 277 TFNQTTNGARIKTWQG----------GQGYARNISFENITLINTKN-PIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred EEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCCc-cEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 9999999999998643 34589999999999998765 6777532 11 147999999999
Q ss_pred EEecC-Ccccceee
Q 048431 368 LRHLK-QEAKSSCN 380 (396)
Q Consensus 368 v~~~~-~~~~~~c~ 380 (396)
-+... ..+.+.|+
T Consensus 346 GT~~~~~~i~l~Cs 359 (409)
T PLN03010 346 GTTSNENAITLKCS 359 (409)
T ss_pred EEeCCCccEEEEeC
Confidence 87654 34455554
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.82 E-value=5e-18 Score=165.26 Aligned_cols=276 Identities=17% Similarity=0.196 Sum_probs=154.8
Q ss_pred CCcEEEecCceEEEec---eeecccCCCCc-EEEEEe-eEEEeeCCccccCCCcceEEEeceeeEEEEc-eEEeCCCCCc
Q 048431 62 ESATIYVPKGRYLLGS---VAFRSECKSPS-ITFLIN-GTLVAPTDYRVLGQANNWLSFEGVSHVSIIG-GALDAKGTSL 135 (396)
Q Consensus 62 ~g~~v~iP~G~Y~~~~---l~l~~~~~~~n-~~l~~~-G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-g~idg~g~~~ 135 (396)
...+|||+||+|.++. +.|++ | .+++++ |.... +++.....++|+.|.| |++.|....|
T Consensus 231 s~~~lYF~PGVy~ig~~~~l~L~s-----n~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy 295 (582)
T PF03718_consen 231 SKDTLYFKPGVYWIGSDYHLRLPS-----NTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVY 295 (582)
T ss_dssp SSSEEEE-SEEEEEBCTC-EEE-T-----T--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-T
T ss_pred CcceEEeCCceEEeCCCccEEECC-----CccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeE
Confidence 3579999999999886 78876 5 578887 54332 3333334689999999 9999988766
Q ss_pred ccccccC------CCCCCC-CceEEEEE---eecCeEEEEEEEecCCcceEEEeeee----cEEEEeEEEEcCCCCCCCC
Q 048431 136 WACKTAA------GSNCPN-GATTLSIT---KSNNIRINGLLSLNSQMYHIVINRCQ----DVLVEGAKIIAAGDSPNTD 201 (396)
Q Consensus 136 w~~~~~~------~~~~~~-~p~~i~~~---~~~nv~i~~~~i~~~~~~~i~~~~~~----nv~i~n~~i~~~~~~~~~D 201 (396)
-...... ..+++. .-+++.+. .+.+++++|++|.++|+|.+.+...+ +..|+|.++...++ .++|
T Consensus 296 ~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qtD 374 (582)
T PF03718_consen 296 EADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQTD 374 (582)
T ss_dssp TBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT--
T ss_pred eccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-eccC
Confidence 3211110 001111 12345443 45689999999999999999999544 58999999998776 7999
Q ss_pred CeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCc-e--EEEeeccccCCCCCEEEEEEEeeEEeCCc---
Q 048431 202 GIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGH-G--ISIGSLAKDLDEEGVQNVTVFKTVFTGTT--- 275 (396)
Q Consensus 202 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~-g--i~igs~g~~~~~~~~~ni~i~n~~~~~~~--- 275 (396)
||.+.. +-+|+||+++..||+|-+.. +++.|+||+++..+ | +.+|.. ...+.||+|+|+.+..++
T Consensus 375 Gi~ly~--nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~ 445 (582)
T PF03718_consen 375 GIELYP--NSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIW 445 (582)
T ss_dssp --B--T--T-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SS
T ss_pred CccccC--CCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeec
Confidence 999975 56789999999999998776 69999999998643 3 777764 356899999999999763
Q ss_pred ------cEEEEEee-c---CC-----CCceEEcEEEEeeEeecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEE
Q 048431 276 ------NGLRIKSW-A---RP-----SNGFVRGIRFIDALMQNVQ-HPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIR 339 (396)
Q Consensus 276 ------~gi~i~~~-~---~~-----~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~ 339 (396)
.+|.-.+. . +. ..-.+|+++|+|+++++.- ..+.|...-. ..+..|+|+.|+.+.
T Consensus 446 ~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plqn---------~~nl~ikN~~~~~w~ 516 (582)
T PF03718_consen 446 HNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQN---------YDNLVIKNVHFESWN 516 (582)
T ss_dssp GGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SEE---------EEEEEEEEEEECEET
T ss_pred ccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecCC---------CcceEEEEeeccccc
Confidence 24422221 1 10 1226899999999999864 3455653210 012345555555443
Q ss_pred EeeCCCeeEEEeeC------CCCceecEEEEeEEEEec
Q 048431 340 GTSATPIAIKFDCS------TKYPCKGIRLHNVHLRHL 371 (396)
Q Consensus 340 ~~~~~~~~~~i~~~------~~~~~~ni~~~ni~v~~~ 371 (396)
+..-......+... ......+|.|+|.+|..+
T Consensus 517 ~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 517 GLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp -CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred CcccccceeeccccccccccccccccceEEEeEEECCE
Confidence 33211112223221 122478999999998643
No 17
>PLN02155 polygalacturonase
Probab=99.82 E-value=7.3e-18 Score=164.47 Aligned_cols=198 Identities=17% Similarity=0.206 Sum_probs=155.9
Q ss_pred ceEEEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecC----CcceEEEeeeecEEE
Q 048431 111 NWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNS----QMYHIVINRCQDVLV 186 (396)
Q Consensus 111 ~~i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~----~~~~i~~~~~~nv~i 186 (396)
.++.+.+++|++|+|-++.-+ ..+.+++.+|+||+|++++|.++ ..+++++.+|+||+|
T Consensus 146 ~~i~~~~~~nv~i~gitl~nS-----------------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I 208 (394)
T PLN02155 146 RSISFNSAKDVIISGVKSMNS-----------------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTF 208 (394)
T ss_pred cceeEEEeeeEEEECeEEEcC-----------------CCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEE
Confidence 468888999999999433211 23579999999999999999874 347999999999999
Q ss_pred EeEEEEcCCCCCCCCCeeeec-eeeEEEEecEEecCCceEEeCCC--------CccEEEEeeeEeCC-ceEEEeeccccC
Q 048431 187 EGAKIIAAGDSPNTDGIHVQQ-SRNVIIKSSSIKTGDDCISIGPG--------TNNLWIERVTCGPG-HGISIGSLAKDL 256 (396)
Q Consensus 187 ~n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~~--------~~ni~i~n~~~~~~-~gi~igs~g~~~ 256 (396)
+|++|.+.+ |+|.+.+ |+||+|+||....+ .++++++- .+||+|+||++.+. .|+.|++....
T Consensus 209 ~~~~I~~gD-----DcIaik~gs~nI~I~n~~c~~G-hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~- 281 (394)
T PLN02155 209 TGSTVQTGD-----DCVAIGPGTRNFLITKLACGPG-HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARP- 281 (394)
T ss_pred EeeEEecCC-----ceEEcCCCCceEEEEEEEEECC-ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCC-
Confidence 999999854 6788874 78999999999876 47999882 49999999999865 59999984211
Q ss_pred CCCCEEEEEEEeeEEeCCccEEEEEeecCC---------CCceEEcEEEEeeEeecCC-ccEEEEeecCCCCCCCCCCCc
Q 048431 257 DEEGVQNVTVFKTVFTGTTNGLRIKSWARP---------SNGFVRGIRFIDALMQNVQ-HPIIIDQNYCPHNLNCPGQIS 326 (396)
Q Consensus 257 ~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~---------~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~ 326 (396)
..+.++||+|+|++|.+...++.|.+.+.. ....++||+|+|++..... .++.+... .
T Consensus 282 ~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~------------~ 349 (394)
T PLN02155 282 STGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCS------------K 349 (394)
T ss_pred CCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeC------------C
Confidence 236799999999999999999999865421 1236899999999998763 35455421 2
Q ss_pred ceEEEeEEEEeEEEeeCC
Q 048431 327 GVKISDVIYQDIRGTSAT 344 (396)
Q Consensus 327 ~~~i~nI~~~ni~~~~~~ 344 (396)
..+++||+|+||+++...
T Consensus 350 ~~pc~~I~l~nv~i~~~~ 367 (394)
T PLN02155 350 SSPCTGITLQDIKLTYNK 367 (394)
T ss_pred CCCEEEEEEEeeEEEecC
Confidence 337899999999988653
No 18
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.82 E-value=3e-18 Score=165.02 Aligned_cols=217 Identities=21% Similarity=0.257 Sum_probs=163.7
Q ss_pred cEEEEEeeEEEeeCCccccC----------CCcceEEEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEe
Q 048431 88 SITFLINGTLVAPTDYRVLG----------QANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITK 157 (396)
Q Consensus 88 n~~l~~~G~l~~~~~~~~~~----------~~~~~i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~ 157 (396)
++++.+.|+|.+... ..|. ....++.+.+++|++|+|-++... ..+.+++.+
T Consensus 61 ni~i~G~G~IDG~G~-~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~ns-----------------p~w~~~~~~ 122 (326)
T PF00295_consen 61 NITITGKGTIDGNGQ-AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNS-----------------PFWHIHIND 122 (326)
T ss_dssp EEECTTSSEEE--GG-GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES------------------SSESEEEES
T ss_pred EEEecCCceEcCchh-hhhccccccccccccccceeeeeeecceEEEeeEecCC-----------------CeeEEEEEc
Confidence 566666677765433 1221 113568899999999999444321 124688999
Q ss_pred ecCeEEEEEEEecCC----cceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeecee-eEEEEecEEecCCceEEeCC---
Q 048431 158 SNNIRINGLLSLNSQ----MYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSR-NVIIKSSSIKTGDDCISIGP--- 229 (396)
Q Consensus 158 ~~nv~i~~~~i~~~~----~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~~--- 229 (396)
|+|+++++++|.++. .+++++..|+|++|+|+.|.+.+ |+|.+.+.+ ||+|+||.+..+. ++++++
T Consensus 123 ~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gD-----D~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~ 196 (326)
T PF00295_consen 123 CDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGD-----DCIAIKSGSGNILVENCTCSGGH-GISIGSEGS 196 (326)
T ss_dssp EEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSS-----ESEEESSEECEEEEESEEEESSS-EEEEEEESS
T ss_pred cCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccccc-----CcccccccccceEEEeEEEeccc-cceeeeccC
Confidence 999999999998753 46899999999999999999854 789988655 9999999998754 588875
Q ss_pred C-----CccEEEEeeeEeCC-ceEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCC--------CCceEEcEE
Q 048431 230 G-----TNNLWIERVTCGPG-HGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARP--------SNGFVRGIR 295 (396)
Q Consensus 230 ~-----~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~--------~~g~v~nI~ 295 (396)
+ .+||+|+||++.+. +|+.|++.. ...+.++||+|+|++|.+..+++.|...... ....++||+
T Consensus 197 ~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~ 274 (326)
T PF00295_consen 197 GGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNIT 274 (326)
T ss_dssp SSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEE
T ss_pred CccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEE
Confidence 2 37999999999876 589999852 1246799999999999999899988865321 235799999
Q ss_pred EEeeEeecCC-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEee
Q 048431 296 FIDALMQNVQ-HPIIIDQNYCPHNLNCPGQISGVKISDVIYQDIRGTS 342 (396)
Q Consensus 296 ~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~ 342 (396)
|+||+..... .++.+... +..+++||+|+||.++.
T Consensus 275 ~~nitg~~~~~~~i~i~~~------------~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 275 FRNITGTSAGSSAISIDCS------------PGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEEEEEESTSEEEEEE-B------------TTSSEEEEEEEEEEEES
T ss_pred EEeeEEEeccceEEEEEEC------------CcCcEEeEEEEeEEEEc
Confidence 9999998776 55655432 22369999999999997
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.71 E-value=9e-15 Score=139.81 Aligned_cols=190 Identities=22% Similarity=0.265 Sum_probs=99.6
Q ss_pred HHHHHHHHhhcCCCcEEEecCceEEE-eceeecccCCCCcEEEEEee---E-EEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 50 FAKAWAAACASNESATIYVPKGRYLL-GSVAFRSECKSPSITFLING---T-LVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 50 iq~Ai~~a~~~~~g~~v~iP~G~Y~~-~~l~l~~~~~~~n~~l~~~G---~-l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
||+|+++| ++|++|+||+|+|.+ +++.+.. + +++|.++| + |.+..... .+..+.. .+++|+|+
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~~---~-~Iti~G~g~~~tvid~~~~~~----~~~~i~v-~a~~VtI~ 68 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLDA---D-GVTIRGAGMDETILDFSGQVG----GAEGLLV-TSDDVTLS 68 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEeC---C-CeEEEecCCCccEEecccCCC----CCceEEE-EeCCeEEE
Confidence 69999877 789999999999986 5677753 2 77777765 2 22211100 0112222 24555555
Q ss_pred ceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEe-------cCCcceEEEeeeecEEEEeEEEEcCCCC
Q 048431 125 GGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSL-------NSQMYHIVINRCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~-------~~~~~~i~~~~~~nv~i~n~~i~~~~~~ 197 (396)
|-++...+ ...|.+..+++++|+++++. ....+++.+..|++++|+++++....
T Consensus 69 ~ltI~~~~-----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~-- 129 (314)
T TIGR03805 69 DLAVENTK-----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGAS-- 129 (314)
T ss_pred eeEEEcCC-----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCC--
Confidence 52222111 11455555566666665554 11235555666666666666665421
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC-ceEEEeeccccCCCCCEEEEEEEeeEEeCC
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG-HGISIGSLAKDLDEEGVQNVTVFKTVFTGT 274 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 274 (396)
.+||.+..|++++|+|+++.....||.+.. +.++.|+++.+... .|+.+.+...- .....++++|+++++.+.
T Consensus 130 --d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 130 --DAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred --cccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceEEECCEEECC
Confidence 135555555666666666655555555554 45555555555432 34444221100 012335556666665543
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=1e-11 Score=124.41 Aligned_cols=154 Identities=23% Similarity=0.309 Sum_probs=127.3
Q ss_pred CcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCC----ceEEeCCCCccEEEEeeeEeCCc-e
Q 048431 172 QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGD----DCISIGPGTNNLWIERVTCGPGH-G 246 (396)
Q Consensus 172 ~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d----D~i~i~~~~~ni~i~n~~~~~~~-g 246 (396)
+...+.+..|+||++++++|.+++. .++|+..|++++++|.+|.+.+ |++.+.+ |+|++|++|++..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 4457889999999999999998642 6899999999999999998754 5999988 999999999999876 4
Q ss_pred EEEeeccccC---CCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCCccEEEEeecCCCCCCCCC
Q 048431 247 ISIGSLAKDL---DEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLNCPG 323 (396)
Q Consensus 247 i~igs~g~~~---~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~ 323 (396)
+++++-.... .....++|.|+||.|.....++.+.++ .+|.|+||++||+.|.+..+++.|+....
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~~~~d~GLRikt~~~-------- 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVMDNTDRGLRIKTNDG-------- 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee---cCCceeEEEEEeeeeccCcceeeeeeecc--------
Confidence 9997742221 123479999999999988778888887 46889999999999999999999998643
Q ss_pred CCcceEEEeEEEEeEEEeeC
Q 048431 324 QISGVKISDVIYQDIRGTSA 343 (396)
Q Consensus 324 ~~~~~~i~nI~~~ni~~~~~ 343 (396)
.++.++||+|+++.....
T Consensus 381 --~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 --RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred --cceeEEEEEEecccccCc
Confidence 336889999998887654
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.29 E-value=1.8e-10 Score=110.36 Aligned_cols=163 Identities=22% Similarity=0.357 Sum_probs=124.0
Q ss_pred eeeEEEEc-e----EEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEE
Q 048431 118 VSHVSIIG-G----ALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKII 192 (396)
Q Consensus 118 ~~nv~I~G-g----~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~ 192 (396)
.++++|+| | +||+.++. .....+ ...+++|+|+++++.++..+++.+..|++++|+++++.
T Consensus 31 ~~~Iti~G~g~~~tvid~~~~~-------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~ 96 (314)
T TIGR03805 31 ADGVTIRGAGMDETILDFSGQV-------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVE 96 (314)
T ss_pred CCCeEEEecCCCccEEecccCC-------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEE
Confidence 36788888 4 47766541 012234 44689999999999999999999999999999999998
Q ss_pred cCCC---CCCCCCeeeeceeeEEEEecEEecC-CceEEeCCCCccEEEEeeeEeCC-ceEEEeeccccCCCCCEEEEEEE
Q 048431 193 AAGD---SPNTDGIHVQQSRNVIIKSSSIKTG-DDCISIGPGTNNLWIERVTCGPG-HGISIGSLAKDLDEEGVQNVTVF 267 (396)
Q Consensus 193 ~~~~---~~~~DGi~~~~s~nv~I~n~~i~~~-dD~i~i~~~~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~ 267 (396)
.... ....+||.+..|++++|++|+++.. |++|.++. +++++|++|++... .|+.+.. ..++.|+
T Consensus 97 ~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~ 166 (314)
T TIGR03805 97 WTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVY 166 (314)
T ss_pred eccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEE
Confidence 4321 1357899999999999999999985 45899887 89999999999865 4777742 2478999
Q ss_pred eeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 268 KTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 268 n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
++++.+...|+.+...++.....-+++++++.++.+.
T Consensus 167 ~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 167 NNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred CCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 9999998889988665432223346677777666544
No 22
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=99.05 E-value=3e-08 Score=90.17 Aligned_cols=233 Identities=17% Similarity=0.265 Sum_probs=138.7
Q ss_pred ccccccccccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCceE---EEeceeecccCCCCcEEEEEeeE
Q 048431 20 NLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGRY---LLGSVAFRSECKSPSITFLINGT 96 (396)
Q Consensus 20 ~~~~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y---~~~~l~l~~~~~~~n~~l~~~G~ 96 (396)
+.+.+..+..++++.||-.+ |=-++|.+|+.+ +.||++|+|-- .-..+.++. .-||.+.|.
T Consensus 24 p~~ra~~~~~~vni~dy~~~-----dwiasfkqaf~e------~qtvvvpagl~cenint~ifip~-----gktl~v~g~ 87 (464)
T PRK10123 24 PFARALPARQSVNINDYNPH-----DWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIPP-----GKTLHILGS 87 (464)
T ss_pred HhhhhcCCCceeehhhcCcc-----cHHHHHHHHhcc------CcEEEecCccEecccccceEeCC-----CCeEEEEEE
Confidence 34445556789999999843 567889999943 68999999953 234677764 789999998
Q ss_pred EEeeCCccccCCCcceEEEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEE-eecCeEEEEEEEecC-Ccc
Q 048431 97 LVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSIT-KSNNIRINGLLSLNS-QMY 174 (396)
Q Consensus 97 l~~~~~~~~~~~~~~~i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~-~~~nv~i~~~~i~~~-~~~ 174 (396)
+.+... +.++.-.|| .+.| .+. .+-+.+.+. ..++.+|+++.+..- |..
T Consensus 88 l~gngr-------grfvlqdg~---qv~g-----e~~--------------g~~hnitldvrgsdc~ikgiamsgfgpvt 138 (464)
T PRK10123 88 LRGNGR-------GRFVLQDGS---QVTG-----EEG--------------GSMHNITLDVRGSDCTIKGLAMSGFGPVT 138 (464)
T ss_pred eecCCc-------eeEEEecCC---Eeec-----CCC--------------ceeeeEEEeeccCceEEeeeeecccCcee
Confidence 876543 223332232 2333 000 011112221 235667777777543 334
Q ss_pred eEEEeee-----ecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEec-CCceEEeCC--CCccEEEE-----eeeE
Q 048431 175 HIVINRC-----QDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKT-GDDCISIGP--GTNNLWIE-----RVTC 241 (396)
Q Consensus 175 ~i~~~~~-----~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~--~~~ni~i~-----n~~~ 241 (396)
.+.+..- +|++|+++++....++--..|+|-+- +.+.|.||.+.. ..|+|...- +-+|++|+ ++.|
T Consensus 139 qiyiggk~prvmrnl~id~itv~~anyailrqgfhnq~-dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inc 217 (464)
T PRK10123 139 QIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQI-IGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINC 217 (464)
T ss_pred EEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhcc-ccceeeccccccccCceEEEEEEecccceeeehheheeecc
Confidence 4555432 57888888888655444445555433 567888888876 456664432 23555554 4455
Q ss_pred eCC---ceEEEeeccc-----cCCCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEe
Q 048431 242 GPG---HGISIGSLAK-----DLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALM 301 (396)
Q Consensus 242 ~~~---~gi~igs~g~-----~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~ 301 (396)
.++ +|+.||-.|. |++...++|..+.|++-.++..-+.+.. | ..-.+|||..+||+-
T Consensus 218 tngkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhven--g-khfvirnvkaknitp 282 (464)
T PRK10123 218 TNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVEN--G-KHFVIRNIKAKNITP 282 (464)
T ss_pred cCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecC--C-cEEEEEeeeccccCC
Confidence 554 5777765554 2334568899999988777766555542 2 333456666666653
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.84 E-value=6.7e-08 Score=87.21 Aligned_cols=124 Identities=15% Similarity=0.198 Sum_probs=85.9
Q ss_pred EEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEcCCCCC-----CCCCee------eeceeeEEEEecEEecCCc
Q 048431 155 ITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSP-----NTDGIH------VQQSRNVIIKSSSIKTGDD 223 (396)
Q Consensus 155 ~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~-----~~DGi~------~~~s~nv~I~n~~i~~~dD 223 (396)
|+.|++++++++++.+++-. +..|++++++|+.+.+..... .-|++. +++++||.|+|+.+.+.|
T Consensus 94 fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD- 169 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD- 169 (277)
T ss_pred hhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc-
Confidence 66788999999998777543 236778888888885422111 122333 356899999999998876
Q ss_pred eEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeec
Q 048431 224 CISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQN 303 (396)
Q Consensus 224 ~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~ 303 (396)
+++. ++||+|.++.+. |=.+|. ..+|+++-||++.+.+ +.-+++|++.+|++|.+
T Consensus 170 --AFWn-~eNVtVyDS~i~---GEYLgW--------~SkNltliNC~I~g~Q-----------pLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 170 --AFWN-CENVTVYDSVIN---GEYLGW--------NSKNLTLINCTIEGTQ-----------PLCYCDNLVLENCTMID 224 (277)
T ss_pred --cccc-CCceEEEcceEe---eeEEEE--------EcCCeEEEEeEEeccC-----------ccEeecceEEeCcEeec
Confidence 3445 889999999884 423322 3479999999987762 34578889999999987
Q ss_pred CCcc
Q 048431 304 VQHP 307 (396)
Q Consensus 304 ~~~~ 307 (396)
...+
T Consensus 225 tdla 228 (277)
T PF12541_consen 225 TDLA 228 (277)
T ss_pred ceee
Confidence 6543
No 24
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.81 E-value=9.9e-08 Score=86.14 Aligned_cols=138 Identities=17% Similarity=0.248 Sum_probs=95.0
Q ss_pred EeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEcC
Q 048431 115 FEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAA 194 (396)
Q Consensus 115 ~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~~ 194 (396)
+..+++++|++-.+.-.....|....-.-++.. ...--.+.+++|+.++++.+.. ...+++|+||.|+|.++.+.
T Consensus 94 fR~~~~i~L~nv~~~~A~Et~W~c~~i~l~nv~-~~gdYf~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~sK 168 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADETLWNCRGIKLKNVQ-ANGDYFFMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDSK 168 (277)
T ss_pred hhcccCcEEEeeEeCCCcccCEEeCCeEEEeEE-EeceEeeeeccceEEeceEEeC----CEEeeceeeEEEEccEEecc
Confidence 445778888775553444556654321000000 0112345677888888888743 35678999999999999985
Q ss_pred CCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCCCCEEEEEEEeeEEeCC
Q 048431 195 GDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTGT 274 (396)
Q Consensus 195 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 274 (396)
+ .++.|+||+|.|++|.. =.++=.++|+++-||++.+.+|+- +++|++.+||+|.++
T Consensus 169 D--------AFWn~eNVtVyDS~i~G----EYLgW~SkNltliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~t 225 (277)
T PF12541_consen 169 D--------AFWNCENVTVYDSVING----EYLGWNSKNLTLINCTIEGTQPLC-----------YCDNLVLENCTMIDT 225 (277)
T ss_pred c--------ccccCCceEEEcceEee----eEEEEEcCCeEEEEeEEeccCccE-----------eecceEEeCcEeecc
Confidence 3 36889999999999984 223223799999999998766643 568999999999988
Q ss_pred ccEEEE
Q 048431 275 TNGLRI 280 (396)
Q Consensus 275 ~~gi~i 280 (396)
+-++.-
T Consensus 226 dlaFEy 231 (277)
T PF12541_consen 226 DLAFEY 231 (277)
T ss_pred eeeeee
Confidence 766533
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.65 E-value=2.9e-07 Score=78.55 Aligned_cols=139 Identities=21% Similarity=0.284 Sum_probs=97.0
Q ss_pred EEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCC
Q 048431 152 TLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGT 231 (396)
Q Consensus 152 ~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~ 231 (396)
.|.+....+++|++++|.+...+++.+..+..++|++++|.. ...|+.+....++++++|.+.....++.+. +.
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 356677788999999999999999999999999999999997 457899998899999999999877777777 48
Q ss_pred ccEEEEeeeEeCCc--eEEEeeccccCCCCCEEEEEEEeeEEeCCc-cEEEEEeecCCCCceEEcEEEEeeEeecCC-cc
Q 048431 232 NNLWIERVTCGPGH--GISIGSLAKDLDEEGVQNVTVFKTVFTGTT-NGLRIKSWARPSNGFVRGIRFIDALMQNVQ-HP 307 (396)
Q Consensus 232 ~ni~i~n~~~~~~~--gi~igs~g~~~~~~~~~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~-~~ 307 (396)
.+++|++|.+.... |+.+.. ...+++|++|+|.+.. .|+.+.... -.++++++.++.+.. .+
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~g 141 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNG 141 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCccee
Confidence 89999999998653 676632 1357899999999976 788777532 235667777776654 44
Q ss_pred EEE
Q 048431 308 III 310 (396)
Q Consensus 308 i~i 310 (396)
+.+
T Consensus 142 i~~ 144 (158)
T PF13229_consen 142 IYL 144 (158)
T ss_dssp EE-
T ss_pred EEE
Confidence 444
No 26
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.61 E-value=1.8e-06 Score=84.42 Aligned_cols=141 Identities=20% Similarity=0.155 Sum_probs=93.7
Q ss_pred EEEEEeecCeEEEEEEEecCC------cceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEec-CCce
Q 048431 152 TLSITKSNNIRINGLLSLNSQ------MYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKT-GDDC 224 (396)
Q Consensus 152 ~i~~~~~~nv~i~~~~i~~~~------~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~ 224 (396)
++.-...++|+|++++|+++. ..++++..|++++|++++|.++. .-||.+..|+ ..|.++.|.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 566677899999999999864 34788899999999999999742 3578888877 5555555543 4555
Q ss_pred EEeCCCCccEEEEeeeEeCCc--eEEEeec------------------------cccCCC---CCEEEEEEEeeEEeCCc
Q 048431 225 ISIGPGTNNLWIERVTCGPGH--GISIGSL------------------------AKDLDE---EGVQNVTVFKTVFTGTT 275 (396)
Q Consensus 225 i~i~~~~~ni~i~n~~~~~~~--gi~igs~------------------------g~~~~~---~~~~ni~i~n~~~~~~~ 275 (396)
|.++. +++++|+++++.... ||.+... ++++.. ....+++|+++++.+++
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 66655 677777777776432 3444322 111110 22457888899988888
Q ss_pred -cEEEEEeecCCCCceEEcEEEEeeEeecCCc
Q 048431 276 -NGLRIKSWARPSNGFVRGIRFIDALMQNVQH 306 (396)
Q Consensus 276 -~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~ 306 (396)
.|+++.+.. |+.|++.++++..+
T Consensus 262 ~dgI~~nsss--------~~~i~~N~~~~~R~ 285 (455)
T TIGR03808 262 YSAVRGNSAS--------NIQITGNSVSDVRE 285 (455)
T ss_pred cceEEEEccc--------CcEEECcEeeeeee
Confidence 888887642 34444444444444
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.57 E-value=3.4e-06 Score=77.67 Aligned_cols=127 Identities=22% Similarity=0.198 Sum_probs=102.5
Q ss_pred EEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCC
Q 048431 152 TLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGT 231 (396)
Q Consensus 152 ~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~ 231 (396)
.+.+..+.+++|++.++.+. .+++++..+++.+|+++++.. +..||.+..+.+.+|+++.+.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 56888999999999999988 789999999999999999997 3489999988878999999998877998887 7
Q ss_pred ccEEEEeeeEeCC-ceEEEeeccccCCCCCEEEEEEEeeEEeCC-ccEEEEEeecCCCCceEEcEEE
Q 048431 232 NNLWIERVTCGPG-HGISIGSLAKDLDEEGVQNVTVFKTVFTGT-TNGLRIKSWARPSNGFVRGIRF 296 (396)
Q Consensus 232 ~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~-~~gi~i~~~~~~~~g~v~nI~~ 296 (396)
.+.+|+++++... .||.+... .+.+|++++|.+. ..|+.+... .....|.+-.|
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~~~~--s~~n~I~~N~f 165 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYFLSG--SSGNTIYNNNF 165 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEEecc--CCCCEEECCCc
Confidence 7788999988743 57877432 5778889999988 888883322 24456666666
No 28
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.56 E-value=8.7e-06 Score=74.51 Aligned_cols=106 Identities=21% Similarity=0.301 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEecCceEEEe-----ceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEE
Q 048431 48 QAFAKAWAAACASNESATIYVPKGRYLLG-----SVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVS 122 (396)
Q Consensus 48 ~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~-----~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~ 122 (396)
+-|++|++.| ++|.+|++-||+|.-. +|.++. .++|.++..-+. ..++.
T Consensus 16 ~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i~~-----gVtl~G~~~~kG------------------~~~il 69 (246)
T PF07602_consen 16 KTITKALQAA---QPGDTIQLAPGTYSEATGETFPIIIKP-----GVTLIGNESNKG------------------QIDIL 69 (246)
T ss_pred HHHHHHHHhC---CCCCEEEECCceeccccCCcccEEecC-----CeEEeecccCCC------------------cceEE
Confidence 6799999876 7899999999999643 466764 788877642111 11233
Q ss_pred EEc-e---EEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecC---CcceEEEeeeecEEEEeEEEEc
Q 048431 123 IIG-G---ALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNS---QMYHIVINRCQDVLVEGAKIIA 193 (396)
Q Consensus 123 I~G-g---~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~---~~~~i~~~~~~nv~i~n~~i~~ 193 (396)
+.| + +++|.+.. .. .+.+.+....+.+|+++++.++ ...++.+.++ +.+|+|++|..
T Consensus 70 ~~g~~~~~~I~g~~~~-----------~~--~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~ 133 (246)
T PF07602_consen 70 ITGGGTGPTISGGGPD-----------LS--GQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTN 133 (246)
T ss_pred ecCCceEEeEeccCcc-----------cc--ceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEEC
Confidence 332 1 23333320 00 2245556667777777777776 2334555444 56666666654
No 29
>PLN02480 Probable pectinesterase
Probab=98.52 E-value=3.5e-05 Score=74.17 Aligned_cols=198 Identities=15% Similarity=0.109 Sum_probs=111.1
Q ss_pred ccHHHHHHHHHHHhhcCCCc----EEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceee
Q 048431 45 DSTQAFAKAWAAACASNESA----TIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSH 120 (396)
Q Consensus 45 d~t~aiq~Ai~~a~~~~~g~----~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 120 (396)
.|-..||+||+++ +.+. +|+|.+|+|. ..+.++.. |. +++|.++|. +.
T Consensus 58 g~f~TIQ~AIdaa---p~~~~~~~~I~Ik~GvY~-E~V~I~~~-kp-~ItL~G~g~----------------------~~ 109 (343)
T PLN02480 58 GDFTSVQSAIDAV---PVGNSEWIIVHLRKGVYR-EKVHIPEN-KP-FIFMRGNGK----------------------GR 109 (343)
T ss_pred CCcccHHHHHhhC---ccCCCceEEEEEcCcEEE-EEEEECCC-Cc-eEEEEecCC----------------------CC
Confidence 4678899999876 3344 4889999998 55556420 12 677776651 11
Q ss_pred EEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCC---------cceEEE-eeeecEEEEeEE
Q 048431 121 VSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQ---------MYHIVI-NRCQDVLVEGAK 190 (396)
Q Consensus 121 v~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~---------~~~i~~-~~~~nv~i~n~~ 190 (396)
..|.+ +... . .. ... .......++++++|++|+|.. ...+.+ ...+++.+.||+
T Consensus 110 TvI~~-----~~~~----~----~~--~~s-aTvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~ 173 (343)
T PLN02480 110 TSIVW-----SQSS----S----DN--AAS-ATFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCA 173 (343)
T ss_pred eEEEc-----cccc----c----CC--CCc-eEEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeE
Confidence 11211 1000 0 00 011 222334678888888888872 134444 357888888888
Q ss_pred EEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC-------ce-EEEeeccccCCCCCEE
Q 048431 191 IIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG-------HG-ISIGSLAKDLDEEGVQ 262 (396)
Q Consensus 191 i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-------~g-i~igs~g~~~~~~~~~ 262 (396)
|.+..| -+.. ...+-.++||.|...=|-|. |.-...+++|.+..- .| |.-.+. ....-.
T Consensus 174 f~G~QD-----TLy~-~~gR~yf~~C~IeG~VDFIF---G~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r----~~~~~~ 240 (343)
T PLN02480 174 FYSTHN-----TLFD-YKGRHYYHSCYIQGSIDFIF---GRGRSIFHNCEIFVIADRRVKIYGSITAHNR----ESEDNS 240 (343)
T ss_pred Eecccc-----eeEe-CCCCEEEEeCEEEeeeeEEc---cceeEEEEccEEEEecCCCCCCceEEEcCCC----CCCCCC
Confidence 887433 2221 22456788888887545442 234788888887531 23 322221 112334
Q ss_pred EEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 263 NVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 263 ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
...|.||++.+.. ...+. +.-+....++|.|..|.+.
T Consensus 241 GfvF~~C~i~g~g-~~yLG----RPW~~ya~vVf~~t~l~~~ 277 (343)
T PLN02480 241 GFVFIKGKVYGIG-EVYLG----RAKGAYSRVIFAKTYLSKT 277 (343)
T ss_pred EEEEECCEEcccC-ceeee----cCCCCcceEEEEecccCCe
Confidence 6788888887642 22332 2334466777888777653
No 30
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.52 E-value=1.4e-05 Score=78.22 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHhhcCCCcEEEecCceEEEeceee
Q 048431 46 STQAFAKAWAAACASNESATIYVPKGRYLLGSVAF 80 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l 80 (396)
+.++||+||++| .+|++|+++.|+|.-..|.+
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~ 34 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVF 34 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEE
Confidence 568999999877 78999999999997434444
No 31
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=6.6e-06 Score=75.74 Aligned_cols=102 Identities=19% Similarity=0.252 Sum_probs=75.3
Q ss_pred cceEEEeeeecEEEEeEEEEcCCC-CCCCCCeee-eceeeEEEEecEEec---------CCceEEeCCCCccEEEEeeeE
Q 048431 173 MYHIVINRCQDVLVEGAKIIAAGD-SPNTDGIHV-QQSRNVIIKSSSIKT---------GDDCISIGPGTNNLWIERVTC 241 (396)
Q Consensus 173 ~~~i~~~~~~nv~i~n~~i~~~~~-~~~~DGi~~-~~s~nv~I~n~~i~~---------~dD~i~i~~~~~ni~i~n~~~ 241 (396)
.|++.+.+.+||.|+|++|+.... -++-|+|.+ ..++|++|++|++.. +|..+.++.++..|+|++|.+
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~f 195 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKF 195 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeee
Confidence 466666667788888888876431 134588988 678999999999976 455678888899999999999
Q ss_pred eCCc-eEEEeeccccCCCCCEEEEEEEeeEEeCC
Q 048431 242 GPGH-GISIGSLAKDLDEEGVQNVTVFKTVFTGT 274 (396)
Q Consensus 242 ~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 274 (396)
...+ ++-+|+........+-.+|++++|.|.+.
T Consensus 196 hdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 196 HDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred ecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 8654 57777754322234567899999999885
No 32
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=7.7e-06 Score=75.32 Aligned_cols=172 Identities=18% Similarity=0.281 Sum_probs=114.3
Q ss_pred EEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEEc-e---EEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEE
Q 048431 89 ITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIG-G---ALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRIN 164 (396)
Q Consensus 89 ~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-g---~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~ 164 (396)
+.|.+.|+|..+. ++ +..+++..+.|.+|.| | ++.| ..+.++...||.|+
T Consensus 77 ~ii~v~Gti~~s~-ps-----~~k~~iki~sNkTivG~g~~a~~~g--------------------~gl~i~~a~NVIir 130 (345)
T COG3866 77 VIIVVKGTITAST-PS-----DKKITIKIGSNKTIVGSGADATLVG--------------------GGLKIRDAGNVIIR 130 (345)
T ss_pred EEEEEcceEeccC-CC-----CceEEEeeccccEEEeeccccEEEe--------------------ceEEEEeCCcEEEE
Confidence 3566777776652 11 1237777889999998 4 3333 25677888999999
Q ss_pred EEEEecCC-----cceEEE-eeeecEEEEeEEEEcCCC---CCCCCCe-eee-ceeeEEEEecEEecCCceEEeCCC---
Q 048431 165 GLLSLNSQ-----MYHIVI-NRCQDVLVEGAKIIAAGD---SPNTDGI-HVQ-QSRNVIIKSSSIKTGDDCISIGPG--- 230 (396)
Q Consensus 165 ~~~i~~~~-----~~~i~~-~~~~nv~i~n~~i~~~~~---~~~~DGi-~~~-~s~nv~I~n~~i~~~dD~i~i~~~--- 230 (396)
+++|...+ ...|.+ .+.+|+.|++|++..... ..-.||. ++. .+.+|+|.+|.+...+-+.-+++.
T Consensus 131 Nltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~ 210 (345)
T COG3866 131 NLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSS 210 (345)
T ss_pred eeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcc
Confidence 99998776 567888 788999999999997432 1234554 343 478899999999987777766652
Q ss_pred -----CccEEEEeeeEeCC--c--eEEEeeccccCCCCCEEEEEEEeeEEeCCc-cEEEEEeecCCCCceEEcEEEEee
Q 048431 231 -----TNNLWIERVTCGPG--H--GISIGSLAKDLDEEGVQNVTVFKTVFTGTT-NGLRIKSWARPSNGFVRGIRFIDA 299 (396)
Q Consensus 231 -----~~ni~i~n~~~~~~--~--gi~igs~g~~~~~~~~~ni~i~n~~~~~~~-~gi~i~~~~~~~~g~v~nI~~~ni 299 (396)
-.+|++.+|.+.+. + -+++|. +++.|+.+.... .|+.+..-. ...-++++..|++.
T Consensus 211 ~~~~~~~kvT~hhNyFkn~~qR~PriRfG~------------vHvyNNYy~~~~~~g~a~~iG~-~AkiyvE~NyF~~~ 276 (345)
T COG3866 211 NYDDGKYKVTIHHNYFKNLYQRGPRIRFGM------------VHVYNNYYEGNPKFGVAITIGT-SAKIYVENNYFENG 276 (345)
T ss_pred cccCCceeEEEeccccccccccCCceEeeE------------EEEeccccccCcccceEEeecc-ceEEEEecceeccC
Confidence 24599999998753 2 266654 477777777533 444433210 02235566666664
No 33
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.43 E-value=6.5e-06 Score=81.51 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=101.3
Q ss_pred EEEeeeecEEEEeEEEEcCCCCCCCCCeeeecee----eEEEEecEEec----CCceEEeCCCCccEEEEeeeEeCCc-e
Q 048431 176 IVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSR----NVIIKSSSIKT----GDDCISIGPGTNNLWIERVTCGPGH-G 246 (396)
Q Consensus 176 i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~----nv~I~n~~i~~----~dD~i~i~~~~~ni~i~n~~~~~~~-g 246 (396)
.....+++..+++++|..+.. ..+++...+ +..|+|...-. +.||+.+.. +-+|+||++...+ +
T Consensus 323 ~~~~g~q~~~~~GiTI~~pP~----~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~---nS~i~dcF~h~nDD~ 395 (582)
T PF03718_consen 323 ISANGGQTLTCEGITINDPPF----HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP---NSTIRDCFIHVNDDA 395 (582)
T ss_dssp CS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B--T---T-EEEEEEEEESS-S
T ss_pred hccCCcceEEEEeeEecCCCc----ceEEecCCccccccceeeceeeeeeEEeccCCccccC---CCeeeeeEEEecCch
Confidence 345677899999999998643 346666433 47888888764 578998876 7789999998654 5
Q ss_pred EEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCC---------ccEEEE-eecCC
Q 048431 247 ISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQ---------HPIIID-QNYCP 316 (396)
Q Consensus 247 i~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~---------~~i~i~-~~~~~ 316 (396)
|.+.. .++.++|+++....+|--|.. .- ....++||+|+|+.+--.. .+|.-. .+|.+
T Consensus 396 iKlYh----------S~v~v~~~ViWk~~Ngpiiq~-GW-~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~ 463 (582)
T PF03718_consen 396 IKLYH----------SNVSVSNTVIWKNENGPIIQW-GW-TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDD 463 (582)
T ss_dssp EE--S----------TTEEEEEEEEEE-SSS-SEE---C-S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS
T ss_pred hheee----------cCcceeeeEEEecCCCCeEEe-ec-cccccCceEEeeeEEEeeeeecccCCCCceeEeccccccc
Confidence 87632 488999999999777654432 11 3456999999999986432 233332 34422
Q ss_pred CCCCCCCCCcceEEEeEEEEeEEEeeCCCeeEEEeeCCCCceecEEEEeEEEE
Q 048431 317 HNLNCPGQISGVKISDVIYQDIRGTSATPIAIKFDCSTKYPCKGIRLHNVHLR 369 (396)
Q Consensus 317 ~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~~~ni~v~ 369 (396)
.... ....+..+|++++|+|++.++.....+.| .|...-+|+.++|+.+.
T Consensus 464 ~~s~-~~adp~~ti~~~~~~nv~~EG~~~~l~ri--~plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 464 MAST-KTADPSTTIRNMTFSNVRCEGMCPCLFRI--YPLQNYDNLVIKNVHFE 513 (582)
T ss_dssp -SSS---BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEEC
T ss_pred ccCC-CCCCcccceeeEEEEeEEEecccceeEEE--eecCCCcceEEEEeecc
Confidence 1111 22234568999999999999876444445 55567788889999887
No 34
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.41 E-value=2.7e-06 Score=72.44 Aligned_cols=139 Identities=27% Similarity=0.349 Sum_probs=93.1
Q ss_pred EEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEc
Q 048431 114 SFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIA 193 (396)
Q Consensus 114 ~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~ 193 (396)
.+.+..+++|++..+...+ ...|.+.....++|++.++.+ ...++.+....+++++++.+..
T Consensus 4 ~i~~~~~~~i~~~~i~~~~-----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~ 65 (158)
T PF13229_consen 4 SINNGSNVTIRNCTISNNG-----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISD 65 (158)
T ss_dssp EETTCEC-EEESEEEESSS-----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES
T ss_pred EEECCcCeEEeeeEEEeCC-----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEE
Confidence 4445666777775554431 336888888889999999999 7788999999999999999997
Q ss_pred CCCCCCCCCeeeeceeeEEEEecEEecCCc-eEEeCCCCccEEEEeeeEeCC--ceEEEeeccccCCCCCEEEEEEEeeE
Q 048431 194 AGDSPNTDGIHVQQSRNVIIKSSSIKTGDD-CISIGPGTNNLWIERVTCGPG--HGISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 194 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD-~i~i~~~~~ni~i~n~~~~~~--~gi~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
.. .|+.+..+.+++|++|.+....+ ++.+....++++|++|++... .|+.+... .-.+++|++|+
T Consensus 66 ~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~ 133 (158)
T PF13229_consen 66 NG-----SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNT 133 (158)
T ss_dssp -S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEE
T ss_pred cc-----ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEE
Confidence 42 67888888999999999988654 888874267899999999854 46776443 12478899999
Q ss_pred EeCCc-cEEEEEe
Q 048431 271 FTGTT-NGLRIKS 282 (396)
Q Consensus 271 ~~~~~-~gi~i~~ 282 (396)
+.+.. .|+.+..
T Consensus 134 i~~~~~~gi~~~~ 146 (158)
T PF13229_consen 134 ISNNGGNGIYLIS 146 (158)
T ss_dssp EECESSEEEE-TT
T ss_pred EEeCcceeEEEEC
Confidence 99865 6776653
No 35
>smart00656 Amb_all Amb_all domain.
Probab=98.41 E-value=1.3e-05 Score=71.21 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=76.1
Q ss_pred ceEEEeeeecEEEEeEEEEcCCC--CCCCCCeeeeceeeEEEEecEEecC----------CceEEeCCCCccEEEEeeeE
Q 048431 174 YHIVINRCQDVLVEGAKIIAAGD--SPNTDGIHVQQSRNVIIKSSSIKTG----------DDCISIGPGTNNLWIERVTC 241 (396)
Q Consensus 174 ~~i~~~~~~nv~i~n~~i~~~~~--~~~~DGi~~~~s~nv~I~n~~i~~~----------dD~i~i~~~~~ni~i~n~~~ 241 (396)
.++.+..++||.|+|++|+.... ....|+|.+..+++|.|+.|.+..+ |..+.++.++.++++++|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 45666667899999999997543 2467999999999999999999986 45567888899999999999
Q ss_pred eCCc-eEEEeeccccCCCCCEEEEEEEeeEEeCC
Q 048431 242 GPGH-GISIGSLAKDLDEEGVQNVTVFKTVFTGT 274 (396)
Q Consensus 242 ~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 274 (396)
...+ +.-+|+..... .....+|++.++.+.++
T Consensus 112 ~~h~~~~liG~~d~~~-~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 112 HNHWKVMLLGHSDSDT-DDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ecCCEEEEEccCCCcc-ccccceEEEECcEEcCc
Confidence 7544 57777642221 12255899999999774
No 36
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.41 E-value=6.8e-05 Score=70.15 Aligned_cols=155 Identities=18% Similarity=0.241 Sum_probs=101.6
Q ss_pred CCCcEEEecCceEEEeceeecccCCCCcEEEEEe-e-EEEeeCCccccCCCcceEEEeceeeEEEEceEEeCCCCCcccc
Q 048431 61 NESATIYVPKGRYLLGSVAFRSECKSPSITFLIN-G-TLVAPTDYRVLGQANNWLSFEGVSHVSIIGGALDAKGTSLWAC 138 (396)
Q Consensus 61 ~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~-G-~l~~~~~~~~~~~~~~~i~~~~~~nv~I~Gg~idg~g~~~w~~ 138 (396)
.+|+.+-|. |+|. +.+.+-. -++|.++ | ++..... +..+++. ..++.|+|-+..++|......
T Consensus 32 ~pgd~~~i~-g~~~-g~~vInr-----~l~l~ge~ga~l~g~g~-------G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m 96 (408)
T COG3420 32 KPGDYYGIS-GRYA-GNFVINR-----ALTLRGENGAVLDGGGK-------GSYVTVA-APDVIVEGLTVRGSGRSLPAM 96 (408)
T ss_pred CCCcEEEEe-eeec-ccEEEcc-----ceeeccccccEEecCCc-------ccEEEEe-CCCceeeeEEEecCCCCcccc
Confidence 578888888 7763 2222210 2344333 2 2222111 3456665 788999997777776521110
Q ss_pred cccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEcCCC---CCCCCCeeeeceeeEEEEe
Q 048431 139 KTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGD---SPNTDGIHVQQSRNVIIKS 215 (396)
Q Consensus 139 ~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~---~~~~DGi~~~~s~nv~I~n 215 (396)
..-.+.-...+.-.|+...+... .+++.+..+.++.|++.+|....+ .....||+++.+++..|..
T Consensus 97 ----------~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ 165 (408)
T COG3420 97 ----------DAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVG 165 (408)
T ss_pred ----------cceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEc
Confidence 11122233445666676666654 378999999999999999997554 2467899999999999999
Q ss_pred cEEecCCceEEeCCCCccEEEEeeeEe
Q 048431 216 SSIKTGDDCISIGPGTNNLWIERVTCG 242 (396)
Q Consensus 216 ~~i~~~dD~i~i~~~~~ni~i~n~~~~ 242 (396)
..|.-+.|||.... +++-.|+++.+.
T Consensus 166 ndisy~rDgIy~~~-S~~~~~~gnr~~ 191 (408)
T COG3420 166 NDISYGRDGIYSDT-SQHNVFKGNRFR 191 (408)
T ss_pred CccccccceEEEcc-cccceecccchh
Confidence 99999999999887 667777777654
No 37
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.34 E-value=1.7e-05 Score=72.97 Aligned_cols=135 Identities=20% Similarity=0.174 Sum_probs=108.9
Q ss_pred eEEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCC
Q 048431 151 TTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPG 230 (396)
Q Consensus 151 ~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~ 230 (396)
..+++..+++..|++.++.+.. .++.+..+.+++|+++++.. +..||++..+++++|+++.+.....+|.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~- 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMG- 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEc-
Confidence 3678888999999999997664 67789999999999999997 3689999999999999999999889999988
Q ss_pred CccEEEEeeeEeCC-ceEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecC-CccE
Q 048431 231 TNNLWIERVTCGPG-HGISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV-QHPI 308 (396)
Q Consensus 231 ~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~-~~~i 308 (396)
+.+.+|+++++... .||.+... .+.+|+++++.+...|+.+... .+.++++.++.+. ..++
T Consensus 87 s~~~~I~~N~i~~n~~GI~l~~s---------~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi 149 (236)
T PF05048_consen 87 SSNNTISNNTISNNGYGIYLYGS---------SNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGI 149 (236)
T ss_pred CCCcEEECCEecCCCceEEEeeC---------CceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccce
Confidence 45559999999754 47776332 3578999999988899988753 3466666666665 5666
Q ss_pred E
Q 048431 309 I 309 (396)
Q Consensus 309 ~ 309 (396)
.
T Consensus 150 ~ 150 (236)
T PF05048_consen 150 Y 150 (236)
T ss_pred E
Confidence 6
No 38
>PLN02176 putative pectinesterase
Probab=98.32 E-value=0.00033 Score=67.27 Aligned_cols=197 Identities=18% Similarity=0.136 Sum_probs=107.0
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEecCceEEEeceeecccCCCCcEEEEEee---EEEeeCCccccCCCcceEEEeceeeE
Q 048431 46 STQAFAKAWAAACASN-ESATIYVPKGRYLLGSVAFRSECKSPSITFLING---TLVAPTDYRVLGQANNWLSFEGVSHV 121 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~~-~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
+-..||+||+++-... ..-+|+|++|+|+-. +.++.. |. +++|.++| ++..-.+..
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~Ip~~-k~-~vtl~G~g~~~TiIt~~~~~----------------- 109 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNGIYREK-VTIPKE-KG-YIYMQGKGIEKTIIAYGDHQ----------------- 109 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCcEEEEE-EEECCC-Cc-cEEEEEcCCCceEEEEeCCc-----------------
Confidence 4778999998762211 123689999999733 344321 12 88888876 221101000
Q ss_pred EEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----------ceEEEe-eeecEEEEeEE
Q 048431 122 SIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----------YHIVIN-RCQDVLVEGAK 190 (396)
Q Consensus 122 ~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----------~~i~~~-~~~nv~i~n~~ 190 (396)
++ + ....+. ...+++..+++++.|... ..+.+. ..+...+.+|+
T Consensus 110 ----~t-~-------------------~saT~~-v~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~ 164 (340)
T PLN02176 110 ----AT-D-------------------TSATFT-SYASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSS 164 (340)
T ss_pred ----cc-c-------------------cceEEE-EECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccE
Confidence 00 0 011222 246778888888887521 223332 45778888888
Q ss_pred EEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC---------ce-EEEeeccccCCCCC
Q 048431 191 IIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG---------HG-ISIGSLAKDLDEEG 260 (396)
Q Consensus 191 i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---------~g-i~igs~g~~~~~~~ 260 (396)
+.+..| -+... ..+-.++||.|...=|-|. + .....+++|++..- .| |.--+. .....
T Consensus 165 f~G~QD-----TLy~~-~gRqyf~~CyIeG~VDFIF-G--~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r---~~~~~ 232 (340)
T PLN02176 165 FDGFQD-----TLFDG-KGRHYYKRCVISGGIDFIF-G--YAQSIFEGCTLKLTLGIYPPNEPYGTITAQGR---PSPSD 232 (340)
T ss_pred Eecccc-----eeEeC-CcCEEEEecEEEecccEEe-c--CceEEEeccEEEEecccCCCCCCcEEEEeCCC---CCCCC
Confidence 886432 22222 2457778888887655443 2 23688888877521 12 222111 11123
Q ss_pred EEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 261 VQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 261 ~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
-....|.||++.+.. -..+. +.-+....++|.|..|.+.
T Consensus 233 ~~GfvF~~C~itg~g-~~yLG----RPW~~yarvVf~~t~m~~~ 271 (340)
T PLN02176 233 KGGFVFKDCTVTGVG-KALLG----RAWGSYARVIFYRSRFSDV 271 (340)
T ss_pred CcEEEEECCEEccCc-ceeee----cCCCCCceEEEEecCcCCe
Confidence 346788888887643 12222 2233355677777777653
No 39
>PLN02665 pectinesterase family protein
Probab=98.14 E-value=0.00087 Score=65.04 Aligned_cols=204 Identities=15% Similarity=0.133 Sum_probs=108.8
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACASN-ESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~~-~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
|-..||+||+++-... ..-+|+|.+|+|.- .+.++.. |. +++|.+++.- ...|...
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~GvY~E-kV~Ip~~-kp-~Itl~G~~~~------------~tiIt~~-------- 135 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPGEYNE-KITIDRS-KP-FVTLYGSPGA------------MPTLTFD-------- 135 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCcEEEE-EEEecCC-CC-EEEEEecCCC------------CCEEEEC--------
Confidence 4778999998752211 12468899999973 3344321 12 7888877510 0011110
Q ss_pred ceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc---------ceEEEe-eeecEEEEeEEEEcC
Q 048431 125 GGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM---------YHIVIN-RCQDVLVEGAKIIAA 194 (396)
Q Consensus 125 Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~---------~~i~~~-~~~nv~i~n~~i~~~ 194 (396)
+.... +. .....-....++++..+|++|+|... ..+.+. ..+...+.||++.+.
T Consensus 136 -----~~a~~-~g----------T~~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~ 199 (366)
T PLN02665 136 -----GTAAK-YG----------TVYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGF 199 (366)
T ss_pred -----CccCC-CC----------CcceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccc
Confidence 00000 00 01123334567888888888888531 223332 467788888888864
Q ss_pred CCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeC-Cc---e-EEEeeccccCCCCCEEEEEEEee
Q 048431 195 GDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGP-GH---G-ISIGSLAKDLDEEGVQNVTVFKT 269 (396)
Q Consensus 195 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-~~---g-i~igs~g~~~~~~~~~ni~i~n~ 269 (396)
.| -+... ..+-.++||.|...=|-|. + .-...+++|++.. .. | |.--+ +.....-....|.||
T Consensus 200 QD-----TL~~~-~gr~yf~~CyIeG~VDFIF-G--~g~a~fe~C~i~s~~~~~~g~ITA~~---r~~~~~~~GfvF~~C 267 (366)
T PLN02665 200 QD-----TLCDD-KGRHFFKDCYIEGTVDFIF-G--SGKSLYLNTELHVVGDGGLRVITAQA---RNSEAEDSGFSFVHC 267 (366)
T ss_pred cc-----eeEeC-CCCEEEEeeEEeeccceec-c--ccceeeEccEEEEecCCCcEEEEcCC---CCCCCCCceEEEEee
Confidence 33 22222 2356778888887655443 2 2367888887753 11 2 22211 111122346678888
Q ss_pred EEeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 270 VFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 270 ~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
++.+....+.++ +.-+.-..++|.+..|.+.
T Consensus 268 ~itg~~~~~yLG----RpW~~ysrvVf~~t~m~~~ 298 (366)
T PLN02665 268 KVTGTGTGAYLG----RAWMSRPRVVFAYTEMSSV 298 (366)
T ss_pred EEecCCCceeec----CCCCCcceEEEEccccCCe
Confidence 888764223333 2233345677887777653
No 40
>PLN02634 probable pectinesterase
Probab=98.12 E-value=0.0013 Score=63.60 Aligned_cols=207 Identities=17% Similarity=0.124 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEee---EEEeeCCccccCCCcceEEEeceeeE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLING---TLVAPTDYRVLGQANNWLSFEGVSHV 121 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
|-..||+||+++-.. ...-+|+|-+|+|.-. +.++.. |. +++|.++| ++..-.+... +
T Consensus 67 df~TIQaAIda~P~~~~~r~vI~Ik~GvY~Ek-V~Ip~~-k~-~ItL~G~g~~~TiIt~~~~a~--------------~- 128 (359)
T PLN02634 67 DFRSVQDAVDSVPKNNTMSVTIKINAGFYREK-VVVPAT-KP-YITFQGAGRDVTAIEWHDRAS--------------D- 128 (359)
T ss_pred CccCHHHHHhhCcccCCccEEEEEeCceEEEE-EEEcCC-CC-eEEEEecCCCceEEEeccccc--------------c-
Confidence 477899999875221 1234699999999743 333210 12 88888886 2221111000 0
Q ss_pred EEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc---------ceEEEe-eeecEEEEeEEE
Q 048431 122 SIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM---------YHIVIN-RCQDVLVEGAKI 191 (396)
Q Consensus 122 ~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~---------~~i~~~-~~~nv~i~n~~i 191 (396)
.| -+|.. + . ..+. .-.....+++..+|++|+|... ..+.+. ..+...+.+|.|
T Consensus 129 --~~--~~g~~--~-~---------T~~S-aTv~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f 191 (359)
T PLN02634 129 --RG--ANGQQ--L-R---------TYQT-ASVTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGF 191 (359)
T ss_pred --cC--CCCcc--c-c---------cccc-eEEEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEE
Confidence 00 00100 0 0 0011 1223346788888888887631 223332 467788888888
Q ss_pred EcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC---ce-EEEeeccccCCCCCEEEEEEE
Q 048431 192 IAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG---HG-ISIGSLAKDLDEEGVQNVTVF 267 (396)
Q Consensus 192 ~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~g-i~igs~g~~~~~~~~~ni~i~ 267 (396)
.+..| -+-.. ..+-.++||.|...=|-|. + .-...+++|.+..- .| +.--+. .....-....|.
T Consensus 192 ~G~QD-----TL~~~-~gR~yf~~CyIeG~VDFIF-G--~g~a~Fe~C~I~s~~~~~g~ITA~~R---~~~~~~~GfvF~ 259 (359)
T PLN02634 192 YGAQD-----TLCDD-AGRHYFKECYIEGSIDFIF-G--NGRSMYKDCELHSIASRFGSIAAHGR---TCPEEKTGFAFV 259 (359)
T ss_pred ecccc-----eeeeC-CCCEEEEeeEEcccccEEc-C--CceEEEeccEEEEecCCCcEEEeCCC---CCCCCCcEEEEE
Confidence 86433 22222 2456778888887555443 2 23677888887532 23 222111 112233567888
Q ss_pred eeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 268 KTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 268 n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
||++.+.. -+.++ +.-+....++|.+..|.+.
T Consensus 260 ~C~vtg~g-~~yLG----RPW~~yarvVf~~t~l~~~ 291 (359)
T PLN02634 260 GCRVTGTG-PLYVG----RAMGQYSRIVYAYTYFDAV 291 (359)
T ss_pred cCEEcCCc-ceEec----CCCCCcceEEEEecccCCE
Confidence 88887753 22232 2333455677887777653
No 41
>PLN02682 pectinesterase family protein
Probab=98.11 E-value=0.00058 Score=66.17 Aligned_cols=208 Identities=15% Similarity=0.088 Sum_probs=105.2
Q ss_pred ccHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEee---EEEeeCCccccCCCcceEEEeceee
Q 048431 45 DSTQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLING---TLVAPTDYRVLGQANNWLSFEGVSH 120 (396)
Q Consensus 45 d~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 120 (396)
-|-.-||+||+++-.. ...-+|+|.+|+|.- .+.++.. |. +++|+++| ++..-.+...
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G~Y~E-kV~Ip~~-k~-~Itl~G~g~~~TiIt~~~~a~--------------- 141 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAGTYRE-KVNIPPL-KA-YITLEGAGADKTIIQWGDTAD--------------- 141 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCceeeE-EEEEecc-Cc-eEEEEecCCCccEEEeccccC---------------
Confidence 3567899999875221 123579999999963 3344210 13 88888876 2211000000
Q ss_pred EEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc---------ceEEEe-eeecEEEEeEE
Q 048431 121 VSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM---------YHIVIN-RCQDVLVEGAK 190 (396)
Q Consensus 121 v~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~---------~~i~~~-~~~nv~i~n~~ 190 (396)
.....|.. | ......-.....+++..+|++|.|... ..+.+. ..+...+.+|+
T Consensus 142 ------~~~~~g~~-~----------gT~~SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~ 204 (369)
T PLN02682 142 ------TPGPGGRP-L----------GTYGSATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCK 204 (369)
T ss_pred ------ccCCCCCc-c----------ccccceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcce
Confidence 00000000 0 001113334557788899999888631 123332 46777777777
Q ss_pred EEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeC---Cce-EEEeeccccCCCCCEEEEEE
Q 048431 191 IIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGP---GHG-ISIGSLAKDLDEEGVQNVTV 266 (396)
Q Consensus 191 i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~---~~g-i~igs~g~~~~~~~~~ni~i 266 (396)
|.+..| -+... ..+-.++||.|...=|-|.- .-...+++|++.. ..| |.--+. .....-....|
T Consensus 205 f~G~QD-----TLy~~-~gRqyf~~C~IeG~VDFIFG---~g~a~Fe~C~I~s~~~~~G~ITA~~r---~~~~~~~GfvF 272 (369)
T PLN02682 205 FLGAQD-----TLYDH-LGRHYFKDCYIEGSVDFIFG---NGLSLYEGCHLHAIARNFGALTAQKR---QSVLEDTGFSF 272 (369)
T ss_pred Eecccc-----ceEEC-CCCEEEEeeEEcccccEEec---CceEEEEccEEEEecCCCeEEecCCC---CCCCCCceEEE
Confidence 776432 22211 23456777777765454422 2367777777642 123 222110 01122346677
Q ss_pred EeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 267 FKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 267 ~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
.||++.+.. .+.+. +.-+....++|.|..|.+.
T Consensus 273 ~~C~itg~g-~~yLG----RpW~~yarvVf~~t~m~~~ 305 (369)
T PLN02682 273 VNCKVTGSG-ALYLG----RAWGTFSRVVFAYTYMDNI 305 (369)
T ss_pred EeeEecCCC-ceEee----cCCCCcceEEEEeccCCCc
Confidence 777776642 22222 1223345667777766653
No 42
>PLN02773 pectinesterase
Probab=98.10 E-value=0.00092 Score=63.74 Aligned_cols=212 Identities=16% Similarity=0.137 Sum_probs=114.1
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEecCceEEEeceeecccCCCCcEEEEEee---EEEeeCCccccCCCcceEEEeceeeE
Q 048431 46 STQAFAKAWAAACASN-ESATIYVPKGRYLLGSVAFRSECKSPSITFLING---TLVAPTDYRVLGQANNWLSFEGVSHV 121 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~~-~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
|-.-||+||+++-... ..-+|+|.+|+|+ ..+.++.. |. +++|.+++ ++..-.+..... .-.+ ..
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G~Y~-E~V~I~~~-k~-~itl~G~~~~~TiI~~~~~a~~~------~~~~-~~- 84 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPGVYR-QPVYVPKT-KN-LITLAGLSPEATVLTWNNTATKI------DHHQ-AS- 84 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCceEE-EEEEECcC-Cc-cEEEEeCCCCceEEEccCccccc------cccc-cc-
Confidence 3778999998763221 1247999999997 33445321 12 78888875 222111110000 0000 00
Q ss_pred EEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCC
Q 048431 122 SIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGD 196 (396)
Q Consensus 122 ~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~ 196 (396)
...| .+ .-...-.....+++..++++|+|... ..+.+. ..+.+.+.+|+|.+..|
T Consensus 85 ~~~g-----~g---------------T~~SaTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QD 144 (317)
T PLN02773 85 RVIG-----TG---------------TFGCGTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQD 144 (317)
T ss_pred cccC-----cC---------------ccCceEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccc
Confidence 0000 00 00112344468899999999998732 233332 46788888888887433
Q ss_pred CCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC-ce-EEEeeccccCCCCCEEEEEEEeeEEeCC
Q 048431 197 SPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG-HG-ISIGSLAKDLDEEGVQNVTVFKTVFTGT 274 (396)
Q Consensus 197 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-~g-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 274 (396)
-+-... .+-.++||.|...=|-|. + .-...+++|.+... .| |.--+. .....-....|.||++.+.
T Consensus 145 -----TL~~~~-gr~yf~~c~IeG~VDFIF-G--~g~a~Fe~c~i~s~~~g~ITA~~r---~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 145 -----TLYLHY-GKQYLRDCYIEGSVDFIF-G--NSTALLEHCHIHCKSAGFITAQSR---KSSQESTGYVFLRCVITGN 212 (317)
T ss_pred -----eeEeCC-CCEEEEeeEEeecccEEe-e--ccEEEEEeeEEEEccCcEEECCCC---CCCCCCceEEEEccEEecC
Confidence 232222 357788888887655443 2 23688888888642 34 322111 0111234678888888875
Q ss_pred cc--EEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 275 TN--GLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 275 ~~--gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
.. -..+. +.-+....++|.|..|.+.
T Consensus 213 ~~~~~~yLG----RpW~~~a~vVf~~t~l~~~ 240 (317)
T PLN02773 213 GGSGYMYLG----RPWGPFGRVVFAYTYMDAC 240 (317)
T ss_pred CCCcceeec----CCCCCCceEEEEecccCCe
Confidence 32 12222 1223355777888877753
No 43
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.04 E-value=0.0012 Score=64.83 Aligned_cols=115 Identities=11% Similarity=0.139 Sum_probs=61.4
Q ss_pred EEEEeecCeEEEEEEEecCCc--------ceEEEe-eeecEEEEeEEEEcCCCCCCC------CCeeeeceeeEEEEecE
Q 048431 153 LSITKSNNIRINGLLSLNSQM--------YHIVIN-RCQDVLVEGAKIIAAGDSPNT------DGIHVQQSRNVIIKSSS 217 (396)
Q Consensus 153 i~~~~~~nv~i~~~~i~~~~~--------~~i~~~-~~~nv~i~n~~i~~~~~~~~~------DGi~~~~s~nv~I~n~~ 217 (396)
......+++..++++|.|... ..+.+. ..+.+.+.+|+|.+..|.... .+.......+-.++||+
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 444567888888888888742 223332 467777888888764331111 00001112356777787
Q ss_pred EecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEeeEEeCC
Q 048431 218 IKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKTVFTGT 274 (396)
Q Consensus 218 i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~~~~~~ 274 (396)
|...=|-|. + .-..++++|.+..- .| +.-.+. ....-....|.||++...
T Consensus 280 IeG~VDFIF-G--~g~AvFenC~I~s~~~~~~~~g~ITA~~t----~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 280 IEGDVDFVF-G--RGAVVFDNTEFRVVNSRTQQEAYVFAPAT----LPNIYYGFLAINSRFNAS 336 (422)
T ss_pred EeecccEEc-c--CceEEEEcCEEEEecCCCCCceEEEecCC----CCCCCCEEEEECCEEecC
Confidence 776544432 2 23677777776431 12 111111 122334667777777764
No 44
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.02 E-value=6e-05 Score=67.59 Aligned_cols=100 Identities=27% Similarity=0.376 Sum_probs=68.5
Q ss_pred ceEEEe-eeecEEEEeEEEEcC-----------CCCCCCCCeeeeceeeEEEEecEEecC---------CceEEeCCCCc
Q 048431 174 YHIVIN-RCQDVLVEGAKIIAA-----------GDSPNTDGIHVQQSRNVIIKSSSIKTG---------DDCISIGPGTN 232 (396)
Q Consensus 174 ~~i~~~-~~~nv~i~n~~i~~~-----------~~~~~~DGi~~~~s~nv~I~n~~i~~~---------dD~i~i~~~~~ 232 (396)
+++.+. .++||.|+|++|+.. ......|+|.+..+++|.|++|.+..+ |..+.++.++.
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~ 116 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSD 116 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTE
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCc
Confidence 355555 778888888888861 112468999999999999999999876 45578888899
Q ss_pred cEEEEeeeEeCCc-eEEEeeccccCCCCCEEEEEEEeeEEeCC
Q 048431 233 NLWIERVTCGPGH-GISIGSLAKDLDEEGVQNVTVFKTVFTGT 274 (396)
Q Consensus 233 ni~i~n~~~~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~ 274 (396)
+|+|++|.+...+ +.-+|+......... .++++.++.+.++
T Consensus 117 ~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 117 NVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred eEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 9999999997643 455666422222334 8999999999764
No 45
>PLN02497 probable pectinesterase
Probab=98.02 E-value=0.002 Score=61.74 Aligned_cols=200 Identities=14% Similarity=0.089 Sum_probs=104.9
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACASN-ESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~~-~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-..||+||+++-... ..-+|+|-+|+|+-. +.++.. |. +++|.++|.- ...|...+..
T Consensus 43 df~TIq~AIdavP~~~~~~~~I~Ik~G~Y~Ek-V~Ip~~-k~-~itl~G~g~~------------~tiIt~~~~~----- 102 (331)
T PLN02497 43 NFTTIQSAIDSVPSNNKHWFCINVKAGLYREK-VKIPYD-KP-FIVLVGAGKR------------RTRIEWDDHD----- 102 (331)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCcEEEEE-EEecCC-CC-cEEEEecCCC------------CceEEEeccc-----
Confidence 4778999998762211 123599999999643 333211 12 8888887610 0001110000
Q ss_pred ceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc-----------ceEEE-eeeecEEEEeEEEE
Q 048431 125 GGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM-----------YHIVI-NRCQDVLVEGAKII 192 (396)
Q Consensus 125 Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~-----------~~i~~-~~~~nv~i~n~~i~ 192 (396)
++ . ...-.....+++..+|++|.|... ..+.+ ...+...+.+|.+.
T Consensus 103 -~t-------------------~--~SaT~~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~ 160 (331)
T PLN02497 103 -ST-------------------A--QSPTFSTLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFA 160 (331)
T ss_pred -cc-------------------c--CceEEEEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEe
Confidence 00 0 001123446778888888887632 12222 24577888888888
Q ss_pred cCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC--------ce-EEEeeccccCCCCCEEE
Q 048431 193 AAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG--------HG-ISIGSLAKDLDEEGVQN 263 (396)
Q Consensus 193 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~--------~g-i~igs~g~~~~~~~~~n 263 (396)
+..| -+-. ...+-.++||.|...=|-|. + .-...+++|.+..- .| |.--+ +........
T Consensus 161 G~QD-----TLy~-~~gRqyf~~C~IeG~VDFIF-G--~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~---r~~~~~~~G 228 (331)
T PLN02497 161 GVQD-----TLWD-SDGRHYFKRCTIQGAVDFIF-G--SGQSIYESCVIQVLGGQLEPGLAGFITAQG---RTNPYDANG 228 (331)
T ss_pred cccc-----ceee-CCCcEEEEeCEEEecccEEc-c--CceEEEEccEEEEecCcCCCCCceEEEecC---CCCCCCCce
Confidence 7433 2221 22356778888887555442 2 23678888877521 13 22211 011223346
Q ss_pred EEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 264 VTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 264 i~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
..|.||++.+.. -..+. +.-+.-..++|.|..|.+.
T Consensus 229 fvF~~C~itg~g-~~yLG----RPW~~ysrvvf~~t~m~~~ 264 (331)
T PLN02497 229 FVFKNCLVYGTG-SAYLG----RPWRGYSRVLFYNSNLTDV 264 (331)
T ss_pred EEEEccEEccCC-CEEEe----CCCCCCceEEEEecccCCe
Confidence 688888887643 22232 1223345677777777654
No 46
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.93 E-value=0.0016 Score=66.79 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHhhc--CCCcEEEecCceEEEeceeecccCCCCcEEEEEee
Q 048431 46 STQAFAKAWAAACAS--NESATIYVPKGRYLLGSVAFRSECKSPSITFLING 95 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~--~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G 95 (396)
+-.-||+||+++-.. ...-+|+|.+|+|.-. +.++.. |. |++|.++|
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E~-V~i~~~-k~-~v~l~G~g 300 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEET-VRVPLE-KK-NVVFLGDG 300 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCceEEee-eeecCC-Cc-cEEEEecC
Confidence 467799999876321 2234899999999742 333211 12 88888876
No 47
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.93 E-value=0.002 Score=65.30 Aligned_cols=202 Identities=10% Similarity=0.182 Sum_probs=110.5
Q ss_pred cHHHHHHHHHHHhh--cCCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEE
Q 048431 46 STQAFAKAWAAACA--SNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSI 123 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~--~~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 123 (396)
+-.-||+||+++.. ....-+|+|.+|+|.- .+.++.. |. +++|.++|. +...|
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-nItl~G~g~----------------------~~TiI 290 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYHE-NLNIPTK-QK-NVMLVGDGK----------------------GKTVI 290 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeEE-EEecCCC-Cc-eEEEEEcCC----------------------CCeEE
Confidence 46789999976422 1223579999999973 3334321 12 888888762 11111
Q ss_pred Ece--EEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCC
Q 048431 124 IGG--ALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGD 196 (396)
Q Consensus 124 ~Gg--~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~ 196 (396)
.+. .-+| |.. -...-.....+++..+|++|+|... ..+.+. ..+...+.+|++.+..|
T Consensus 291 t~~~~~~~g-----~~T----------~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQD 355 (529)
T PLN02170 291 VGSRSNRGG-----WTT----------YQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQD 355 (529)
T ss_pred EeCCcCCCC-----Ccc----------ccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCC
Confidence 110 0011 000 0112344557888889999988632 233333 56788888888887433
Q ss_pred CCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC-----ce-EEEeeccccCCCCCEEEEEEEeeE
Q 048431 197 SPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG-----HG-ISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 197 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-----~g-i~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
-+.... .+-.+++|+|...=|-|. |.-...++||.+..- .| |.--+ +.....-..+.|.||+
T Consensus 356 -----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avFq~C~I~~~~~~~~~g~ITAq~---R~~~~~~~Gfvf~~C~ 423 (529)
T PLN02170 356 -----SLYTHS-KRQFYRETDITGTVDFIF---GNSAVVFQSCNIAARKPSGDRNYVTAQG---RSDPNQNTGISIHNCR 423 (529)
T ss_pred -----cceeCC-CCEEEEeeEEccccceec---ccceEEEeccEEEEecCCCCceEEEecC---CCCCCCCceEEEEeeE
Confidence 232222 345778888887555442 234688888877531 12 22211 1112234577888888
Q ss_pred EeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 271 FTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 271 ~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
+.+.. ...++ +.-.....++|.+..|.+.
T Consensus 424 it~~~-~~yLG----RPW~~ysrvVf~~t~l~~~ 452 (529)
T PLN02170 424 ITAES-MTYLG----RPWKEYSRTVVMQSFIDGS 452 (529)
T ss_pred EecCC-ceeee----CCCCCCceEEEEecccCCe
Confidence 87753 12222 2333355677777777653
No 48
>smart00656 Amb_all Amb_all domain.
Probab=97.89 E-value=0.00065 Score=60.35 Aligned_cols=134 Identities=18% Similarity=0.226 Sum_probs=87.4
Q ss_pred EEEEEeecCeEEEEEEEecCC------cceEEEeeeecEEEEeEEEEcCC----CCCCCCCe-eee-ceeeEEEEecEEe
Q 048431 152 TLSITKSNNIRINGLLSLNSQ------MYHIVINRCQDVLVEGAKIIAAG----DSPNTDGI-HVQ-QSRNVIIKSSSIK 219 (396)
Q Consensus 152 ~i~~~~~~nv~i~~~~i~~~~------~~~i~~~~~~nv~i~n~~i~~~~----~~~~~DGi-~~~-~s~nv~I~n~~i~ 219 (396)
.|.+..++||.|+++++++.. .+++.+..+++|.|++|++.... .....||. ++. .+.+++|.+|.+.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 355666788888888888753 35788888899999999998641 01124554 343 4799999999998
Q ss_pred cCCceEEeCCCCc-------cEEEEeeeEeCCce--EEEeeccccCCCCCEEEEEEEeeEEeCCc-cEEEEEeecCCCCc
Q 048431 220 TGDDCISIGPGTN-------NLWIERVTCGPGHG--ISIGSLAKDLDEEGVQNVTVFKTVFTGTT-NGLRIKSWARPSNG 289 (396)
Q Consensus 220 ~~dD~i~i~~~~~-------ni~i~n~~~~~~~g--i~igs~g~~~~~~~~~ni~i~n~~~~~~~-~gi~i~~~~~~~~g 289 (396)
..+-+.-++++.+ +|++.+|.+....+ =.+ ..+ .+++.|+.+.+.. +++.... + ..-
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~--------r~g--~~hv~NN~~~n~~~~~~~~~~--~-~~v 179 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRV--------RFG--YVHVYNNYYTGWTSYAIGGRM--G-ATI 179 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcc--------cCC--EEEEEeeEEeCcccEeEecCC--C-cEE
Confidence 7666666766432 69999998864321 111 112 6788999988864 4443332 1 333
Q ss_pred eEEcEEEEe
Q 048431 290 FVRGIRFID 298 (396)
Q Consensus 290 ~v~nI~~~n 298 (396)
.+++..|++
T Consensus 180 ~~E~N~F~~ 188 (190)
T smart00656 180 LSEGNYFEA 188 (190)
T ss_pred EEECeEEEC
Confidence 455555554
No 49
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.86 E-value=0.001 Score=60.23 Aligned_cols=122 Identities=25% Similarity=0.372 Sum_probs=76.1
Q ss_pred EEEEEEEecCC------cceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEE
Q 048431 162 RINGLLSLNSQ------MYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLW 235 (396)
Q Consensus 162 ~i~~~~i~~~~------~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~ 235 (396)
.++++++.... ..++.+..++++.|+|+++.+. +.+|+.+..+....+.+..... ++.+..+..++.
T Consensus 95 ~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 167 (225)
T PF12708_consen 95 QIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNGSNNVI 167 (225)
T ss_dssp EEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESCEEEEE
T ss_pred EEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccceeEEE
Confidence 37777776432 2458888889999999999873 4577777754444444433221 233333345677
Q ss_pred EEeeeEeCC-ceEEEeeccccCCCCCEEEEEEEeeEEeC-CccEEEEEeecCCCCceEEcEEEEeeEeecCCccE
Q 048431 236 IERVTCGPG-HGISIGSLAKDLDEEGVQNVTVFKTVFTG-TTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPI 308 (396)
Q Consensus 236 i~n~~~~~~-~gi~igs~g~~~~~~~~~ni~i~n~~~~~-~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i 308 (396)
+.++.+..+ .|+..++ ++++++||++.+ ...|+.+.... +++++|++++++..++
T Consensus 168 ~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 168 VNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCDDGI 224 (225)
T ss_dssp EECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSSEEE
T ss_pred ECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCccCc
Confidence 788877654 3543322 688999999888 67788777532 1677777777766554
No 50
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.85 E-value=0.0012 Score=67.84 Aligned_cols=207 Identities=14% Similarity=0.146 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHHhhc----CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeE
Q 048431 46 STQAFAKAWAAACAS----NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHV 121 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~----~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
+-.-||+||+++-.. ...-+|+|.+|+|.- .+.++.. |. +++|.++|. ...
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E-~V~i~~~-k~-~i~l~G~g~----------------------~~T 315 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEE-YVSIPKN-KK-YLMMIGDGI----------------------NQT 315 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEE-EEEecCC-Cc-eEEEEecCC----------------------CCc
Confidence 467899999765221 112469999999974 3344321 12 788888761 111
Q ss_pred EEEc--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcC
Q 048431 122 SIIG--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAA 194 (396)
Q Consensus 122 ~I~G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~ 194 (396)
.|.| -..+| |... +. .-.....+++..++++|.|... ..+.+. ..+...+.+|.|.+.
T Consensus 316 iIt~~~~~~~g-----~~T~---------~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~ 380 (566)
T PLN02713 316 VITGNRSVVDG-----WTTF---------NS-ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAY 380 (566)
T ss_pred EEEcCCcccCC-----Cccc---------cc-eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccC
Confidence 1111 00111 1100 11 2233456889999999998632 233332 567888888888874
Q ss_pred CCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEE
Q 048431 195 GDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVF 267 (396)
Q Consensus 195 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~ 267 (396)
. |-+.... .+-.++||+|...=|-|. |.-...++||.+... .+ |.--+ +.....-..+.|.
T Consensus 381 Q-----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~~~~~~~~~~~iTAq~---r~~~~~~~G~vf~ 448 (566)
T PLN02713 381 Q-----DTLYTHS-LRQFYRECDIYGTVDFIF---GNAAVVFQNCNLYPRLPMQGQFNTITAQG---RTDPNQNTGTSIQ 448 (566)
T ss_pred C-----cceEECC-CCEEEEeeEEecccceec---ccceEEEeccEEEEecCCCCCcceeeecC---CCCCCCCCEEEEE
Confidence 3 3333332 356788888886555442 234788888887431 12 22211 1112234578888
Q ss_pred eeEEeCCccEE----EEEeecCCCCceEEcEEEEeeEeecC
Q 048431 268 KTVFTGTTNGL----RIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 268 n~~~~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
||++....... ..+.+=|+.-.....++|.+..|.+.
T Consensus 449 ~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~~ 489 (566)
T PLN02713 449 NCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDGL 489 (566)
T ss_pred cCEEecCCcccccccccceeeecCCCCcceEEEEecccCCe
Confidence 88888753211 11111122334456677777777654
No 51
>PLN02916 pectinesterase family protein
Probab=97.79 E-value=0.0022 Score=64.61 Aligned_cols=207 Identities=13% Similarity=0.108 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHhh----cCCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeE
Q 048431 46 STQAFAKAWAAACA----SNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHV 121 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~----~~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
+-.-||+||+++-. ....-+|+|.+|+|.- .+.++.. |. +++|.++|. +..
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~i~l~G~g~----------------------~~T 252 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAGVYNE-KVEIDRH-MK-NVMFVGDGM----------------------DKT 252 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCceeeE-EEEecCC-Cc-eEEEEecCC----------------------CCc
Confidence 46679999977621 0122479999999973 3344321 12 788888761 011
Q ss_pred EEEc--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcC
Q 048431 122 SIIG--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAA 194 (396)
Q Consensus 122 ~I~G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~ 194 (396)
.|.+ ..-+|.. .-...-.....+++..+|++|.|... ..+.+. .++...+.+|.|.+.
T Consensus 253 iIt~~~~~~~g~~---------------T~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~ 317 (502)
T PLN02916 253 IITNNRNVPDGST---------------TYSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGY 317 (502)
T ss_pred EEEeCCccCCCCc---------------ceeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecc
Confidence 1111 0001100 00112334456788888888887632 233333 467788888888864
Q ss_pred CCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEE
Q 048431 195 GDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVF 267 (396)
Q Consensus 195 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~ 267 (396)
. |-+.... .+-..+||+|...=|-|. |.-...++||.+... .| |.--+ +.....-..+.|.
T Consensus 318 Q-----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avFq~C~I~~~~~~~~~~g~ITAq~---r~~~~~~tGfvf~ 385 (502)
T PLN02916 318 Q-----DTLFVHS-LRQFYRDCHIYGTIDFIF---GDAAVVFQNCDIFVRRPMDHQGNMITAQG---RDDPHENTGISIQ 385 (502)
T ss_pred C-----ceeEeCC-CCEEEEecEEecccceec---cCceEEEecCEEEEecCCCCCcceEEecC---CCCCCCCcEEEEE
Confidence 3 2232222 345778888886555442 234677788877421 12 22111 1112234577888
Q ss_pred eeEEeCCccEE----EEEeecCCCCceEEcEEEEeeEeecC
Q 048431 268 KTVFTGTTNGL----RIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 268 n~~~~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
||++....... ..+.+=|+.-+....++|.+..|.+.
T Consensus 386 ~C~it~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t~~~~~ 426 (502)
T PLN02916 386 HSRVRASPEFEAVKGRFKSFLGRPWKKYSRTVFLKTDLDGL 426 (502)
T ss_pred eeEEecCccccccccccceEeecCCCCCceEEEEecccCCe
Confidence 88887753211 01111122334456677777777654
No 52
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.79 E-value=0.00058 Score=64.93 Aligned_cols=204 Identities=18% Similarity=0.198 Sum_probs=101.9
Q ss_pred ccHHHHHHHHHHHhhcC-CCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEE
Q 048431 45 DSTQAFAKAWAAACASN-ESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSI 123 (396)
Q Consensus 45 d~t~aiq~Ai~~a~~~~-~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 123 (396)
-|-..||+||+++-... ..-+|+|.||+|.- .+.++.. |. +++|.++|. ....|
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G~Y~E-~V~i~~~-k~-~v~l~G~~~----------------------~~tiI 64 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPGTYRE-KVTIPRS-KP-NVTLIGEGR----------------------DKTII 64 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SEEEE---EEE-ST-ST-TEEEEES-T----------------------TTEEE
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCeeEcc-ccEeccc-cc-eEEEEecCC----------------------CceEE
Confidence 35677999998762211 23479999999973 3444321 12 788887751 01111
Q ss_pred Ec--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcc----eEEE-eeeecEEEEeEEEEcCCC
Q 048431 124 IG--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMY----HIVI-NRCQDVLVEGAKIIAAGD 196 (396)
Q Consensus 124 ~G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~----~i~~-~~~~nv~i~n~~i~~~~~ 196 (396)
.+ ...++.+. .+... .....+++.+++++|.|.... .+.+ ...+.+.+.+|.|.+.
T Consensus 65 ~~~~~~~~~~~t--------------~~saT-~~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~-- 127 (298)
T PF01095_consen 65 TGNDNAADGGGT--------------FRSAT-FSVNADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGY-- 127 (298)
T ss_dssp EE---TTTB-HC--------------GGC-S-EEE-STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-S--
T ss_pred EEeccccccccc--------------ccccc-ccccccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEccc--
Confidence 11 00000000 01112 234578999999999885321 1222 2457889999999874
Q ss_pred CCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeC-----C-ce-EEEeeccccCCCCCEEEEEEEee
Q 048431 197 SPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGP-----G-HG-ISIGSLAKDLDEEGVQNVTVFKT 269 (396)
Q Consensus 197 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-----~-~g-i~igs~g~~~~~~~~~ni~i~n~ 269 (396)
.|-+.... .+..++||.|...-|-|.-. ....+++|.+.. + .+ |.-.+. .....-....|.||
T Consensus 128 ---QDTL~~~~-~r~y~~~c~IeG~vDFIfG~---~~a~f~~c~i~~~~~~~~~~~~ItA~~r---~~~~~~~G~vF~~c 197 (298)
T PF01095_consen 128 ---QDTLYANG-GRQYFKNCYIEGNVDFIFGN---GTAVFENCTIHSRRPGGGQGGYITAQGR---TSPSQKSGFVFDNC 197 (298)
T ss_dssp ---TT-EEE-S-SEEEEES-EEEESEEEEEES---SEEEEES-EEEE--SSTSSTEEEEEE------CTTSS-EEEEES-
T ss_pred ---cceeeecc-ceeEEEeeEEEecCcEEECC---eeEEeeeeEEEEeccccccceeEEeCCc---cccCCCeEEEEEEe
Confidence 34444333 46788899998876655433 367888888752 1 23 322211 11234567889999
Q ss_pred EEeCCcc--------EEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 270 VFTGTTN--------GLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 270 ~~~~~~~--------gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
++..... ...+. +..+.-..++|.|..|.+.
T Consensus 198 ~i~~~~~~~~~~~~~~~yLG----RpW~~~s~vvf~~t~m~~~ 236 (298)
T PF01095_consen 198 TITGDSGVSPSYSDGSVYLG----RPWGPYSRVVFINTYMDDH 236 (298)
T ss_dssp EEEESTTTCGGCCCSTEEEE------SSEETEEEEES-EE-TT
T ss_pred EEecCccccccccceeEEec----CcccceeeEEEEccccCCe
Confidence 9986421 22332 1233455688888888765
No 53
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.77 E-value=0.0038 Score=63.50 Aligned_cols=207 Identities=14% Similarity=0.170 Sum_probs=109.7
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-.-||+||+++-.. ...-+|+|.+|+|. ..+.++.. | ++++|.++|. ....|.
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~~-k-~~itl~G~g~----------------------~~TiIt 283 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGGEYF-ENVELPKK-K-TMIMFIGDGI----------------------GKTVIK 283 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCceEE-EEEEecCC-C-ceEEEEEcCC----------------------CCcEEE
Confidence 467899999866221 12347999999997 34445321 1 2788888762 011111
Q ss_pred c--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 G--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
+ ...|| |... ...-.....+++..++++|.|... ..+.+. ..+...+.+|.|.+..|
T Consensus 284 ~~~~~~dg-----~~T~----------~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD- 347 (530)
T PLN02933 284 ANRSRIDG-----WSTF----------QTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQD- 347 (530)
T ss_pred eCCccCCC-----Cccc----------cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEeccc-
Confidence 1 00011 1000 112234457788888888888632 234443 46778888888887433
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEeeE
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
-+.... .+-.+++|+|...=|-|. |.-...+++|.+..- .+ +.--+ +.....-..+.|.||+
T Consensus 348 ----TLy~~~-~Rqyy~~C~IeGtVDFIF---G~a~avFq~C~i~~~~~~~~~~~~iTAq~---r~~~~~~tGfvf~~C~ 416 (530)
T PLN02933 348 ----TLYVHS-AKQFYRECDIYGTIDFIF---GNAAVVFQNCSLYARKPNPNHKIAFTAQS---RNQSDQPTGISIISSR 416 (530)
T ss_pred ----ccccCC-CceEEEeeEEecccceec---cCceEEEeccEEEEeccCCCCceEEEecC---CCCCCCCceEEEEeeE
Confidence 222222 345778888886544332 233677888877421 12 22211 1112234567888888
Q ss_pred EeCCccEEE----EEeecCCCCceEEcEEEEeeEeecC
Q 048431 271 FTGTTNGLR----IKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 271 ~~~~~~gi~----i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
+........ ...+=|+.-+....++|.+..|.+.
T Consensus 417 it~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~s~l~~~ 454 (530)
T PLN02933 417 ILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDL 454 (530)
T ss_pred EecCCcccccccccceEeccCCCCCceEEEEecccCCe
Confidence 876432111 1111122334456677777777653
No 54
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.73 E-value=0.0034 Score=64.31 Aligned_cols=207 Identities=12% Similarity=0.110 Sum_probs=112.5
Q ss_pred cHHHHHHHHHHHhhcC----CCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeE
Q 048431 46 STQAFAKAWAAACASN----ESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHV 121 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~~----~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
+-.-||+||+++-... +--+|||.+|+|.- .+.++.. |. +++|.++|. +..
T Consensus 234 ~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~E-~V~i~~~-k~-~i~l~G~g~----------------------~~t 288 (538)
T PLN03043 234 NFTTITDAIAAAPNNSKPEDGYFVIYAREGYYEE-YVVVPKN-KK-NIMLIGDGI----------------------NKT 288 (538)
T ss_pred CCcCHHHHHHhccccCCCCcceEEEEEcCeeeEE-EEEeCCC-CC-cEEEEecCC----------------------CCe
Confidence 4678999997652211 12379999999974 3334221 12 888888861 111
Q ss_pred EEEc--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcC
Q 048431 122 SIIG--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAA 194 (396)
Q Consensus 122 ~I~G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~ 194 (396)
.|.| -..|| |..+ ...-.....+++..++++|+|... ..+.+. ..+...+.+|.|.+.
T Consensus 289 iIt~~~~~~dg-----~~T~----------~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gy 353 (538)
T PLN03043 289 IITGNHSVVDG-----WTTF----------NSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGY 353 (538)
T ss_pred EEEeCCccCCC-----Cccc----------cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEecc
Confidence 1111 01111 1111 113344456889999999998632 234333 567788888888874
Q ss_pred CCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEE
Q 048431 195 GDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVF 267 (396)
Q Consensus 195 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~ 267 (396)
.| -+... +.+-..+||.|...=|-|.- .-...++||.+..- .+ |.-.+ +.+...-..+.|.
T Consensus 354 QD-----TLy~~-~~rq~y~~c~I~GtVDFIFG---~a~avfq~c~i~~r~~~~~~~~~iTA~~---r~~~~~~tG~~~~ 421 (538)
T PLN03043 354 QD-----TLYVH-SLRQFYRECDIYGTVDFIFG---NAAAIFQNCNLYARKPMANQKNAFTAQG---RTDPNQNTGISII 421 (538)
T ss_pred Cc-----ccccC-CCcEEEEeeEEeeccceEee---cceeeeeccEEEEecCCCCCCceEEecC---CCCCCCCceEEEE
Confidence 43 22222 23467788888876554432 24688888887431 12 33211 1112334578888
Q ss_pred eeEEeCCccEE----EEEeecCCCCceEEcEEEEeeEeecC
Q 048431 268 KTVFTGTTNGL----RIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 268 n~~~~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
||++.....-. ..+.+=|+.-.....++|-+..|.+.
T Consensus 422 ~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~~ 462 (538)
T PLN03043 422 NCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGDL 462 (538)
T ss_pred ecEEecCCcccccccccceeccCCCCCCceEEEEecccCCe
Confidence 88887753210 01112132334456677777777653
No 55
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.73 E-value=0.0033 Score=64.73 Aligned_cols=207 Identities=13% Similarity=0.135 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-.-||+||+++-.. ...-+|+|.+|+|.- .+.++.. |. |++|.++|. +...|.
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~E-~V~i~~~-k~-~i~~~G~g~----------------------~~tiIt 323 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKGVYFE-NVRVEKK-KW-NVVMVGDGM----------------------SKTIVS 323 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCceEE-EEEecCC-CC-eEEEEecCC----------------------CCCEEE
Confidence 357899999776322 223589999999974 3344221 12 788888761 000111
Q ss_pred c--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 G--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
| -..||.. . . ...-.....+++..++++|+|... ..+.+. ..+...+.+|+|.+..|
T Consensus 324 ~~~~~~dg~~-t-------------~-~saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD- 387 (565)
T PLN02468 324 GSLNFVDGTP-T-------------F-STATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQD- 387 (565)
T ss_pred eCCccCCCCC-c-------------c-ceeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccc-
Confidence 1 0011110 0 0 112233446788899999988632 233333 56888999999987443
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEeeE
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
-+.... .+-..+||.|...=|-|. |.-...++||.+... .+ |.--+ +.+...-..+.|.||+
T Consensus 388 ----TLy~~~-~rq~y~~C~I~GtvDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTA~~---r~~~~~~~G~vf~~c~ 456 (565)
T PLN02468 388 ----TLYAHA-QRQFYRECNIYGTVDFIF---GNSAVVFQNCNILPRRPMKGQQNTITAQG---RTDPNQNTGISIQNCT 456 (565)
T ss_pred ----hhccCC-CceEEEeeEEecccceee---ccceEEEeccEEEEecCCCCCCceEEecC---CCCCCCCceEEEEccE
Confidence 222222 345688999887655443 234788888887421 12 32211 1122334578899999
Q ss_pred EeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 271 FTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 271 ~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
+......-..+.+=|+.......++|-+..|.+.
T Consensus 457 i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~~ 490 (565)
T PLN02468 457 ILPLGDLTSVKTFLGRPWKNYSTTVIMHSMMGSL 490 (565)
T ss_pred EecCCCccccceeeecCCCCCceEEEEecccCCe
Confidence 8875321112222232334455677777777653
No 56
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.67 E-value=0.0068 Score=62.75 Aligned_cols=208 Identities=14% Similarity=0.181 Sum_probs=109.2
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
|-.-||+||+++-.. ...-+|+|.+|+|.-..+.++.. |. |++|.++|. +...|.
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k~-ni~l~G~g~----------------------~~TiIt 338 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGRK-KT-NLMFIGDGK----------------------GKTVIT 338 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECCC-Cc-eEEEEecCC----------------------CCeEEe
Confidence 367799999765221 12357999999997644555321 12 788888762 111111
Q ss_pred ce--EEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 GG--ALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 Gg--~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
|+ ..++.+ . -...-.....+++..++++|.|... ..+.+. ..+...+.+|.|.+..|
T Consensus 339 ~~~~~~~~~~-t--------------~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QD- 402 (587)
T PLN02484 339 GGKSIFDNLT-T--------------FHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQD- 402 (587)
T ss_pred cCCcccCCCc-c--------------cceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCc-
Confidence 10 001100 0 0112233456788888888887632 233333 46778888888886433
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEeeE
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
-+... +.+-.++||+|...=|-|. |.-...++||.+..- .| |.--+ +.+...-..+.|.||+
T Consensus 403 ----TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~~~~~~~~~~~ITAq~---r~~~~~~~G~vf~~c~ 471 (587)
T PLN02484 403 ----TLYVH-SNRQFFRECDIYGTVDFIF---GNAAVVLQNCSIYARKPMAQQKNTITAQN---RKDPNQNTGISIHACR 471 (587)
T ss_pred ----ccccC-CCcEEEEecEEEeccceec---ccceeEEeccEEEEecCCCCCceEEEecC---CCCCCCCcEEEEEeeE
Confidence 22222 2345777888876544332 234677788877421 12 22211 1112234577888888
Q ss_pred EeCCccEE----EEEeecCCCCceEEcEEEEeeEeecC
Q 048431 271 FTGTTNGL----RIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 271 ~~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
+....... ..+.+=|+.-.....++|.+..|.+.
T Consensus 472 i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~ 509 (587)
T PLN02484 472 ILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDH 509 (587)
T ss_pred EecCCccccccCccceeccCCCCCCceEEEEecccCCe
Confidence 87643210 11112132334456667777766653
No 57
>PLN02304 probable pectinesterase
Probab=97.66 E-value=0.013 Score=57.04 Aligned_cols=199 Identities=16% Similarity=0.125 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEee---EEEeeCCccccCCCcceEEEeceeeE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLING---TLVAPTDYRVLGQANNWLSFEGVSHV 121 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
|-.-||+||+++-.. ...-+|+|.+|+|.- .+.++.. |. +++|.++| ++..-.+...
T Consensus 86 df~TIQ~AIdavP~~~~~r~vI~Ik~GvY~E-kV~Ip~~-K~-~Itl~G~g~~~TiIt~~~~a~---------------- 146 (379)
T PLN02304 86 NFTTVQSAVDAVGNFSQKRNVIWINSGIYYE-KVTVPKT-KP-NITFQGQGFDSTAIAWNDTAK---------------- 146 (379)
T ss_pred CccCHHHHHhhCcccCCCcEEEEEeCeEeEE-EEEECCC-CC-cEEEEecCCCCcEEEccCccc----------------
Confidence 366799999875221 223469999999973 3344321 13 88888876 2211010000
Q ss_pred EEEc-eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc---------ceEEEe-eeecEEEEeEE
Q 048431 122 SIIG-GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM---------YHIVIN-RCQDVLVEGAK 190 (396)
Q Consensus 122 ~I~G-g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~---------~~i~~~-~~~nv~i~n~~ 190 (396)
.+ |+ -...-.....+++..+|++|+|... ..+.+. ..+...+.+|.
T Consensus 147 --~~~gT---------------------~~SaTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~ 203 (379)
T PLN02304 147 --SANGT---------------------FYSASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCG 203 (379)
T ss_pred --CCCCc---------------------cceEEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEece
Confidence 00 00 0112233346778888888887631 223332 45677777777
Q ss_pred EEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC-----------ce-EEEeeccccCCC
Q 048431 191 IIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG-----------HG-ISIGSLAKDLDE 258 (396)
Q Consensus 191 i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-----------~g-i~igs~g~~~~~ 258 (396)
|.+..| -+... ..+-.++||.|...=|-|.- .-...+++|.+..- .| |.--+ +...
T Consensus 204 f~G~QD-----TLy~~-~gR~Yf~~CyIeG~VDFIFG---~g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~---Rt~~ 271 (379)
T PLN02304 204 FFGAQD-----TLHDD-RGRHYFKDCYIQGSIDFIFG---DARSLYENCRLISMANPVPPGSKSINGAVTAHG---RTSK 271 (379)
T ss_pred Eecccc-----eeEeC-CCCEEEEeeEEcccccEEec---cceEEEEccEEEEecCCcccccccCceEEEecC---CCCC
Confidence 776432 22211 23456777777765444322 23567777766421 12 21111 0011
Q ss_pred CCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeec
Q 048431 259 EGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQN 303 (396)
Q Consensus 259 ~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~ 303 (396)
..-....|.||++.+.. -+.++ +.-.....++|.+..|.+
T Consensus 272 ~~~~GfvF~~C~itg~g-~vyLG----RPW~pysrvVf~~t~m~~ 311 (379)
T PLN02304 272 DENTGFSFVNCTIGGTG-RIWLG----RAWRPYSRVVFAYTSMTD 311 (379)
T ss_pred CCCceEEEECCEEccCc-ceeec----CCCCCcceEEEEecccCC
Confidence 23346667777776532 12222 122334566666666654
No 58
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.65 E-value=0.0036 Score=63.98 Aligned_cols=201 Identities=12% Similarity=0.136 Sum_probs=105.2
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-.-||+||+++-.. ...-+|+|.+|+|.-.- .++.. |. +++|.++|. +...|.
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~V-~I~~~-k~-~i~l~G~g~----------------------~~tiIt 297 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKGVYKENI-DMKKK-KT-NIMLVGDGI----------------------GQTVVT 297 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCeeeEEE-eccCC-Cc-eEEEEEcCC----------------------CCeEEE
Confidence 466899999876322 22347999999996432 22210 12 788887761 011111
Q ss_pred c-e-EEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 G-G-ALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G-g-~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
+ . ..+| |.. .+ ..-.....+++..+|++|+|... ..+.+. ..+.+.+.+|.|.+..|
T Consensus 298 ~~~~~~~g-----~~T---------~~-saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QD- 361 (537)
T PLN02506 298 GNRNFMQG-----WTT---------FR-TATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQD- 361 (537)
T ss_pred eCccccCC-----CCc---------cc-ceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccc-
Confidence 1 0 0011 000 01 12334567888888999888632 233332 46778888888876433
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEeeE
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
-+.... .+-..+||.|...=|-|. |.-...++||.+..- .| |.-- +. .....-..+.|.||+
T Consensus 362 ----TLy~~~-~rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~r~~~~~~~~~iTA~--~r-~~~~~~~G~vf~~c~ 430 (537)
T PLN02506 362 ----TLYAHS-LRQFYRECEIYGTIDFIF---GNGAAVLQNCKIYTRVPLPLQKVTITAQ--GR-KSPHQSTGFSIQDSY 430 (537)
T ss_pred ----cceecC-CceEEEeeEEecccceEc---cCceeEEeccEEEEccCCCCCCceEEcc--CC-CCCCCCcEEEEEcCE
Confidence 222222 345777888876544332 223577788877421 12 2211 11 111223567788888
Q ss_pred EeCCccEEEEEeecCCCCceEEcEEEEeeEeec
Q 048431 271 FTGTTNGLRIKSWARPSNGFVRGIRFIDALMQN 303 (396)
Q Consensus 271 ~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~ 303 (396)
+.... ...++ +.-+....++|-+..|.+
T Consensus 431 i~~~~-~~yLG----RPW~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 431 VLATQ-PTYLG----RPWKQYSRTVFMNTYMSQ 458 (537)
T ss_pred EccCC-ceEEe----cCCCCCceEEEEecCCCC
Confidence 76542 22222 233345566677766655
No 59
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.61 E-value=0.0089 Score=61.68 Aligned_cols=210 Identities=13% Similarity=0.141 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-.-||+||+++-.. ...-+|+|.+|+|.- .+.++.. | ++++|.++|. ....|.
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~~-k-~~i~l~G~g~----------------------~~TiIt 324 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQGVYNE-KVDVTKK-M-THVTFIGDGP----------------------TKTKIT 324 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCceeEE-EEEecCC-C-CcEEEEecCC----------------------CceEEE
Confidence 466799999765221 123479999999974 3344321 1 2888888871 001111
Q ss_pred c--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 G--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
+ ..-+|. |.. .+. .-.....+++..+|++|.|... ..+.+. ..+...+.+|.|.+..|
T Consensus 325 ~~~~~~~g~----~~T---------~~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD- 389 (572)
T PLN02990 325 GSLNFYIGK----VKT---------YLT-ATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQD- 389 (572)
T ss_pred eccccCCCC----ccc---------eee-eEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccc-
Confidence 1 000000 000 011 2233456888888898888642 233333 56778888888887433
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC---ce--EEEeeccccCCCCCEEEEEEEeeEEe
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG---HG--ISIGSLAKDLDEEGVQNVTVFKTVFT 272 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~~~ni~i~n~~~~ 272 (396)
-+.... .+-.+++|.|...=|-|. |.-...++||.+... .| -.|=-.+ +.....-..+.|.||++.
T Consensus 390 ----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTAq~-r~~~~~~~G~vf~~C~it 460 (572)
T PLN02990 390 ----TLYVHS-HRQFFRDCTVSGTVDFIF---GDAKVVLQNCNIVVRKPMKGQSCMITAQG-RSDVRESTGLVLQNCHIT 460 (572)
T ss_pred ----hhccCC-CcEEEEeeEEecccceEc---cCceEEEEccEEEEecCCCCCceEEEeCC-CCCCCCCceEEEEeeEEe
Confidence 222222 345778888887555443 234678888877421 11 1110111 111223457788888887
Q ss_pred CCccEEE----EEeecCCCCceEEcEEEEeeEeecC
Q 048431 273 GTTNGLR----IKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 273 ~~~~gi~----i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
....... .+.+=|+.-.....++|.+..|.+.
T Consensus 461 ~~~~~~~~~~~~~~yLGRpW~~ysrvV~~~s~i~~~ 496 (572)
T PLN02990 461 GEPAYIPVKSINKAYLGRPWKEFSRTIIMGTTIDDV 496 (572)
T ss_pred cCccccccccccceEeecCCCCCceEEEEecccCCe
Confidence 7532111 1111122333455677777776653
No 60
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.60 E-value=0.0094 Score=61.76 Aligned_cols=206 Identities=14% Similarity=0.125 Sum_probs=113.9
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEee---EEEeeCCccccCCCcceEEEeceeeE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLING---TLVAPTDYRVLGQANNWLSFEGVSHV 121 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
+-.-||+||+++-.. ...-+|+|.+|+|.-. +.++.. |. +++|.++| ++..-.+ +.
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~G~g~~~TiIt~~~-----------------~~ 355 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQGIYDET-VTVDKK-MV-NVTMYGDGSQKTIVTGNK-----------------NF 355 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCCeeEEE-EEEcCC-Cc-eEEEEecCCCceEEEECC-----------------cc
Confidence 467899999765221 1234799999999743 334321 12 78888886 2211000 00
Q ss_pred EEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCC
Q 048431 122 SIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGD 196 (396)
Q Consensus 122 ~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~ 196 (396)
-+|.+ . . ...-.....+++..++++|+|... ..+.+. .++...+.+|.|.+..|
T Consensus 356 ------~~g~~-----T---------~-~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QD 414 (596)
T PLN02745 356 ------ADGVR-----T---------F-RTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQD 414 (596)
T ss_pred ------cCCCc-----c---------e-eeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccc
Confidence 00100 0 0 112233467888999999988532 233333 56888999999987543
Q ss_pred CCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEee
Q 048431 197 SPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKT 269 (396)
Q Consensus 197 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~ 269 (396)
-+... ..+-.++||+|...=|-|. + .-...++||.+... .| |.-.+ +.+...-..+.|.||
T Consensus 415 -----TLy~~-~~Rqyy~~C~I~GtVDFIF-G--~a~avf~~C~i~~~~~~~~~~~~iTAq~---r~~~~~~~Gfvf~~c 482 (596)
T PLN02745 415 -----TLYAQ-THRQFYRSCVITGTIDFIF-G--DAAAIFQNCLIFVRKPLPNQQNTVTAQG---RVDKFETTGIVLQNC 482 (596)
T ss_pred -----ccccC-CCcEEEEeeEEEeeccEEe-c--ceeEEEEecEEEEecCCCCCCceEEecC---CCCCCCCceEEEEee
Confidence 22222 2456888899887655332 2 34788888887531 12 22211 111233467889999
Q ss_pred EEeCCccEEE----EEeecCCCCceEEcEEEEeeEeecC
Q 048431 270 VFTGTTNGLR----IKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 270 ~~~~~~~gi~----i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
++........ .+.+=|+.-.....++|.+..|.+.
T Consensus 483 ~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~~ 521 (596)
T PLN02745 483 RIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIEDV 521 (596)
T ss_pred EEecCccccccccccceeccCCCCCCccEEEEecccCCe
Confidence 9887532111 1122233344456777777777653
No 61
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.59 E-value=0.012 Score=59.92 Aligned_cols=207 Identities=14% Similarity=0.153 Sum_probs=112.5
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-..||+||+++-.. ...-+|+|.+|+|.- .+.++.. | ++++|.++|. +...|.
T Consensus 217 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k-~~i~l~G~g~----------------------~~TiIt 271 (520)
T PLN02201 217 NFTTIMDAVLAAPDYSTKRYVIYIKKGVYLE-NVEIKKK-K-WNIMMVGDGI----------------------DATVIT 271 (520)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCceeEE-EEEecCC-C-ceEEEEecCC----------------------CCcEEE
Confidence 477899999765221 223579999999973 3344321 1 2788888762 001111
Q ss_pred c--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 G--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
+ ...|| |... ...-.....+++..+|++|.|... ..+.+. ..+...+.+|.|.+..
T Consensus 272 ~~~~~~~g-----~~T~----------~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q-- 334 (520)
T PLN02201 272 GNRSFIDG-----WTTF----------RSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ-- 334 (520)
T ss_pred eCCccCCC-----Cccc----------ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC--
Confidence 1 00011 0000 112234457888888999888632 234443 4678888888888743
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEeeE
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
|-+.... .+-..++|+|...=|-|. |.-...++||.+..- .| |.--+ +.....-..+.|.||+
T Consensus 335 ---DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTAq~---r~~~~~~~Gfvf~~C~ 404 (520)
T PLN02201 335 ---DTLYTHT-MRQFYRECRITGTVDFIF---GDATAVFQNCQILAKKGLPNQKNTITAQG---RKDPNQPTGFSIQFSN 404 (520)
T ss_pred ---CeeEeCC-CCEEEEeeEEeecccEEe---cCceEEEEccEEEEecCCCCCCceEEecC---CCCCCCCcEEEEEeeE
Confidence 3333222 345778888887655443 234688888877531 12 33211 1112334578888888
Q ss_pred EeCCccEEE----EEeecCCCCceEEcEEEEeeEeecC
Q 048431 271 FTGTTNGLR----IKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 271 ~~~~~~gi~----i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
+........ .+.+=|+.-+....++|-+..|.+.
T Consensus 405 it~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~l~~~ 442 (520)
T PLN02201 405 ISADTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSDA 442 (520)
T ss_pred EecCccccccccccceEeecCCCCCceEEEEecCcCCe
Confidence 876432110 0111122334456677777777654
No 62
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.57 E-value=0.0094 Score=62.26 Aligned_cols=209 Identities=11% Similarity=0.089 Sum_probs=118.1
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-.-||+||+++-.. ...-+|+|.+|+|.-. +.++.. |. +++|.++|. +...|.
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~Gdg~----------------------~~TiIt 315 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAGIYKEY-VQVNRS-MT-HLVFIGDGP----------------------DKTVIS 315 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCCceEEE-EEEcCC-CC-cEEEEecCC----------------------CCeEEE
Confidence 467899999765221 1234799999999643 333221 12 777877761 111111
Q ss_pred ce--EEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 GG--ALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 Gg--~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
|. .-||.+ . .+. .-.....+++..+|++|+|... ..+.+. ..+...+.+|.|.+..|
T Consensus 316 ~~~~~~dg~~-----T---------~~S-AT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD- 379 (670)
T PLN02217 316 GSKSYKDGIT-----T---------YKT-ATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQD- 379 (670)
T ss_pred cCCccCCCCC-----c---------cce-EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccc-
Confidence 10 001100 0 011 2233457889999999998643 334443 57899999999997443
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC-----ceEEEeeccccCCCCCEEEEEEEeeEEe
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG-----HGISIGSLAKDLDEEGVQNVTVFKTVFT 272 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~~~ni~i~n~~~~ 272 (396)
-+.... .+-.+++|+|...=|-|. |....+++||.+... ..-.|=-.| +.+...-..+.|.||++.
T Consensus 380 ----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~I~~r~~~~~~~~~ITAqg-r~~~~~~tGfvf~~C~i~ 450 (670)
T PLN02217 380 ----TLYAHS-HRQFYRDCTISGTIDFLF---GDAAAVFQNCTLLVRKPLLNQACPITAHG-RKDPRESTGFVLQGCTIV 450 (670)
T ss_pred ----hhccCC-CcEEEEeCEEEEeccEEe---cCceEEEEccEEEEccCCCCCceeEecCC-CCCCCCCceEEEEeeEEe
Confidence 232222 456889999997655443 234789999988632 111221111 112234568999999999
Q ss_pred CCccEEE----EEeecCCCCceEEcEEEEeeEeecC
Q 048431 273 GTTNGLR----IKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 273 ~~~~gi~----i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
....-+. .+.+=|+.......++|.+..|.+.
T Consensus 451 ~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 451 GEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred cCccccccccccceeeccCCCCCceEEEEecccCCe
Confidence 8642111 1111133445567788888887764
No 63
>PLN02432 putative pectinesterase
Probab=97.56 E-value=0.014 Score=55.17 Aligned_cols=199 Identities=16% Similarity=0.119 Sum_probs=99.6
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-.-||+||+++-.. ...-+|+|.+|+|.-. +.++.. |. +++|.+++. ++..|.
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~-V~ip~~-k~-~itl~G~~~----------------------~~TvI~ 76 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPGIYREK-VVVPAD-KP-FITLSGTQA----------------------SNTIIT 76 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCceeEEE-EEEecc-Cc-eEEEEEcCC----------------------CCeEEE
Confidence 477899999876221 1234799999999532 334211 12 777777651 111111
Q ss_pred ceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc---ceEEEe-eeecEEEEeEEEEcCCCCCCC
Q 048431 125 GGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM---YHIVIN-RCQDVLVEGAKIIAAGDSPNT 200 (396)
Q Consensus 125 Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~---~~i~~~-~~~nv~i~n~~i~~~~~~~~~ 200 (396)
.. ++.+ . . +. .-.....+++..+|++|+|... ..+.+. ..+...+.+|.|.+..
T Consensus 77 ~~--~~~~-----~--------~-~s-aT~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~Q----- 134 (293)
T PLN02432 77 WN--DGGD-----I--------F-ES-PTLSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQ----- 134 (293)
T ss_pred ec--CCcc-----c--------c-cc-eEEEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEeccc-----
Confidence 10 0000 0 0 01 1223346788888888887632 223332 4567777777777633
Q ss_pred CCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeC---Cce-EEEeeccccCCCCCEEEEEEEeeEEeCCcc
Q 048431 201 DGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGP---GHG-ISIGSLAKDLDEEGVQNVTVFKTVFTGTTN 276 (396)
Q Consensus 201 DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~---~~g-i~igs~g~~~~~~~~~ni~i~n~~~~~~~~ 276 (396)
|-+-.. ..+-.++||.|...=|-|. + .-...+++|.+.. ..| +.--+. .....-....|.||++.+..
T Consensus 135 DTLy~~-~gr~yf~~c~I~G~VDFIF-G--~g~a~Fe~c~i~s~~~~~g~itA~~r---~~~~~~~Gfvf~~c~itg~g- 206 (293)
T PLN02432 135 DTLLDD-TGRHYYRNCYIEGATDFIC-G--NAASLFEKCHLHSLSPNNGAITAQQR---TSASENTGFTFLGCKLTGAG- 206 (293)
T ss_pred ceeEEC-CCCEEEEeCEEEecccEEe-c--CceEEEEeeEEEEecCCCCeEEecCC---CCCCCCceEEEEeeEEcccc-
Confidence 222222 2345677777776555443 2 2357777777642 123 222110 01122235677777776532
Q ss_pred EEEEEeecCCCCceEEcEEEEeeEeec
Q 048431 277 GLRIKSWARPSNGFVRGIRFIDALMQN 303 (396)
Q Consensus 277 gi~i~~~~~~~~g~v~nI~~~ni~~~~ 303 (396)
...+ |+.-+....++|.|..|.+
T Consensus 207 ~~yL----GRpW~~~srvvf~~t~l~~ 229 (293)
T PLN02432 207 TTYL----GRPWGPYSRVVFALSYMSS 229 (293)
T ss_pred hhhc----cCCCCCccEEEEEecccCC
Confidence 1112 2223334566677766654
No 64
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.56 E-value=0.011 Score=60.45 Aligned_cols=209 Identities=13% Similarity=0.126 Sum_probs=114.3
Q ss_pred cHHHHHHHHHHHhh---cCCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEE
Q 048431 46 STQAFAKAWAAACA---SNESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVS 122 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~---~~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~ 122 (396)
+-.-||+||+++-. ....-+|+|.+|+|.-. +.++.. |. +++|.++|. +...
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~----------------------~~Tv 288 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRLN-ND-DIMLVGDGM----------------------RSTI 288 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecCC-CC-cEEEEEcCC----------------------CCeE
Confidence 46789999986521 12245799999999753 333221 12 888888872 0011
Q ss_pred EEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 123 IIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 123 I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
|.|..--+.+ |.. -...-.....+++..++++|.|... ..+.+. ..+...+.+|+|.+..|.
T Consensus 289 It~~~~~~~~---~~T----------~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDT 355 (539)
T PLN02995 289 ITGGRSVKGG---YTT----------YNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDT 355 (539)
T ss_pred EEeCCccCCC---Ccc----------cceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccch
Confidence 1110000000 000 0112233457888888999888632 334443 567888999999875432
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEeeE
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
+.... .+-..+||+|...=|-|.- ....++++|.+... .| |.-- + +.....-..+.|.||+
T Consensus 356 -----Ly~~~-~Rqyy~~C~I~GtVDFIFG---~a~avf~~C~i~~~~~~~~~~~~iTA~--~-r~~~~~~~G~vf~~c~ 423 (539)
T PLN02995 356 -----LMVHS-QRQFYRECYIYGTVDFIFG---NAAAVFQNCIILPRRPLKGQANVITAQ--G-RADPFQNTGISIHNSR 423 (539)
T ss_pred -----hccCC-CceEEEeeEEeeccceEec---ccceEEeccEEEEecCCCCCcceEecC--C-CCCCCCCceEEEEeeE
Confidence 22222 3457888999876554432 34788888887532 12 2211 1 1112334688899999
Q ss_pred EeCCccEE----EEEeecCCCCceEEcEEEEeeEeecC
Q 048431 271 FTGTTNGL----RIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 271 ~~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
+....... ..+.+=|+.-+....++|-+..|.+.
T Consensus 424 i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~ 461 (539)
T PLN02995 424 ILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNV 461 (539)
T ss_pred EecCCcccccccccceeccCCCCCCcceEEEeccccCc
Confidence 98753211 11122232334455678888887654
No 65
>PLN02671 pectinesterase
Probab=97.55 E-value=0.021 Score=55.38 Aligned_cols=208 Identities=15% Similarity=0.164 Sum_probs=109.0
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACASN-ESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~~-~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
|-.-||+||+++-... ..-+|+|.||+|.-. +.++.. |. +++|.++|.- ..+..|.
T Consensus 70 df~TIQ~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~I~~~-k~-~Itl~G~g~~--------------------~~~TvIt 126 (359)
T PLN02671 70 DSLTVQGAVDMVPDYNSQRVKIYILPGIYREK-VLVPKS-KP-YISFIGNESR--------------------AGDTVIS 126 (359)
T ss_pred CccCHHHHHHhchhcCCccEEEEEeCceEEEE-EEECCC-CC-eEEEEecCCC--------------------CCCEEEE
Confidence 4678999998762221 234799999999733 334211 12 7888776510 0111111
Q ss_pred c----eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc--------ceEEEe-eeecEEEEeEEE
Q 048431 125 G----GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM--------YHIVIN-RCQDVLVEGAKI 191 (396)
Q Consensus 125 G----g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~--------~~i~~~-~~~nv~i~n~~i 191 (396)
. +.....|.. | ......-.....+++..+|++|.|... ..+.+. ..+.+.+.+|+|
T Consensus 127 ~~~~a~~~~~~g~~-~----------gT~~SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f 195 (359)
T PLN02671 127 WNDKASDLDSNGFE-L----------GTYRTASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRV 195 (359)
T ss_pred cCCcccccccCCcc-c----------cceeeEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceE
Confidence 1 000001100 0 001112334556888888888888721 223332 467888888888
Q ss_pred EcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC---ce-EEEeeccccCCCCCEEEEEEE
Q 048431 192 IAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG---HG-ISIGSLAKDLDEEGVQNVTVF 267 (396)
Q Consensus 192 ~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~g-i~igs~g~~~~~~~~~ni~i~ 267 (396)
.+..| -+... ..+-.++||.|...=|-|. + .-...+++|.+... .| |.--+.. ....-....|.
T Consensus 196 ~G~QD-----TLy~~-~gR~yf~~CyIeG~VDFIF-G--~g~A~Fe~C~I~s~~~~~G~ITA~~r~---~~~~~~GfvF~ 263 (359)
T PLN02671 196 LGAQD-----TLLDE-TGSHYFYQCYIQGSVDFIF-G--NAKSLYQDCVIQSTAKRSGAIAAHHRD---SPTEDTGFSFV 263 (359)
T ss_pred ecccc-----ccEeC-CCcEEEEecEEEEeccEEe-c--ceeEEEeccEEEEecCCCeEEEeeccC---CCCCCccEEEE
Confidence 86433 22222 2346778888887655443 2 23678888877531 23 3322210 11223467888
Q ss_pred eeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 268 KTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 268 n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
||++.+.. .+.+. +.-+....++|.|..|.+.
T Consensus 264 ~C~itg~g-~vyLG----RPW~~yarvVf~~t~m~~~ 295 (359)
T PLN02671 264 NCVINGTG-KIYLG----RAWGNYSRTVYSNCFIADI 295 (359)
T ss_pred ccEEccCc-cEEEe----CCCCCCceEEEEecccCCe
Confidence 88887642 22332 1222345677777777653
No 66
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.53 E-value=0.0084 Score=61.47 Aligned_cols=208 Identities=14% Similarity=0.161 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACASN-ESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~~-~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-.-||+||+++-... ..-+|+|.+|+|.- .+.++.. |. +++|.++|. +...|.
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~~-k~-~i~l~G~g~----------------------~~TiIt 295 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREGVYEE-NVEIPIY-KT-NIVLIGDGS----------------------DVTFIT 295 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCceeEE-EEecCCC-Cc-cEEEEecCC----------------------CceEEe
Confidence 4678999997652221 22468999999963 3333211 12 788888762 001111
Q ss_pred c--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 G--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
+ -..|| |.. .+. .-.....+++..+|++|.|... ..+.+. ..+...+.+|+|.+..|
T Consensus 296 ~~~~~~~g-----~~T---------~~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD- 359 (541)
T PLN02416 296 GNRSVVDG-----WTT---------FRS-ATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQD- 359 (541)
T ss_pred CCCccCCC-----CCc---------cce-EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccc-
Confidence 1 00011 100 011 2233346888888888887632 223332 45677777777776433
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC---ce--EEEeeccccCCCCCEEEEEEEeeEEe
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG---HG--ISIGSLAKDLDEEGVQNVTVFKTVFT 272 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~~~ni~i~n~~~~ 272 (396)
-+... +.+-.++||.|...=|-|. |.-...++||.+... .| -.| ....+.....-..+.|.||++.
T Consensus 360 ----TLy~~-~~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~ 430 (541)
T PLN02416 360 ----TLYVH-SFRQFYRECDIYGTIDYIF---GNAAVVFQACNIVSKMPMPGQFTVI-TAQSRDTPDEDTGISIQNCSIL 430 (541)
T ss_pred ----hhccC-CCceEEEeeEEeeccceee---ccceEEEeccEEEEecCCCCCceEE-ECCCCCCCCCCCEEEEEeeEEe
Confidence 22221 2345677777776544332 223677777766421 11 111 1110111122346677777776
Q ss_pred CCccEE----EEEeecCCCCceEEcEEEEeeEeec
Q 048431 273 GTTNGL----RIKSWARPSNGFVRGIRFIDALMQN 303 (396)
Q Consensus 273 ~~~~gi----~i~~~~~~~~g~v~nI~~~ni~~~~ 303 (396)
...... ..+.+=|+.-.....++|.+..|.+
T Consensus 431 ~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~ 465 (541)
T PLN02416 431 ATEDLYSNSNSVKSYLGRPWRVYSRTVVLESYIDD 465 (541)
T ss_pred cCCccccccccccccccCCCCCCccEEEEecccCC
Confidence 543211 1111212233334556666666654
No 67
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.52 E-value=0.014 Score=58.73 Aligned_cols=206 Identities=14% Similarity=0.117 Sum_probs=101.0
Q ss_pred ccHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEee---EEEeeCCccccCCCcceEEEeceee
Q 048431 45 DSTQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLING---TLVAPTDYRVLGQANNWLSFEGVSH 120 (396)
Q Consensus 45 d~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 120 (396)
-+-.-||+||+++-.. ...-+|+|.+|+|.-. +.++.. |. +++|.++| ++..-++ +
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-nItliGdg~~~TiIt~n~-----------------~ 266 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDEI-VRIGST-KP-NLTLIGDGQDSTIITGNL-----------------S 266 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCCeeEEE-EEecCC-Cc-cEEEEecCCCceEEEEcc-----------------c
Confidence 3466799999766221 1234799999999743 344321 12 88888876 2211000 0
Q ss_pred EEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCC
Q 048431 121 VSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAG 195 (396)
Q Consensus 121 v~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~ 195 (396)
.-+|.. . . ...-.....+++..++++++|... ..+.+. .++...+.+|.|.+..
T Consensus 267 ------~~~g~~-T-------------~-~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQ 325 (509)
T PLN02488 267 ------ASNGKR-T-------------F-YTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQ 325 (509)
T ss_pred ------ccCCCC-c-------------e-eeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccC
Confidence 001100 0 0 112233346777888888887532 233333 4567777777777633
Q ss_pred CCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEe
Q 048431 196 DSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFK 268 (396)
Q Consensus 196 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n 268 (396)
| -+... +.+-.+++|.|...=|-|. |.-...++||.+..- .+ |.-.+ +.....-..+.|.|
T Consensus 326 D-----TLy~~-~~RqyyrdC~I~GtVDFIF---G~a~avFq~C~I~sr~~~~~~~~~ITAq~---R~~~~~~tGfvf~~ 393 (509)
T PLN02488 326 D-----ALYPH-RDRQFYRECFITGTVDFIC---GNAAAVFQFCQIVARQPMMGQSNVITAQS---RESKDDNSGFSIQK 393 (509)
T ss_pred c-----ceeeC-CCCEEEEeeEEeeccceEe---cceEEEEEccEEEEecCCCCCCEEEEeCC---CCCCCCCcEEEEEe
Confidence 2 22222 2345667777776544332 233667777766421 12 11111 11112234567777
Q ss_pred eEEeCCccEE----EEEeecCCCCceEEcEEEEeeEeec
Q 048431 269 TVFTGTTNGL----RIKSWARPSNGFVRGIRFIDALMQN 303 (396)
Q Consensus 269 ~~~~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~~~~ 303 (396)
|++....... ..+.+=|+.-.....++|-+..|.+
T Consensus 394 C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~ 432 (509)
T PLN02488 394 CNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGD 432 (509)
T ss_pred eEEecCCcccccccccceeecCCCCCCccEEEEeccCCC
Confidence 7776643211 0111212233334555565555554
No 68
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.52 E-value=0.014 Score=59.96 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=112.7
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACASN-ESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~~-~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-..||+||+++-... ..-+|+|.+|+|.- .+.++.. |. +++|.++|. +...|.
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E-~V~i~~~-k~-~i~l~G~g~----------------------~~TiIt 301 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKGTYKE-NVEIGKK-KK-NLMLVGDGM----------------------DSTIIT 301 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCceeeE-EEEecCC-Cc-eEEEEecCC----------------------CCcEEE
Confidence 4678999998763221 22479999999974 3334321 12 788888761 001111
Q ss_pred c--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 G--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
| -..||.+ .-...-.....+++..+|++++|... ..+.+. .++...+.+|.|.+..|
T Consensus 302 ~~~~~~dg~~---------------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD- 365 (548)
T PLN02301 302 GSLNVIDGST---------------TFRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD- 365 (548)
T ss_pred eCCccCCCCC---------------ceeeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc-
Confidence 1 0001110 00112334456888889999988632 234333 56788889999887443
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEeeE
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
-+.... .+-..+||.|...=|-|. |.-...++||.+..- .+ +.--+ +.+...-..+.|.||+
T Consensus 366 ----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTAqg---r~~~~~~tG~vf~~c~ 434 (548)
T PLN02301 366 ----TLYAHS-LRQFYRDSYITGTVDFIF---GNAAVVFQNCKIVARKPMAGQKNMVTAQG---RTDPNQNTGISIQKCD 434 (548)
T ss_pred ----cceecC-CcEEEEeeEEEeccceec---ccceeEEeccEEEEecCCCCCCceEEecC---CCCCCCCCEEEEEeeE
Confidence 232222 345788888887655443 234788888887431 12 32211 1122334578888998
Q ss_pred EeCCccEE----EEEeecCCCCceEEcEEEEeeEeecC
Q 048431 271 FTGTTNGL----RIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 271 ~~~~~~gi----~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
+....... ..+.+=|+.-.....++|.+..|.+.
T Consensus 435 i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~ 472 (548)
T PLN02301 435 IIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDDH 472 (548)
T ss_pred EecCccccccccccceeeecCCCCCceEEEEecccCCe
Confidence 88753211 01111122334456677777776653
No 69
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.50 E-value=0.012 Score=61.02 Aligned_cols=178 Identities=16% Similarity=0.165 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-..||+||+++-.. ...-+|||.+|+|.-. +.++.. |. |++|.++|. +...|.
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E~-V~i~~~-k~-ni~l~Gdg~----------------------~~TiIt 340 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAGVYREN-VEVTKK-KK-NIMFLGDGR----------------------GKTIIT 340 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCceeEEE-EEeCCC-CC-eEEEEecCC----------------------CccEEE
Confidence 467899999766221 1224799999999743 233211 12 788888762 111111
Q ss_pred c--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 G--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
| -..||.. . .+ ..-.....+++..+|++|+|... ..+.+. ..+...+.+|.|.+..|
T Consensus 341 ~~~~~~~g~~-t-------------~~-sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QD- 404 (587)
T PLN02313 341 GSRNVVDGST-T-------------FH-SATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQD- 404 (587)
T ss_pred eCCcccCCCC-c-------------ee-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccc-
Confidence 1 0111110 0 01 12233456788888888887632 233332 45677777777776432
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEeeE
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
-+...+ .+-..++|.|...=|-|. |.....++||.+... .+ +.- .| +.+...-..+.|.||+
T Consensus 405 ----TLy~~~-~rq~y~~c~I~GtvDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTA--qg-r~~~~~~tG~v~~~c~ 473 (587)
T PLN02313 405 ----TLYVHS-NRQFFVKCHITGTVDFIF---GNAAAVLQDCDINARRPNSGQKNMVTA--QG-RSDPNQNTGIVIQNCR 473 (587)
T ss_pred ----hhccCC-CcEEEEeeEEeeccceec---cceeEEEEccEEEEecCCCCCcceEEe--cC-CCCCCCCceEEEEecE
Confidence 222222 344677777776544442 233677777776421 11 211 11 1112234567777777
Q ss_pred EeCCc
Q 048431 271 FTGTT 275 (396)
Q Consensus 271 ~~~~~ 275 (396)
+....
T Consensus 474 i~~~~ 478 (587)
T PLN02313 474 IGGTS 478 (587)
T ss_pred EecCC
Confidence 76643
No 70
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.47 E-value=0.076 Score=51.66 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=81.7
Q ss_pred EEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCc-eEEEe-ceeecccCCCCcEEEEEee-EEEeeC-Ccccc
Q 048431 31 YNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKG-RYLLG-SVAFRSECKSPSITFLING-TLVAPT-DYRVL 106 (396)
Q Consensus 31 ~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G-~Y~~~-~l~l~~~~~~~n~~l~~~G-~l~~~~-~~~~~ 106 (396)
-.|+.|=+.|+. | +++||+.- .+|.+-|| +|.+. ++.+++ ...|.+.| +++... +...+
T Consensus 44 Eqvkt~~~~P~e--D----le~~I~~h------aKVaL~Pg~~Y~i~~~V~I~~-----~cYIiGnGA~V~v~~~~~~~f 106 (386)
T PF01696_consen 44 EQVKTYWMEPGE--D----LEEAIRQH------AKVALRPGAVYVIRKPVNIRS-----CCYIIGNGATVRVNGPDRVAF 106 (386)
T ss_pred EeEEEEEcCCCc--C----HHHHHHhc------CEEEeCCCCEEEEeeeEEecc-----eEEEECCCEEEEEeCCCCceE
Confidence 345556666652 3 44555432 25777776 69874 788886 68888887 343321 11111
Q ss_pred C----CCcceEEEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeee
Q 048431 107 G----QANNWLSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQ 182 (396)
Q Consensus 107 ~----~~~~~i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~ 182 (396)
. ...+. +.+..+|++..=.+++.+ ....+.|....++.+.|+.+.+...-.+... .
T Consensus 107 ~v~~~~~~P~--V~gM~~VtF~ni~F~~~~----------------~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~--~ 166 (386)
T PF01696_consen 107 RVCMQSMGPG--VVGMEGVTFVNIRFEGRD----------------TFSGVVFHANTNTLFHGCSFFGFHGTCLESW--A 166 (386)
T ss_pred EEEcCCCCCe--EeeeeeeEEEEEEEecCC----------------ccceeEEEecceEEEEeeEEecCcceeEEEc--C
Confidence 1 00111 112344444432222221 1224455555666666666665554444333 3
Q ss_pred cEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCc
Q 048431 183 DVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGH 245 (396)
Q Consensus 183 nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~ 245 (396)
...+++|++.+-+ -|+.-.+-..+.|++|.|..--=||... .+..|++|.+....
T Consensus 167 ~~~VrGC~F~~C~-----~gi~~~~~~~lsVk~C~FekC~igi~s~---G~~~i~hn~~~ec~ 221 (386)
T PF01696_consen 167 GGEVRGCTFYGCW-----KGIVSRGKSKLSVKKCVFEKCVIGIVSE---GPARIRHNCASECG 221 (386)
T ss_pred CcEEeeeEEEEEE-----EEeecCCcceEEeeheeeeheEEEEEec---CCeEEecceecccc
Confidence 5566666665422 2333333345555666655432222222 24555555554443
No 71
>PLN02197 pectinesterase
Probab=97.41 E-value=0.019 Score=59.34 Aligned_cols=210 Identities=12% Similarity=0.075 Sum_probs=110.6
Q ss_pred cHHHHHHHHHHHhhcC-CCcEEEecCceEEEeceeecccCCCCcEEEEEee---EEEeeCCccccCCCcceEEEeceeeE
Q 048431 46 STQAFAKAWAAACASN-ESATIYVPKGRYLLGSVAFRSECKSPSITFLING---TLVAPTDYRVLGQANNWLSFEGVSHV 121 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~~-~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 121 (396)
|-.-||+||+++-... ..-+|+|.+|+|.-. +.++.. |. +++|.++| ++..-++ ++
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-ni~l~G~g~~~TiIt~~~-----------------~~ 345 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAGIYNEQ-VTIPKK-KN-NIFMFGDGARKTVISYNR-----------------SV 345 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCceEEEE-EEccCC-Cc-eEEEEEcCCCCeEEEecc-----------------cc
Confidence 4668999997652211 223699999999743 334321 12 88888876 2211100 00
Q ss_pred EEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCC
Q 048431 122 SIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGD 196 (396)
Q Consensus 122 ~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~ 196 (396)
.. .+|.. . .+. .-.....+++..++++|+|... ..+.+. ..+...+.+|.|.+..
T Consensus 346 ~~----~~g~~-----T---------~~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ- 405 (588)
T PLN02197 346 KL----SPGTT-----T---------SLS-GTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ- 405 (588)
T ss_pred cc----CCCCc-----c---------cce-eEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC-
Confidence 00 01100 0 011 2233457888899999988532 334443 5678888888888743
Q ss_pred CCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC---ce--EEEeeccccCC-CCCEEEEEEEeeE
Q 048431 197 SPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG---HG--ISIGSLAKDLD-EEGVQNVTVFKTV 270 (396)
Q Consensus 197 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~g--i~igs~g~~~~-~~~~~ni~i~n~~ 270 (396)
|-+.... .+-.++||+|...=|-|. |..-..++||.+... .| -.| ....+.+ ...-..+.|.||+
T Consensus 406 ----DTLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~ 476 (588)
T PLN02197 406 ----DTLYVNN-GRQFYRNIVVSGTVDFIF---GKSATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCR 476 (588)
T ss_pred ----cceEecC-CCEEEEeeEEEecccccc---cceeeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccE
Confidence 3333222 345788888886544332 223588888877421 11 112 1111111 1234578888888
Q ss_pred EeCCccE----EEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 271 FTGTTNG----LRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 271 ~~~~~~g----i~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
+...... ...+.+=|+.-.....++|-+..|.+.
T Consensus 477 it~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~~ 514 (588)
T PLN02197 477 IVPDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGDL 514 (588)
T ss_pred EecCCcccccccccccccCCCCCCCceEEEEecccCCe
Confidence 8875321 111222232334456677777777653
No 72
>PLN02314 pectinesterase
Probab=97.40 E-value=0.018 Score=59.75 Aligned_cols=206 Identities=13% Similarity=0.155 Sum_probs=110.0
Q ss_pred cHHHHHHHHHHHhhc-CCCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEE
Q 048431 46 STQAFAKAWAAACAS-NESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSII 124 (396)
Q Consensus 46 ~t~aiq~Ai~~a~~~-~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~ 124 (396)
+-.-||+||+++-.. ...-+|+|.+|+|.- .+.++.. |. |++|.++|. +...|.
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~E-~V~i~~~-k~-~i~l~G~g~----------------------~~tiIt 343 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEGTYVE-NVLLDKS-KW-NVMIYGDGK----------------------DKTIIS 343 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCceEEE-EEEecCC-Cc-eEEEEecCC----------------------CCcEEE
Confidence 466799999765221 123479999999974 3333221 12 788888761 001111
Q ss_pred c--eEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCC
Q 048431 125 G--GALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDS 197 (396)
Q Consensus 125 G--g~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 197 (396)
| -..||.. .+ + ..-.....+++..++++|.|... ..+.+. ..+...+.+|.|.+..|
T Consensus 344 ~~~~~~~g~~-t~-------------~-saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QD- 407 (586)
T PLN02314 344 GSLNFVDGTP-TF-------------S-TATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQD- 407 (586)
T ss_pred ecCCcCCCCC-cc-------------c-eEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccc-
Confidence 1 0011111 00 1 12233457888888888888632 233333 56778888888887433
Q ss_pred CCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCC------ce-EEEeeccccCCCCCEEEEEEEeeE
Q 048431 198 PNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPG------HG-ISIGSLAKDLDEEGVQNVTVFKTV 270 (396)
Q Consensus 198 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~g~~~~~~~~~ni~i~n~~ 270 (396)
-+.... .+-..+||.|...=|-|. |.-...++||.+... .+ |.-- + +.+...-..+.|.||+
T Consensus 408 ----TLy~~~-~rq~y~~C~I~GtvDFIF---G~a~avf~~c~i~~~~~~~~~~~~iTA~--~-r~~~~~~~G~vf~~c~ 476 (586)
T PLN02314 408 ----TLYAHS-NRQFYRDCDITGTIDFIF---GNAAVVFQNCNIQPRQPLPNQFNTITAQ--G-KKDPNQNTGISIQRCT 476 (586)
T ss_pred ----hheeCC-CCEEEEeeEEEeccceec---cCceeeeeccEEEEecCCCCCCceEecC--C-CCCCCCCCEEEEEeeE
Confidence 232222 345778888887545442 234688888887531 12 2211 1 1112334577888888
Q ss_pred EeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 271 FTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 271 ~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
+..... +..+.+=|+.-.....++|.+..|.+.
T Consensus 477 i~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 477 ISAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred EecCCc-ccccccccCCCCCCceEEEEecccCCc
Confidence 887542 111122122333345567777777654
No 73
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.06 E-value=0.0096 Score=53.35 Aligned_cols=118 Identities=17% Similarity=0.201 Sum_probs=68.9
Q ss_pred EeecCeEEEEEEEec---------------CCcceEEEeeeecEEEEeEEEEcCCC---CCCCCC-eeee-ceeeEEEEe
Q 048431 156 TKSNNIRINGLLSLN---------------SQMYHIVINRCQDVLVEGAKIIAAGD---SPNTDG-IHVQ-QSRNVIIKS 215 (396)
Q Consensus 156 ~~~~nv~i~~~~i~~---------------~~~~~i~~~~~~nv~i~n~~i~~~~~---~~~~DG-i~~~-~s~nv~I~n 215 (396)
..++||.|++++++. .....+.+..+++|.|++|++..... ....|| +++. .+++|||.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 367888888888877 24456888899999999999997511 112555 4664 589999999
Q ss_pred cEEecCCceEEeCCC-------CccEEEEeeeEeCCceEEEeeccccCCCCCEEEEEEEeeEEeC-CccEEEEE
Q 048431 216 SSIKTGDDCISIGPG-------TNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNVTVFKTVFTG-TTNGLRIK 281 (396)
Q Consensus 216 ~~i~~~dD~i~i~~~-------~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~-~~~gi~i~ 281 (396)
|.|.+.+.+..+++. ..++++.+|.+....+ + ......-.+++-|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~-R-------~P~~r~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNS-R-------NPRVRFGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE---------TTEECSCEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhh-C-------CCcccccEEEEEEeeeECCCCEEEEcc
Confidence 999875444333331 2578888888753211 0 000011257777887655 44555444
No 74
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.013 Score=55.19 Aligned_cols=112 Identities=12% Similarity=0.122 Sum_probs=55.7
Q ss_pred EEEeceeeEEEEceEEeCCCCCcccccccCCCCCCCCceEEEEEeecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEE
Q 048431 113 LSFEGVSHVSIIGGALDAKGTSLWACKTAAGSNCPNGATTLSITKSNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKII 192 (396)
Q Consensus 113 i~~~~~~nv~I~Gg~idg~g~~~w~~~~~~~~~~~~~p~~i~~~~~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~ 192 (396)
+.+.+..++.|+|-++.|... -....|...|++.+++...|.+-.|.-. .+++..+.+++..+++.+++
T Consensus 123 i~l~~s~d~~i~~n~i~G~~~----------~r~~~rGnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~~ 191 (408)
T COG3420 123 IYLHGSADVRIEGNTIQGLAD----------LRVAERGNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRFR 191 (408)
T ss_pred EEEeccCceEEEeeEEeeccc----------cchhhccCceEEEcCCCcEEEcCccccc-cceEEEcccccceecccchh
Confidence 444556666666633333222 1122344566666666666666555332 24555555555555555555
Q ss_pred cCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeE
Q 048431 193 AAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTC 241 (396)
Q Consensus 193 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~ 241 (396)
. -.-|.|...+.+..|+++..+...-+.++.- +++++|+++..
T Consensus 192 ~-----~RygvHyM~t~~s~i~dn~s~~N~vG~ALMy-s~~l~V~~nrS 234 (408)
T COG3420 192 D-----LRYGVHYMYTNDSRISDNSSRDNRVGYALMY-SDRLKVSDNRS 234 (408)
T ss_pred h-----eeeeEEEEeccCcEeecccccCCcceEEEEE-eccEEEEcCcc
Confidence 3 1234454445555555555444444444444 44555555544
No 75
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.76 E-value=0.003 Score=43.97 Aligned_cols=43 Identities=33% Similarity=0.315 Sum_probs=25.3
Q ss_pred ccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCceEEEeceeeccc
Q 048431 38 AKGNGITDSTQAFAKAWAAACASNESATIYVPKGRYLLGSVAFRSE 83 (396)
Q Consensus 38 a~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~~~l~l~~~ 83 (396)
|++||.+|||+||.++|++. +.|..|---.-||.+.+|.=.+.
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~lPd~sr 43 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSLPDISR 43 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS---GGG
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeCccHHh
Confidence 68999999999999999654 55666655555899987655443
No 76
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.28 Score=46.28 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=68.1
Q ss_pred ecCeEEEEEEEecCCcce--------EE-EeeeecEEEEeEEEEcCCCCC--CCCCeee----eceeeEEEEecEEecCC
Q 048431 158 SNNIRINGLLSLNSQMYH--------IV-INRCQDVLVEGAKIIAAGDSP--NTDGIHV----QQSRNVIIKSSSIKTGD 222 (396)
Q Consensus 158 ~~nv~i~~~~i~~~~~~~--------i~-~~~~~nv~i~n~~i~~~~~~~--~~DGi~~----~~s~nv~I~n~~i~~~d 222 (396)
.+++.++++++.+....+ +. -.+.+.+.++||++....+.. ..-|... ...-+-.++||+|+..-
T Consensus 188 ~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~Gdv 267 (405)
T COG4677 188 NNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDV 267 (405)
T ss_pred cCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccc
Confidence 345555555655543322 22 235677888888888643310 0001110 01124567888888644
Q ss_pred ceEEeCCCCccEEEEeeeEeC------Cce-EEEeeccccCCCCCEEEEEEEeeEEeCCcc--EEEEEeecCCCCceEEc
Q 048431 223 DCISIGPGTNNLWIERVTCGP------GHG-ISIGSLAKDLDEEGVQNVTVFKTVFTGTTN--GLRIKSWARPSNGFVRG 293 (396)
Q Consensus 223 D~i~i~~~~~ni~i~n~~~~~------~~g-i~igs~g~~~~~~~~~ni~i~n~~~~~~~~--gi~i~~~~~~~~g~v~n 293 (396)
|-| + |+--.++.+|.+.. ..| |.-.|. ..+.-....+-|++|..... -+.++-.........-.
T Consensus 268 DfI-f--GsgtaVFd~c~i~~~d~r~~~~gYIfApST----~~~~~YGflalNsrfna~g~~~s~~LGRpwd~~a~~nGQ 340 (405)
T COG4677 268 DFI-F--GSGTAVFDNCEIQVVDSRTQQEGYIFAPST----LSGIPYGFLALNSRFNASGDAGSAQLGRPWDVDANTNGQ 340 (405)
T ss_pred eEE-e--ccceEEeccceEEEeccCCCcceeEeccCC----CCCCceeEEEEeeeeecCCCCCeeeecCccccccccCce
Confidence 433 3 33457777887632 124 222222 23345567777888876543 22332111112234445
Q ss_pred EEEEeeEeec
Q 048431 294 IRFIDALMQN 303 (396)
Q Consensus 294 I~~~ni~~~~ 303 (396)
++|+|..|..
T Consensus 341 vVirds~m~e 350 (405)
T COG4677 341 VVIRDSVMGE 350 (405)
T ss_pred EEEEeccccc
Confidence 7777776643
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.62 E-value=0.41 Score=42.96 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=28.2
Q ss_pred cEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEec-CCceEEeCCCCccEEEEeeeEe
Q 048431 183 DVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKT-GDDCISIGPGTNNLWIERVTCG 242 (396)
Q Consensus 183 nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~~~ni~i~n~~~~ 242 (396)
..+|+|+.|-. +..||||..+ +.+|+|+.... +.|+++++.....++|.+.-..
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~ 116 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGAR 116 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEE
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCccc
Confidence 34455555532 3456666665 45666666654 5666766664334555544443
No 78
>PLN02773 pectinesterase
Probab=95.47 E-value=0.35 Score=46.36 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=78.6
Q ss_pred EeeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccC
Q 048431 178 INRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDL 256 (396)
Q Consensus 178 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (396)
...++++..+|++|.+.........+.+. ..+++.+.||.|....|.+.... ..-.+++|.+.+.-.+=+|+-
T Consensus 98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~g---- 171 (317)
T PLN02773 98 IVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGNS---- 171 (317)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeecc----
Confidence 34568999999999986432222333333 35889999999999999888765 368999999988777777653
Q ss_pred CCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCC
Q 048431 257 DEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 257 ~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|++|++.....|. |..........-....|.|+++.+..
T Consensus 172 ------~a~Fe~c~i~s~~~g~-ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 172 ------TALLEHCHIHCKSAGF-ITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ------EEEEEeeEEEEccCcE-EECCCCCCCCCCceEEEEccEEecCC
Confidence 6789999997654443 32211101112235789999998753
No 79
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=94.30 E-value=1.1 Score=43.67 Aligned_cols=119 Identities=8% Similarity=0.056 Sum_probs=74.0
Q ss_pred EEeecCeEEEEEEEecCC-cceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCCcc
Q 048431 155 ITKSNNIRINGLLSLNSQ-MYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNN 233 (396)
Q Consensus 155 ~~~~~nv~i~~~~i~~~~-~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~n 233 (396)
+.+-.+|++.|+.+...+ ..++.+....++++.+|.+.+- .. .-+.......|++|.|..-.-|+.-.+ ...
T Consensus 117 V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~g--~cl~~~~~~~VrGC~F~~C~~gi~~~~-~~~ 189 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----HG--TCLESWAGGEVRGCTFYGCWKGIVSRG-KSK 189 (386)
T ss_pred EeeeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----cc--eeEEEcCCcEEeeeEEEEEEEEeecCC-cce
Confidence 334467888888887766 6677777778888888888863 22 333444567888888876554553333 567
Q ss_pred EEEEeeeEeCCc-eEEEeeccccCCCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEE
Q 048431 234 LWIERVTCGPGH-GISIGSLAKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRF 296 (396)
Q Consensus 234 i~i~n~~~~~~~-gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~ 296 (396)
+.|++|.++... |+. +.| +..+++|.+.++.-.+.++ +.|.+++..|
T Consensus 190 lsVk~C~FekC~igi~--s~G---------~~~i~hn~~~ec~Cf~l~~-----g~g~i~~N~v 237 (386)
T PF01696_consen 190 LSVKKCVFEKCVIGIV--SEG---------PARIRHNCASECGCFVLMK-----GTGSIKHNMV 237 (386)
T ss_pred EEeeheeeeheEEEEE--ecC---------CeEEecceecccceEEEEc-----ccEEEeccEE
Confidence 788888877553 553 221 3455566666654444443 3455554444
No 80
>PLN02480 Probable pectinesterase
Probab=94.24 E-value=1.7 Score=42.09 Aligned_cols=111 Identities=8% Similarity=0.059 Sum_probs=75.7
Q ss_pred eeecEEEEeEEEEcCCCC-----CCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeecc
Q 048431 180 RCQDVLVEGAKIIAAGDS-----PNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLA 253 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g 253 (396)
..++++++|++|.+.... ....++.+. .++++.++||.|....|.+.... ..-.+++|++.+.-.+=+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 558999999999986321 123455553 47899999999999888887544 46899999998766666654
Q ss_pred ccCCCCCEEEEEEEeeEEeCCc------cEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 254 KDLDEEGVQNVTVFKTVFTGTT------NGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 254 ~~~~~~~~~ni~i~n~~~~~~~------~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
-...|+||++.... .|. |... ++....-....|.|+++.+.
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~-ITA~-~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGS-ITAH-NRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceE-EEcC-CCCCCCCCEEEEECCEEccc
Confidence 26788999987532 122 3222 21123334578999999864
No 81
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=94.19 E-value=1.8 Score=43.03 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=11.4
Q ss_pred EEEeEEEEeEEEeeCCCeeEEEeeCC
Q 048431 329 KISDVIYQDIRGTSATPIAIKFDCST 354 (396)
Q Consensus 329 ~i~nI~~~ni~~~~~~~~~~~i~~~~ 354 (396)
.|.|--|++.+++.-......+.+.|
T Consensus 274 ~I~nNY~~gl~g~~~~~~~~v~ng~p 299 (425)
T PF14592_consen 274 TIYNNYFEGLTGTRFRGALAVMNGVP 299 (425)
T ss_dssp EEES-EEEESSB-TTTTSEE-EEE--
T ss_pred EEEcceeeccccceeecceeeccCCC
Confidence 56677777776654433222244543
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.73 E-value=0.11 Score=34.04 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=17.1
Q ss_pred CeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeee
Q 048431 202 GIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVT 240 (396)
Q Consensus 202 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~ 240 (396)
||.++.+.+.+|+++.+....|||.+.. +++.+|++++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~ 38 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNT 38 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCE
Confidence 3444444444455555544444444444 3333444433
No 83
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=93.59 E-value=5.3 Score=35.95 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=85.3
Q ss_pred ecCeEEEEEEEecCCcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeecee-eEEEEecEEecCCceEEeCCCCccEEE
Q 048431 158 SNNIRINGLLSLNSQMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSR-NVIIKSSSIKTGDDCISIGPGTNNLWI 236 (396)
Q Consensus 158 ~~nv~i~~~~i~~~~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~~~~~ni~i 236 (396)
-+..+|+++.|-.....++|... +.+|+|++.+.. ..|.+.+.+.. .++|.+.-.++.+|=+.=..+.-.+.|
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I 133 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTI 133 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEE
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEE
Confidence 47899999999777778999887 889999999974 46889988766 889999998887776655555667888
Q ss_pred EeeeEeCCceEEEeeccccCCC-CCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEe
Q 048431 237 ERVTCGPGHGISIGSLAKDLDE-EGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFID 298 (396)
Q Consensus 237 ~n~~~~~~~gi~igs~g~~~~~-~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~n 298 (396)
+|.+.. ..|--+-|-|.-... +.-+++.+++........-..|....+ ....++++.++.
T Consensus 134 ~nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g-D~ati~~~~~~~ 194 (215)
T PF03211_consen 134 KNFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG-DTATISNSCIKG 194 (215)
T ss_dssp EEEEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT-TTEEEEEEEEEE
T ss_pred EeEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC-CeEEEEEEEecC
Confidence 885543 234222233322212 245667777665443332345555555 666777766665
No 84
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=92.62 E-value=2.2 Score=43.65 Aligned_cols=115 Identities=6% Similarity=0.063 Sum_probs=77.9
Q ss_pred EeeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccC
Q 048431 178 INRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDL 256 (396)
Q Consensus 178 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (396)
....+++..+|++|.+.........+.+. ..+...+.+|.|....|.+...+ ..-.+++|++.+.-.+=+|..
T Consensus 309 ~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 382 (529)
T PLN02170 309 AAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGNS---- 382 (529)
T ss_pred EEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceecccc----
Confidence 34568899999999986532233444443 35889999999999999888766 356889999988777766642
Q ss_pred CCCCEEEEEEEeeEEeCCcc---EEEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 257 DEEGVQNVTVFKTVFTGTTN---GLRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 257 ~~~~~~ni~i~n~~~~~~~~---gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... .-.|. ..++ ....-..+.|.|+++.+..
T Consensus 383 ------~avFq~C~I~~~~~~~~~g~IT-Aq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 383 ------AVVFQSCNIAARKPSGDRNYVT-AQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred ------eEEEeccEEEEecCCCCceEEE-ecCCCCCCCCceEEEEeeEEecCC
Confidence 67888888875321 12232 2221 2233356899999998753
No 85
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=92.62 E-value=1.1 Score=42.80 Aligned_cols=113 Identities=10% Similarity=0.085 Sum_probs=66.4
Q ss_pred eeecEEEEeEEEEcCCCCC--CCCCeeeeceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 180 RCQDVLVEGAKIIAAGDSP--NTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~~--~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
..+++.++|++|.+..... .+-.+.+ ..+++.+.+|.|....|.+.... ....++||.+.+.-.+=+|..
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~--~r~y~~~c~IeG~vDFIfG~~----- 156 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANG--GRQYFKNCYIEGNVDFIFGNG----- 156 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-S--SEEEEES-EEEESEEEEEESS-----
T ss_pred cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeecc--ceeEEEeeEEEecCcEEECCe-----
Confidence 4689999999999854221 2233444 34789999999999989887765 368999999988777777753
Q ss_pred CCCEEEEEEEeeEEeCCc----cEEEEEeecCCCCceEEcEEEEeeEeecCC
Q 048431 258 EEGVQNVTVFKTVFTGTT----NGLRIKSWARPSNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. ....|..........-...+|.|+++....
T Consensus 157 -----~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~ 203 (298)
T PF01095_consen 157 -----TAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDS 203 (298)
T ss_dssp -----EEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEEST
T ss_pred -----eEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCc
Confidence 5578899887532 112332211111223445789999998753
No 86
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.54 E-value=0.21 Score=32.68 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=29.7
Q ss_pred eEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEec
Q 048431 175 HIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKT 220 (396)
Q Consensus 175 ~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 220 (396)
++.+..+.+.+|++.++.. +.+||++..+++-+|+++.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 3566667777788888775 4568888887777887777764
No 87
>PLN02665 pectinesterase family protein
Probab=92.46 E-value=3.3 Score=40.50 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=76.1
Q ss_pred EeeeecEEEEeEEEEcCCCC-----CCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEee
Q 048431 178 INRCQDVLVEGAKIIAAGDS-----PNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGS 251 (396)
Q Consensus 178 ~~~~~nv~i~n~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs 251 (396)
...++++..+|++|.+.... .....+.+. ..+...+.||.|....|.+.... ..-.+++|++.+.-.+=+|.
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG~ 227 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFGS 227 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceeccc
Confidence 34678999999999986421 111233332 35889999999999989887655 36889999998776766655
Q ss_pred ccccCCCCCEEEEEEEeeEEeCCccE--EEEEeecCCCCceEEcEEEEeeEeecCC
Q 048431 252 LAKDLDEEGVQNVTVFKTVFTGTTNG--LRIKSWARPSNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 252 ~g~~~~~~~~~ni~i~n~~~~~~~~g--i~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
- ...|++|++.-...+ -.|..........-....|.|+++.+..
T Consensus 228 g----------~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 228 G----------KSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred c----------ceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 2 557888888754332 1222211111122345789999998754
No 88
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.21 E-value=2.8 Score=44.24 Aligned_cols=113 Identities=6% Similarity=0.021 Sum_probs=76.9
Q ss_pred eeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCC
Q 048431 180 RCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDE 258 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (396)
..+++..+|++|+|.........+.+. ..++..+.||.|....|.+.... ..-.+++|++.+.-.+=+|..
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 406 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGDA------ 406 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecCc------
Confidence 457899999999986543334445544 36889999999999888887665 357999999987767666542
Q ss_pred CCEEEEEEEeeEEeCCc----cEEEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 259 EGVQNVTVFKTVFTGTT----NGLRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 259 ~~~~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. ..-.|. ..++ ....-..+.|.|+++....
T Consensus 407 ----~avfq~C~I~~r~~~~~~~~~IT-Aqgr~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 407 ----AAVFQNCTLLVRKPLLNQACPIT-AHGRKDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred ----eEEEEccEEEEccCCCCCceeEe-cCCCCCCCCCceEEEEeeEEecCc
Confidence 5788888887431 112232 2221 1233456899999998753
No 89
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=91.89 E-value=3.8 Score=41.93 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=34.6
Q ss_pred eecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeCCCC
Q 048431 157 KSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIGPGT 231 (396)
Q Consensus 157 ~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~ 231 (396)
..+++..+|++|+|... ..+.+. ..+...+.+|.|.+..| -+.... .+-.+++|+|...=|-|. + .
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QD-----TLy~~~-~rqyy~~C~I~G~vDFIF-G--~ 338 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQD-----TLYAAA-LRQFYRECDIYGTIDFIF-G--N 338 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccc-----hheeCC-CcEEEEeeEEEeccceEe-c--c
Confidence 45666666666666532 122222 34555556666654222 122111 223555555554333332 1 2
Q ss_pred ccEEEEeeeE
Q 048431 232 NNLWIERVTC 241 (396)
Q Consensus 232 ~ni~i~n~~~ 241 (396)
....++||.+
T Consensus 339 a~avf~~C~i 348 (497)
T PLN02698 339 AAAVFQNCYL 348 (497)
T ss_pred cceeecccEE
Confidence 2455555555
No 90
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=91.50 E-value=5.9 Score=41.46 Aligned_cols=113 Identities=6% Similarity=0.028 Sum_probs=77.2
Q ss_pred eeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCC
Q 048431 180 RCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDE 258 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (396)
..+++..+|++|.+.........+.+. .+++..+.||.|....|.+.... ..-.+++|++.+.-.+=+|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------- 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc-------
Confidence 568899999999986432233444443 36889999999999988887665 35799999998776776665
Q ss_pred CCEEEEEEEeeEEeCCcc----EEEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 259 EGVQNVTVFKTVFTGTTN----GLRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 259 ~~~~ni~i~n~~~~~~~~----gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
-...|+||++.-... .-.|. ..++ ....-..+.|.|+++....
T Consensus 441 ---a~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 441 ---AAAIFQNCLIFVRKPLPNQQNTVT-AQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ---eeEEEEecEEEEecCCCCCCceEE-ecCCCCCCCCceEEEEeeEEecCc
Confidence 367888888864210 11232 2221 2233457899999998753
No 91
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=91.46 E-value=4.2 Score=41.75 Aligned_cols=113 Identities=4% Similarity=0.016 Sum_probs=76.6
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+.... ..-.+++|++.+.-.+=+|..
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 362 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGDA----- 362 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecCc-----
Confidence 3567899999999986543334444443 35889999999999999888766 346889999988777777653
Q ss_pred CCCEEEEEEEeeEEeCCc----cEEEEEeecCC-CCceEEcEEEEeeEeecC
Q 048431 258 EEGVQNVTVFKTVFTGTT----NGLRIKSWARP-SNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~v~nI~~~ni~~~~~ 304 (396)
...|+||++.-.. ..-.|.. .++ ....-..+.|.|+++...
T Consensus 363 -----~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 363 -----TAVFQNCQILAKKGLPNQKNTITA-QGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred -----eEEEEccEEEEecCCCCCCceEEe-cCCCCCCCCcEEEEEeeEEecC
Confidence 6788888886521 1112222 121 223345688999999764
No 92
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=91.07 E-value=3 Score=43.32 Aligned_cols=113 Identities=5% Similarity=0.014 Sum_probs=76.9
Q ss_pred eeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCC
Q 048431 180 RCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDE 258 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (396)
..+++..+|++|.+.........+.+. .+++..+.||.|....|.+...+ ..-.+++|.+.+.-.+=+|..
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a------ 414 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGNS------ 414 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeeccc------
Confidence 457899999999986543233444443 46889999999999888887766 346799999988777777653
Q ss_pred CCEEEEEEEeeEEeCCcc----EEEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 259 EGVQNVTVFKTVFTGTTN----GLRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 259 ~~~~ni~i~n~~~~~~~~----gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... .-.|.. .++ ....-..+.|.|+++....
T Consensus 415 ----~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 415 ----AVVFQNCNILPRRPMKGQQNTITA-QGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred ----eEEEeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEccEEecCC
Confidence 67888888864211 112322 221 2233456899999998753
No 93
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=91.02 E-value=3.4 Score=42.71 Aligned_cols=115 Identities=7% Similarity=0.047 Sum_probs=77.3
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+...++ .-.+++|.+.+.-.+=+|..
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 392 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTVDFIFGNA----- 392 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC--cEEEEeeEEEeccceecccc-----
Confidence 3557899999999986432233444443 368899999999999998887763 46999999987777766653
Q ss_pred CCCEEEEEEEeeEEeCCcc----EEEEEeecCCCCceEEcEEEEeeEeecCC
Q 048431 258 EEGVQNVTVFKTVFTGTTN----GLRIKSWARPSNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... .-.|..........-..+.|.|+++....
T Consensus 393 -----~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 393 -----AVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASS 439 (548)
T ss_pred -----eeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCc
Confidence 67888888865321 11222211112233457899999998753
No 94
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=90.85 E-value=4.6 Score=40.20 Aligned_cols=117 Identities=10% Similarity=0.071 Sum_probs=76.4
Q ss_pred EeeeecEEEEeEEEEcCCC----CCCCCCeeee-ceeeEEEEecEEecCCceEEeCCC----------CccEEEEeeeEe
Q 048431 178 INRCQDVLVEGAKIIAAGD----SPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPG----------TNNLWIERVTCG 242 (396)
Q Consensus 178 ~~~~~nv~i~n~~i~~~~~----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~----------~~ni~i~n~~~~ 242 (396)
....+++..+|++|.+... ......+.+. ..+.+.+.+|.|....|.+..... ...-.+++|.+.
T Consensus 202 ~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIe 281 (422)
T PRK10531 202 WSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIE 281 (422)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEe
Confidence 3467899999999998642 1122333333 358899999999998898877421 236899999998
Q ss_pred CCceEEEeeccccCCCCCEEEEEEEeeEEeCCcc----EEEEEeecCCCCceEEcEEEEeeEeecCC
Q 048431 243 PGHGISIGSLAKDLDEEGVQNVTVFKTVFTGTTN----GLRIKSWARPSNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 243 ~~~gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
+.-.+-+|.- ...|+||++..... .-.|... ......-...+|.|+++....
T Consensus 282 G~VDFIFG~g----------~AvFenC~I~s~~~~~~~~g~ITA~-~t~~~~~~GfvF~nCrit~~g 337 (422)
T PRK10531 282 GDVDFVFGRG----------AVVFDNTEFRVVNSRTQQEAYVFAP-ATLPNIYYGFLAINSRFNASG 337 (422)
T ss_pred ecccEEccCc----------eEEEEcCEEEEecCCCCCceEEEec-CCCCCCCCEEEEECCEEecCC
Confidence 7767766652 66788888865321 1122211 112223345889999998753
No 95
>PLN02176 putative pectinesterase
Probab=90.81 E-value=4.8 Score=39.03 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=74.4
Q ss_pred eeecEEEEeEEEEcCCCC------CCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeec
Q 048431 180 RCQDVLVEGAKIIAAGDS------PNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSL 252 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~------~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~ 252 (396)
..+++..+|++|.+.... .....+.+. ..++..+.+|.|....|.+.... ..-.+++|.+.+.-.+=+|..
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~a 197 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGYA 197 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecCc
Confidence 568999999999986421 112333332 35889999999999888887655 468999999987777666542
Q ss_pred cccCCCCCEEEEEEEeeEEeCCc--------cEEEEEeecCC-CCceEEcEEEEeeEeecC
Q 048431 253 AKDLDEEGVQNVTVFKTVFTGTT--------NGLRIKSWARP-SNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 253 g~~~~~~~~~ni~i~n~~~~~~~--------~gi~i~~~~~~-~~g~v~nI~~~ni~~~~~ 304 (396)
...|+||++.-.. .| .|.. .++ ....-....|.|+++.+.
T Consensus 198 ----------~a~Fe~C~I~s~~~~~~~~~~~g-~ITA-~~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 198 ----------QSIFEGCTLKLTLGIYPPNEPYG-TITA-QGRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred ----------eEEEeccEEEEecccCCCCCCcE-EEEe-CCCCCCCCCcEEEEECCEEccC
Confidence 6788999887421 12 2221 121 112234688999999874
No 96
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=90.77 E-value=10 Score=34.96 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=68.7
Q ss_pred ceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEec-CCceEEeCCCCccEEEEeeeEeCCceEEEeec
Q 048431 174 YHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKT-GDDCISIGPGTNNLWIERVTCGPGHGISIGSL 252 (396)
Q Consensus 174 ~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~ 252 (396)
..+.+....+.+|++++|.++.. ...-|+.+.++ +.+|+||+|.+ ..+ |+.+-..
T Consensus 89 qn~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~----------------------GI~v~g~ 144 (246)
T PF07602_consen 89 QNVTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGRE----------------------GIFVTGT 144 (246)
T ss_pred eeEEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccc----------------------cEEEEee
Confidence 33455566788889999998621 13345666554 55666655554 122 3333111
Q ss_pred cccCCCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecCCccEEEEeecCCCCCC-CCCCCcceEEE
Q 048431 253 AKDLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNVQHPIIIDQNYCPHNLN-CPGQISGVKIS 331 (396)
Q Consensus 253 g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~-~~~~~~~~~i~ 331 (396)
. ....+.+++|+++.+.....|+.+..... + +.| .++|..+++...++.+...- ...+. ....+..-.++
T Consensus 145 ~---~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~-~~n-~I~NN~I~~N~~Gi~~~~~~-pDlG~~s~~~~g~N~~~ 215 (246)
T PF07602_consen 145 S---ANPGINGNVISGNSIYFNKTGISISDNAA---P-VEN-KIENNIIENNNIGIVAIGDA-PDLGTGSEGSPGNNIFR 215 (246)
T ss_pred e---cCCcccceEeecceEEecCcCeEEEcccC---C-ccc-eeeccEEEeCCcCeEeeccC-CccccCCCCCCCCcEEe
Confidence 0 02346677777777777777777764422 2 111 22444444444465544322 11111 01112334566
Q ss_pred eEEEEeEEEee
Q 048431 332 DVIYQDIRGTS 342 (396)
Q Consensus 332 nI~~~ni~~~~ 342 (396)
+-..-|+....
T Consensus 216 ~N~~~Dl~~~~ 226 (246)
T PF07602_consen 216 NNGRYDLNNSA 226 (246)
T ss_pred cCcceeeEecc
Confidence 66666666533
No 97
>PLN02304 probable pectinesterase
Probab=90.54 E-value=6 Score=38.85 Aligned_cols=113 Identities=6% Similarity=0.094 Sum_probs=73.8
Q ss_pred eeecEEEEeEEEEcCCCC-----CCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeecc
Q 048431 180 RCQDVLVEGAKIIAAGDS-----PNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLA 253 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g 253 (396)
..+++..+|++|.+.... .....+.+. ..++..+.+|.|....|.+.... ..-.+++|.+.+.-.+=+|.-
T Consensus 160 ~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~--gR~Yf~~CyIeG~VDFIFG~g- 236 (379)
T PLN02304 160 FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR--GRHYFKDCYIQGSIDFIFGDA- 236 (379)
T ss_pred ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC--CCEEEEeeEEcccccEEeccc-
Confidence 457899999999986421 122333333 36889999999999989887655 368899999988777777653
Q ss_pred ccCCCCCEEEEEEEeeEEeCCccE---------EEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 254 KDLDEEGVQNVTVFKTVFTGTTNG---------LRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 254 ~~~~~~~~~ni~i~n~~~~~~~~g---------i~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
...|++|++...... -.|..........-...+|.|+++.+.
T Consensus 237 ---------~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~ 287 (379)
T PLN02304 237 ---------RSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGT 287 (379)
T ss_pred ---------eEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEccC
Confidence 568888888753211 122221111122334577999999763
No 98
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=90.44 E-value=3.7 Score=42.41 Aligned_cols=113 Identities=9% Similarity=0.048 Sum_probs=75.3
Q ss_pred eeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCC
Q 048431 180 RCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDE 258 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (396)
..+++..+|++|.+.........+.+. .++...+.+|.|....|.+.... ..-.+++|++.+.-.+=+|..
T Consensus 310 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 381 (539)
T PLN02995 310 EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGNA------ 381 (539)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEeccc------
Confidence 457889999999986532233444443 35889999999999888887665 346999999987767766642
Q ss_pred CCEEEEEEEeeEEeCCcc----EEEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 259 EGVQNVTVFKTVFTGTTN----GLRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 259 ~~~~ni~i~n~~~~~~~~----gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... .-.|. ..++ ....-..+.|.|+++....
T Consensus 382 ----~avf~~C~i~~~~~~~~~~~~iT-A~~r~~~~~~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 382 ----AAVFQNCIILPRRPLKGQANVIT-AQGRADPFQNTGISIHNSRILPAP 428 (539)
T ss_pred ----ceEEeccEEEEecCCCCCcceEe-cCCCCCCCCCceEEEEeeEEecCC
Confidence 56788888864321 11232 1221 1233457899999998753
No 99
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=90.29 E-value=14 Score=36.42 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=33.6
Q ss_pred CccEEEEeeeEeCC--ceEEEeeccc---------------cCCCCCEEEEEEEeeEEeCCccEEEEEeecCCCCceEEc
Q 048431 231 TNNLWIERVTCGPG--HGISIGSLAK---------------DLDEEGVQNVTVFKTVFTGTTNGLRIKSWARPSNGFVRG 293 (396)
Q Consensus 231 ~~ni~i~n~~~~~~--~gi~igs~g~---------------~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~v~n 293 (396)
+.|+++++...-.. +|+-+++-.. |+-..-..|=.|+|+..+++ .|+.+.. .| .+++++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~~-DG-~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIGM-DG-KGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEE-EC-CS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeeee-cC-CCceEee
Confidence 57888888865433 4677665321 11111234556777777765 3443332 23 7788888
Q ss_pred EEEEeeEeec
Q 048431 294 IRFIDALMQN 303 (396)
Q Consensus 294 I~~~ni~~~~ 303 (396)
|+.+++.-.+
T Consensus 340 i~~~d~~g~G 349 (549)
T PF09251_consen 340 ITVQDCAGAG 349 (549)
T ss_dssp EEEES-SSES
T ss_pred EEeecccCCc
Confidence 8887775443
No 100
>PLN02314 pectinesterase
Probab=90.28 E-value=4.6 Score=42.23 Aligned_cols=112 Identities=8% Similarity=0.056 Sum_probs=76.6
Q ss_pred eeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCC
Q 048431 180 RCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDE 258 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (396)
..+++..+|++|.+.........+.+. ..+...+.||.|....|.+...++ .-.+++|++.+.-.+=+|..
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~a------ 434 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGNA------ 434 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccCc------
Confidence 567899999999986432233444443 358899999999999898877663 46899999987777766642
Q ss_pred CCEEEEEEEeeEEeCCc-----cEEEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 259 EGVQNVTVFKTVFTGTT-----NGLRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 259 ~~~~ni~i~n~~~~~~~-----~gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||.+.-.. .+ .|. ..++ ....-..+.|.|+++....
T Consensus 435 ----~avf~~c~i~~~~~~~~~~~-~iT-A~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 435 ----AVVFQNCNIQPRQPLPNQFN-TIT-AQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ----eeeeeccEEEEecCCCCCCc-eEe-cCCCCCCCCCCEEEEEeeEEecCC
Confidence 6688888886421 11 222 2221 2234456899999998754
No 101
>PLN02634 probable pectinesterase
Probab=90.26 E-value=5.2 Score=38.98 Aligned_cols=111 Identities=5% Similarity=0.039 Sum_probs=73.3
Q ss_pred eeecEEEEeEEEEcCCCC-----CCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeecc
Q 048431 180 RCQDVLVEGAKIIAAGDS-----PNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLA 253 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g 253 (396)
..+++..+|++|.+.... .....+.+. ..++..+.+|.|....|.+.... ..-.+++|.+.+.-.+=+|.-
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~g- 223 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGNG- 223 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCCc-
Confidence 457888899999885421 122333332 35889999999999888887654 368999999987767766542
Q ss_pred ccCCCCCEEEEEEEeeEEeCCcc--EEEEEeecCC-CCceEEcEEEEeeEeecC
Q 048431 254 KDLDEEGVQNVTVFKTVFTGTTN--GLRIKSWARP-SNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 254 ~~~~~~~~~ni~i~n~~~~~~~~--gi~i~~~~~~-~~g~v~nI~~~ni~~~~~ 304 (396)
...|+||++..... | .|. ..++ ....-....|.|+++.+.
T Consensus 224 ---------~a~Fe~C~I~s~~~~~g-~IT-A~~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 224 ---------RSMYKDCELHSIASRFG-SIA-AHGRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred ---------eEEEeccEEEEecCCCc-EEE-eCCCCCCCCCcEEEEEcCEEcCC
Confidence 55788888875422 2 222 2221 112334678999999864
No 102
>PLN02671 pectinesterase
Probab=90.09 E-value=6 Score=38.60 Aligned_cols=112 Identities=10% Similarity=0.128 Sum_probs=72.5
Q ss_pred eeecEEEEeEEEEcCCC----CCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccc
Q 048431 180 RCQDVLVEGAKIIAAGD----SPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAK 254 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~ 254 (396)
..+++..+|++|++... ......+.+. ..+++.+.||.|....|.+.... ..-.+++|.+.+.-.+=+|.-
T Consensus 152 ~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~CyIeG~VDFIFG~g-- 227 (359)
T PLN02671 152 ESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDET--GSHYFYQCYIQGSVDFIFGNA-- 227 (359)
T ss_pred ECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCC--CcEEEEecEEEEeccEEecce--
Confidence 45788888888888531 1122333332 35889999999999888887654 357999999987767666542
Q ss_pred cCCCCCEEEEEEEeeEEeCCc--cEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 255 DLDEEGVQNVTVFKTVFTGTT--NGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 255 ~~~~~~~~ni~i~n~~~~~~~--~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
...|+||++.... .| .|..........-...+|.|+++.+.
T Consensus 228 --------~A~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 228 --------KSLYQDCVIQSTAKRSG-AIAAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred --------eEEEeccEEEEecCCCe-EEEeeccCCCCCCccEEEEccEEccC
Confidence 5688888886532 23 23221110112234678999999764
No 103
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=90.08 E-value=1.5 Score=40.85 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=38.5
Q ss_pred EEeCCCCccEEEEeeeEeCCceEEEee---ccccCCCCCEEEEEEEeeEEeCC-----ccEEEEEeecCCCCceEEcEEE
Q 048431 225 ISIGPGTNNLWIERVTCGPGHGISIGS---LAKDLDEEGVQNVTVFKTVFTGT-----TNGLRIKSWARPSNGFVRGIRF 296 (396)
Q Consensus 225 i~i~~~~~ni~i~n~~~~~~~gi~igs---~g~~~~~~~~~ni~i~n~~~~~~-----~~gi~i~~~~~~~~g~v~nI~~ 296 (396)
+++.. |.|..|+|..+.++.|+-||- .|.|. .-.+|....|+.+.++ -+|+.|.+ +...+-|-+
T Consensus 295 vaiyg-cdnfvidni~mvnsagmligygvikg~yl--sipqnfkln~i~ldn~~l~yklrgiqiss-----gnatsfvai 366 (464)
T PRK10123 295 VAIYG-CDNFVIDNIEMINSAGMLIGYGVIKGKYL--SIPQNFKLNNIQLDNTHLAYKLRGIQISA-----GNAVSFVAL 366 (464)
T ss_pred EEEEc-ccceEEeccccccccccEEEeeeeeccEe--cccccceeceEeecccccceeeeeeEecc-----CCcceEEEE
Confidence 44444 778888888887777765542 12221 1234555555555554 35666653 233344555
Q ss_pred EeeEeecC
Q 048431 297 IDALMQNV 304 (396)
Q Consensus 297 ~ni~~~~~ 304 (396)
.|+.|+.+
T Consensus 367 tn~~mkra 374 (464)
T PRK10123 367 TNIEMKRA 374 (464)
T ss_pred eeeehhhh
Confidence 56665543
No 104
>PLN02497 probable pectinesterase
Probab=89.97 E-value=3.8 Score=39.57 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=74.2
Q ss_pred eeeecEEEEeEEEEcCCCCC-------CCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEe
Q 048431 179 NRCQDVLVEGAKIIAAGDSP-------NTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIG 250 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~-------~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~ig 250 (396)
...+++..+|++|.+....+ ....+.+. ..++..+.||.|....|.+.... ..-.+++|++.+.-.+=+|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG 189 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIFG 189 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEcc
Confidence 45689999999999864311 11233332 35889999999999988886554 3689999999877677665
Q ss_pred eccccCCCCCEEEEEEEeeEEeCCcc------EEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 251 SLAKDLDEEGVQNVTVFKTVFTGTTN------GLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 251 s~g~~~~~~~~~ni~i~n~~~~~~~~------gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
.. ...|+||++..... .-.|..........-....|.|+++.+.
T Consensus 190 ~g----------~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 190 SG----------QSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred Cc----------eEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 42 56888888874211 1123221111122334678999999864
No 105
>PLN02197 pectinesterase
Probab=89.36 E-value=5.7 Score=41.44 Aligned_cols=114 Identities=6% Similarity=0.107 Sum_probs=77.2
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+...++ .-.+++|++.+.-.+=+|..
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 433 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIFGKS----- 433 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccccce-----
Confidence 3568899999999986532233445544 368899999999999998887663 56999999987766666542
Q ss_pred CCCEEEEEEEeeEEeCCc--cE--EEEEeecCCC--CceEEcEEEEeeEeecCC
Q 048431 258 EEGVQNVTVFKTVFTGTT--NG--LRIKSWARPS--NGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~--~g--i~i~~~~~~~--~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. .+ -.| +..++. ...-..+.|.|+++....
T Consensus 434 -----~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 434 -----ATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred -----eeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccEEecCC
Confidence 4788888876321 11 122 222311 233456899999998753
No 106
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=86.74 E-value=21 Score=36.54 Aligned_cols=114 Identities=9% Similarity=0.017 Sum_probs=76.7
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|++.........+.+. ..++..+.+|.|....|.+....+ .-.+++|++.+.-.+=+|..
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~a----- 339 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGNA----- 339 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEeccc-----
Confidence 3558999999999986532233444443 368899999999999998887663 46999999987767777652
Q ss_pred CCCEEEEEEEeeEEeCCcc--E--EEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 258 EEGVQNVTVFKTVFTGTTN--G--LRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~~--g--i~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++..... + -.|. ..++ ....-..+.|.|+++....
T Consensus 340 -----~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 340 -----AAVFQNCYLFLRRPHGKSYNVIL-ANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred -----ceeecccEEEEecCCCCCceEEE-ecCCCCCCCCceEEEEeeEEecCC
Confidence 56788888864211 1 1222 2121 2223456889999998754
No 107
>PLN02916 pectinesterase family protein
Probab=85.41 E-value=34 Score=35.01 Aligned_cols=114 Identities=9% Similarity=0.016 Sum_probs=78.7
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+...++ .-.+++|++.+.-.+=+|..
T Consensus 274 v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 346 (502)
T PLN02916 274 VSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGDA----- 346 (502)
T ss_pred EECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccCc-----
Confidence 3557899999999986543334445443 368899999999999999887763 57899999998777777653
Q ss_pred CCCEEEEEEEeeEEeCCc----cEEEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 258 EEGVQNVTVFKTVFTGTT----NGLRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. ..-.|.. .++ ....-..+.|.|+++....
T Consensus 347 -----~avFq~C~I~~~~~~~~~~g~ITA-q~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 347 -----AVVFQNCDIFVRRPMDHQGNMITA-QGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred -----eEEEecCEEEEecCCCCCcceEEe-cCCCCCCCCcEEEEEeeEEecCc
Confidence 6788888886432 1123322 121 2233457899999998753
No 108
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=84.45 E-value=16 Score=36.07 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=43.7
Q ss_pred eeEEEEecE-EecCCceEEeCCC-----------------------CccEEEEeeeEeCCceEEEeeccccCCCCCEEEE
Q 048431 209 RNVIIKSSS-IKTGDDCISIGPG-----------------------TNNLWIERVTCGPGHGISIGSLAKDLDEEGVQNV 264 (396)
Q Consensus 209 ~nv~I~n~~-i~~~dD~i~i~~~-----------------------~~ni~i~n~~~~~~~gi~igs~g~~~~~~~~~ni 264 (396)
=|..++|.. |..-.|++.+.+. -.|-.|+|.....+.|+.+|.-|+ .+.++||
T Consensus 264 YnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG~---~~yvsni 340 (549)
T PF09251_consen 264 YNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDGK---GGYVSNI 340 (549)
T ss_dssp BS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEECC---S-EEEEE
T ss_pred eeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecCC---CceEeeE
Confidence 345555554 3446778887662 267788999888888888876542 3457777
Q ss_pred EEEeeEEeCCccEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 265 TVFKTVFTGTTNGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 265 ~i~n~~~~~~~~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
++++|. ..|+.+... +-+|.||++.+.
T Consensus 341 ~~~d~~----g~G~~~~~~---------~~~ftNitvId~ 367 (549)
T PF09251_consen 341 TVQDCA----GAGIFIRGT---------NKVFTNITVIDT 367 (549)
T ss_dssp EEES-S----SESEEEECC---------S-EEEEEEEES-
T ss_pred Eeeccc----CCceEEeec---------CCceeeeEEEec
Confidence 776664 235555532 245666666554
No 109
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=84.22 E-value=27 Score=36.17 Aligned_cols=114 Identities=8% Similarity=0.043 Sum_probs=78.2
Q ss_pred EeeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccC
Q 048431 178 INRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDL 256 (396)
Q Consensus 178 ~~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~ 256 (396)
....+++..+|++|++.........+.+. ..+++.+.+|.|....|.+...+ ..-.+++|++.+.-.+=+|..
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~a---- 388 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGNG---- 388 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccCc----
Confidence 34668999999999986543333444443 36889999999999999888766 356999999988777777653
Q ss_pred CCCCEEEEEEEeeEEeCCcc----EEEEEeecCC-CCceEEcEEEEeeEeecC
Q 048431 257 DEEGVQNVTVFKTVFTGTTN----GLRIKSWARP-SNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 257 ~~~~~~ni~i~n~~~~~~~~----gi~i~~~~~~-~~g~v~nI~~~ni~~~~~ 304 (396)
...|+||++.-... .-.|.. .++ ....-..+.|.|+++...
T Consensus 389 ------~avfq~C~i~~r~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 389 ------AAVLQNCKIYTRVPLPLQKVTITA-QGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred ------eeEEeccEEEEccCCCCCCceEEc-cCCCCCCCCcEEEEEcCEEccC
Confidence 57888888875311 112322 121 122335688999999864
No 110
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=83.83 E-value=29 Score=36.21 Aligned_cols=115 Identities=8% Similarity=0.016 Sum_probs=78.3
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+...++ .-.+++|++.+.-.+=+|..
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 409 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYGTVDFIFGNA----- 409 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC--CEEEEeeEEecccceecccc-----
Confidence 3558999999999996543334445443 368899999999999999887763 57999999987777766653
Q ss_pred CCCEEEEEEEeeEEeCCc----cEEEEEeecCCCCceEEcEEEEeeEeecCC
Q 048431 258 EEGVQNVTVFKTVFTGTT----NGLRIKSWARPSNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. ..-.|..........-..+.|.|+++....
T Consensus 410 -----~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 456 (566)
T PLN02713 410 -----AVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAAD 456 (566)
T ss_pred -----eEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCC
Confidence 6788888886431 111222211112233456899999998643
No 111
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=83.37 E-value=31 Score=30.26 Aligned_cols=92 Identities=15% Similarity=0.067 Sum_probs=50.0
Q ss_pred eeeEEEEecEEec-C-------CceEEeCCCCccEEEEeeeEeCCce--EEE-eeccccCCCCCEEEEEEEeeEEeCCc-
Q 048431 208 SRNVIIKSSSIKT-G-------DDCISIGPGTNNLWIERVTCGPGHG--ISI-GSLAKDLDEEGVQNVTVFKTVFTGTT- 275 (396)
Q Consensus 208 s~nv~I~n~~i~~-~-------dD~i~i~~~~~ni~i~n~~~~~~~g--i~i-gs~g~~~~~~~~~ni~i~n~~~~~~~- 275 (396)
.++|+|++..|.. | -.+| +.+|..|.+|+|+.|.+.++ ++- ...+.....+.-.-.+++|+.|.++.
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGI-v~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGI-VTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeE-EeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 3577777777754 1 1233 33447888999999887653 332 11111112233344788888888754
Q ss_pred -------cEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 276 -------NGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 276 -------~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
.|..|... ...-..+.++|..+.+.
T Consensus 112 r~~~~~GtGYgv~N~----L~~tHsFvLenNclYnN 143 (198)
T PF08480_consen 112 RKSSPAGTGYGVINY----LPETHSFVLENNCLYNN 143 (198)
T ss_pred cccCCCCceeEEEec----CCCcceEEEEccceecc
Confidence 35555432 12234455666666554
No 112
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=82.65 E-value=10 Score=33.08 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=31.8
Q ss_pred eEEEEecEEecC-CceE--------EeCCCCccEEEEeeeEeCCc---eEEE-eeccccCCCCCEEEEEEEeeEEeCCcc
Q 048431 210 NVIIKSSSIKTG-DDCI--------SIGPGTNNLWIERVTCGPGH---GISI-GSLAKDLDEEGVQNVTVFKTVFTGTTN 276 (396)
Q Consensus 210 nv~I~n~~i~~~-dD~i--------~i~~~~~ni~i~n~~~~~~~---gi~i-gs~g~~~~~~~~~ni~i~n~~~~~~~~ 276 (396)
+|.|.|..|.+- .-+| .-+...+||+|.++.|.... .+.. |.. ...++.|.+|||+.|.+..+
T Consensus 3 dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGI----v~sGF~ntlIENNVfDG~y~ 78 (198)
T PF08480_consen 3 DIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGI----VTSGFYNTLIENNVFDGVYH 78 (198)
T ss_pred ceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeE----EeccccccEEEeeeeccccc
Confidence 566666666541 1122 11222467777777775421 1111 110 12356677777777777654
No 113
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=82.27 E-value=43 Score=34.60 Aligned_cols=113 Identities=6% Similarity=0.101 Sum_probs=77.1
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|.+.........+.+. .+++..+.+|.|....|.+...++ .-.+++|++.+.-.+=+|..
T Consensus 302 v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~a----- 374 (530)
T PLN02933 302 VKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGNA----- 374 (530)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccCc-----
Confidence 4568899999999986543233445544 368899999999999998877663 46999999998777777653
Q ss_pred CCCEEEEEEEeeEEeCCc----cEEEEEeecCC-CCceEEcEEEEeeEeecC
Q 048431 258 EEGVQNVTVFKTVFTGTT----NGLRIKSWARP-SNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~v~nI~~~ni~~~~~ 304 (396)
...|+||++.-.. ..-.|.. .++ ....-..+.|.|+++...
T Consensus 375 -----~avFq~C~i~~~~~~~~~~~~iTA-q~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 375 -----AVVFQNCSLYARKPNPNHKIAFTA-QSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred -----eEEEeccEEEEeccCCCCceEEEe-cCCCCCCCCceEEEEeeEEecC
Confidence 5678888886421 1112222 121 122335689999999874
No 114
>PLN02682 pectinesterase family protein
Probab=81.99 E-value=39 Score=33.16 Aligned_cols=113 Identities=6% Similarity=0.017 Sum_probs=75.3
Q ss_pred eeeecEEEEeEEEEcCCCC-----CCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeec
Q 048431 179 NRCQDVLVEGAKIIAAGDS-----PNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSL 252 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~ 252 (396)
...+++..+|++|.+.... .....+.+. ..++..+.||.|....|.+.... ..-.+++|++.+.-.+=+|.-
T Consensus 160 v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~g 237 (369)
T PLN02682 160 VNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGNG 237 (369)
T ss_pred EECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecCc
Confidence 3567899999999985421 112233332 36899999999999989887655 368999999988777767642
Q ss_pred cccCCCCCEEEEEEEeeEEeCCc--cEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 253 AKDLDEEGVQNVTVFKTVFTGTT--NGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 253 g~~~~~~~~~ni~i~n~~~~~~~--~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
...|++|++.... .| .|..........-....|.|+++.+.
T Consensus 238 ----------~a~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 238 ----------LSLYEGCHLHAIARNFG-ALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred ----------eEEEEccEEEEecCCCe-EEecCCCCCCCCCceEEEEeeEecCC
Confidence 6788888887432 23 23221110112235688999999874
No 115
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=81.98 E-value=34 Score=35.54 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=77.6
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|++.........+.+. .++++.+.+|.|....|.+...+ ..-.+++|.+.+.-.+=+|..
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 386 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGNA----- 386 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeeccc-----
Confidence 3568999999999986543333444443 35889999999999988887665 356999999988777767653
Q ss_pred CCCEEEEEEEeeEEeCCcc--E--EEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 258 EEGVQNVTVFKTVFTGTTN--G--LRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~~--g--i~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... + -.|. ..++ ....-..+.|.|+++....
T Consensus 387 -----~avfq~c~i~~~~~~~~~~~~iT-A~~r~~~~~~~G~vf~~c~i~~~~ 433 (541)
T PLN02416 387 -----AVVFQACNIVSKMPMPGQFTVIT-AQSRDTPDEDTGISIQNCSILATE 433 (541)
T ss_pred -----eEEEeccEEEEecCCCCCceEEE-CCCCCCCCCCCEEEEEeeEEecCC
Confidence 67888888865321 1 1222 2221 1223456899999997643
No 116
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=81.06 E-value=53 Score=34.08 Aligned_cols=115 Identities=6% Similarity=0.043 Sum_probs=78.5
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+...++ .-.+++|++.+.-.+=+|..
T Consensus 310 v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~GtVDFIFG~a----- 382 (538)
T PLN03043 310 VSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYGTVDFIFGNA----- 382 (538)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEeeccceEeecc-----
Confidence 3558999999999986543334455544 357899999999999998887763 57999999988777777653
Q ss_pred CCCEEEEEEEeeEEeCCc----cEEEEEeecCCCCceEEcEEEEeeEeecCC
Q 048431 258 EEGVQNVTVFKTVFTGTT----NGLRIKSWARPSNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. ..-.|..........-..+.|.|+++....
T Consensus 383 -----~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~ 429 (538)
T PLN03043 383 -----AAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAP 429 (538)
T ss_pred -----eeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCC
Confidence 6788888886521 111222211112223356899999998753
No 117
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=80.49 E-value=63 Score=33.15 Aligned_cols=113 Identities=6% Similarity=-0.023 Sum_probs=78.8
Q ss_pred eeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCC
Q 048431 180 RCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDE 258 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (396)
..+++..+|++|.+.........+.+. .++...+.+|.|....|.+...+ ..-.+++|.+.+.-.+=+|..
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~a------ 353 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGNA------ 353 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecce------
Confidence 457899999999986532234455554 36889999999999999887765 367999999988777777653
Q ss_pred CCEEEEEEEeeEEeCCcc----EEEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 259 EGVQNVTVFKTVFTGTTN----GLRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 259 ~~~~ni~i~n~~~~~~~~----gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-... .-.|. ..++ ....-..+.|.|+++....
T Consensus 354 ----~avFq~C~I~sr~~~~~~~~~IT-Aq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 354 ----AAVFQFCQIVARQPMMGQSNVIT-AQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ----EEEEEccEEEEecCCCCCCEEEE-eCCCCCCCCCcEEEEEeeEEecCC
Confidence 77899999875321 11333 2221 1233456999999998754
No 118
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=80.35 E-value=49 Score=34.74 Aligned_cols=114 Identities=7% Similarity=0.059 Sum_probs=78.0
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|.+.........+.+. ..++..+.||.|....|.+...+ ..-.+++|++.+.-.+=+|..
T Consensus 357 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a----- 429 (587)
T PLN02484 357 ATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGNA----- 429 (587)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceecccc-----
Confidence 3568899999999986543233445443 36889999999999999887766 357999999987767766553
Q ss_pred CCCEEEEEEEeeEEeCCc----cEEEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 258 EEGVQNVTVFKTVFTGTT----NGLRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~----~gi~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. ..-.|. ..++ ....-..++|.|+++....
T Consensus 430 -----~avfq~C~i~~~~~~~~~~~~IT-Aq~r~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 430 -----AVVLQNCSIYARKPMAQQKNTIT-AQNRKDPNQNTGISIHACRILAAS 476 (587)
T ss_pred -----eeEEeccEEEEecCCCCCceEEE-ecCCCCCCCCcEEEEEeeEEecCC
Confidence 6788888886421 111232 2221 2233457899999998643
No 119
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=79.99 E-value=48 Score=34.52 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=47.2
Q ss_pred EEEeecCeEEEEEEEecCCc----ceEEEe-eeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEecEEecCCceEEeC
Q 048431 154 SITKSNNIRINGLLSLNSQM----YHIVIN-RCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKSSSIKTGDDCISIG 228 (396)
Q Consensus 154 ~~~~~~nv~i~~~~i~~~~~----~~i~~~-~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~ 228 (396)
.....+++..+|++|.|... ..+.+. ..+.+.+.+|.|.+..| -+.... .+-.+++|.|...=|-|.-
T Consensus 325 ~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~~-~rq~y~~C~I~GtVDFIFG- 397 (553)
T PLN02708 325 VGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD-----TLYAHS-LRQFYKSCRIQGNVDFIFG- 397 (553)
T ss_pred EEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceeCC-CceEEEeeEEeecCCEEec-
Confidence 33456788888888887642 233333 45777777777776432 222222 3456777777765554422
Q ss_pred CCCccEEEEeeeEe
Q 048431 229 PGTNNLWIERVTCG 242 (396)
Q Consensus 229 ~~~~ni~i~n~~~~ 242 (396)
.-..+++||.+.
T Consensus 398 --~a~avfq~c~i~ 409 (553)
T PLN02708 398 --NSAAVFQDCAIL 409 (553)
T ss_pred --CceEEEEccEEE
Confidence 236777777764
No 120
>PLN02432 putative pectinesterase
Probab=79.96 E-value=44 Score=31.74 Aligned_cols=112 Identities=12% Similarity=0.088 Sum_probs=75.4
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|.+... .....+.+. ..++..+.+|.|....|.+.... ..-.++||.+.+.-.+-+|.-
T Consensus 91 v~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~g----- 162 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGNA----- 162 (293)
T ss_pred EECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecCc-----
Confidence 355789999999998642 223344443 35889999999999989887655 367999999987777777652
Q ss_pred CCCEEEEEEEeeEEeCCc--cEEEEEeecCCCCceEEcEEEEeeEeecC
Q 048431 258 EEGVQNVTVFKTVFTGTT--NGLRIKSWARPSNGFVRGIRFIDALMQNV 304 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~--~gi~i~~~~~~~~g~v~nI~~~ni~~~~~ 304 (396)
...|++|++.... .| .|..........-...+|.|+++.+.
T Consensus 163 -----~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg~ 205 (293)
T PLN02432 163 -----ASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTGA 205 (293)
T ss_pred -----eEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEccc
Confidence 5688888886421 23 33222111122234589999999864
No 121
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=78.09 E-value=64 Score=33.91 Aligned_cols=114 Identities=6% Similarity=0.047 Sum_probs=78.0
Q ss_pred eeeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCC
Q 048431 179 NRCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLD 257 (396)
Q Consensus 179 ~~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~ 257 (396)
...+++..+|++|.+.........+.+. .++...+.+|.|....|.+...++ .-.+++|.+.+.-.+=+|.
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~------ 430 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGN------ 430 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccc------
Confidence 3557899999999986543233444443 368899999999999998887763 4599999998776766654
Q ss_pred CCCEEEEEEEeeEEeCCcc--E--EEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 258 EEGVQNVTVFKTVFTGTTN--G--LRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 258 ~~~~~ni~i~n~~~~~~~~--g--i~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
-...|+||++.-... + -.|. ..++ ....-..+.|.|+++....
T Consensus 431 ----a~avfq~c~i~~r~~~~~~~~~iT-Aqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 431 ----AAAVLQDCDINARRPNSGQKNMVT-AQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ----eeEEEEccEEEEecCCCCCcceEE-ecCCCCCCCCceEEEEecEEecCC
Confidence 367889999874311 1 1222 2221 2233457999999997654
No 122
>PRK09810 entericidin A; Provisional
Probab=74.88 E-value=2.4 Score=27.42 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=12.9
Q ss_pred CcchhhHHHHHHHHHHhhcccccc
Q 048431 1 MDKFFSTLLYAFLLVLGTNNLLHS 24 (396)
Q Consensus 1 ~~~~~~~~~~~~l~~l~~~~~~~~ 24 (396)
|+|.+..++++++++|..|++...
T Consensus 1 mMkk~~~l~~~~~~~L~aCNTv~G 24 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGCNTARG 24 (41)
T ss_pred ChHHHHHHHHHHHHHHhhhhhccc
Confidence 556555444444555666665544
No 123
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=70.52 E-value=90 Score=31.21 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=21.8
Q ss_pred CCCcEEEecCceEEEeceeecccCCCCcEEEEEe
Q 048431 61 NESATIYVPKGRYLLGSVAFRSECKSPSITFLIN 94 (396)
Q Consensus 61 ~~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~ 94 (396)
...+-+++-+|+|....+.+.+ ++++.++
T Consensus 46 ~~e~LIFlH~G~~e~~~i~I~s-----dvqiiGA 74 (625)
T KOG1777|consen 46 DEEKLIFLHEGTHETETIRITS-----DVQIIGA 74 (625)
T ss_pred cccceEEEEeccccceEEEEcC-----CeeEecc
Confidence 4467889999999877777775 6776554
No 124
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=69.77 E-value=88 Score=32.77 Aligned_cols=113 Identities=7% Similarity=0.081 Sum_probs=77.8
Q ss_pred eeecEEEEeEEEEcCCCCCCCCCeeee-ceeeEEEEecEEecCCceEEeCCCCccEEEEeeeEeCCceEEEeeccccCCC
Q 048431 180 RCQDVLVEGAKIIAAGDSPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPGTNNLWIERVTCGPGHGISIGSLAKDLDE 258 (396)
Q Consensus 180 ~~~nv~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~g~~~~~ 258 (396)
..+++..+|++|.+.........+.+. .++...+.+|.|....|.+...+ ..-.+++|.+.+.-.+=+|..
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a------ 416 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGDA------ 416 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccCc------
Confidence 568999999999986532334445444 36889999999999989887765 357889999988777777653
Q ss_pred CCEEEEEEEeeEEeCCc--cE--EEEEeecCC-CCceEEcEEEEeeEeecCC
Q 048431 259 EGVQNVTVFKTVFTGTT--NG--LRIKSWARP-SNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 259 ~~~~ni~i~n~~~~~~~--~g--i~i~~~~~~-~~g~v~nI~~~ni~~~~~~ 305 (396)
...|+||++.-.. .+ -.|. ..++ ....-..+.|.|+++....
T Consensus 417 ----~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 417 ----KVVLQNCNIVVRKPMKGQSCMIT-AQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ----eEEEEccEEEEecCCCCCceEEE-eCCCCCCCCCceEEEEeeEEecCc
Confidence 5788888886421 11 2232 2221 1223456899999998754
No 125
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=68.29 E-value=8.6 Score=35.72 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcccccccccccEEEeeccCccCCCCcccHHHHHHHHHHHhhcCCCcEEEecCce----EEEe
Q 048431 8 LLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAACASNESATIYVPKGR----YLLG 76 (396)
Q Consensus 8 ~~~~~l~~l~~~~~~~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~----Y~~~ 76 (396)
+++..++.+...++.+.++.+.+.++++-| -|.+||.+- .+...|++|+|- |.+.
T Consensus 8 ~l~~A~~A~~~~~~~a~A~~~Vv~SIKPl~-----------~iasaI~dG---Vg~p~vlvp~gASpHdYsLr 66 (318)
T COG4531 8 LLLSALFALLLGSAPAAAAAAVVTSIKPLG-----------FIASAIADG---VGEPEVLLPGGASPHDYSLR 66 (318)
T ss_pred HHHHHHHHHHhccchhcccccceeeeccHH-----------HHHHHHHcc---CCCCceecCCCCCcccccCC
Confidence 333333333344445556666777777755 355566443 456679999984 7543
No 126
>PRK02710 plastocyanin; Provisional
Probab=59.24 E-value=11 Score=30.55 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=16.7
Q ss_pred CcchhhHHHHHHHHHHhhcccccccccccEEEe
Q 048431 1 MDKFFSTLLYAFLLVLGTNNLLHSSATSTIYNV 33 (396)
Q Consensus 1 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~v 33 (396)
|+|.+..++.++|++++.+.+.+..+.+..+.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V 33 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEV 33 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEE
Confidence 666666565555554444433344444444444
No 127
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=55.57 E-value=56 Score=31.36 Aligned_cols=113 Identities=11% Similarity=0.135 Sum_probs=65.8
Q ss_pred eecEEEEeEEEEcCCC----CCCCCCeeee-ceeeEEEEecEEecCCceEEeCCC----------CccEEEEeeeEeCCc
Q 048431 181 CQDVLVEGAKIIAAGD----SPNTDGIHVQ-QSRNVIIKSSSIKTGDDCISIGPG----------TNNLWIERVTCGPGH 245 (396)
Q Consensus 181 ~~nv~i~n~~i~~~~~----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~----------~~ni~i~n~~~~~~~ 245 (396)
-.+...+|+++.+... ..+.-.+.+. ..+.+.++||.+....|.+..+.. .-.-+++||++.+.-
T Consensus 188 ~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~Gdv 267 (405)
T COG4677 188 NNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDV 267 (405)
T ss_pred cCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccc
Confidence 3466667777776321 1233333332 357899999999988888877663 124568888887666
Q ss_pred eEEEeeccccCCCCCEEEEEEEeeEEeCCc-----cEEEEEeecCCCCceEEcEEEEeeEeecCC
Q 048431 246 GISIGSLAKDLDEEGVQNVTVFKTVFTGTT-----NGLRIKSWARPSNGFVRGIRFIDALMQNVQ 305 (396)
Q Consensus 246 gi~igs~g~~~~~~~~~ni~i~n~~~~~~~-----~gi~i~~~~~~~~g~v~nI~~~ni~~~~~~ 305 (396)
.+-+|+- -..|.+|.|.-.. .|. |.. +....+.--...+=|.++....
T Consensus 268 DfIfGsg----------taVFd~c~i~~~d~r~~~~gY-IfA-pST~~~~~YGflalNsrfna~g 320 (405)
T COG4677 268 DFIFGSG----------TAVFDNCEIQVVDSRTQQEGY-IFA-PSTLSGIPYGFLALNSRFNASG 320 (405)
T ss_pred eEEeccc----------eEEeccceEEEeccCCCccee-Eec-cCCCCCCceeEEEEeeeeecCC
Confidence 6777663 4567777776432 122 211 1113344445566666665443
No 128
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=51.96 E-value=15 Score=19.88 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=11.2
Q ss_pred EEEEEeeEEeCCcc-EEEEE
Q 048431 263 NVTVFKTVFTGTTN-GLRIK 281 (396)
Q Consensus 263 ni~i~n~~~~~~~~-gi~i~ 281 (396)
+++|+++++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 45666666666544 55554
No 129
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=40.45 E-value=96 Score=25.25 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=31.3
Q ss_pred CCcEEEecCceEEEeceeecccCCCCcEEEEEeeEEEeeCCccccCCCcceEEEeceeeEEEEc-eEEe
Q 048431 62 ESATIYVPKGRYLLGSVAFRSECKSPSITFLINGTLVAPTDYRVLGQANNWLSFEGVSHVSIIG-GALD 129 (396)
Q Consensus 62 ~g~~v~iP~G~Y~~~~l~l~~~~~~~n~~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-g~id 129 (396)
.+..|+||+|...+-....+. =-.|.++|+|.+..+. + +.+ .++.|.|.| |.+.
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~~-----l~~l~I~G~L~f~~~~-~-------~~L-~a~~I~V~~Gg~l~ 65 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTPK-----LGSLIIGGTLIFDDDR-D-------ITL-RAEYILVEGGGRLI 65 (125)
T ss_pred CCCEEEECCCCEEEEcCCChh-----eeEEEEEEEEEEccCC-C-------CEE-EEEEEEECCCCeEE
Confidence 478999999976432111111 1245558999887652 1 122 257788888 4443
No 130
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=38.42 E-value=2.1e+02 Score=22.92 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=40.7
Q ss_pred EeecCeEEEEEEEecC---CcceEEEeeeecEEEEeEEEEcCCCCCCCCCeeeeceeeEEEEe-cEEecCCceEE
Q 048431 156 TKSNNIRINGLLSLNS---QMYHIVINRCQDVLVEGAKIIAAGDSPNTDGIHVQQSRNVIIKS-SSIKTGDDCIS 226 (396)
Q Consensus 156 ~~~~nv~i~~~~i~~~---~~~~i~~~~~~nv~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n-~~i~~~dD~i~ 226 (396)
....+..+.+-.+.+. ..+++.+..+.+..+.+..+. .. .. .+|++++......+.+ ..+....|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 4556666666666655 367787776655555555554 11 12 6788887777777766 44444455553
No 131
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=35.65 E-value=23 Score=21.00 Aligned_cols=22 Identities=27% Similarity=0.236 Sum_probs=12.3
Q ss_pred CcchhhHHHHHHHHHHhhcccc
Q 048431 1 MDKFFSTLLYAFLLVLGTNNLL 22 (396)
Q Consensus 1 ~~~~~~~~~~~~l~~l~~~~~~ 22 (396)
|+|-+-.++++++++|..+...
T Consensus 1 Mrk~Lg~~~lAi~c~LL~s~Ls 22 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLFSHLS 22 (30)
T ss_dssp --SS-SSHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHhh
Confidence 6777777777776666655433
No 132
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=34.60 E-value=62 Score=31.69 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=29.2
Q ss_pred HHHHHHhhcccccccccccEEEeeccCccCCCCcccHHHHHHHHH
Q 048431 11 AFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWA 55 (396)
Q Consensus 11 ~~l~~l~~~~~~~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~ 55 (396)
++|..|.+.+.++++...+..-+..=|+.+......-+||++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~pliiAHRGas~~~PENTl~Af~~A~~ 52 (355)
T PRK11143 8 LLLAALLAGSAAAAADSAEKIVIAHRGASGYLPEHTLPAKAMAYA 52 (355)
T ss_pred HHHHHHHHHhhHhhhcCCCcEEEECCCCCCCCCcchHHHHHHHHH
Confidence 334444444444455556666677778888766666699999995
No 133
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.97 E-value=97 Score=25.69 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHHHhhcC-CCcEEEecCceEEEec
Q 048431 44 TDSTQAFAKAWAAACASN-ESATIYVPKGRYLLGS 77 (396)
Q Consensus 44 ~d~t~aiq~Ai~~a~~~~-~g~~v~iP~G~Y~~~~ 77 (396)
.+++..||+|=-....++ .-...-+|||+|-+..
T Consensus 59 ~~~~~~f~ractsit~dpv~~~f~~Lk~G~YAvaa 93 (151)
T COG4704 59 MSDPSRFQRACTSITGDPVSKSFYGLKPGKYAVAA 93 (151)
T ss_pred CCCchHHhhhcccccCCchhheeecCCCccEEEEE
Confidence 477788888732221111 1123448999997754
No 134
>PRK09752 adhesin; Provisional
Probab=31.17 E-value=8.7e+02 Score=27.98 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=11.6
Q ss_pred CcchhhHHHHHHHHHHhhcccccc
Q 048431 1 MDKFFSTLLYAFLLVLGTNNLLHS 24 (396)
Q Consensus 1 ~~~~~~~~~~~~l~~l~~~~~~~~ 24 (396)
|+.+|+..=++.|+..+..+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (1250)
T PRK09752 1 MRIIFLRKEYLSLLPSMIASLFSA 24 (1250)
T ss_pred CeEEEEehhhhhhhHHHHHHHhcc
Confidence 455555554445554444444443
No 135
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=30.99 E-value=41 Score=22.56 Aligned_cols=8 Identities=25% Similarity=-0.135 Sum_probs=3.8
Q ss_pred CcchhhHH
Q 048431 1 MDKFFSTL 8 (396)
Q Consensus 1 ~~~~~~~~ 8 (396)
|+|....+
T Consensus 1 MmKk~i~~ 8 (48)
T PRK10081 1 MVKKTIAA 8 (48)
T ss_pred ChHHHHHH
Confidence 55554433
No 136
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=30.34 E-value=59 Score=20.37 Aligned_cols=6 Identities=33% Similarity=0.130 Sum_probs=3.5
Q ss_pred cchhhH
Q 048431 2 DKFFST 7 (396)
Q Consensus 2 ~~~~~~ 7 (396)
||+++.
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 466654
No 137
>COG3015 CutF Uncharacterized lipoprotein NlpE involved in copper resistance [Cell envelope biogenesis, outer membrane / Inorganic ion transport and metabolism]
Probab=30.00 E-value=77 Score=27.06 Aligned_cols=42 Identities=21% Similarity=0.096 Sum_probs=29.5
Q ss_pred CcchhhHHHHHHHHHHhhcccccccccccEEEeeccCccCCC
Q 048431 1 MDKFFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNG 42 (396)
Q Consensus 1 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~v~d~Ga~~dg 42 (396)
|+|.....|.+++|.|+.|..-+......+....+-||.+-+
T Consensus 1 mvkk~i~tl~a~~l~l~gcnnr~~~~gt~v~k~v~Lga~~~~ 42 (178)
T COG3015 1 MVKKAIVTLMAVILTLMGCNNRAEKDGTWVMKEVYLGAREEP 42 (178)
T ss_pred CcHHHHHHHHHHHHHHhcCCchhhccCceEEEEEEecccccc
Confidence 666666667777788888877766566666777777877654
No 138
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=29.67 E-value=1.9e+02 Score=26.22 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=16.2
Q ss_pred cccHHHHHHHHHHHhhcCCCcEEEecCceEEE
Q 048431 44 TDSTQAFAKAWAAACASNESATIYVPKGRYLL 75 (396)
Q Consensus 44 ~d~t~aiq~Ai~~a~~~~~g~~v~iP~G~Y~~ 75 (396)
+|.+.-....++ ...+|.+--|.|.+
T Consensus 45 tde~Smmn~Y~~------kPAkv~VknGK~~V 70 (217)
T TIGR03656 45 NDSASMANDYFE------KPAKLIVKNGKMTV 70 (217)
T ss_pred CCchhhHHhhcc------CCcEEEEECCEEEE
Confidence 455554555552 35688888998744
No 139
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=28.45 E-value=54 Score=27.53 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=14.3
Q ss_pred CcchhhHHHHHHHHHHhhcccc
Q 048431 1 MDKFFSTLLYAFLLVLGTNNLL 22 (396)
Q Consensus 1 ~~~~~~~~~~~~l~~l~~~~~~ 22 (396)
++|+.+++|.+++.+|+.|...
T Consensus 1 ~r~~~s~~Lv~~~~~Lvsc~~p 22 (142)
T TIGR03042 1 LRSLASLLLVLLLTFLVSCSGP 22 (142)
T ss_pred ChhHHHHHHHHHHHHHHHcCCC
Confidence 4677777776666666666543
No 140
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=25.99 E-value=1.2e+02 Score=31.16 Aligned_cols=11 Identities=9% Similarity=0.150 Sum_probs=6.9
Q ss_pred CCCcEEEecCc
Q 048431 61 NESATIYVPKG 71 (396)
Q Consensus 61 ~~g~~v~iP~G 71 (396)
..|..+++.+.
T Consensus 50 ~~g~nivv~~~ 60 (499)
T PRK15346 50 NYGIPVVISPE 60 (499)
T ss_pred HhCCCEEECcc
Confidence 35667777764
No 141
>PF06316 Ail_Lom: Enterobacterial Ail/Lom protein; InterPro: IPR000758 Virulence-related outer membrane proteins are expressed in Gram-negative bacteria and are essential to bacterial survival within macrophages and for eukaryotic cell invasion. Members of this group include: PagC, required by Salmonella typhimurium for survival in macrophages and for virulence in mice [] Rck outer membrane protein of the S. typhimurium virulence plasmid [] Ail, a product of the Yersinia enterocolitica chromosome capable of mediating bacterial adherence to and invasion of epithelial cell lines [] OmpX from Escherichia coli that promotes adhesion to and entry into mammalian cells. It also has a role in the resistance against attack by the human complement system [] a Bacteriophage lambda outer membrane protein, Lom [] The crystal structure of OmpX from E. coli reveals that OmpX consists of an eight-stranded antiparallel all-next-neighbour beta barrel []. The structure shows two girdles of aromatic amino acid residues and a ribbon of nonpolar residues that attach to the membrane interior. The core of the barrel consists of an extended hydrogen-bonding network of highly conserved residues. OmpX thus resembles an inverse micelle. The OmpX structure shows that the membrane-spanning part of the protein is much better conserved than the extracellular loops. Moreover, these loops form a protruding beta sheet, the edge of which presumably binds to external proteins. It is suggested that this type of binding promotes cell adhesion and invasion and helps defend against the complement system. Although OmpX has the same beta-sheet topology as the structurally related outer membrane protein A (OmpA) IPR000498 from INTERPRO, their barrels differ with respect to the shear numbers and internal hydrogen-bonding networks.; GO: 0009279 cell outer membrane
Probab=24.99 E-value=62 Score=28.76 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=10.7
Q ss_pred CcchhhHHHHHHHHHH
Q 048431 1 MDKFFSTLLYAFLLVL 16 (396)
Q Consensus 1 ~~~~~~~~~~~~l~~l 16 (396)
|+|+...+|++++++.
T Consensus 1 mr~~~~~ils~~~~l~ 16 (199)
T PF06316_consen 1 MRKLCAAILSAAVLLA 16 (199)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 8888887776554433
No 142
>PRK13618 psbV cytochrome c-550; Provisional
Probab=23.82 E-value=1.3e+02 Score=26.01 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=13.8
Q ss_pred ccEEEeeccCccCCCCcccHHHHHHHHHHHhh
Q 048431 28 STIYNVLRCGAKGNGITDSTQAFAKAWAAACA 59 (396)
Q Consensus 28 ~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~~ 59 (396)
.+++....-|-.-+-+..+.++=++.|++.|+
T Consensus 33 t~Tv~~~~~g~tv~~s~~~~~~G~~lF~~~Ca 64 (163)
T PRK13618 33 TRTVPLNAQGKTVTLSLKQVKEGKRLFNYACA 64 (163)
T ss_pred cceeccCCCCCeeecChhhHHHHHHHHHHHHH
Confidence 33444434443333333444444555655443
No 143
>PF15284 PAGK: Phage-encoded virulence factor
Probab=23.73 E-value=42 Score=23.64 Aligned_cols=12 Identities=42% Similarity=0.445 Sum_probs=6.6
Q ss_pred CcchhhHHHHHH
Q 048431 1 MDKFFSTLLYAF 12 (396)
Q Consensus 1 ~~~~~~~~~~~~ 12 (396)
|.|+.+.+|.++
T Consensus 1 Mkk~ksifL~l~ 12 (61)
T PF15284_consen 1 MKKFKSIFLALV 12 (61)
T ss_pred ChHHHHHHHHHH
Confidence 666666444444
No 144
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=23.65 E-value=3.8e+02 Score=21.29 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=7.6
Q ss_pred ecCeEEEEEEEec
Q 048431 158 SNNIRINGLLSLN 170 (396)
Q Consensus 158 ~~nv~i~~~~i~~ 170 (396)
..+++++|+++.+
T Consensus 44 ~~~~~~~G~~~~~ 56 (146)
T smart00722 44 SNDVRVDGITIGG 56 (146)
T ss_pred CCCCEEECeEEEe
Confidence 3455666666655
No 145
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=22.51 E-value=93 Score=21.09 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=9.0
Q ss_pred CcchhhHHHHHHHH
Q 048431 1 MDKFFSTLLYAFLL 14 (396)
Q Consensus 1 ~~~~~~~~~~~~l~ 14 (396)
|+|.++++++++++
T Consensus 1 mlk~lkf~lv~iml 14 (60)
T PF10913_consen 1 MLKSLKFLLVLIML 14 (60)
T ss_pred ChhHHHHHHHHHHH
Confidence 78888766555433
No 146
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=21.36 E-value=73 Score=26.94 Aligned_cols=16 Identities=38% Similarity=0.523 Sum_probs=10.1
Q ss_pred CcchhhHHHHHHHHHH
Q 048431 1 MDKFFSTLLYAFLLVL 16 (396)
Q Consensus 1 ~~~~~~~~~~~~l~~l 16 (396)
||+++.++.+++|+.+
T Consensus 2 ~ms~~~~v~l~alls~ 17 (158)
T KOG4063|consen 2 MMSFLKTVILLALLSL 17 (158)
T ss_pred chHHHHHHHHHHHHHH
Confidence 6777776665555544
No 147
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=20.88 E-value=1.7e+02 Score=28.25 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=25.1
Q ss_pred CcchhhHHHHHHHHHHhhcccccccccccEEEeeccCccCCCCcccHHHHHHHHHHHh
Q 048431 1 MDKFFSTLLYAFLLVLGTNNLLHSSATSTIYNVLRCGAKGNGITDSTQAFAKAWAAAC 58 (396)
Q Consensus 1 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~v~d~Ga~~dg~~d~t~aiq~Ai~~a~ 58 (396)
|+|++..++.+.|++.+++++ .++..++.|-.|-.. .+...-..++.+++++.|
T Consensus 1 m~~~l~~~~~~all~~~~~~a---~~~t~~LtVytydSF-~~ewg~Gp~vk~~FE~~~ 54 (336)
T COG4143 1 MRRLLRALIGLALLVSAALGA---QAATPTLTVYTYDSF-ASEWGPGPKVKKAFEAEY 54 (336)
T ss_pred ChhhHHHHHHHHHHHHHhhHH---hhcCceEEEEEEeee-ecccCCcHHHHHHHHHHh
Confidence 777555444444443333221 222234444433321 112333457888887765
No 148
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=20.12 E-value=59 Score=21.28 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=7.9
Q ss_pred CcchhhHHHHHHHHHH
Q 048431 1 MDKFFSTLLYAFLLVL 16 (396)
Q Consensus 1 ~~~~~~~~~~~~l~~l 16 (396)
|+|++...++++.++|
T Consensus 1 MkKi~~~~i~~~~~~L 16 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLL 16 (46)
T ss_pred CcEEEEeHHHHHHHHH
Confidence 6666654444433333
No 149
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=20.01 E-value=2.4e+02 Score=24.48 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=12.5
Q ss_pred CCcEEEecCceEEEec
Q 048431 62 ESATIYVPKGRYLLGS 77 (396)
Q Consensus 62 ~g~~v~iP~G~Y~~~~ 77 (396)
....|||+.+.|.+.+
T Consensus 67 ~~~~v~F~~d~~~l~~ 82 (173)
T PRK10802 67 QNNIVYFDLDKYDIRS 82 (173)
T ss_pred cCCeEEecCCCccCCH
Confidence 3568999999997753
Done!