BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048433
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/280 (73%), Positives = 236/280 (84%), Gaps = 8/280 (2%)
Query: 1 MSFVFRGTRGDIESGFPG-FIAEQPAVRIHATRPVNVNSLAFLVIVLLLFMILNSHQMSP 59
MSFVFRG+RGD+ESGF G F+ E+ A+R+H RPVN NSLAFLV VLLLFMILNSHQM P
Sbjct: 1 MSFVFRGSRGDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
Query: 60 NFLLWLVVGVFLIATSLRMYATCQQLQAQARAHAAAASGLLSHTELRLHVPPSIAFATRG 119
NFLLWLV+GVFL+AT+LRMYATCQQLQA A+A AAAASGL SHTELRLHVPPSIA ATRG
Sbjct: 61 NFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATRG 120
Query: 120 RLQGLRLQLALLDREFDELDYDTLRALDSDNTSTTPSMSEEEINSLPVHKYKVPGPASES 179
RLQGLRLQLALLDREFD+LDY+TLRALDSDN STT SMSEEEIN+LPVHKYKV P +
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVSTT-SMSEEEINALPVHKYKVLDPEN-- 177
Query: 180 VGSSIRQPSSSAATPEQSKQESKKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQF 239
G S+ + +S++++ E+ A+ S K +EDELTC++CLEQV GE+VR+LPCLHQF
Sbjct: 178 -GCSLAKQASTSSSAEKMLD---SANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQF 233
Query: 240 HANCIDPWLRQRGTCPVCKFRMGSGWQENRESESDSSDMV 279
HA CIDPWLRQ+GTCPVCKFR SGWQE E + D+SDMV
Sbjct: 234 HAGCIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDASDMV 273
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQENRES 271
++E CTIC+E K + V LPC H FH NCI PWLR GTC +C+ + Q+ +
Sbjct: 391 DEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRNNT 450
Query: 272 ESDSSD 277
+DS++
Sbjct: 451 STDSAN 456
>sp|Q6AY01|RN133_RAT E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133
PE=2 SV=1
Length = 381
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 205 DGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRM--G 262
+G + S + +C IC E K E+VR L C H FH NCIDPW+ GTCP+CK +
Sbjct: 244 EGDEEVSPNADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHGTCPMCKCDILKA 303
Query: 263 SGWQENRESESDS 275
G Q + E SDS
Sbjct: 304 LGIQMDIEDGSDS 316
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 188 SSSAATPEQSKQESKKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPW 247
++ A + + + KK D T D C +C+E K ++VR LPC H FH +C+DPW
Sbjct: 237 AAKKAISKLTTRTVKKGDKETDPDFDH--CAVCIESYKQNDVVRVLPCKHVFHKSCVDPW 294
Query: 248 LRQRGTCPVCKFRM 261
L + TCP+CK +
Sbjct: 295 LSEHCTCPMCKLNI 308
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 188 SSSAATPEQSKQESKKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPW 247
++ A + + + KK D T D C +C+E K ++VR LPC H FH +C+DPW
Sbjct: 237 AAKKAISKLTTRTVKKGDKETDPDFDH--CAVCIESYKQNDVVRVLPCKHVFHKSCVDPW 294
Query: 248 LRQRGTCPVCKFRM 261
L + TCP+CK +
Sbjct: 295 LSEHCTCPMCKLNI 308
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 202 KKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRM 261
KK D T+S D C +C+E K ++VR LPC H FH +C+DPWL TCP+CK +
Sbjct: 265 KKGDKETESDFD--NCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNI 322
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 198 KQESKKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVC 257
K +K S + D C IC+E K + +R LPC H+FH NCIDPWL + TCP+C
Sbjct: 284 KIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCPMC 343
Query: 258 KF 259
K
Sbjct: 344 KL 345
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 188 SSSAATPEQSKQESKKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPW 247
++ A + + + KK D T D C +C+E K ++VR LPC H FH +C+DPW
Sbjct: 237 AAKKAISKLTTRTVKKGDKETDPDFDH--CAVCIESYKQNDVVRILPCKHVFHKSCVDPW 294
Query: 248 LRQRGTCPVCKFRM 261
L + TCP+CK +
Sbjct: 295 LSEHCTCPMCKLNI 308
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 198 KQESKKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVC 257
+Q + S S C ICLE+ G+ +R + CLH+FH NC+DPWL Q TCP+C
Sbjct: 253 RQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLC 312
Query: 258 KFRMGSG 264
F + G
Sbjct: 313 MFNITEG 319
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 209 KSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWL-RQRGTCPVCKFRMGSGWQE 267
K ++ C ICL++ + G+ +R LPC H +H C+DPWL + + TCPVCK ++ Q
Sbjct: 232 KKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS-QG 290
Query: 268 NRESESDSS 276
+ +SE+DSS
Sbjct: 291 DSDSETDSS 299
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 154 TPSMSEEEINSLPVHKYKVPGPASESVGSSIRQPSSSAATPEQSKQESKKADGSTKSSED 213
T +SE E+ LP++K+K A S +I P P + + T +ED
Sbjct: 252 TEGVSEAELGVLPLYKFK----AFHSNEKNITGPGKMVPIPINGLCLATE---RTLLAED 304
Query: 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264
C ICL + G + +LPC H FH+ CI WL+ R TCP+CK+ + G
Sbjct: 305 A-DCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKG 354
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 202 KKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRM 261
+K D T+S D C +C+E K ++VR LPC H FH +C+DPWL TCP+CK +
Sbjct: 264 RKGDKETESDFD--NCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNI 321
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 202 KKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRM 261
K+ D + D +C IC E K E+VR L C H FH NCIDPW+ GTCP+CK +
Sbjct: 243 KEGDEEVNPNAD--SCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHGTCPMCKCDI 300
Query: 262 --GSGWQENRESESDS 275
G Q + E +DS
Sbjct: 301 LKALGIQMDIEDGTDS 316
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 202 KKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
K+ D + D +C IC E K ++VR L C H FH NCIDPW+ GTCP+CK
Sbjct: 243 KEGDEEINPNGD--SCVICFEHYKPNDIVRILTCKHFFHKNCIDPWILSHGTCPICK 297
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 195 EQSKQESKKADGSTKSSEDELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQRGT 253
E+ + + + +T +SE+ +C++CL+ + GE VRSLP C H FH CID WL + G+
Sbjct: 174 EKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGS 233
Query: 254 CPVCK 258
CP+C+
Sbjct: 234 CPMCR 238
>sp|Q8WVZ7|RN133_HUMAN E3 ubiquitin-protein ligase RNF133 OS=Homo sapiens GN=RNF133 PE=2
SV=1
Length = 376
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 202 KKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
K+ D + D +C IC E+ K ++VR L C H FH NCIDPW+ GTCP+CK
Sbjct: 243 KEGDEEINPNGD--SCVICFERYKPNDIVRILTCKHFFHKNCIDPWILPHGTCPICK 297
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 195 EQSKQESKKA----------DGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCI 244
+ +++E+KKA G D C +C+E K +LVR LPC H FH CI
Sbjct: 232 QSNRKETKKAISQLQLHRVKKGEKGIDIDAENCAVCIENYKTKDLVRILPCKHIFHRLCI 291
Query: 245 DPWLRQRGTCPVCKF 259
DPWL + TCP+CK
Sbjct: 292 DPWLIEHRTCPMCKL 306
>sp|Q566M8|RN150_DANRE RING finger protein 150 OS=Danio rerio GN=rnf150 PE=2 SV=1
Length = 419
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 202 KKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRM 261
+K D T+S D C +C+E K ++VR LPC H FH C+DPWL TCP+CK +
Sbjct: 254 RKGDQETESDFDN--CAVCIEGYKPNDVVRILPCRHLFHKCCVDPWLVDHRTCPMCKMNI 311
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 217 CTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQRGTCPVCK 258
CTICL+ +K GE+ RSLP C H FH C+D WL + G+CP+C+
Sbjct: 176 CTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICR 218
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 208 TKSSEDELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQRGTCPVCK 258
T +S + ++C++CL+ + GE VRSLP C H FH CID WLR+ +CP+C+
Sbjct: 167 TDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 197 SKQESKKADGSTKSSEDEL-TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTC 254
+K++ K+ DE C ICL++ + G+ +R LPC H +H+ C+DPWL Q R TC
Sbjct: 209 TKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTC 268
Query: 255 PVCK 258
P+CK
Sbjct: 269 PICK 272
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 197 SKQESKKADGSTKSSEDEL-TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTC 254
+K++ K+ DE C ICL++ + G+ +R LPC H +H+ C+DPWL Q R TC
Sbjct: 209 TKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTC 268
Query: 255 PVCK 258
P+CK
Sbjct: 269 PICK 272
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 135 FDELDYDTLRALDSDNTSTTPSMSEEEINSLPVHKYKVPGPASESVGSSIRQPSSSAATP 194
+ +L + L+ L+ ++ S EE+ L + ++ +V ++I + +
Sbjct: 216 YPQLHFLALQGLNPSRHTSAVRESYEELLQL---EDRLGNVTRGAVQNTIERFTFPHKYK 272
Query: 195 EQSKQESKKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTC 254
++ Q+SK + S+ + CTICL ++ GE VR LPC+H FH C+D WL C
Sbjct: 273 KRRPQDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKC 332
Query: 255 PVCK 258
P+C+
Sbjct: 333 PICR 336
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 167 VHKYKVPGPASESVGSSIRQPSSSAAT--------PEQSK------QESKKADGSTKSSE 212
V +VP A E+ G +R S AAT P Q++ QE K K+
Sbjct: 172 VDMIRVPDWAFEAAGQEMRGISQDAATYHPGLYLTPAQTEAVEALIQELPKF--RLKAVP 229
Query: 213 DEL-TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
D+ C ICLE+ G VR LPC H FH CID WLR CP C+
Sbjct: 230 DDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNVKCPRCR 276
>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2
SV=1
Length = 784
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 207 STKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264
S S C ICLE+ G+ +R + CLH+FH C+DPWL Q TCP+C F + G
Sbjct: 262 SGSSCSSTPVCAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNIVEG 319
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 195 EQSKQESKKADG-----STKSSE-----DELTCTICLEQVKCGELVRSLPCLHQFHANCI 244
+ ++E+KK G + K E D C +C+E K +++R LPC H FH CI
Sbjct: 237 QSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFHRICI 296
Query: 245 DPWLRQRGTCPVCKF 259
DPWL TCP+CK
Sbjct: 297 DPWLLDHRTCPMCKL 311
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 209 KSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWL-RQRGTCPVCKFRM 261
K ++ C ICLE+ + G+ +R LPC H +H C+DPWL + + TCPVCK ++
Sbjct: 232 KKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 28/44 (63%)
Query: 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
L C +C E GE VR LPC H FH +CI PWL Q TCPVC+
Sbjct: 226 LECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 209 KSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWL-RQRGTCPVCKFRM 261
K ++ C ICLE+ + G+ +R LPC H +H C+DPWL + + TCPVCK ++
Sbjct: 232 KKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 195 EQSKQESKKADG-----STKSSE-----DELTCTICLEQVKCGELVRSLPCLHQFHANCI 244
+ ++E+KK G + K E D C +C+E K +++R LPC H FH CI
Sbjct: 233 QNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKHIFHRICI 292
Query: 245 DPWLRQRGTCPVCKF 259
DPWL TCP+CK
Sbjct: 293 DPWLLDHRTCPMCKL 307
>sp|G3X9R7|RN148_MOUSE RING finger protein 148 OS=Mus musculus GN=Rnf148 PE=2 SV=1
Length = 316
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 185 RQPSSSAATPEQSKQESKKA----------DGSTKSSEDELTCTICLEQVKCGELVRSLP 234
R +SS Q K + KKA DG + +E +C +C + K +++R L
Sbjct: 227 RVSNSSTRRQRQLKADVKKAIGQLQLRVLQDGDKELDPNEDSCVVCFDMYKAQDVIRILT 286
Query: 235 CLHQFHANCIDPWLRQRGTCPVCK 258
C H FH CIDPWL TCP+CK
Sbjct: 287 CKHFFHKTCIDPWLLAHRTCPMCK 310
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 28/44 (63%)
Query: 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
L C +C E GE VR LPC H FH +CI PWL Q TCPVC+
Sbjct: 226 LECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 28/44 (63%)
Query: 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
L C +C E GE VR LPC H FH +CI PWL Q TCPVC+
Sbjct: 225 LECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 268
>sp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana
GN=ATL71 PE=3 SV=1
Length = 197
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 194 PEQSKQESKKADGSTKSSEDELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQRG 252
P+ +E++ + K S C+ICL K +++R LP C H FH NC+DPWLR
Sbjct: 106 PKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHP 165
Query: 253 TCPVCK 258
TCPVC+
Sbjct: 166 TCPVCR 171
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 197 SKQESKKADGSTKSSEDEL-TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTC 254
+K++ K+ D+ C ICL++ + G+ +R LPC H +H+ C+DPWL Q R TC
Sbjct: 209 TKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTC 268
Query: 255 PVCK 258
P+CK
Sbjct: 269 PICK 272
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
TC++C+ + G +R LPC H++H +CID WL + TCP+C+
Sbjct: 569 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 184 IRQPSSSAATPEQSKQESKKADG-----STKSSEDEL-----TCTICLEQVKCGELVRSL 233
+R + + Q K ++KKA G + K + E+ +C +C+E K +LVR L
Sbjct: 237 LRNARAQSRKQRQLKADAKKAIGRLQLRTQKQGDKEIGPDGDSCAVCIELYKPNDLVRIL 296
Query: 234 PCLHQFHANCIDPWLRQRGTCPVCK 258
C H FH C+DPWL + TCP+CK
Sbjct: 297 TCNHVFHKTCVDPWLLEHRTCPMCK 321
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 217 CTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
C++C+ G +R LPCLH+FH +CID WL + TCPVC+
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCR 655
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
TC++C+ + G +R LPC H++H +CID WL + TCP+C+
Sbjct: 545 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 587
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 184 IRQPSSSAATPEQSKQESKKADG-----STKSSEDEL-----TCTICLEQVKCGELVRSL 233
+R + + Q K ++KKA G + K + E+ +C +C+E K +LVR L
Sbjct: 234 LRNARAQSRKQRQLKADAKKAIGRLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRIL 293
Query: 234 PCLHQFHANCIDPWLRQRGTCPVCK 258
C H FH C+DPWL + TCP+CK
Sbjct: 294 TCNHIFHKTCVDPWLLEHRTCPMCK 318
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 208 TKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRM 261
T SS C ICLE+ GE +R +PC H+FH C+DPWL Q TCP C+ +
Sbjct: 281 TLSSGSTSDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNI 334
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 198 KQESKKADG-----STKSSE-----DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPW 247
K E+KKA G + K + D +C +C+E K ++VR L C H FH NCIDPW
Sbjct: 231 KAEAKKAIGKLQLRTIKQGDKVLGPDGDSCAVCIEPYKPSDVVRILTCNHFFHKNCIDPW 290
Query: 248 LRQRGTCPVCK 258
L + TCP+CK
Sbjct: 291 LLEHRTCPMCK 301
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 135 FDELDYDTLRALDSDNTSTTPSMSEEEINSLPVHKYKVPGPASESVGSSIRQPSSSAATP 194
+ +L + L+ L+ ++ S EE+ L + ++ +V ++I + +
Sbjct: 215 YPQLHFLALQGLNPSRHTSAVRESYEELLQL---EDRLGNVTRGAVQNTIERFTFPHKYK 271
Query: 195 EQSKQESKKADGSTKSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTC 254
++ Q+ K + S+ + CTICL ++ GE VR LPC+H FH C+D WL C
Sbjct: 272 KRRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKC 331
Query: 255 PVCK 258
P+C+
Sbjct: 332 PICR 335
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 184 IRQPSSSAATPEQSKQESKKADG-----STKSSEDEL-----TCTICLEQVKCGELVRSL 233
+R + + Q K ++KKA G + K + E+ +C +C+E K +LVR L
Sbjct: 234 LRNARAQSRKQRQLKADAKKAIGKLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRIL 293
Query: 234 PCLHQFHANCIDPWLRQRGTCPVCK 258
C H FH C+DPWL + TCP+CK
Sbjct: 294 TCNHIFHKTCVDPWLLEHRTCPMCK 318
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
TC++C+ + G +R LPC H++H +CID WL + TCP+C+
Sbjct: 584 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 626
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 209 KSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWL-RQRGTCPVCKFRM 261
K ++ C ICL++ + G+ +R LPC H +H C+DPWL + + TCPVCK ++
Sbjct: 232 KKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 209 KSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWL-RQRGTCPVCKFRM 261
K ++ C ICL++ + G+ +R LPC H +H C+DPWL + + TCPVCK ++
Sbjct: 232 KKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 184 IRQPSSSAATPEQSKQESKKADG-----STKSSEDEL-----TCTICLEQVKCGELVRSL 233
+R + + Q K ++KKA G + K + E+ +C +C+E K +LVR L
Sbjct: 234 LRNARAQSRKQRQLKADAKKAIGRLQLRTLKQGDREIGPDGDSCAVCIELYKPNDLVRIL 293
Query: 234 PCLHQFHANCIDPWLRQRGTCPVCK 258
C H FH C+DPWL + TCP+CK
Sbjct: 294 TCNHIFHKTCVDPWLLEHRTCPMCK 318
>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2
Length = 377
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRM 261
TC +CL+ + +R LPC H+FH +C+DPWL + TCP+CKF +
Sbjct: 324 TCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCKFNV 369
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258
TC++C+ + G +R LPC H++H +CID WL + TCP+C+
Sbjct: 567 TCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 609
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,233,218
Number of Sequences: 539616
Number of extensions: 3718129
Number of successful extensions: 14442
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 285
Number of HSP's that attempted gapping in prelim test: 13760
Number of HSP's gapped (non-prelim): 835
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)