Query 048433
Match_columns 279
No_of_seqs 263 out of 2039
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.6 2.2E-15 4.7E-20 140.1 10.6 59 215-273 230-289 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 5.8E-15 1.2E-19 98.3 2.5 43 216-258 2-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.2 5.4E-12 1.2E-16 93.1 4.1 45 214-258 19-73 (73)
4 PHA02929 N1R/p28-like protein; 99.2 1.2E-11 2.6E-16 110.4 4.5 50 214-263 174-228 (238)
5 KOG0828 Predicted E3 ubiquitin 99.2 3.4E-11 7.5E-16 114.9 6.0 75 39-114 427-502 (636)
6 COG5540 RING-finger-containing 99.1 2.3E-11 4.9E-16 110.1 3.4 50 214-263 323-373 (374)
7 COG5243 HRD1 HRD ubiquitin lig 99.1 2.5E-11 5.4E-16 112.5 3.5 51 212-262 285-345 (491)
8 KOG0317 Predicted E3 ubiquitin 99.1 4.5E-11 9.7E-16 107.8 3.9 53 210-265 235-287 (293)
9 PF13920 zf-C3HC4_3: Zinc fing 99.1 5.8E-11 1.3E-15 81.1 3.2 47 214-263 2-49 (50)
10 PLN03208 E3 ubiquitin-protein 99.1 7.3E-11 1.6E-15 101.7 4.1 50 212-264 16-81 (193)
11 KOG0320 Predicted E3 ubiquitin 99.0 2.3E-10 5E-15 96.6 4.5 53 212-265 129-181 (187)
12 PF13923 zf-C3HC4_2: Zinc fing 99.0 2.3E-10 4.9E-15 74.1 3.2 39 217-257 1-39 (39)
13 KOG0823 Predicted E3 ubiquitin 99.0 2E-10 4.4E-15 100.7 3.6 53 211-266 44-99 (230)
14 cd00162 RING RING-finger (Real 98.9 7.2E-10 1.6E-14 72.3 3.4 44 216-261 1-45 (45)
15 PF15227 zf-C3HC4_4: zinc fing 98.9 1.3E-09 2.7E-14 71.9 3.0 38 217-257 1-42 (42)
16 KOG0802 E3 ubiquitin ligase [P 98.8 1.1E-09 2.5E-14 109.0 2.8 54 213-266 290-345 (543)
17 PHA02926 zinc finger-like prot 98.8 2E-09 4.3E-14 94.2 3.0 50 213-262 169-230 (242)
18 PF12861 zf-Apc11: Anaphase-pr 98.8 3E-09 6.6E-14 80.0 3.5 50 214-263 21-83 (85)
19 PF00097 zf-C3HC4: Zinc finger 98.8 5.2E-09 1.1E-13 68.2 3.2 39 217-257 1-41 (41)
20 smart00504 Ubox Modified RING 98.8 6.2E-09 1.3E-13 73.8 3.7 46 215-263 2-47 (63)
21 PF14634 zf-RING_5: zinc-RING 98.8 5.6E-09 1.2E-13 69.4 2.9 44 216-259 1-44 (44)
22 smart00184 RING Ring finger. E 98.7 1.5E-08 3.2E-13 63.7 3.2 38 217-257 1-39 (39)
23 TIGR00599 rad18 DNA repair pro 98.7 1.3E-08 2.8E-13 97.1 4.1 52 210-264 22-73 (397)
24 COG5574 PEX10 RING-finger-cont 98.5 6.3E-08 1.4E-12 86.6 3.0 51 212-265 213-265 (271)
25 KOG1734 Predicted RING-contain 98.5 5.6E-08 1.2E-12 87.1 1.6 54 212-265 222-284 (328)
26 PF13445 zf-RING_UBOX: RING-ty 98.4 1.8E-07 3.9E-12 61.9 2.9 34 217-251 1-35 (43)
27 KOG2930 SCF ubiquitin ligase, 98.4 1.6E-07 3.4E-12 72.6 2.2 50 211-260 43-106 (114)
28 COG5194 APC11 Component of SCF 98.4 2.3E-07 5E-12 68.5 2.9 28 235-262 54-81 (88)
29 KOG2164 Predicted E3 ubiquitin 98.3 2E-07 4.3E-12 90.2 2.3 50 214-266 186-240 (513)
30 KOG0287 Postreplication repair 98.3 1.2E-07 2.6E-12 87.4 0.1 53 211-266 20-72 (442)
31 PF04564 U-box: U-box domain; 98.3 4E-07 8.6E-12 67.1 2.8 49 213-264 3-52 (73)
32 KOG4265 Predicted E3 ubiquitin 98.3 4E-07 8.6E-12 84.7 3.3 58 212-272 288-346 (349)
33 KOG1493 Anaphase-promoting com 98.3 1.3E-07 2.8E-12 69.2 -0.4 49 214-262 20-81 (84)
34 TIGR00570 cdk7 CDK-activating 98.2 6.7E-07 1.4E-11 82.5 3.3 52 214-265 3-57 (309)
35 KOG2177 Predicted E3 ubiquitin 98.2 4.2E-07 9E-12 81.2 1.5 46 211-259 10-55 (386)
36 COG5432 RAD18 RING-finger-cont 98.2 5.4E-07 1.2E-11 81.6 2.2 49 213-264 24-72 (391)
37 KOG0311 Predicted E3 ubiquitin 98.2 1.7E-07 3.8E-12 86.8 -1.6 62 212-275 41-103 (381)
38 smart00744 RINGv The RING-vari 98.2 1.5E-06 3.3E-11 59.1 3.0 42 216-258 1-49 (49)
39 KOG0804 Cytoplasmic Zn-finger 98.1 1.1E-06 2.3E-11 83.9 2.6 50 212-263 173-223 (493)
40 KOG4172 Predicted E3 ubiquitin 98.1 3.9E-07 8.4E-12 62.6 -0.3 46 215-263 8-55 (62)
41 KOG0824 Predicted E3 ubiquitin 98.0 3E-06 6.5E-11 77.2 1.6 51 215-268 8-59 (324)
42 COG5219 Uncharacterized conser 97.9 2.5E-06 5.3E-11 87.4 0.7 51 212-262 1467-1523(1525)
43 PF11793 FANCL_C: FANCL C-term 97.9 2.4E-06 5.2E-11 62.5 0.3 49 215-263 3-67 (70)
44 KOG0825 PHD Zn-finger protein 97.9 5E-06 1.1E-10 83.8 1.8 52 212-263 121-172 (1134)
45 KOG1039 Predicted E3 ubiquitin 97.8 1.1E-05 2.5E-10 75.8 2.6 52 212-263 159-222 (344)
46 KOG0827 Predicted E3 ubiquitin 97.8 9.4E-06 2E-10 76.3 2.0 52 216-267 6-61 (465)
47 KOG1645 RING-finger-containing 97.7 2.3E-05 5E-10 74.1 3.1 49 213-261 3-55 (463)
48 KOG0978 E3 ubiquitin ligase in 97.6 1.4E-05 3E-10 80.8 0.8 49 214-265 643-692 (698)
49 PF14835 zf-RING_6: zf-RING of 97.6 1.2E-05 2.7E-10 57.2 -0.2 47 213-263 6-52 (65)
50 KOG4692 Predicted E3 ubiquitin 97.4 0.00014 3E-09 67.9 3.6 53 211-266 419-471 (489)
51 KOG4159 Predicted E3 ubiquitin 97.4 9.7E-05 2.1E-09 70.9 2.5 49 212-263 82-130 (398)
52 KOG4445 Uncharacterized conser 97.3 7.5E-05 1.6E-09 68.2 1.3 52 214-265 115-189 (368)
53 KOG1785 Tyrosine kinase negati 97.2 0.00011 2.4E-09 69.4 1.4 47 216-265 371-419 (563)
54 PF11789 zf-Nse: Zinc-finger o 97.2 0.00035 7.5E-09 49.0 2.9 41 214-256 11-53 (57)
55 KOG0297 TNF receptor-associate 97.1 0.00029 6.4E-09 67.8 2.5 54 211-266 18-71 (391)
56 KOG1941 Acetylcholine receptor 97.1 0.00026 5.7E-09 66.8 1.8 62 214-275 365-433 (518)
57 KOG1428 Inhibitor of type V ad 97.0 0.00036 7.9E-09 74.5 2.9 53 211-263 3483-3545(3738)
58 KOG2660 Locus-specific chromos 97.0 0.00016 3.5E-09 66.9 0.0 52 212-265 13-64 (331)
59 KOG2879 Predicted E3 ubiquitin 96.9 0.001 2.2E-08 60.3 3.9 49 213-263 238-288 (298)
60 PF14570 zf-RING_4: RING/Ubox 96.8 0.00059 1.3E-08 46.1 1.6 44 217-261 1-47 (48)
61 KOG3039 Uncharacterized conser 96.7 0.0022 4.8E-08 57.3 4.9 54 213-266 220-274 (303)
62 COG5152 Uncharacterized conser 96.6 0.00094 2E-08 57.8 1.7 47 214-263 196-242 (259)
63 COG5236 Uncharacterized conser 96.6 0.0021 4.6E-08 60.0 3.8 49 209-260 56-106 (493)
64 KOG1571 Predicted E3 ubiquitin 96.3 0.0028 6.1E-08 59.5 3.0 44 213-262 304-347 (355)
65 KOG4275 Predicted E3 ubiquitin 96.3 0.00087 1.9E-08 61.2 -0.7 43 214-263 300-343 (350)
66 KOG3970 Predicted E3 ubiquitin 96.2 0.0034 7.3E-08 55.4 2.8 50 213-263 49-106 (299)
67 PF10367 Vps39_2: Vacuolar sor 96.2 0.002 4.3E-08 50.0 1.3 32 213-245 77-108 (109)
68 PHA02862 5L protein; Provision 96.0 0.0053 1.1E-07 50.7 2.6 44 215-262 3-53 (156)
69 KOG1813 Predicted E3 ubiquitin 95.9 0.0028 6.1E-08 58.0 0.9 48 215-265 242-289 (313)
70 KOG0801 Predicted E3 ubiquitin 95.9 0.0026 5.7E-08 53.4 0.4 29 213-241 176-204 (205)
71 KOG1002 Nucleotide excision re 95.9 0.0043 9.3E-08 60.9 1.9 56 212-270 534-594 (791)
72 PF12906 RINGv: RING-variant d 95.8 0.0077 1.7E-07 40.5 2.4 40 217-257 1-47 (47)
73 KOG1814 Predicted E3 ubiquitin 95.8 0.0048 1E-07 58.8 1.9 45 215-259 185-237 (445)
74 PHA02825 LAP/PHD finger-like p 95.6 0.013 2.9E-07 49.2 3.7 46 213-262 7-59 (162)
75 COG5175 MOT2 Transcriptional r 95.5 0.0088 1.9E-07 55.8 2.5 54 213-266 13-68 (480)
76 PHA03096 p28-like protein; Pro 95.5 0.0068 1.5E-07 55.9 1.7 36 215-250 179-219 (284)
77 KOG1952 Transcription factor N 95.4 0.0086 1.9E-07 61.6 2.4 46 213-258 190-243 (950)
78 PF05883 Baculo_RING: Baculovi 95.4 0.01 2.2E-07 48.5 2.4 38 214-251 26-69 (134)
79 KOG4739 Uncharacterized protei 95.1 0.0082 1.8E-07 53.6 0.9 47 216-265 5-51 (233)
80 KOG0826 Predicted E3 ubiquitin 95.0 0.02 4.4E-07 53.2 3.1 47 212-261 298-345 (357)
81 KOG4185 Predicted E3 ubiquitin 94.9 0.015 3.3E-07 53.5 2.1 47 215-261 4-54 (296)
82 PF07800 DUF1644: Protein of u 94.7 0.032 7E-07 46.8 3.3 55 213-267 1-96 (162)
83 COG5222 Uncharacterized conser 94.6 0.017 3.8E-07 53.1 1.6 42 215-259 275-318 (427)
84 KOG3002 Zn finger protein [Gen 94.5 0.024 5.2E-07 52.7 2.4 46 211-263 45-92 (299)
85 KOG3268 Predicted E3 ubiquitin 94.3 0.027 5.9E-07 48.2 2.1 53 213-265 164-231 (234)
86 PF04641 Rtf2: Rtf2 RING-finge 94.2 0.061 1.3E-06 48.9 4.5 54 212-266 111-165 (260)
87 PF08746 zf-RING-like: RING-li 94.1 0.028 6.1E-07 37.0 1.5 41 217-257 1-43 (43)
88 KOG0825 PHD Zn-finger protein 94.1 0.054 1.2E-06 55.6 4.0 58 213-270 95-162 (1134)
89 KOG0827 Predicted E3 ubiquitin 94.0 0.0041 8.9E-08 58.9 -3.7 50 215-264 197-247 (465)
90 KOG2114 Vacuolar assembly/sort 93.9 0.029 6.3E-07 57.9 1.7 40 215-259 841-880 (933)
91 PF14447 Prok-RING_4: Prokaryo 93.8 0.034 7.3E-07 38.6 1.4 46 214-264 7-52 (55)
92 KOG1001 Helicase-like transcri 93.5 0.03 6.4E-07 57.5 1.1 50 215-268 455-506 (674)
93 KOG1940 Zn-finger protein [Gen 93.0 0.043 9.3E-07 50.3 1.2 44 216-259 160-204 (276)
94 KOG0298 DEAD box-containing he 91.9 0.045 9.7E-07 58.9 -0.1 43 215-259 1154-1196(1394)
95 KOG4367 Predicted Zn-finger pr 91.9 0.14 3E-06 49.6 3.1 36 212-250 2-37 (699)
96 KOG1100 Predicted E3 ubiquitin 91.8 0.085 1.8E-06 46.6 1.6 40 217-263 161-201 (207)
97 PF05290 Baculo_IE-1: Baculovi 91.7 0.14 3.1E-06 41.8 2.6 51 214-267 80-137 (140)
98 PF10272 Tmpp129: Putative tra 91.3 0.28 6.1E-06 46.7 4.5 28 235-262 311-351 (358)
99 KOG2034 Vacuolar sorting prote 90.9 0.11 2.4E-06 54.1 1.4 36 212-248 815-850 (911)
100 KOG2932 E3 ubiquitin ligase in 90.1 0.13 2.8E-06 47.7 1.0 47 215-265 91-137 (389)
101 KOG2817 Predicted E3 ubiquitin 89.8 0.25 5.4E-06 47.2 2.8 47 213-259 333-382 (394)
102 PF14446 Prok-RING_1: Prokaryo 89.7 0.45 9.7E-06 32.9 3.2 39 214-256 5-44 (54)
103 PF03854 zf-P11: P-11 zinc fin 89.6 0.12 2.7E-06 34.6 0.4 44 216-264 4-48 (50)
104 KOG0309 Conserved WD40 repeat- 89.4 0.2 4.4E-06 51.4 1.9 40 216-256 1030-1069(1081)
105 COG5183 SSM4 Protein involved 88.4 0.4 8.7E-06 49.7 3.3 53 212-265 10-69 (1175)
106 KOG1812 Predicted E3 ubiquitin 87.6 0.2 4.4E-06 48.2 0.6 37 214-250 146-183 (384)
107 KOG1609 Protein involved in mR 87.1 0.51 1.1E-05 43.3 2.9 51 214-264 78-136 (323)
108 KOG3053 Uncharacterized conser 86.7 0.32 7E-06 44.0 1.3 52 211-262 17-82 (293)
109 KOG3800 Predicted E3 ubiquitin 86.7 0.53 1.1E-05 43.3 2.7 48 216-263 2-52 (300)
110 KOG4362 Transcriptional regula 85.9 0.2 4.4E-06 51.1 -0.5 50 214-266 21-73 (684)
111 KOG3899 Uncharacterized conser 85.7 0.42 9.2E-06 44.0 1.5 30 235-264 325-367 (381)
112 PLN02189 cellulose synthase 85.7 0.95 2.1E-05 48.4 4.3 49 214-262 34-87 (1040)
113 KOG3579 Predicted E3 ubiquitin 84.7 0.62 1.3E-05 42.8 2.1 40 212-252 266-307 (352)
114 PLN02436 cellulose synthase A 82.0 1.6 3.4E-05 47.0 4.1 48 215-262 37-89 (1094)
115 COG5220 TFB3 Cdk activating ki 81.8 0.72 1.6E-05 41.4 1.3 48 213-260 9-62 (314)
116 KOG0269 WD40 repeat-containing 81.7 1.3 2.7E-05 45.8 3.1 41 215-256 780-820 (839)
117 PF02891 zf-MIZ: MIZ/SP-RING z 81.3 2 4.4E-05 29.1 3.1 43 215-260 3-50 (50)
118 KOG1812 Predicted E3 ubiquitin 81.2 0.68 1.5E-05 44.6 1.0 43 215-257 307-351 (384)
119 KOG1829 Uncharacterized conser 81.1 0.54 1.2E-05 47.4 0.3 43 214-259 511-558 (580)
120 KOG3161 Predicted E3 ubiquitin 78.7 0.72 1.6E-05 46.8 0.3 43 214-259 11-54 (861)
121 KOG0802 E3 ubiquitin ligase [P 78.5 1.7 3.7E-05 43.7 2.9 50 213-269 478-527 (543)
122 PF14569 zf-UDP: Zinc-binding 74.3 4.9 0.00011 29.9 3.6 52 214-265 9-65 (80)
123 PLN02638 cellulose synthase A 73.8 5.4 0.00012 43.1 5.2 48 215-262 18-70 (1079)
124 KOG1815 Predicted E3 ubiquitin 73.7 1.9 4.2E-05 42.2 1.8 36 213-250 69-104 (444)
125 PLN02400 cellulose synthase 72.4 3.6 7.8E-05 44.4 3.5 49 214-262 36-89 (1085)
126 KOG4718 Non-SMC (structural ma 71.0 2.2 4.7E-05 37.7 1.3 43 214-258 181-223 (235)
127 PLN02915 cellulose synthase A 70.6 6.5 0.00014 42.4 4.9 49 214-262 15-68 (1044)
128 KOG2068 MOT2 transcription fac 69.7 4.1 8.9E-05 38.3 2.9 50 215-265 250-301 (327)
129 KOG2066 Vacuolar assembly/sort 69.0 2.1 4.6E-05 44.4 0.9 43 214-257 784-830 (846)
130 PF07191 zinc-ribbons_6: zinc- 67.9 0.66 1.4E-05 33.8 -2.1 40 215-262 2-41 (70)
131 PF10571 UPF0547: Uncharacteri 67.3 2.7 5.7E-05 24.6 0.7 22 216-239 2-24 (26)
132 PF07123 PsbW: Photosystem II 66.8 5.2 0.00011 32.9 2.6 25 56-80 100-124 (138)
133 KOG0824 Predicted E3 ubiquitin 65.1 2.4 5.2E-05 39.3 0.4 51 213-265 104-154 (324)
134 PF06844 DUF1244: Protein of u 65.0 3.7 8.1E-05 29.5 1.2 12 238-249 11-22 (68)
135 PF11241 DUF3043: Protein of u 64.9 12 0.00026 32.0 4.6 45 20-67 61-106 (170)
136 KOG3842 Adaptor protein Pellin 63.7 7.7 0.00017 36.4 3.4 51 212-262 339-414 (429)
137 PF07219 HemY_N: HemY protein 63.0 35 0.00075 26.5 6.6 47 26-79 3-50 (108)
138 PLN02195 cellulose synthase A 63.0 9.2 0.0002 41.0 4.2 48 215-262 7-59 (977)
139 COG5109 Uncharacterized conser 59.8 6.8 0.00015 36.7 2.3 47 212-258 334-383 (396)
140 PF15128 T_cell_tran_alt: T-ce 59.5 16 0.00035 27.6 3.8 24 47-79 26-49 (92)
141 PF07975 C1_4: TFIIH C1-like d 58.0 8.1 0.00018 26.4 1.9 41 217-257 2-49 (51)
142 PF10852 DUF2651: Protein of u 57.5 20 0.00043 26.9 4.0 30 39-68 30-59 (82)
143 PLN00077 photosystem II reacti 57.0 7.9 0.00017 31.1 1.9 24 56-79 89-112 (128)
144 PF05605 zf-Di19: Drought indu 56.6 4.3 9.4E-05 27.6 0.4 38 214-261 2-41 (54)
145 PF01363 FYVE: FYVE zinc finge 56.6 6.5 0.00014 27.8 1.3 36 213-248 8-44 (69)
146 PF13901 DUF4206: Domain of un 55.3 8.4 0.00018 33.7 2.1 41 214-259 152-197 (202)
147 PF06667 PspB: Phage shock pro 54.0 20 0.00044 26.5 3.6 16 39-54 3-18 (75)
148 KOG3799 Rab3 effector RIM1 and 52.6 3.7 8E-05 33.8 -0.5 50 211-260 62-116 (169)
149 smart00249 PHD PHD zinc finger 52.4 9.1 0.0002 24.0 1.4 31 216-246 1-31 (47)
150 PLN00082 photosystem II reacti 51.0 15 0.00032 26.3 2.3 23 56-78 28-50 (67)
151 PF05399 EVI2A: Ectropic viral 50.4 29 0.00062 30.8 4.5 55 39-103 131-187 (227)
152 PHA02688 ORF059 IMV protein VP 50.1 21 0.00045 33.5 3.8 18 56-73 304-321 (323)
153 PF04216 FdhE: Protein involve 50.0 2.7 5.9E-05 38.7 -1.9 46 214-260 172-220 (290)
154 PLN00092 photosystem I reactio 48.2 9.9 0.00021 30.8 1.2 25 56-80 99-123 (137)
155 COG5416 Uncharacterized integr 48.1 18 0.0004 27.9 2.7 25 41-65 32-56 (98)
156 PRK09458 pspB phage shock prot 48.1 24 0.00053 26.0 3.2 14 39-52 3-16 (75)
157 KOG3113 Uncharacterized conser 47.8 18 0.00039 33.0 2.9 55 212-268 109-164 (293)
158 COG3071 HemY Uncharacterized e 47.4 72 0.0016 30.9 7.1 49 26-81 28-77 (400)
159 KOG3005 GIY-YIG type nuclease 47.3 11 0.00023 34.6 1.4 46 215-260 183-241 (276)
160 PF05814 DUF843: Baculovirus p 47.2 72 0.0016 24.0 5.6 42 40-81 4-46 (83)
161 KOG2807 RNA polymerase II tran 47.0 17 0.00036 34.3 2.7 44 216-259 332-375 (378)
162 PF00628 PHD: PHD-finger; Int 47.0 12 0.00027 24.6 1.4 44 216-259 1-50 (51)
163 PF04710 Pellino: Pellino; In 46.7 6.5 0.00014 37.9 0.0 43 215-260 278-337 (416)
164 KOG3039 Uncharacterized conser 46.4 10 0.00023 34.3 1.3 32 215-249 44-75 (303)
165 PLN02248 cellulose synthase-li 46.2 19 0.00042 39.2 3.3 35 233-267 148-182 (1135)
166 KOG4185 Predicted E3 ubiquitin 46.0 3.9 8.4E-05 37.5 -1.6 47 214-260 207-265 (296)
167 PF03213 Pox_P35: Poxvirus P35 46.0 27 0.00058 32.8 3.9 18 56-73 306-323 (325)
168 PF06906 DUF1272: Protein of u 46.0 31 0.00068 24.1 3.2 46 216-264 7-54 (57)
169 PF13719 zinc_ribbon_5: zinc-r 42.7 15 0.00032 23.1 1.2 13 216-228 4-16 (37)
170 PF04710 Pellino: Pellino; In 42.4 8.3 0.00018 37.2 0.0 50 214-263 328-402 (416)
171 COG3492 Uncharacterized protei 42.2 12 0.00027 28.6 0.9 13 238-250 42-54 (104)
172 TIGR00622 ssl1 transcription f 42.2 27 0.00059 27.8 2.9 43 216-258 57-110 (112)
173 KOG2113 Predicted RNA binding 42.0 27 0.00058 32.9 3.2 43 214-261 343-386 (394)
174 PF13829 DUF4191: Domain of un 42.0 71 0.0015 28.6 5.8 13 60-72 51-63 (224)
175 KOG0956 PHD finger protein AF1 40.8 9.9 0.00022 39.2 0.3 49 215-263 118-183 (900)
176 TIGR00540 hemY_coli hemY prote 40.4 61 0.0013 31.0 5.6 48 25-79 27-75 (409)
177 KOG4451 Uncharacterized conser 40.3 18 0.0004 32.4 1.8 28 238-265 250-277 (286)
178 PRK07353 F0F1 ATP synthase sub 39.3 50 0.0011 26.6 4.2 28 34-68 4-31 (140)
179 cd00065 FYVE FYVE domain; Zinc 39.2 21 0.00045 24.0 1.6 35 215-249 3-38 (57)
180 smart00064 FYVE Protein presen 39.1 23 0.0005 24.8 1.9 36 214-249 10-46 (68)
181 smart00132 LIM Zinc-binding do 38.9 36 0.00079 20.3 2.6 36 217-261 2-37 (39)
182 PF10083 DUF2321: Uncharacteri 38.5 19 0.00042 30.3 1.6 31 236-269 27-57 (158)
183 PF10717 ODV-E18: Occlusion-de 38.3 28 0.00061 26.2 2.3 15 31-45 17-31 (85)
184 PF10146 zf-C4H2: Zinc finger- 38.2 22 0.00048 31.9 2.1 27 239-265 196-222 (230)
185 TIGR02976 phageshock_pspB phag 37.0 54 0.0012 24.2 3.6 14 39-52 3-16 (75)
186 PF04423 Rad50_zn_hook: Rad50 36.8 12 0.00027 25.3 0.2 12 252-263 21-32 (54)
187 PF04835 Pox_A9: A9 protein co 36.0 82 0.0018 21.7 4.0 20 33-52 16-35 (54)
188 PRK10747 putative protoheme IX 33.9 81 0.0018 30.1 5.3 48 25-79 27-75 (398)
189 COG4847 Uncharacterized protei 33.5 43 0.00094 25.9 2.6 37 214-251 6-42 (103)
190 PF06750 DiS_P_DiS: Bacterial 32.9 27 0.00058 26.7 1.5 37 216-264 35-71 (92)
191 PF10235 Cript: Microtubule-as 32.3 31 0.00068 26.4 1.8 39 215-265 45-83 (90)
192 PRK11088 rrmA 23S rRNA methylt 32.1 29 0.00063 31.3 1.8 25 215-239 3-27 (272)
193 PF14311 DUF4379: Domain of un 31.0 29 0.00063 23.5 1.3 22 235-257 34-55 (55)
194 KOG4430 Topoisomerase I-bindin 30.5 18 0.00039 36.4 0.2 59 212-270 258-317 (553)
195 cd00350 rubredoxin_like Rubred 30.3 29 0.00063 21.1 1.0 10 250-259 16-25 (33)
196 KOG1729 FYVE finger containing 30.1 10 0.00023 35.1 -1.4 38 215-252 215-252 (288)
197 PF00412 LIM: LIM domain; Int 30.1 56 0.0012 21.7 2.6 39 217-264 1-39 (58)
198 KOG3726 Uncharacterized conser 29.7 23 0.0005 36.5 0.8 61 215-278 655-716 (717)
199 PF13717 zinc_ribbon_4: zinc-r 29.4 28 0.00062 21.7 0.9 13 216-228 4-16 (36)
200 PF12773 DZR: Double zinc ribb 29.0 39 0.00083 22.2 1.6 27 239-265 14-43 (50)
201 PRK03564 formate dehydrogenase 28.6 30 0.00065 32.5 1.3 45 213-259 186-234 (309)
202 KOG2169 Zn-finger transcriptio 28.4 29 0.00063 35.7 1.3 42 215-263 307-357 (636)
203 PHA02849 putative transmembran 28.0 1.1E+02 0.0025 22.7 4.0 22 44-65 27-48 (82)
204 PF04277 OAD_gamma: Oxaloaceta 27.9 1E+02 0.0023 22.2 3.9 13 40-52 7-19 (79)
205 CHL00118 atpG ATP synthase CF0 27.8 98 0.0021 25.6 4.2 19 34-52 21-39 (156)
206 PF09125 COX2-transmemb: Cytoc 27.6 65 0.0014 20.4 2.3 15 38-52 16-30 (38)
207 PF05366 Sarcolipin: Sarcolipi 27.3 64 0.0014 19.3 2.1 23 31-53 5-27 (31)
208 KOG1815 Predicted E3 ubiquitin 27.0 20 0.00044 35.1 -0.1 38 214-251 226-268 (444)
209 KOG2231 Predicted E3 ubiquitin 26.6 39 0.00086 34.9 1.8 44 216-262 2-52 (669)
210 PF14002 YniB: YniB-like prote 26.6 2.7E+02 0.0059 23.7 6.5 36 66-101 85-122 (166)
211 COG4459 NapE Periplasmic nitra 26.2 1.1E+02 0.0023 21.5 3.3 38 28-66 12-50 (62)
212 COG3813 Uncharacterized protei 26.2 66 0.0014 23.7 2.4 45 217-264 8-54 (84)
213 PF10497 zf-4CXXC_R1: Zinc-fin 26.1 75 0.0016 24.9 3.0 24 236-259 37-69 (105)
214 PF11125 DUF2830: Protein of u 26.0 2.1E+02 0.0047 19.3 4.7 33 37-77 18-50 (54)
215 KOG1819 FYVE finger-containing 25.6 49 0.0011 33.1 2.2 34 212-245 899-933 (990)
216 COG5081 Predicted membrane pro 25.5 1.3E+02 0.0029 25.3 4.5 34 45-78 126-159 (180)
217 KOG1356 Putative transcription 25.3 30 0.00064 36.6 0.7 49 214-263 229-283 (889)
218 TIGR01562 FdhE formate dehydro 25.3 17 0.00037 34.0 -0.9 46 214-260 184-233 (305)
219 PF11044 TMEMspv1-c74-12: Plec 25.2 1.8E+02 0.004 19.3 4.1 15 73-87 20-34 (49)
220 PF02318 FYVE_2: FYVE-type zin 24.8 47 0.001 26.3 1.6 45 214-259 54-102 (118)
221 KOG4218 Nuclear hormone recept 24.7 31 0.00068 32.8 0.7 48 212-260 13-76 (475)
222 PF08999 SP_C-Propep: Surfacta 24.6 1.2E+02 0.0025 22.9 3.5 26 27-52 23-49 (93)
223 PF05715 zf-piccolo: Piccolo Z 24.4 54 0.0012 23.2 1.6 15 251-265 2-16 (61)
224 TIGR00764 lon_rel lon-related 24.2 1.4E+02 0.003 30.7 5.3 43 37-81 111-153 (608)
225 PF08636 Pkr1: ER protein Pkr1 24.1 3E+02 0.0065 20.3 6.2 29 58-86 45-73 (75)
226 COG4420 Predicted membrane pro 23.9 2.6E+02 0.0056 24.4 6.1 9 62-70 69-77 (191)
227 PF04819 DUF716: Family of unk 23.7 1.3E+02 0.0027 24.7 4.0 50 34-83 33-82 (137)
228 PF13832 zf-HC5HC2H_2: PHD-zin 23.5 72 0.0016 24.5 2.5 32 214-247 55-88 (110)
229 PF04442 CtaG_Cox11: Cytochrom 23.5 31 0.00068 29.0 0.4 26 10-35 44-70 (152)
230 PRK12585 putative monovalent c 23.4 1.5E+02 0.0034 25.9 4.6 27 25-51 34-60 (197)
231 PF13571 DUF4133: Domain of un 23.3 89 0.0019 24.2 2.8 29 42-74 26-54 (96)
232 smart00647 IBR In Between Ring 23.2 26 0.00057 23.8 -0.1 18 230-247 40-58 (64)
233 PF11014 DUF2852: Protein of u 22.8 1.3E+02 0.0028 24.2 3.7 18 60-77 18-35 (115)
234 PHA00027 lys lysis protein 22.4 2.7E+02 0.0058 19.2 4.6 21 57-77 34-54 (58)
235 PF07649 C1_3: C1-like domain; 22.3 63 0.0014 19.0 1.5 29 216-244 2-30 (30)
236 KOG1889 Putative phosphoinosit 22.3 1.6E+02 0.0034 29.9 5.0 73 5-79 482-560 (579)
237 PF10857 DUF2701: Protein of u 22.2 1.1E+02 0.0025 21.7 2.9 28 41-68 5-32 (63)
238 PF13239 2TM: 2TM domain 22.1 2.4E+02 0.0053 20.6 5.0 14 66-79 49-62 (83)
239 KOG2979 Protein involved in DN 21.9 48 0.001 30.2 1.3 42 214-257 176-219 (262)
240 PHA01815 hypothetical protein 21.8 2.5E+02 0.0053 18.8 4.3 11 38-48 12-22 (55)
241 PF14169 YdjO: Cold-inducible 21.6 44 0.00096 23.5 0.8 16 251-266 39-54 (59)
242 PRK05759 F0F1 ATP synthase sub 21.4 1.3E+02 0.0029 24.5 3.8 18 35-52 4-21 (156)
243 KOG4443 Putative transcription 20.6 55 0.0012 33.7 1.5 28 234-261 40-72 (694)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.2e-15 Score=140.08 Aligned_cols=59 Identities=51% Similarity=0.994 Sum_probs=53.1
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCC-CcccccccCCCCCCCCCCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGT-CPVCKFRMGSGWQENRESES 273 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~-CP~CR~~i~~~~~~~~~~~~ 273 (279)
.+|+||+|+|++|+.++.|||+|.||..||++||.+..+ ||+||+.+.........+|+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~ 289 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSED 289 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCC
Confidence 489999999999999999999999999999999998755 99999999988877666663
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.51 E-value=5.8e-15 Score=98.28 Aligned_cols=43 Identities=51% Similarity=1.218 Sum_probs=40.2
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccc
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR 258 (279)
+|+||++.+..++.+..++|||.||.+||.+|++++.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999888999999999999999999999999999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.25 E-value=5.4e-12 Score=93.13 Aligned_cols=45 Identities=40% Similarity=0.908 Sum_probs=35.7
Q ss_pred cccccccccccccC----------ceeEEeCCCCcccHhhHHHHHhcCCCCcccc
Q 048433 214 ELTCTICLEQVKCG----------ELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258 (279)
Q Consensus 214 ~~~C~ICle~~~~~----------~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR 258 (279)
+..|+||++.+... ..+...+|||.||..||.+|++.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34599999999322 2344567999999999999999999999997
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.20 E-value=1.2e-11 Score=110.40 Aligned_cols=50 Identities=38% Similarity=0.800 Sum_probs=40.8
Q ss_pred cccccccccccccCce-----eEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 214 ELTCTICLEQVKCGEL-----VRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~-----v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
+.+|+||++.+..+.. ....+|+|.||..||.+|++.+.+||+||..+..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence 4589999998775431 2334699999999999999999999999998763
No 5
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.4e-11 Score=114.87 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhH-HHhcCCCccccccccCCCcch
Q 048433 39 LAFLVIVLLLFMILNSHQMSPNFLLWLVVGVFLIATSLRMYATCQQLQAQARAHA-AAASGLLSHTELRLHVPPSIA 114 (279)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~-~~~~g~l~~~~~r~~~~~s~~ 114 (279)
-+|++.++++|++|+|..|+.-|-....-.++++..+.++..+.+.+... .++. ......+|.|.+|+..|--++
T Consensus 427 rf~fm~lv~~~~~l~s~~wp~q~r~yf~~iLif~~~SfWIPQIv~Nvvrg-~SR~Pl~w~yIlG~Tv~Rl~~plyVF 502 (636)
T KOG0828|consen 427 RFLFMYLVVCIASLYSAFWPVQFRNYFIPILIFMYYSFWIPQIVANVVRG-DSRKPLHWYYILGMTVTRLAIPLYVF 502 (636)
T ss_pred hHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCCcchhhhhhHhHHhhhcceEEE
Confidence 46777888999999999999999999988888888888888877766533 3332 334566667777777665443
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.3e-11 Score=110.12 Aligned_cols=50 Identities=36% Similarity=0.949 Sum_probs=46.1
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHh-cCCCCcccccccCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR-QRGTCPVCKFRMGS 263 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~~ 263 (279)
..+|+|||+.|..++.++.|||.|.||..|+.+|+. -+..||+||..+++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 358999999999999999999999999999999998 57789999999875
No 7
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.5e-11 Score=112.46 Aligned_cols=51 Identities=33% Similarity=0.881 Sum_probs=42.9
Q ss_pred CCccccccccccc-ccC---------ceeEEeCCCCcccHhhHHHHHhcCCCCcccccccC
Q 048433 212 EDELTCTICLEQV-KCG---------ELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMG 262 (279)
Q Consensus 212 ~e~~~C~ICle~~-~~~---------~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~ 262 (279)
.+|..|.||++++ ..+ ....+|||||.||.+|++.|++++.+||+||.++-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 4567999999994 433 13468999999999999999999999999999944
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.5e-11 Score=107.77 Aligned_cols=53 Identities=28% Similarity=0.693 Sum_probs=45.3
Q ss_pred CCCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 210 SSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 210 ~~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
..+....|.+||+... +...+||||.||..||..|...+..||+||.++++..
T Consensus 235 i~~a~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRS---NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCCceEEEecCCC---CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 3455678999999876 4457899999999999999999999999999987654
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.10 E-value=5.8e-11 Score=81.06 Aligned_cols=47 Identities=34% Similarity=0.834 Sum_probs=39.8
Q ss_pred cccccccccccccCceeEEeCCCCc-ccHhhHHHHHhcCCCCcccccccCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQ-FHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
+..|.||++... .+..+||||. ||..|+.+|++.+..||+||+++.+
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 457999998755 5778999999 9999999999999999999998853
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.09 E-value=7.3e-11 Score=101.69 Aligned_cols=50 Identities=34% Similarity=0.725 Sum_probs=40.6
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc----------------CCCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----------------RGTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----------------~~~CP~CR~~i~~~ 264 (279)
.++.+|+||++.+.. ...++|||.||..||.+|+.. +..||+||..+...
T Consensus 16 ~~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 356789999998873 356789999999999999852 34699999988654
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.3e-10 Score=96.61 Aligned_cols=53 Identities=30% Similarity=0.628 Sum_probs=44.5
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
+....|+|||+.+.+... ....|||+||..||+..++....||+|+++|..++
T Consensus 129 ~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 345789999999986432 44779999999999999999999999999887654
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.01 E-value=2.3e-10 Score=74.12 Aligned_cols=39 Identities=41% Similarity=1.034 Sum_probs=33.3
Q ss_pred ccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCccc
Q 048433 217 CTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVC 257 (279)
Q Consensus 217 C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~C 257 (279)
|+||++.+.. .+..++|||.||.+|+.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998884 44678999999999999999998899998
No 13
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2e-10 Score=100.74 Aligned_cols=53 Identities=30% Similarity=0.594 Sum_probs=42.5
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc---CCCCcccccccCCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ---RGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~---~~~CP~CR~~i~~~~~ 266 (279)
+....+|.|||+.-+ +.++..|||.||+.||.+||.. .+.||+||..|..+..
T Consensus 44 ~~~~FdCNICLd~ak---dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAK---DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCCceeeeeeccccC---CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 445678999999877 3345669999999999999975 4559999998876654
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.94 E-value=7.2e-10 Score=72.32 Aligned_cols=44 Identities=48% Similarity=1.133 Sum_probs=36.5
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhc-CCCCccccccc
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRM 261 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i 261 (279)
+|+||++.+. +.....+|||.||..|+..|+++ ...||+||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 34455569999999999999997 77899998764
No 15
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.88 E-value=1.3e-09 Score=71.93 Aligned_cols=38 Identities=39% Similarity=0.912 Sum_probs=29.1
Q ss_pred ccccccccccCceeEEeCCCCcccHhhHHHHHhcC----CCCccc
Q 048433 217 CTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQR----GTCPVC 257 (279)
Q Consensus 217 C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~----~~CP~C 257 (279)
|+||++.|. +.+.|+|||.||..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~~---~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK---DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S---SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC---CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 44689999999999999999753 359987
No 16
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.1e-09 Score=109.02 Aligned_cols=54 Identities=33% Similarity=0.827 Sum_probs=45.8
Q ss_pred CcccccccccccccCce--eEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCC
Q 048433 213 DELTCTICLEQVKCGEL--VRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~--v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~ 266 (279)
.+..|+||+|.+..+.. ..+++|+|.||..|++.|++++.+||+||..+-....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL 345 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence 36789999999986543 6789999999999999999999999999995555443
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.82 E-value=2e-09 Score=94.16 Aligned_cols=50 Identities=38% Similarity=0.846 Sum_probs=37.1
Q ss_pred CcccccccccccccCc-----eeEEe-CCCCcccHhhHHHHHhcC------CCCcccccccC
Q 048433 213 DELTCTICLEQVKCGE-----LVRSL-PCLHQFHANCIDPWLRQR------GTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~~~-----~v~~L-pC~H~Fh~~CI~~WL~~~------~~CP~CR~~i~ 262 (279)
++.+|+||+|..-+.. ....| +|+|.||..||.+|.+.+ .+||+||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3568999999864321 12344 599999999999999753 35999998765
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.82 E-value=3e-09 Score=80.01 Aligned_cols=50 Identities=32% Similarity=0.744 Sum_probs=38.1
Q ss_pred ccccccccccccc--------Cc--eeEEeCCCCcccHhhHHHHHhc---CCCCcccccccCC
Q 048433 214 ELTCTICLEQVKC--------GE--LVRSLPCLHQFHANCIDPWLRQ---RGTCPVCKFRMGS 263 (279)
Q Consensus 214 ~~~C~ICle~~~~--------~~--~v~~LpC~H~Fh~~CI~~WL~~---~~~CP~CR~~i~~ 263 (279)
++.|.||...|+. |+ .+..-.|+|.||.+||.+|+.. ++.||+||+...-
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 5679999988872 22 2223349999999999999985 5679999998653
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.78 E-value=5.2e-09 Score=68.17 Aligned_cols=39 Identities=44% Similarity=1.042 Sum_probs=33.3
Q ss_pred ccccccccccCceeEEeCCCCcccHhhHHHHHh--cCCCCccc
Q 048433 217 CTICLEQVKCGELVRSLPCLHQFHANCIDPWLR--QRGTCPVC 257 (279)
Q Consensus 217 C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~--~~~~CP~C 257 (279)
|+||++.+..+ ...++|||.||..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998843 35789999999999999999 45569998
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.77 E-value=6.2e-09 Score=73.83 Aligned_cols=46 Identities=30% Similarity=0.501 Sum_probs=40.6
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
..|+||.+.+..+ ..++|||.|+..||.+|++.+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4799999998853 568999999999999999998999999988754
No 21
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.76 E-value=5.6e-09 Score=69.41 Aligned_cols=44 Identities=27% Similarity=0.659 Sum_probs=37.8
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCccccc
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKF 259 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~ 259 (279)
.|+||++.|........++|||.||..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 39999999955556778899999999999999866778999984
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.69 E-value=1.5e-08 Score=63.74 Aligned_cols=38 Identities=47% Similarity=1.163 Sum_probs=32.5
Q ss_pred ccccccccccCceeEEeCCCCcccHhhHHHHHh-cCCCCccc
Q 048433 217 CTICLEQVKCGELVRSLPCLHQFHANCIDPWLR-QRGTCPVC 257 (279)
Q Consensus 217 C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~-~~~~CP~C 257 (279)
|+||++.. .....++|||.||..|++.|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78998883 3667889999999999999998 56679987
No 23
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=1.3e-08 Score=97.14 Aligned_cols=52 Identities=25% Similarity=0.581 Sum_probs=44.4
Q ss_pred CCCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 210 SSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 210 ~~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
..+....|+||++.|..+ ..++|||.||..||..|+.....||+||..+...
T Consensus 22 ~Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 345678999999999744 4689999999999999999888999999988754
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.3e-08 Score=86.60 Aligned_cols=51 Identities=25% Similarity=0.702 Sum_probs=42.7
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHH-HHhcCCC-CcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDP-WLRQRGT-CPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~-WL~~~~~-CP~CR~~i~~~~ 265 (279)
+.+..|.||++... ....++|||.||..||.. |-+++.. ||+||+.+..+.
T Consensus 213 ~~d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPE---VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccC---CcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 56789999988766 456789999999999999 9877665 999999887654
No 25
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.6e-08 Score=87.06 Aligned_cols=54 Identities=30% Similarity=0.665 Sum_probs=43.9
Q ss_pred CCcccccccccccccCc-------eeEEeCCCCcccHhhHHHHHh--cCCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGE-------LVRSLPCLHQFHANCIDPWLR--QRGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~-------~v~~LpC~H~Fh~~CI~~WL~--~~~~CP~CR~~i~~~~ 265 (279)
.++..|+||-..+...+ +.-.|.|+|.||..||+.|.- ++.+||.||.++..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 45668999988876554 566789999999999999974 6889999998876543
No 26
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.42 E-value=1.8e-07 Score=61.89 Aligned_cols=34 Identities=29% Similarity=0.668 Sum_probs=21.5
Q ss_pred cccccccccc-CceeEEeCCCCcccHhhHHHHHhcC
Q 048433 217 CTICLEQVKC-GELVRSLPCLHQFHANCIDPWLRQR 251 (279)
Q Consensus 217 C~ICle~~~~-~~~v~~LpC~H~Fh~~CI~~WL~~~ 251 (279)
|+||.+ +.. ......|+|||.||.+|+.+|++++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 654 3456789999999999999999854
No 27
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.6e-07 Score=72.61 Aligned_cols=50 Identities=30% Similarity=0.666 Sum_probs=37.0
Q ss_pred CCCcccccccccccc-------------cCceeEEeC-CCCcccHhhHHHHHhcCCCCcccccc
Q 048433 211 SEDELTCTICLEQVK-------------CGELVRSLP-CLHQFHANCIDPWLRQRGTCPVCKFR 260 (279)
Q Consensus 211 ~~e~~~C~ICle~~~-------------~~~~v~~Lp-C~H~Fh~~CI~~WL~~~~~CP~CR~~ 260 (279)
+.....|+||...+- .++-..... |.|.||..||.+||++++.||+|.+.
T Consensus 43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 344568999965541 122333344 99999999999999999999999654
No 28
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.38 E-value=2.3e-07 Score=68.47 Aligned_cols=28 Identities=39% Similarity=0.958 Sum_probs=26.3
Q ss_pred CCCcccHhhHHHHHhcCCCCcccccccC
Q 048433 235 CLHQFHANCIDPWLRQRGTCPVCKFRMG 262 (279)
Q Consensus 235 C~H~Fh~~CI~~WL~~~~~CP~CR~~i~ 262 (279)
|.|.||.+||.+||..++.||++|++..
T Consensus 54 CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 54 CNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 9999999999999999999999998754
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2e-07 Score=90.19 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=39.1
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhc-----CCCCcccccccCCCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-----RGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-----~~~CP~CR~~i~~~~~ 266 (279)
+..|||||+....+ ..+.|||+||..||.+.+.. ...||+||..|..+..
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 67899999886633 34459999999999998754 3469999998877543
No 30
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.31 E-value=1.2e-07 Score=87.40 Aligned_cols=53 Identities=30% Similarity=0.627 Sum_probs=45.2
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~ 266 (279)
.++-..|.||.+.|..+ ...||+|.||.-||+..|..+..||.|+..+.+...
T Consensus 20 lD~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred hHHHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 34557899999999944 478899999999999999999999999998876543
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.31 E-value=4e-07 Score=67.05 Aligned_cols=49 Identities=31% Similarity=0.533 Sum_probs=38.2
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc-CCCCcccccccCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGSG 264 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~~ 264 (279)
++..|+||.+.+. +.+.+||||.|...||.+|+++ ..+||+|+.++...
T Consensus 3 ~~f~CpIt~~lM~---dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMR---DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-S---SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhh---CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 4578999999998 4457899999999999999998 88999999888754
No 32
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4e-07 Score=84.74 Aligned_cols=58 Identities=26% Similarity=0.555 Sum_probs=46.9
Q ss_pred CCcccccccccccccCceeEEeCCCCc-ccHhhHHHHHhcCCCCcccccccCCCCCCCCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQ-FHANCIDPWLRQRGTCPVCKFRMGSGWQENRESE 272 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~~~~~~ 272 (279)
+...+|.||+.+.. ++..|||.|. .|..|.+..--+++.||+||+++..-...-...+
T Consensus 288 ~~gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~~~~ 346 (349)
T KOG4265|consen 288 ESGKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYVNKE 346 (349)
T ss_pred cCCCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheeccccc
Confidence 44678999988766 6789999996 8999999887789999999999887655444433
No 33
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.3e-07 Score=69.18 Aligned_cols=49 Identities=39% Similarity=0.857 Sum_probs=36.1
Q ss_pred ccccccccccccc--------Cce-eEEeC-CCCcccHhhHHHHHhc---CCCCcccccccC
Q 048433 214 ELTCTICLEQVKC--------GEL-VRSLP-CLHQFHANCIDPWLRQ---RGTCPVCKFRMG 262 (279)
Q Consensus 214 ~~~C~ICle~~~~--------~~~-v~~Lp-C~H~Fh~~CI~~WL~~---~~~CP~CR~~i~ 262 (279)
+++|.||...|.. +++ ..++. |.|.||..||.+|+.. +..||+||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3489999888862 222 22333 9999999999999964 567999998754
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.24 E-value=6.7e-07 Score=82.53 Aligned_cols=52 Identities=21% Similarity=0.500 Sum_probs=37.9
Q ss_pred cccccccccc-cccCce-eEEeCCCCcccHhhHHHHHh-cCCCCcccccccCCCC
Q 048433 214 ELTCTICLEQ-VKCGEL-VRSLPCLHQFHANCIDPWLR-QRGTCPVCKFRMGSGW 265 (279)
Q Consensus 214 ~~~C~ICle~-~~~~~~-v~~LpC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~~~~ 265 (279)
+..||||... +..++. +..-+|||.||..|+...+. ....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4579999995 333321 22227999999999999664 4667999999887765
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.2e-07 Score=81.15 Aligned_cols=46 Identities=39% Similarity=0.779 Sum_probs=39.7
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCccccc
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKF 259 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~ 259 (279)
..++..|+||++.|..+ ..++|||.||..|+..++...-.||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 35678999999999976 68999999999999999885556999993
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.22 E-value=5.4e-07 Score=81.62 Aligned_cols=49 Identities=29% Similarity=0.550 Sum_probs=41.6
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
.-..|-||-+.+..+ ...+|||.||.-||+..|..+..||+||.+....
T Consensus 24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 345799999998844 4678999999999999999999999999876543
No 37
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.7e-07 Score=86.81 Aligned_cols=62 Identities=29% Similarity=0.597 Sum_probs=49.3
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc-CCCCcccccccCCCCCCCCCCCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGSGWQENRESESDS 275 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~~~~~~~~~~~~~ 275 (279)
..+..|+|||+.++. .+.+-.|+|.||.+||.+-++. ++.||.||+.+.++-....+..+|+
T Consensus 41 ~~~v~c~icl~llk~--tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fda 103 (381)
T KOG0311|consen 41 DIQVICPICLSLLKK--TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDA 103 (381)
T ss_pred hhhhccHHHHHHHHh--hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHH
Confidence 345789999999882 3333449999999999998875 7789999999999988777766553
No 38
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.17 E-value=1.5e-06 Score=59.12 Aligned_cols=42 Identities=29% Similarity=0.764 Sum_probs=32.4
Q ss_pred cccccccccccCceeEEeCCC-----CcccHhhHHHHHhc--CCCCcccc
Q 048433 216 TCTICLEQVKCGELVRSLPCL-----HQFHANCIDPWLRQ--RGTCPVCK 258 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~-----H~Fh~~CI~~WL~~--~~~CP~CR 258 (279)
.|-||++ ...++.....||. |.+|..|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 3334455678974 88999999999965 44799995
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.15 E-value=1.1e-06 Score=83.86 Aligned_cols=50 Identities=30% Similarity=0.857 Sum_probs=40.5
Q ss_pred CCcccccccccccccCc-eeEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 212 EDELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
.+-.+|+||||.+.... .+....|.|.||..|+.+| ...+||+||.-..+
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~p 223 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQSP 223 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcCc
Confidence 45568999999998664 3445669999999999999 56789999987664
No 40
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.9e-07 Score=62.56 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=36.1
Q ss_pred ccccccccccccCceeEEeCCCCc-ccHhhHHHHHh-cCCCCcccccccCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQ-FHANCIDPWLR-QRGTCPVCKFRMGS 263 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~-Fh~~CI~~WL~-~~~~CP~CR~~i~~ 263 (279)
.+|.||+|.-. +.+...|||. .|.+|..+.++ .+..||+||++|.+
T Consensus 8 dECTICye~pv---dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPV---DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcc---hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 47999977543 3345669997 79999887666 68899999998864
No 41
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3e-06 Score=77.24 Aligned_cols=51 Identities=31% Similarity=0.701 Sum_probs=41.5
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhc-CCCCcccccccCCCCCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGSGWQEN 268 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~~~~~~ 268 (279)
.+|+||+.....+ +.|+|+|.||..||+.-.+. +.+|++||++|.+..-.+
T Consensus 8 ~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~ 59 (324)
T KOG0824|consen 8 KECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFE 59 (324)
T ss_pred CcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcc
Confidence 3699998876643 67999999999999998776 566999999998765443
No 42
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.94 E-value=2.5e-06 Score=87.42 Aligned_cols=51 Identities=25% Similarity=0.766 Sum_probs=36.7
Q ss_pred CCcccccccccccccCc----eeEEeCCCCcccHhhHHHHHhc--CCCCcccccccC
Q 048433 212 EDELTCTICLEQVKCGE----LVRSLPCLHQFHANCIDPWLRQ--RGTCPVCKFRMG 262 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~----~v~~LpC~H~Fh~~CI~~WL~~--~~~CP~CR~~i~ 262 (279)
..-++|+||+..+..-+ ..+.-.|.|.||..|+.+|++. +++||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34568999987665111 1112239999999999999986 567999997765
No 43
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.92 E-value=2.4e-06 Score=62.46 Aligned_cols=49 Identities=33% Similarity=0.757 Sum_probs=23.4
Q ss_pred ccccccccccc-cCcee-EEe---CCCCcccHhhHHHHHhc----C-------CCCcccccccCC
Q 048433 215 LTCTICLEQVK-CGELV-RSL---PCLHQFHANCIDPWLRQ----R-------GTCPVCKFRMGS 263 (279)
Q Consensus 215 ~~C~ICle~~~-~~~~v-~~L---pC~H~Fh~~CI~~WL~~----~-------~~CP~CR~~i~~ 263 (279)
..|.||+.... .++.. ..- .|++.||..|+.+|++. + +.||.|+.+|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 47999999865 32221 111 49999999999999963 1 249999998764
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.88 E-value=5e-06 Score=83.82 Aligned_cols=52 Identities=27% Similarity=0.481 Sum_probs=44.1
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
.....|++|+..+..+......+|+|.||.+||..|-+...+||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4456899999998866555567799999999999999999999999987654
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.1e-05 Score=75.77 Aligned_cols=52 Identities=35% Similarity=0.782 Sum_probs=38.3
Q ss_pred CCcccccccccccccCc----eeEEeC-CCCcccHhhHHHHH--hc-----CCCCcccccccCC
Q 048433 212 EDELTCTICLEQVKCGE----LVRSLP-CLHQFHANCIDPWL--RQ-----RGTCPVCKFRMGS 263 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~----~v~~Lp-C~H~Fh~~CI~~WL--~~-----~~~CP~CR~~i~~ 263 (279)
..+.+|.||++...... ....|| |.|.||..||.+|- ++ .+.||.||....-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 34678999999876432 012345 99999999999998 44 4679999976543
No 46
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=9.4e-06 Score=76.26 Aligned_cols=52 Identities=23% Similarity=0.754 Sum_probs=38.0
Q ss_pred cccccccccccCceeEEeC-CCCcccHhhHHHHHhc---CCCCcccccccCCCCCC
Q 048433 216 TCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQ---RGTCPVCKFRMGSGWQE 267 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~~---~~~CP~CR~~i~~~~~~ 267 (279)
.|.||.+-+....++..+. |||.||..|+.+|+.. ...||+||-.++..-..
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 6999955544444555555 9999999999999985 35799999665554433
No 47
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2.3e-05 Score=74.10 Aligned_cols=49 Identities=35% Similarity=0.762 Sum_probs=38.1
Q ss_pred CcccccccccccccCcee--EEeCCCCcccHhhHHHHHhc--CCCCccccccc
Q 048433 213 DELTCTICLEQVKCGELV--RSLPCLHQFHANCIDPWLRQ--RGTCPVCKFRM 261 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v--~~LpC~H~Fh~~CI~~WL~~--~~~CP~CR~~i 261 (279)
...+|+||++.+.-..+. ..+.|||.|..+||++||.+ ...||.|..+.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 346899999998765543 34669999999999999963 34599997653
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=1.4e-05 Score=80.79 Aligned_cols=49 Identities=24% Similarity=0.574 Sum_probs=39.8
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHh-cCCCCcccccccCCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR-QRGTCPVCKFRMGSGW 265 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~~~~ 265 (279)
-.+|++|-..++ +++...|+|.||..|+.+-+. ++..||.|...++...
T Consensus 643 ~LkCs~Cn~R~K---d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 643 LLKCSVCNTRWK---DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred ceeCCCccCchh---hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 468999976665 455666999999999999997 4778999999887653
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.60 E-value=1.2e-05 Score=57.24 Aligned_cols=47 Identities=32% Similarity=0.636 Sum_probs=23.2
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
+-..|++|.+.++.+ +....|.|.||..||..-+. ..||+|+.+.-.
T Consensus 6 ~lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~ 52 (65)
T PF14835_consen 6 ELLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI 52 (65)
T ss_dssp HTTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred HhcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence 345799999998844 34456999999999977433 459999877643
No 50
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00014 Score=67.88 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=44.1
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~ 266 (279)
..++..|+||.. .+......||+|.-|+.||.+.+.+.+.|=.||..+.+...
T Consensus 419 ~sEd~lCpICyA---~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~l 471 (489)
T KOG4692|consen 419 DSEDNLCPICYA---GPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVIL 471 (489)
T ss_pred CcccccCcceec---ccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehhc
Confidence 356788999954 44455678999999999999999999999999999886443
No 51
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=9.7e-05 Score=70.86 Aligned_cols=49 Identities=29% Similarity=0.668 Sum_probs=42.2
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
..+..|.||+..+..+ +++||||.||..||.+-+.+...||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4567899999988844 467999999999999988888889999998876
No 52
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.33 E-value=7.5e-05 Score=68.18 Aligned_cols=52 Identities=27% Similarity=0.574 Sum_probs=43.4
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHh-----------------------cCCCCcccccccCCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR-----------------------QRGTCPVCKFRMGSGW 265 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~-----------------------~~~~CP~CR~~i~~~~ 265 (279)
...|.|||--|..++...+.+|-|.||..|+.+.|. .+..||+||.+|+...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 457999999999988888999999999999988762 0224999999998654
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.25 E-value=0.00011 Score=69.41 Aligned_cols=47 Identities=30% Similarity=0.728 Sum_probs=38.3
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhc--CCCCcccccccCCCC
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ--RGTCPVCKFRMGSGW 265 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~--~~~CP~CR~~i~~~~ 265 (279)
-|.||-|.- .++..=||||..|..|+..|-.. .++||.||..|+...
T Consensus 371 LCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 599997653 36777889999999999999743 578999999987654
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.17 E-value=0.00035 Score=49.02 Aligned_cols=41 Identities=32% Similarity=0.686 Sum_probs=28.4
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhc--CCCCcc
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ--RGTCPV 256 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~--~~~CP~ 256 (279)
...|||.+..|+ +.++...|||.|-.+.|.+|+++ ...||+
T Consensus 11 ~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 468999999998 45666789999999999999954 445998
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.09 E-value=0.00029 Score=67.75 Aligned_cols=54 Identities=26% Similarity=0.637 Sum_probs=43.9
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~ 266 (279)
.+++..|+||...+..+. ....|||.||..|+..|+..+..||.|+..+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p~--~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPV--QTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCC--CCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 356689999999988553 225799999999999999999999999887655443
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.05 E-value=0.00026 Score=66.83 Aligned_cols=62 Identities=35% Similarity=0.749 Sum_probs=44.7
Q ss_pred cccccccccccccC-ceeEEeCCCCcccHhhHHHHHhcCC--CCcccccccC----CCCCCCCCCCCCC
Q 048433 214 ELTCTICLEQVKCG-ELVRSLPCLHQFHANCIDPWLRQRG--TCPVCKFRMG----SGWQENRESESDS 275 (279)
Q Consensus 214 ~~~C~ICle~~~~~-~~v~~LpC~H~Fh~~CI~~WL~~~~--~CP~CR~~i~----~~~~~~~~~~~~~ 275 (279)
+..|..|-+.+... +.+-.|||.|+||..|+...|.++. +||.||.-.. +.+......++++
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Veses 433 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESES 433 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCcccccc
Confidence 46799998887543 3566799999999999999997754 6999995433 4444444444444
No 57
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.04 E-value=0.00036 Score=74.51 Aligned_cols=53 Identities=28% Similarity=0.675 Sum_probs=40.9
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCC----------CCcccccccCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG----------TCPVCKFRMGS 263 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~----------~CP~CR~~i~~ 263 (279)
.+.+..|.||+.+--.......|.|+|+||.+|.++.|.++- .||+|+.+|..
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 345668999987755555677899999999999998876532 49999988753
No 58
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.01 E-value=0.00016 Score=66.88 Aligned_cols=52 Identities=25% Similarity=0.602 Sum_probs=42.4
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
....+|.+|-..+.... .+.-|-|.||..||.+.+...++||.|...+....
T Consensus 13 n~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceeecch--hHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 34568999999888443 23449999999999999999999999988877653
No 59
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.001 Score=60.30 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=36.9
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc--CCCCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ--RGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~--~~~CP~CR~~i~~ 263 (279)
.+.+|++|-+.-. ......+|||.||..||..-..- ..+||.|-..+.+
T Consensus 238 ~~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 238 SDTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred CCceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 4568999977644 23455679999999999987653 4689999776653
No 60
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.84 E-value=0.00059 Score=46.06 Aligned_cols=44 Identities=27% Similarity=0.620 Sum_probs=22.4
Q ss_pred ccccccccccCceeEEeC--CCCcccHhhHHHHHh-cCCCCccccccc
Q 048433 217 CTICLEQVKCGELVRSLP--CLHQFHANCIDPWLR-QRGTCPVCKFRM 261 (279)
Q Consensus 217 C~ICle~~~~~~~v~~Lp--C~H~Fh~~CI~~WL~-~~~~CP~CR~~i 261 (279)
|++|.+++...+ ...+| ||++.|..|...-++ ..+.||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999985432 23455 899999999888886 478899999875
No 61
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.0022 Score=57.28 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=46.0
Q ss_pred CcccccccccccccCceeEEe-CCCCcccHhhHHHHHhcCCCCcccccccCCCCC
Q 048433 213 DELTCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~ 266 (279)
....|+||.+.+........| ||||+|+.+|..+.++....||+|-.++.++.-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 456899999999876655555 499999999999999999999999998887654
No 62
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.62 E-value=0.00094 Score=57.85 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=39.2
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
...|.||-.+|..+ ++..|||.||..|..+-++....|-+|-.....
T Consensus 196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 35899999999955 367799999999999988889999999665443
No 63
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.57 E-value=0.0021 Score=59.98 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=39.3
Q ss_pred CCCCCcccccccccccccCceeEEeCCCCcccHhhHHHH--HhcCCCCcccccc
Q 048433 209 KSSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPW--LRQRGTCPVCKFR 260 (279)
Q Consensus 209 ~~~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~W--L~~~~~CP~CR~~ 260 (279)
+.+++...|-||-+.+. -..++||+|..|.-|..+. |..++.||+||..
T Consensus 56 dtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 56 DTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 34456678999988766 5678999999999998764 4578899999975
No 64
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0028 Score=59.46 Aligned_cols=44 Identities=30% Similarity=0.637 Sum_probs=31.3
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~ 262 (279)
-...|.||+++.. ...-+||||.-| |..-- +....||+||+.|.
T Consensus 304 ~p~lcVVcl~e~~---~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPK---SAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCcc---ceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 3457999998876 466899999865 54332 22444999998774
No 65
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.00087 Score=61.18 Aligned_cols=43 Identities=23% Similarity=0.543 Sum_probs=33.8
Q ss_pred cccccccccccccCceeEEeCCCCc-ccHhhHHHHHhcCCCCcccccccCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQ-FHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
+.-|.||++.- .+...|+|||. -|.+|.++. +.||+||+.|..
T Consensus 300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCC---cceEEeecCcEEeehhhcccc----ccCchHHHHHHH
Confidence 56799997654 46778999996 599998664 489999987643
No 66
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0034 Score=55.45 Aligned_cols=50 Identities=24% Similarity=0.605 Sum_probs=39.7
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc--------CCCCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ--------RGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~--------~~~CP~CR~~i~~ 263 (279)
....|..|-..+.+++.+ +|-|-|.||.+|+..|-.+ .-.||.|..+|-.
T Consensus 49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 345799999999988654 6779999999999999864 1249999887644
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.22 E-value=0.002 Score=49.96 Aligned_cols=32 Identities=25% Similarity=0.687 Sum_probs=26.8
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHH
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCID 245 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~ 245 (279)
++..|++|-..+.. ......||||.||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 34579999999886 467789999999999975
No 68
>PHA02862 5L protein; Provisional
Probab=95.96 E-value=0.0053 Score=50.70 Aligned_cols=44 Identities=23% Similarity=0.573 Sum_probs=32.8
Q ss_pred ccccccccccccCceeEEeCCCC-----cccHhhHHHHHhc--CCCCcccccccC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLH-----QFHANCIDPWLRQ--RGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H-----~Fh~~CI~~WL~~--~~~CP~CR~~i~ 262 (279)
..|=||++.-++. .-||.. .-|.+|+.+|+.. +..|++|+.++.
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 3799999875432 356643 4799999999974 567999998754
No 69
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0028 Score=57.98 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=40.1
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
..|-||-..|..+ ++..|+|.||..|...-++....|.+|-+.+...+
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 4699999999954 46779999999999998888899999987765443
No 70
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0026 Score=53.43 Aligned_cols=29 Identities=41% Similarity=0.980 Sum_probs=26.3
Q ss_pred CcccccccccccccCceeEEeCCCCcccH
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHA 241 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~ 241 (279)
+.-+|.||||++..++.+.+|||..+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 34579999999999999999999999996
No 71
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.85 E-value=0.0043 Score=60.88 Aligned_cols=56 Identities=25% Similarity=0.595 Sum_probs=41.3
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc-----CCCCcccccccCCCCCCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-----RGTCPVCKFRMGSGWQENRE 270 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-----~~~CP~CR~~i~~~~~~~~~ 270 (279)
.++..|.+|.+.-+ +.....|.|.||..||..+... +-+||+|-..+.-.-.++.-
T Consensus 534 k~~~~C~lc~d~ae---d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~al 594 (791)
T KOG1002|consen 534 KGEVECGLCHDPAE---DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPAL 594 (791)
T ss_pred cCceeecccCChhh---hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhh
Confidence 34568999988755 4446679999999999988752 45799998877655444433
No 72
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.80 E-value=0.0077 Score=40.48 Aligned_cols=40 Identities=35% Similarity=0.919 Sum_probs=26.3
Q ss_pred ccccccccccCceeEEeCCCC-----cccHhhHHHHHhc--CCCCccc
Q 048433 217 CTICLEQVKCGELVRSLPCLH-----QFHANCIDPWLRQ--RGTCPVC 257 (279)
Q Consensus 217 C~ICle~~~~~~~v~~LpC~H-----~Fh~~CI~~WL~~--~~~CP~C 257 (279)
|-||++.-.+.. ....||+- ..|.+|+.+|+.. +..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679998876554 44577643 4799999999974 5569987
No 73
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0048 Score=58.83 Aligned_cols=45 Identities=29% Similarity=0.649 Sum_probs=36.2
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhc--------CCCCccccc
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ--------RGTCPVCKF 259 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~--------~~~CP~CR~ 259 (279)
..|.||++..........+||+|.||..|.+..+.. .-.||-|+.
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 579999998876678888999999999999999853 123877654
No 74
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.61 E-value=0.013 Score=49.18 Aligned_cols=46 Identities=20% Similarity=0.612 Sum_probs=33.3
Q ss_pred CcccccccccccccCceeEEeCCCC-----cccHhhHHHHHhc--CCCCcccccccC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLH-----QFHANCIDPWLRQ--RGTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H-----~Fh~~CI~~WL~~--~~~CP~CR~~i~ 262 (279)
.+..|-||.+.-. +. .-||.. .-|.+|+.+|+.. ...|++|++++.
T Consensus 7 ~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4558999988743 22 346544 3599999999975 456999988764
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.50 E-value=0.0088 Score=55.81 Aligned_cols=54 Identities=22% Similarity=0.519 Sum_probs=38.1
Q ss_pred CcccccccccccccCc-eeEEeCCCCcccHhhHHHHHhc-CCCCcccccccCCCCC
Q 048433 213 DELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 213 e~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~~~~ 266 (279)
++..|+.|+|.+.-.+ ...-.|||-..|.-|....-.. ++.||-||+...+.+.
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 3445999999887544 2233568988788886554443 7789999998877654
No 76
>PHA03096 p28-like protein; Provisional
Probab=95.48 E-value=0.0068 Score=55.89 Aligned_cols=36 Identities=33% Similarity=0.701 Sum_probs=27.7
Q ss_pred ccccccccccccCc----eeEEeC-CCCcccHhhHHHHHhc
Q 048433 215 LTCTICLEQVKCGE----LVRSLP-CLHQFHANCIDPWLRQ 250 (279)
Q Consensus 215 ~~C~ICle~~~~~~----~v~~Lp-C~H~Fh~~CI~~WL~~ 250 (279)
..|.||++...... .-..|+ |.|.||..||..|-..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 47999999876431 223566 9999999999999853
No 77
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.45 E-value=0.0086 Score=61.65 Aligned_cols=46 Identities=41% Similarity=0.912 Sum_probs=34.7
Q ss_pred CcccccccccccccCceeEE-eCCCCcccHhhHHHHHhc-------CCCCcccc
Q 048433 213 DELTCTICLEQVKCGELVRS-LPCLHQFHANCIDPWLRQ-------RGTCPVCK 258 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~-LpC~H~Fh~~CI~~WL~~-------~~~CP~CR 258 (279)
+..+|.||.+.+.....+=. -.|-|+||..||..|-++ .-.||.|.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 34689999999886543322 238899999999999874 12499997
No 78
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.42 E-value=0.01 Score=48.53 Aligned_cols=38 Identities=26% Similarity=0.609 Sum_probs=29.6
Q ss_pred cccccccccccccCceeEEeCCC------CcccHhhHHHHHhcC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCL------HQFHANCIDPWLRQR 251 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~------H~Fh~~CI~~WL~~~ 251 (279)
..+|.||++.+...+.++.++|| |.||.+|+.+|-+.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 45799999999874566667775 679999999995433
No 79
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.08 E-value=0.0082 Score=53.57 Aligned_cols=47 Identities=21% Similarity=0.475 Sum_probs=33.8
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
-|-.|..--. ++....+.|+|+||..|...- ....||+||..+....
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQ 51 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeeeee
Confidence 4777765444 566777789999999997653 1228999999865443
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.02 Score=53.19 Aligned_cols=47 Identities=26% Similarity=0.516 Sum_probs=36.4
Q ss_pred CCcccccccccccccCceeEEeC-CCCcccHhhHHHHHhcCCCCccccccc
Q 048433 212 EDELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQRGTCPVCKFRM 261 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~~~~~CP~CR~~i 261 (279)
.+...|+||+.....+. .+. -|-+||..||...+++.+.||+-..++
T Consensus 298 ~~~~~CpvClk~r~Npt---vl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPT---VLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCc---eEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 34568999988766432 333 699999999999999999999865543
No 81
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.015 Score=53.53 Aligned_cols=47 Identities=32% Similarity=0.658 Sum_probs=38.2
Q ss_pred ccccccccccccCc---eeEEeCCCCcccHhhHHHHHhc-CCCCccccccc
Q 048433 215 LTCTICLEQVKCGE---LVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRM 261 (279)
Q Consensus 215 ~~C~ICle~~~~~~---~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i 261 (279)
..|-||=++|...+ ..+.|.|||.||..|+.+.+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 36999999998663 3456779999999999888776 44699999984
No 82
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.67 E-value=0.032 Score=46.84 Aligned_cols=55 Identities=27% Similarity=0.630 Sum_probs=34.7
Q ss_pred CcccccccccccccCceeE-------EeC--CCCc-ccHhhHHHHHhc-------------------------------C
Q 048433 213 DELTCTICLEQVKCGELVR-------SLP--CLHQ-FHANCIDPWLRQ-------------------------------R 251 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~-------~Lp--C~H~-Fh~~CI~~WL~~-------------------------------~ 251 (279)
++.+|+||||.--....+. .-| |+-. -|..|+++..+. +
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 3568999998754322111 012 5544 488999998741 1
Q ss_pred CCCcccccccCCCCCC
Q 048433 252 GTCPVCKFRMGSGWQE 267 (279)
Q Consensus 252 ~~CP~CR~~i~~~~~~ 267 (279)
-.||+||..|..+...
T Consensus 81 L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVV 96 (162)
T ss_pred ccCccccCceeceEEc
Confidence 1399999999876543
No 83
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.58 E-value=0.017 Score=53.05 Aligned_cols=42 Identities=31% Similarity=0.683 Sum_probs=33.3
Q ss_pred ccccccccccccCceeEEeC-CCCcccHhhHHHHHh-cCCCCccccc
Q 048433 215 LTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLR-QRGTCPVCKF 259 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~-~~~~CP~CR~ 259 (279)
+.|+.|...+..+ + ..| |+|.||.+||..-|. ....||.|..
T Consensus 275 LkCplc~~Llrnp--~-kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP--M-KTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc--c-cCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899998877743 2 345 899999999998776 4677999955
No 84
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.48 E-value=0.024 Score=52.67 Aligned_cols=46 Identities=24% Similarity=0.679 Sum_probs=36.6
Q ss_pred CCCcccccccccccccCceeEEeCC--CCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPC--LHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC--~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
..+-.+||||.+.+..+. ..| ||.-|..|-. +..+.||.||.+++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi----~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPI----FQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcccc----eecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 345678999999988653 556 8999999965 357889999999984
No 85
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.027 Score=48.17 Aligned_cols=53 Identities=28% Similarity=0.666 Sum_probs=36.1
Q ss_pred CcccccccccccccCc----eeEEeCCCCcccHhhHHHHHhc-----C------CCCcccccccCCCC
Q 048433 213 DELTCTICLEQVKCGE----LVRSLPCLHQFHANCIDPWLRQ-----R------GTCPVCKFRMGSGW 265 (279)
Q Consensus 213 e~~~C~ICle~~~~~~----~v~~LpC~H~Fh~~CI~~WL~~-----~------~~CP~CR~~i~~~~ 265 (279)
+...|.||+..--.|. ..-...||..||.-|+..||+. + +.||.|..++.-+-
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 3446888876433332 1123559999999999999973 1 24999998876554
No 86
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.25 E-value=0.061 Score=48.94 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=41.3
Q ss_pred CCcccccccccccccCc-eeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCC
Q 048433 212 EDELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~ 266 (279)
.....|||....|.... -+...||||+|...++...- ....||+|-.++.....
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCE
Confidence 45678999999986443 34455899999999999983 45679999888875543
No 87
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.13 E-value=0.028 Score=37.02 Aligned_cols=41 Identities=32% Similarity=0.834 Sum_probs=23.5
Q ss_pred ccccccccccCceeEEeCCCCcccHhhHHHHHhcCC--CCccc
Q 048433 217 CTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG--TCPVC 257 (279)
Q Consensus 217 C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~--~CP~C 257 (279)
|.+|-+....|..-..-.|+=.+|..|+..+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888777665332334888999999999998755 79987
No 88
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.06 E-value=0.054 Score=55.62 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=41.8
Q ss_pred CcccccccccccccCce-eEEeC---CCCcccHhhHHHHHhc------CCCCcccccccCCCCCCCCC
Q 048433 213 DELTCTICLEQVKCGEL-VRSLP---CLHQFHANCIDPWLRQ------RGTCPVCKFRMGSGWQENRE 270 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~-v~~Lp---C~H~Fh~~CI~~WL~~------~~~CP~CR~~i~~~~~~~~~ 270 (279)
+..+|.||..++..+++ ...+| |+|.||..||..|..+ +-.|+.|...|..+....+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqT 162 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQT 162 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhccc
Confidence 34578888877775332 23445 9999999999999854 34589999988877665544
No 89
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.0041 Score=58.88 Aligned_cols=50 Identities=22% Similarity=0.577 Sum_probs=42.4
Q ss_pred ccccccccccccC-ceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 215 LTCTICLEQVKCG-ELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 215 ~~C~ICle~~~~~-~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
..|+||.+.+++. +.+..+-|||.+|..|+.+||.....||.|+..++..
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 4799999998865 4555667999999999999999988999999987754
No 90
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=0.029 Score=57.95 Aligned_cols=40 Identities=23% Similarity=0.684 Sum_probs=32.3
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCccccc
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKF 259 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~ 259 (279)
..|..|--.++-+ .+..-|||.||.+|.. .....||-|+.
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLP 880 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccch
Confidence 4799997777743 4567799999999998 45667999987
No 91
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.82 E-value=0.034 Score=38.56 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=32.8
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
...|..|...- ..-..+||||..|..|..-+ +-+.||.|-+++...
T Consensus 7 ~~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVG---TKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccc---cccccccccceeeccccChh--hccCCCCCCCcccCC
Confidence 34577774432 34467999999999996543 567799998887654
No 92
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.53 E-value=0.03 Score=57.55 Aligned_cols=50 Identities=22% Similarity=0.500 Sum_probs=38.6
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhc--CCCCcccccccCCCCCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ--RGTCPVCKFRMGSGWQEN 268 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~--~~~CP~CR~~i~~~~~~~ 268 (279)
..|.||++ .+.....+|+|.||.+|+..-+.. ...||.||..+..+....
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 68999998 345667789999999999998865 335999998776554433
No 93
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.01 E-value=0.043 Score=50.31 Aligned_cols=44 Identities=32% Similarity=0.684 Sum_probs=36.4
Q ss_pred cccccccccccC-ceeEEeCCCCcccHhhHHHHHhcCCCCccccc
Q 048433 216 TCTICLEQVKCG-ELVRSLPCLHQFHANCIDPWLRQRGTCPVCKF 259 (279)
Q Consensus 216 ~C~ICle~~~~~-~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~ 259 (279)
.|+||.+.+... ..+..++|||.-|..|........-+||+|..
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 499999976544 35667899999999999888877788999987
No 94
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.93 E-value=0.045 Score=58.90 Aligned_cols=43 Identities=30% Similarity=0.759 Sum_probs=36.4
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCccccc
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKF 259 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~ 259 (279)
..|.||++.+.... ....|||.+|..|...|+..+..||+|+.
T Consensus 1154 ~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 47999999887322 34569999999999999999999999984
No 95
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.89 E-value=0.14 Score=49.56 Aligned_cols=36 Identities=33% Similarity=0.614 Sum_probs=30.7
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ 250 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~ 250 (279)
+++..|+||..-|.+ ...|||+|..|..|...-+.+
T Consensus 2 eeelkc~vc~~f~~e---piil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE---PIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccC---ceEeecccHHHHHHHHhhccc
Confidence 577899999988884 468999999999999987765
No 96
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=0.085 Score=46.55 Aligned_cols=40 Identities=33% Similarity=0.679 Sum_probs=30.1
Q ss_pred ccccccccccCceeEEeCCCCc-ccHhhHHHHHhcCCCCcccccccCC
Q 048433 217 CTICLEQVKCGELVRSLPCLHQ-FHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 217 C~ICle~~~~~~~v~~LpC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
|-.|-+. +..+..+||.|. +|..|-.. ...||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 8889554 346888999985 89999654 4559999876554
No 97
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=91.70 E-value=0.14 Score=41.80 Aligned_cols=51 Identities=29% Similarity=0.512 Sum_probs=38.1
Q ss_pred cccccccccccccCceeEEe-C---CCCcccHhhHHHHHhc---CCCCcccccccCCCCCC
Q 048433 214 ELTCTICLEQVKCGELVRSL-P---CLHQFHANCIDPWLRQ---RGTCPVCKFRMGSGWQE 267 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~L-p---C~H~Fh~~CI~~WL~~---~~~CP~CR~~i~~~~~~ 267 (279)
-.+|.||.|...+. +-| | ||-..|..|-...++. ...||+|+..+++....
T Consensus 80 lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~~ 137 (140)
T PF05290_consen 80 LYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSSA 137 (140)
T ss_pred ceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccccc
Confidence 46899998876532 222 2 8999999998876653 66799999999877654
No 98
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.25 E-value=0.28 Score=46.72 Aligned_cols=28 Identities=21% Similarity=0.864 Sum_probs=21.9
Q ss_pred CCCcccHhhHHHHHhc-------------CCCCcccccccC
Q 048433 235 CLHQFHANCIDPWLRQ-------------RGTCPVCKFRMG 262 (279)
Q Consensus 235 C~H~Fh~~CI~~WL~~-------------~~~CP~CR~~i~ 262 (279)
|.-..|.+|+-+|+.. +..||+||+++.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 5667899999999852 235999999865
No 99
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=0.11 Score=54.10 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=28.5
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHH
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWL 248 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL 248 (279)
+....|.+|...+... .-.+.||||.||.+|+.+-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 4556899998876643 45678999999999998865
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.13 Score=47.68 Aligned_cols=47 Identities=26% Similarity=0.508 Sum_probs=31.4
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
-.|--|=-.+. .--+.+||.|+||.+|... ..-+.||.|-.+|..-.
T Consensus 91 HfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 91 HFCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRIE 137 (389)
T ss_pred EeecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHHHHHH
Confidence 34666733322 2345689999999999754 34668999987765443
No 101
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.84 E-value=0.25 Score=47.18 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=39.7
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCC---CCccccc
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG---TCPVCKF 259 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~---~CP~CR~ 259 (279)
....|||=-+.-...+....|.|||+.+.+-+.+..++.. .||.|-.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 3568999988888888888999999999999999887644 5999943
No 102
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.74 E-value=0.45 Score=32.93 Aligned_cols=39 Identities=26% Similarity=0.651 Sum_probs=31.2
Q ss_pred cccccccccccccCceeEEeC-CCCcccHhhHHHHHhcCCCCcc
Q 048433 214 ELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQRGTCPV 256 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~~~~~CP~ 256 (279)
...|.+|-+.|..++++++-| ||-.+|.+|..+ .+.|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 347999999998778888888 999999999544 455655
No 103
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=89.63 E-value=0.12 Score=34.63 Aligned_cols=44 Identities=25% Similarity=0.593 Sum_probs=25.7
Q ss_pred cccccccccccCceeEEeCC-CCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 216 TCTICLEQVKCGELVRSLPC-LHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC-~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
.|--|+-..+ ....| .|..|..|+...+.....||+|..+++.+
T Consensus 4 nCKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANK-----GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--S-----SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcCC-----CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 4666764422 24557 49999999999999999999999998865
No 104
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.35 E-value=0.2 Score=51.39 Aligned_cols=40 Identities=33% Similarity=0.720 Sum_probs=28.4
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcc
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPV 256 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~ 256 (279)
.|.||--.+. +.......|+|..|.+|...|++....||.
T Consensus 1030 ~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 4666543333 122234569999999999999999999984
No 105
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.44 E-value=0.4 Score=49.65 Aligned_cols=53 Identities=23% Similarity=0.569 Sum_probs=38.2
Q ss_pred CCcccccccccccccCceeEEeCCCCc-----ccHhhHHHHHhc--CCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQ-----FHANCIDPWLRQ--RGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~-----Fh~~CI~~WL~~--~~~CP~CR~~i~~~~ 265 (279)
+++..|-||..+=.+++. ..=||+.. .|.+|+..|+.- ...|-+|+.+++-+.
T Consensus 10 ~d~~~CRICr~e~~~d~p-LfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDP-LFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred ccchhceeecCCCCCCCc-CcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 445789999887665543 34466543 799999999985 445999998776443
No 106
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=0.2 Score=48.19 Aligned_cols=37 Identities=22% Similarity=0.592 Sum_probs=26.8
Q ss_pred cccccccccccccC-ceeEEeCCCCcccHhhHHHHHhc
Q 048433 214 ELTCTICLEQVKCG-ELVRSLPCLHQFHANCIDPWLRQ 250 (279)
Q Consensus 214 ~~~C~ICle~~~~~-~~v~~LpC~H~Fh~~CI~~WL~~ 250 (279)
..+|.||..+.... .......|+|.||.+|.++.+..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 45799999444333 33345669999999999988863
No 107
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.07 E-value=0.51 Score=43.34 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=36.1
Q ss_pred cccccccccccccCce-eEEeCCCC-----cccHhhHHHHHh--cCCCCcccccccCCC
Q 048433 214 ELTCTICLEQVKCGEL-VRSLPCLH-----QFHANCIDPWLR--QRGTCPVCKFRMGSG 264 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~-v~~LpC~H-----~Fh~~CI~~WL~--~~~~CP~CR~~i~~~ 264 (279)
+..|-||.++...... ....||.. ..|..|+..|+. .+..|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4679999987654321 34566633 379999999998 456799998865544
No 108
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.72 E-value=0.32 Score=43.97 Aligned_cols=52 Identities=27% Similarity=0.651 Sum_probs=33.4
Q ss_pred CCCcccccccccccccCcee-EEeCC-----CCcccHhhHHHHHhcC--------CCCcccccccC
Q 048433 211 SEDELTCTICLEQVKCGELV-RSLPC-----LHQFHANCIDPWLRQR--------GTCPVCKFRMG 262 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v-~~LpC-----~H~Fh~~CI~~WL~~~--------~~CP~CR~~i~ 262 (279)
.+.+..|=||+..=++.... =+-|| .|..|..|+.+|+..+ -.||.|+....
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 35566899997753322110 12355 3679999999999432 24999988654
No 109
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.71 E-value=0.53 Score=43.30 Aligned_cols=48 Identities=21% Similarity=0.519 Sum_probs=33.7
Q ss_pred cccccccc-cccCce-eEEeCCCCcccHhhHHHHHhc-CCCCcccccccCC
Q 048433 216 TCTICLEQ-VKCGEL-VRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGS 263 (279)
Q Consensus 216 ~C~ICle~-~~~~~~-v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~ 263 (279)
.|++|-.. |-.++. +..-+|+|..|.+|....+.. ...||.|-..+-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 48888764 333332 222369999999999998865 6679999665543
No 110
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=85.85 E-value=0.2 Score=51.10 Aligned_cols=50 Identities=32% Similarity=0.626 Sum_probs=38.9
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhcC---CCCcccccccCCCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQR---GTCPVCKFRMGSGWQ 266 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~---~~CP~CR~~i~~~~~ 266 (279)
..+|+||.+.+..+ ..+.|-|.||..|+..-+... ..||+|+..+.....
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~ 73 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL 73 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence 45899999998865 467899999999988766543 459999877665543
No 111
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.68 E-value=0.42 Score=44.01 Aligned_cols=30 Identities=17% Similarity=0.525 Sum_probs=23.4
Q ss_pred CCCcccHhhHHHHHh-------------cCCCCcccccccCCC
Q 048433 235 CLHQFHANCIDPWLR-------------QRGTCPVCKFRMGSG 264 (279)
Q Consensus 235 C~H~Fh~~CI~~WL~-------------~~~~CP~CR~~i~~~ 264 (279)
|....|.+|+.+|+. ++.+||+||+.+.-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 667789999999973 355799999987643
No 112
>PLN02189 cellulose synthase
Probab=85.68 E-value=0.95 Score=48.43 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=34.2
Q ss_pred cccccccccccc---cCceeEEeC-CCCcccHhhHHHHHh-cCCCCcccccccC
Q 048433 214 ELTCTICLEQVK---CGELVRSLP-CLHQFHANCIDPWLR-QRGTCPVCKFRMG 262 (279)
Q Consensus 214 ~~~C~ICle~~~---~~~~v~~Lp-C~H~Fh~~CI~~WL~-~~~~CP~CR~~i~ 262 (279)
...|.||-+++. .|+.-+... |+--.|..|.+-=-+ .++.||.||.+..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 347999999875 233333333 787889999854333 3667999999887
No 113
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.66 E-value=0.62 Score=42.80 Aligned_cols=40 Identities=28% Similarity=0.520 Sum_probs=29.0
Q ss_pred CCcccccccccccccCceeEEeC--CCCcccHhhHHHHHhcCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLP--CLHQFHANCIDPWLRQRG 252 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~Lp--C~H~Fh~~CI~~WL~~~~ 252 (279)
...+.|.+|.|.++.. ..+..| =.|.||..|-+.-+|++.
T Consensus 266 ~apLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CCceeehhhhhhhccC-ceeecCCCcccceecccCHHHHHhhc
Confidence 3457899999998832 222223 289999999999998654
No 114
>PLN02436 cellulose synthase A
Probab=81.96 E-value=1.6 Score=46.96 Aligned_cols=48 Identities=29% Similarity=0.570 Sum_probs=33.8
Q ss_pred ccccccccccc---cCceeEEeC-CCCcccHhhHHHHHh-cCCCCcccccccC
Q 048433 215 LTCTICLEQVK---CGELVRSLP-CLHQFHANCIDPWLR-QRGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~---~~~~v~~Lp-C~H~Fh~~CI~~WL~-~~~~CP~CR~~i~ 262 (279)
..|-||-+++. .|+.-+... |+--.|..|.+-=-+ .++.||.||.+..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999999864 333333333 787799999854333 3667999999887
No 115
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.83 E-value=0.72 Score=41.43 Aligned_cols=48 Identities=21% Similarity=0.598 Sum_probs=34.2
Q ss_pred Ccccccccccc-cccCc-eeEEeC-CCCcccHhhHHHHHhc-CCCCc--ccccc
Q 048433 213 DELTCTICLEQ-VKCGE-LVRSLP-CLHQFHANCIDPWLRQ-RGTCP--VCKFR 260 (279)
Q Consensus 213 e~~~C~ICle~-~~~~~-~v~~Lp-C~H~Fh~~CI~~WL~~-~~~CP--~CR~~ 260 (279)
.+..||||..+ |-.++ ....-| |-|..|..|+++.+.. ...|| -|..-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 34579999875 33333 333345 9999999999999876 56699 78543
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.75 E-value=1.3 Score=45.81 Aligned_cols=41 Identities=24% Similarity=0.526 Sum_probs=29.6
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcc
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPV 256 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~ 256 (279)
..|.+|-..+. |..+-.--|||.-|.+|+.+|+.....||.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 36999965544 222222229999999999999998888766
No 117
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=81.30 E-value=2 Score=29.05 Aligned_cols=43 Identities=23% Similarity=0.642 Sum_probs=20.3
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhc-----CCCCcccccc
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-----RGTCPVCKFR 260 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-----~~~CP~CR~~ 260 (279)
..|+|....+. ..++...|.|.-|.+ +..|+.. .-.||+|.++
T Consensus 3 L~CPls~~~i~--~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIR--IPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-S--SEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEE--eCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46999988877 355667799985543 3445532 2359999763
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.24 E-value=0.68 Score=44.61 Aligned_cols=43 Identities=28% Similarity=0.562 Sum_probs=31.5
Q ss_pred ccccccccccccCc--eeEEeCCCCcccHhhHHHHHhcCCCCccc
Q 048433 215 LTCTICLEQVKCGE--LVRSLPCLHQFHANCIDPWLRQRGTCPVC 257 (279)
Q Consensus 215 ~~C~ICle~~~~~~--~v~~LpC~H~Fh~~CI~~WL~~~~~CP~C 257 (279)
..|++|.-.++... ...+-.|||.||..|...|...+..|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 46888876654333 33344499999999999999888887655
No 119
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=81.11 E-value=0.54 Score=47.43 Aligned_cols=43 Identities=28% Similarity=0.753 Sum_probs=27.3
Q ss_pred cccccccccc-----cccCceeEEeCCCCcccHhhHHHHHhcCCCCccccc
Q 048433 214 ELTCTICLEQ-----VKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKF 259 (279)
Q Consensus 214 ~~~C~ICle~-----~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~ 259 (279)
...|.+|... |+.....+...|++.||..|.. +.+..||.|-+
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~---r~s~~CPrC~R 558 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLR---RKSPCCPRCER 558 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHh---ccCCCCCchHH
Confidence 4578888332 2222233345599999999954 45666999933
No 120
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.69 E-value=0.72 Score=46.76 Aligned_cols=43 Identities=30% Similarity=0.584 Sum_probs=31.2
Q ss_pred cccccccccccccCc-eeEEeCCCCcccHhhHHHHHhcCCCCccccc
Q 048433 214 ELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLRQRGTCPVCKF 259 (279)
Q Consensus 214 ~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~ 259 (279)
-..|.||+..|.... ..+.|-|||..|..|+.... +.+|| |++
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 457999988776433 34556799999999998764 55677 654
No 121
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.54 E-value=1.7 Score=43.73 Aligned_cols=50 Identities=30% Similarity=0.702 Sum_probs=38.7
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCCCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQENR 269 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~~~ 269 (279)
....|.||+++. ..+..+|. |..|..+|+..+..||.|+..+......+.
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~ 527 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLSK 527 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccCc
Confidence 345799998887 23456687 899999999999999999887766554443
No 122
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=74.32 E-value=4.9 Score=29.88 Aligned_cols=52 Identities=25% Similarity=0.400 Sum_probs=19.8
Q ss_pred cccccccccccccCc--eeE--EeCCCCcccHhhHHHHHh-cCCCCcccccccCCCC
Q 048433 214 ELTCTICLEQVKCGE--LVR--SLPCLHQFHANCIDPWLR-QRGTCPVCKFRMGSGW 265 (279)
Q Consensus 214 ~~~C~ICle~~~~~~--~v~--~LpC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~~~~ 265 (279)
...|-||-+++.... .+- .-.|+--.|..|..-=.+ .++.||.|+.+.....
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 347999988864322 121 223777789999876554 3677999998877444
No 123
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=73.84 E-value=5.4 Score=43.09 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=32.7
Q ss_pred ccccccccccccC---ceeEEe-CCCCcccHhhHHHHHh-cCCCCcccccccC
Q 048433 215 LTCTICLEQVKCG---ELVRSL-PCLHQFHANCIDPWLR-QRGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~~~---~~v~~L-pC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~ 262 (279)
..|-||-+++... +.-+.. .|+--.|..|.+==-+ .++.||.||.+.+
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4799999986533 222222 3777789999843222 3667999999877
No 124
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.67 E-value=1.9 Score=42.19 Aligned_cols=36 Identities=28% Similarity=0.624 Sum_probs=29.1
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ 250 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~ 250 (279)
....|-||.+.+.. ....+.|||.||..|+...+.+
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 34589999988774 4567789999999999988853
No 125
>PLN02400 cellulose synthase
Probab=72.43 E-value=3.6 Score=44.41 Aligned_cols=49 Identities=22% Similarity=0.476 Sum_probs=32.7
Q ss_pred cccccccccccccC---cee-EEeCCCCcccHhhHHHHHh-cCCCCcccccccC
Q 048433 214 ELTCTICLEQVKCG---ELV-RSLPCLHQFHANCIDPWLR-QRGTCPVCKFRMG 262 (279)
Q Consensus 214 ~~~C~ICle~~~~~---~~v-~~LpC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~ 262 (279)
...|-||-+++... +.- ..-.|+--.|..|.+==-+ .++.||.||.+.+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 34799999986533 222 2223777789999843222 3667999999887
No 126
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=71.05 E-value=2.2 Score=37.70 Aligned_cols=43 Identities=35% Similarity=0.806 Sum_probs=35.0
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccc
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCK 258 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR 258 (279)
-..|.+|..-.-.+ ++.=.|+-.+|..|+...+.....||.|.
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 45899998877644 34445888899999999999999999993
No 127
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=70.62 E-value=6.5 Score=42.38 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=33.4
Q ss_pred cccccccccccccC---ceeEEe-CCCCcccHhhHHHHHh-cCCCCcccccccC
Q 048433 214 ELTCTICLEQVKCG---ELVRSL-PCLHQFHANCIDPWLR-QRGTCPVCKFRMG 262 (279)
Q Consensus 214 ~~~C~ICle~~~~~---~~v~~L-pC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~ 262 (279)
...|-||-+++... +.-+.. .|+--.|..|.+-=.+ .+..||.|+.+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 44799999886533 222222 3777799999854333 3667999999887
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=69.69 E-value=4.1 Score=38.26 Aligned_cols=50 Identities=24% Similarity=0.524 Sum_probs=37.5
Q ss_pred ccccccccccccCceeEEeC--CCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 215 LTCTICLEQVKCGELVRSLP--CLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~Lp--C~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
..|+||.+.....+ ...+| |++..|..|...-......||.||.+...+.
T Consensus 250 ~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCcccccc-cccccccccccchhhhhhcccccCCCCCccCCccccCc
Confidence 57999988764332 23455 8888888898888888999999997665444
No 129
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.97 E-value=2.1 Score=44.38 Aligned_cols=43 Identities=23% Similarity=0.471 Sum_probs=31.3
Q ss_pred cccccccccccccC----ceeEEeCCCCcccHhhHHHHHhcCCCCccc
Q 048433 214 ELTCTICLEQVKCG----ELVRSLPCLHQFHANCIDPWLRQRGTCPVC 257 (279)
Q Consensus 214 ~~~C~ICle~~~~~----~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~C 257 (279)
+..|.-|++..... +.+.++.|||.||..|+.--..+++ |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 44799998876422 3667888999999999876654444 6555
No 130
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=67.92 E-value=0.66 Score=33.82 Aligned_cols=40 Identities=20% Similarity=0.485 Sum_probs=20.8
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~ 262 (279)
..||.|..++.... +|.+|..|-.. ++....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 46999987766322 66677777654 345667888877653
No 131
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=67.29 E-value=2.7 Score=24.63 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=12.2
Q ss_pred cccccccccccCceeEEeC-CCCcc
Q 048433 216 TCTICLEQVKCGELVRSLP-CLHQF 239 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~Lp-C~H~F 239 (279)
.||-|-..+.. ....-| |||.|
T Consensus 2 ~CP~C~~~V~~--~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE--SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh--hcCcCCCCCCCC
Confidence 47777666542 223344 77766
No 132
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=66.82 E-value=5.2 Score=32.90 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=20.9
Q ss_pred CCChhHHHHHHHHHHHHHHhhHHHH
Q 048433 56 QMSPNFLLWLVVGVFLIATSLRMYA 80 (279)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (279)
.+|-|.|.||++|||.+.-+++...
T Consensus 100 Glsn~~LgwIL~gVf~lIWslY~~~ 124 (138)
T PF07123_consen 100 GLSNNLLGWILLGVFGLIWSLYFVY 124 (138)
T ss_pred cccCchhHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999888776543
No 133
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.13 E-value=2.4 Score=39.34 Aligned_cols=51 Identities=25% Similarity=0.525 Sum_probs=40.3
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
+...|.||...+..++ +.-.|.|.|+..|-..|.+..+.||.|+.......
T Consensus 104 ~~~~~~~~~g~l~vpt--~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~ 154 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPT--RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVL 154 (324)
T ss_pred CccceeeeeeeEEecc--cccCceeeeeecCCchhhhhhhccchhhcCcCcee
Confidence 3457999988877543 12239999999999999999999999998776544
No 134
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=64.97 E-value=3.7 Score=29.52 Aligned_cols=12 Identities=42% Similarity=1.137 Sum_probs=8.8
Q ss_pred cccHhhHHHHHh
Q 048433 238 QFHANCIDPWLR 249 (279)
Q Consensus 238 ~Fh~~CI~~WL~ 249 (279)
-||..|+.+|++
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 135
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=64.88 E-value=12 Score=32.03 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=20.9
Q ss_pred CcCCCeeeec-cCcccccchhHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 048433 20 IAEQPAVRIH-ATRPVNVNSLAFLVIVLLLFMILNSHQMSPNFLLWLVV 67 (279)
Q Consensus 20 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 67 (279)
-|+|+.+|-. -+|- |...+.+-+++++|+..|. ..+|.+-+|..+
T Consensus 61 GP~Rr~vRD~VDsR~-~i~e~fmP~alv~lv~~~v--~~~~~~~~~~~~ 106 (170)
T PF11241_consen 61 GPVRRYVRDYVDSRR-NIGEFFMPVALVLLVLSFV--VPSPQVQLYVTL 106 (170)
T ss_pred cchhhhhhhhhhccc-chHHHHHHHHHHHHHHHHH--cccHHHHHHHHH
Confidence 3778888855 4443 3333333333333333332 334555555433
No 136
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=63.74 E-value=7.7 Score=36.37 Aligned_cols=51 Identities=22% Similarity=0.530 Sum_probs=32.5
Q ss_pred CCcccccccccccc---------------cCc-eeEEeCCCCcccHhhHHHHHhc---------CCCCcccccccC
Q 048433 212 EDELTCTICLEQVK---------------CGE-LVRSLPCLHQFHANCIDPWLRQ---------RGTCPVCKFRMG 262 (279)
Q Consensus 212 ~e~~~C~ICle~~~---------------~~~-~v~~LpC~H~Fh~~CI~~WL~~---------~~~CP~CR~~i~ 262 (279)
..+.+|++|+..=. .|. ....-||||+--..-.+-|.+. +..||.|-+.+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 34568999976421 000 1223579998777778888753 335999976654
No 137
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=63.00 E-value=35 Score=26.52 Aligned_cols=47 Identities=26% Similarity=0.468 Sum_probs=30.7
Q ss_pred eeec-cCcccccchhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHH
Q 048433 26 VRIH-ATRPVNVNSLAFLVIVLLLFMILNSHQMSPNFLLWLVVGVFLIATSLRMY 79 (279)
Q Consensus 26 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 79 (279)
|-|. ++-.|.++...+++.++++|.+++ +++|++..++-+-...+-+
T Consensus 3 V~I~~~~~~ie~sl~~~~~~l~~~~~~l~-------ll~~ll~~~~~~p~~~~~~ 50 (108)
T PF07219_consen 3 VLISWGGYRIETSLWVALILLLLLFVVLY-------LLLRLLRRLLSLPSRVRRW 50 (108)
T ss_pred EEEEECCEEEEeeHHHHHHHHHHHHHHHH-------HHHHHHHHHHhChHHHHHH
Confidence 3344 677788888888888888888883 3666666655544444333
No 138
>PLN02195 cellulose synthase A
Probab=63.00 E-value=9.2 Score=40.99 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=33.0
Q ss_pred ccccccccccccC---ceeEE-eCCCCcccHhhHHHHHh-cCCCCcccccccC
Q 048433 215 LTCTICLEQVKCG---ELVRS-LPCLHQFHANCIDPWLR-QRGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~~~---~~v~~-LpC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~ 262 (279)
..|-||-+.+... +.-+. -.|+--.|..|.+==-+ .++.||.|+.+.+
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 3799998876533 22222 23888899999843333 2667999999998
No 139
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=59.75 E-value=6.8 Score=36.71 Aligned_cols=47 Identities=17% Similarity=0.310 Sum_probs=36.3
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc---CCCCcccc
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ---RGTCPVCK 258 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~---~~~CP~CR 258 (279)
..-..||+=-+.-...+....+.|||+.-.+-+++.-++ ...||.|-
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 345689998777776677788999999999998887664 33499993
No 140
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=59.46 E-value=16 Score=27.59 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=18.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHH
Q 048433 47 LLFMILNSHQMSPNFLLWLVVGVFLIATSLRMY 79 (279)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 79 (279)
.+|+|| |.|+++.++.+..+-+.|
T Consensus 26 ~ifkll---------L~WlvlsLl~I~lAWk~y 49 (92)
T PF15128_consen 26 QIFKLL---------LGWLVLSLLAIHLAWKVY 49 (92)
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHHh
Confidence 578888 889999977766655555
No 141
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=57.95 E-value=8.1 Score=26.41 Aligned_cols=41 Identities=24% Similarity=0.480 Sum_probs=19.3
Q ss_pred ccccccccccCc------eeEEeC-CCCcccHhhHHHHHhcCCCCccc
Q 048433 217 CTICLEQVKCGE------LVRSLP-CLHQFHANCIDPWLRQRGTCPVC 257 (279)
Q Consensus 217 C~ICle~~~~~~------~v~~Lp-C~H~Fh~~CI~~WL~~~~~CP~C 257 (279)
|--|+..|..+. ....-| |++.||.+|=.-.=..-..||-|
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC 49 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGC 49 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCC
Confidence 444555555432 122334 99999999943322345569988
No 142
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=57.54 E-value=20 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.588 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 048433 39 LAFLVIVLLLFMILNSHQMSPNFLLWLVVG 68 (279)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 68 (279)
-+.-+.++++|.|+...-.+++|++|.++=
T Consensus 30 yimPivtf~i~Lil~~t~fn~SFf~WvvvY 59 (82)
T PF10852_consen 30 YIMPIVTFAISLILTFTLFNPSFFFWVVVY 59 (82)
T ss_pred ehHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 344455566778888888999999999643
No 143
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=57.03 E-value=7.9 Score=31.07 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=20.0
Q ss_pred CCChhHHHHHHHHHHHHHHhhHHH
Q 048433 56 QMSPNFLLWLVVGVFLIATSLRMY 79 (279)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~~~~~~~ 79 (279)
.+|-|.|.|+++|||-+..+++..
T Consensus 89 Glsn~~LgwIL~gVf~liw~ly~~ 112 (128)
T PLN00077 89 GLSNNLLGWILLGVFGLIWSLYTT 112 (128)
T ss_pred cccCchhhHHHHhHHHHHHHHHhh
Confidence 578899999999999988776554
No 144
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=56.61 E-value=4.3 Score=27.60 Aligned_cols=38 Identities=29% Similarity=0.645 Sum_probs=20.8
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHh--cCCCCccccccc
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR--QRGTCPVCKFRM 261 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~--~~~~CP~CR~~i 261 (279)
...||.|-+.+.... | +.| |...-.. ..-.||+|...+
T Consensus 2 ~f~CP~C~~~~~~~~----L-~~H-----~~~~H~~~~~~v~CPiC~~~~ 41 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS----L-VEH-----CEDEHRSESKNVVCPICSSRV 41 (54)
T ss_pred CcCCCCCCCccCHHH----H-HHH-----HHhHCcCCCCCccCCCchhhh
Confidence 467999988655332 2 222 3332222 234599997643
No 145
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=56.59 E-value=6.5 Score=27.83 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=17.7
Q ss_pred CcccccccccccccCceeEE-eCCCCcccHhhHHHHH
Q 048433 213 DELTCTICLEQVKCGELVRS-LPCLHQFHANCIDPWL 248 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~-LpC~H~Fh~~CI~~WL 248 (279)
+...|.+|...|.--..-.. -.||+.||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 34579999999964322112 3399999999986554
No 146
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=55.32 E-value=8.4 Score=33.71 Aligned_cols=41 Identities=29% Similarity=0.747 Sum_probs=26.7
Q ss_pred cccccccccc-----cccCceeEEeCCCCcccHhhHHHHHhcCCCCccccc
Q 048433 214 ELTCTICLEQ-----VKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKF 259 (279)
Q Consensus 214 ~~~C~ICle~-----~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~ 259 (279)
...|-||-.. |+.....+.-.|+-.||..|.. +..||-|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 3578888652 3332223333499999999965 267999944
No 147
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=53.96 E-value=20 Score=26.46 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHhc
Q 048433 39 LAFLVIVLLLFMILNS 54 (279)
Q Consensus 39 ~~~~~~~~~~~~~~~~ 54 (279)
..||+..+++|+|+..
T Consensus 3 ~~fl~~plivf~ifVa 18 (75)
T PF06667_consen 3 FEFLFVPLIVFMIFVA 18 (75)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4577888888888833
No 148
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.61 E-value=3.7 Score=33.76 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=26.8
Q ss_pred CCCcccccccccc-cccCceeEEeCCCCcccHhhHHHHHhc-CC---CCcccccc
Q 048433 211 SEDELTCTICLEQ-VKCGELVRSLPCLHQFHANCIDPWLRQ-RG---TCPVCKFR 260 (279)
Q Consensus 211 ~~e~~~C~ICle~-~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~---~CP~CR~~ 260 (279)
..++.+|-||+.. |..|......-|.-.||..|.-+.-.+ ++ .|-+|+..
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 3567799999864 443322222223334666665543222 22 38999764
No 149
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=51.02 E-value=15 Score=26.31 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.9
Q ss_pred CCChhHHHHHHHHHHHHHHhhHH
Q 048433 56 QMSPNFLLWLVVGVFLIATSLRM 78 (279)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~~~~~~ 78 (279)
.+|-|.|.|+++|||.+.-+++.
T Consensus 28 Gls~~~LgwIL~gvf~liw~ly~ 50 (67)
T PLN00082 28 GVSNGKLTWILVGVTALIWALYF 50 (67)
T ss_pred cccCchhhhHHHHHHHHHHHHHh
Confidence 46778999999999987765543
No 151
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=50.43 E-value=29 Score=30.77 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHH-hHHHhcCCCccc
Q 048433 39 LAFLVIVLLLFMILNSHQMSPNFLLWLVVGVFLIATSLRMYATCQQL-QAQARA-HAAAASGLLSHT 103 (279)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l-q~~~~~-~~~~~~g~l~~~ 103 (279)
||.||++.+||+|-- .+++.-.++|.-.-+..+-+|+ ..|.++ ....|+..||++
T Consensus 131 LIClIIIAVLfLICT----------~LfLSTVVLANKVS~LKrskQ~gKRqpRSNGDFLASSgLWPa 187 (227)
T PF05399_consen 131 LICLIIIAVLFLICT----------LLFLSTVVLANKVSSLKRSKQVGKRQPRSNGDFLASSGLWPA 187 (227)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhccCCCcccceeeccccCcc
Confidence 444555555555541 1344444555544444455542 122222 133355456844
No 152
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=50.08 E-value=21 Score=33.53 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=14.4
Q ss_pred CCChhHHHHHHHHHHHHH
Q 048433 56 QMSPNFLLWLVVGVFLIA 73 (279)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~ 73 (279)
+...+=|||++.|.|+..
T Consensus 304 F~vnSkLlWFLaG~l~ty 321 (323)
T PHA02688 304 FDVNSKLLWFLAGTLFTY 321 (323)
T ss_pred hcCCchHHHHHHHhHHhe
Confidence 566788999999987653
No 153
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=50.04 E-value=2.7 Score=38.67 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=20.0
Q ss_pred cccccccccccccCceeEEe---CCCCcccHhhHHHHHhcCCCCcccccc
Q 048433 214 ELTCTICLEQVKCGELVRSL---PCLHQFHANCIDPWLRQRGTCPVCKFR 260 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~L---pC~H~Fh~~CI~~WL~~~~~CP~CR~~ 260 (279)
...||||-..-.-+. +..- .-.|.+|.-|-..|-..+..||.|-..
T Consensus 172 ~g~CPvCGs~P~~s~-l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSV-LRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEE-EE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEE-EecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 458999965432111 0000 014567888999998888899999544
No 154
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=48.19 E-value=9.9 Score=30.79 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=20.6
Q ss_pred CCChhHHHHHHHHHHHHHHhhHHHH
Q 048433 56 QMSPNFLLWLVVGVFLIATSLRMYA 80 (279)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (279)
.+|-|.|.|+++|||.+..+++...
T Consensus 99 Glsn~~LgwIL~gVf~lIWslYf~~ 123 (137)
T PLN00092 99 GLSNNLLGWILLGVFGLIWSLYFVY 123 (137)
T ss_pred cccCcchhhHHHhHHHHHHHHHhee
Confidence 5788999999999999887766543
No 155
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=48.14 E-value=18 Score=27.95 Aligned_cols=25 Identities=24% Similarity=0.632 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHH
Q 048433 41 FLVIVLLLFMILNSHQMSPNFLLWL 65 (279)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (279)
++..++.+|++.|....+-||++|-
T Consensus 32 lillLllifav~Nt~~V~~~~lfg~ 56 (98)
T COG5416 32 LILLLLLIFAVINTDSVEFNYLFGQ 56 (98)
T ss_pred HHHHHHHHHHHhccCceEEEeecch
Confidence 3344556777888888888999985
No 156
>PRK09458 pspB phage shock protein B; Provisional
Probab=48.07 E-value=24 Score=26.05 Aligned_cols=14 Identities=36% Similarity=0.709 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHH
Q 048433 39 LAFLVIVLLLFMIL 52 (279)
Q Consensus 39 ~~~~~~~~~~~~~~ 52 (279)
..||++-+++|+|+
T Consensus 3 ~~fl~~PliiF~if 16 (75)
T PRK09458 3 ALFLAIPLTIFVLF 16 (75)
T ss_pred chHHHHhHHHHHHH
Confidence 56788888889888
No 157
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.84 E-value=18 Score=32.97 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=37.6
Q ss_pred CCcccccccccccccCc-eeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCCCC
Q 048433 212 EDELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQEN 268 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~~ 268 (279)
.....|+|---++...- -....+|||+|-..-+.+. ....|++|.+.+.......
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEe
Confidence 34567998755555222 2345679999998777664 3678999999887765544
No 158
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=47.43 E-value=72 Score=30.92 Aligned_cols=49 Identities=16% Similarity=0.394 Sum_probs=35.0
Q ss_pred eeec-cCcccccchhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHHHH
Q 048433 26 VRIH-ATRPVNVNSLAFLVIVLLLFMILNSHQMSPNFLLWLVVGVFLIATSLRMYAT 81 (279)
Q Consensus 26 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (279)
|.|. +.+.|.++-..|++..+++++|+ .+++|++-.||-+-...+.|-.
T Consensus 28 VlI~~~~~~ie~Sl~~lv~~~ii~lvv~-------~~l~~~l~~v~~~~~~~~~w~~ 77 (400)
T COG3071 28 VLIQTDNYNIEMSLTTLVIFLIIALVVL-------YLLEWLLRRVLRTPAHTRGWFS 77 (400)
T ss_pred eEEEecceeeeeeHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCcHHHHHHHH
Confidence 5565 67777777777777777778877 4699999997766554555533
No 159
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=47.32 E-value=11 Score=34.61 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=31.5
Q ss_pred ccccccccccccCceeEE-e---CCCCcccHhhHHHHHhc---------CCCCcccccc
Q 048433 215 LTCTICLEQVKCGELVRS-L---PCLHQFHANCIDPWLRQ---------RGTCPVCKFR 260 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~-L---pC~H~Fh~~CI~~WL~~---------~~~CP~CR~~ 260 (279)
..|-+|.+++.+.+..+. - .|+-.+|..|+..-+.. .+.||.|++.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 479999999854433222 1 17778999999984432 4459999874
No 160
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=47.20 E-value=72 Score=24.03 Aligned_cols=42 Identities=12% Similarity=0.220 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHhhHHHHH
Q 048433 40 AFLVIVLLLFMILNSHQ-MSPNFLLWLVVGVFLIATSLRMYAT 81 (279)
Q Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (279)
++++.++++|+.+.--. ..-++++.+++.+.++.-.+++|..
T Consensus 4 ~~~~~~Li~~~fi~~k~~~~s~li~~~LilfviF~~~L~~yy~ 46 (83)
T PF05814_consen 4 YSLFLALIVLGFIFDKNEGFSELIITLLILFVIFFCVLQVYYI 46 (83)
T ss_pred HHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555554333 4455555566666666667888743
No 161
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=47.03 E-value=17 Score=34.35 Aligned_cols=44 Identities=20% Similarity=0.415 Sum_probs=29.4
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCccccc
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKF 259 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~ 259 (279)
.|-.|.+........+.-.|.|.||.+|=.-.-..-..||-|..
T Consensus 332 ~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 332 FCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred ceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 37777666554444444449999999995444345567999964
No 162
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=47.02 E-value=12 Score=24.56 Aligned_cols=44 Identities=23% Similarity=0.643 Sum_probs=28.1
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHh------cCCCCccccc
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR------QRGTCPVCKF 259 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~------~~~~CP~CR~ 259 (279)
.|.||...-..+..+.--.|+..||..|+..-.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3889988444333333334899999999876543 1345888853
No 163
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=46.70 E-value=6.5 Score=37.89 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=0.0
Q ss_pred ccccccccccccCc-----------eeEEeCCCCcccHhhHHHHHh------cCCCCcccccc
Q 048433 215 LTCTICLEQVKCGE-----------LVRSLPCLHQFHANCIDPWLR------QRGTCPVCKFR 260 (279)
Q Consensus 215 ~~C~ICle~~~~~~-----------~v~~LpC~H~Fh~~CI~~WL~------~~~~CP~CR~~ 260 (279)
.+|+|=|..+.-+. ...-|.|||++..+ .|-. ...+||+||..
T Consensus 278 pQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 278 PQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 36877766553221 22346799986543 4653 24569999875
No 164
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.37 E-value=10 Score=34.32 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=26.2
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHh
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR 249 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~ 249 (279)
..|+.||..+..+ ...|=||.|+.+||...+.
T Consensus 44 dcCsLtLqPc~dP---vit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 44 DCCSLTLQPCRDP---VITPDGYLFDREAILEYIL 75 (303)
T ss_pred ceeeeecccccCC---ccCCCCeeeeHHHHHHHHH
Confidence 4699999998843 4677899999999998763
No 165
>PLN02248 cellulose synthase-like protein
Probab=46.21 E-value=19 Score=39.20 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=28.6
Q ss_pred eCCCCcccHhhHHHHHhcCCCCcccccccCCCCCC
Q 048433 233 LPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQE 267 (279)
Q Consensus 233 LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~ 267 (279)
..|++..|.+|...-++....||-||.+.......
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1135)
T PLN02248 148 CECGFKICRDCYIDAVKSGGICPGCKEPYKVTDLD 182 (1135)
T ss_pred ccccchhHHhHhhhhhhcCCCCCCCcccccccccc
Confidence 33788899999999999999999999988654433
No 166
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.98 E-value=3.9 Score=37.50 Aligned_cols=47 Identities=30% Similarity=0.512 Sum_probs=36.3
Q ss_pred cccccccccccccCc---eeEEeC--------CCCcccHhhHHHHHhcC-CCCcccccc
Q 048433 214 ELTCTICLEQVKCGE---LVRSLP--------CLHQFHANCIDPWLRQR-GTCPVCKFR 260 (279)
Q Consensus 214 ~~~C~ICle~~~~~~---~v~~Lp--------C~H~Fh~~CI~~WL~~~-~~CP~CR~~ 260 (279)
+..|.||...+...+ ..+.+. |||..|..|+..-+.+. ..||.|+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 357999999888432 334456 99999999999998764 479999874
No 167
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=45.97 E-value=27 Score=32.81 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=14.1
Q ss_pred CCChhHHHHHHHHHHHHH
Q 048433 56 QMSPNFLLWLVVGVFLIA 73 (279)
Q Consensus 56 ~~~~~~l~~~~~~~~~~~ 73 (279)
+..-+=|||++.|.|+.+
T Consensus 306 F~vnSkllWFLaG~l~ty 323 (325)
T PF03213_consen 306 FDVNSKLLWFLAGILFTY 323 (325)
T ss_pred hcCCchHHHHHHHhHHhe
Confidence 566788999999977643
No 168
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=45.96 E-value=31 Score=24.05 Aligned_cols=46 Identities=24% Similarity=0.546 Sum_probs=30.5
Q ss_pred cccccccccccCceeEEeCCCC--cccHhhHHHHHhcCCCCcccccccCCC
Q 048433 216 TCTICLEQVKCGELVRSLPCLH--QFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H--~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
.|-.|-.++.....-. .=|.+ .||.+|....| ++.||.|-..+...
T Consensus 7 nCE~C~~dLp~~s~~A-~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEA-YICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcc-eEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 4667766666543111 11543 59999999876 78899998776554
No 169
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=42.73 E-value=15 Score=23.09 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=9.3
Q ss_pred cccccccccccCc
Q 048433 216 TCTICLEQVKCGE 228 (279)
Q Consensus 216 ~C~ICle~~~~~~ 228 (279)
+|+-|...|..++
T Consensus 4 ~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 4 TCPNCQTRFRVPD 16 (37)
T ss_pred ECCCCCceEEcCH
Confidence 6888888776554
No 170
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=42.44 E-value=8.3 Score=37.19 Aligned_cols=50 Identities=22% Similarity=0.503 Sum_probs=0.0
Q ss_pred ccccccccccccc-----C-----------ceeEEeCCCCcccHhhHHHHHhc---------CCCCcccccccCC
Q 048433 214 ELTCTICLEQVKC-----G-----------ELVRSLPCLHQFHANCIDPWLRQ---------RGTCPVCKFRMGS 263 (279)
Q Consensus 214 ~~~C~ICle~~~~-----~-----------~~v~~LpC~H~Fh~~CI~~WL~~---------~~~CP~CR~~i~~ 263 (279)
..+|++|+..-.- | -....-||||+--....+-|-+. +..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 5689999864210 0 12234589999888888889752 3459999887753
No 171
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.21 E-value=12 Score=28.61 Aligned_cols=13 Identities=38% Similarity=1.086 Sum_probs=11.3
Q ss_pred cccHhhHHHHHhc
Q 048433 238 QFHANCIDPWLRQ 250 (279)
Q Consensus 238 ~Fh~~CI~~WL~~ 250 (279)
-||..|+..|++.
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999974
No 172
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.21 E-value=27 Score=27.83 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=31.0
Q ss_pred cccccccccccCc----------eeE-EeCCCCcccHhhHHHHHhcCCCCcccc
Q 048433 216 TCTICLEQVKCGE----------LVR-SLPCLHQFHANCIDPWLRQRGTCPVCK 258 (279)
Q Consensus 216 ~C~ICle~~~~~~----------~v~-~LpC~H~Fh~~CI~~WL~~~~~CP~CR 258 (279)
.|--|+..|..+. ... --.|++.||.+|=.-+-..-..||-|.
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 5888888876431 011 233999999999877777777899995
No 173
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=42.04 E-value=27 Score=32.88 Aligned_cols=43 Identities=9% Similarity=-0.160 Sum_probs=30.3
Q ss_pred cccccccccccccCceeEEeCCCC-cccHhhHHHHHhcCCCCccccccc
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLH-QFHANCIDPWLRQRGTCPVCKFRM 261 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H-~Fh~~CI~~WL~~~~~CP~CR~~i 261 (279)
..+|-.|-+... .....+|+| .||.+|.. +.-..+||+|....
T Consensus 343 ~~~~~~~~~~~~---st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 343 SLKGTSAGFGLL---STIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hcccccccCcee---eeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 457888865543 233467999 48999987 56688899996543
No 174
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=42.00 E-value=71 Score=28.60 Aligned_cols=13 Identities=31% Similarity=1.009 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHH
Q 048433 60 NFLLWLVVGVFLI 72 (279)
Q Consensus 60 ~~l~~~~~~~~~~ 72 (279)
++.+|+++|+++-
T Consensus 51 ~~~~~~i~gi~~g 63 (224)
T PF13829_consen 51 SWWYWLIIGILLG 63 (224)
T ss_pred cHHHHHHHHHHHH
Confidence 7789999888653
No 175
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=40.75 E-value=9.9 Score=39.18 Aligned_cols=49 Identities=27% Similarity=0.571 Sum_probs=31.2
Q ss_pred ccccccccccccCc-----eeE--EeCCCCcccHhhHHHH--H--------hcCCCCcccccccCC
Q 048433 215 LTCTICLEQVKCGE-----LVR--SLPCLHQFHANCIDPW--L--------RQRGTCPVCKFRMGS 263 (279)
Q Consensus 215 ~~C~ICle~~~~~~-----~v~--~LpC~H~Fh~~CI~~W--L--------~~~~~CP~CR~~i~~ 263 (279)
.+|.||-|.=.+.+ .+. .-.|...||..|.... | .+-+.|-.|+.++.+
T Consensus 118 KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsK 183 (900)
T KOG0956|consen 118 KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSK 183 (900)
T ss_pred ceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHH
Confidence 48999988743322 111 1237778999998763 1 234569999987653
No 176
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=40.40 E-value=61 Score=30.99 Aligned_cols=48 Identities=17% Similarity=0.307 Sum_probs=33.7
Q ss_pred eeeec-cCcccccchhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHH
Q 048433 25 AVRIH-ATRPVNVNSLAFLVIVLLLFMILNSHQMSPNFLLWLVVGVFLIATSLRMY 79 (279)
Q Consensus 25 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 79 (279)
.|-|. ++-.|.++...++++++++|+++ .+++|++..++-+-..++-|
T Consensus 27 yv~i~~~~~~ie~s~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~p~~~~~~ 75 (409)
T TIGR00540 27 YVLIETANRIIEMSITGLAIFFIIALAII-------FAFEWGLRRFFRLGAHSRGW 75 (409)
T ss_pred eEEEEECCEEEEeeHHHHHHHHHHHHHHH-------HHHHHHHHHHHHccHHHHHH
Confidence 45666 88889999988888888888887 23566666655555444444
No 177
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=40.26 E-value=18 Score=32.36 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=21.0
Q ss_pred cccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 238 QFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 238 ~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
.-|..|-.+.-++...||+|+..-.+++
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccccCC
Confidence 3567777777778899999988765544
No 178
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=39.25 E-value=50 Score=26.55 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=15.5
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 048433 34 VNVNSLAFLVIVLLLFMILNSHQMSPNFLLWLVVG 68 (279)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 68 (279)
+|.+..+.+|.+++|+.+| +.++|-++.
T Consensus 4 ~~~t~~~~~i~flil~~ll-------~~~l~~pi~ 31 (140)
T PRK07353 4 FDATLPLMAVQFVLLTFIL-------NALFYKPVG 31 (140)
T ss_pred cchhHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 4555555556566666666 445665533
No 179
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=39.23 E-value=21 Score=24.03 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=23.6
Q ss_pred ccccccccccccCcee-EEeCCCCcccHhhHHHHHh
Q 048433 215 LTCTICLEQVKCGELV-RSLPCLHQFHANCIDPWLR 249 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v-~~LpC~H~Fh~~CI~~WL~ 249 (279)
..|.+|-..|..-..- .--.||+.||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 3699998877643211 1234999999999876544
No 180
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=38.93 E-value=36 Score=20.28 Aligned_cols=36 Identities=28% Similarity=0.638 Sum_probs=22.2
Q ss_pred ccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCccccccc
Q 048433 217 CTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRM 261 (279)
Q Consensus 217 C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i 261 (279)
|..|-+.+...+.. ...=+..||.+|. .|..|+..+
T Consensus 2 C~~C~~~i~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELV-LRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEE-EEeCCccccccCC--------CCcccCCcC
Confidence 77787777654222 2224677888774 477776655
No 182
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.47 E-value=19 Score=30.28 Aligned_cols=31 Identities=16% Similarity=0.482 Sum_probs=24.0
Q ss_pred CCcccHhhHHHHHhcCCCCcccccccCCCCCCCC
Q 048433 236 LHQFHANCIDPWLRQRGTCPVCKFRMGSGWQENR 269 (279)
Q Consensus 236 ~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~~~ 269 (279)
.+.||..|..+-+. .||.|..+|...+....
T Consensus 27 ~~~fC~kCG~~tI~---~Cp~C~~~IrG~y~v~g 57 (158)
T PF10083_consen 27 REKFCSKCGAKTIT---SCPNCSTPIRGDYHVEG 57 (158)
T ss_pred HHHHHHHhhHHHHH---HCcCCCCCCCCceecCC
Confidence 46699999887543 49999999998876543
No 183
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=38.34 E-value=28 Score=26.22 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=6.8
Q ss_pred CcccccchhHHHHHH
Q 048433 31 TRPVNVNSLAFLVIV 45 (279)
Q Consensus 31 ~~~~~~~~~~~~~~~ 45 (279)
.++-..|...|+.+.
T Consensus 17 ~~~~~l~pn~lMtIL 31 (85)
T PF10717_consen 17 NNLNGLNPNTLMTIL 31 (85)
T ss_pred ccccccChhHHHHHH
Confidence 344445554444433
No 184
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.20 E-value=22 Score=31.85 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=20.2
Q ss_pred ccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 239 FHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 239 Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
-|..|-...=++...||+|+..--+++
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrn 222 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRN 222 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCC
Confidence 466777777678889999998765544
No 185
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=36.97 E-value=54 Score=24.21 Aligned_cols=14 Identities=43% Similarity=0.904 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHH
Q 048433 39 LAFLVIVLLLFMIL 52 (279)
Q Consensus 39 ~~~~~~~~~~~~~~ 52 (279)
..||++-+++|+|+
T Consensus 3 ~~fl~~Pliif~if 16 (75)
T TIGR02976 3 IFFLAIPLIIFVIF 16 (75)
T ss_pred hHHHHHHHHHHHHH
Confidence 35677777778777
No 186
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=36.82 E-value=12 Score=25.34 Aligned_cols=12 Identities=33% Similarity=1.010 Sum_probs=6.1
Q ss_pred CCCcccccccCC
Q 048433 252 GTCPVCKFRMGS 263 (279)
Q Consensus 252 ~~CP~CR~~i~~ 263 (279)
+.||+|.+++.+
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 379999888764
No 187
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=36.05 E-value=82 Score=21.71 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=15.7
Q ss_pred ccccchhHHHHHHHHHHHHH
Q 048433 33 PVNVNSLAFLVIVLLLFMIL 52 (279)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~ 52 (279)
....|+.+|.|.=+++-||+
T Consensus 16 k~R~NsF~fViik~vismim 35 (54)
T PF04835_consen 16 KLRPNSFWFVIIKSVISMIM 35 (54)
T ss_pred hcCCchHHHHHHHHHHHHHH
Confidence 35679999988888877777
No 188
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=33.89 E-value=81 Score=30.07 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=34.1
Q ss_pred eeeec-cCcccccchhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHH
Q 048433 25 AVRIH-ATRPVNVNSLAFLVIVLLLFMILNSHQMSPNFLLWLVVGVFLIATSLRMY 79 (279)
Q Consensus 25 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 79 (279)
.|-|. ++-.|-++...++++++++|+++ .+++|++-.++-+-..++-|
T Consensus 27 yv~i~~~~~~ie~sl~~~~~~~~~~~~~~-------~~~~~~~~~~~~~p~~~~~~ 75 (398)
T PRK10747 27 YVLIQTDNYNIETSVTGLAIILILAMVVL-------FAIEWLLRRIFRTGARTRGW 75 (398)
T ss_pred eEEEEECCEEEEehHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcchhhhHH
Confidence 56666 88889998888888888888877 34667766666554544444
No 189
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.47 E-value=43 Score=25.90 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=29.5
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhcC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQR 251 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~ 251 (279)
+..|.||-..+..|+.....+ .-..|.+|+..-.+++
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~~k 42 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKRKK 42 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHhcC
Confidence 357999999999998877777 5568999998866543
No 190
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=32.88 E-value=27 Score=26.67 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=27.7
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
.|+-|...+.--+.+- |..|+..++.|..|+++++..
T Consensus 35 ~C~~C~~~L~~~~lIP------------i~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 35 HCPHCGHPLSWWDLIP------------ILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred cCcCCCCcCcccccch------------HHHHHHhCCCCcccCCCCChH
Confidence 6888877766444322 557999999999999998753
No 191
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=32.32 E-value=31 Score=26.38 Aligned_cols=39 Identities=21% Similarity=0.502 Sum_probs=28.4
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
..|-||-..+.+ =||.||..|.. +++.|.+|-..+.+..
T Consensus 45 ~~C~~CK~~v~q--------~g~~YCq~CAY----kkGiCamCGKki~dtk 83 (90)
T PF10235_consen 45 SKCKICKTKVHQ--------PGAKYCQTCAY----KKGICAMCGKKILDTK 83 (90)
T ss_pred cccccccccccc--------CCCccChhhhc----ccCcccccCCeecccc
Confidence 479999665442 36789999964 4889999988775543
No 192
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=32.10 E-value=29 Score=31.29 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=17.9
Q ss_pred ccccccccccccCceeEEeCCCCcc
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQF 239 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~F 239 (279)
..||||...+...+.....+.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 4799999998755443344568988
No 193
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=31.04 E-value=29 Score=23.49 Aligned_cols=22 Identities=36% Similarity=0.825 Sum_probs=11.7
Q ss_pred CCCcccHhhHHHHHhcCCCCccc
Q 048433 235 CLHQFHANCIDPWLRQRGTCPVC 257 (279)
Q Consensus 235 C~H~Fh~~CI~~WL~~~~~CP~C 257 (279)
|||.|-..=-.+ ......||.|
T Consensus 34 Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCeeEccHhhh-ccCCCCCCCC
Confidence 566554332212 2456679988
No 194
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=30.51 E-value=18 Score=36.39 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=48.5
Q ss_pred CCcccccccccccccCceeEEeC-CCCcccHhhHHHHHhcCCCCcccccccCCCCCCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQENRE 270 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~~~~ 270 (279)
+....|.+|+...........+. |.|.++..|+..|=.....|+.|+.++...+.+..+
T Consensus 258 ~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~~e~r~ 317 (553)
T KOG4430|consen 258 ENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTISKEARQ 317 (553)
T ss_pred hcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccccccccccc
Confidence 44567999998876555555555 789999999999988899999999999988887776
No 195
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.26 E-value=29 Score=21.11 Aligned_cols=10 Identities=40% Similarity=0.849 Sum_probs=6.9
Q ss_pred cCCCCccccc
Q 048433 250 QRGTCPVCKF 259 (279)
Q Consensus 250 ~~~~CP~CR~ 259 (279)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3457999965
No 196
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=30.14 E-value=10 Score=35.12 Aligned_cols=38 Identities=29% Similarity=0.631 Sum_probs=29.1
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG 252 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~ 252 (279)
..|.+|++.+..+.......|.-.||..|+..|++...
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 38999999998644444555666999999999987643
No 197
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=30.05 E-value=56 Score=21.68 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=21.7
Q ss_pred ccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 217 CTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 217 C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
|.-|-..+...+.+ ...-+..||.+|. .|-.|+..+..+
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPECF--------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTTS--------BETTTTCBTTTS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEcccc--------ccCCCCCccCCC
Confidence 55566665543322 1235666776663 477777666554
No 198
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.74 E-value=23 Score=36.53 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=35.5
Q ss_pred ccccccccccc-cCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCCCCCCCCCCCCCC
Q 048433 215 LTCTICLEQVK-CGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQENRESESDSSDM 278 (279)
Q Consensus 215 ~~C~ICle~~~-~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~~~~~~~~~~~~ 278 (279)
.+|-+|...=. +.+-.+.+.|+-.||..| |+--.+.||+|--...-.++-..++.++-.||
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~~~~~~s~~a~~~s~~~~~y~ 716 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCGPDAAISYTAAVASILVVGYM 716 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccCchhhhhhhhhhhhhhhhhcC
Confidence 47888965433 222334456999898888 55568889999444333333333333333344
No 199
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=29.36 E-value=28 Score=21.71 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=8.9
Q ss_pred cccccccccccCc
Q 048433 216 TCTICLEQVKCGE 228 (279)
Q Consensus 216 ~C~ICle~~~~~~ 228 (279)
+|+=|...|..++
T Consensus 4 ~Cp~C~~~y~i~d 16 (36)
T PF13717_consen 4 TCPNCQAKYEIDD 16 (36)
T ss_pred ECCCCCCEEeCCH
Confidence 5888877776543
No 200
>PF12773 DZR: Double zinc ribbon
Probab=29.02 E-value=39 Score=22.17 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=14.5
Q ss_pred ccHhhHHHHH--h-cCCCCcccccccCCCC
Q 048433 239 FHANCIDPWL--R-QRGTCPVCKFRMGSGW 265 (279)
Q Consensus 239 Fh~~CI~~WL--~-~~~~CP~CR~~i~~~~ 265 (279)
||..|-.+.. . ....||.|...+...+
T Consensus 14 fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~ 43 (50)
T PF12773_consen 14 FCPHCGTPLPPPDQSKKICPNCGAENPPNA 43 (50)
T ss_pred CChhhcCChhhccCCCCCCcCCcCCCcCCc
Confidence 5555554443 1 2345888877655443
No 201
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.60 E-value=30 Score=32.45 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=27.8
Q ss_pred CcccccccccccccCceeEEe--CC--CCcccHhhHHHHHhcCCCCccccc
Q 048433 213 DELTCTICLEQVKCGELVRSL--PC--LHQFHANCIDPWLRQRGTCPVCKF 259 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L--pC--~H~Fh~~CI~~WL~~~~~CP~CR~ 259 (279)
....||||-..-... +..+ .= .|.+|.-|-..|-..+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 346899996542211 1111 11 344677788889888888999964
No 202
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=28.44 E-value=29 Score=35.73 Aligned_cols=42 Identities=26% Similarity=0.530 Sum_probs=24.3
Q ss_pred ccccccccccccCceeEEeCCCCcccH--hhHHH-HHhc----CC--CCcccccccCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHA--NCIDP-WLRQ----RG--TCPVCKFRMGS 263 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~--~CI~~-WL~~----~~--~CP~CR~~i~~ 263 (279)
+.|+|+...+. +||.+..|. .|.+. |+.+ +. .||+|.....-
T Consensus 307 L~CPl~~~Rm~-------~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 307 LNCPLSKMRMS-------LPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred ecCCcccceee-------cCCcccccccceecchhhhHHhccCCCeeeCccCCccccc
Confidence 45777654433 566555554 67665 4432 22 39999776553
No 203
>PHA02849 putative transmembrane protein; Provisional
Probab=28.04 E-value=1.1e+02 Score=22.74 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCCCChhHHHHH
Q 048433 44 IVLLLFMILNSHQMSPNFLLWL 65 (279)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~~ 65 (279)
+++++|++|+-..|+....+|-
T Consensus 27 I~i~~flLlyLvkws~v~d~~n 48 (82)
T PHA02849 27 ISFLAFMLLYLIKWSYVINFLN 48 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444333333
No 204
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=27.94 E-value=1e+02 Score=22.15 Aligned_cols=13 Identities=15% Similarity=0.536 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 048433 40 AFLVIVLLLFMIL 52 (279)
Q Consensus 40 ~~~~~~~~~~~~~ 52 (279)
+.++.+.++|.+|
T Consensus 7 i~i~Gm~iVF~~L 19 (79)
T PF04277_consen 7 IMIIGMGIVFLVL 19 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 4455666677777
No 205
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=27.79 E-value=98 Score=25.61 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=9.3
Q ss_pred cccchhHHHHHHHHHHHHH
Q 048433 34 VNVNSLAFLVIVLLLFMIL 52 (279)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ 52 (279)
.|.+..+.++.+++|+.+|
T Consensus 21 ~n~t~~~~~inFliL~~lL 39 (156)
T CHL00118 21 FNATLPLMALQFLLLMVLL 39 (156)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 4544444455555555555
No 206
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=27.62 E-value=65 Score=20.45 Aligned_cols=15 Identities=33% Similarity=0.702 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHH
Q 048433 38 SLAFLVIVLLLFMIL 52 (279)
Q Consensus 38 ~~~~~~~~~~~~~~~ 52 (279)
.++|-++++++|.+|
T Consensus 16 Wi~F~l~mi~vFi~l 30 (38)
T PF09125_consen 16 WIAFALAMILVFIAL 30 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356667777777777
No 207
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=27.30 E-value=64 Score=19.28 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=13.5
Q ss_pred CcccccchhHHHHHHHHHHHHHh
Q 048433 31 TRPVNVNSLAFLVIVLLLFMILN 53 (279)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~ 53 (279)
.|..--|..+.||+|++.....-
T Consensus 5 trel~lnftvvlitvilmwllvr 27 (31)
T PF05366_consen 5 TRELFLNFTVVLITVILMWLLVR 27 (31)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Confidence 34555566677777666555443
No 208
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.97 E-value=20 Score=35.10 Aligned_cols=38 Identities=16% Similarity=0.353 Sum_probs=27.0
Q ss_pred cccccccccccccCce---eEE--eCCCCcccHhhHHHHHhcC
Q 048433 214 ELTCTICLEQVKCGEL---VRS--LPCLHQFHANCIDPWLRQR 251 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~---v~~--LpC~H~Fh~~CI~~WL~~~ 251 (279)
...||.|...++.... ... .+|+|.||..|+..|-...
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h~ 268 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDHG 268 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeeccccccc
Confidence 3459999888775541 112 2499999999988887653
No 209
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=39 Score=34.93 Aligned_cols=44 Identities=27% Similarity=0.605 Sum_probs=31.7
Q ss_pred cccccccccccCceeEEeCCCC-cccHhhHHHHHh--c----CCCCcccccccC
Q 048433 216 TCTICLEQVKCGELVRSLPCLH-QFHANCIDPWLR--Q----RGTCPVCKFRMG 262 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H-~Fh~~CI~~WL~--~----~~~CP~CR~~i~ 262 (279)
.|.||-.... .+..-.||| .-|..|..+..- . .+.||+||..+.
T Consensus 2 ~c~ic~~s~~---~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPD---FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCcc---ccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 4999966544 344455999 899999988753 2 445899998554
No 210
>PF14002 YniB: YniB-like protein
Probab=26.57 E-value=2.7e+02 Score=23.69 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH--HHHHhHHHhcCCCc
Q 048433 66 VVGVFLIATSLRMYATCQQLQA--QARAHAAAASGLLS 101 (279)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~lq~--~~~~~~~~~~g~l~ 101 (279)
++|..+-+++.||+++...+.. +.|-....+.|..+
T Consensus 85 FvGlAL~aSG~rm~rqvk~ire~IEdqlIlE~akG~~g 122 (166)
T PF14002_consen 85 FVGLALQASGARMSRQVKFIREGIEDQLILEQAKGSEG 122 (166)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHhcCCcc
Confidence 4566778999999999887765 55666666777665
No 211
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=26.22 E-value=1.1e+02 Score=21.54 Aligned_cols=38 Identities=21% Similarity=0.509 Sum_probs=23.9
Q ss_pred eccCcccccchhHHHHHHHHHHHHHhcCCC-ChhHHHHHH
Q 048433 28 IHATRPVNVNSLAFLVIVLLLFMILNSHQM-SPNFLLWLV 66 (279)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 66 (279)
+-++|.-| -...||+..+.+|-||.+... -++|+.|.+
T Consensus 12 v~~~~~r~-e~itFl~la~~l~PilsV~~VG~yGFiVWM~ 50 (62)
T COG4459 12 VKPSEKRS-EWITFLFLAFGLFPILSVAFVGGYGFIVWMF 50 (62)
T ss_pred CCcchhhh-HHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 33444434 567888999999999866443 245555543
No 212
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.20 E-value=66 Score=23.69 Aligned_cols=45 Identities=22% Similarity=0.467 Sum_probs=27.7
Q ss_pred ccccccccccCceeEEeCC--CCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 217 CTICLEQVKCGELVRSLPC--LHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 217 C~ICle~~~~~~~v~~LpC--~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
|--|-.++..+..-. +-| .|.||.+|...- -+..||.|-..+...
T Consensus 8 CECCDrDLpp~s~dA-~ICtfEcTFCadCae~~--l~g~CPnCGGelv~R 54 (84)
T COG3813 8 CECCDRDLPPDSTDA-RICTFECTFCADCAENR--LHGLCPNCGGELVAR 54 (84)
T ss_pred CcccCCCCCCCCCce-eEEEEeeehhHhHHHHh--hcCcCCCCCchhhcC
Confidence 555655554433211 114 477999998863 478899997665543
No 213
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=26.14 E-value=75 Score=24.85 Aligned_cols=24 Identities=21% Similarity=0.549 Sum_probs=18.3
Q ss_pred CCcccHhhHHHHHhc---------CCCCccccc
Q 048433 236 LHQFHANCIDPWLRQ---------RGTCPVCKF 259 (279)
Q Consensus 236 ~H~Fh~~CI~~WL~~---------~~~CP~CR~ 259 (279)
.=.||..|+..++.. .-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 567999999988742 235999976
No 214
>PF11125 DUF2830: Protein of unknown function (DUF2830); InterPro: IPR022599 This entry represents putative lysis proteins from Bacteriophage MS2 and Bacteriophage BZ13. The bacteriophage MS2 lysin protein COM1L5 from SWISSPROT was identified as an overlapping cistron in the bacteriophage MS2 RNA [].
Probab=25.99 E-value=2.1e+02 Score=19.29 Aligned_cols=33 Identities=30% Similarity=0.218 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhH
Q 048433 37 NSLAFLVIVLLLFMILNSHQMSPNFLLWLVVGVFLIATSLR 77 (279)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 77 (279)
+-+|+|.+++.=|. ..|+.|+.-.++..+++++
T Consensus 18 YV~I~LAI~LS~FT--------n~~~~~l~~llI~iv~TL~ 50 (54)
T PF11125_consen 18 YVLIALAIFLSKFT--------NQLLHSLWGLLIRIVTTLQ 50 (54)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 33445544444443 3477888777666666553
No 215
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=25.63 E-value=49 Score=33.11 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=22.1
Q ss_pred CCcccccccccccccC-ceeEEeCCCCcccHhhHH
Q 048433 212 EDELTCTICLEQVKCG-ELVRSLPCLHQFHANCID 245 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~-~~v~~LpC~H~Fh~~CI~ 245 (279)
++...|.-|...|..= .....-.||-+||..|-.
T Consensus 899 ~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~ 933 (990)
T KOG1819|consen 899 EDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSC 933 (990)
T ss_pred CcchhhhhccCcHHHHHHhhhhcccCceeeccccc
Confidence 3456788998877521 112234699999999853
No 216
>COG5081 Predicted membrane protein [Function unknown]
Probab=25.47 E-value=1.3e+02 Score=25.28 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHH
Q 048433 45 VLLLFMILNSHQMSPNFLLWLVVGVFLIATSLRM 78 (279)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 78 (279)
=+++|.+-+-.----.+|||+-.-+.+++..+..
T Consensus 126 PiilFl~sn~y~~~n~~lF~~ni~~lf~v~iPKl 159 (180)
T COG5081 126 PIILFLASNHYVHYNIFLFLINITSLFLVVIPKL 159 (180)
T ss_pred HHHHHHHHhhheeehhhhHHHHHHHHHhhhcccc
Confidence 3556666544334455777776655555554443
No 217
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=25.33 E-value=30 Score=36.59 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=30.7
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHH-h-----cCCCCcccccccCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWL-R-----QRGTCPVCKFRMGS 263 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL-~-----~~~~CP~CR~~i~~ 263 (279)
...|-.|...... ...+.-.|+|.+|..|++.|. + ....|+.|+..-..
T Consensus 229 ~~mC~~C~~tlfn-~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~ 283 (889)
T KOG1356|consen 229 REMCDRCETTLFN-IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNK 283 (889)
T ss_pred chhhhhhcccccc-eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCC
Confidence 4568888665331 122233499999999999995 1 13347777655443
No 218
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.32 E-value=17 Score=34.01 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=27.7
Q ss_pred cccccccccccccCceeEEe--CC--CCcccHhhHHHHHhcCCCCcccccc
Q 048433 214 ELTCTICLEQVKCGELVRSL--PC--LHQFHANCIDPWLRQRGTCPVCKFR 260 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~L--pC--~H~Fh~~CI~~WL~~~~~CP~CR~~ 260 (279)
...||||-..-..+. ++.. .= .|.+|.-|-..|-..+..||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 348999966422110 0000 11 2446677888998888889999653
No 219
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=25.20 E-value=1.8e+02 Score=19.29 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=10.5
Q ss_pred HHhhHHHHHHHHHHH
Q 048433 73 ATSLRMYATCQQLQA 87 (279)
Q Consensus 73 ~~~~~~~~~~~~lq~ 87 (279)
..++-+|...+|.+.
T Consensus 20 ~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 20 WIGLSIYQKIKQIRG 34 (49)
T ss_pred HHHHHHHHHHHHHHh
Confidence 345778888887765
No 220
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=24.79 E-value=47 Score=26.31 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=26.9
Q ss_pred ccccccccccccc--CceeEEeCCCCcccHhhHHHHHhcCC--CCccccc
Q 048433 214 ELTCTICLEQVKC--GELVRSLPCLHQFHANCIDPWLRQRG--TCPVCKF 259 (279)
Q Consensus 214 ~~~C~ICle~~~~--~~~v~~LpC~H~Fh~~CI~~WL~~~~--~CP~CR~ 259 (279)
+..|.+|...|.- +.......|+|.+|..|-.. ..... .|-+|..
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 4589999887642 22344456999999999654 11122 3888854
No 221
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=24.68 E-value=31 Score=32.84 Aligned_cols=48 Identities=29% Similarity=0.625 Sum_probs=24.9
Q ss_pred CCcccccccccccccCceeEEeCC---CCcc--------cHhhHHHHH-----hcCCCCcccccc
Q 048433 212 EDELTCTICLEQVKCGELVRSLPC---LHQF--------HANCIDPWL-----RQRGTCPVCKFR 260 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC---~H~F--------h~~CI~~WL-----~~~~~CP~CR~~ 260 (279)
+.++-|++|-+.+. |=.-..|.| .-.| |..|+..-- .+++.||.||+.
T Consensus 13 dl~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 13 DLGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred ccccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 34567999977654 222233443 2222 233433211 135569999974
No 222
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=24.61 E-value=1.2e+02 Score=22.90 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=13.6
Q ss_pred eec-cCcccccchhHHHHHHHHHHHHH
Q 048433 27 RIH-ATRPVNVNSLAFLVIVLLLFMIL 52 (279)
Q Consensus 27 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ 52 (279)
|+- |.-|+|...+.+++.|+++..+.
T Consensus 23 r~~iPc~p~~lKrlliivvVvVlvVvv 49 (93)
T PF08999_consen 23 RFGIPCCPVNLKRLLIIVVVVVLVVVV 49 (93)
T ss_dssp ----SSS-SHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccccccceEEEEEEeeehhHHH
Confidence 444 77788877766655555554443
No 223
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=24.43 E-value=54 Score=23.17 Aligned_cols=15 Identities=33% Similarity=0.899 Sum_probs=8.6
Q ss_pred CCCCcccccccCCCC
Q 048433 251 RGTCPVCKFRMGSGW 265 (279)
Q Consensus 251 ~~~CP~CR~~i~~~~ 265 (279)
+..||+|+..+.-+.
T Consensus 2 k~~CPlCkt~~n~gs 16 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGS 16 (61)
T ss_pred CccCCcccchhhcCC
Confidence 345777776654333
No 224
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=24.24 E-value=1.4e+02 Score=30.69 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHHHH
Q 048433 37 NSLAFLVIVLLLFMILNSHQMSPNFLLWLVVGVFLIATSLRMYAT 81 (279)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (279)
..+.+++.+++.+.++ ..++++++||.++...+.+..+++...
T Consensus 111 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (608)
T TIGR00764 111 LLLFMIGFIVLSEYFL--KNLPPNYLLAAVIAAALILLIFGFFIP 153 (608)
T ss_pred HHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444444443 468999999998887776666665433
No 225
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=24.09 E-value=3e+02 Score=20.31 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=20.3
Q ss_pred ChhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 048433 58 SPNFLLWLVVGVFLIATSLRMYATCQQLQ 86 (279)
Q Consensus 58 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lq 86 (279)
|..|+.-.++++.+.++..+.....++.|
T Consensus 45 niHfivL~~l~~~Lw~Sv~WFi~EL~~~~ 73 (75)
T PF08636_consen 45 NIHFIVLSFLALGLWASVNWFIAELKKAQ 73 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777777777666666666554
No 226
>COG4420 Predicted membrane protein [Function unknown]
Probab=23.90 E-value=2.6e+02 Score=24.39 Aligned_cols=9 Identities=56% Similarity=1.457 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 048433 62 LLWLVVGVF 70 (279)
Q Consensus 62 l~~~~~~~~ 70 (279)
++|+++.++
T Consensus 69 l~Wi~lNl~ 77 (191)
T COG4420 69 LLWIVLNLF 77 (191)
T ss_pred HHHHHHHHh
Confidence 344444443
No 227
>PF04819 DUF716: Family of unknown function (DUF716) ; InterPro: IPR006904 These sequences are a family of uncharacterised hypothetical proteins restricted to eukaryotes. Q9SLW7 from SWISSPROT represents a sequence from Nicotiana tabacum (Common tobacco)which is up regulated in response to TMV infection.
Probab=23.69 E-value=1.3e+02 Score=24.65 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=36.8
Q ss_pred cccchhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Q 048433 34 VNVNSLAFLVIVLLLFMILNSHQMSPNFLLWLVVGVFLIATSLRMYATCQ 83 (279)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (279)
.....+..+.+.+.....+.-.-++-++++|++-+..++..+.+.+...-
T Consensus 33 ~~~H~LL~~~i~~~~~~~~le~~~p~~~~~~~~r~~~~~lqGtWf~Q~g~ 82 (137)
T PF04819_consen 33 GRVHSLLLLPIFLCALSTLLEAWFPNSFLAELLRSSSILLQGTWFWQIGF 82 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566665555555666899999999999999999988886655
No 228
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=23.54 E-value=72 Score=24.48 Aligned_cols=32 Identities=28% Similarity=0.682 Sum_probs=21.1
Q ss_pred cccccccccccccCceeEEeC--CCCcccHhhHHHH
Q 048433 214 ELTCTICLEQVKCGELVRSLP--CLHQFHANCIDPW 247 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~Lp--C~H~Fh~~CI~~W 247 (279)
...|.||... .|..+.--. |...||..|....
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 4579999776 333222222 7778999998663
No 229
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=23.52 E-value=31 Score=28.95 Aligned_cols=26 Identities=27% Similarity=0.593 Sum_probs=16.0
Q ss_pred cccccCCC-CCCcCCCeeeeccCcccc
Q 048433 10 GDIESGFP-GFIAEQPAVRIHATRPVN 35 (279)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 35 (279)
+++-+|++ .|-|+.+.|+||+|...-
T Consensus 44 a~~~~~lpW~F~P~q~~v~V~pGe~~~ 70 (152)
T PF04442_consen 44 ANVNPGLPWEFKPEQRSVKVHPGETAL 70 (152)
T ss_dssp EEE-TTS-EEEE-S-SEEEEETT--EE
T ss_pred eecCCCCceEEEeeeeeEEeCCCCEEE
Confidence 35567777 899999999999997653
No 230
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.36 E-value=1.5e+02 Score=25.87 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=15.6
Q ss_pred eeeeccCcccccchhHHHHHHHHHHHH
Q 048433 25 AVRIHATRPVNVNSLAFLVIVLLLFMI 51 (279)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (279)
..|+|+.-...+=.++++++.++++++
T Consensus 34 YtRLHAATKa~TLGv~LILlgv~l~~~ 60 (197)
T PRK12585 34 YTRTHAAGISNTFGVSLLLFATVGYFF 60 (197)
T ss_pred HHHhhccccchhhhHHHHHHHHHHHHH
Confidence 469996655566665555544444333
No 231
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=23.27 E-value=89 Score=24.22 Aligned_cols=29 Identities=24% Similarity=0.585 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 048433 42 LVIVLLLFMILNSHQMSPNFLLWLVVGVFLIAT 74 (279)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (279)
|++++++|+|||..-++ -|+.+++.+.+.
T Consensus 26 ll~~~il~~iLYi~Gv~----~~ici~~~~~~~ 54 (96)
T PF13571_consen 26 LLGLFILFVILYIAGVN----QWICIGFGVVSG 54 (96)
T ss_pred HHHHHHHHHHHHHhccc----hhhhHHHHHHHh
Confidence 56677888888764433 344444433333
No 232
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.15 E-value=26 Score=23.79 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=14.3
Q ss_pred eEEe-CCCCcccHhhHHHH
Q 048433 230 VRSL-PCLHQFHANCIDPW 247 (279)
Q Consensus 230 v~~L-pC~H~Fh~~CI~~W 247 (279)
...- .|+|.||..|...|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3445 48999999998888
No 233
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=22.79 E-value=1.3e+02 Score=24.16 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHhhH
Q 048433 60 NFLLWLVVGVFLIATSLR 77 (279)
Q Consensus 60 ~~l~~~~~~~~~~~~~~~ 77 (279)
+|++|-++|+.++++.+.
T Consensus 18 GFi~fWPlGla~Lay~iw 35 (115)
T PF11014_consen 18 GFIVFWPLGLALLAYMIW 35 (115)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455567778777777553
No 234
>PHA00027 lys lysis protein
Probab=22.41 E-value=2.7e+02 Score=19.19 Aligned_cols=21 Identities=19% Similarity=0.274 Sum_probs=13.8
Q ss_pred CChhHHHHHHHHHHHHHHhhH
Q 048433 57 MSPNFLLWLVVGVFLIATSLR 77 (279)
Q Consensus 57 ~~~~~l~~~~~~~~~~~~~~~ 77 (279)
+...|+.|+.-.++...+++.
T Consensus 34 FTn~~l~sil~~lI~~~~TL~ 54 (58)
T PHA00027 34 FTNIFLHSILEALILTLQTLM 54 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344578888877777666553
No 235
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=22.34 E-value=63 Score=18.99 Aligned_cols=29 Identities=24% Similarity=0.615 Sum_probs=9.3
Q ss_pred cccccccccccCceeEEeCCCCcccHhhH
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCI 244 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI 244 (279)
.|.+|-+....+-.-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 47788776654222333457777888885
No 236
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=22.28 E-value=1.6e+02 Score=29.93 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=39.7
Q ss_pred eccCccc-cccCCCCCCcCCCe-----eeeccCcccccchhHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhhHH
Q 048433 5 FRGTRGD-IESGFPGFIAEQPA-----VRIHATRPVNVNSLAFLVIVLLLFMILNSHQMSPNFLLWLVVGVFLIATSLRM 78 (279)
Q Consensus 5 ~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 78 (279)
+-|+|-| |+=++.+|.|.--- ++...+--.=+++.||++++.++.+-+... +||+++.++.++.+.++...+
T Consensus 482 ~DG~rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~i~lva~~m~~is~l~~--~~~l~~~l~w~~~~~~s~~~i 559 (579)
T KOG1889|consen 482 ADGTRQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPIIFLVALSMFIISLLFS--TPNLLYRLFWFAIMVVSIAVI 559 (579)
T ss_pred cCccccchHHHhcCCcccccccccCCCcccccCceeehhhHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHhh
Confidence 3467755 44455555553211 122222233356667777766655544333 699888887776666664444
Q ss_pred H
Q 048433 79 Y 79 (279)
Q Consensus 79 ~ 79 (279)
+
T Consensus 560 ~ 560 (579)
T KOG1889|consen 560 L 560 (579)
T ss_pred e
Confidence 4
No 237
>PF10857 DUF2701: Protein of unknown function (DUF2701); InterPro: IPR022586 This entry represents viral proteins with unknown function. The entry contains ORF C51 from Swinepox virus (strain Kasza).
Probab=22.25 E-value=1.1e+02 Score=21.72 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 048433 41 FLVIVLLLFMILNSHQMSPNFLLWLVVG 68 (279)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 68 (279)
++++++++|++|+-..||....+|--+.
T Consensus 5 ~vvi~i~~~lllyLvkws~v~~~~n~iK 32 (63)
T PF10857_consen 5 VVVIVILAYLLLYLVKWSYVKDACNDIK 32 (63)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899987766666666665444
No 238
>PF13239 2TM: 2TM domain
Probab=22.14 E-value=2.4e+02 Score=20.56 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhHHH
Q 048433 66 VVGVFLIATSLRMY 79 (279)
Q Consensus 66 ~~~~~~~~~~~~~~ 79 (279)
..|+.+..+++..|
T Consensus 49 ~Wgi~L~~h~~~vf 62 (83)
T PF13239_consen 49 GWGIGLAIHALKVF 62 (83)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555566655554
No 239
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=21.94 E-value=48 Score=30.23 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=30.7
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhcCC--CCccc
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG--TCPVC 257 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~--~CP~C 257 (279)
+..|||=...+.. .++.-.|||+|=.+-|...+.... .||+=
T Consensus 176 s~rdPis~~~I~n--PviSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 176 SNRDPISKKPIVN--PVISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred cccCchhhhhhhc--hhhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 3579987666663 345566999999999999887633 47764
No 240
>PHA01815 hypothetical protein
Probab=21.76 E-value=2.5e+02 Score=18.79 Aligned_cols=11 Identities=45% Similarity=0.884 Sum_probs=6.1
Q ss_pred hhHHHHHHHHH
Q 048433 38 SLAFLVIVLLL 48 (279)
Q Consensus 38 ~~~~~~~~~~~ 48 (279)
.++|||+.+++
T Consensus 12 llaflitliil 22 (55)
T PHA01815 12 LLAFLITLIIL 22 (55)
T ss_pred HHHHHHHHHHH
Confidence 35566665544
No 241
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=21.56 E-value=44 Score=23.55 Aligned_cols=16 Identities=44% Similarity=0.802 Sum_probs=11.9
Q ss_pred CCCCcccccccCCCCC
Q 048433 251 RGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 251 ~~~CP~CR~~i~~~~~ 266 (279)
...||+|+.+...+..
T Consensus 39 ~p~CPlC~s~M~~~~r 54 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGTR 54 (59)
T ss_pred CccCCCcCCcccccee
Confidence 4569999988776543
No 242
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=21.44 E-value=1.3e+02 Score=24.47 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=8.4
Q ss_pred ccchhHHHHHHHHHHHHH
Q 048433 35 NVNSLAFLVIVLLLFMIL 52 (279)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ 52 (279)
|....+.+|..++|+.||
T Consensus 4 ~~~~~~~~i~Flil~~il 21 (156)
T PRK05759 4 NGTLIGQLIAFLILVWFI 21 (156)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444444444444455444
No 243
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=20.56 E-value=55 Score=33.72 Aligned_cols=28 Identities=25% Similarity=0.866 Sum_probs=21.3
Q ss_pred CCCCcccHhhHHHHHhc-----CCCCccccccc
Q 048433 234 PCLHQFHANCIDPWLRQ-----RGTCPVCKFRM 261 (279)
Q Consensus 234 pC~H~Fh~~CI~~WL~~-----~~~CP~CR~~i 261 (279)
.|+-.||..|+.-|+.. ...||-||.-.
T Consensus 40 ~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 40 DCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 38899999999999863 23588887643
Done!