Query 048433
Match_columns 279
No_of_seqs 263 out of 2039
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 9.3E-17 3.2E-21 122.0 8.2 80 151-264 11-90 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.7E-16 5.8E-21 115.9 3.9 53 212-264 21-73 (75)
3 2ep4_A Ring finger protein 24; 99.6 2.2E-15 7.6E-20 109.5 6.7 59 211-269 12-70 (74)
4 2ect_A Ring finger protein 126 99.6 2.3E-15 7.9E-20 110.5 6.8 61 212-272 13-73 (78)
5 2kiz_A E3 ubiquitin-protein li 99.6 5E-15 1.7E-19 106.2 6.8 54 212-265 12-65 (69)
6 1iym_A EL5; ring-H2 finger, ub 99.5 4.6E-15 1.6E-19 101.6 4.1 51 212-262 3-54 (55)
7 2ea6_A Ring finger protein 4; 99.5 3.3E-14 1.1E-18 101.3 4.6 52 212-263 13-68 (69)
8 2ecm_A Ring finger and CHY zin 99.5 5.8E-14 2E-18 95.9 5.0 50 213-262 4-54 (55)
9 1chc_A Equine herpes virus-1 r 99.5 5.7E-14 1.9E-18 100.2 5.0 52 213-266 4-55 (68)
10 3ng2_A RNF4, snurf, ring finge 99.4 4.7E-14 1.6E-18 101.3 4.5 55 212-266 8-66 (71)
11 2ecl_A Ring-box protein 2; RNF 99.4 7E-14 2.4E-18 103.9 5.1 51 213-263 14-76 (81)
12 1v87_A Deltex protein 2; ring- 99.4 1.1E-13 3.6E-18 108.8 6.1 58 214-271 25-102 (114)
13 2djb_A Polycomb group ring fin 99.4 2.5E-13 8.5E-18 98.2 6.3 56 211-268 12-67 (72)
14 2d8t_A Dactylidin, ring finger 99.4 1.1E-13 3.6E-18 99.9 4.0 51 212-265 13-63 (71)
15 2xeu_A Ring finger protein 4; 99.4 1.6E-13 5.6E-18 96.2 3.9 53 213-265 2-58 (64)
16 2ecn_A Ring finger protein 141 99.4 2.2E-13 7.6E-18 97.7 3.7 50 212-265 13-62 (70)
17 2csy_A Zinc finger protein 183 99.4 4.9E-13 1.7E-17 98.8 5.3 49 212-263 13-61 (81)
18 2ct2_A Tripartite motif protei 99.4 8.6E-13 2.9E-17 98.4 6.2 55 211-265 12-70 (88)
19 3dpl_R Ring-box protein 1; ubi 99.3 5.5E-13 1.9E-17 104.2 5.0 50 213-262 36-100 (106)
20 2yur_A Retinoblastoma-binding 99.3 1.2E-12 4.1E-17 95.2 6.0 52 211-265 12-66 (74)
21 2ecy_A TNF receptor-associated 99.3 9.8E-13 3.3E-17 93.4 4.6 52 211-265 12-64 (66)
22 2ysl_A Tripartite motif-contai 99.3 1.7E-12 5.9E-17 93.6 5.6 52 211-265 17-71 (73)
23 4ayc_A E3 ubiquitin-protein li 99.3 4.8E-13 1.6E-17 108.9 3.0 49 213-264 52-100 (138)
24 2d8s_A Cellular modulator of i 99.3 2.4E-12 8.4E-17 95.6 5.9 54 212-266 13-73 (80)
25 1t1h_A Gspef-atpub14, armadill 99.3 4.5E-12 1.5E-16 92.7 5.4 51 212-265 6-57 (78)
26 2ecw_A Tripartite motif-contai 99.2 5.8E-12 2E-16 92.9 5.2 52 211-265 16-73 (85)
27 2ecv_A Tripartite motif-contai 99.2 6.2E-12 2.1E-16 92.8 5.2 52 211-265 16-73 (85)
28 2egp_A Tripartite motif-contai 99.2 1.5E-12 5.1E-17 95.2 1.6 51 211-264 9-66 (79)
29 3lrq_A E3 ubiquitin-protein li 99.2 3.3E-12 1.1E-16 98.3 3.3 50 212-264 20-71 (100)
30 4ap4_A E3 ubiquitin ligase RNF 99.2 4.5E-12 1.5E-16 101.1 4.2 55 213-267 6-64 (133)
31 2ysj_A Tripartite motif-contai 99.2 1E-11 3.5E-16 87.2 5.3 45 210-257 16-63 (63)
32 3ztg_A E3 ubiquitin-protein li 99.2 1.1E-11 3.6E-16 93.6 5.4 49 211-262 10-61 (92)
33 4a0k_B E3 ubiquitin-protein li 99.2 1.4E-12 4.7E-17 103.7 0.5 50 213-262 47-111 (117)
34 1g25_A CDK-activating kinase a 99.2 1E-11 3.5E-16 87.8 4.3 53 213-265 2-57 (65)
35 2ckl_A Polycomb group ring fin 99.2 1E-11 3.5E-16 96.6 4.5 50 212-264 13-63 (108)
36 3fl2_A E3 ubiquitin-protein li 99.2 1.1E-11 3.7E-16 98.8 4.7 48 213-263 51-99 (124)
37 2y43_A E3 ubiquitin-protein li 99.2 7.5E-12 2.6E-16 95.8 3.6 48 213-263 21-69 (99)
38 2ecj_A Tripartite motif-contai 99.2 1E-11 3.4E-16 85.4 3.7 44 211-257 12-58 (58)
39 2ct0_A Non-SMC element 1 homol 99.2 3.2E-11 1.1E-15 88.2 5.7 54 210-265 11-66 (74)
40 1e4u_A Transcriptional repress 99.1 4E-11 1.4E-15 88.5 5.5 58 211-269 8-68 (78)
41 2ckl_B Ubiquitin ligase protei 99.1 1.7E-11 5.7E-16 102.5 3.3 50 212-263 52-102 (165)
42 3l11_A E3 ubiquitin-protein li 99.1 7.8E-12 2.7E-16 98.3 0.4 49 212-263 13-62 (115)
43 2kr4_A Ubiquitin conjugation f 99.1 7.3E-11 2.5E-15 88.3 5.4 50 212-264 12-61 (85)
44 1jm7_A BRCA1, breast cancer ty 99.1 2.8E-11 9.6E-16 94.2 3.2 51 213-266 20-73 (112)
45 1z6u_A NP95-like ring finger p 99.1 3.8E-11 1.3E-15 99.2 3.9 49 213-264 77-126 (150)
46 3knv_A TNF receptor-associated 99.1 2.1E-11 7.1E-16 99.9 1.7 50 211-263 28-78 (141)
47 4ap4_A E3 ubiquitin ligase RNF 99.1 5.3E-11 1.8E-15 94.8 3.7 53 212-264 70-126 (133)
48 3hct_A TNF receptor-associated 99.1 6.6E-11 2.3E-15 93.6 4.0 51 211-264 15-66 (118)
49 1wgm_A Ubiquitin conjugation f 99.0 1.7E-10 5.7E-15 88.8 5.4 50 212-264 20-70 (98)
50 2kre_A Ubiquitin conjugation f 99.0 2.2E-10 7.4E-15 88.4 6.0 50 212-264 27-76 (100)
51 2vje_A E3 ubiquitin-protein li 99.0 8.3E-11 2.8E-15 83.4 3.2 48 213-263 7-57 (64)
52 1rmd_A RAG1; V(D)J recombinati 99.0 1.1E-10 3.9E-15 91.7 3.4 50 213-265 22-72 (116)
53 2vje_B MDM4 protein; proto-onc 99.0 1.4E-10 4.6E-15 82.0 2.9 48 213-263 6-56 (63)
54 1bor_A Transcription factor PM 99.0 1.7E-10 5.8E-15 79.4 2.3 48 212-265 4-51 (56)
55 2y1n_A E3 ubiquitin-protein li 98.9 4.7E-10 1.6E-14 105.6 5.1 48 214-264 332-380 (389)
56 1jm7_B BARD1, BRCA1-associated 98.9 2.3E-10 7.8E-15 90.3 1.6 46 213-263 21-67 (117)
57 4ic3_A E3 ubiquitin-protein li 98.9 2.7E-10 9.4E-15 82.8 1.8 45 213-264 23-68 (74)
58 2c2l_A CHIP, carboxy terminus 98.8 2.2E-09 7.4E-14 95.6 5.3 50 212-264 206-256 (281)
59 2yu4_A E3 SUMO-protein ligase 98.8 2E-09 6.9E-14 81.8 3.9 46 212-260 5-59 (94)
60 3hcs_A TNF receptor-associated 98.8 2.3E-09 8E-14 89.6 3.8 52 210-264 14-66 (170)
61 2ea5_A Cell growth regulator w 98.8 3.5E-09 1.2E-13 75.8 4.2 48 212-266 13-61 (68)
62 2ecg_A Baculoviral IAP repeat- 98.8 4.1E-09 1.4E-13 76.6 4.2 46 213-265 24-70 (75)
63 3k1l_B Fancl; UBC, ring, RWD, 98.7 2.2E-09 7.4E-14 99.1 1.4 55 212-266 306-376 (381)
64 2f42_A STIP1 homology and U-bo 98.7 1.2E-08 4.1E-13 86.6 4.9 50 212-264 104-154 (179)
65 1wim_A KIAA0161 protein; ring 98.7 1.1E-08 3.8E-13 77.4 3.5 48 213-260 4-61 (94)
66 2yho_A E3 ubiquitin-protein li 98.6 5.1E-09 1.7E-13 77.2 1.1 44 214-264 18-62 (79)
67 3htk_C E3 SUMO-protein ligase 98.6 3.4E-08 1.2E-12 88.2 4.4 52 211-264 178-233 (267)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.6 4.4E-08 1.5E-12 68.5 3.9 49 212-263 4-59 (60)
69 3t6p_A Baculoviral IAP repeat- 98.5 2.7E-08 9.3E-13 92.6 2.0 45 213-264 294-339 (345)
70 2bay_A PRE-mRNA splicing facto 98.4 9E-08 3.1E-12 67.1 2.6 48 215-265 4-52 (61)
71 3vk6_A E3 ubiquitin-protein li 98.1 1.7E-06 5.9E-11 66.0 4.3 49 216-266 3-52 (101)
72 3nw0_A Non-structural maintena 97.7 2E-05 6.8E-10 69.6 4.6 49 214-264 180-230 (238)
73 2ko5_A Ring finger protein Z; 95.8 0.0028 9.6E-08 47.5 1.4 50 213-267 27-77 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0054 1.8E-07 46.1 2.8 35 213-247 2-36 (101)
75 2lri_C Autoimmune regulator; Z 93.3 0.078 2.7E-06 37.1 3.8 46 213-261 11-60 (66)
76 1wil_A KIAA1045 protein; ring 91.5 0.16 5.6E-06 37.2 3.5 31 213-247 14-47 (89)
77 1we9_A PHD finger family prote 88.8 0.14 4.9E-06 35.1 1.4 49 212-260 4-58 (64)
78 1weo_A Cellulose synthase, cat 87.4 1.4 5E-05 32.5 6.0 49 215-263 17-70 (93)
79 1mm2_A MI2-beta; PHD, zinc fin 87.2 0.18 6.1E-06 34.6 1.0 48 212-262 7-58 (61)
80 2l5u_A Chromodomain-helicase-D 85.7 0.46 1.6E-05 32.4 2.5 46 212-260 9-58 (61)
81 2k16_A Transcription initiatio 85.6 0.29 9.8E-06 34.7 1.4 51 213-264 17-72 (75)
82 2yql_A PHD finger protein 21A; 85.5 0.14 4.7E-06 34.4 -0.4 45 212-259 7-55 (56)
83 3m62_A Ubiquitin conjugation f 84.8 0.7 2.4E-05 48.0 4.3 50 212-264 889-939 (968)
84 2cs3_A Protein C14ORF4, MY039 84.2 0.83 2.9E-05 33.2 3.3 37 213-250 14-52 (93)
85 1weu_A Inhibitor of growth fam 83.4 1.5 5.2E-05 32.5 4.6 46 213-262 35-87 (91)
86 2e6r_A Jumonji/ARID domain-con 82.6 0.29 1E-05 36.4 0.4 50 211-260 13-66 (92)
87 1xwh_A Autoimmune regulator; P 82.4 0.37 1.3E-05 33.4 0.8 45 213-260 7-55 (66)
88 1wep_A PHF8; structural genomi 81.8 1.9 6.6E-05 30.7 4.6 48 214-262 12-65 (79)
89 3o36_A Transcription intermedi 81.5 0.53 1.8E-05 39.1 1.6 47 213-262 3-53 (184)
90 1f62_A Transcription factor WS 80.4 0.65 2.2E-05 30.2 1.5 44 216-259 2-49 (51)
91 2yt5_A Metal-response element- 80.4 0.56 1.9E-05 32.2 1.2 50 213-262 5-63 (66)
92 2l43_A N-teminal domain from h 80.3 0.46 1.6E-05 35.0 0.7 56 212-267 23-82 (88)
93 3lqh_A Histone-lysine N-methyl 80.2 0.8 2.7E-05 38.4 2.3 50 215-264 3-67 (183)
94 1wem_A Death associated transc 80.1 0.87 3E-05 32.3 2.1 48 214-262 16-72 (76)
95 2lv9_A Histone-lysine N-methyl 79.5 0.8 2.7E-05 34.3 1.8 46 213-259 27-75 (98)
96 1fp0_A KAP-1 corepressor; PHD 79.4 1.2 4.1E-05 32.9 2.7 48 212-262 23-74 (88)
97 2puy_A PHD finger protein 21A; 78.8 0.19 6.6E-06 34.2 -1.7 48 213-263 4-55 (60)
98 3u5n_A E3 ubiquitin-protein li 77.7 0.7 2.4E-05 39.2 1.2 46 213-262 6-56 (207)
99 2ysm_A Myeloid/lymphoid or mix 76.9 0.84 2.9E-05 34.7 1.3 46 213-258 6-55 (111)
100 2l9u_A Receptor tyrosine-prote 76.9 2.4 8.3E-05 25.7 3.0 21 40-65 11-31 (40)
101 1wev_A Riken cDNA 1110020M19; 76.6 0.28 9.5E-06 36.2 -1.4 55 213-267 15-79 (88)
102 1wfk_A Zinc finger, FYVE domai 75.6 2.6 8.8E-05 30.9 3.6 54 212-265 7-68 (88)
103 1wen_A Inhibitor of growth fam 75.0 2.3 7.9E-05 29.9 3.1 46 213-262 15-67 (71)
104 3i2d_A E3 SUMO-protein ligase 71.6 3.6 0.00012 38.2 4.4 46 215-262 250-299 (371)
105 2xb1_A Pygopus homolog 2, B-ce 71.1 0.94 3.2E-05 34.4 0.3 48 215-262 4-63 (105)
106 3v43_A Histone acetyltransfera 70.8 4.8 0.00016 30.5 4.3 44 215-258 6-62 (112)
107 4fo9_A E3 SUMO-protein ligase 69.8 4.3 0.00015 37.5 4.4 46 215-262 216-265 (360)
108 2ri7_A Nucleosome-remodeling f 69.6 1.2 4E-05 36.5 0.5 47 213-260 7-59 (174)
109 2vpb_A Hpygo1, pygopus homolog 69.0 3.6 0.00012 28.4 2.9 33 213-245 7-41 (65)
110 2lbm_A Transcriptional regulat 67.6 5.8 0.0002 31.7 4.3 45 212-259 61-116 (142)
111 1wew_A DNA-binding family prot 65.9 2.5 8.4E-05 30.1 1.6 50 213-263 15-75 (78)
112 2d8v_A Zinc finger FYVE domain 65.3 4 0.00014 28.4 2.5 32 212-247 6-38 (67)
113 3v43_A Histone acetyltransfera 65.0 1.8 6.3E-05 33.0 0.8 44 216-259 63-111 (112)
114 2ku3_A Bromodomain-containing 64.3 1.9 6.3E-05 30.4 0.7 49 212-260 14-66 (71)
115 2kgg_A Histone demethylase jar 63.4 2.8 9.6E-05 27.4 1.4 43 216-258 4-52 (52)
116 3o70_A PHD finger protein 13; 61.6 1.8 6.3E-05 30.1 0.2 46 212-259 17-66 (68)
117 2yw8_A RUN and FYVE domain-con 61.5 5.7 0.0002 28.4 2.9 53 213-265 18-77 (82)
118 1z2q_A LM5-1; membrane protein 61.4 8.4 0.00029 27.6 3.8 35 213-247 20-55 (84)
119 2a20_A Regulating synaptic mem 61.3 0.76 2.6E-05 31.3 -1.7 48 212-259 7-59 (62)
120 1joc_A EEA1, early endosomal a 61.2 5 0.00017 31.3 2.7 34 214-247 69-103 (125)
121 1wee_A PHD finger family prote 60.8 1.9 6.4E-05 30.2 0.1 48 213-261 15-67 (72)
122 2ro1_A Transcription intermedi 60.7 4.1 0.00014 33.9 2.3 45 215-262 3-51 (189)
123 1y02_A CARP2, FYVE-ring finger 60.2 1.4 4.6E-05 34.5 -0.8 47 214-260 19-66 (120)
124 3t7l_A Zinc finger FYVE domain 59.6 5.8 0.0002 29.0 2.7 49 214-262 20-75 (90)
125 4gne_A Histone-lysine N-methyl 59.3 8.4 0.00029 29.2 3.6 48 212-265 13-67 (107)
126 3kv5_D JMJC domain-containing 58.8 2.2 7.5E-05 41.1 0.3 45 216-260 38-88 (488)
127 2o35_A Hypothetical protein DU 58.6 3.6 0.00012 31.0 1.4 12 239-250 43-54 (105)
128 3fyb_A Protein of unknown func 58.4 3.7 0.00013 30.9 1.4 11 239-249 42-52 (104)
129 3ql9_A Transcriptional regulat 58.2 11 0.00039 29.5 4.3 46 211-259 54-110 (129)
130 1vfy_A Phosphatidylinositol-3- 57.1 7.5 0.00026 27.1 2.8 32 215-246 12-44 (73)
131 1x4u_A Zinc finger, FYVE domai 56.5 7.3 0.00025 27.9 2.7 34 213-246 13-47 (84)
132 1dvp_A HRS, hepatocyte growth 55.7 5.6 0.00019 33.7 2.3 33 215-247 162-195 (220)
133 1z60_A TFIIH basal transcripti 55.0 5.1 0.00017 27.2 1.5 42 216-257 17-58 (59)
134 3zyq_A Hepatocyte growth facto 54.8 11 0.00039 32.0 4.2 50 215-264 165-223 (226)
135 3shb_A E3 ubiquitin-protein li 54.3 2.4 8.2E-05 30.3 -0.2 44 216-259 28-76 (77)
136 1zbd_B Rabphilin-3A; G protein 52.3 7.1 0.00024 30.9 2.2 47 213-259 54-106 (134)
137 3ask_A E3 ubiquitin-protein li 52.1 5.2 0.00018 34.5 1.5 45 215-259 175-224 (226)
138 3c6w_A P28ING5, inhibitor of g 52.0 3.4 0.00011 27.9 0.2 43 213-259 8-57 (59)
139 2kwj_A Zinc finger protein DPF 51.2 1.3 4.4E-05 34.0 -2.3 49 216-264 60-112 (114)
140 2vnf_A ING 4, P29ING4, inhibit 50.7 3.5 0.00012 27.8 0.2 42 214-259 10-58 (60)
141 2e6s_A E3 ubiquitin-protein li 49.7 4.3 0.00015 28.9 0.5 45 215-259 27-76 (77)
142 3asl_A E3 ubiquitin-protein li 48.3 4.3 0.00015 28.3 0.3 43 216-259 20-68 (70)
143 3mpx_A FYVE, rhogef and PH dom 47.9 3.8 0.00013 37.9 0.0 48 214-261 375-430 (434)
144 2kwj_A Zinc finger protein DPF 46.9 12 0.00041 28.4 2.7 43 216-258 3-59 (114)
145 3kqi_A GRC5, PHD finger protei 44.3 9.9 0.00034 26.6 1.7 48 216-263 11-64 (75)
146 1wd2_A Ariadne-1 protein homol 43.0 3.5 0.00012 28.0 -0.8 37 215-251 7-48 (60)
147 2cu8_A Cysteine-rich protein 2 42.0 31 0.001 23.4 4.1 40 215-264 10-49 (76)
148 1x64_A Alpha-actinin-2 associa 41.8 71 0.0024 22.3 6.2 40 214-264 25-64 (89)
149 3mjh_B Early endosome antigen 41.8 6.5 0.00022 23.7 0.4 15 213-227 4-18 (34)
150 2ysm_A Myeloid/lymphoid or mix 41.3 6 0.00021 29.8 0.2 45 216-260 56-104 (111)
151 2dj7_A Actin-binding LIM prote 39.8 36 0.0012 23.6 4.2 41 214-264 15-55 (80)
152 2pv0_B DNA (cytosine-5)-methyl 39.4 20 0.00067 33.4 3.3 45 212-259 91-147 (386)
153 2zet_C Melanophilin; complex, 38.6 19 0.00065 29.0 2.8 46 213-259 67-116 (153)
154 2jne_A Hypothetical protein YF 37.4 2.5 8.6E-05 31.7 -2.4 40 215-262 33-72 (101)
155 3a1b_A DNA (cytosine-5)-methyl 37.2 24 0.00081 28.7 3.1 34 212-249 77-113 (159)
156 1iml_A CRIP, cysteine rich int 36.7 22 0.00074 24.3 2.5 42 213-258 26-68 (76)
157 1x62_A C-terminal LIM domain p 36.6 45 0.0015 22.8 4.3 37 215-262 16-52 (79)
158 2g6q_A Inhibitor of growth pro 36.2 8.3 0.00028 26.2 0.2 41 214-259 11-59 (62)
159 2jmi_A Protein YNG1, ING1 homo 33.2 9.9 0.00034 28.0 0.2 44 213-260 25-76 (90)
160 2jvx_A NF-kappa-B essential mo 33.2 13 0.00044 21.3 0.7 11 253-263 5-15 (28)
161 2co8_A NEDD9 interacting prote 31.0 56 0.0019 22.6 4.0 41 215-265 16-56 (82)
162 1m3v_A FLIN4, fusion of the LI 30.7 33 0.0011 25.8 2.9 50 214-264 32-82 (122)
163 2jmo_A Parkin; IBR, E3 ligase, 30.5 4.4 0.00015 28.9 -2.1 15 234-248 55-69 (80)
164 2dar_A PDZ and LIM domain prot 30.1 62 0.0021 22.7 4.2 40 214-264 25-64 (90)
165 2l3k_A Rhombotin-2, linker, LI 29.9 96 0.0033 23.1 5.5 37 212-249 34-70 (123)
166 2knc_B Integrin beta-3; transm 29.8 1.5E+02 0.005 20.9 7.2 29 60-88 25-53 (79)
167 2gmg_A Hypothetical protein PF 29.6 8.8 0.0003 29.1 -0.6 24 233-261 71-94 (105)
168 2jrp_A Putative cytoplasmic pr 29.5 3.5 0.00012 29.9 -2.7 10 216-225 4-13 (81)
169 3kv4_A PHD finger protein 8; e 27.3 14 0.00049 35.0 0.3 47 216-262 6-58 (447)
170 2ku7_A MLL1 PHD3-CYP33 RRM chi 26.6 82 0.0028 23.4 4.6 30 235-264 8-48 (140)
171 1jdm_A Sarcolipin; helix, memb 26.3 45 0.0015 19.2 2.1 25 32-56 6-30 (31)
172 1wyh_A SLIM 2, skeletal muscle 26.1 57 0.002 21.6 3.2 41 215-264 6-46 (72)
173 2xjy_A Rhombotin-2; oncoprotei 24.7 50 0.0017 24.8 3.0 51 213-263 28-78 (131)
174 1x4k_A Skeletal muscle LIM-pro 24.6 58 0.002 21.5 3.0 40 216-264 7-46 (72)
175 2d8y_A Eplin protein; LIM doma 23.2 1.6E+02 0.0055 20.4 5.4 40 215-264 16-55 (91)
176 3f6q_B LIM and senescent cell 23.0 37 0.0012 22.4 1.7 41 215-264 12-52 (72)
177 1x63_A Skeletal muscle LIM-pro 22.7 79 0.0027 21.5 3.5 41 215-264 16-56 (82)
178 1loi_A Cyclic 3',5'-AMP specif 22.1 5.9 0.0002 21.7 -2.0 12 238-249 6-17 (26)
179 1g47_A Pinch protein; LIM doma 22.0 68 0.0023 21.5 3.0 41 215-264 12-52 (77)
180 1zfo_A LAsp-1; LIM domain, zin 21.7 41 0.0014 19.2 1.5 26 216-243 5-30 (31)
181 3o7a_A PHD finger protein 13 v 21.6 17 0.00057 23.5 -0.4 40 219-259 8-51 (52)
182 2ct7_A Ring finger protein 31; 20.8 8 0.00027 27.8 -2.3 28 231-258 44-74 (86)
183 1x4l_A Skeletal muscle LIM-pro 20.8 83 0.0028 20.8 3.2 40 215-263 6-47 (72)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.68 E-value=9.3e-17 Score=122.02 Aligned_cols=80 Identities=33% Similarity=0.717 Sum_probs=66.4
Q ss_pred CCCCCCCCHHHHhcCCceeeeCCCCCCCCCCCCCCCCCCCCCCcchhhhhhhccCCCCCCCCCcccccccccccccCcee
Q 048433 151 TSTTPSMSEEEINSLPVHKYKVPGPASESVGSSIRQPSSSAATPEQSKQESKKADGSTKSSEDELTCTICLEQVKCGELV 230 (279)
Q Consensus 151 ~~~~~~ls~e~i~~LP~~~~~~~~~s~~s~~s~~~~~ss~~~~~e~~~~~~~~~~~~~~~~~e~~~C~ICle~~~~~~~v 230 (279)
.....+++++.+++||...+..... ..+++..|+||++.+..++.+
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~----------------------------------~~~~~~~C~IC~~~~~~~~~~ 56 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHG----------------------------------AVGQEMCCPICCSEYVKGDVA 56 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCS----------------------------------SSSSCSEETTTTEECCTTCEE
T ss_pred CcCCCCCCHHHHHhCCCeeeccccc----------------------------------ccCCCCCCcccChhhcCCCcE
Confidence 3467789999999999887643211 123456899999999988888
Q ss_pred EEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 231 RSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 231 ~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
..++|||.||..||.+|++.+.+||+||..+...
T Consensus 57 ~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 57 TELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp EEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred EecCCCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 8999999999999999999999999999998753
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-16 Score=115.93 Aligned_cols=53 Identities=38% Similarity=1.039 Sum_probs=48.1
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
.++..|+||++.+..++.+..++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34568999999999888888999999999999999999999999999988764
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=109.48 Aligned_cols=59 Identities=31% Similarity=0.636 Sum_probs=51.5
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQENR 269 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~~~ 269 (279)
..++..|+||++.+..+..+..++|+|.||..||.+|++.+.+||+||..+........
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccccCC
Confidence 34567899999999988888889999999999999999999999999999987665443
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=2.3e-15 Score=110.48 Aligned_cols=61 Identities=39% Similarity=0.859 Sum_probs=52.8
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCCCCCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQENRESE 272 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~~~~~~ 272 (279)
.++..|+||++.|..++.+..++|+|.||..||.+|++.+.+||+||..+.......+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 73 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPG 73 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCCSS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCCCC
Confidence 4567899999999988888889999999999999999999999999999988766554433
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=5e-15 Score=106.16 Aligned_cols=54 Identities=43% Similarity=0.998 Sum_probs=48.5
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
.++..|+||++.+..++.+..++|||.||..||.+|++.+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 445689999999988778889999999999999999999999999999987654
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.53 E-value=4.6e-15 Score=101.56 Aligned_cols=51 Identities=43% Similarity=1.064 Sum_probs=45.9
Q ss_pred CCcccccccccccccCceeEEeC-CCCcccHhhHHHHHhcCCCCcccccccC
Q 048433 212 EDELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQRGTCPVCKFRMG 262 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~~~~~CP~CR~~i~ 262 (279)
+++..|+||++.+..++.+..++ |||.||..||.+|++.+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34568999999999888888898 9999999999999999999999998864
No 7
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.3e-14 Score=101.35 Aligned_cols=52 Identities=27% Similarity=0.684 Sum_probs=44.6
Q ss_pred CCcccccccccccccC----ceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 212 EDELTCTICLEQVKCG----ELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~----~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
.++..|+||++.+..+ ..+..++|||.||..||.+|++.+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999998753 234678999999999999999999999999998865
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.45 E-value=5.8e-14 Score=95.91 Aligned_cols=50 Identities=30% Similarity=0.717 Sum_probs=43.2
Q ss_pred CcccccccccccccC-ceeEEeCCCCcccHhhHHHHHhcCCCCcccccccC
Q 048433 213 DELTCTICLEQVKCG-ELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~~-~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~ 262 (279)
++..|+||++.+..+ +.+..++|||.||..||.+|++.+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456899999998653 35677899999999999999999999999999875
No 9
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.45 E-value=5.7e-14 Score=100.20 Aligned_cols=52 Identities=42% Similarity=0.846 Sum_probs=44.5
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~ 266 (279)
++..|+||++.+.. ....++|||.||..|+.+|++++.+||+||..+.....
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 55 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH 55 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhh
Confidence 34589999999873 34678999999999999999999999999999986543
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.45 E-value=4.7e-14 Score=101.28 Aligned_cols=55 Identities=25% Similarity=0.620 Sum_probs=46.6
Q ss_pred CCcccccccccccccC----ceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCC
Q 048433 212 EDELTCTICLEQVKCG----ELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~----~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~ 266 (279)
+++..|+||++.+..+ ..+..++|||.||..||.+|++++.+||+||..+..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 4567899999998753 344778999999999999999999999999999886543
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=7e-14 Score=103.85 Aligned_cols=51 Identities=33% Similarity=0.700 Sum_probs=41.5
Q ss_pred Cccccccccccccc-----------CceeEEeC-CCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 213 DELTCTICLEQVKC-----------GELVRSLP-CLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~-----------~~~v~~Lp-C~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
++..|+||++.+.. ++.++.++ |+|.||.+||.+|++++.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45578888888854 34455665 99999999999999999999999998754
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.44 E-value=1.1e-13 Score=108.75 Aligned_cols=58 Identities=28% Similarity=0.502 Sum_probs=46.0
Q ss_pred cccccccccccccCc---------------eeEEeCCCCcccHhhHHHHHh-----cCCCCcccccccCCCCCCCCCC
Q 048433 214 ELTCTICLEQVKCGE---------------LVRSLPCLHQFHANCIDPWLR-----QRGTCPVCKFRMGSGWQENRES 271 (279)
Q Consensus 214 ~~~C~ICle~~~~~~---------------~v~~LpC~H~Fh~~CI~~WL~-----~~~~CP~CR~~i~~~~~~~~~~ 271 (279)
+..|+||++.|..+. .+..++|+|.||..||.+|+. .+.+||+||..+..+...+..+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g 102 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG 102 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence 458999999997543 334678999999999999994 4678999999998876554443
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.5e-13 Score=98.23 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=46.1
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQEN 268 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~~ 268 (279)
.+++..|+||++.+.. .+..++|||.||..||.+|++.+..||+||..+.......
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred cCCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 4566789999999884 2333489999999999999999999999999998765444
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=99.94 Aligned_cols=51 Identities=25% Similarity=0.526 Sum_probs=44.1
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
.++..|+||++.+.. ...++|||.||..||.+|++.+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 456789999999873 457899999999999999999999999999987544
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.39 E-value=1.6e-13 Score=96.24 Aligned_cols=53 Identities=26% Similarity=0.639 Sum_probs=45.0
Q ss_pred CcccccccccccccC----ceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 213 DELTCTICLEQVKCG----ELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 213 e~~~C~ICle~~~~~----~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
++..|+||++.+..+ ..+..++|||.||..||.+|++++.+||+||..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 346899999998753 34467899999999999999999999999999987653
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.2e-13 Score=97.74 Aligned_cols=50 Identities=36% Similarity=0.896 Sum_probs=44.3
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
.++..|+||++.+.. ..++|||.||..||.+|++.+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456789999999874 67899999999999999999999999999988654
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.9e-13 Score=98.81 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=43.0
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
.+...|+||++.+.. ...++|||.||..||.+|++....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 456789999999874 3468999999999999999999999999999873
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=8.6e-13 Score=98.42 Aligned_cols=55 Identities=25% Similarity=0.524 Sum_probs=46.1
Q ss_pred CCCcccccccccccccCce-eEEeCCCCcccHhhHHHHHhcC---CCCcccccccCCCC
Q 048433 211 SEDELTCTICLEQVKCGEL-VRSLPCLHQFHANCIDPWLRQR---GTCPVCKFRMGSGW 265 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~-v~~LpC~H~Fh~~CI~~WL~~~---~~CP~CR~~i~~~~ 265 (279)
..+...|+||++.+...+. ...++|||.||..||.+|++.+ ..||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4556789999999986543 6778999999999999999875 78999999887653
No 19
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.35 E-value=5.5e-13 Score=104.21 Aligned_cols=50 Identities=30% Similarity=0.548 Sum_probs=42.5
Q ss_pred CcccccccccccccCc---------------eeEEeCCCCcccHhhHHHHHhcCCCCcccccccC
Q 048433 213 DELTCTICLEQVKCGE---------------LVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~~~---------------~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~ 262 (279)
++..|+||++.|.... .+..++|+|.||..||.+||+.+.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 4568999999988541 2566889999999999999999999999999854
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=95.24 Aligned_cols=52 Identities=31% Similarity=0.555 Sum_probs=43.0
Q ss_pred CCCcccccccccccccCceeEEeC-CCCcccHhhHHHHHhcC--CCCcccccccCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQR--GTCPVCKFRMGSGW 265 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~~~--~~CP~CR~~i~~~~ 265 (279)
..++..|+||++.+..+ ..++ |||.||..||.+|++.+ ..||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 45677899999999843 4689 99999999999999865 68999999765443
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.8e-13 Score=93.40 Aligned_cols=52 Identities=21% Similarity=0.473 Sum_probs=43.3
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHh-cCCCCcccccccCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR-QRGTCPVCKFRMGSGW 265 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~~~~ 265 (279)
..++..|+||++.+..+. .++|||.||..||.+|++ .+..||+||..+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 355678999999988543 479999999999999995 5678999999987653
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-12 Score=93.57 Aligned_cols=52 Identities=27% Similarity=0.573 Sum_probs=43.1
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHh---cCCCCcccccccCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR---QRGTCPVCKFRMGSGW 265 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~---~~~~CP~CR~~i~~~~ 265 (279)
..++..|+||++.+.. ...++|||.||..||.+|++ .+..||+||..+....
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 4556789999999883 45679999999999999997 4568999999987643
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=4.8e-13 Score=108.88 Aligned_cols=49 Identities=35% Similarity=0.866 Sum_probs=43.1
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
++..|+||++.+.. .+.+||||.||..||..|+..+.+||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 45689999999873 45789999999999999999999999999998654
No 24
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.4e-12 Score=95.55 Aligned_cols=54 Identities=22% Similarity=0.596 Sum_probs=44.7
Q ss_pred CCcccccccccccccCceeEEeCCC-----CcccHhhHHHHHhcC--CCCcccccccCCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCL-----HQFHANCIDPWLRQR--GTCPVCKFRMGSGWQ 266 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~-----H~Fh~~CI~~WL~~~--~~CP~CR~~i~~~~~ 266 (279)
.++..|.||++++..++.+ .+||+ |.||.+||.+|+..+ .+||+||+.+.-...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 3456899999999876655 68996 999999999999875 489999999876554
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=4.5e-12 Score=92.72 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=43.6
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc-CCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~~~ 265 (279)
.++..|+||++.+.. ...++|||.||..||.+|++. +.+||+||..+....
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 456789999999984 356799999999999999987 788999999987543
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=5.8e-12 Score=92.93 Aligned_cols=52 Identities=38% Similarity=0.741 Sum_probs=43.7
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc------CCCCcccccccCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ------RGTCPVCKFRMGSGW 265 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~------~~~CP~CR~~i~~~~ 265 (279)
..++..|+||++.+..+ ..++|||.||..||..|+.. ...||+||..+....
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 34567899999998844 46899999999999999987 667999999987653
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.2e-12 Score=92.77 Aligned_cols=52 Identities=33% Similarity=0.715 Sum_probs=43.8
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc------CCCCcccccccCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ------RGTCPVCKFRMGSGW 265 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~------~~~CP~CR~~i~~~~ 265 (279)
..++..|+||++.+..+ ..++|||.||..|+..|++. ...||+||..+....
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 34567899999998743 45799999999999999987 778999999988643
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.23 E-value=1.5e-12 Score=95.24 Aligned_cols=51 Identities=33% Similarity=0.685 Sum_probs=43.2
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc-------CCCCcccccccCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-------RGTCPVCKFRMGSG 264 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-------~~~CP~CR~~i~~~ 264 (279)
..++..|+||++.+..+ ..++|||.||..||.+|++. ...||+||..+...
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 35677899999998854 45899999999999999986 56799999998764
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.23 E-value=3.3e-12 Score=98.34 Aligned_cols=50 Identities=26% Similarity=0.691 Sum_probs=42.5
Q ss_pred CCcccccccccccccCceeEE-eCCCCcccHhhHHHHHhcC-CCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCGELVRS-LPCLHQFHANCIDPWLRQR-GTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~-LpC~H~Fh~~CI~~WL~~~-~~CP~CR~~i~~~ 264 (279)
.++..|+||++.+.. .+. ++|||.||..||.+|++.+ ..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 20 AEVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 356789999999983 345 8999999999999999987 6999999998643
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=4.5e-12 Score=101.05 Aligned_cols=55 Identities=25% Similarity=0.622 Sum_probs=46.9
Q ss_pred CcccccccccccccC----ceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCCCC
Q 048433 213 DELTCTICLEQVKCG----ELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGWQE 267 (279)
Q Consensus 213 e~~~C~ICle~~~~~----~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~ 267 (279)
++.+|+||++.+..+ ..+..++|||.||..||.+|++.+.+||+||..+......
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccc
Confidence 456899999999754 3447899999999999999999999999999999876543
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=87.18 Aligned_cols=45 Identities=29% Similarity=0.675 Sum_probs=37.6
Q ss_pred CCCCcccccccccccccCceeEEeCCCCcccHhhHHHHHh---cCCCCccc
Q 048433 210 SSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR---QRGTCPVC 257 (279)
Q Consensus 210 ~~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~---~~~~CP~C 257 (279)
..+++..|+||++.+.. ...++|||.||..||.+|++ .+..||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567799999999884 35679999999999999998 45689998
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=93.57 Aligned_cols=49 Identities=31% Similarity=0.617 Sum_probs=41.4
Q ss_pred CCCcccccccccccccCceeEEeC-CCCcccHhhHHHHHhcC--CCCcccccccC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQR--GTCPVCKFRMG 262 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~~~--~~CP~CR~~i~ 262 (279)
..++..|+||++.+.. ...++ |||.||..||..|+..+ ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4567899999999984 35789 99999999999999754 58999999873
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.21 E-value=1.4e-12 Score=103.68 Aligned_cols=50 Identities=32% Similarity=0.592 Sum_probs=0.9
Q ss_pred CcccccccccccccC-------------c--eeEEeCCCCcccHhhHHHHHhcCCCCcccccccC
Q 048433 213 DELTCTICLEQVKCG-------------E--LVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~~-------------~--~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~ 262 (279)
++..|+||++.|..+ + .+..++|+|.||..||.+||+.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 456899999999752 1 2233579999999999999999999999999854
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=1e-11 Score=87.79 Aligned_cols=53 Identities=23% Similarity=0.505 Sum_probs=42.3
Q ss_pred Cccccccccc-ccccCcee-EEeCCCCcccHhhHHHHHhc-CCCCcccccccCCCC
Q 048433 213 DELTCTICLE-QVKCGELV-RSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGSGW 265 (279)
Q Consensus 213 e~~~C~ICle-~~~~~~~v-~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~~~ 265 (279)
++..|+||++ .+..+... ..++|||.||..||.+|+.+ ...||+||..+....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3568999999 77765432 45789999999999999765 567999999987654
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.19 E-value=1e-11 Score=96.61 Aligned_cols=50 Identities=26% Similarity=0.673 Sum_probs=43.0
Q ss_pred CCcccccccccccccCceeEEe-CCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
.++..|+||++.+.. ...+ +|||.||..||..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 356789999999983 3455 9999999999999999999999999998764
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=98.82 Aligned_cols=48 Identities=27% Similarity=0.722 Sum_probs=41.4
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCC-CCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG-TCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~-~CP~CR~~i~~ 263 (279)
++..|+||++.+.. ...++|||.||..||..|+..+. .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45689999999983 45689999999999999998644 89999999976
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.19 E-value=7.5e-12 Score=95.83 Aligned_cols=48 Identities=29% Similarity=0.714 Sum_probs=41.6
Q ss_pred CcccccccccccccCceeEEe-CCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
++..|+||++.+.. ...+ +|||.||..||.+|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45689999999984 3345 899999999999999999999999998875
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1e-11 Score=85.44 Aligned_cols=44 Identities=36% Similarity=0.836 Sum_probs=36.6
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHh---cCCCCccc
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR---QRGTCPVC 257 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~---~~~~CP~C 257 (279)
..++..|+||++.+..+ ..++|||.||..||.+|++ .+..||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999854 4589999999999999954 56789998
No 39
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=3.2e-11 Score=88.16 Aligned_cols=54 Identities=19% Similarity=0.439 Sum_probs=43.5
Q ss_pred CCCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcC--CCCcccccccCCCC
Q 048433 210 SSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQR--GTCPVCKFRMGSGW 265 (279)
Q Consensus 210 ~~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~--~~CP~CR~~i~~~~ 265 (279)
-.+....|+||.+.+..++. ...|+|.||..||.+||+.+ .+||+||..+....
T Consensus 11 y~~~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred ccCCCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 34455789999999986643 33799999999999999987 78999998776443
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.15 E-value=4e-11 Score=88.50 Aligned_cols=58 Identities=22% Similarity=0.539 Sum_probs=44.6
Q ss_pred CCCcccccccccccccCceeEEeC--CCCcccHhhHHHHHhc-CCCCcccccccCCCCCCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLP--CLHQFHANCIDPWLRQ-RGTCPVCKFRMGSGWQENR 269 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~Lp--C~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~~~~~~~ 269 (279)
.+++.+|+||++.+...+ ...+| |||.||..|+.+|+.. ...||+||+.+........
T Consensus 8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCC
T ss_pred cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhc
Confidence 356779999999886432 23444 9999999999998854 5679999999987765433
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.13 E-value=1.7e-11 Score=102.45 Aligned_cols=50 Identities=40% Similarity=0.845 Sum_probs=41.9
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc-CCCCcccccccCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGS 263 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~ 263 (279)
.++..|+||++.+.. .+..++|||.||..||..|++. +..||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456789999999984 3334499999999999999997 7789999999854
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.11 E-value=7.8e-12 Score=98.31 Aligned_cols=49 Identities=31% Similarity=0.670 Sum_probs=41.8
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc-CCCCcccccccCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGS 263 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~ 263 (279)
.++..|+||++.+.. ...++|||.||..||.+|+.. +..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 456789999999884 456799999999999999976 6689999998863
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.10 E-value=7.3e-11 Score=88.33 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=43.9
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
.++..|+||++.+. +.+.++|||.||..||.+|+..+.+||+||..+...
T Consensus 12 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 45789999999998 345789999999999999999889999999988653
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=2.8e-11 Score=94.22 Aligned_cols=51 Identities=35% Similarity=0.613 Sum_probs=42.3
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCC---CCcccccccCCCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG---TCPVCKFRMGSGWQ 266 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~---~CP~CR~~i~~~~~ 266 (279)
+...|+||++.+..+ ..++|||.||..||..|+..+. .||+||..+.....
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 346899999998744 3579999999999999998754 89999999886543
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.10 E-value=3.8e-11 Score=99.21 Aligned_cols=49 Identities=22% Similarity=0.671 Sum_probs=42.3
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCC-CCcccccccCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG-TCPVCKFRMGSG 264 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~-~CP~CR~~i~~~ 264 (279)
++..|+||++.+.. ...++|||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999884 34689999999999999998755 899999999876
No 46
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.08 E-value=2.1e-11 Score=99.85 Aligned_cols=50 Identities=18% Similarity=0.410 Sum_probs=42.1
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCC-CCcccccccCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG-TCPVCKFRMGS 263 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~-~CP~CR~~i~~ 263 (279)
.+++..|+||++.+..+ ..++|||.||..||.+|++... .||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 45678999999999844 4579999999999999998765 89999998643
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=5.3e-11 Score=94.76 Aligned_cols=53 Identities=26% Similarity=0.664 Sum_probs=44.9
Q ss_pred CCcccccccccccccC----ceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCG----ELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~----~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
++...|+||++.+..+ .....++|||.||..||.+|++.+++||+||..+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4566899999998753 2346789999999999999999999999999998754
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.07 E-value=6.6e-11 Score=93.56 Aligned_cols=51 Identities=31% Similarity=0.610 Sum_probs=43.2
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCC-CCcccccccCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG-TCPVCKFRMGSG 264 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~-~CP~CR~~i~~~ 264 (279)
..++..|+||++.+..+ ..++|||.||..||.+|++.+. .||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 45667999999998843 5689999999999999998765 999999998753
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.05 E-value=1.7e-10 Score=88.78 Aligned_cols=50 Identities=18% Similarity=0.052 Sum_probs=44.1
Q ss_pred CCcccccccccccccCceeEEeCCC-CcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCL-HQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~-H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
.++..|+||++.+. +.+.++|| |.||..||.+|+..+.+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 45789999999999 34578999 9999999999999889999999998754
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.05 E-value=2.2e-10 Score=88.44 Aligned_cols=50 Identities=16% Similarity=0.063 Sum_probs=44.1
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
.++..|+||++.+. +.+.++|||.||..||.+|+..+.+||+||.++...
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 45789999999998 445789999999999999999889999999998754
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.04 E-value=8.3e-11 Score=83.35 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=40.3
Q ss_pred CcccccccccccccCceeEEe--CCCCc-ccHhhHHHHHhcCCCCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSL--PCLHQ-FHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L--pC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
++..|.||++... +...+ ||||. ||..|+.+|.+.+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 4568999999866 33444 99999 8999999999999999999998853
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=1.1e-10 Score=91.70 Aligned_cols=50 Identities=24% Similarity=0.496 Sum_probs=42.6
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc-CCCCcccccccCCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGSGW 265 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~~~ 265 (279)
++..|+||++.+.. ...++|||.||..||.+|+.. +..||+||..+....
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 45689999999873 345899999999999999987 778999999987644
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.00 E-value=1.4e-10 Score=81.99 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=39.8
Q ss_pred CcccccccccccccCceeEEe--CCCCc-ccHhhHHHHHhcCCCCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSL--PCLHQ-FHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L--pC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
.+..|.||++... +...+ ||||. ||..|+.+|.+.+..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 4458999998765 23344 99998 9999999999888999999999854
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.7e-10 Score=79.44 Aligned_cols=48 Identities=31% Similarity=0.743 Sum_probs=39.9
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
.++..|+||++.+..+ ..++|||.||..||..| ...||+||+.+....
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4567899999999854 57899999999999884 678999999887544
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.94 E-value=4.7e-10 Score=105.60 Aligned_cols=48 Identities=29% Similarity=0.709 Sum_probs=42.0
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHh-cCCCCcccccccCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR-QRGTCPVCKFRMGSG 264 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~~~ 264 (279)
...|+||++.+. .+..+||||.||..|+..|+. .+..||+||..+...
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 358999999886 456799999999999999998 688999999988764
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=2.3e-10 Score=90.29 Aligned_cols=46 Identities=28% Similarity=0.583 Sum_probs=39.7
Q ss_pred CcccccccccccccCceeEEe-CCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
++..|+||++.+..+ ..+ +|||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 457899999999843 456 8999999999999988 789999999854
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.91 E-value=2.7e-10 Score=82.82 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=38.5
Q ss_pred CcccccccccccccCceeEEeCCCCc-ccHhhHHHHHhcCCCCcccccccCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQ-FHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
++..|+||++.+. +...+||||. ||..|+..| ..||+||..+...
T Consensus 23 ~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 4568999999877 4567899999 999999998 8899999988653
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.84 E-value=2.2e-09 Score=95.65 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=42.0
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcC-CCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQR-GTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~-~~CP~CR~~i~~~ 264 (279)
.+...|+||++.+. +.++++|||.||..||.+|+..+ .+||+||.++...
T Consensus 206 ~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 45678999999998 34578999999999999999864 4599999988643
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=2e-09 Score=81.83 Aligned_cols=46 Identities=26% Similarity=0.533 Sum_probs=38.2
Q ss_pred CCcccccccccccccCceeEEeC-CCCcccHhhHHHHHhcC------CCCcc--cccc
Q 048433 212 EDELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQR------GTCPV--CKFR 260 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~~~------~~CP~--CR~~ 260 (279)
.++..|+||++.|.. .+.++ |||.||..||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456789999999983 45676 99999999999999864 48999 9855
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.80 E-value=2.3e-09 Score=89.64 Aligned_cols=52 Identities=29% Similarity=0.549 Sum_probs=43.4
Q ss_pred CCCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcC-CCCcccccccCCC
Q 048433 210 SSEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQR-GTCPVCKFRMGSG 264 (279)
Q Consensus 210 ~~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~-~~CP~CR~~i~~~ 264 (279)
..+++..|+||++.+..+ ..++|||.||..||.+|++.+ ..||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 345678999999999843 458999999999999999864 4899999988764
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=3.5e-09 Score=75.84 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=39.2
Q ss_pred CCcccccccccccccCceeEEeCCCCc-ccHhhHHHHHhcCCCCcccccccCCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQ-FHANCIDPWLRQRGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~~~~ 266 (279)
+++..|.||++... .+..+||||. ||..|+.. ...||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESFA 61 (68)
T ss_dssp CCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEEC
T ss_pred CCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhceEE
Confidence 34568999998765 5678999999 99999984 5789999999876543
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=4.1e-09 Score=76.61 Aligned_cols=46 Identities=24% Similarity=0.581 Sum_probs=37.5
Q ss_pred CcccccccccccccCceeEEeCCCCc-ccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQ-FHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
++..|+||++.+. ++..+||||. ||..|+.+ ...||+||.++....
T Consensus 24 ~~~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence 3457999999877 3457899999 99999964 478999999987643
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.72 E-value=2.2e-09 Score=99.06 Aligned_cols=55 Identities=31% Similarity=0.822 Sum_probs=42.0
Q ss_pred CCcccccccccccccCcee----E-EeCCCCcccHhhHHHHHhcC-----------CCCcccccccCCCCC
Q 048433 212 EDELTCTICLEQVKCGELV----R-SLPCLHQFHANCIDPWLRQR-----------GTCPVCKFRMGSGWQ 266 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v----~-~LpC~H~Fh~~CI~~WL~~~-----------~~CP~CR~~i~~~~~ 266 (279)
+...+|+||++.+..+..+ . ..+|+|.||..|+.+|++.. ++||.||.++..++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 3456899999998862222 1 24599999999999999752 469999999886653
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.69 E-value=1.2e-08 Score=86.56 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=42.3
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcC-CCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQR-GTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~-~~CP~CR~~i~~~ 264 (279)
.+...|+||++.+.. .+.++|||.||..||..|+..+ .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 467899999999983 4577999999999999999874 4699999988653
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.66 E-value=1.1e-08 Score=77.44 Aligned_cols=48 Identities=19% Similarity=0.539 Sum_probs=38.5
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc--------CCCCcc--cccc
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ--------RGTCPV--CKFR 260 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~--------~~~CP~--CR~~ 260 (279)
+..+|+||++.+..++.+...+|||.||.+|+..++.. .-.||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999999886655444579999999999999863 126999 9987
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=5.1e-09 Score=77.18 Aligned_cols=44 Identities=27% Similarity=0.634 Sum_probs=37.5
Q ss_pred cccccccccccccCceeEEeCCCCc-ccHhhHHHHHhcCCCCcccccccCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQ-FHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
+..|+||++.+. ++..+||||. ||..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 457999998866 5678999999 999999887 3999999988765
No 67
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.4e-08 Score=88.17 Aligned_cols=52 Identities=27% Similarity=0.473 Sum_probs=42.1
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhcC--CCCcc--cccccCCC
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQR--GTCPV--CKFRMGSG 264 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~--~~CP~--CR~~i~~~ 264 (279)
...+..|+||++.|.. .++...|||.||..||..|+..+ ..||+ ||..+...
T Consensus 178 ~~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 3566799999999983 44456899999999999999864 46999 99987643
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.56 E-value=4.4e-08 Score=68.46 Aligned_cols=49 Identities=27% Similarity=0.614 Sum_probs=37.4
Q ss_pred CCcccccccccccccCceeEEeCCC--C---cccHhhHHHHHhc--CCCCcccccccCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCL--H---QFHANCIDPWLRQ--RGTCPVCKFRMGS 263 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~--H---~Fh~~CI~~WL~~--~~~CP~CR~~i~~ 263 (279)
++...|.||+++.. +.. .+||. | .||..|+.+|+.. +.+||+||..+.-
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 34568999998743 333 58854 4 7999999999974 5789999998753
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.50 E-value=2.7e-08 Score=92.58 Aligned_cols=45 Identities=27% Similarity=0.685 Sum_probs=38.6
Q ss_pred CcccccccccccccCceeEEeCCCCc-ccHhhHHHHHhcCCCCcccccccCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQ-FHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~-Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
++..|+||++.+. .+..+||||. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 4568999999887 4567899999 999999988 7899999988643
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.42 E-value=9e-08 Score=67.07 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=41.4
Q ss_pred ccccccccccccCceeEEe-CCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 215 LTCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
..|+||++.+.. ...+ +|||.|...||.+|++.+++||+++.++....
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 479999999983 3456 79999999999999998889999999887554
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.14 E-value=1.7e-06 Score=65.97 Aligned_cols=49 Identities=27% Similarity=0.445 Sum_probs=39.8
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhc-CCCCcccccccCCCCC
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-RGTCPVCKFRMGSGWQ 266 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~~CP~CR~~i~~~~~ 266 (279)
-|.+|--.+. ...+.+||+|.||.+|+..|.++ .++||.|+.++..-.+
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 4888866655 46678999999999999999865 6889999999876543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.75 E-value=2e-05 Score=69.59 Aligned_cols=49 Identities=20% Similarity=0.517 Sum_probs=38.8
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhcCC--CCcccccccCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRG--TCPVCKFRMGSG 264 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~--~CP~CR~~i~~~ 264 (279)
...|.||.+.+..+. +.-.|+|.||..|+.+|++.+. .||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 568999999888653 2223999999999999998754 899998875543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.79 E-value=0.0028 Score=47.55 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=40.0
Q ss_pred CcccccccccccccCceeEEeCC-CCcccHhhHHHHHhcCCCCcccccccCCCCCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPC-LHQFHANCIDPWLRQRGTCPVCKFRMGSGWQE 267 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC-~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~~~ 267 (279)
....|..|+-..+ ..+.| .|.+|..|+.-.|+....||+|+.+++.+-..
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3457999986644 23456 69999999999999999999999999876543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.74 E-value=0.0054 Score=46.14 Aligned_cols=35 Identities=11% Similarity=0.452 Sum_probs=26.3
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHH
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPW 247 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~W 247 (279)
++..|.||.+.+.......-+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35689999987543333344889999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.35 E-value=0.078 Score=37.13 Aligned_cols=46 Identities=24% Similarity=0.492 Sum_probs=31.9
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcC----CCCccccccc
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQR----GTCPVCKFRM 261 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~----~~CP~CR~~i 261 (279)
....|.||.+. ++.+.--.|...||..|+.+.+... -.||.|+...
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34579999642 3333333489999999999888653 3599997643
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.49 E-value=0.16 Score=37.25 Aligned_cols=31 Identities=23% Similarity=0.674 Sum_probs=22.8
Q ss_pred CcccccccccccccCceeEEeC---CCCcccHhhHHHH
Q 048433 213 DELTCTICLEQVKCGELVRSLP---CLHQFHANCIDPW 247 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~Lp---C~H~Fh~~CI~~W 247 (279)
.+..|.||- .+..++ .+| |+-.||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccc---eeccccccccccHhhcccc
Confidence 456899994 444333 344 8999999999996
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.85 E-value=0.14 Score=35.13 Aligned_cols=49 Identities=22% Similarity=0.447 Sum_probs=33.1
Q ss_pred CCcccccccccccccCceeEEe-CCCCcccHhhHHHHHh-----cCCCCcccccc
Q 048433 212 EDELTCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLR-----QRGTCPVCKFR 260 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~-----~~~~CP~CR~~ 260 (279)
++...|+||...+..+..++.- .|...||..|+.--.. ..-.||.|+.+
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4556799998887644444433 3899999999864322 23459999653
No 78
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.39 E-value=1.4 Score=32.50 Aligned_cols=49 Identities=24% Similarity=0.391 Sum_probs=34.3
Q ss_pred ccccccccccccCc--ee--EEeCCCCcccHhhHHHHHh-cCCCCcccccccCC
Q 048433 215 LTCTICLEQVKCGE--LV--RSLPCLHQFHANCIDPWLR-QRGTCPVCKFRMGS 263 (279)
Q Consensus 215 ~~C~ICle~~~~~~--~v--~~LpC~H~Fh~~CI~~WL~-~~~~CP~CR~~i~~ 263 (279)
..|.||-+++.... .+ ..-.|+--.|..|..-=.+ .+..||.|+.++..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 47999998864322 11 1223777789999876554 47789999999873
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.20 E-value=0.18 Score=34.56 Aligned_cols=48 Identities=27% Similarity=0.632 Sum_probs=31.1
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccccccC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKFRMG 262 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~~i~ 262 (279)
..+..|.||.+. ++.+.--.|...||..|+.+-+.. .-.||.|+....
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 345679999752 333222238889999999865543 335999976543
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.74 E-value=0.46 Score=32.43 Aligned_cols=46 Identities=26% Similarity=0.761 Sum_probs=30.7
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccccc
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKFR 260 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~~ 260 (279)
.++..|.||.+. ++.+.--.|...||..|+..-+.. .-.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 345679999763 333332348889999999875543 3359999653
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=85.58 E-value=0.29 Score=34.69 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=34.0
Q ss_pred CcccccccccccccCceeEEe-CCCCcccHhhHHHHHhc----CCCCcccccccCCC
Q 048433 213 DELTCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLRQ----RGTCPVCKFRMGSG 264 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~~----~~~CP~CR~~i~~~ 264 (279)
+...|.||..... ++.+..- .|...||..|+..-... .-.||.|+..+...
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 4457999977654 3333333 38899999999765432 34599998876543
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.50 E-value=0.14 Score=34.44 Aligned_cols=45 Identities=31% Similarity=0.745 Sum_probs=29.5
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCccccc
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKF 259 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~ 259 (279)
.++..|.||... ++.+.--.|...||..|+.+-+.. .-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345679999763 333333348889999999865543 224888853
No 83
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.79 E-value=0.7 Score=47.96 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=42.8
Q ss_pred CCcccccccccccccCceeEEeCCC-CcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCL-HQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~-H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
-++..|||-++-+. +.+.+|.| +.|-..+|.+|+..+.+||.=|.++...
T Consensus 889 P~~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 45678999999988 45679987 5899999999999999999999988754
No 84
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=84.20 E-value=0.83 Score=33.18 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=27.9
Q ss_pred CcccccccccccccCceeEEeC--CCCcccHhhHHHHHhc
Q 048433 213 DELTCTICLEQVKCGELVRSLP--CLHQFHANCIDPWLRQ 250 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~Lp--C~H~Fh~~CI~~WL~~ 250 (279)
....|.+|.+.++.. ..+..| =.|.||..|-+..++.
T Consensus 14 a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 346899999998843 233344 3899999999999875
No 85
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.41 E-value=1.5 Score=32.50 Aligned_cols=46 Identities=28% Similarity=0.685 Sum_probs=27.8
Q ss_pred CcccccccccccccCceeEEeC--CC-CcccHhhHHHHHhc----CCCCcccccccC
Q 048433 213 DELTCTICLEQVKCGELVRSLP--CL-HQFHANCIDPWLRQ----RGTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~Lp--C~-H~Fh~~CI~~WL~~----~~~CP~CR~~i~ 262 (279)
+...| ||..... +..+..=. |. ..||..|+. |.. +-.||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 44556 9977543 33222222 55 689999997 332 345999976543
No 86
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.64 E-value=0.29 Score=36.37 Aligned_cols=50 Identities=24% Similarity=0.473 Sum_probs=32.4
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccccc
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKFR 260 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~~ 260 (279)
..++..|.||...-.....+..=.|...||..|+.+=+.. .-.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3455689999876433222222238999999999754433 3359999765
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=82.44 E-value=0.37 Score=33.42 Aligned_cols=45 Identities=33% Similarity=0.734 Sum_probs=30.2
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccccc
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKFR 260 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~~ 260 (279)
++..|.||.+. ++.+.-=.|...||..|+.+-+.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45679999753 333332348889999999865543 3359999654
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.84 E-value=1.9 Score=30.70 Aligned_cols=48 Identities=21% Similarity=0.535 Sum_probs=30.7
Q ss_pred cccccccccccccCceeEEe-CCCCcccHhhHHHHHh-----cCCCCcccccccC
Q 048433 214 ELTCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLR-----QRGTCPVCKFRMG 262 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~-----~~~~CP~CR~~i~ 262 (279)
...| ||...+.....++.- .|...||..|+.--.. ..-.||.|+..-.
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3456 998877533344333 3999999999853221 2446999987543
No 89
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.45 E-value=0.53 Score=39.10 Aligned_cols=47 Identities=30% Similarity=0.584 Sum_probs=31.8
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccccccC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~~i~ 262 (279)
++..|.||.+. |+.+..=.|...||..|+.+-+.. .-.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 34579999743 443332338889999999876654 335999987544
No 90
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.43 E-value=0.65 Score=30.21 Aligned_cols=44 Identities=27% Similarity=0.662 Sum_probs=27.9
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCccccc
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKF 259 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~ 259 (279)
.|.||...-..++.+.--.|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48889765333333322348889999999764433 234999964
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=80.40 E-value=0.56 Score=32.23 Aligned_cols=50 Identities=24% Similarity=0.495 Sum_probs=32.2
Q ss_pred Cccccccccccccc-CceeEEe-CCCCcccHhhHHHHHh-------cCCCCcccccccC
Q 048433 213 DELTCTICLEQVKC-GELVRSL-PCLHQFHANCIDPWLR-------QRGTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~-~~~v~~L-pC~H~Fh~~CI~~WL~-------~~~~CP~CR~~i~ 262 (279)
++..|.||...... +..+..- .|...||..|+.+-+. ..-.||.|+....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 45689999876432 2233332 3899999999886432 2346999976544
No 92
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=80.29 E-value=0.46 Score=34.98 Aligned_cols=56 Identities=16% Similarity=0.333 Sum_probs=34.6
Q ss_pred CCccccccccccc-ccCceeEEe-CCCCcccHhhHHHHHh--cCCCCcccccccCCCCCC
Q 048433 212 EDELTCTICLEQV-KCGELVRSL-PCLHQFHANCIDPWLR--QRGTCPVCKFRMGSGWQE 267 (279)
Q Consensus 212 ~e~~~C~ICle~~-~~~~~v~~L-pC~H~Fh~~CI~~WL~--~~~~CP~CR~~i~~~~~~ 267 (279)
+++..|.||...- ...+.+..- .|.-.||..|+..-+. ..-.||.|......+..+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC--
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhhh
Confidence 4556899998653 122233333 3888999999975432 234599998776665543
No 93
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=80.16 E-value=0.8 Score=38.38 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=34.7
Q ss_pred ccccccccccccCce---eEEeC-CCCcccHhhHHH------HHh-----cCCCCcccccccCCC
Q 048433 215 LTCTICLEQVKCGEL---VRSLP-CLHQFHANCIDP------WLR-----QRGTCPVCKFRMGSG 264 (279)
Q Consensus 215 ~~C~ICle~~~~~~~---v~~Lp-C~H~Fh~~CI~~------WL~-----~~~~CP~CR~~i~~~ 264 (279)
..|+||...+..++. ++.-. |...||..|+.- -+. ..-.||.|+..-+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~ 67 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE 67 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence 369999998887652 44444 999999999742 111 156799998766543
No 94
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.09 E-value=0.87 Score=32.26 Aligned_cols=48 Identities=25% Similarity=0.527 Sum_probs=30.3
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHH---------hcCCCCcccccccC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWL---------RQRGTCPVCKFRMG 262 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL---------~~~~~CP~CR~~i~ 262 (279)
...| ||......+..+..-.|...||..|+.--. ...-.||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3456 898776533333323499999999984211 23567999976543
No 95
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=79.49 E-value=0.8 Score=34.32 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=29.5
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc---CCCCccccc
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ---RGTCPVCKF 259 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~---~~~CP~CR~ 259 (279)
+...| ||-.....+..+..=.|.-.||..|+..=+.. .-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34557 89776554443333338999999998653332 335999974
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.40 E-value=1.2 Score=32.90 Aligned_cols=48 Identities=27% Similarity=0.651 Sum_probs=31.8
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccccccC
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKFRMG 262 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~~i~ 262 (279)
.++..|.||... ++.+..-.|--.||..|+.+=+.. .-.||.|+..-.
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 445689999753 333322238888999999876644 235999976533
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=78.85 E-value=0.19 Score=34.16 Aligned_cols=48 Identities=31% Similarity=0.715 Sum_probs=31.9
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~~i~~ 263 (279)
.+..|.||... ++.+.--.|...||..|+.+-+.. .-.||.|+.....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 34579999763 333333348889999999865543 3359999765543
No 98
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=77.74 E-value=0.7 Score=39.17 Aligned_cols=46 Identities=26% Similarity=0.529 Sum_probs=31.4
Q ss_pred CcccccccccccccCceeEEeC-CCCcccHhhHHHHHhc----CCCCcccccccC
Q 048433 213 DELTCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLRQ----RGTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~~----~~~CP~CR~~i~ 262 (279)
.+..|.+|... ++ +..-. |...||..|+.+-+.. .-.||.|+..-.
T Consensus 6 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 44579999643 33 33333 8899999999877654 335999986544
No 99
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=76.95 E-value=0.84 Score=34.68 Aligned_cols=46 Identities=22% Similarity=0.507 Sum_probs=29.9
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccc
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCK 258 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR 258 (279)
++..|.||.+.-+..+.+.--.|+..||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45689999765332222444459999999999877642 23477664
No 100
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=76.89 E-value=2.4 Score=25.69 Aligned_cols=21 Identities=29% Similarity=0.784 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHH
Q 048433 40 AFLVIVLLLFMILNSHQMSPNFLLWL 65 (279)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (279)
...+.++++||||.+ .||+|.
T Consensus 11 t~i~gl~vif~~lg~-----tflywr 31 (40)
T 2l9u_A 11 TVIAGLVVIFMMLGG-----TFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHhCc-----eeEEEc
Confidence 344455678888865 566664
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.64 E-value=0.28 Score=36.16 Aligned_cols=55 Identities=20% Similarity=0.430 Sum_probs=35.7
Q ss_pred CcccccccccccccC-ceeEEeC-CCCcccHhhHHHHHh--------cCCCCcccccccCCCCCC
Q 048433 213 DELTCTICLEQVKCG-ELVRSLP-CLHQFHANCIDPWLR--------QRGTCPVCKFRMGSGWQE 267 (279)
Q Consensus 213 e~~~C~ICle~~~~~-~~v~~Lp-C~H~Fh~~CI~~WL~--------~~~~CP~CR~~i~~~~~~ 267 (279)
++..|.||...-... +.+..-. |...||..|+.+-+. ..-.|+.|+.......+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~ 79 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQK 79 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhccc
Confidence 345799998754322 2333333 899999999987553 234699998776655443
No 102
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=75.62 E-value=2.6 Score=30.89 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCcccccccccccccCc-eeEEeCCCCcccHhhHHHHHh-------cCCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLR-------QRGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~-------~~~~CP~CR~~i~~~~ 265 (279)
++...|.+|...|..-. ..-.-.||++||..|...... ....|-.|-..+....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcc
Confidence 34557999999887432 122245999999999765431 2234888866655443
No 103
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=75.05 E-value=2.3 Score=29.89 Aligned_cols=46 Identities=28% Similarity=0.685 Sum_probs=27.7
Q ss_pred CcccccccccccccCceeEEeC--CC-CcccHhhHHHHHhc----CCCCcccccccC
Q 048433 213 DELTCTICLEQVKCGELVRSLP--CL-HQFHANCIDPWLRQ----RGTCPVCKFRMG 262 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~Lp--C~-H~Fh~~CI~~WL~~----~~~CP~CR~~i~ 262 (279)
+...| ||..... +..+.-=. |. ..||..|+. |.. +-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 44567 8977533 33222222 55 689999997 433 335999976543
No 104
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=71.63 E-value=3.6 Score=38.15 Aligned_cols=46 Identities=26% Similarity=0.461 Sum_probs=30.6
Q ss_pred ccccccccccccCceeEEeCCCCcccHhh--HHHHHhc--CCCCcccccccC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANC--IDPWLRQ--RGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~C--I~~WL~~--~~~CP~CR~~i~ 262 (279)
+.|+|-...+. ..++...|.|.-|.+- +.....+ .-.||+|...+.
T Consensus 250 L~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 57998888777 4567778999855543 2222223 446999988763
No 105
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=71.09 E-value=0.94 Score=34.41 Aligned_cols=48 Identities=19% Similarity=0.330 Sum_probs=32.3
Q ss_pred ccccccccccccCceeEEe--CCCCcccHhhHHHHH---h-------cCCCCcccccccC
Q 048433 215 LTCTICLEQVKCGELVRSL--PCLHQFHANCIDPWL---R-------QRGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~L--pC~H~Fh~~CI~~WL---~-------~~~~CP~CR~~i~ 262 (279)
..|.||...+........- .|...||..|+.--- + .+-.||.|+..-.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4799999987654444443 488899999974211 0 2446999987544
No 106
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.81 E-value=4.8 Score=30.54 Aligned_cols=44 Identities=30% Similarity=0.561 Sum_probs=27.2
Q ss_pred cccccccccc------ccCceeEEeCCCCcccHhhHHH------HH-hcCCCCcccc
Q 048433 215 LTCTICLEQV------KCGELVRSLPCLHQFHANCIDP------WL-RQRGTCPVCK 258 (279)
Q Consensus 215 ~~C~ICle~~------~~~~~v~~LpC~H~Fh~~CI~~------WL-~~~~~CP~CR 258 (279)
..|.+|+..- ..++.+.--.|+..||..|+.. .+ +..-.||.|+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4699998752 1123333345999999999952 12 2344577775
No 107
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=69.79 E-value=4.3 Score=37.51 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=30.7
Q ss_pred ccccccccccccCceeEEeCCCCcccHh--hHHHHHhc--CCCCcccccccC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHAN--CIDPWLRQ--RGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~--CI~~WL~~--~~~CP~CR~~i~ 262 (279)
..|+|-...+. ..++...|.|.-|.+ -+.....+ .-.||+|...+.
T Consensus 216 L~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 57998888877 456777899984443 23332233 346999998775
No 108
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=69.58 E-value=1.2 Score=36.51 Aligned_cols=47 Identities=21% Similarity=0.543 Sum_probs=30.6
Q ss_pred CcccccccccccccCceeEEe-CCCCcccHhhHHHHHh-----cCCCCcccccc
Q 048433 213 DELTCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLR-----QRGTCPVCKFR 260 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~-----~~~~CP~CR~~ 260 (279)
+...| ||......+..+..- .|...||..|+.--.. ..-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45578 998876544334333 3899999999853211 24469999764
No 109
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=69.04 E-value=3.6 Score=28.38 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=23.6
Q ss_pred CcccccccccccccCceeEEe--CCCCcccHhhHH
Q 048433 213 DELTCTICLEQVKCGELVRSL--PCLHQFHANCID 245 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L--pC~H~Fh~~CI~ 245 (279)
....|++|...+......+.- .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 445799999988765544443 488899999964
No 110
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=67.57 E-value=5.8 Score=31.74 Aligned_cols=45 Identities=27% Similarity=0.490 Sum_probs=30.4
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHh-----------cCCCCccccc
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR-----------QRGTCPVCKF 259 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~-----------~~~~CP~CR~ 259 (279)
..+..|.||-+. |+.+..=.|-..||..||.+-+. ..-.||.|+.
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345689999653 43333334888999999997662 1335999964
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=65.92 E-value=2.5 Score=30.11 Aligned_cols=50 Identities=16% Similarity=0.464 Sum_probs=30.6
Q ss_pred CcccccccccccccCceeEEe--CCCCcccHhhHHHHHh---------cCCCCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSL--PCLHQFHANCIDPWLR---------QRGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L--pC~H~Fh~~CI~~WL~---------~~~~CP~CR~~i~~ 263 (279)
+...| ||-.....+..+..= .|...||..|+.---. .+-.||.|+..-.+
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 34567 897764444333323 4999999999853211 24469999765443
No 112
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=65.30 E-value=4 Score=28.38 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=24.4
Q ss_pred CCcccccccccccccCceeEEeCC-CCcccHhhHHHH
Q 048433 212 EDELTCTICLEQVKCGELVRSLPC-LHQFHANCIDPW 247 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC-~H~Fh~~CI~~W 247 (279)
++..-|.||.++ ..++.+.| +-.||..|.+.-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 445679999887 34677889 789999996664
No 113
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.95 E-value=1.8 Score=32.95 Aligned_cols=44 Identities=32% Similarity=0.618 Sum_probs=28.3
Q ss_pred cccccccccccCceeEE-eCCCCcccHhhHHHHHhc----CCCCccccc
Q 048433 216 TCTICLEQVKCGELVRS-LPCLHQFHANCIDPWLRQ----RGTCPVCKF 259 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~-LpC~H~Fh~~CI~~WL~~----~~~CP~CR~ 259 (279)
.|.||.+.-...+.+.. -.|...||..|+.+-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 68888764222223322 238999999999765543 235999974
No 114
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=64.30 E-value=1.9 Score=30.40 Aligned_cols=49 Identities=16% Similarity=0.411 Sum_probs=30.4
Q ss_pred CCccccccccccc-ccCceeEEe-CCCCcccHhhHHHHHh--cCCCCcccccc
Q 048433 212 EDELTCTICLEQV-KCGELVRSL-PCLHQFHANCIDPWLR--QRGTCPVCKFR 260 (279)
Q Consensus 212 ~e~~~C~ICle~~-~~~~~v~~L-pC~H~Fh~~CI~~WL~--~~~~CP~CR~~ 260 (279)
.++..|.||.+.- ..++.+..- .|.-.||..|+..-.. ..-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3456899997653 222333333 3888999999875322 23358888653
No 115
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=63.41 E-value=2.8 Score=27.37 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=28.0
Q ss_pred cccccccccccCceeEEe--CCCCcccHhhHHHHH----hcCCCCcccc
Q 048433 216 TCTICLEQVKCGELVRSL--PCLHQFHANCIDPWL----RQRGTCPVCK 258 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~L--pC~H~Fh~~CI~~WL----~~~~~CP~CR 258 (279)
.|.||...+..+...+.- .|...||..|+.--. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588998887654444333 488899999965321 2456699885
No 116
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=61.63 E-value=1.8 Score=30.12 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=28.7
Q ss_pred CCcccccccccccccCceeEE-eCCCCcccHhhHHHHHh---cCCCCccccc
Q 048433 212 EDELTCTICLEQVKCGELVRS-LPCLHQFHANCIDPWLR---QRGTCPVCKF 259 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~-LpC~H~Fh~~CI~~WL~---~~~~CP~CR~ 259 (279)
.+...| ||-.... ++.++. -.|...||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345568 9987655 333333 33999999999854221 2345888853
No 117
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=61.52 E-value=5.7 Score=28.42 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=31.7
Q ss_pred CcccccccccccccCc-eeEEeCCCCcccHhhHHHHHh------cCCCCcccccccCCCC
Q 048433 213 DELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLR------QRGTCPVCKFRMGSGW 265 (279)
Q Consensus 213 e~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~------~~~~CP~CR~~i~~~~ 265 (279)
+...|.+|...|..-. ...--.||.+||..|....+. ....|-.|-..+....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~~~ 77 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQRC 77 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC--
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHHhc
Confidence 3457999999887432 122234999999999765431 1123777755554433
No 118
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=61.38 E-value=8.4 Score=27.64 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=24.7
Q ss_pred CcccccccccccccCc-eeEEeCCCCcccHhhHHHH
Q 048433 213 DELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPW 247 (279)
Q Consensus 213 e~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~W 247 (279)
+...|.+|...|..-. ...--.||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4457999999987432 1222349999999997654
No 119
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=61.27 E-value=0.76 Score=31.35 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=29.9
Q ss_pred CCcccccccccc-cccCceeEEeCCCCcccHhhHHHHHhc-CCC---Cccccc
Q 048433 212 EDELTCTICLEQ-VKCGELVRSLPCLHQFHANCIDPWLRQ-RGT---CPVCKF 259 (279)
Q Consensus 212 ~e~~~C~ICle~-~~~~~~v~~LpC~H~Fh~~CI~~WL~~-~~~---CP~CR~ 259 (279)
.+...|.||+.. |..+......-|.-.||..|.-.|-.+ ++. |-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 345689999874 555544334447777888887666432 332 777764
No 120
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.20 E-value=5 Score=31.26 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=23.6
Q ss_pred cccccccccccccCc-eeEEeCCCCcccHhhHHHH
Q 048433 214 ELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPW 247 (279)
Q Consensus 214 ~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~W 247 (279)
...|.+|...|..-. ....-.||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 347999999887332 1223359999999996543
No 121
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.81 E-value=1.9 Score=30.21 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=30.4
Q ss_pred CcccccccccccccCceeEEe-CCCCcccHhhHHHHH----hcCCCCccccccc
Q 048433 213 DELTCTICLEQVKCGELVRSL-PCLHQFHANCIDPWL----RQRGTCPVCKFRM 261 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL----~~~~~CP~CR~~i 261 (279)
+...| ||-.....++.++.- .|...||..|+.--. ...-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34568 798766545434333 388899999975432 1234599997643
No 122
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=60.67 E-value=4.1 Score=33.94 Aligned_cols=45 Identities=29% Similarity=0.671 Sum_probs=29.9
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccccccC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~~i~ 262 (279)
..|.+|.+. ++.+..-.|-..||..|+.+=+.. .-.||.|+..-.
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 469999743 443333348888999999765543 235999987643
No 123
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=60.22 E-value=1.4 Score=34.47 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=29.8
Q ss_pred cccccccccccccCc-eeEEeCCCCcccHhhHHHHHhcCCCCcccccc
Q 048433 214 ELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLRQRGTCPVCKFR 260 (279)
Q Consensus 214 ~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~ 260 (279)
...|..|-..|..-. ....-.||.+||..|..........|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 347999999886322 22334599999999977665556668777543
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=59.57 E-value=5.8 Score=28.96 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=31.4
Q ss_pred cccccccccccccCc-eeEEeCCCCcccHhhHHHHHh------cCCCCcccccccC
Q 048433 214 ELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLR------QRGTCPVCKFRMG 262 (279)
Q Consensus 214 ~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~------~~~~CP~CR~~i~ 262 (279)
...|.+|...|..-. ....-.||++||..|...+.. ....|-.|-..+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 457999999887432 222345999999999876542 1234766655444
No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=59.35 E-value=8.4 Score=29.25 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=30.4
Q ss_pred CCcccccccccccccCceeEEe---CCCCcccHhhHHHHHhc----CCCCcccccccCCCC
Q 048433 212 EDELTCTICLEQVKCGELVRSL---PCLHQFHANCIDPWLRQ----RGTCPVCKFRMGSGW 265 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~L---pC~H~Fh~~CI~~WL~~----~~~CP~CR~~i~~~~ 265 (279)
.++..|.+|.+ .+ .+..- .|-..||..|+. |.. .-.||.|+..+..+.
T Consensus 13 ~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 13 MHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp SSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCC
Confidence 45567999973 23 33333 377899999997 543 224888876555443
No 126
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=58.77 E-value=2.2 Score=41.06 Aligned_cols=45 Identities=18% Similarity=0.449 Sum_probs=28.8
Q ss_pred cccccccccccCceeEEeC-CCCcccHhhHHHHHh-----cCCCCcccccc
Q 048433 216 TCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLR-----QRGTCPVCKFR 260 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~-----~~~~CP~CR~~ 260 (279)
..+||...+..+..+.... |.-.||..|+.---. ..-.||.|+..
T Consensus 38 ~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3349988765344444433 999999999843222 13459999854
No 127
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=58.59 E-value=3.6 Score=30.95 Aligned_cols=12 Identities=42% Similarity=1.204 Sum_probs=10.8
Q ss_pred ccHhhHHHHHhc
Q 048433 239 FHANCIDPWLRQ 250 (279)
Q Consensus 239 Fh~~CI~~WL~~ 250 (279)
||.+|+.+|++.
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999963
No 128
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=58.39 E-value=3.7 Score=30.87 Aligned_cols=11 Identities=45% Similarity=1.174 Sum_probs=10.4
Q ss_pred ccHhhHHHHHh
Q 048433 239 FHANCIDPWLR 249 (279)
Q Consensus 239 Fh~~CI~~WL~ 249 (279)
||.+|+.+|++
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 129
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.23 E-value=11 Score=29.51 Aligned_cols=46 Identities=26% Similarity=0.488 Sum_probs=29.5
Q ss_pred CCCcccccccccccccCceeEEeCCCCcccHhhHHHHH------h-----cCCCCccccc
Q 048433 211 SEDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWL------R-----QRGTCPVCKF 259 (279)
Q Consensus 211 ~~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL------~-----~~~~CP~CR~ 259 (279)
+..+..|.||-+. ++.+.-=.|-..||..||.+-+ + ..-.|+.|+-
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3445679999653 3322222388899999999752 1 1246999954
No 130
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=57.06 E-value=7.5 Score=27.12 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=22.5
Q ss_pred ccccccccccccCc-eeEEeCCCCcccHhhHHH
Q 048433 215 LTCTICLEQVKCGE-LVRSLPCLHQFHANCIDP 246 (279)
Q Consensus 215 ~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~ 246 (279)
..|.+|...|..-. ..---.||++||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 47999999887332 122234999999999754
No 131
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.54 E-value=7.3 Score=27.94 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=23.4
Q ss_pred CcccccccccccccCc-eeEEeCCCCcccHhhHHH
Q 048433 213 DELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDP 246 (279)
Q Consensus 213 e~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~ 246 (279)
+...|.+|...|..-. ..---.||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3457999999886322 122245999999999654
No 132
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.69 E-value=5.6 Score=33.74 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=23.4
Q ss_pred ccccccccccccCc-eeEEeCCCCcccHhhHHHH
Q 048433 215 LTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPW 247 (279)
Q Consensus 215 ~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~W 247 (279)
..|.+|...|..-. ....-.||+.||..|....
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 47999999886332 2223449999999997654
No 133
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=55.03 E-value=5.1 Score=27.22 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=27.8
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCccc
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVC 257 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~C 257 (279)
.|--|...+.......--.|++.||.+|=.-.-..-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 599998888533212222399999999954333445579988
No 134
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.83 E-value=11 Score=32.05 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=31.8
Q ss_pred ccccccccccccCc-eeEEeCCCCcccHhhHHHHHh--------cCCCCcccccccCCC
Q 048433 215 LTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLR--------QRGTCPVCKFRMGSG 264 (279)
Q Consensus 215 ~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~--------~~~~CP~CR~~i~~~ 264 (279)
..|.+|...|..-. ....-.||+.||..|-..... ....|-.|-..+..+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~ 223 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRK 223 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC-
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhh
Confidence 47999999887432 222345999999999775432 123477776555443
No 135
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=54.33 E-value=2.4 Score=30.34 Aligned_cols=44 Identities=27% Similarity=0.593 Sum_probs=27.1
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhc----C-CCCccccc
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----R-GTCPVCKF 259 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~-~~CP~CR~ 259 (279)
.|.||...-..+..+.-=.|...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 57777654333222222238889999999876643 2 46999875
No 136
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=52.28 E-value=7.1 Score=30.86 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=29.3
Q ss_pred Ccccccccccccc-c-CceeEEeCCCCcccHhhHHHHHhc----CCCCccccc
Q 048433 213 DELTCTICLEQVK-C-GELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKF 259 (279)
Q Consensus 213 e~~~C~ICle~~~-~-~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~ 259 (279)
++..|.+|...|. . +.......|.|.+|..|-..-... .-.|-+|+.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 3468999999983 2 223344559999999996532111 112777754
No 137
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=52.15 E-value=5.2 Score=34.53 Aligned_cols=45 Identities=27% Similarity=0.574 Sum_probs=25.9
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhc-----CCCCccccc
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-----RGTCPVCKF 259 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-----~~~CP~CR~ 259 (279)
..|.+|...-..+..+..=.|...||..|+.+=|.. .-.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 368899764333333222238899999999865543 235999964
No 138
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=51.97 E-value=3.4 Score=27.89 Aligned_cols=43 Identities=30% Similarity=0.709 Sum_probs=25.7
Q ss_pred CcccccccccccccCceeEEeC--CC-CcccHhhHHHHHhc----CCCCccccc
Q 048433 213 DELTCTICLEQVKCGELVRSLP--CL-HQFHANCIDPWLRQ----RGTCPVCKF 259 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~Lp--C~-H~Fh~~CI~~WL~~----~~~CP~CR~ 259 (279)
+...| ||..... ++.+.-=. |. ..||..|+. +.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34456 9977532 33222223 55 689999997 433 335999964
No 139
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=51.21 E-value=1.3 Score=33.97 Aligned_cols=49 Identities=18% Similarity=0.465 Sum_probs=31.6
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccccccCCC
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKFRMGSG 264 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~~i~~~ 264 (279)
.|.||...-..++.+.--.|...||..|+.+=+.. .-.||.|+..+.++
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 58888765443433333348999999999864443 23499997765543
No 140
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=50.65 E-value=3.5 Score=27.82 Aligned_cols=42 Identities=29% Similarity=0.684 Sum_probs=24.7
Q ss_pred cccccccccccccCceeEEeC--CC-CcccHhhHHHHHhc----CCCCccccc
Q 048433 214 ELTCTICLEQVKCGELVRSLP--CL-HQFHANCIDPWLRQ----RGTCPVCKF 259 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~Lp--C~-H~Fh~~CI~~WL~~----~~~CP~CR~ 259 (279)
...| ||..... +..+.-=. |. ..||..|+. +.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 9977532 33222112 54 689999997 443 335999864
No 141
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.68 E-value=4.3 Score=28.94 Aligned_cols=45 Identities=24% Similarity=0.539 Sum_probs=28.4
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhc-----CCCCccccc
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ-----RGTCPVCKF 259 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~-----~~~CP~CR~ 259 (279)
..|.||...-..++.+.-=.|...||..|+.+=|.. .-.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378899764333333322238899999999864432 235888864
No 142
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=48.27 E-value=4.3 Score=28.33 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=26.8
Q ss_pred cccccccccccCceeEEe-CCCCcccHhhHHHHHhc-----CCCCccccc
Q 048433 216 TCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLRQ-----RGTCPVCKF 259 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~~-----~~~CP~CR~ 259 (279)
.|.||...-..+ .+..- .|...||..|+.+=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 567886543333 33232 38899999999865442 235999864
No 143
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=47.92 E-value=3.8 Score=37.93 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred cccccccccccccCc-eeEEeCCCCcccHhhHHHHHh-------cCCCCccccccc
Q 048433 214 ELTCTICLEQVKCGE-LVRSLPCLHQFHANCIDPWLR-------QRGTCPVCKFRM 261 (279)
Q Consensus 214 ~~~C~ICle~~~~~~-~v~~LpC~H~Fh~~CI~~WL~-------~~~~CP~CR~~i 261 (279)
...|.+|...|..-. ....-.||+.||..|...+.. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 457999998886321 122345999999999977652 123477775544
No 144
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.89 E-value=12 Score=28.36 Aligned_cols=43 Identities=30% Similarity=0.576 Sum_probs=26.6
Q ss_pred ccccccccccc-------CceeEEeCCCCcccHhhHHHHH------h-cCCCCcccc
Q 048433 216 TCTICLEQVKC-------GELVRSLPCLHQFHANCIDPWL------R-QRGTCPVCK 258 (279)
Q Consensus 216 ~C~ICle~~~~-------~~~v~~LpC~H~Fh~~CI~~WL------~-~~~~CP~CR 258 (279)
.|.||+..-.. ++.+.--.|+..||..|+.... + ..-.||.|+
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 59999875411 1233334599999999987542 2 244577763
No 145
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=44.30 E-value=9.9 Score=26.60 Aligned_cols=48 Identities=19% Similarity=0.423 Sum_probs=30.1
Q ss_pred cccccccccccCceeEEe-CCCCcccHhhHHHHHh-----cCCCCcccccccCC
Q 048433 216 TCTICLEQVKCGELVRSL-PCLHQFHANCIDPWLR-----QRGTCPVCKFRMGS 263 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~L-pC~H~Fh~~CI~~WL~-----~~~~CP~CR~~i~~ 263 (279)
.-.||-..+..+..++.- .|.-.||..|+.---. ..-.||.|+..-..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCC
T ss_pred eEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCC
Confidence 445898766543344333 3898999999853321 23459999765443
No 146
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.98 E-value=3.5 Score=27.96 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=24.0
Q ss_pred ccccccccccccCce--eEE-eC--CCCcccHhhHHHHHhcC
Q 048433 215 LTCTICLEQVKCGEL--VRS-LP--CLHQFHANCIDPWLRQR 251 (279)
Q Consensus 215 ~~C~ICle~~~~~~~--v~~-Lp--C~H~Fh~~CI~~WL~~~ 251 (279)
..||-|...++..+. ..+ .. |++.||..|..+|-...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 368888777765432 112 22 78889988888886543
No 147
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.99 E-value=31 Score=23.44 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=28.5
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
..|..|-+.+..++.+. .-+..||.+|. .|..|+..+...
T Consensus 10 ~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVS--SLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CBCTTTCCBCCTTTEEE--ETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCcCCCCEeECCeEEE--ECCeEeeCCCC--------CCCCCCCccCCC
Confidence 46999988887655433 35778888774 488888887754
No 148
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.83 E-value=71 Score=22.31 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=28.0
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
...|.-|-+.+.. .. ...-+..||.+|. .|-.|+..+...
T Consensus 25 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AV--VKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS-CC--EESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEecc-cE--EEECCceECccCC--------EecCCCCCCCCC
Confidence 3479999888773 22 2346788998884 488888888653
No 149
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=41.80 E-value=6.5 Score=23.66 Aligned_cols=15 Identities=13% Similarity=0.667 Sum_probs=10.8
Q ss_pred CcccccccccccccC
Q 048433 213 DELTCTICLEQVKCG 227 (279)
Q Consensus 213 e~~~C~ICle~~~~~ 227 (279)
+...||||+.++...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 346899998877643
No 150
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=41.29 E-value=6 Score=29.76 Aligned_cols=45 Identities=18% Similarity=0.545 Sum_probs=28.0
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhc----CCCCcccccc
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQ----RGTCPVCKFR 260 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~----~~~CP~CR~~ 260 (279)
.|.||...-.....+.--.|...||..|+.+=+.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57788655332222222338999999999865543 3359988554
No 151
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.77 E-value=36 Score=23.62 Aligned_cols=41 Identities=24% Similarity=0.604 Sum_probs=28.6
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
...|.-|-+.+..++.+.. -+..||.+|. .|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~~~ 55 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILTGE 55 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCSSC
T ss_pred CCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcCCC
Confidence 3479999888875554333 4677888773 588898888643
No 152
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=39.41 E-value=20 Score=33.39 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=30.0
Q ss_pred CCcccccccccccccCceeEEe--CCCCcccHhhHHHHHh----------cCCCCccccc
Q 048433 212 EDELTCTICLEQVKCGELVRSL--PCLHQFHANCIDPWLR----------QRGTCPVCKF 259 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~L--pC~H~Fh~~CI~~WL~----------~~~~CP~CR~ 259 (279)
..+..|.||-+. ++.+..= .|...||..||+.++. ..-.|=+|.-
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 345679999653 3333333 4889999999999982 1335888853
No 153
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.62 E-value=19 Score=29.00 Aligned_cols=46 Identities=20% Similarity=0.449 Sum_probs=30.1
Q ss_pred Ccccccccccccc--cCceeEEeCCCCcccHhhHHHHHhcCC--CCccccc
Q 048433 213 DELTCTICLEQVK--CGELVRSLPCLHQFHANCIDPWLRQRG--TCPVCKF 259 (279)
Q Consensus 213 e~~~C~ICle~~~--~~~~v~~LpC~H~Fh~~CI~~WL~~~~--~CP~CR~ 259 (279)
++..|.+|...|. .+.......|.|.+|..|- .|.+... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 4568999999864 2233444569999999997 2443322 3777754
No 154
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=37.36 E-value=2.5 Score=31.72 Aligned_cols=40 Identities=20% Similarity=0.453 Sum_probs=24.8
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~ 262 (279)
..||+|..++... =++.+|..|-.. ++....||-|.+++.
T Consensus 33 ~~CP~Cq~eL~~~-------g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQD-------NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEE-------TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceec-------CCEEECccccch-hhccccCcchhhHHH
Confidence 5899998876532 133346666432 344566999987764
No 155
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=37.15 E-value=24 Score=28.73 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=23.7
Q ss_pred CCcccccccccccccCceeEEe---CCCCcccHhhHHHHHh
Q 048433 212 EDELTCTICLEQVKCGELVRSL---PCLHQFHANCIDPWLR 249 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~L---pC~H~Fh~~CI~~WL~ 249 (279)
..+..|.||-+. + .+..- .|-..||.+||+.++.
T Consensus 77 G~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 77 GYQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SSBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcC
Confidence 345679999653 2 33332 3888999999999974
No 156
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.70 E-value=22 Score=24.26 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=22.0
Q ss_pred CcccccccccccccCceeEEeCCCCcccH-hhHHHHHhcCCCCcccc
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHA-NCIDPWLRQRGTCPVCK 258 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~-~CI~~WL~~~~~CP~CR 258 (279)
+-..|..|-..+..+.- ...=+..||. .|..+. ....|-.|.
T Consensus 26 ~CF~C~~C~~~L~~~~~--~~~~g~~yC~~~cy~~~--f~~~C~~C~ 68 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGH--AEHEGKPYCNHPCYSAM--FGPKGFGRG 68 (76)
T ss_dssp TTCBCTTTCCBCCTTTE--EEETTEEEETTTHHHHH--SSCCCSSCC
T ss_pred CCCCccccCccCCCCce--ECcCCeEeeCHHHHHHH--hCccCCCcC
Confidence 34567777666654321 1223556666 465442 344566664
No 157
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.63 E-value=45 Score=22.83 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=25.1
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMG 262 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~ 262 (279)
..|.-|-+.+.. . ....-+..||.+|. .|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 16 PMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 469999887763 2 22335778888874 4777877764
No 158
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=36.22 E-value=8.3 Score=26.18 Aligned_cols=41 Identities=29% Similarity=0.671 Sum_probs=25.0
Q ss_pred cccccccccccccCceeEEe-C--CC-CcccHhhHHHHHhc----CCCCccccc
Q 048433 214 ELTCTICLEQVKCGELVRSL-P--CL-HQFHANCIDPWLRQ----RGTCPVCKF 259 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~L-p--C~-H~Fh~~CI~~WL~~----~~~CP~CR~ 259 (279)
...| ||..... +. +..- . |. ..||..|+. |.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3456 9977532 33 3222 2 54 789999987 332 345999964
No 159
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=33.18 E-value=9.9 Score=27.95 Aligned_cols=44 Identities=30% Similarity=0.571 Sum_probs=25.5
Q ss_pred CcccccccccccccCceeEEeCCC---CcccHhhHHHHHhc----CCCCcc-cccc
Q 048433 213 DELTCTICLEQVKCGELVRSLPCL---HQFHANCIDPWLRQ----RGTCPV-CKFR 260 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~---H~Fh~~CI~~WL~~----~~~CP~-CR~~ 260 (279)
+...| ||-.... ++.+..=.|. ..||..|+. |.. .-.||. |+..
T Consensus 25 ~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKEI 76 (90)
T ss_dssp CSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHHH
T ss_pred CCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcch
Confidence 34457 9976432 3322222244 689999985 322 345999 9753
No 160
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=33.16 E-value=13 Score=21.34 Aligned_cols=11 Identities=27% Similarity=1.050 Sum_probs=7.3
Q ss_pred CCcccccccCC
Q 048433 253 TCPVCKFRMGS 263 (279)
Q Consensus 253 ~CP~CR~~i~~ 263 (279)
.||+|+...++
T Consensus 5 ~CpvCk~q~Pd 15 (28)
T 2jvx_A 5 CCPKCQYQAPD 15 (28)
T ss_dssp ECTTSSCEESS
T ss_pred cCccccccCcC
Confidence 47777776654
No 161
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.96 E-value=56 Score=22.61 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=28.6
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSGW 265 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~~ 265 (279)
..|..|-..+...+.+. .-+..||.+|. .|-.|+..+....
T Consensus 16 ~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 16 DLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp CBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 47999988876554432 35778888883 4888888776654
No 162
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.71 E-value=33 Score=25.78 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=34.9
Q ss_pred ccccccccccccc-CceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 214 ELTCTICLEQVKC-GELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 214 ~~~C~ICle~~~~-~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
-..|..|-..+.. +.. -...=|..||..|..+.+..+..|..|...|...
T Consensus 32 CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HHCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 4678888777752 111 1223567799999888776666899999988864
No 163
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=30.53 E-value=4.4 Score=28.90 Aligned_cols=15 Identities=20% Similarity=0.574 Sum_probs=13.1
Q ss_pred CCCCcccHhhHHHHH
Q 048433 234 PCLHQFHANCIDPWL 248 (279)
Q Consensus 234 pC~H~Fh~~CI~~WL 248 (279)
.|+|.||..|...|=
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 499999999998883
No 164
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.12 E-value=62 Score=22.70 Aligned_cols=40 Identities=20% Similarity=0.477 Sum_probs=27.7
Q ss_pred cccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 214 ELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 214 ~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
...|..|-+.+. ++.+ ..-+..||.+|. .|-.|+..+...
T Consensus 25 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFL--VALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCC-SCEE--EETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCccCCCEec-ceEE--EECCccccccCC--------ccCCCCCCCCCC
Confidence 347999988875 3322 335788888874 588898888753
No 165
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=29.91 E-value=96 Score=23.14 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=26.4
Q ss_pred CCcccccccccccccCceeEEeCCCCcccHhhHHHHHh
Q 048433 212 EDELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLR 249 (279)
Q Consensus 212 ~e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~ 249 (279)
.+...|..|-..+..++... ..=+..||..|..+.+.
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHHH
T ss_pred cccCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHhc
Confidence 35678999988886554332 33577899999988874
No 166
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.83 E-value=1.5e+02 Score=20.93 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 048433 60 NFLLWLVVGVFLIATSLRMYATCQQLQAQ 88 (279)
Q Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~lq~~ 88 (279)
+++++++..+++..+=-|.|++.+.-+..
T Consensus 25 Gllllliwk~~~~i~DrrE~~kFEkE~~~ 53 (79)
T 2knc_B 25 GLAALLIWKLLITIHDRKEFAKFEEERAR 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666777888888999999966543
No 167
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.65 E-value=8.8 Score=29.14 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=15.2
Q ss_pred eCCCCcccHhhHHHHHhcCCCCccccccc
Q 048433 233 LPCLHQFHANCIDPWLRQRGTCPVCKFRM 261 (279)
Q Consensus 233 LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i 261 (279)
..||+.|. .-+.....||.|+..-
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 45999981 1123356799997653
No 168
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.47 E-value=3.5 Score=29.87 Aligned_cols=10 Identities=30% Similarity=0.999 Sum_probs=5.9
Q ss_pred cccccccccc
Q 048433 216 TCTICLEQVK 225 (279)
Q Consensus 216 ~C~ICle~~~ 225 (279)
.||.|...+.
T Consensus 4 ~CP~C~~~l~ 13 (81)
T 2jrp_A 4 TCPVCHHALE 13 (81)
T ss_dssp CCSSSCSCCE
T ss_pred CCCCCCCccc
Confidence 5666665554
No 169
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=27.26 E-value=14 Score=34.97 Aligned_cols=47 Identities=19% Similarity=0.436 Sum_probs=30.5
Q ss_pred cccccccccccCceeEEeC-CCCcccHhhHHHHHh-----cCCCCcccccccC
Q 048433 216 TCTICLEQVKCGELVRSLP-CLHQFHANCIDPWLR-----QRGTCPVCKFRMG 262 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~Lp-C~H~Fh~~CI~~WL~-----~~~~CP~CR~~i~ 262 (279)
.++||...+..+..+.... |.-.||..|+.---. .+-.||.|+....
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 5669987765444444443 999999999842111 2456999977544
No 170
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=26.62 E-value=82 Score=23.37 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=19.1
Q ss_pred CCCcccHhhHH------HHHhc-----CCCCcccccccCCC
Q 048433 235 CLHQFHANCID------PWLRQ-----RGTCPVCKFRMGSG 264 (279)
Q Consensus 235 C~H~Fh~~CI~------~WL~~-----~~~CP~CR~~i~~~ 264 (279)
|++.||..|+. +-+.+ ...||.|...-...
T Consensus 8 c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~~~ 48 (140)
T 2ku7_A 8 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHVDG 48 (140)
T ss_dssp CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSCCC
T ss_pred CCCccCCcccccCHHHHHHHhhccccceeeCccccccccCC
Confidence 88899999952 22222 35699996544433
No 171
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.32 E-value=45 Score=19.19 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=16.6
Q ss_pred cccccchhHHHHHHHHHHHHHhcCC
Q 048433 32 RPVNVNSLAFLVIVLLLFMILNSHQ 56 (279)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (279)
|..=.|..+.||++++...+.-|-|
T Consensus 6 qELf~NFt~vLI~vlLi~llVrsyq 30 (31)
T 1jdm_A 6 RELFLNFTIVLITVILMWLLVRSYQ 30 (31)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455677778888877776665533
No 172
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.13 E-value=57 Score=21.56 Aligned_cols=41 Identities=27% Similarity=0.478 Sum_probs=25.5
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
..|.-|-+.+...+.+ ...-+..||.+|. .|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCCC
Confidence 3688887777653222 2235677887773 477777776643
No 173
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=24.74 E-value=50 Score=24.82 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=27.3
Q ss_pred CcccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 213 DELTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 213 e~~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
+-..|..|-..+......-...=|..||..|..+-+.....|..|...|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 345677776666421111112235567777766544333367777776654
No 174
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.58 E-value=58 Score=21.53 Aligned_cols=40 Identities=20% Similarity=0.477 Sum_probs=25.4
Q ss_pred cccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
.|..|-+.+...+.+.. .-+..||.+|. .|-.|+..+...
T Consensus 7 ~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKME-YKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CBSSSCCCCCSSSCEEE-ETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCccCCCcccCCceEEE-ECcCeecccCC--------cccccCCccCCC
Confidence 68888887775433222 24667787774 477787777654
No 175
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.25 E-value=1.6e+02 Score=20.43 Aligned_cols=40 Identities=30% Similarity=0.616 Sum_probs=24.5
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
..|.-|-+.+...+.+ ..-+..||.+|. .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp CBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCCC
Confidence 3688887777644432 345667777763 366676666654
No 176
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.05 E-value=37 Score=22.41 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=28.6
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
..|.-|-..+...+.+.. .-+..||..|. .|-.|+..+..+
T Consensus 12 ~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp CBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred ccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 379999888876554322 35667888885 588888887654
No 177
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.75 E-value=79 Score=21.48 Aligned_cols=41 Identities=27% Similarity=0.596 Sum_probs=27.9
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
..|..|-+.+..++.+. ..-+..||.+|. .|-.|+..+...
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEE-EECccccccccC--------chhhCCCccCCC
Confidence 47999988877554432 235778888774 488888877654
No 178
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=22.08 E-value=5.9 Score=21.65 Aligned_cols=12 Identities=42% Similarity=1.043 Sum_probs=9.3
Q ss_pred cccHhhHHHHHh
Q 048433 238 QFHANCIDPWLR 249 (279)
Q Consensus 238 ~Fh~~CI~~WL~ 249 (279)
.||..|-++|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 478888888874
No 179
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.96 E-value=68 Score=21.49 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=25.9
Q ss_pred ccccccccccccCceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCCC
Q 048433 215 LTCTICLEQVKCGELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGSG 264 (279)
Q Consensus 215 ~~C~ICle~~~~~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~~ 264 (279)
..|.-|-+.+...+.+.. .-+..||.+|. .|-.|+.++..+
T Consensus 12 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CBCSSSCCBCCSTTTCEE-ETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCchhcCCccCCCceEEE-eCccEeccccC--------eECCCCCCCCCC
Confidence 468888887764333321 24667887773 477787776653
No 180
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=21.67 E-value=41 Score=19.17 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=18.3
Q ss_pred cccccccccccCceeEEeCCCCcccHhh
Q 048433 216 TCTICLEQVKCGELVRSLPCLHQFHANC 243 (279)
Q Consensus 216 ~C~ICle~~~~~~~v~~LpC~H~Fh~~C 243 (279)
.|+.|-..+-..+.+ ..-|..||..|
T Consensus 5 ~C~~C~k~Vy~~Ek~--~~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEKV--NCLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGCC--CSSSSCCCGGG
T ss_pred cCCccCCEEecceeE--EECCeEecccC
Confidence 699998876655432 23578899888
No 181
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=21.59 E-value=17 Score=23.48 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=24.1
Q ss_pred ccccccccCceeEE-eCCCCcccHhhHHHHHh---cCCCCccccc
Q 048433 219 ICLEQVKCGELVRS-LPCLHQFHANCIDPWLR---QRGTCPVCKF 259 (279)
Q Consensus 219 ICle~~~~~~~v~~-LpC~H~Fh~~CI~~WL~---~~~~CP~CR~ 259 (279)
||..... +..+.. -.|...||..|+.--.. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 7866544 323333 23888999999853322 2345888864
No 182
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.79 E-value=8 Score=27.82 Aligned_cols=28 Identities=25% Similarity=0.681 Sum_probs=19.2
Q ss_pred EEeC-CCCcccHhhHHHHHhcCC--CCcccc
Q 048433 231 RSLP-CLHQFHANCIDPWLRQRG--TCPVCK 258 (279)
Q Consensus 231 ~~Lp-C~H~Fh~~CI~~WL~~~~--~CP~CR 258 (279)
+.-| |++.||..|-..|=++|. +|..-+
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~ 74 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQ 74 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTTTSCHHHHH
T ss_pred eEeCCCCCccccccCCchhhcCCCCChHHHH
Confidence 3455 999999999988844433 465543
No 183
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.79 E-value=83 Score=20.82 Aligned_cols=40 Identities=20% Similarity=0.473 Sum_probs=26.2
Q ss_pred cccccccccccc--CceeEEeCCCCcccHhhHHHHHhcCCCCcccccccCC
Q 048433 215 LTCTICLEQVKC--GELVRSLPCLHQFHANCIDPWLRQRGTCPVCKFRMGS 263 (279)
Q Consensus 215 ~~C~ICle~~~~--~~~v~~LpC~H~Fh~~CI~~WL~~~~~CP~CR~~i~~ 263 (279)
..|.-|-+.+.. .+.+ ...-+..||.+|. .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCCC
Confidence 368888887764 2222 2235778888774 58888877754
Done!