BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048435
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 179/346 (51%), Gaps = 29/346 (8%)
Query: 2 ATCFIAHATIAWALDTAKKMGVKMAMFWPSAVAAFALSLTDAKITDHNGVPLK------S 55
TC ++ +++ + A++ + +++ S+ + + + +P K +
Sbjct: 119 VTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTN 178
Query: 56 GMIKIS----PKLPAMSTDEFIWSVPGDPIRRKILFGYISCAKKTLKICNWLLCSSFYEL 111
G ++ P L + + + +L +I A + K LL ++F EL
Sbjct: 179 GCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILL-NTFNEL 237
Query: 112 EPLACD----SIPNVLPIGPLL-------WINRPGKAAASLWPEDSTCLKWLDKQPSQSV 160
E + +IP++ PIGPL I++ ++LW ED+ CL WL+ + SV
Sbjct: 238 ESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSV 297
Query: 161 IYVAFGSIAIFSRCQFEEVALGLELAGRPFLWVVRPSLLDGSVIKYPDGFLERVPNQGMI 220
+YV FGS + + Q E A GL + FLW++RP L+ G + + F + ++G+I
Sbjct: 298 VYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLI 357
Query: 221 IEWAPQEQVLAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQFLISSYICDFWKVG 280
W PQ++VL H ++ FL+HCGWNST E + + VP LCWP+FADQ +IC+ W++G
Sbjct: 358 ASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIG 417
Query: 281 LGLKQEANGNISRHEIKRNLDQLLS-DSG--IRENGLQIKEMAGKS 323
+ E + N+ R E+ + ++++++ D G +++ +++K+ A ++
Sbjct: 418 M----EIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEEN 459
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 148/278 (53%), Gaps = 27/278 (9%)
Query: 82 RRKILFGYISCAKKTLKICNWLLCSSFYELEPLACDSI-------PNVLPIGPLLWINRP 134
R+ + ++ K K +L ++F+ELEP A ++ P V P+GPL+ I
Sbjct: 189 RKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNI--- 245
Query: 135 GKAAASLWPEDSTCLKWLDKQPSQSVIYVAFGSIAIFSRCQFEEVALGLELAGRPFLWVV 194
GK A E+S CLKWLD QP SV+YV+FGS + Q E+ALGL + + FLWV+
Sbjct: 246 GKQEAK-QTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVI 304
Query: 195 R-PSLLDGS-----------VIKYPDGFLERVPNQGMIIE-WAPQEQVLAHRAVACFLSH 241
R PS + S + P GFLER +G +I WAPQ QVLAH + FL+H
Sbjct: 305 RSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTH 364
Query: 242 CGWNSTIEGLSSAVPFLCWPYFADQFLISSYICDFWKVGLGLKQEANGNISRHEIKRNLD 301
CGWNST+E + S +P + WP +A+Q + + + + + L + +G + R E+ R +
Sbjct: 365 CGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVK 424
Query: 302 QLLSDS---GIRENGLQIKEMAGKSLIERESSRKNFEI 336
L+ G+R ++KE A + L + +S K +
Sbjct: 425 GLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSL 462
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 105/362 (29%), Positives = 174/362 (48%), Gaps = 52/362 (14%)
Query: 3 TCFIAHATIAWALDTAKKMGVKMAMFWPSAVAAFALSLTDAKITDHNGVPLKSGMIKISP 62
+C +A A I +A D A +MGV FW + + + + +I + GV G
Sbjct: 114 SCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQG------ 167
Query: 63 KLPAMSTDEFIWSVPG------DPIRRKILFGYISC--------AKKTLKICNWLLCSSF 108
DE + +PG ++ I+FG ++ + L + +SF
Sbjct: 168 -----REDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSF 222
Query: 109 YELEPLACDSIPN--------VLPIGPLLWINRPGKAAASLWPEDSTCLKWLDKQPSQSV 160
EL+ DS+ N L IGP I P + P + CL+WL ++ SV
Sbjct: 223 EELD----DSLTNDLKSKLKTYLNIGPFNLITPP-----PVVPNTTGCLQWLKERKPTSV 273
Query: 161 IYVAFGSIAIFSRCQFEEVALGLELAGRPFLWVVRPSLLDGSVIKYPDGFLERVPNQGMI 220
+Y++FG++ + ++ LE + PF+W SL D + + P+GFLE+ GM+
Sbjct: 274 VYISFGTVTTPPPAEVVALSEALEASRVPFIW----SLRDKARVHLPEGFLEKTRGYGMV 329
Query: 221 IEWAPQEQVLAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQFLISSYICDFWKVG 280
+ WAPQ +VLAH AV F++HCGWNS E ++ VP +C P+F DQ L + D ++G
Sbjct: 330 VPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG 389
Query: 281 LGLKQEANGNISRHEIKRNLDQLLSDS---GIRENGLQIKEMAGKSLIERESSRKNFEIF 337
+ ++ G ++ + DQ+LS +REN ++E A +++ + SS +NF
Sbjct: 390 VRIE---GGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITL 446
Query: 338 ID 339
+D
Sbjct: 447 VD 448
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 181/356 (50%), Gaps = 51/356 (14%)
Query: 15 LDTAKKMGVKMAMFWPSAVAAFALSLT----------DAKITDHNGVPLKSGMIKISPKL 64
+D + G+ +F S V +L L+ D DH + + IS ++
Sbjct: 128 IDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPG----ISNQV 183
Query: 65 PAMSTDEFIWSVPGDPIRRKILFGYISCAK--KTLKICNWLLCSSFYELEPLACDS---- 118
P+ + ++ G GYI+ K + + ++ ++F +LE + D+
Sbjct: 184 PSNVLPDACFNKDG---------GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 119 ---IPNVLPIGPLLWINRPGKAAASL-WPEDSTCLKWLDKQPSQSVIYVAFGSIAI-FSR 173
IP + +GPLL + G+ L + LKWLD+QP +SV+++ FGS+ + F
Sbjct: 235 DEKIPPIYAVGPLL--DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGP 292
Query: 174 CQFEEVALGLELAGRPFLWVVRPSLLDGSVIK--YPDGFLE--RVPNQGMIIEWAPQEQV 229
Q E+ALGL+ +G FLW S K +P+GFLE + +GMI WAPQ +V
Sbjct: 293 SQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEV 345
Query: 230 LAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQFLISSYICDFWKVGLGLK---QE 286
LAH+A+ F+SHCGWNS +E + VP L WP +A+Q L + + W VGLGL+ ++
Sbjct: 346 LAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRK 405
Query: 287 ANGNISRHEIKRNLDQLLS-DSGIRENGLQIKEMAGKSLIERESSRKNFEIFIDQL 341
+ ++ EI++ L L+ DS + + ++KEM+ ++++ SS + ID +
Sbjct: 406 GSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 181/356 (50%), Gaps = 51/356 (14%)
Query: 15 LDTAKKMGVKMAMFWPSAVAAFALSLT----------DAKITDHNGVPLKSGMIKISPKL 64
+D + G+ +F S V +L L+ D DH + + IS ++
Sbjct: 128 IDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPG----ISNQV 183
Query: 65 PAMSTDEFIWSVPGDPIRRKILFGYISCAK--KTLKICNWLLCSSFYELEPLACDS---- 118
P+ + ++ G GYI+ K + + ++ ++F +LE + D+
Sbjct: 184 PSNVLPDACFNKDG---------GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 119 ---IPNVLPIGPLLWINRPGKAAASL-WPEDSTCLKWLDKQPSQSVIYVAFGSIAI-FSR 173
IP + +GPLL + G+ L + LKWLD+QP +SV+++ FGS+ + F
Sbjct: 235 DEKIPPIYAVGPLL--DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGP 292
Query: 174 CQFEEVALGLELAGRPFLWVVRPSLLDGSVIK--YPDGFLE--RVPNQGMIIEWAPQEQV 229
Q E+ALGL+ +G FLW S K +P+GFLE + +GMI WAPQ +V
Sbjct: 293 SQIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEV 345
Query: 230 LAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQFLISSYICDFWKVGLGLK---QE 286
LAH+A+ F+SHCGWNS +E + VP L WP +A+Q L + + W VGLGL+ ++
Sbjct: 346 LAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRK 405
Query: 287 ANGNISRHEIKRNLDQLLS-DSGIRENGLQIKEMAGKSLIERESSRKNFEIFIDQL 341
+ ++ EI++ L L+ DS + + ++KEM+ ++++ SS + ID +
Sbjct: 406 GSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 164/350 (46%), Gaps = 33/350 (9%)
Query: 3 TCFIAHATIAWALDTAKKMGVKMAMFWPSAVAAFALSLTDAKITDHNGVP----LKSGMI 58
TC + A + D A++M K W + + + I + G +KS I
Sbjct: 119 TCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKS--I 176
Query: 59 KISPKLPAMSTDEFIWSVPGDPIRRKILFGYISCAKK---TLKICNWLLCSSFYELEPLA 115
+ P P + + V D I + + K L N + +SF + PL
Sbjct: 177 DVLPGFPELKASDLPEGVIKD-----IDVPFATMLHKMGLELPRANAVAINSFATIHPLI 231
Query: 116 CDSIPN----VLPIGPLLWINRPGKAAASLWPEDSTCLKWLDKQPSQSVIYVAFGSIAIF 171
+ + + +L +GP + P + + ++ CL+WLD+ + SV+Y++FGS+
Sbjct: 232 ENELNSKFKLLLNVGPF-NLTTPQRKVS----DEHGCLEWLDQHENSSVVYISFGSVVTP 286
Query: 172 SRCQFEEVALGLELAGRPFLWVVRPSLLDGSVIKYPDGFLERVPNQGMIIEWAPQEQVLA 231
+ +A LE G PF+W R + K P GFLER +G I+ WAPQ ++L
Sbjct: 287 PPHELTALAESLEECGFPFIWSFRGDPKE----KLPKGFLERTKTKGKIVAWAPQVEILK 342
Query: 232 HRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQFLISSYICDFWKVGLGLKQEANGNI 291
H +V FL+H GWNS +E + VP + P+F DQ L + ++G+G+ NG +
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD---NGVL 399
Query: 292 SRHEIKRNLDQLLSDSG---IRENGLQIKEMAGKSLIERESSRKNFEIFI 338
++ IK+ L+ +S +R+ +++KE A K++ + +S +F I
Sbjct: 400 TKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLI 449
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 211 LERVPNQGMIIEWAPQEQVLAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQFLIS 270
L VP + +W PQ +L + F++H G ST+E LS+AVP + P A+Q + +
Sbjct: 300 LGEVPPNVEVHQWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357
Query: 271 SYICDFWKVGLGLKQEANGNISRHEIKRNLDQLLSDSGIRENGLQIKE 318
I ++GLG + ++ +++ + + SD G+ E +++
Sbjct: 358 ERIV---ELGLG-RHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQ 401
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 220 IIEWAPQEQVLAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQFLISSYICDFWKV 279
+ +W PQ +L H F++H G N E + +P + P FADQ I
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ---PDNIAHXKAR 128
Query: 280 GLGLKQEANGNISRHEIKRNLDQLLSDSGIREN 312
G ++ + N S ++ L ++++D +EN
Sbjct: 129 GAAVRVDFN-TXSSTDLLNALKRVINDPSYKEN 160
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 211 LERVPNQGMIIEWAPQEQVLAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQF 267
L +P+ + +W PQ +L R F++H G + EGL++A P + P DQF
Sbjct: 278 LGELPDNVEVHDWVPQLAIL--RQADLFVTHAGAGGSQEGLATATPMIAVPQAVDQF 332
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 211 LERVPNQGMIIEWAPQEQVLAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQF 267
L VP + W PQ +L H V + H G +T+ L + VP L +P+ D F
Sbjct: 287 LGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 215 PNQGMIIEWAPQEQVLAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQFLISSYIC 274
P ++EW P +L + H G + + L++ VP P+ + Q +
Sbjct: 287 PANVRVVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 275 DFWKVGLGLKQEANGNISRHEIKRNLDQLLSDSGIRENGLQIKE 318
G+G EA G++ + +R LL D+G+RE L++++
Sbjct: 345 GL---GIGFDAEA-GSLGAEQCRR----LLDDAGLREAALRVRQ 380
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 215 PNQGMIIEWAPQEQVLAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQFLISSYIC 274
P ++EW P +L + H G + + L++ VP P+ + Q +
Sbjct: 287 PANVRVVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 275 DFWKVGLGLKQEANGNISRHEIKRNLDQLLSDSGIRENGLQIKE 318
G+G EA G++ + +R LL D+G+RE L++++
Sbjct: 345 GL---GIGFDAEA-GSLGAEQCRR----LLDDAGLREAALRVRQ 380
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 222 EWAPQEQVLAHRAVACFLSHCGWNSTIEGLSSAVPFLCWPYFADQFLISSYICDFWKVGL 281
+W P VLAH A AC L+H + +E ++ VP + P+FA + S+ +G
Sbjct: 287 QWIPFHSVLAH-ARAC-LTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGS 344
Query: 282 GLKQEANGNISRHEIKRNLDQLLSDS 307
L+ + + I+ +++L +DS
Sbjct: 345 VLRPD---QLEPASIREAVERLAADS 367
>pdb|3DHW|A Chain A, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|B Chain B, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|E Chain E, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|F Chain F, Crystal Structure Of Methionine Importer Metni
pdb|3TUI|A Chain A, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|B Chain B, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|E Chain E, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|F Chain F, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|A Chain A, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|B Chain B, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|E Chain E, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|F Chain F, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 217
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 123 LPIGPLLWINRPGK--AAASLWPEDSTCLKWLDKQPSQSVI--YVAFGSIAIFSRCQFEE 178
LP+G LL++ RPG+ A A L+ S + P ++ + F + + + +
Sbjct: 32 LPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQA 91
Query: 179 VALGLELAGRPFLWVVRPSLLDGSVIKYPDGFLE 212
+ L + PF+ +++ ++++ P G +E
Sbjct: 92 AIVPLTVGAAPFI----ARMVENALLEIPTGLIE 121
>pdb|3EPN|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Imidazole Ribonucleotide
pdb|3EPN|B Chain B, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Imidazole Ribonucleotide
pdb|3EPO|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Hmp-P
pdb|3EPO|B Chain B, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Hmp-P
Length = 612
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 277 WKVGLGLKQEANGNISRHEIKRNLDQLL 304
WK G+ + E G+++ H+IK N+D+ L
Sbjct: 404 WKHGVQVMIEGPGHVAMHKIKANMDEQL 431
>pdb|3KRS|A Chain A, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
pdb|3KRS|B Chain B, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
Length = 271
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 289 GNISRHEIKRNLDQLLSDSGIR--ENGLQIKEMAGKSLIERESSRKN 333
G+ R + DQ++++ + ENGL+I G+SL ERE+ + N
Sbjct: 117 GHSERRQYYSETDQIVNNKVKKGLENGLKIVLCIGESLSERETGKTN 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,581,489
Number of Sequences: 62578
Number of extensions: 443946
Number of successful extensions: 904
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 879
Number of HSP's gapped (non-prelim): 17
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)