BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048438
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 134/250 (53%), Gaps = 33/250 (13%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
AGLIP F+ AT+GTT + D L + + + IW+HVDAAYAGSA I PEFRH ++GV
Sbjct: 232 AGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGV 291
Query: 61 EGADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQI 109
E ADSF+ N HKW DC +W +P YLK+ +S + DY+ WQI
Sbjct: 292 EFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQI 351
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
L R FRSLK+WFV R YG++ L+ ++R HV ++ FE LV D RFE+ +VCF
Sbjct: 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCF 411
Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
R+ + N+ N LL+ IN++ K ++ L + +RFA
Sbjct: 412 RL----------------------KGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFA 449
Query: 230 TGATLTEERH 239
+ E H
Sbjct: 450 ICSRTVESAH 459
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 133/250 (53%), Gaps = 33/250 (13%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
AGLIP F+ AT+GTT + D L + + + IW+HVDAAYAGSA I PEFRH ++GV
Sbjct: 232 AGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGV 291
Query: 61 EGADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQI 109
E ADSF+ N H W DC +W +P YLK+ +S + DY+ WQI
Sbjct: 292 EFADSFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQI 351
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
L R FRSLK+WFV R YG++ L+ ++R HV ++ FE LV D RFE+ +VCF
Sbjct: 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCF 411
Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
R+ + N+ N LL+ IN++ K ++ L + +RFA
Sbjct: 412 RL----------------------KGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFA 449
Query: 230 TGATLTEERH 239
+ E H
Sbjct: 450 ICSRTVESAH 459
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/250 (38%), Positives = 133/250 (53%), Gaps = 33/250 (13%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
AGLIP F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA I PEFRH ++GV
Sbjct: 232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV 291
Query: 61 EGADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQI 109
E ADSF+ N HKW DC +W +P YLK+ S + DY+ WQ+
Sbjct: 292 EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL 351
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
L R FRSLK+WFV R YG++ L+ ++R HV ++ FE V D RFEV +VCF
Sbjct: 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF 411
Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
R+ + + N LLE IN++ K ++ L G + +RFA
Sbjct: 412 RL----------------------KGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449
Query: 230 TGATLTEERH 239
+ E H
Sbjct: 450 ICSRKVESGH 459
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 125/246 (50%), Gaps = 35/246 (14%)
Query: 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
GLIP + T+GTT A D L V + +W+HVDAAYAGSA I PE+RH + G+E
Sbjct: 232 GLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIE 291
Query: 62 GADSFSLNAHKWFFATLDCCCLWATNPE-----------YLKNKATESKPVVDYKDWQIT 110
ADSF+ N H W DC +W +P YLK+ S P DY+ WQI
Sbjct: 292 SADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP--DYRHWQIP 349
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
L R FR+LKLWFV+R YG+ENL+ +R H N A+ F L D RFE+ + +VCFR
Sbjct: 350 LGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFR 409
Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
+ + NE N LL+ IN G ++ + +Y +R A
Sbjct: 410 L----------------------KGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAI 447
Query: 231 GATLTE 236
+ T+
Sbjct: 448 CSRFTQ 453
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 35/245 (14%)
Query: 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
GL+P+F+CAT+GTT + A D L L + + G+W+H+DAAYAG+A + PEFR F+ G+E
Sbjct: 239 GLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE 298
Query: 62 GADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQIT 110
ADSF+ N KW DC W + NP YL++ S D+ WQI
Sbjct: 299 YADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMHWQIP 356
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
LSR FRS+KLWFVIR++G++NL+ +R MA+ FE LV D FE+ H +V FR
Sbjct: 357 LSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFR 416
Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
+ + N +L+ I +G+ ++ + IRF
Sbjct: 417 L----------------------KGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTV 454
Query: 231 GATLT 235
+ T
Sbjct: 455 TSQFT 459
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 13/194 (6%)
Query: 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
G +P + AT GTT + A DPL+ + DV ++ G+W+HVDAA+ GS + RH +DG++
Sbjct: 257 GAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQ 316
Query: 62 GADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKP------------VVDYKDWQI 109
ADS + N HK A L C L + L + S+ +D D +
Sbjct: 317 RADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVV 376
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
R LKLW + + G + L + +AR + + FE+V F VCF
Sbjct: 377 QCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCF 436
Query: 170 RVSPLPVLMDKLKT 183
P P L K ++
Sbjct: 437 WFVP-PSLRGKQES 449
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 40/241 (16%)
Query: 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
GLIP + T GTT A+D L + D A + W HVD AY G A I + + GVE
Sbjct: 256 GLIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHKSRLKGVE 314
Query: 62 GADSFSLNAHKWFFATLDCCCLWATN----------PEYLKNKATESKPVVDYKDWQITL 111
A S S++ HK F+ T+ C L + +YL + E +VD I
Sbjct: 315 RAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDK---SIAT 371
Query: 112 SRSFRSLKLWFVIRNYGMENL----RHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVV 167
++ F +LK++ +N G + L H L + +A + + +FE++ + V
Sbjct: 372 TKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLEVA----DXIRTNDQFELLAEPSLSTV 427
Query: 168 CFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIR 227
FR + E ++E N+ L G A + ++ G A++
Sbjct: 428 LFRAT------------------HETADLDELNKALRLEALTRGIAVLGETIVDGKTALK 469
Query: 228 F 228
F
Sbjct: 470 F 470
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 15/186 (8%)
Query: 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
G +P ++ AT GTT A DP++ + D+ +++ +W+HVDAA+ G + + RH ++G+E
Sbjct: 246 GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 305
Query: 62 GADSFSLNAHKWFFATLDCCCLWAT-----------NPEYLKNKATESKPVVDYKDWQIT 110
A+S + N H L C + + YL + D D I
Sbjct: 306 RANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQ 365
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF---PCHFAVV 167
R K W + + G + + + +A + + FE+VF P H V
Sbjct: 366 CGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH-TNV 424
Query: 168 CFRVSP 173
CF P
Sbjct: 425 CFWYIP 430
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 15/186 (8%)
Query: 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
G +P ++ AT GTT A DP++ + D+ +++ +W+HVDAA+ G + + RH ++G+E
Sbjct: 243 GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIE 302
Query: 62 GADSFSLNAHKWFFATLDCCCLWATNP-----------EYLKNKATESKPVVDYKDWQIT 110
A+S + N H L C + YL + D D I
Sbjct: 303 RANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQ 362
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF---PCHFAVV 167
R K W + + G + + + +A + + FE+VF P H V
Sbjct: 363 CGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH-TNV 421
Query: 168 CFRVSP 173
CF P
Sbjct: 422 CFWYIP 427
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 14/186 (7%)
Query: 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE 61
G +P + AT GTT A DPL + D+ K++ IW+HVDAA+ G + + + + GVE
Sbjct: 239 GFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSGVE 298
Query: 62 GADSFSLNAHKWFFATLDCCCLWA-----------TNPEYLKNKATESKPVVDYKDWQIT 110
A+S + N H L C L + YL + D D +
Sbjct: 299 RANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKALQ 358
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF---PCHFAVV 167
R KLW + R G + + +A ++ + +E+VF P H V
Sbjct: 359 CGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTNVC 418
Query: 168 CFRVSP 173
+ + P
Sbjct: 419 FWYIPP 424
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 8 LCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE------ 61
+ GTT + +D ++ L +AK+ I++HVDAA+ G F + ++ GV
Sbjct: 175 IIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS 234
Query: 62 -GADSFSLNAHK 72
G DS +++ HK
Sbjct: 235 LGVDSITIDPHK 246
>pdb|1RXT|A Chain A, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|B Chain B, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|C Chain C, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|D Chain D, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase
Length = 496
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 173 PLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASG 211
PLP +M+ +E+C E E+ N +NR L N +G
Sbjct: 15 PLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTG 53
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 19/84 (22%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFP------------EFRHFIDGVEGADSFS 67
VDP+ + +A + GI HVDA G I P +FR +EG S S
Sbjct: 259 VDPIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFR-----LEGVTSVS 311
Query: 68 LNAHKWFFATLDCCCLWATNPEYL 91
+ HK+ + + P+ L
Sbjct: 312 ADTHKYGYGAKGTSVILYRRPDLL 335
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 17 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACI 49
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASI 181
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 17 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACI 49
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 157 VVPLENIKEICTIAKEHGINVHIDGARIFNASI 189
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 19/84 (22%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFP------------EFRHFIDGVEGADSFS 67
VDP+ + +A + GI HVDA G I P +FR +EG S S
Sbjct: 255 VDPIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFR-----LEGVTSVS 307
Query: 68 LNAHKWFFATLDCCCLWATNPEYL 91
+ HK+ + + P+ L
Sbjct: 308 ADTHKYGYGAKGTSVILYRRPDLL 331
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 17 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACI 49
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASI 181
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 22 PLKPLCDVAKQFGIWVHVDAAYA 44
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 22 PLKPLCDVAKQFGIWVHVDAAYA 44
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 19/84 (22%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFP------------EFRHFIDGVEGADSFS 67
VDP+ + +A + GI HVDA G I P +FR +EG S S
Sbjct: 259 VDPIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFR-----LEGVTSVS 311
Query: 68 LNAHKWFFATLDCCCLWATNPEYL 91
+ H + + + P+ L
Sbjct: 312 ADTHXYGYGAKGTSVILYRRPDLL 335
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 19/84 (22%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFP------------EFRHFIDGVEGADSFS 67
VDP+ + +A + GI HVDA G I P +FR +EG S S
Sbjct: 255 VDPIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFR-----LEGVTSVS 307
Query: 68 LNAHKWFFATLDCCCLWATNPEYL 91
+ H + + + P+ L
Sbjct: 308 ADTHAYGYGAKGTSVILYRRPDLL 331
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 19/84 (22%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFP------------EFRHFIDGVEGADSFS 67
VDP+ + +A + GI HVDA G I P +FR +EG S S
Sbjct: 255 VDPIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFR-----LEGVTSVS 307
Query: 68 LNAHKWFFATLDCCCLWATNPEYL 91
+ H + + + P+ L
Sbjct: 308 ADTHXYGYGAKGTSVILYRRPDLL 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,839,406
Number of Sequences: 62578
Number of extensions: 266910
Number of successful extensions: 779
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 22
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)