Query 048438
Match_columns 239
No_of_seqs 273 out of 1742
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048438.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048438hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02590 probable tyrosine dec 100.0 5.7E-52 1.2E-56 368.6 24.1 224 1-239 284-518 (539)
2 PLN02880 tyrosine decarboxylas 100.0 1.3E-49 2.9E-54 352.8 23.2 224 1-239 236-470 (490)
3 TIGR03799 NOD_PanD_pyr putativ 100.0 1.5E-45 3.3E-50 327.8 22.3 238 1-239 262-511 (522)
4 KOG0628 Aromatic-L-amino-acid/ 100.0 8.7E-45 1.9E-49 305.1 16.7 215 1-239 232-457 (511)
5 PF00282 Pyridoxal_deC: Pyrido 100.0 1.5E-39 3.3E-44 280.0 15.0 172 1-172 191-373 (373)
6 KOG0629 Glutamate decarboxylas 100.0 3.3E-38 7.2E-43 263.1 11.7 231 1-238 250-494 (510)
7 TIGR03811 tyr_de_CO2_Ent tyros 100.0 7.3E-36 1.6E-40 268.1 21.6 222 1-238 275-586 (608)
8 TIGR01788 Glu-decarb-GAD gluta 100.0 1.4E-35 3E-40 259.2 18.6 213 4-236 186-413 (431)
9 COG0076 GadB Glutamate decarbo 100.0 1.6E-35 3.6E-40 259.5 16.6 221 7-238 210-435 (460)
10 PLN02263 serine decarboxylase 100.0 1.3E-32 2.7E-37 239.8 17.3 169 2-173 226-400 (470)
11 PRK02769 histidine decarboxyla 100.0 6.6E-32 1.4E-36 233.0 19.7 169 2-173 158-330 (380)
12 PLN03032 serine decarboxylase; 100.0 4.2E-31 9E-36 226.8 16.7 167 4-173 161-333 (374)
13 COG0520 csdA Selenocysteine ly 100.0 7.6E-29 1.7E-33 215.0 19.7 203 4-238 162-391 (405)
14 cd06450 DOPA_deC_like DOPA dec 100.0 9.7E-29 2.1E-33 211.6 17.5 188 2-238 146-333 (345)
15 PRK13520 L-tyrosine decarboxyl 99.9 3E-23 6.5E-28 179.3 17.9 203 5-237 152-356 (371)
16 TIGR03812 tyr_de_CO2_Arch tyro 99.9 5.3E-23 1.1E-27 178.0 18.0 203 6-238 155-362 (373)
17 PF00266 Aminotran_5: Aminotra 99.9 2.1E-23 4.6E-28 180.5 15.1 200 4-238 139-367 (371)
18 COG1104 NifS Cysteine sulfinat 99.9 1E-22 2.2E-27 172.0 18.0 154 5-175 142-305 (386)
19 TIGR01977 am_tr_V_EF2568 cyste 99.9 3.1E-22 6.7E-27 173.3 19.6 205 4-238 137-365 (376)
20 PLN02651 cysteine desulfurase 99.9 2.7E-22 5.9E-27 173.2 18.8 158 5-174 139-305 (364)
21 TIGR01814 kynureninase kynuren 99.9 3.1E-22 6.6E-27 175.3 18.4 199 4-238 171-393 (406)
22 PRK10874 cysteine sulfinate de 99.9 9.8E-22 2.1E-26 171.8 18.8 203 4-238 160-384 (401)
23 PRK09295 bifunctional cysteine 99.9 1.2E-21 2.6E-26 171.5 18.2 203 4-238 164-390 (406)
24 TIGR03392 FeS_syn_CsdA cystein 99.9 3E-21 6.5E-26 168.6 17.7 203 4-238 157-381 (398)
25 PLN02855 Bifunctional selenocy 99.9 9E-21 2E-25 166.9 18.6 203 4-238 173-404 (424)
26 TIGR01979 sufS cysteine desulf 99.9 9.1E-21 2E-25 165.7 18.4 203 4-238 159-387 (403)
27 PRK03080 phosphoserine aminotr 99.9 1.7E-21 3.7E-26 169.0 13.4 200 7-238 139-359 (378)
28 TIGR03402 FeS_nifS cysteine de 99.9 2.2E-20 4.8E-25 162.1 18.9 198 4-238 136-358 (379)
29 PLN02409 serine--glyoxylate am 99.8 2E-20 4.3E-25 163.5 15.2 203 4-237 137-357 (401)
30 cd06453 SufS_like Cysteine des 99.8 8.2E-20 1.8E-24 158.1 18.6 203 4-238 139-365 (373)
31 TIGR03403 nifS_epsilon cystein 99.8 1.4E-19 3.1E-24 157.2 19.2 156 5-173 141-301 (382)
32 PLN02724 Molybdenum cofactor s 99.8 3.5E-20 7.6E-25 174.1 15.9 164 5-174 193-394 (805)
33 TIGR01976 am_tr_V_VC1184 cyste 99.8 1.7E-19 3.7E-24 157.4 18.1 201 5-238 157-389 (397)
34 TIGR02326 transamin_PhnW 2-ami 99.8 1.1E-19 2.3E-24 156.9 15.6 203 6-238 131-348 (363)
35 KOG1383 Glutamate decarboxylas 99.8 4.1E-19 8.8E-24 150.9 17.3 203 3-230 217-428 (491)
36 TIGR02006 IscS cysteine desulf 99.8 2.5E-19 5.4E-24 156.8 15.2 146 5-161 143-290 (402)
37 COG0075 Serine-pyruvate aminot 99.8 2.1E-19 4.5E-24 153.0 13.7 198 5-233 132-344 (383)
38 PRK09331 Sep-tRNA:Cys-tRNA syn 99.8 4.9E-18 1.1E-22 147.9 18.1 204 4-236 158-365 (387)
39 TIGR03235 DNA_S_dndA cysteine 99.8 7.9E-18 1.7E-22 144.8 18.9 159 4-173 138-302 (353)
40 cd06451 AGAT_like Alanine-glyo 99.8 2.8E-18 6.1E-23 147.6 14.7 204 4-238 124-343 (356)
41 TIGR00461 gcvP glycine dehydro 99.8 9.6E-18 2.1E-22 156.5 18.7 201 2-230 626-847 (939)
42 PRK13580 serine hydroxymethylt 99.8 3.7E-18 8.1E-23 149.8 14.8 198 3-235 219-424 (493)
43 cd00613 GDC-P Glycine cleavage 99.8 6.3E-18 1.4E-22 147.5 16.3 203 5-238 160-390 (398)
44 TIGR01364 serC_1 phosphoserine 99.8 1.8E-18 3.8E-23 148.4 12.5 195 4-238 130-334 (349)
45 PRK05355 3-phosphoserine/phosp 99.8 1.2E-18 2.7E-23 150.0 11.2 193 5-238 142-344 (360)
46 PRK05367 glycine dehydrogenase 99.8 9E-18 2E-22 158.6 17.4 208 4-237 640-860 (954)
47 TIGR01366 serC_3 phosphoserine 99.8 9.9E-19 2.1E-23 150.8 10.1 200 4-238 128-346 (361)
48 TIGR03301 PhnW-AepZ 2-aminoeth 99.8 6.2E-18 1.4E-22 145.1 14.5 204 5-238 126-343 (355)
49 PTZ00094 serine hydroxymethylt 99.8 6.2E-18 1.3E-22 150.0 14.8 196 4-235 182-387 (452)
50 PRK13479 2-aminoethylphosphona 99.8 8.8E-18 1.9E-22 145.2 14.3 203 6-238 133-349 (368)
51 KOG1549 Cysteine desulfurase N 99.8 4.6E-18 9.9E-23 144.6 11.7 77 4-87 181-257 (428)
52 COG2008 GLY1 Threonine aldolas 99.8 3.3E-18 7.1E-23 142.1 10.5 190 4-239 131-329 (342)
53 PRK02948 cysteine desulfurase; 99.8 2.7E-17 5.8E-22 142.9 16.3 155 5-173 139-300 (381)
54 PRK04366 glycine dehydrogenase 99.7 3.3E-17 7.2E-22 146.2 14.9 206 5-238 209-434 (481)
55 cd06452 SepCysS Sep-tRNA:Cys-t 99.7 1.9E-16 4.2E-21 136.6 19.0 200 4-232 139-343 (361)
56 cd00611 PSAT_like Phosphoserin 99.7 1.6E-17 3.5E-22 143.0 11.6 194 5-238 139-342 (355)
57 PRK14012 cysteine desulfurase; 99.7 4.6E-17 1E-21 142.5 13.8 145 5-161 145-292 (404)
58 TIGR03531 selenium_SpcS O-phos 99.7 7.7E-17 1.7E-21 141.1 13.4 147 3-162 204-356 (444)
59 TIGR02539 SepCysS Sep-tRNA:Cys 99.7 1.9E-15 4.1E-20 130.9 18.0 199 4-231 146-348 (370)
60 PLN02414 glycine dehydrogenase 99.7 4.5E-15 9.8E-20 140.2 18.9 209 5-238 667-893 (993)
61 PLN03226 serine hydroxymethylt 99.7 4.1E-15 8.9E-20 132.1 16.4 163 4-174 183-354 (475)
62 TIGR01822 2am3keto_CoA 2-amino 99.6 1.9E-14 4.2E-19 125.4 17.1 198 4-238 170-375 (393)
63 PRK07179 hypothetical protein; 99.6 1.2E-14 2.5E-19 127.5 14.5 196 5-238 182-384 (407)
64 PRK13034 serine hydroxymethylt 99.6 9.1E-15 2E-19 128.4 13.4 156 5-174 169-326 (416)
65 PLN02452 phosphoserine transam 99.6 4E-15 8.7E-20 128.0 10.9 189 5-237 146-348 (365)
66 COG0156 BioF 7-keto-8-aminopel 99.6 1.8E-14 3.9E-19 123.8 14.6 195 4-238 171-376 (388)
67 KOG2862 Alanine-glyoxylate ami 99.6 1.5E-14 3.3E-19 117.6 12.9 203 3-236 141-365 (385)
68 PRK00451 glycine dehydrogenase 99.6 1.8E-14 3.8E-19 127.8 13.5 198 5-238 205-434 (447)
69 PLN02271 serine hydroxymethylt 99.6 5.9E-14 1.3E-18 124.4 16.1 163 3-174 297-475 (586)
70 PRK05367 glycine dehydrogenase 99.6 5.3E-14 1.1E-18 133.3 16.3 195 6-238 207-428 (954)
71 PLN02414 glycine dehydrogenase 99.6 5.2E-14 1.1E-18 133.1 16.0 193 7-238 236-455 (993)
72 PLN02721 threonine aldolase 99.6 5.6E-14 1.2E-18 120.6 14.9 196 4-237 137-337 (353)
73 PRK05937 8-amino-7-oxononanoat 99.6 9E-14 2E-18 120.4 15.7 190 4-238 143-336 (370)
74 cd06502 TA_like Low-specificit 99.6 1.5E-14 3.4E-19 123.4 10.8 195 4-238 127-327 (338)
75 cd00609 AAT_like Aspartate ami 99.6 5.1E-14 1.1E-18 120.1 13.7 197 4-233 132-337 (350)
76 PRK12566 glycine dehydrogenase 99.6 7.7E-14 1.7E-18 130.0 15.5 203 5-238 642-862 (954)
77 cd06454 KBL_like KBL_like; thi 99.5 2.2E-13 4.7E-18 116.7 15.6 200 3-237 131-336 (349)
78 TIGR01821 5aminolev_synth 5-am 99.5 3.3E-13 7.2E-18 118.1 16.0 198 4-238 177-382 (402)
79 TIGR01365 serC_2 phosphoserine 99.5 6.8E-14 1.5E-18 120.6 11.4 207 8-237 131-358 (374)
80 cd00616 AHBA_syn 3-amino-5-hyd 99.5 3.5E-13 7.7E-18 115.6 13.7 158 5-173 107-276 (352)
81 TIGR01437 selA_rel uncharacter 99.5 5.3E-13 1.1E-17 115.3 14.7 135 10-160 155-289 (363)
82 PRK09064 5-aminolevulinate syn 99.5 7.1E-13 1.5E-17 116.2 15.3 198 4-238 178-383 (407)
83 PLN02509 cystathionine beta-ly 99.5 1.4E-12 3E-17 115.4 14.9 148 5-171 218-384 (464)
84 PRK08861 cystathionine gamma-s 99.5 1.5E-12 3.3E-17 113.1 14.3 151 4-173 138-307 (388)
85 PRK07582 cystathionine gamma-l 99.5 1.9E-12 4.2E-17 111.9 14.6 149 6-173 134-301 (366)
86 PRK05958 8-amino-7-oxononanoat 99.5 3.6E-12 7.7E-17 110.6 16.1 197 5-237 169-372 (385)
87 PRK09028 cystathionine beta-ly 99.4 1.8E-12 3.9E-17 112.7 13.5 150 4-173 146-314 (394)
88 TIGR01324 cysta_beta_ly_B cyst 99.4 2.9E-12 6.2E-17 111.1 14.4 149 5-173 136-303 (377)
89 PRK13392 5-aminolevulinate syn 99.4 3.3E-12 7.2E-17 112.1 15.0 198 4-238 178-383 (410)
90 PRK08114 cystathionine beta-ly 99.4 2.4E-12 5.3E-17 111.7 13.8 149 5-173 148-317 (395)
91 cd00614 CGS_like CGS_like: Cys 99.4 2.3E-12 5E-17 111.6 13.5 150 5-173 126-294 (369)
92 PLN02822 serine palmitoyltrans 99.4 9.4E-12 2E-16 111.2 17.7 206 6-238 247-463 (481)
93 TIGR00858 bioF 8-amino-7-oxono 99.4 7.1E-12 1.5E-16 107.7 16.4 198 5-238 147-351 (360)
94 PRK06767 methionine gamma-lyas 99.4 2.7E-12 5.8E-17 111.8 13.8 150 5-173 147-309 (386)
95 PRK13393 5-aminolevulinate syn 99.4 7.8E-12 1.7E-16 109.6 16.4 198 4-238 177-382 (406)
96 PRK08134 O-acetylhomoserine am 99.4 1.2E-11 2.7E-16 108.9 17.6 160 5-173 150-351 (433)
97 PRK07269 cystathionine gamma-s 99.4 4.3E-12 9.2E-17 109.6 14.3 150 5-173 137-289 (364)
98 PRK05613 O-acetylhomoserine am 99.4 8.2E-12 1.8E-16 110.0 15.8 160 5-173 156-360 (437)
99 TIGR01329 cysta_beta_ly_E cyst 99.4 5.5E-12 1.2E-16 109.5 14.1 150 4-172 131-299 (378)
100 PRK00011 glyA serine hydroxyme 99.4 7.1E-12 1.5E-16 110.2 14.7 147 15-173 174-322 (416)
101 cd00378 SHMT Serine-glycine hy 99.4 5.6E-12 1.2E-16 110.3 13.9 155 5-173 162-318 (402)
102 PRK07504 O-succinylhomoserine 99.4 7.1E-12 1.5E-16 109.5 14.3 151 5-173 151-319 (398)
103 PRK06939 2-amino-3-ketobutyrat 99.4 1.6E-11 3.4E-16 107.1 16.4 198 4-237 174-378 (397)
104 PRK07812 O-acetylhomoserine am 99.4 3E-11 6.5E-16 106.5 17.5 160 5-173 156-355 (436)
105 PRK12462 phosphoserine aminotr 99.4 5.2E-12 1.1E-16 108.1 12.1 192 6-237 145-347 (364)
106 PLN02483 serine palmitoyltrans 99.4 2.3E-11 5E-16 108.9 16.6 198 6-238 242-452 (489)
107 KOG1359 Glycine C-acetyltransf 99.4 1.4E-11 3E-16 99.9 13.6 191 5-238 193-398 (417)
108 PRK08045 cystathionine gamma-s 99.4 1.7E-11 3.6E-16 106.7 14.9 150 5-173 138-306 (386)
109 KOG1368 Threonine aldolase [Am 99.4 1.8E-12 3.9E-17 105.2 8.0 180 15-236 165-352 (384)
110 PRK07811 cystathionine gamma-s 99.4 2.2E-11 4.7E-16 106.2 15.2 150 5-173 147-315 (388)
111 PLN02955 8-amino-7-oxononanoat 99.4 1.2E-11 2.7E-16 108.8 13.6 188 5-238 250-447 (476)
112 COG1103 Archaea-specific pyrid 99.4 1.7E-11 3.8E-16 98.4 12.6 163 2-173 154-320 (382)
113 PRK08248 O-acetylhomoserine am 99.3 4.3E-11 9.3E-16 105.5 15.8 160 5-173 150-351 (431)
114 PRK08064 cystathionine beta-ly 99.3 2.4E-11 5.3E-16 105.9 14.1 150 5-173 139-307 (390)
115 cd00615 Orn_deC_like Ornithine 99.3 1.4E-12 3E-17 109.6 6.1 139 4-152 154-294 (294)
116 PRK05994 O-acetylhomoserine am 99.3 1.2E-10 2.6E-15 102.6 18.5 160 5-173 149-350 (427)
117 PRK08776 cystathionine gamma-s 99.3 4.4E-11 9.6E-16 104.7 15.4 150 5-173 146-314 (405)
118 TIGR01328 met_gam_lyase methio 99.3 3E-11 6.6E-16 105.3 14.3 151 5-173 145-314 (391)
119 PRK06176 cystathionine gamma-s 99.3 3.2E-11 7E-16 104.8 14.2 150 5-173 135-303 (380)
120 TIGR01325 O_suc_HS_sulf O-succ 99.3 3.4E-11 7.4E-16 104.7 14.4 148 5-172 140-306 (380)
121 TIGR02080 O_succ_thio_ly O-suc 99.3 4.5E-11 9.8E-16 103.9 15.0 150 5-173 137-305 (382)
122 TIGR01825 gly_Cac_T_rel pyrido 99.3 6.1E-11 1.3E-15 103.1 15.4 198 4-238 163-367 (385)
123 PLN03227 serine palmitoyltrans 99.3 9.4E-11 2E-15 102.4 16.4 208 4-238 138-368 (392)
124 PRK08133 O-succinylhomoserine 99.3 5.1E-11 1.1E-15 103.9 14.4 150 5-173 147-314 (390)
125 PRK07671 cystathionine beta-ly 99.3 5.8E-11 1.3E-15 103.1 14.6 148 5-171 135-301 (377)
126 PRK05968 hypothetical protein; 99.3 3.5E-11 7.5E-16 104.9 13.2 149 6-173 149-311 (389)
127 KOG1360 5-aminolevulinate synt 99.3 6.6E-11 1.4E-15 99.6 14.0 198 3-236 302-508 (570)
128 cd01494 AAT_I Aspartate aminot 99.3 1E-11 2.2E-16 94.9 8.4 81 2-86 90-170 (170)
129 COG3844 Kynureninase [Amino ac 99.3 1E-10 2.2E-15 96.2 14.4 195 5-236 167-385 (407)
130 PRK08249 cystathionine gamma-s 99.3 1.1E-10 2.4E-15 102.0 15.6 150 5-173 150-317 (398)
131 PRK07810 O-succinylhomoserine 99.3 5.9E-11 1.3E-15 103.9 13.8 150 5-173 156-324 (403)
132 PRK06084 O-acetylhomoserine am 99.3 1.7E-10 3.7E-15 101.6 16.7 160 5-173 144-346 (425)
133 PRK08574 cystathionine gamma-s 99.3 2.7E-11 5.8E-16 105.4 11.4 150 5-173 138-308 (385)
134 PRK06460 hypothetical protein; 99.3 2.5E-10 5.4E-15 99.1 15.9 149 5-173 131-298 (376)
135 PRK08247 cystathionine gamma-s 99.3 1.3E-10 2.7E-15 100.7 13.6 150 5-173 137-289 (366)
136 PRK06434 cystathionine gamma-l 99.2 1.4E-10 3E-15 100.6 13.3 148 5-173 149-309 (384)
137 KOG0630 Predicted pyridoxal-de 99.2 2.8E-11 6E-16 104.2 8.4 150 1-160 289-440 (838)
138 PRK05939 hypothetical protein; 99.2 7.2E-10 1.6E-14 96.8 15.7 160 4-173 131-321 (397)
139 PLN02242 methionine gamma-lyas 99.2 7.4E-10 1.6E-14 97.4 15.6 151 5-173 164-335 (418)
140 PF00464 SHMT: Serine hydroxym 99.2 2.4E-10 5.2E-15 98.7 11.7 156 4-173 169-339 (399)
141 PRK07503 methionine gamma-lyas 99.2 2.8E-10 6.2E-15 99.6 12.0 151 5-173 151-320 (403)
142 TIGR02618 tyr_phenol_ly tyrosi 99.2 1.6E-10 3.5E-15 100.7 10.2 160 4-173 171-347 (450)
143 PRK07050 cystathionine beta-ly 99.2 1.9E-10 4E-15 100.5 10.7 150 5-173 151-319 (394)
144 COG0112 GlyA Glycine/serine hy 99.2 4E-10 8.7E-15 95.1 11.6 156 4-173 166-323 (413)
145 PRK11658 UDP-4-amino-4-deoxy-L 99.1 1.4E-09 3E-14 94.6 14.6 153 15-172 129-298 (379)
146 PRK05967 cystathionine beta-ly 99.1 9.6E-10 2.1E-14 95.6 13.4 149 5-173 150-317 (395)
147 PRK06234 methionine gamma-lyas 99.1 1.6E-09 3.4E-14 94.9 14.7 151 5-173 150-321 (400)
148 PTZ00125 ornithine aminotransf 99.1 3.2E-09 6.8E-14 92.9 16.5 192 5-236 179-379 (400)
149 cd00610 OAT_like Acetyl ornith 99.1 4.5E-09 9.8E-14 92.2 17.4 203 4-237 191-400 (413)
150 TIGR01141 hisC histidinol-phos 99.1 1.7E-09 3.6E-14 92.8 14.3 186 5-231 143-333 (346)
151 TIGR01140 L_thr_O3P_dcar L-thr 99.1 2.3E-09 5E-14 91.5 15.0 186 7-234 128-320 (330)
152 PRK03244 argD acetylornithine 99.1 5E-09 1.1E-13 91.7 17.4 190 5-237 184-379 (398)
153 PRK13238 tnaA tryptophanase/L- 99.1 9.2E-10 2E-14 97.8 12.3 159 4-171 177-352 (460)
154 TIGR01326 OAH_OAS_sulfhy OAH/O 99.1 5.4E-09 1.2E-13 92.1 16.9 160 5-173 143-343 (418)
155 TIGR03588 PseC UDP-4-keto-6-de 99.1 2.4E-09 5.1E-14 93.2 14.6 150 5-161 122-286 (380)
156 TIGR03576 pyridox_MJ0158 pyrid 99.1 3E-09 6.5E-14 91.4 14.0 187 6-234 138-328 (346)
157 PRK08056 threonine-phosphate d 99.1 5.7E-09 1.2E-13 90.0 15.8 190 5-233 143-339 (356)
158 PRK08361 aspartate aminotransf 99.1 5.3E-09 1.1E-13 91.3 15.6 193 5-232 167-372 (391)
159 PF01212 Beta_elim_lyase: Beta 99.1 1.2E-11 2.6E-16 103.3 -0.9 148 5-168 124-284 (290)
160 PF01276 OKR_DC_1: Orn/Lys/Arg 99.1 8.2E-10 1.8E-14 95.9 9.6 144 9-162 172-329 (417)
161 PRK06108 aspartate aminotransf 99.1 3.3E-09 7.1E-14 92.1 13.2 196 5-232 159-364 (382)
162 PRK04073 rocD ornithine--oxo-a 99.1 7.1E-09 1.5E-13 90.7 15.2 190 5-238 187-383 (396)
163 COG2873 MET17 O-acetylhomoseri 99.0 1.6E-08 3.5E-13 84.8 16.1 159 7-174 150-350 (426)
164 TIGR00461 gcvP glycine dehydro 99.0 1.4E-08 3E-13 95.9 16.7 195 7-238 196-417 (939)
165 PRK13237 tyrosine phenol-lyase 99.0 2.8E-09 6.1E-14 93.3 11.3 154 7-170 180-351 (460)
166 PRK00854 rocD ornithine--oxo-a 99.0 1.8E-08 3.9E-13 88.3 16.3 191 5-237 188-386 (401)
167 PRK05764 aspartate aminotransf 99.0 2.3E-08 5E-13 87.2 16.0 197 6-232 166-373 (393)
168 PF01053 Cys_Met_Meta_PP: Cys/ 99.0 1.8E-08 3.8E-13 87.5 13.4 150 5-173 141-311 (386)
169 TIGR00474 selA seryl-tRNA(sec) 98.9 3.6E-09 7.9E-14 93.6 9.3 82 5-92 212-306 (454)
170 TIGR01885 Orn_aminotrans ornit 98.9 7.1E-08 1.5E-12 84.6 17.3 193 6-237 188-387 (401)
171 PRK06702 O-acetylhomoserine am 98.9 3.5E-08 7.6E-13 86.9 15.1 160 5-173 148-348 (432)
172 PRK07908 hypothetical protein; 98.9 3.8E-08 8.2E-13 84.6 14.6 183 6-232 141-330 (349)
173 PRK10534 L-threonine aldolase; 98.9 1.4E-08 3.1E-13 86.6 11.9 178 5-231 130-312 (333)
174 TIGR00707 argD acetylornithine 98.9 4.9E-08 1.1E-12 84.7 14.9 189 5-237 171-366 (379)
175 PLN02624 ornithine-delta-amino 98.9 1.5E-07 3.3E-12 84.2 18.0 196 4-237 224-429 (474)
176 PF00155 Aminotran_1_2: Aminot 98.9 3.9E-08 8.4E-13 84.8 13.1 194 5-236 149-353 (363)
177 PRK06358 threonine-phosphate d 98.9 1E-07 2.2E-12 82.2 15.7 189 5-233 142-339 (354)
178 TIGR02617 tnaA_trp_ase tryptop 98.9 1E-08 2.2E-13 89.1 9.1 147 4-160 184-350 (467)
179 PRK05957 aspartate aminotransf 98.9 9.9E-08 2.1E-12 83.3 15.0 195 5-234 161-368 (389)
180 PRK06225 aspartate aminotransf 98.8 8E-08 1.7E-12 83.6 13.8 192 5-232 158-358 (380)
181 PRK05964 adenosylmethionine--8 98.8 1.8E-07 3.9E-12 82.6 16.0 200 5-238 200-408 (423)
182 PRK04311 selenocysteine syntha 98.8 1.8E-08 4E-13 89.4 9.7 85 5-92 217-311 (464)
183 KOG2467 Glycine/serine hydroxy 98.8 2.7E-07 5.8E-12 77.4 15.7 167 3-176 188-363 (477)
184 PRK15029 arginine decarboxylas 98.8 2.1E-08 4.6E-13 93.1 10.2 145 2-155 310-466 (755)
185 PRK07505 hypothetical protein; 98.8 1.8E-07 3.9E-12 82.0 15.3 83 6-90 181-267 (402)
186 TIGR01265 tyr_nico_aTase tyros 98.8 4.3E-07 9.3E-12 79.7 17.3 202 5-233 170-384 (403)
187 PRK07324 transaminase; Validat 98.8 3.5E-07 7.6E-12 79.4 16.6 192 5-232 154-352 (373)
188 PRK07568 aspartate aminotransf 98.8 4.3E-07 9.3E-12 79.4 17.1 159 5-173 163-328 (397)
189 PRK00950 histidinol-phosphate 98.8 2.1E-07 4.7E-12 80.2 14.4 183 5-232 159-345 (361)
190 COG0626 MetC Cystathionine bet 98.8 1.5E-07 3.3E-12 81.3 13.2 152 4-173 149-319 (396)
191 PRK04635 histidinol-phosphate 98.8 6.2E-08 1.3E-12 83.5 10.9 189 5-232 148-338 (354)
192 PRK06207 aspartate aminotransf 98.8 6E-07 1.3E-11 78.8 17.1 195 5-232 179-384 (405)
193 PRK08363 alanine aminotransfer 98.8 2.2E-07 4.7E-12 81.4 14.1 199 5-232 167-376 (398)
194 PRK02731 histidinol-phosphate 98.8 3.5E-07 7.6E-12 79.1 14.9 188 5-231 155-348 (367)
195 TIGR03246 arg_catab_astC succi 98.7 4.8E-07 1E-11 79.3 15.7 194 5-237 180-380 (397)
196 KOG1357 Serine palmitoyltransf 98.7 5.9E-08 1.3E-12 83.2 9.5 197 7-238 279-488 (519)
197 COG0160 GabT 4-aminobutyrate a 98.7 4.8E-07 1E-11 79.2 15.4 202 3-236 221-429 (447)
198 cd00617 Tnase_like Tryptophana 98.7 1.1E-07 2.4E-12 83.7 11.3 160 5-172 153-328 (431)
199 PRK07049 methionine gamma-lyas 98.7 4E-07 8.7E-12 80.4 14.7 149 5-173 175-350 (427)
200 TIGR03540 DapC_direct LL-diami 98.7 8.9E-07 1.9E-11 77.1 16.8 194 5-232 165-368 (383)
201 PRK14807 histidinol-phosphate 98.7 7.4E-07 1.6E-11 76.7 15.8 188 4-234 148-337 (351)
202 PRK03715 argD acetylornithine 98.7 8.5E-07 1.8E-11 77.6 15.4 193 5-238 180-379 (395)
203 PRK07309 aromatic amino acid a 98.7 1.1E-06 2.4E-11 76.8 16.1 195 5-232 167-370 (391)
204 PRK06290 aspartate aminotransf 98.7 1.5E-06 3.2E-11 76.6 16.6 203 5-238 180-390 (410)
205 PRK07777 aminotransferase; Val 98.7 7.4E-07 1.6E-11 77.7 14.7 196 5-232 160-368 (387)
206 PRK01688 histidinol-phosphate 98.7 1.6E-07 3.5E-12 80.8 10.4 189 6-232 147-339 (351)
207 TIGR03539 DapC_actino succinyl 98.7 1.5E-06 3.1E-11 75.1 15.8 191 5-233 143-345 (357)
208 TIGR03537 DapC succinyldiamino 98.7 1E-06 2.3E-11 75.8 14.9 189 5-231 137-334 (350)
209 PRK02936 argD acetylornithine 98.7 3.1E-06 6.8E-11 73.5 18.0 189 5-237 168-364 (377)
210 PRK07681 aspartate aminotransf 98.7 1.5E-06 3.1E-11 76.2 15.8 195 5-232 167-370 (399)
211 PRK05387 histidinol-phosphate 98.7 2E-06 4.3E-11 73.9 16.4 187 7-232 147-336 (353)
212 PRK07550 hypothetical protein; 98.6 9.9E-07 2.2E-11 76.9 14.6 198 5-234 164-370 (386)
213 PRK05942 aspartate aminotransf 98.6 1.1E-06 2.5E-11 76.8 14.9 194 5-232 171-374 (394)
214 PRK08912 hypothetical protein; 98.6 1E-06 2.3E-11 76.8 14.5 197 5-233 160-369 (387)
215 PRK15407 lipopolysaccharide bi 98.6 6.5E-07 1.4E-11 79.3 13.1 142 6-156 161-331 (438)
216 PRK05093 argD bifunctional N-s 98.6 4.6E-06 1E-10 73.2 18.2 193 5-237 185-385 (403)
217 PF05889 SLA_LP_auto_ag: Solub 98.6 1.4E-07 3E-12 80.5 8.2 159 2-173 152-318 (389)
218 PRK04260 acetylornithine amino 98.6 2.6E-06 5.7E-11 74.0 16.4 188 6-237 167-362 (375)
219 PRK09276 LL-diaminopimelate am 98.6 2.3E-06 4.9E-11 74.6 15.9 191 5-232 167-370 (385)
220 PRK07682 hypothetical protein; 98.6 1E-06 2.2E-11 76.6 13.6 192 5-232 155-358 (378)
221 PRK11706 TDP-4-oxo-6-deoxy-D-g 98.6 1.3E-06 2.9E-11 75.9 14.3 141 5-154 120-271 (375)
222 PRK07865 N-succinyldiaminopime 98.6 3.7E-06 8.1E-11 72.7 16.6 191 5-232 149-350 (364)
223 PRK09082 methionine aminotrans 98.6 1E-06 2.2E-11 76.9 13.0 155 5-172 164-327 (386)
224 TIGR02407 ectoine_ectB diamino 98.6 5.2E-06 1.1E-10 73.1 17.4 193 5-237 195-397 (412)
225 PRK01278 argD acetylornithine 98.6 5.1E-06 1.1E-10 72.5 17.2 79 5-86 176-258 (389)
226 PRK11522 putrescine--2-oxoglut 98.6 1.9E-06 4.2E-11 76.7 14.6 198 4-238 231-437 (459)
227 PLN00145 tyrosine/nicotianamin 98.6 5E-06 1.1E-10 73.6 17.0 206 5-232 191-406 (430)
228 PF02347 GDC-P: Glycine cleava 98.6 2E-06 4.3E-11 75.1 14.0 143 7-157 199-368 (429)
229 PLN02760 4-aminobutyrate:pyruv 98.6 2.9E-06 6.3E-11 76.4 15.5 208 4-237 260-476 (504)
230 COG0399 WecE Predicted pyridox 98.6 1E-06 2.2E-11 75.8 11.9 143 15-161 130-276 (374)
231 PRK13360 omega amino acid--pyr 98.6 3E-06 6.5E-11 75.2 15.4 203 4-237 215-425 (442)
232 PRK06425 histidinol-phosphate 98.6 3.4E-06 7.4E-11 72.1 15.1 187 5-233 123-317 (332)
233 PRK02627 acetylornithine amino 98.6 7E-06 1.5E-10 71.7 17.4 188 5-236 183-378 (396)
234 PLN03026 histidinol-phosphate 98.6 2.6E-06 5.6E-11 74.2 14.6 190 4-233 175-366 (380)
235 TIGR01264 tyr_amTase_E tyrosin 98.5 4.5E-06 9.8E-11 73.2 15.9 201 6-233 170-382 (401)
236 PTZ00433 tyrosine aminotransfe 98.5 5.6E-06 1.2E-10 72.9 16.4 202 5-233 178-391 (412)
237 PRK12381 bifunctional succinyl 98.5 2.5E-06 5.5E-11 74.9 14.1 194 5-237 184-384 (406)
238 PRK03158 histidinol-phosphate 98.5 2.4E-06 5.2E-11 73.7 13.7 188 5-233 152-345 (359)
239 PRK08175 aminotransferase; Val 98.5 3.9E-06 8.4E-11 73.4 15.1 197 5-231 165-370 (395)
240 PRK05769 4-aminobutyrate amino 98.5 9.8E-06 2.1E-10 72.0 17.5 197 4-237 221-424 (441)
241 PLN00175 aminotransferase fami 98.5 5.7E-06 1.2E-10 72.9 15.9 195 5-232 188-395 (413)
242 PLN02376 1-aminocyclopropane-1 98.5 4.5E-06 9.8E-11 75.1 15.4 202 3-233 198-420 (496)
243 PRK04781 histidinol-phosphate 98.5 5.5E-06 1.2E-10 71.7 15.5 188 5-233 153-347 (364)
244 COG0436 Aspartate/tyrosine/aro 98.5 3.1E-06 6.7E-11 74.0 13.7 200 5-234 164-375 (393)
245 PRK09265 aminotransferase AlaT 98.5 1.3E-05 2.8E-10 70.4 17.7 197 5-231 169-382 (404)
246 TIGR02379 ECA_wecE TDP-4-keto- 98.5 4.1E-06 8.8E-11 72.9 14.4 135 14-154 126-272 (376)
247 PRK09264 diaminobutyrate--2-ox 98.5 1.1E-05 2.4E-10 71.4 16.9 192 5-237 199-401 (425)
248 COG1932 SerC Phosphoserine ami 98.5 2.2E-06 4.8E-11 72.1 11.4 188 7-235 147-346 (365)
249 PRK06541 hypothetical protein; 98.5 7.6E-06 1.7E-10 73.0 15.7 212 4-237 221-440 (460)
250 PTZ00377 alanine aminotransfer 98.5 1.3E-05 2.8E-10 72.0 17.3 42 4-45 218-262 (481)
251 PRK04870 histidinol-phosphate 98.5 3E-06 6.4E-11 73.1 12.6 185 5-233 154-342 (356)
252 TIGR03372 putres_am_tran putre 98.5 2.1E-05 4.5E-10 69.8 17.9 199 3-238 223-430 (442)
253 PRK13578 ornithine decarboxyla 98.5 5.7E-07 1.2E-11 83.1 8.1 152 3-161 280-447 (720)
254 PF01041 DegT_DnrJ_EryC1: DegT 98.4 9.2E-07 2E-11 76.5 8.8 141 14-160 120-267 (363)
255 PLN02656 tyrosine transaminase 98.4 9.3E-06 2E-10 71.4 15.2 201 5-232 170-385 (409)
256 PRK09221 beta alanine--pyruvat 98.4 1.1E-05 2.4E-10 71.8 15.6 203 4-237 218-428 (445)
257 KOG0053 Cystathionine beta-lya 98.4 1.7E-06 3.8E-11 74.3 10.0 133 5-157 163-298 (409)
258 PRK08068 transaminase; Reviewe 98.4 1.6E-05 3.4E-10 69.5 16.3 193 5-232 168-371 (389)
259 PRK12414 putative aminotransfe 98.4 8.5E-06 1.8E-10 71.0 14.6 194 5-232 163-369 (384)
260 PRK08117 4-aminobutyrate amino 98.4 1.7E-05 3.7E-10 70.3 16.3 201 4-237 207-414 (433)
261 PRK08960 hypothetical protein; 98.4 8.1E-06 1.8E-10 71.2 14.0 194 5-232 166-369 (387)
262 PRK08360 4-aminobutyrate amino 98.4 3.2E-05 7E-10 68.7 17.7 202 4-238 204-412 (443)
263 PRK05166 histidinol-phosphate 98.4 7.8E-06 1.7E-10 70.9 13.4 189 5-233 160-355 (371)
264 PRK09148 aminotransferase; Val 98.4 1.5E-05 3.3E-10 70.0 15.2 196 4-231 165-371 (405)
265 PRK08153 histidinol-phosphate 98.4 1.8E-05 3.8E-10 68.7 15.3 189 5-232 156-348 (369)
266 PRK07337 aminotransferase; Val 98.4 2E-05 4.3E-10 68.7 15.5 153 5-172 164-325 (388)
267 PRK06836 aspartate aminotransf 98.4 3E-05 6.5E-10 67.9 16.6 81 5-86 169-259 (394)
268 PRK06107 aspartate aminotransf 98.4 2E-05 4.4E-10 69.1 15.5 205 5-233 167-383 (402)
269 PLN02187 rooty/superroot1 98.4 2.8E-05 6E-10 69.6 16.4 204 5-233 205-421 (462)
270 PRK06058 4-aminobutyrate amino 98.4 4.6E-05 9.9E-10 67.8 17.7 201 5-237 220-427 (443)
271 PRK13355 bifunctional HTH-doma 98.4 3E-05 6.6E-10 70.3 16.8 197 5-231 282-495 (517)
272 PRK03321 putative aminotransfe 98.3 8.9E-06 1.9E-10 70.0 12.4 184 5-233 146-335 (352)
273 PRK06348 aspartate aminotransf 98.3 3.3E-05 7.3E-10 67.3 15.9 193 6-231 164-366 (384)
274 PRK15400 lysine decarboxylase 98.3 9.7E-07 2.1E-11 81.5 6.4 143 3-160 296-455 (714)
275 PRK15399 lysine decarboxylase 98.3 3.7E-06 8E-11 77.8 10.1 144 3-160 296-455 (713)
276 PRK15481 transcriptional regul 98.3 1.7E-05 3.6E-10 70.3 13.9 188 7-234 214-414 (431)
277 TIGR00700 GABAtrnsam 4-aminobu 98.3 5.9E-05 1.3E-09 66.6 17.1 196 4-232 197-400 (420)
278 PRK07683 aminotransferase A; V 98.3 4.8E-05 1.1E-09 66.4 16.1 153 5-169 162-320 (387)
279 TIGR03251 LAT_fam L-lysine 6-t 98.3 7.2E-05 1.6E-09 66.3 17.1 193 4-238 218-420 (431)
280 PRK08593 4-aminobutyrate amino 98.3 5.4E-05 1.2E-09 67.3 16.4 201 5-238 208-415 (445)
281 PRK09105 putative aminotransfe 98.3 2.3E-05 4.9E-10 68.1 13.7 181 5-232 166-353 (370)
282 TIGR03542 DAPAT_plant LL-diami 98.3 3.5E-05 7.5E-10 67.6 14.9 199 5-232 174-386 (402)
283 PLN00143 tyrosine/nicotianamin 98.3 6.5E-05 1.4E-09 66.1 16.6 208 5-233 171-387 (409)
284 COG1168 MalY Bifunctional PLP- 98.3 5.5E-05 1.2E-09 64.2 15.0 195 6-235 160-371 (388)
285 PRK04612 argD acetylornithine 98.3 0.00011 2.5E-09 64.6 17.7 194 5-237 188-388 (408)
286 PRK08088 4-aminobutyrate amino 98.2 0.0001 2.3E-09 65.2 17.2 201 4-237 199-408 (425)
287 PRK07366 succinyldiaminopimela 98.2 6.4E-05 1.4E-09 65.6 15.7 195 5-232 166-372 (388)
288 KOG1358 Serine palmitoyltransf 98.2 3.2E-05 7E-10 65.7 12.8 205 7-238 236-451 (467)
289 PRK06105 aminotransferase; Pro 98.2 4.9E-05 1.1E-09 67.9 14.9 207 4-236 218-433 (460)
290 PRK07678 aminotransferase; Val 98.2 9.3E-05 2E-09 66.0 16.6 211 4-237 213-434 (451)
291 PRK05639 4-aminobutyrate amino 98.2 7E-05 1.5E-09 66.8 15.8 199 5-237 223-428 (457)
292 COG3033 TnaA Tryptophanase [Am 98.2 6.4E-06 1.4E-10 69.2 8.5 157 3-170 185-362 (471)
293 PLN02607 1-aminocyclopropane-1 98.2 0.00011 2.3E-09 65.6 16.8 201 2-233 198-419 (447)
294 TIGR03538 DapC_gpp succinyldia 98.2 4.7E-05 1E-09 66.6 14.4 155 5-172 166-333 (393)
295 COG1003 GcvP Glycine cleavage 98.2 2.6E-05 5.7E-10 67.1 12.2 141 11-159 210-368 (496)
296 PRK06173 adenosylmethionine--8 98.2 6.2E-05 1.4E-09 66.6 15.2 195 5-236 207-409 (429)
297 TIGR00699 GABAtrns_euk 4-amino 98.2 4.8E-05 1E-09 67.8 14.3 189 5-237 252-451 (464)
298 PRK07036 hypothetical protein; 98.2 7.9E-05 1.7E-09 66.7 15.2 202 4-231 220-431 (466)
299 PRK07392 threonine-phosphate d 98.2 0.00013 2.9E-09 62.9 16.0 189 4-234 148-344 (360)
300 PRK05965 hypothetical protein; 98.2 9.4E-05 2E-09 66.1 15.3 208 4-236 215-431 (459)
301 COG1921 SelA Selenocysteine sy 98.2 3.1E-06 6.6E-11 72.5 5.5 83 7-94 159-243 (395)
302 PRK06062 hypothetical protein; 98.2 0.00019 4.2E-09 63.9 17.2 208 4-237 214-430 (451)
303 PLN02450 1-aminocyclopropane-1 98.2 0.00011 2.5E-09 65.7 15.8 199 3-232 190-411 (468)
304 KOG3846 L-kynurenine hydrolase 98.2 0.00011 2.3E-09 60.8 14.0 147 2-155 212-377 (465)
305 PRK07590 L,L-diaminopimelate a 98.2 0.00019 4.2E-09 63.1 16.9 201 5-231 177-392 (409)
306 PRK14808 histidinol-phosphate 98.1 0.00019 4.1E-09 61.4 16.1 182 6-234 140-322 (335)
307 PRK08636 aspartate aminotransf 98.1 0.00026 5.7E-09 62.1 17.2 197 4-231 175-381 (403)
308 PRK07481 hypothetical protein; 98.1 0.00014 3E-09 64.9 15.3 141 4-153 213-360 (449)
309 PLN00144 acetylornithine trans 98.1 0.00035 7.6E-09 61.0 17.4 188 5-235 168-363 (382)
310 PRK06777 4-aminobutyrate amino 98.1 0.0002 4.3E-09 63.3 16.0 194 5-231 199-400 (421)
311 COG4992 ArgD Ornithine/acetylo 98.1 0.00014 3E-09 62.6 14.3 189 7-236 187-382 (404)
312 PRK08297 L-lysine aminotransfe 98.1 0.0002 4.4E-09 63.7 15.9 192 4-237 225-426 (443)
313 TIGR00508 bioA adenosylmethion 98.1 7.7E-05 1.7E-09 66.0 13.1 181 20-237 228-411 (427)
314 PRK03317 histidinol-phosphate 98.1 9.9E-05 2.2E-09 63.9 13.6 183 5-232 161-347 (368)
315 PRK05664 threonine-phosphate d 98.1 0.00029 6.3E-09 60.1 16.2 177 7-232 127-310 (330)
316 PRK08354 putative aminotransfe 98.1 0.00019 4.2E-09 60.7 14.7 73 7-85 120-196 (311)
317 PRK09440 avtA valine--pyruvate 98.1 0.00017 3.8E-09 63.4 14.8 80 5-85 180-262 (416)
318 PRK07986 adenosylmethionine--8 98.1 9.7E-05 2.1E-09 65.4 13.1 178 22-236 227-407 (428)
319 PRK07495 4-aminobutyrate amino 98.1 0.00022 4.8E-09 63.1 15.3 200 5-236 199-405 (425)
320 PRK09792 4-aminobutyrate trans 98.0 0.0006 1.3E-08 60.3 17.6 202 4-237 198-406 (421)
321 PRK06082 4-aminobutyrate amino 98.0 0.00023 5E-09 63.6 15.0 197 6-235 231-434 (459)
322 PRK00615 glutamate-1-semialdeh 98.0 0.00019 4.2E-09 63.6 14.3 79 4-86 201-283 (433)
323 TIGR00709 dat 2,4-diaminobutyr 98.0 0.00022 4.7E-09 63.5 14.6 207 5-237 207-420 (442)
324 PRK02610 histidinol-phosphate 98.0 0.00036 7.8E-09 60.6 15.6 184 4-232 168-354 (374)
325 PRK06959 putative threonine-ph 98.0 0.00045 9.7E-09 59.3 15.9 177 7-231 133-314 (339)
326 PRK00062 glutamate-1-semialdeh 98.0 0.00011 2.3E-09 65.1 12.3 158 4-173 197-361 (426)
327 PRK06149 hypothetical protein; 98.0 0.00026 5.7E-09 68.8 15.8 204 3-236 743-954 (972)
328 PRK12403 putative aminotransfe 98.0 0.0004 8.6E-09 62.1 15.8 79 5-86 223-306 (460)
329 PRK07482 hypothetical protein; 98.0 0.0003 6.5E-09 62.9 14.5 208 5-236 221-438 (461)
330 PLN02231 alanine transaminase 98.0 0.00098 2.1E-08 60.7 17.8 157 4-169 271-452 (534)
331 PRK12389 glutamate-1-semialdeh 98.0 0.0004 8.6E-09 61.6 15.0 137 4-152 200-340 (428)
332 COG0403 GcvP Glycine cleavage 97.9 0.00069 1.5E-08 58.4 15.5 157 6-172 212-398 (450)
333 TIGR00713 hemL glutamate-1-sem 97.9 0.00029 6.4E-09 62.2 14.0 79 4-86 195-277 (423)
334 PLN02482 glutamate-1-semialdeh 97.9 0.00058 1.3E-08 61.2 15.8 138 4-153 246-387 (474)
335 PRK06943 adenosylmethionine--8 97.9 0.0011 2.3E-08 59.2 17.1 200 4-236 221-430 (453)
336 PRK07030 adenosylmethionine--8 97.9 0.00053 1.1E-08 61.4 15.1 206 5-236 215-430 (466)
337 PRK06916 adenosylmethionine--8 97.9 0.00038 8.2E-09 62.2 14.0 207 5-236 224-439 (460)
338 PRK06938 diaminobutyrate--2-ox 97.9 0.00056 1.2E-08 61.2 15.0 207 5-237 232-445 (464)
339 COG1982 LdcC Arginine/lysine/o 97.9 3.8E-05 8.3E-10 68.8 7.4 147 8-162 169-321 (557)
340 PRK06148 hypothetical protein; 97.9 0.0003 6.5E-09 68.6 14.2 205 3-237 783-995 (1013)
341 PRK09147 succinyldiaminopimela 97.9 0.00057 1.2E-08 59.8 14.7 191 5-233 167-379 (396)
342 PRK07480 putative aminotransfe 97.9 0.00097 2.1E-08 59.6 15.7 80 5-87 220-304 (456)
343 PRK06918 4-aminobutyrate amino 97.8 0.0017 3.8E-08 57.9 17.2 198 5-235 220-426 (451)
344 PRK06855 aminotransferase; Val 97.8 0.001 2.2E-08 59.0 15.4 155 6-172 173-344 (433)
345 PRK14809 histidinol-phosphate 97.8 0.00097 2.1E-08 57.5 14.5 182 5-232 155-340 (357)
346 PRK05630 adenosylmethionine--8 97.8 0.0006 1.3E-08 60.3 13.3 178 21-235 222-403 (422)
347 COG0079 HisC Histidinol-phosph 97.8 0.00068 1.5E-08 58.5 13.2 186 5-233 146-338 (356)
348 PF00202 Aminotran_3: Aminotra 97.8 0.0002 4.3E-09 61.5 9.5 79 6-87 179-261 (339)
349 PRK03967 histidinol-phosphate 97.7 0.0013 2.7E-08 56.4 14.2 75 7-85 143-218 (337)
350 PRK06931 diaminobutyrate--2-ox 97.7 0.0014 2.9E-08 58.7 14.3 207 5-237 226-439 (459)
351 COG3977 Alanine-alpha-ketoisov 97.7 0.0019 4E-08 53.6 13.7 79 5-86 180-263 (417)
352 PRK12566 glycine dehydrogenase 97.7 0.0017 3.7E-08 62.0 15.4 151 10-171 213-392 (954)
353 PRK08742 adenosylmethionine--8 97.7 0.0015 3.3E-08 58.5 14.6 206 5-236 237-451 (472)
354 PRK01533 histidinol-phosphate 97.6 0.0006 1.3E-08 59.1 10.7 181 5-233 152-339 (366)
355 PRK06917 hypothetical protein; 97.6 0.0013 2.8E-08 58.6 12.8 211 5-237 200-422 (447)
356 PRK07483 hypothetical protein; 97.6 0.0044 9.5E-08 55.2 15.8 209 6-236 201-421 (443)
357 PLN02368 alanine transaminase 97.6 0.0027 5.8E-08 55.9 14.2 154 4-169 210-392 (407)
358 PRK05839 hypothetical protein; 97.6 0.0032 6.9E-08 54.7 14.2 79 5-85 156-246 (374)
359 COG0001 HemL Glutamate-1-semia 97.6 0.002 4.3E-08 56.2 12.5 157 3-174 199-366 (432)
360 PLN02672 methionine S-methyltr 97.5 0.003 6.4E-08 61.5 14.1 210 7-232 831-1062(1082)
361 PF03841 SelA: L-seryl-tRNA se 97.5 0.0002 4.4E-09 61.0 5.6 70 20-94 156-233 (367)
362 PRK07046 aminotransferase; Val 97.4 0.0088 1.9E-07 53.4 15.3 74 5-87 219-300 (453)
363 PRK04013 argD acetylornithine/ 97.4 0.0066 1.4E-07 52.7 13.4 78 5-86 163-244 (364)
364 KOG1404 Alanine-glyoxylate ami 97.3 0.003 6.4E-08 54.1 10.7 203 5-236 213-422 (442)
365 KOG0256 1-aminocyclopropane-1- 97.3 0.0043 9.3E-08 53.4 11.6 206 2-234 224-444 (471)
366 PLN02397 aspartate transaminas 97.3 0.0041 8.8E-08 55.1 11.8 80 5-84 195-282 (423)
367 PTZ00376 aspartate aminotransf 97.3 0.0032 6.9E-08 55.3 11.0 79 6-84 178-264 (404)
368 PRK08637 hypothetical protein; 97.3 0.018 3.9E-07 50.3 15.7 81 6-86 148-242 (388)
369 PRK06209 glutamate-1-semialdeh 97.2 0.012 2.5E-07 52.3 14.0 78 5-86 188-265 (431)
370 COG1167 ARO8 Transcriptional r 97.2 0.013 2.8E-07 52.5 14.4 199 5-236 228-440 (459)
371 PRK09257 aromatic amino acid a 97.2 0.0078 1.7E-07 52.7 12.4 80 6-85 174-260 (396)
372 KOG0259 Tyrosine aminotransfer 97.2 0.028 6.1E-07 48.1 14.9 210 4-235 199-418 (447)
373 PLN02974 adenosylmethionine-8- 97.1 0.024 5.1E-07 54.2 15.5 81 4-87 584-670 (817)
374 KOG2040 Glycine dehydrogenase 97.1 0.0042 9.1E-08 56.4 9.8 146 7-160 683-841 (1001)
375 KOG3843 Predicted serine hydro 97.1 0.00015 3.3E-09 58.8 0.6 121 20-152 173-295 (432)
376 COG0161 BioA Adenosylmethionin 96.8 0.029 6.3E-07 49.5 11.9 177 17-216 228-412 (449)
377 KOG0257 Kynurenine aminotransf 96.7 0.0076 1.6E-07 52.0 7.8 161 4-172 172-344 (420)
378 KOG1402 Ornithine aminotransfe 96.5 0.029 6.2E-07 47.3 9.6 126 15-154 218-348 (427)
379 KOG2790 Phosphoserine aminotra 96.3 0.051 1.1E-06 44.9 9.9 153 8-174 152-315 (370)
380 KOG1405 4-aminobutyrate aminot 96.0 0.13 2.9E-06 43.8 10.9 56 17-73 288-344 (484)
381 KOG0634 Aromatic amino acid am 95.8 1.2 2.6E-05 39.1 18.3 204 6-232 206-447 (472)
382 KOG0633 Histidinol phosphate a 95.2 1 2.2E-05 37.1 13.0 191 4-234 160-362 (375)
383 TIGR03801 asp_4_decarbox aspar 94.6 0.094 2E-06 47.7 6.2 79 5-86 241-325 (521)
384 PRK09275 aspartate aminotransf 93.6 0.16 3.5E-06 46.3 5.9 79 5-86 242-326 (527)
385 COG1448 TyrB Aspartate/tyrosin 91.9 2 4.3E-05 37.2 9.6 159 8-170 176-351 (396)
386 PF06838 Met_gamma_lyase: Meth 91.1 8.7 0.00019 33.3 12.6 70 19-94 173-245 (403)
387 KOG1401 Acetylornithine aminot 89.7 14 0.00029 32.5 14.2 79 6-87 208-290 (433)
388 cd01455 vWA_F11C1-5a_type Von 87.1 1.2 2.5E-05 35.0 4.4 36 6-41 114-149 (191)
389 KOG2040 Glycine dehydrogenase 77.4 24 0.00052 33.1 9.3 147 15-172 257-432 (1001)
390 smart00642 Aamy Alpha-amylase 76.3 2.4 5.1E-05 32.5 2.5 28 15-42 64-91 (166)
391 PF00128 Alpha-amylase: Alpha 75.5 2.4 5.3E-05 35.1 2.6 32 12-43 43-74 (316)
392 PRK09441 cytoplasmic alpha-amy 72.7 3.1 6.6E-05 37.6 2.7 32 14-45 74-107 (479)
393 PRK00014 ribB 3,4-dihydroxy-2- 71.0 7.8 0.00017 31.3 4.3 41 1-43 169-209 (230)
394 PRK08057 cobalt-precorrin-6x r 69.1 4.3 9.4E-05 33.3 2.6 30 17-46 48-77 (248)
395 PF02571 CbiJ: Precorrin-6x re 68.9 4.4 9.6E-05 33.2 2.6 31 16-46 48-78 (249)
396 TIGR02402 trehalose_TreZ malto 60.1 7.7 0.00017 35.7 2.7 32 12-43 151-182 (542)
397 PLN00196 alpha-amylase; Provis 59.6 7.3 0.00016 34.7 2.4 28 15-42 86-113 (428)
398 PRK12313 glycogen branching en 58.3 8.9 0.00019 36.0 2.9 29 14-42 213-241 (633)
399 PRK10785 maltodextrin glucosid 58.0 8.2 0.00018 36.0 2.5 29 14-42 219-247 (598)
400 COG0296 GlgB 1,4-alpha-glucan 57.8 9.4 0.0002 35.6 2.8 33 12-44 205-237 (628)
401 PRK05402 glycogen branching en 57.0 9.3 0.0002 36.5 2.8 30 13-42 307-336 (726)
402 PLN02831 Bifunctional GTP cycl 55.7 21 0.00045 32.0 4.6 42 1-43 188-229 (450)
403 PLN03244 alpha-amylase; Provis 54.5 11 0.00025 36.1 2.8 32 12-43 432-463 (872)
404 COG2099 CobK Precorrin-6x redu 53.4 14 0.00031 30.3 2.9 29 17-45 49-77 (257)
405 TIGR01515 branching_enzym alph 53.1 12 0.00026 35.0 2.7 29 14-42 199-227 (613)
406 PRK10933 trehalose-6-phosphate 52.1 12 0.00026 34.5 2.6 29 14-42 74-102 (551)
407 PRK09505 malS alpha-amylase; R 52.1 13 0.00028 35.3 2.8 29 14-42 285-313 (683)
408 PRK09314 bifunctional 3,4-dihy 51.8 26 0.00057 30.1 4.4 41 1-43 153-193 (339)
409 cd05564 PTS_IIB_chitobiose_lic 51.7 22 0.00049 24.3 3.4 54 6-71 2-55 (96)
410 KOG0258 Alanine aminotransfera 50.7 19 0.00042 31.5 3.4 42 2-43 213-257 (475)
411 PLN02361 alpha-amylase 50.6 13 0.00029 32.7 2.6 29 14-42 69-97 (401)
412 PRK14019 bifunctional 3,4-dihy 50.2 27 0.00058 30.5 4.3 40 1-42 154-193 (367)
413 TIGR02403 trehalose_treC alpha 49.0 14 0.00029 34.1 2.4 28 15-42 69-96 (543)
414 PRK09311 bifunctional 3,4-dihy 47.9 35 0.00077 30.1 4.7 41 1-43 155-195 (402)
415 PF05670 DUF814: Domain of unk 47.9 14 0.00031 25.0 1.8 25 24-48 20-45 (90)
416 COG0366 AmyA Glycosidases [Car 47.9 14 0.00031 33.0 2.4 27 16-42 72-98 (505)
417 PRK09318 bifunctional 3,4-dihy 47.6 32 0.0007 30.2 4.4 41 1-43 140-180 (387)
418 COG2870 RfaE ADP-heptose synth 47.4 22 0.00047 31.3 3.2 29 13-41 150-178 (467)
419 PRK09319 bifunctional 3,4-dihy 45.8 35 0.00075 31.4 4.4 41 1-43 158-198 (555)
420 PRK12485 bifunctional 3,4-dihy 45.8 36 0.00077 29.7 4.3 41 1-43 154-194 (369)
421 TIGR02456 treS_nterm trehalose 45.4 16 0.00034 33.6 2.2 29 14-42 69-97 (539)
422 cd05565 PTS_IIB_lactose PTS_II 43.7 40 0.00086 23.4 3.6 54 6-71 3-56 (99)
423 PLN02447 1,4-alpha-glucan-bran 42.8 22 0.00047 34.1 2.8 30 14-43 293-322 (758)
424 PF02603 Hpr_kinase_N: HPr Ser 42.4 31 0.00068 25.0 3.0 20 21-40 92-111 (127)
425 PF02638 DUF187: Glycosyl hydr 41.5 20 0.00044 30.4 2.2 19 20-38 69-87 (311)
426 PF04577 DUF563: Protein of un 40.8 1.2E+02 0.0027 23.2 6.6 74 4-85 102-179 (206)
427 PRK14706 glycogen branching en 40.5 24 0.00053 33.2 2.8 31 13-43 209-239 (639)
428 COG1105 FruK Fructose-1-phosph 39.8 42 0.00091 28.5 3.8 38 7-44 131-169 (310)
429 cd01473 vWA_CTRP CTRP for CS 39.6 57 0.0012 25.4 4.4 38 5-42 110-147 (192)
430 TIGR02100 glgX_debranch glycog 39.4 22 0.00048 33.8 2.3 26 18-43 242-267 (688)
431 PRK12595 bifunctional 3-deoxy- 39.4 43 0.00093 29.1 3.9 26 21-46 274-299 (360)
432 TIGR00853 pts-lac PTS system, 39.1 39 0.00084 23.1 2.9 54 6-71 6-59 (95)
433 COG4100 Cystathionine beta-lya 38.8 24 0.00051 30.0 2.1 51 19-75 184-236 (416)
434 PRK13397 3-deoxy-7-phosphohept 38.5 54 0.0012 26.9 4.2 28 20-47 170-197 (250)
435 PF04309 G3P_antiterm: Glycero 37.7 29 0.00063 26.8 2.3 30 17-46 27-58 (175)
436 PLN02784 alpha-amylase 37.3 29 0.00062 33.8 2.6 29 14-42 561-589 (894)
437 PF00793 DAHP_synth_1: DAHP sy 36.8 40 0.00086 28.0 3.2 40 9-48 169-208 (270)
438 PRK14705 glycogen branching en 36.7 28 0.00061 35.3 2.6 32 12-43 806-837 (1224)
439 TIGR02104 pulA_typeI pullulana 35.3 26 0.00056 32.8 2.1 24 20-43 228-251 (605)
440 cd01482 vWA_collagen_alphaI-XI 35.0 88 0.0019 23.3 4.7 34 4-41 104-137 (164)
441 TIGR00381 cdhD CO dehydrogenas 34.4 52 0.0011 28.8 3.6 22 22-43 228-249 (389)
442 PLN02960 alpha-amylase 34.2 35 0.00076 33.3 2.7 30 13-42 458-487 (897)
443 TIGR00715 precor6x_red precorr 33.9 33 0.00071 28.3 2.2 28 18-46 50-77 (256)
444 PRK13396 3-deoxy-7-phosphohept 33.7 48 0.001 28.7 3.3 32 17-48 254-285 (352)
445 PRK00923 sirohydrochlorin coba 33.5 45 0.00097 23.9 2.7 38 6-43 3-40 (126)
446 COG1387 HIS2 Histidinol phosph 33.2 58 0.0013 26.4 3.6 35 14-48 166-201 (237)
447 PRK12568 glycogen branching en 32.9 39 0.00085 32.3 2.8 30 13-42 311-340 (730)
448 PF03599 CdhD: CO dehydrogenas 32.1 83 0.0018 27.6 4.5 61 1-72 119-179 (386)
449 PF02110 HK: Hydroxyethylthiaz 32.0 45 0.00098 27.3 2.7 36 7-42 52-87 (246)
450 PLN02757 sirohydrochlorine fer 31.5 46 0.001 25.1 2.5 41 4-44 13-53 (154)
451 PRK03705 glycogen debranching 31.0 43 0.00092 31.7 2.7 25 19-43 240-264 (658)
452 PF14871 GHL6: Hypothetical gl 30.3 50 0.0011 24.2 2.5 20 20-39 43-62 (132)
453 TIGR02455 TreS_stutzeri trehal 29.7 43 0.00093 31.5 2.4 29 14-42 123-151 (688)
454 COG1954 GlpP Glycerol-3-phosph 28.6 43 0.00093 25.8 1.9 30 17-46 31-62 (181)
455 cd00287 ribokinase_pfkB_like r 28.5 80 0.0017 23.9 3.6 22 22-43 72-93 (196)
456 KOG0369 Pyruvate carboxylase [ 28.2 57 0.0012 30.9 2.9 34 15-48 162-198 (1176)
457 TIGR02401 trehalose_TreY malto 28.2 49 0.0011 32.1 2.7 29 14-42 58-86 (825)
458 COG1936 Predicted nucleotide k 28.1 49 0.0011 25.7 2.1 70 8-77 2-81 (180)
459 cd01467 vWA_BatA_type VWA BatA 27.3 1.6E+02 0.0034 22.1 5.0 34 5-39 104-137 (180)
460 cd01480 vWA_collagen_alpha_1-V 27.2 1.6E+02 0.0034 22.6 5.0 40 2-41 108-147 (186)
461 CHL00108 psbJ photosystem II p 27.1 43 0.00093 18.9 1.2 13 2-14 6-18 (40)
462 COG1038 PycA Pyruvate carboxyl 26.7 67 0.0014 31.2 3.1 32 16-47 140-171 (1149)
463 TIGR00034 aroFGH phospho-2-deh 26.5 1.1E+02 0.0025 26.4 4.3 30 19-48 237-268 (344)
464 PF00815 Histidinol_dh: Histid 26.5 46 0.001 29.5 2.0 56 11-73 143-200 (412)
465 PF00150 Cellulase: Cellulase 26.4 64 0.0014 26.2 2.8 26 19-44 60-85 (281)
466 COG0352 ThiE Thiamine monophos 26.3 62 0.0013 25.9 2.5 20 22-41 53-72 (211)
467 cd01984 AANH_like Adenine nucl 26.1 74 0.0016 20.7 2.6 26 21-46 35-60 (86)
468 PLN02681 proline dehydrogenase 26.1 62 0.0013 29.2 2.8 25 20-44 219-243 (455)
469 PF07498 Rho_N: Rho terminatio 25.9 37 0.0008 19.4 0.9 15 22-36 6-20 (43)
470 PF05913 DUF871: Bacterial pro 24.7 73 0.0016 27.7 2.9 28 17-44 43-70 (357)
471 PRK14511 maltooligosyl trehalo 24.3 65 0.0014 31.6 2.7 29 14-42 62-90 (879)
472 PF00586 AIRS: AIR synthase re 24.2 90 0.002 20.9 2.8 37 2-38 52-92 (96)
473 COG0648 Nfo Endonuclease IV [D 24.2 1.1E+02 0.0023 25.7 3.6 40 5-44 137-179 (280)
474 KOG4465 Uncharacterized conser 23.5 2E+02 0.0043 25.1 5.1 41 6-46 522-565 (598)
475 COG2052 Uncharacterized protei 22.9 86 0.0019 20.6 2.2 22 21-44 28-49 (89)
476 PF14488 DUF4434: Domain of un 22.8 92 0.002 23.8 2.8 23 18-40 62-84 (166)
477 TIGR01361 DAHP_synth_Bsub phos 22.1 1.8E+02 0.0038 24.0 4.6 27 20-46 180-206 (260)
478 cd00198 vWFA Von Willebrand fa 22.0 2.4E+02 0.0052 19.8 5.0 35 4-39 102-136 (161)
479 COG0552 FtsY Signal recognitio 21.4 77 0.0017 27.3 2.3 77 4-85 222-306 (340)
480 KOG0471 Alpha-amylase [Carbohy 20.8 60 0.0013 30.0 1.7 28 15-42 82-109 (545)
481 TIGR00789 flhB_rel flhB C-term 20.4 95 0.0021 20.7 2.2 20 23-42 29-48 (82)
482 COG4770 Acetyl/propionyl-CoA c 20.4 1.1E+02 0.0024 28.3 3.2 32 16-47 134-165 (645)
No 1
>PLN02590 probable tyrosine decarboxylase
Probab=100.00 E-value=5.7e-52 Score=368.63 Aligned_cols=224 Identities=58% Similarity=1.078 Sum_probs=203.5
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+|+.|++||+|+|||.+|++|||++|+++|++||+|+|||||+|+.++++++++.++.+++.|||+++|+||||++|++|
T Consensus 284 ~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~c 363 (539)
T PLN02590 284 KGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTC 363 (539)
T ss_pred cCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCE
Confidence 58899999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred eEEEeeCc-----------ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 81 CCLWATNP-----------EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 81 g~l~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
|+++++++ +|+..........+++.+|+++++||++++++|.+|+.+|.+|+++++++..+++++|.+.
T Consensus 364 g~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~ 443 (539)
T PLN02590 364 SPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDY 443 (539)
T ss_pred EEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999864 3443222112234667889999999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEE
Q 048438 150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229 (239)
Q Consensus 150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~ 229 (239)
|++.++|+++.++.+++|||++.+.. .+.++.|++|+++.++|+++|.++++++.++|+.+||++
T Consensus 444 l~~~~~fel~~~~~l~iVcFr~~~~~---------------~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~ 508 (539)
T PLN02590 444 VAQDPSFEVVTTRYFSLVCFRLAPVD---------------GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFA 508 (539)
T ss_pred HhcCCCeEEecCCceEEEEEEecCCC---------------CCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEE
Confidence 99999999999999999999998743 234567899999999999999999999999999999999
Q ss_pred ecCCCCCcCC
Q 048438 230 TGATLTEERH 239 (239)
Q Consensus 230 ~~~~~t~~~~ 239 (239)
++||.|+++|
T Consensus 509 i~n~~T~~~d 518 (539)
T PLN02590 509 VGAPLTEEKH 518 (539)
T ss_pred ecCCCCCHHH
Confidence 9999999876
No 2
>PLN02880 tyrosine decarboxylase
Probab=100.00 E-value=1.3e-49 Score=352.84 Aligned_cols=224 Identities=59% Similarity=1.094 Sum_probs=200.8
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+|++|++||+|+|||.+|++|||++|+++|++||+|+|||||||++++..++++..+.++++|||+++|+||||++|++|
T Consensus 236 ~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~ 315 (490)
T PLN02880 236 SGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDC 315 (490)
T ss_pred CCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccE
Confidence 58999999999999999999999999999999999999999999999988888888889888999999999999999999
Q ss_pred eEEEeeCcc-----------cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 81 CCLWATNPE-----------YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 81 g~l~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
|+++++++. |+...........++..|+++.|||++++++|..++.+|.+++++++++..++++++.+.
T Consensus 316 g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~ 395 (490)
T PLN02880 316 SLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQL 395 (490)
T ss_pred EEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 999998642 333221111234566778899999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEE
Q 048438 150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229 (239)
Q Consensus 150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~ 229 (239)
|++.++++++.++.+++|||++++.. .+.+..|++|+++.++|+++|.++++.+.++|+.++|++
T Consensus 396 l~~~~~~el~~~~~~~iv~Fr~~~~~---------------~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~ 460 (490)
T PLN02880 396 VAQDSRFEVVTPRIFSLVCFRLVPPK---------------NNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFA 460 (490)
T ss_pred HhcCCCEEEecCCceEEEEEEEeCCC---------------CChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEE
Confidence 99999999999999999999998743 244567899999999999999999999999999999999
Q ss_pred ecCCCCCcCC
Q 048438 230 TGATLTEERH 239 (239)
Q Consensus 230 ~~~~~t~~~~ 239 (239)
++||+|+++|
T Consensus 461 ~~n~~tt~~d 470 (490)
T PLN02880 461 VGAPLTEERH 470 (490)
T ss_pred ecCCCCCHHH
Confidence 9999999765
No 3
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=100.00 E-value=1.5e-45 Score=327.80 Aligned_cols=238 Identities=21% Similarity=0.362 Sum_probs=198.0
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+|..|++|++++|||++|++|||++|+++|+++|+|+||||||+++.++.++++..+.+++++||+++|+|||+++|+||
T Consensus 262 ~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~ 341 (522)
T TIGR03799 262 QNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGA 341 (522)
T ss_pred CCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCccc
Confidence 36789999999999999999999999999999999999999999998888888887888878999999999999999999
Q ss_pred eEEEeeCcccccccccC-----CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 81 CCLWATNPEYLKNKATE-----SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
|+++++++..+...... .....++.+++++++|++.++++|.+++.+|.+|+++++++..+++++|.+.|++.|+
T Consensus 342 G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~ 421 (522)
T TIGR03799 342 GMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPD 421 (522)
T ss_pred EEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999876443222111 0112345568899999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-------CEeEEEE
Q 048438 156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-------GIYAIRF 228 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------g~~~lR~ 228 (239)
|+++.++.+++|||++.|........ ...+.......+..|++|++++++++++|..|++.+..+ +..++|+
T Consensus 422 ~el~~~p~l~iv~Fr~~p~~~~~~l~-~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~ 500 (522)
T TIGR03799 422 FELVTEPELCLLTYRYVPEEVQQALA-KADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRV 500 (522)
T ss_pred eEEecCCCccEEEEEEeChhhccccc-ccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEE
Confidence 99999999999999998754321000 000011112235579999999999999999999998876 4589999
Q ss_pred EecCCCCCcCC
Q 048438 229 ATGATLTEERH 239 (239)
Q Consensus 229 ~~~~~~t~~~~ 239 (239)
+++||.|+++|
T Consensus 501 ~~~np~tt~~~ 511 (522)
T TIGR03799 501 VLANPLTTHEI 511 (522)
T ss_pred EecCCCCCHHH
Confidence 99999999875
No 4
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-45 Score=305.13 Aligned_cols=215 Identities=49% Similarity=0.899 Sum_probs=201.4
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+|++||+|++|.|||.++++|+|.+|..+|+++|+|+||||||+|.+..+++++.+.+|++.|||+.+++|||+.+-..|
T Consensus 232 rGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDC 311 (511)
T KOG0628|consen 232 RGLIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDC 311 (511)
T ss_pred CCCccEEEEEeecCccccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeee
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCcc-----------cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 81 CCLWATNPE-----------YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 81 g~l~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
+.+|+++.. ||..... ....|+..|+++.+|||+++++|..++.+|.++++++++++.+|++.+.+.
T Consensus 312 s~lWvkd~~~~~~~~~vdp~yL~h~~~--~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~l 389 (511)
T KOG0628|consen 312 SPLWVKDGTKLSRAFNVDPLYLKHAYQ--GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETL 389 (511)
T ss_pred ecceeecCceeeeeeecChHhhcchhh--ccCCCccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999998753 3333322 236778899999999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEE
Q 048438 150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229 (239)
Q Consensus 150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~ 229 (239)
+.+.+.||+..+...++||||+++. |++|++++++++.+|++++.+..+.|+.+||++
T Consensus 390 v~~d~~FE~~~~~~lgLvcFRlk~~----------------------N~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~ 447 (511)
T KOG0628|consen 390 VRADPRFEIVNKRILGLVCFRLKGD----------------------NEINEALLNRLNSSGRIHLVPASLHGKFVLRFA 447 (511)
T ss_pred hhcCCcceeecccccceeEEeecCC----------------------cHHHHHHHHHHHhcCcEEEEEeeecceEEEEEE
Confidence 9999999999999999999999885 799999999999999999999999999999999
Q ss_pred ecCCCCCcCC
Q 048438 230 TGATLTEERH 239 (239)
Q Consensus 230 ~~~~~t~~~~ 239 (239)
++++.|+++|
T Consensus 448 V~s~~t~~~d 457 (511)
T KOG0628|consen 448 VCSPLTNESD 457 (511)
T ss_pred ecCCCCcHHH
Confidence 9999999876
No 5
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=100.00 E-value=1.5e-39 Score=279.99 Aligned_cols=172 Identities=38% Similarity=0.723 Sum_probs=149.2
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+|++|++|++|+|||.+|++|||++|+++|+++++|+|||||+|+.++..++.+....+++++||+++|+||||++|++|
T Consensus 191 ~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~ 270 (373)
T PF00282_consen 191 NGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGC 270 (373)
T ss_dssp TTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-
T ss_pred ccccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccc
Confidence 47899999999999999999999999999999999999999999988888888888999999999999999999999999
Q ss_pred eEEEeeCccccccccc-----------CCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 81 CCLWATNPEYLKNKAT-----------ESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
|+++++++..+..... ......++.+++++++|+++++++|..++.+|.+|+++++++..+++++|.+.
T Consensus 271 ~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~ 350 (373)
T PF00282_consen 271 GVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADR 350 (373)
T ss_dssp EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEeecccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988654432221 11112345567889999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEEcCCCeeEEEEEEc
Q 048438 150 VSGDKRFEVVFPCHFAVVCFRVS 172 (239)
Q Consensus 150 l~~~~g~~~~~~~~~~iv~f~~~ 172 (239)
|++.++++++.++.+++|||+++
T Consensus 351 l~~~~~~el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 351 LRKDPRFELVNEPDLNIVCFRYK 373 (373)
T ss_dssp HHTSTTEEESSTTSSSEEEEEES
T ss_pred HHhCCCEEEEcCCCceEEEEEeC
Confidence 99999999999999999999985
No 6
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-38 Score=263.06 Aligned_cols=231 Identities=24% Similarity=0.383 Sum_probs=197.2
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
.|..||+|.+|+|||+.|++|||..|+++|++|++|+|||||+|+|.+....+|..+.+++++||+++++||++++|..|
T Consensus 250 kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqC 329 (510)
T KOG0629|consen 250 KGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQC 329 (510)
T ss_pred cCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCcchh
Confidence 47889999999999999999999999999999999999999999999988888888999999999999999999999999
Q ss_pred eEEEeeCc-----------ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 81 CCLWATNP-----------EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 81 g~l~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
+.++++.. .|+.+....+..++|..+...++||+...+++|..++.-|.+|+++.++++.++|+||.++
T Consensus 330 sa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~ 409 (510)
T KOG0629|consen 330 SAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDR 409 (510)
T ss_pred hHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 99998643 4555544444455667788999999999999999999999999999999999999999999
Q ss_pred HhCCCCeEEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC-EeEE
Q 048438 150 VSGDKRFEVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-IYAI 226 (239)
Q Consensus 150 l~~~~g~~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-~~~l 226 (239)
|++.++++.+.. |+.-.|||++.|+.++. -+..++-.+...++...+.+++.++|..+++++.... ..++
T Consensus 410 lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~-------~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nff 482 (510)
T KOG0629|consen 410 LREREGFEMLFELEPEHVNVCFWYVPPSLRG-------WQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFF 482 (510)
T ss_pred HHhcccceehhcCCCceEEEeeccCchHhcc-------CcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchh
Confidence 999989887654 67678899998865432 1223344566677778899999999999999988754 4689
Q ss_pred EEEecCCCCCcC
Q 048438 227 RFATGATLTEER 238 (239)
Q Consensus 227 R~~~~~~~t~~~ 238 (239)
|+++.|+..++.
T Consensus 483 r~v~sn~a~~~a 494 (510)
T KOG0629|consen 483 RMVISNPALTEA 494 (510)
T ss_pred heecccchhhhh
Confidence 999999965543
No 7
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=100.00 E-value=7.3e-36 Score=268.14 Aligned_cols=222 Identities=16% Similarity=0.253 Sum_probs=175.4
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHH---HHhCC--EEEEeccccccc--ccCc----------------------
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVA---KQFGI--WVHVDAAYAGSA--CIFP---------------------- 51 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~---~~~gi--~lhvD~A~~~~~--~~~~---------------------- 51 (239)
+|..|++||+|+|||.+|++|||++|+++| +++|+ |+|||||+|+.+ +.++
T Consensus 275 ~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~ 354 (608)
T TIGR03811 275 EKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFT 354 (608)
T ss_pred cCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccc
Confidence 477889999999999999999999999999 67898 699999999864 2222
Q ss_pred --------ccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcc----------cccccccCCCCccCCCCceecCCC
Q 048438 52 --------EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPE----------YLKNKATESKPVVDYKDWQITLSR 113 (239)
Q Consensus 52 --------~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~ 113 (239)
+.+..++++++|||+++|+|||++.|++||++++|++. |+...... .......++++++|
T Consensus 355 ~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~--~p~~~g~~~legSR 432 (608)
T TIGR03811 355 EKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGAD--IPALLGAYILEGSK 432 (608)
T ss_pred cccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhcccccc--CcccccccceecCC
Confidence 33445678899999999999999999999999998763 22211100 00123446777777
Q ss_pred C-CChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhC------CCCeEE--EcCCCeeEEEEEEcCCCcchhhhh
Q 048438 114 S-FRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSG------DKRFEV--VFPCHFAVVCFRVSPLPVLMDKLK 182 (239)
Q Consensus 114 ~-~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~------~~g~~~--~~~~~~~iv~f~~~~~~~~~~~~~ 182 (239)
+ ++++++|.+++.+ |.+|+++++++..++++++.+.|++ .+.+++ +.+|++|||||++.+.+.
T Consensus 433 ~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g~------ 506 (608)
T TIGR03811 433 AGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKGN------ 506 (608)
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecCCC------
Confidence 5 6799999999998 9999999999999999999999988 456776 778999999999987653
Q ss_pred hhhcccccccHHHHHHHHHHHHHHHH------hcCcEEEEEEEEC--------------------------CEeEEEEEe
Q 048438 183 TKYENCLLSEEEQINEFNRELLESIN------ASGKAYMTNVVLG--------------------------GIYAIRFAT 230 (239)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~l~~~l~------~~g~~~~~~~~~~--------------------------g~~~lR~~~ 230 (239)
.+.+..|++|+++.+++. .+..++++.|.+. +..+||.++
T Consensus 507 --------~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 578 (608)
T TIGR03811 507 --------DDLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASV 578 (608)
T ss_pred --------ccHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEe
Confidence 345778999999999886 2344566666542 237999999
Q ss_pred cCCCCCcC
Q 048438 231 GATLTEER 238 (239)
Q Consensus 231 ~~~~t~~~ 238 (239)
|+|...++
T Consensus 579 m~p~~~~~ 586 (608)
T TIGR03811 579 MTPYMNDK 586 (608)
T ss_pred cCcccCCh
Confidence 99988764
No 8
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=100.00 E-value=1.4e-35 Score=259.17 Aligned_cols=213 Identities=16% Similarity=0.214 Sum_probs=168.6
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHh------CCEEEEecccccccccCc--ccccccCCCCCcceEEEcCcccCC
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAGSACIFP--EFRHFIDGVEGADSFSLNAHKWFF 75 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~------gi~lhvD~A~~~~~~~~~--~~~~~~~~~~~~Ds~~~~~hK~l~ 75 (239)
.|++|++++|||++|++|||++|+++|+++ |+|+||||||+++++++. +.+..+. ++++||+++|+|||++
T Consensus 186 ~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-~~~~DSis~s~HK~~~ 264 (431)
T TIGR01788 186 NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-LPRVKSINVSGHKYGL 264 (431)
T ss_pred CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-CCCceEEEECchhccC
Confidence 378999999999999999999999999999 999999999998887653 2222233 5679999999999999
Q ss_pred CcccceEEEeeCcccccccccCCCCccC--CCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 76 ATLDCCCLWATNPEYLKNKATESKPVVD--YKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 76 ~P~g~g~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
+|+|+|+++++++..+.+.......+.. ...++++++|++ ++++.|..++.+|.+|+++++++..++++++.++|++
T Consensus 265 ~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~ 344 (431)
T TIGR01788 265 VYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAK 344 (431)
T ss_pred CCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999876433222111111111 123567788885 7799999999999999999999999999999999999
Q ss_pred CCCeEEEcC-CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE---EEEEEECCEeEEEE
Q 048438 153 DKRFEVVFP-CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY---MTNVVLGGIYAIRF 228 (239)
Q Consensus 153 ~~g~~~~~~-~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~g~~~lR~ 228 (239)
.++|+++.+ +.+++|||++++.+. . +..+..+.++|.++|..+ .+++.++|+.++|+
T Consensus 345 ~~~~el~~~~~~~~iV~Fr~~~~~~---------------~----~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~ 405 (431)
T TIGR01788 345 LGPFEIISDGSGIPLVAFKLKDDAD---------------P----GYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRI 405 (431)
T ss_pred CCCEEEeeCCCCceEEEEEeCCCCC---------------C----CcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEE
Confidence 999999987 799999999986320 0 112457888888898874 55555889999999
Q ss_pred EecCCCCC
Q 048438 229 ATGATLTE 236 (239)
Q Consensus 229 ~~~~~~t~ 236 (239)
+++++.+.
T Consensus 406 ~~~~~~~~ 413 (431)
T TIGR01788 406 VVREGFSR 413 (431)
T ss_pred EecCCCCH
Confidence 98766654
No 9
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-35 Score=259.48 Aligned_cols=221 Identities=25% Similarity=0.390 Sum_probs=180.5
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc-cCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVEGADSFSLNAHKWFFATLDCCCLWA 85 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~-~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~ 85 (239)
+||+++|||.+|.+|||++|+++|+++++|+|||||+|+..+++.+.+.. ..++++||||++|+|||+++|+|||++++
T Consensus 210 ~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~ 289 (460)
T COG0076 210 VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLF 289 (460)
T ss_pred eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEE
Confidence 59999999999999999999999999999999999999999999877765 68888999999999999999999999999
Q ss_pred eCcccccccccCCCCcc---CCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 86 TNPEYLKNKATESKPVV---DYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 86 ~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
++++.+.........+. +...+++.++|.. .+++.|..++.+|.+|+++.+++..++++++.+.|++.+.++++++
T Consensus 290 rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~ 369 (460)
T COG0076 290 RDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNE 369 (460)
T ss_pred ECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecC
Confidence 99854433322111111 2234566666664 7899999999999999999999999999999999999877999999
Q ss_pred CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438 162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER 238 (239)
Q Consensus 162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~ 238 (239)
|.+|+|+|++++... ......+..+..+..+..++..++..++..+.+.++.++++...++.+..+
T Consensus 370 p~l~~V~fr~~~~~~-----------~~~~~~~~~~~~gw~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 435 (460)
T COG0076 370 PELPIVAFRLKDDED-----------TLADLSERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDR 435 (460)
T ss_pred CccceEEEEcCCccc-----------chhchHHHHHhcCceeecccCCccceeeeeeEEeeeeeehhhcchhhhhhh
Confidence 999999999965310 011334555566667777777778888888888889999999888776543
No 10
>PLN02263 serine decarboxylase
Probab=100.00 E-value=1.3e-32 Score=239.77 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=140.2
Q ss_pred CCccEEEEEecCCCCcccccChhHHHHHHHHhCC-----EEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC
Q 048438 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGI-----WVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA 76 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi-----~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~ 76 (239)
+.+|++|++|+|||.+|++|||++|+++|+++|+ |+|||||+||..+++.+....+.....+||+++|+|||+++
T Consensus 226 ~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~ 305 (470)
T PLN02263 226 KDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGC 305 (470)
T ss_pred CCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCC
Confidence 3469999999999999999999999999999997 99999999999887644333344445699999999999999
Q ss_pred cccceEEEeeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 77 TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 77 P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
|++||+++++++ ++.... ....++...+.++.++|++ .++++|..++.+|.+|++++++++.++++++.+.|++. |
T Consensus 306 P~~cgvll~R~~-~~~~~~-~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g 382 (470)
T PLN02263 306 PMPCGVQITRME-HINVLS-SNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-G 382 (470)
T ss_pred CcCEEEEEEehh-hHhhhc-cChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 999999999863 332111 1112333345678889996 58999999999999999999999999999999999997 8
Q ss_pred eEEEcCCCeeEEEEEEcC
Q 048438 156 FEVVFPCHFAVVCFRVSP 173 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~ 173 (239)
++++.+|.+++|+|+-+.
T Consensus 383 ~~~~~~p~s~~V~f~~p~ 400 (470)
T PLN02263 383 ISAMLNELSSTVVFERPK 400 (470)
T ss_pred CeEEeCCCceEEEEecCc
Confidence 888888899999998543
No 11
>PRK02769 histidine decarboxylase; Provisional
Probab=100.00 E-value=6.6e-32 Score=233.01 Aligned_cols=169 Identities=24% Similarity=0.370 Sum_probs=140.4
Q ss_pred CCccEEEEEecCCCCcccccChhHHHHHHHHhC---CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFG---IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g---i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~ 78 (239)
|..|++|++++|||++|++||+++|+++|++|| +|+||||||+++.+++.+....++...++||+++|+|||+++|+
T Consensus 158 ~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~ 237 (380)
T PRK02769 158 KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPM 237 (380)
T ss_pred CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCC
Confidence 567999999999999999999999999999998 69999999999998765433223322369999999999999999
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
|||++++++. ++..... ...+++..+++++++|+ +.++++|.+++.+|.+|++++++++.++++++.++|++. |++
T Consensus 238 g~G~l~~r~~-~~~~~~~-~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~ 314 (380)
T PRK02769 238 PCGIVLAKKK-YVERISV-DVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIP 314 (380)
T ss_pred CcEEEEEehh-hhhhccc-CccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence 9999999863 3333221 12233334567788886 678999999999999999999999999999999999885 999
Q ss_pred EEcCCCeeEEEEEEcC
Q 048438 158 VVFPCHFAVVCFRVSP 173 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~ 173 (239)
++.+|.+++|+|+.+.
T Consensus 315 ~~~~p~~~~v~f~~~~ 330 (380)
T PRK02769 315 AWRNPNSITVVFPCPS 330 (380)
T ss_pred EEcCCCceEEEEcCCC
Confidence 9999999999998553
No 12
>PLN03032 serine decarboxylase; Provisional
Probab=99.97 E-value=4.2e-31 Score=226.78 Aligned_cols=167 Identities=21% Similarity=0.298 Sum_probs=139.4
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhC-----CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFG-----IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g-----i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~ 78 (239)
.|++|++++|||++|++|||++|+++|+++| +|+||||||+++.+++......++....+||+++|+|||+++|+
T Consensus 161 ~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~ 240 (374)
T PLN03032 161 KPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPM 240 (374)
T ss_pred CCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCc
Confidence 6899999999999999999999999999996 59999999999988864322212222359999999999999999
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
|||+++++++ ++..... ...++...+++++++|+ +.++++|..++.+|.+|++++++++.++++++.+.|++. +++
T Consensus 241 g~G~ll~r~~-~~~~~~~-~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~ 317 (374)
T PLN03032 241 PCGVALTRKK-HVKALSQ-NVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLT 317 (374)
T ss_pred CeEEEEEEch-hhHhhcc-CCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 9999999863 3332221 22344445678899987 689999999999999999999999999999999999986 899
Q ss_pred EEcCCCeeEEEEEEcC
Q 048438 158 VVFPCHFAVVCFRVSP 173 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~ 173 (239)
++..|.+++|+|+-+.
T Consensus 318 ~~~~p~~~~V~f~~~~ 333 (374)
T PLN03032 318 CRLNELSSTVVFERPM 333 (374)
T ss_pred EEECCCceEEEEcCCC
Confidence 8888899999999764
No 13
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.6e-29 Score=215.04 Aligned_cols=203 Identities=15% Similarity=0.165 Sum_probs=155.2
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|++++.+|.+|++.|+++|+++||++|+|++|||||++++++++ ++.++ ||++++|+||||++|.|+|+|
T Consensus 162 ~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~id-----v~~l~-~Df~afsgHKwl~gP~GiGvL 235 (405)
T COG0520 162 KTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPID-----VQELG-CDFLAFSGHKWLLGPTGIGVL 235 (405)
T ss_pred CceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCC-----chhcC-CCEEEEcccccccCCCceEEE
Confidence 467999999999999999999999999999999999999999999998 66664 999999999999999999999
Q ss_pred EeeCccccccccc--CCCCc-----------cCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKAT--ESKPV-----------VDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFER 148 (239)
Q Consensus 84 ~~~~~~~l~~~~~--~~~~~-----------~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~ 148 (239)
|+++ +.+....+ ..+.. +...++.++.|+. ...+.+-.+++.+...|++++.++.++|++++.+
T Consensus 236 y~r~-~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~ 314 (405)
T COG0520 236 YVRK-ELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLE 314 (405)
T ss_pred EEch-HHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9975 34433211 11111 1112334444544 2346666778877777888999999999999999
Q ss_pred HHhCCCCeEEEcCC---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC---
Q 048438 149 LVSGDKRFEVVFPC---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG--- 222 (239)
Q Consensus 149 ~l~~~~g~~~~~~~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g--- 222 (239)
.|+++|++++++++ +.++++|.+++... ..+...|.++| +.+..-....
T Consensus 315 ~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~------------------------~dv~~~L~~~g-I~vr~g~~ca~p~ 369 (405)
T COG0520 315 GLSELPGVEIYGPPDADRGGIVSFNVKGIHP------------------------HDVATLLDEKG-IAVRAGHHCAQPL 369 (405)
T ss_pred HHhcCCCeEEecCCcccCceEEEEEeCCCCH------------------------HHHHHHHHhCC-eEEEeccccccHH
Confidence 99999999999975 68999999987531 25566777778 4332211111
Q ss_pred ------EeEEEEEecCCCCCcC
Q 048438 223 ------IYAIRFATGATLTEER 238 (239)
Q Consensus 223 ------~~~lR~~~~~~~t~~~ 238 (239)
...+|+|++-+||.+|
T Consensus 370 ~~~~~~~~~iR~S~~~YNt~ed 391 (405)
T COG0520 370 HRLLGVDATIRASLHLYNTEED 391 (405)
T ss_pred HHhcCCCCceEEEEeecCCHHH
Confidence 1239999999999875
No 14
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.96 E-value=9.7e-29 Score=211.58 Aligned_cols=188 Identities=35% Similarity=0.660 Sum_probs=157.1
Q ss_pred CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
|..|.+|++++++|.+|.++|+++|+++|+++|+|+|||+||+.+.++.+........++++|++++++|||+++|.|+|
T Consensus 146 ~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g 225 (345)
T cd06450 146 GLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCS 225 (345)
T ss_pred CCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchH
Confidence 55788999999999999999999999999999999999999999887665433222334469999999999999999999
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
+++++ ++++|.+++.++.++++++.++..++++++.+.|+++++++++.+
T Consensus 226 ~~~~~------------------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 275 (345)
T cd06450 226 AVLVR------------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE 275 (345)
T ss_pred HHHHH------------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 98764 577888999999999999999999999999999999999999888
Q ss_pred CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438 162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER 238 (239)
Q Consensus 162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~ 238 (239)
++.++++|++++.. ..+..+..+.++|.++|.++++.....+..++|+++++++|+++
T Consensus 276 ~~~~iv~f~~~~~~-------------------~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~ 333 (345)
T cd06450 276 PNLSLVCFRLKPSV-------------------KLDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRD 333 (345)
T ss_pred CceeEEEEEECCcc-------------------hhhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHH
Confidence 88999999987521 00123347788888888887877666678899999999875544
No 15
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.91 E-value=3e-23 Score=179.29 Aligned_cols=203 Identities=24% Similarity=0.313 Sum_probs=142.7
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc-cccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
+.+|++++++|.+|.++|+++|+++|+++|+++|||+||+++.+++.... .......++|++++++|||+++|.++|++
T Consensus 152 ~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~ 231 (371)
T PRK13520 152 TIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGI 231 (371)
T ss_pred CEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEE
Confidence 55677888999999999999999999999999999999998776542211 01111235999999999999999999999
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
+++++.++...............+...+++. ...++++.+++.++.++++++.++..++++++.+.|+++ |++++.++
T Consensus 232 ~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 310 (371)
T PRK13520 232 LFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEP 310 (371)
T ss_pred EEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCC
Confidence 9876544433211101111111112222332 345677888888888999999999999999999999987 99865567
Q ss_pred CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
..++++|.+++. ..+.++|.++|.. +.. ..+..++|++++..+|++
T Consensus 311 ~~~~v~~~~~~~--------------------------~~v~~~L~~~gi~-v~~--~~~~~~iRis~~~~~t~e 356 (371)
T PRK13520 311 VLNIVAFDDPNP--------------------------DEVREKLRERGWR-VSV--TRCPEALRIVCMPHVTRE 356 (371)
T ss_pred CceEEEEecCCH--------------------------HHHHHHHHHCCce-ecc--CCCCCEEEEEEECCCCHH
Confidence 788999887531 1556667666654 322 223467999988766554
No 16
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.91 E-value=5.3e-23 Score=177.97 Aligned_cols=203 Identities=23% Similarity=0.295 Sum_probs=141.7
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc----cccCCCCCcceEEEcCcccCCCcccce
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR----HFIDGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~----~~~~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
..++.++++|.+|.++|+++|+++||++|+|+|||+||+++.+++..+. .......++|++++++|||+++|.++|
T Consensus 155 ~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G 234 (373)
T TIGR03812 155 IGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAG 234 (373)
T ss_pred EEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCce
Confidence 4456666889999999999999999999999999999997765432110 001112258999999999999999998
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
.+++.+++++...............+...+++. ...+.++.+++.++.++++++.++..++++++++.|+++ |++.+.
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 313 (373)
T TIGR03812 235 GILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI-GFEPVI 313 (373)
T ss_pred EEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEc
Confidence 888766655433211111101111122223333 345677788898899999999999999999999999997 666555
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER 238 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~ 238 (239)
++..++|+|++++. . .+.++|.++|.+ +... .+..++|++++.++|.+|
T Consensus 314 ~~~~~~v~~~~~~~----------------------~----~v~~~L~~~gi~-v~~~--~~~~~iRis~~~~~t~ed 362 (373)
T TIGR03812 314 EPVLNIVAFEVDDP----------------------E----EVRKKLRDRGWY-VSVT--RCPKALRIVVMPHVTREH 362 (373)
T ss_pred CCCceEEEEEeCCH----------------------H----HHHHHHHHCCce-eccC--CCCCEEEEEEECCCCHHH
Confidence 67789999987531 1 566677777654 3322 245689999988776653
No 17
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.91 E-value=2.1e-23 Score=180.50 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=143.0
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+.+|++++.+|.+|.+.|+++|+++||++|++++||++|+.+.++++ ++.+ ++|++++++|| +++|.|+|++
T Consensus 139 ~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id-----~~~~-~~D~~~~s~~K-l~gp~G~g~l 211 (371)
T PF00266_consen 139 DTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPID-----LDEL-GADFLVFSSHK-LGGPPGLGFL 211 (371)
T ss_dssp TESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS-------TTTT-TESEEEEESTS-TTSSSTEEEE
T ss_pred ccceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccc-----cccc-ccceeeecccc-cCCCCchhhh
Confidence 467899999999999999999999999999999999999999999887 5555 49999999999 8999999999
Q ss_pred EeeCccccccc---ccCCCCccC----------CCCceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNK---ATESKPVVD----------YKDWQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFER 148 (239)
Q Consensus 84 ~~~~~~~l~~~---~~~~~~~~~----------~~~~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~ 148 (239)
|+++. .+... .... ...+ ...+.++.|+.. ..+.+..+++.+...|++++.++..++++++.+
T Consensus 212 ~v~~~-~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~ 289 (371)
T PF00266_consen 212 YVRPE-AIERLRPAKPGG-GYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLRE 289 (371)
T ss_dssp EEEHH-HHHHHHTSSSSS-STTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhh-hhhccccccccc-cccccccchhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHh
Confidence 99752 22211 1111 1000 111223333331 224455677777667888999999999999999
Q ss_pred HHhCCCCeEEEcC----CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC--
Q 048438 149 LVSGDKRFEVVFP----CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-- 222 (239)
Q Consensus 149 ~l~~~~g~~~~~~----~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-- 222 (239)
.|+++++++++.+ ...++++|.+++... ..+.+.|.++ .+.+.. ....
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------------~~~~~~L~~~-~I~~~~-G~~~~~ 343 (371)
T PF00266_consen 290 ALEELPGIEVLGPDDEPRRPSIVSFNLPGSDA------------------------DDVVKYLEER-GIAVST-GSACAG 343 (371)
T ss_dssp HHHHTTTEEESSSSCGGBGTTEEEEEETTSSH------------------------HHHHHHHHHH-TEEEEE-STTTCH
T ss_pred hhhcCCceeEeeecccccccceEEEeecCCCH------------------------HHHHHHHhhc-CEEEec-cCcccH
Confidence 9999999998774 246799999966431 2566677777 444443 2111
Q ss_pred --------EeEEEEEecCCCCCcC
Q 048438 223 --------IYAIRFATGATLTEER 238 (239)
Q Consensus 223 --------~~~lR~~~~~~~t~~~ 238 (239)
...+|+|++.++|.+|
T Consensus 344 ~~~~~~~~~~~iRvS~~~~nt~~d 367 (371)
T PF00266_consen 344 PSLDILGMGGVIRVSLHYYNTEED 367 (371)
T ss_dssp HHHHHHHTTTEEEEE-GTTSSHHH
T ss_pred HHHHHhCCCCEEEEeccCCCCHHH
Confidence 2799999999998765
No 18
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.90 E-value=1e-22 Score=172.05 Aligned_cols=154 Identities=13% Similarity=0.087 Sum_probs=120.2
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
.++|.+++++|++|+++||+||+++||++|++||||++|+.|.++++ +..+. +|++++|+||+ ++|+|+|+||
T Consensus 142 T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~-----~~~~~-vD~ls~SaHK~-~GpkGiGaLy 214 (386)
T COG1104 142 TILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPID-----LEELG-VDLLSFSAHKF-GGPKGIGALY 214 (386)
T ss_pred ceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceecc-----ccccC-cceEEeehhhc-cCCCceEEEE
Confidence 57899999999999999999999999999999999999999999998 44443 99999999997 7899999999
Q ss_pred eeCcccccccccCCCCccCCCCceecCCCCCCh------HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeE
Q 048438 85 ATNPEYLKNKATESKPVVDYKDWQITLSRSFRS------LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFE 157 (239)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~ 157 (239)
+++..-+.+... ....+.++|... +++..+++ +..+.++....+...|.++|.+.|.+. |++.
T Consensus 215 v~~~~~~~p~i~---------GGgQE~g~RsGTenv~~Ivg~~~A~~-~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~ 284 (386)
T COG1104 215 VRPGVRLEPLIH---------GGGQERGLRSGTENVPGIVGFGKAAE-IAVEELEEENARLRKLRDRLEDGLLEIIPDVY 284 (386)
T ss_pred ECCCCccCceec---------cCcCCCCCCCCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 965333333321 124455666443 33333443 345677778888889999999999975 8888
Q ss_pred EEcCC---CeeEEEEEEcCCC
Q 048438 158 VVFPC---HFAVVCFRVSPLP 175 (239)
Q Consensus 158 ~~~~~---~~~iv~f~~~~~~ 175 (239)
+.+.+ -.|+++|.+++..
T Consensus 285 ~~g~~~~rlP~~~~~~f~gv~ 305 (386)
T COG1104 285 LNGDDEPRLPNILNFSFPGVE 305 (386)
T ss_pred EcCCcccCCCCeEEEEeCCCc
Confidence 87653 3579999998753
No 19
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.90 E-value=3.1e-22 Score=173.33 Aligned_cols=205 Identities=14% Similarity=0.137 Sum_probs=144.6
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.|.+|++++.+|.+|.+.|+++|.++||++|++++||+||+.|..+++ +... ++|++++++|||+++|.|+|++
T Consensus 137 ~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K~l~~p~g~g~l 210 (376)
T TIGR01977 137 NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPID-----MTEL-AIDMLAFTGHKGLLGPQGTGGL 210 (376)
T ss_pred CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCC-----chhc-CCCEEEecccccccCCCCceEE
Confidence 467888999999999999999999999999999999999999988776 3322 4999999999999999999999
Q ss_pred EeeCcccccccccCCCC----ccCCC---CceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 84 WATNPEYLKNKATESKP----VVDYK---DWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~----~~~~~---~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
++++...+.+....... ..+.. ...++.+.. ...+++..+++.+...|++++.++..++++++.+.|.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~ 290 (376)
T TIGR01977 211 YIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREIN 290 (376)
T ss_pred EEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99765433322211100 01000 001122222 1225556677777777888888899999999999999889
Q ss_pred CeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE-----------
Q 048438 155 RFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV----------- 219 (239)
Q Consensus 155 g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----------- 219 (239)
+++++.+. ..++++|.+++.. ...+.+.|.++..+.+....
T Consensus 291 ~~~~~~~~~~~~~~~~v~~~~~~~~------------------------~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g 346 (376)
T TIGR01977 291 KVKIYGPADPANRVGVVSFTVEGID------------------------SEEVADILDEKFDIATRTGLHCAPLAHKTIG 346 (376)
T ss_pred CeEEeCCCCccccCCeEEEEECCCC------------------------HHHHHHHHhccCCEEEEcccccchHHHHHhC
Confidence 99998752 3679999986432 12566677666334343211
Q ss_pred ECCEeEEEEEecCCCCCcC
Q 048438 220 LGGIYAIRFATGATLTEER 238 (239)
Q Consensus 220 ~~g~~~lR~~~~~~~t~~~ 238 (239)
......+|++++.++|.+|
T Consensus 347 ~~~~~~iRis~~~~~t~~d 365 (376)
T TIGR01977 347 TFATGTIRLSLGYFNTEEE 365 (376)
T ss_pred CCCCCeEEEecCCCCCHHH
Confidence 1123589999988887654
No 20
>PLN02651 cysteine desulfurase
Probab=99.90 E-value=2.7e-22 Score=173.23 Aligned_cols=158 Identities=11% Similarity=0.032 Sum_probs=117.6
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
+.+|++++.+|.+|.++|+++|+++||++|+++|||++|+++.++++ ++.++ +|++++++||| ++|.|+|++|
T Consensus 139 t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~-----~~~~~-~D~~~~s~hK~-~gp~G~g~l~ 211 (364)
T PLN02651 139 TALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVD-----VDDLG-VDLMSISGHKI-YGPKGVGALY 211 (364)
T ss_pred cEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccC-----cccCC-CCEEEechhhh-CCCCceEEEE
Confidence 56888999999999999999999999999999999999999998887 55554 99999999998 7899999999
Q ss_pred eeCcccccccccC-CCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEc
Q 048438 85 ATNPEYLKNKATE-SKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DKRFEVVF 160 (239)
Q Consensus 85 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~g~~~~~ 160 (239)
++++ .+....+. .++.. ....+.|++ ...+++..+++.+.. +.+++.++..+|++++.+.|++ ++|++++.
T Consensus 212 v~~~-~~~~l~p~~~g~~~---~~~~~~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~ 286 (364)
T PLN02651 212 VRRR-PRVRLEPLMSGGGQ---ERGRRSGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNG 286 (364)
T ss_pred EcCC-CCCCCCccccCCCc---cCCccCCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEEC
Confidence 9753 22222110 00000 011223333 223555666766643 4577888999999999999985 68999998
Q ss_pred C--CC---eeEEEEEEcCC
Q 048438 161 P--CH---FAVVCFRVSPL 174 (239)
Q Consensus 161 ~--~~---~~iv~f~~~~~ 174 (239)
+ +. .++++|.+++.
T Consensus 287 ~~~~~~~~~~i~~~~~~~~ 305 (364)
T PLN02651 287 PRDPEKRYPGTLNLSFAYV 305 (364)
T ss_pred CCCcccCcCCEEEEEeCCC
Confidence 5 22 46999999753
No 21
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.90 E-value=3.1e-22 Score=175.28 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=136.0
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+.+|++++.++.+|.+.|+++|+++||++|++++||++|++|.++++ +..+ ++|++++++||||++|+| |++
T Consensus 171 ~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id-----~~~~-gvD~~~~s~hK~l~g~pG-~~l 243 (406)
T TIGR01814 171 DIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLD-----LHDW-GVDFACWCTYKYLNAGPG-AGA 243 (406)
T ss_pred CeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccc-----cccC-CCCEEEEcCccccCCCCC-eEE
Confidence 456899999999999999999999999999999999999999999887 4444 499999999999988878 667
Q ss_pred EeeCccc--ccccccCCCCc-----cC------CCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEY--LKNKATESKPV-----VD------YKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFER 148 (239)
Q Consensus 84 ~~~~~~~--l~~~~~~~~~~-----~~------~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~ 148 (239)
|+..... +.+....+... ++ ..+..++.|++ ...+++..+++.+...|++++.++..+|++++++
T Consensus 244 ~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~ 323 (406)
T TIGR01814 244 FVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEE 323 (406)
T ss_pred EEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 7644322 11111110000 00 00111122222 1224455567666556778888889999999999
Q ss_pred HHhCC----CCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE
Q 048438 149 LVSGD----KRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL 220 (239)
Q Consensus 149 ~l~~~----~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~ 220 (239)
.|++. ++++++.+. ..++++|.++ .. ...+.+.|.++|.+ +. .
T Consensus 324 ~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~------------------------~~~~~~~L~~~gi~-v~---~ 374 (406)
T TIGR01814 324 LIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VP------------------------GKAVFQALIKRGVI-GD---K 374 (406)
T ss_pred HHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CC------------------------HHHHHHHHHHCCEE-Ee---c
Confidence 99875 469988753 3578999886 21 11556667666653 33 2
Q ss_pred CCEeEEEEEec-CCCCCcC
Q 048438 221 GGIYAIRFATG-ATLTEER 238 (239)
Q Consensus 221 ~g~~~lR~~~~-~~~t~~~ 238 (239)
.+...+|+|++ .++|.+|
T Consensus 375 ~~~~~iRiS~~~~~nt~~d 393 (406)
T TIGR01814 375 REPSVIRVAPVPLYNTFVD 393 (406)
T ss_pred cCCCeEEEechhccCCHHH
Confidence 33458999984 6766653
No 22
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.89 E-value=9.8e-22 Score=171.79 Aligned_cols=203 Identities=14% Similarity=0.146 Sum_probs=143.7
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|++++.+|.+|.+.|+++|+++|+++|++++||++|+.+..+.+ +..+ ++|++++++|| +++|.|+|++
T Consensus 160 ~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K-~~gp~G~G~l 232 (401)
T PRK10874 160 RTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPAD-----VQAL-DIDFYAFSGHK-LYGPTGIGVL 232 (401)
T ss_pred CcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCC-----chhc-CCCEEEEeccc-ccCCCccEEE
Confidence 356888999999999999999999999999999999999998877665 3334 39999999999 5679999999
Q ss_pred EeeCcccccccccC--CCCc---cCC-------CCceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKATE--SKPV---VDY-------KDWQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 84 ~~~~~~~l~~~~~~--~~~~---~~~-------~~~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
++++ +.+...... .+.. .++ ..+.++.|+.- ..+++..+++.+...+++++.++..++++++.+.
T Consensus 233 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~ 311 (401)
T PRK10874 233 YGKS-ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDA 311 (401)
T ss_pred EEch-HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9853 333322110 0000 000 11223333331 3455666676665566777778888999999999
Q ss_pred HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--------C
Q 048438 150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--------G 221 (239)
Q Consensus 150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--------~ 221 (239)
|++++|++++.++..++++|.+++.. ...+.+.|.++|..+.+.... .
T Consensus 312 l~~~~g~~~~~~~~~~i~~~~~~~~~------------------------~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g 367 (401)
T PRK10874 312 LAKLPGFRSFRCQDSSLLAFDFAGVH------------------------HSDLVTLLAEYGIALRAGQHCAQPLLAALG 367 (401)
T ss_pred HhcCCCEEEeCCCCCcEEEEEECCcC------------------------HHHHHHHHHHCCcEEeccccchHHHHHHhC
Confidence 99999999887778889999876421 124556676677665543321 1
Q ss_pred CEeEEEEEecCCCCCcC
Q 048438 222 GIYAIRFATGATLTEER 238 (239)
Q Consensus 222 g~~~lR~~~~~~~t~~~ 238 (239)
...++|+|++.++|.+|
T Consensus 368 ~~~~iRiS~~~~nt~ed 384 (401)
T PRK10874 368 VTGTLRASFAPYNTQSD 384 (401)
T ss_pred CCCEEEEEecccCCHHH
Confidence 23689999999987764
No 23
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.88 E-value=1.2e-21 Score=171.50 Aligned_cols=203 Identities=15% Similarity=0.147 Sum_probs=140.8
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|++++.+|.+|.+.|+++|+++||++|++++||++|+.+..+++ +..+ ++|++++++|| +++|.|+|++
T Consensus 164 ~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K-~~gp~G~G~l 236 (406)
T PRK09295 164 RTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVD-----VQAL-DCDFYVFSGHK-LYGPTGIGIL 236 (406)
T ss_pred CcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccC-----chhc-CCCEEEeehhh-ccCCCCcEEE
Confidence 467888999999999999999999999999999999999999988776 4333 49999999999 5679999999
Q ss_pred EeeCcccccccccC--CCCc---cC--------CCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKATE--SKPV---VD--------YKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFER 148 (239)
Q Consensus 84 ~~~~~~~l~~~~~~--~~~~---~~--------~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~ 148 (239)
++++ +.+...... +... .+ .....++.|++ ...+++..+++.+...|++++.++..++++++.+
T Consensus 237 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~ 315 (406)
T PRK09295 237 YVKE-ALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALS 315 (406)
T ss_pred EEch-HhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 9864 332221110 0000 00 00122333333 2335666677766555777788888899999999
Q ss_pred HHhCCCCeEEEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE--------
Q 048438 149 LVSGDKRFEVVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV-------- 219 (239)
Q Consensus 149 ~l~~~~g~~~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-------- 219 (239)
.|+++++++++.+. ..+|++|.+++... ..+.+.|.+.|....+...
T Consensus 316 ~l~~~~~~~~~~~~~~~~iv~~~~~~~~~------------------------~~~~~~L~~~gI~v~~g~~c~~~~~~~ 371 (406)
T PRK09295 316 QLESVPDLTLYGPQNRLGVIAFNLGKHHA------------------------YDVGSFLDNYGIAVRTGHHCAMPLMAY 371 (406)
T ss_pred HHhcCCCEEEeCCCCCceEEEEEECCcCH------------------------HHHHHHHHhCCeEEeccccchHHHHHH
Confidence 99999999998763 47899999875321 1344456555544322110
Q ss_pred ECCEeEEEEEecCCCCCcC
Q 048438 220 LGGIYAIRFATGATLTEER 238 (239)
Q Consensus 220 ~~g~~~lR~~~~~~~t~~~ 238 (239)
.....++|+|++-++|.+|
T Consensus 372 ~~~~~~iRiS~~~ynt~~d 390 (406)
T PRK09295 372 YNVPAMCRASLAMYNTHEE 390 (406)
T ss_pred HCCCCEEEEEccCCCCHHH
Confidence 1112479999998888764
No 24
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.88 E-value=3e-21 Score=168.57 Aligned_cols=203 Identities=15% Similarity=0.118 Sum_probs=141.3
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|++++.++.+|.+.|+++|+++||++|++++||++|+.+..+.+ +..+ ++|++++++|| +++|.|+|++
T Consensus 157 ~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~-----~~~~-~~d~~~~s~~K-~~gp~G~G~l 229 (398)
T TIGR03392 157 RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPD-----VQAL-DIDFYAFSGHK-LYGPTGIGVL 229 (398)
T ss_pred CceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCC-----hhhc-CCCEEEEeccc-ccCCCceEEE
Confidence 356788899999999999999999999999999999999988877654 3333 39999999999 5679999999
Q ss_pred EeeCcccccccccC--CCCc---cCC-------CCceecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKATE--SKPV---VDY-------KDWQITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 84 ~~~~~~~l~~~~~~--~~~~---~~~-------~~~~~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
++++ +.+...... .... .+. ..+.++.|+. + ..+++..+++.+...+++++.++..++++++.+.
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~ 308 (398)
T TIGR03392 230 YGKT-ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEER 308 (398)
T ss_pred EEcH-HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9753 333222110 0000 000 1122333333 1 3356666777665557777788888999999999
Q ss_pred HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--------C
Q 048438 150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--------G 221 (239)
Q Consensus 150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--------~ 221 (239)
|++++|++++.++..++++|.+++.. ...+.+.|.++|....+.... .
T Consensus 309 l~~l~g~~~~~~~~~~i~~~~~~~~~------------------------~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g 364 (398)
T TIGR03392 309 LAQLPGFRSFRCPGSSLLAFDFAGVH------------------------HSDLAALLAESGIALRAGQHCAQPLMAALG 364 (398)
T ss_pred HhcCCCeEEeCCCCCcEEEEEeCCcC------------------------HHHHHHHHHhCCEEEecCccchHHHHHHhC
Confidence 99999999887777889999976421 124556676665544332211 1
Q ss_pred CEeEEEEEecCCCCCcC
Q 048438 222 GIYAIRFATGATLTEER 238 (239)
Q Consensus 222 g~~~lR~~~~~~~t~~~ 238 (239)
...++|+|++.++|.+|
T Consensus 365 ~~~~iRvS~~~~~t~~e 381 (398)
T TIGR03392 365 VSGTLRASFAPYNTQQD 381 (398)
T ss_pred CCCEEEEEeeccCCHHH
Confidence 13589999999888764
No 25
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.87 E-value=9e-21 Score=166.90 Aligned_cols=203 Identities=14% Similarity=0.127 Sum_probs=140.3
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|++++.+|.+|.+.|+++|+++||++|++++||++|+.+..+++ +..+ ++|++++++|| +++|.|+|++
T Consensus 173 ~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K-~~gp~G~G~l 245 (424)
T PLN02855 173 KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVD-----VQTL-GADFLVASSHK-MCGPTGIGFL 245 (424)
T ss_pred CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCC-----chhc-CCCEEEeeccc-ccCCCccEEE
Confidence 456888999999999999999999999999999999999998877765 3443 38999999999 5779999999
Q ss_pred EeeCcccccccccC--CCC-----ccCCC-----CceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKATE--SKP-----VVDYK-----DWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 84 ~~~~~~~l~~~~~~--~~~-----~~~~~-----~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
++++ +.+....+. .+. ..+.. ...++.|++ ...+.+..+++.+...|++++.++..++++++++.
T Consensus 246 ~~~~-~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~ 324 (424)
T PLN02855 246 WGKS-DLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEK 324 (424)
T ss_pred EEch-hhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9864 343322110 000 00000 011222222 12345556677665567888888899999999999
Q ss_pred HhCCCCeEEEcCC------CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE---
Q 048438 150 VSGDKRFEVVFPC------HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--- 220 (239)
Q Consensus 150 l~~~~g~~~~~~~------~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--- 220 (239)
|++++|++++.+. ..++++|.+++.. ...+.+.|.++..+.+.....
T Consensus 325 L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~------------------------~~~v~~~L~~~~gI~v~~g~~c~~ 380 (424)
T PLN02855 325 LSSVPGVRIYGPKPSEGVGRAALCAFNVEGIH------------------------PTDLSTFLDQQHGVAIRSGHHCAQ 380 (424)
T ss_pred HhcCCCEEEeCCCcccccCcccEEEEEECCcC------------------------HHHHHHHhcccCCEEEechhhhhH
Confidence 9999999999752 3589999986532 114566666663343332110
Q ss_pred -----CC-EeEEEEEecCCCCCcC
Q 048438 221 -----GG-IYAIRFATGATLTEER 238 (239)
Q Consensus 221 -----~g-~~~lR~~~~~~~t~~~ 238 (239)
.| ..++|+|++-++|.+|
T Consensus 381 ~~~~~~g~~~~iRiS~~~ynt~~d 404 (424)
T PLN02855 381 PLHRYLGVNASARASLYFYNTKEE 404 (424)
T ss_pred HHHHHhCCCCeEEEEeccCCCHHH
Confidence 11 2579999999888764
No 26
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.87 E-value=9.1e-21 Score=165.73 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=138.2
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.|.+|+.++.+|.+|.+.|+++|+++||++|+++|||+||+.+..+.+ +..+ ++|++++++||++ +|.|+|++
T Consensus 159 ~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~~-gp~G~g~l 231 (403)
T TIGR01979 159 KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVD-----VQAL-DCDFYVFSGHKMY-GPTGIGVL 231 (403)
T ss_pred CCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccC-----cccc-CCCEEEEeccccc-CCCCceEE
Confidence 467888999999999999999999999999999999999999887665 3333 4999999999975 69999999
Q ss_pred EeeCcccccccccC--CCCccC--------C--CCceecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKATE--SKPVVD--------Y--KDWQITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 84 ~~~~~~~l~~~~~~--~~~~~~--------~--~~~~~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
++++ +.+...... .+...+ + ..+.++.+++ . ..++++.+++.+...|++++.++..++++++.+.
T Consensus 232 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~ 310 (403)
T TIGR01979 232 YGKE-ELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALER 310 (403)
T ss_pred EEch-HHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9864 332221110 000000 0 0111222222 1 2355566666665556778888899999999999
Q ss_pred HhCCCCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-------
Q 048438 150 VSGDKRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV------- 218 (239)
Q Consensus 150 l~~~~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~------- 218 (239)
|+++++++++.++ ..++++|.+++.. ...+.+.|.++|....+..
T Consensus 311 l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~------------------------~~~~~~~L~~~gI~v~~g~~~~~~~~ 366 (403)
T TIGR01979 311 LGEIPGLRIYGPRDAEDRGGIISFNVEGVH------------------------PHDVGTILDEEGIAVRSGHHCAQPLM 366 (403)
T ss_pred HhcCCCEEEeCCCCccccCceEEEEeCCcC------------------------HHHHHHHHhhCCEEEcchhhhhHHHH
Confidence 9998899998754 3789999986521 1144556666654432211
Q ss_pred -EECCEeEEEEEecCCCCCcC
Q 048438 219 -VLGGIYAIRFATGATLTEER 238 (239)
Q Consensus 219 -~~~g~~~lR~~~~~~~t~~~ 238 (239)
......++|+|++.++|.+|
T Consensus 367 ~~~~~~~~iRiS~~~~~t~~d 387 (403)
T TIGR01979 367 RRFGVPATCRASFYIYNTEED 387 (403)
T ss_pred HHhCCCCEEEEEeccCCCHHH
Confidence 01113579999998877654
No 27
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.87 E-value=1.7e-21 Score=168.96 Aligned_cols=200 Identities=8% Similarity=-0.064 Sum_probs=135.5
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEee
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWAT 86 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~ 86 (239)
.|++++.+|.+|.+.|+++|++ |++|++++|||+|+.|..+++ ++. +|++++++||||++|.|+|++|++
T Consensus 139 ~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pid-----v~~---iD~~~~s~~K~l~~P~G~g~l~v~ 208 (378)
T PRK03080 139 DVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLD-----WSK---LDVYTFSWQKVLGGEGGHGMAILS 208 (378)
T ss_pred CEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCC-----HHH---CcEEEEehhhhCCCCCceEEEEEC
Confidence 4789999999999999999999 889999999999999999998 443 899999999999999999999996
Q ss_pred Cccccccccc---CC--CCccCCCC------ceecCCCCC--Ch---HHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHH
Q 048438 87 NPEYLKNKAT---ES--KPVVDYKD------WQITLSRSF--RS---LKLWFVIRNYGME-NLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 87 ~~~~l~~~~~---~~--~~~~~~~~------~~~~~~~~~--~~---~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~ 149 (239)
+ +.+....+ .+ ..++++.. ...+.++.. .. ..+..+++.+-.. |++++.+++.++++++++.
T Consensus 209 ~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~ 287 (378)
T PRK03080 209 P-RAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDW 287 (378)
T ss_pred H-HHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4 33322111 10 11222111 011222221 11 2334567777666 7899999999999999999
Q ss_pred HhCCCCeEEEcC-C--Ce-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeE
Q 048438 150 VSGDKRFEVVFP-C--HF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYA 225 (239)
Q Consensus 150 l~~~~g~~~~~~-~--~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~ 225 (239)
|+++++++++.+ + .+ .+++|++++.. ......+..+|.+++.+............
T Consensus 288 l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~---------------------~~~~~~~~~~l~~~~i~v~~g~~~~~~~~ 346 (378)
T PRK03080 288 AEKTPWATPLVADPATRSNTSVTLDFVDAQ---------------------AAVDAAAVAKLLRENGAVDIEPYRDAPNG 346 (378)
T ss_pred HHhCCCcccccCCccccCccEEEEEcCCch---------------------HHHHHHHHHHHHHcCCeeccccccCCCCc
Confidence 999877787742 2 23 58999876510 01112344455555544332111112368
Q ss_pred EEEEecCCCCCcC
Q 048438 226 IRFATGATLTEER 238 (239)
Q Consensus 226 lR~~~~~~~t~~~ 238 (239)
+|++++.++|.+|
T Consensus 347 vRis~~~~~t~~d 359 (378)
T PRK03080 347 LRIWCGPTVEPAD 359 (378)
T ss_pred EEEecCCCCCHHH
Confidence 9999998888654
No 28
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.86 E-value=2.2e-20 Score=162.08 Aligned_cols=198 Identities=14% Similarity=0.066 Sum_probs=135.5
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+.+|++++.+|.+|.+.|+++|+++||++|+++|||++|+.+..+++ +..+ ++|++++++|| +++|.|+|++
T Consensus 136 ~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~-----~~~~-~~D~~~~s~~K-~~gp~G~g~l 208 (379)
T TIGR03402 136 DTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPID-----LKEM-NIDMLSLSGHK-LHGPKGVGAL 208 (379)
T ss_pred CcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccC-----cccC-CCCEEEEcHHH-cCCCCceEEE
Confidence 356888899999999999999999999999999999999999988776 4444 49999999999 6889999999
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEc
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DKRFEVVF 160 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~g~~~~~ 160 (239)
|+++...+.+... +.. .....+.++. ...+.+..+++.+ .+.++++.++..++.+++.+.|++ ++++++..
T Consensus 209 ~v~~~~~~~p~~~--g~~---~~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 282 (379)
T TIGR03402 209 YIRKGTRFRPLLR--GGH---QERGRRAGTENVPGIVGLGKAAELA-TEHLEEENTRVRALRDRLEAGLLARIPDARLNG 282 (379)
T ss_pred EECCCCCCCCccc--CCc---cCCCcCCCCccHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeC
Confidence 9975432221110 000 0011112222 1123344445543 345677778888999999999985 89999887
Q ss_pred CCC---eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE-E----------------
Q 048438 161 PCH---FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV-L---------------- 220 (239)
Q Consensus 161 ~~~---~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~---------------- 220 (239)
++. .++++|.++.... ..+.+.|.++|...-+... .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~ 338 (379)
T TIGR03402 283 DPTKRLPNTVNISFEYIEG------------------------EAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVP 338 (379)
T ss_pred CCccCCCCEEEEEecCCCH------------------------HHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCC
Confidence 542 4689888865321 1455566555544332210 0
Q ss_pred --CCEeEEEEEecCCCCCcC
Q 048438 221 --GGIYAIRFATGATLTEER 238 (239)
Q Consensus 221 --~g~~~lR~~~~~~~t~~~ 238 (239)
.....+|+|++.++|++|
T Consensus 339 ~~~~~~~vR~S~~~~~t~~d 358 (379)
T TIGR03402 339 HTAAHGSIRFSLSRYNTEED 358 (379)
T ss_pred hhhcCceEEEEcCCCCCHHH
Confidence 013589999999988765
No 29
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.85 E-value=2e-20 Score=163.55 Aligned_cols=203 Identities=13% Similarity=0.062 Sum_probs=138.9
Q ss_pred ccEEEEEecCCCCcccccChhHHHHH--HHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDV--AKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i--~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
.+-+|++++.+|.||.+.|+++|+++ ||++|++++||++|+.+.++++ +..+ ++|++++++|||+++|.|+|
T Consensus 137 ~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id-----~~~~-~~D~~~~s~~K~l~~P~G~G 210 (401)
T PLN02409 137 KIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFR-----MDEW-GVDVALTGSQKALSLPTGLG 210 (401)
T ss_pred CccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccc-----cccc-CccEEEEcCccccCcCCCcc
Confidence 46788899999999999999999999 9999999999999999888776 4444 39999999999999999999
Q ss_pred EEEeeCcccccccccC--CCCccCCC---CceecCCC-CC-----ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 048438 82 CLWATNPEYLKNKATE--SKPVVDYK---DWQITLSR-SF-----RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLV 150 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~--~~~~~~~~---~~~~~~~~-~~-----~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l 150 (239)
++++++ +.+...... ...++++. .+...+.+ .+ ..+++..+++.+...|++++.++..++++++++.|
T Consensus 211 ~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L 289 (401)
T PLN02409 211 IVCASP-KALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAV 289 (401)
T ss_pred eeEECH-HHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999853 333222110 01111110 00001111 11 12344456676667788999999999999999999
Q ss_pred hCCCCeEEEcCC---Ce-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-CEeE
Q 048438 151 SGDKRFEVVFPC---HF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-GIYA 225 (239)
Q Consensus 151 ~~~~g~~~~~~~---~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-g~~~ 225 (239)
++. |++++.+. .+ .+++|.++.. . + ...+.+.|.++..+.+...... +..+
T Consensus 290 ~~~-g~~~~~~~~~~~s~~v~~~~~p~~-~---------------~-------~~~l~~~l~~~~~i~i~~G~~~~~~~~ 345 (401)
T PLN02409 290 EAW-GLKLCTKKPEWRSDTVTAVVVPEG-I---------------D-------SAEIVKNAWKKYNLSLGLGLNKVAGKV 345 (401)
T ss_pred HHc-CCeeccCChhhcccceEEEeCCCC-C---------------C-------HHHHHHHHHHhCCEEEEcCCCcccCCE
Confidence 886 89988752 24 4666877532 1 0 1145555555545545433322 4568
Q ss_pred EEEEecCCCCCc
Q 048438 226 IRFATGATLTEE 237 (239)
Q Consensus 226 lR~~~~~~~t~~ 237 (239)
+|++.+.++|.+
T Consensus 346 ~Rig~~g~~~~~ 357 (401)
T PLN02409 346 FRIGHLGNVNEL 357 (401)
T ss_pred EEEcCCCCCCHH
Confidence 999999988654
No 30
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.85 E-value=8.2e-20 Score=158.09 Aligned_cols=203 Identities=16% Similarity=0.185 Sum_probs=140.3
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|++++.+|.+|.++|+++|.++|+++|+++|+|+||+.+..+.+ ...+ ++|++++++|||+++ .|+|++
T Consensus 139 ~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~~~-~g~g~~ 211 (373)
T cd06453 139 RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVD-----VQDL-GCDFLAFSGHKMLGP-TGIGVL 211 (373)
T ss_pred CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeee-----cccc-CCCEEEeccccccCC-CCcEEE
Confidence 356788899999999999999999999999999999999998877654 2233 499999999999876 789988
Q ss_pred EeeCcccccccccC--CCCcc-----CCCCc-----eecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKATE--SKPVV-----DYKDW-----QITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 84 ~~~~~~~l~~~~~~--~~~~~-----~~~~~-----~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
++++ ..+...... ..... +...+ .+..+.+ ...++++.+++.+..++++++.++..++++++.+.
T Consensus 212 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~ 290 (373)
T cd06453 212 YGKE-ELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALER 290 (373)
T ss_pred EEch-HHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 8854 332222110 00000 00011 1111222 13466777788777778888888899999999999
Q ss_pred HhCCCCeEEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE--------
Q 048438 150 VSGDKRFEVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV-------- 219 (239)
Q Consensus 150 l~~~~g~~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-------- 219 (239)
|+++++++++.++ ..++++|.++... ..++.+.|.++|..+.....
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~i~~~l~~~gi~i~~g~~~~~~~~~~ 346 (373)
T cd06453 291 LSEIPGVRVYGDAEDRAGVVSFNLEGIH------------------------PHDVATILDQYGIAVRAGHHCAQPLMRR 346 (373)
T ss_pred HhcCCCeEEeCCccccCCeEEEEECCcC------------------------HHHHHHHHHHCCEEeccCccchhHHHHH
Confidence 9999899988543 4678889875421 12566677666655432211
Q ss_pred ECCEeEEEEEecCCCCCcC
Q 048438 220 LGGIYAIRFATGATLTEER 238 (239)
Q Consensus 220 ~~g~~~lR~~~~~~~t~~~ 238 (239)
......+|++++.++|++|
T Consensus 347 ~~~~~~iRis~~~~~t~~d 365 (373)
T cd06453 347 LGVPGTVRASFGLYNTEEE 365 (373)
T ss_pred hCCCCeEEEEecCCCCHHH
Confidence 1124589999998877654
No 31
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.84 E-value=1.4e-19 Score=157.17 Aligned_cols=156 Identities=14% Similarity=0.074 Sum_probs=112.2
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
+-+|++++.+|.+|.+.|+++|.++|+++|+++|||++|+.+..+++ +..+ ++|++++++||| ++|.|+|+++
T Consensus 141 t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K~-~gp~G~g~l~ 213 (382)
T TIGR03403 141 TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVD-----VQKA-GVDFLSFSAHKF-HGPKGVGGLY 213 (382)
T ss_pred CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccC-----cccc-CCCEEEEcchhh-CCCCceEEEE
Confidence 46788899999999999999999999999999999999998887765 3333 499999999998 6799999999
Q ss_pred eeCcccccccccCCCCccCCCCceecCCCC-CCh-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 85 ATNPEYLKNKATESKPVVDYKDWQITLSRS-FRS-LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
+++...+.+.... .... . ....+.. ..+ +.+..+++.+ .+.+++..++..++++++.+.|+++++++++.+.
T Consensus 214 vr~~~~~~p~~~g-~~~~--~--~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~ 287 (382)
T TIGR03403 214 IRKGVELTPLFHG-GEHM--G--GRRSGTLNVPYIVAMGEAMRLA-NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDR 287 (382)
T ss_pred ECCCCCCCCcccC-CCCC--C--CcccCCcChHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 9764322221100 0000 0 0111211 112 3444555543 3356777788899999999999999999998753
Q ss_pred --C-eeEEEEEEcC
Q 048438 163 --H-FAVVCFRVSP 173 (239)
Q Consensus 163 --~-~~iv~f~~~~ 173 (239)
. .++++|.+++
T Consensus 288 ~~~~~~~~~~~~~~ 301 (382)
T TIGR03403 288 EHRVPNTILISIKG 301 (382)
T ss_pred CCCcCCEEEEEeCC
Confidence 2 4688898865
No 32
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.84 E-value=3.5e-20 Score=174.12 Aligned_cols=164 Identities=13% Similarity=0.005 Sum_probs=118.7
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHh--------CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--------GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA 76 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--------gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~ 76 (239)
+-+|++++.+|.+|.+.|+++|..+++.. +++++|||||+++.++++ +..+. +|++++|+|||+++
T Consensus 193 t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piD-----v~~~~-~Dfl~~S~HK~~Gg 266 (805)
T PLN02724 193 YNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPD-----LSRYP-ADFVVVSFYKIFGY 266 (805)
T ss_pred cceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCC-----hhhcC-CCEEEEecceeccC
Confidence 35999999999999999999876655532 357999999999999988 55554 99999999999999
Q ss_pred cccceEEEeeCcc--cccccccCCCCc---c---CC------CCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHH
Q 048438 77 TLDCCCLWATNPE--YLKNKATESKPV---V---DY------KDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHV 140 (239)
Q Consensus 77 P~g~g~l~~~~~~--~l~~~~~~~~~~---~---~~------~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~ 140 (239)
|.|+|+||+++.. .+.+.....+.. . ++ .+..++.|+. ...+++..+++.+...|++++.++..
T Consensus 267 P~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~ 346 (805)
T PLN02724 267 PTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTW 346 (805)
T ss_pred CCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 9999999997531 122221111100 0 00 1123444444 23356666777665556778888888
Q ss_pred HHHHHHHHHHhCCC------CeEEEcCC--------CeeEEEEEEcCC
Q 048438 141 NMARLFERLVSGDK------RFEVVFPC--------HFAVVCFRVSPL 174 (239)
Q Consensus 141 ~la~~l~~~l~~~~------g~~~~~~~--------~~~iv~f~~~~~ 174 (239)
+|++++.+.|++++ +++++++. +.+||+|.+.+.
T Consensus 347 ~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~ 394 (805)
T PLN02724 347 ALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRA 394 (805)
T ss_pred HHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcC
Confidence 99999999999886 58888643 468999999874
No 33
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.84 E-value=1.7e-19 Score=157.42 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=133.6
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
+-+|++++.+|.+|.+.|+++|+++||++|++++||+||+.+..+.+ +..+ ++|++++++|||++ |. +|+++
T Consensus 157 ~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~-----~~~~-~~d~~~~s~~K~~g-~~-~G~l~ 228 (397)
T TIGR01976 157 TRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLID-----VQAT-GADFLTCSAYKFFG-PH-MGILW 228 (397)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCC-----HHHc-CCCEEEEechhhcC-Cc-eEEEE
Confidence 56888999999999999999999999999999999999987766554 3333 49999999999974 54 78888
Q ss_pred eeCcccccccccCC-CCccCCCCceecCCCC-C-ChHHHHHHHHHhCHH--------------HHHHHHHHHHHHHHHHH
Q 048438 85 ATNPEYLKNKATES-KPVVDYKDWQITLSRS-F-RSLKLWFVIRNYGME--------------NLRHFLRSHVNMARLFE 147 (239)
Q Consensus 85 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~g~~--------------g~~~~~~~~~~la~~l~ 147 (239)
+++ +.+....... ..........++.|++ + ..+.+..+++.+... .+++..++..++++++.
T Consensus 229 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 307 (397)
T TIGR01976 229 GRP-ELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLL 307 (397)
T ss_pred EcH-HHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 854 3332221110 0011111112233333 2 224444555444222 25677788889999999
Q ss_pred HHHhCCCCeEEEcC----CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE----
Q 048438 148 RLVSGDKRFEVVFP----CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---- 219 (239)
Q Consensus 148 ~~l~~~~g~~~~~~----~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---- 219 (239)
+.|+++++++++.+ ..++++.|.+++.. ...+.++|.++|........
T Consensus 308 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~l~~~L~~~gI~v~~~~~~~~~ 363 (397)
T TIGR01976 308 VGLSDLPGVTLYGVARLAARVPTVSFTVHGLP------------------------PQRVVRRLADQGIDAWAGHFYAVR 363 (397)
T ss_pred HHHhcCCCEEEeCCCCccCCCceEEEEeCCcC------------------------HHHHHHHHHHCCeEEEeCccchHH
Confidence 99999878999865 25789998876421 12566677666655432211
Q ss_pred -------ECCEeEEEEEecCCCCCcC
Q 048438 220 -------LGGIYAIRFATGATLTEER 238 (239)
Q Consensus 220 -------~~g~~~lR~~~~~~~t~~~ 238 (239)
..+..++|++++.++|++|
T Consensus 364 ~~~~~~~~~~~~~iRis~~~~~t~~d 389 (397)
T TIGR01976 364 LLRRLGLNDEGGVVRVGLAHYNTAEE 389 (397)
T ss_pred HHHHhCCCCCCCeEEEEeeccCCHHH
Confidence 1134689999999988764
No 34
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.83 E-value=1.1e-19 Score=156.90 Aligned_cols=203 Identities=11% Similarity=0.051 Sum_probs=135.6
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA 85 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~ 85 (239)
.+|++++.+|.+|.+.|+++|+++||++|++++||++|+.|..+++ +..+ ++|++++++|||+++|.|+|++++
T Consensus 131 ~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~-----~~~~-~~D~~~~s~~K~l~~p~G~G~l~~ 204 (363)
T TIGR02326 131 THIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPID-----IAEL-HIDYLISSANKCIQGVPGFGFVIA 204 (363)
T ss_pred cEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccc-----hhhc-CccEEEecCccccccCCcceEEEE
Confidence 4677888999999999999999999999999999999998887766 4444 399999999999999999999998
Q ss_pred eCccccccccc-CCCCccCCC-C---ce-ecCCCCCC-----hHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCC
Q 048438 86 TNPEYLKNKAT-ESKPVVDYK-D---WQ-ITLSRSFR-----SLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 86 ~~~~~l~~~~~-~~~~~~~~~-~---~~-~~~~~~~~-----~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
+.. .+..... ..+...+.. . .. ..+.++|. .+++..+++.+..+ +++++.++..++++++++.|++.
T Consensus 205 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~ 283 (363)
T TIGR02326 205 RQA-ELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL 283 (363)
T ss_pred CHH-HHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 543 2222110 000111100 0 00 01112222 24445556665444 47788889999999999999887
Q ss_pred CCeEEEcCC--CeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEe
Q 048438 154 KRFEVVFPC--HFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230 (239)
Q Consensus 154 ~g~~~~~~~--~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~ 230 (239)
|++++.++ ++++ ++|++++... .....+.+.|.++|..+.+.... +...+|+++
T Consensus 284 -g~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~v~~~L~~~gi~v~~g~~~-~~~~iRi~~ 340 (363)
T TIGR02326 284 -GFEPLLDDEIQSPIITSFYSPEDPD---------------------YRFADFYQRLKEQGFVIYPGKVS-QVDCFRIGN 340 (363)
T ss_pred -CCeeccCcccCCceEEEEECCCCCC---------------------CCHHHHHHHHHHCCEEEECCcCC-CCCEEEEec
Confidence 88887653 4554 5677764210 00125666777676654433222 346899998
Q ss_pred cCCCCCcC
Q 048438 231 GATLTEER 238 (239)
Q Consensus 231 ~~~~t~~~ 238 (239)
+..+|.+|
T Consensus 341 ~~~~~~ed 348 (363)
T TIGR02326 341 IGEVDAAD 348 (363)
T ss_pred CCCCCHHH
Confidence 88776553
No 35
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=99.83 E-value=4.1e-19 Score=150.90 Aligned_cols=203 Identities=20% Similarity=0.204 Sum_probs=156.2
Q ss_pred CccEEEEEecCCCCcccccChhHHHHHHHH-hCCEEEEecccccccccCccc-c-cccCCCCCcceEEEcCcccCCCccc
Q 048438 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQ-FGIWVHVDAAYAGSACIFPEF-R-HFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~-~gi~lhvD~A~~~~~~~~~~~-~-~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
...+.|+++++++.+|.++|+++|.++.-+ +++.+|||+|-|++.++.-.+ . .+..+..++-|++.+.||..++|.|
T Consensus 217 eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G 296 (491)
T KOG1383|consen 217 ENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAG 296 (491)
T ss_pred cceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeecC
Confidence 356889999999999999999999999999 999999999999988762111 1 2234456799999999999999999
Q ss_pred ceEEEeeCccccccccc---CCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 80 CCCLWATNPEYLKNKAT---ESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
.+.++.++.+++..... ++.+ -.+...++.+||. +..++.|+++-.+|.+|+.+..+++.+.++++++.|+++++
T Consensus 297 ~~~vl~r~k~~~~~q~~~~~~w~G-g~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~ 375 (491)
T KOG1383|consen 297 SSWVLYRNKELLPHQLFFHTDWLG-GIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKG 375 (491)
T ss_pred cEEEEEcccccccceEEEeccccC-ccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999987766544321 1111 1123457777887 56688999999999999999999999999999999999999
Q ss_pred eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC--EeEEEEEe
Q 048438 156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG--IYAIRFAT 230 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g--~~~lR~~~ 230 (239)
+.++++|...++.|.-... +.+ ++.+.|...|+.+-..+...+ ..++|+.+
T Consensus 376 i~i~gkp~vs~~~~~s~~~----------------------~i~--elsd~l~~~GW~lnalq~P~a~Hi~vt~~~~ 428 (491)
T KOG1383|consen 376 IKIVGKPLVSFILFGSNDV----------------------NIF--ELSDLLRKKGWILNALQFPAAIHICVTRVHA 428 (491)
T ss_pred ceecCCCcEEEEEccCCcc----------------------chh--hhhHHHHhcCcCccccCCCCceEEEEEeeec
Confidence 9999987655554443221 222 777888889998887776653 34556553
No 36
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.82 E-value=2.5e-19 Score=156.76 Aligned_cols=146 Identities=10% Similarity=0.098 Sum_probs=105.8
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
+.+|++++.+|.+|.+.|+++|+++||++|+++|||++|+.+..+++ +.++ ++|++++++||+ ++|.|+|+++
T Consensus 143 ~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~-----~~~~-~~D~~~~s~~K~-~gp~G~G~l~ 215 (402)
T TIGR02006 143 TILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPIN-----VNEL-KVDLMSISGHKI-YGPKGIGALY 215 (402)
T ss_pred CEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccC-----cccc-CCCEEEEehhhh-cCCCceEEEE
Confidence 56888999999999999999999999999999999999999988776 4444 499999999996 5699999999
Q ss_pred eeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 85 ATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
+++...........++. ....++.++. ...+++..+++.+. ++++++.++..++++++.+.|+++++++++.+
T Consensus 216 ~~~~~~~~~~~~~~g~~---~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~ 290 (402)
T TIGR02006 216 VRRKPRVRLEALIHGGG---HERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGD 290 (402)
T ss_pred EccCCCCCCCceecCCC---ccCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 97532221110000000 0011222222 12234445555543 46778888999999999999999889988764
No 37
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.82 E-value=2.1e-19 Score=152.96 Aligned_cols=198 Identities=15% Similarity=0.081 Sum_probs=139.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
.-+|.++|+.|+||.++|+++|+++||+||..++||+.-+.|..+++ ++.| ++|.+..+++|+|++|+|.|++.
T Consensus 132 ~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~-----vd~w-giDv~itgSQK~l~~PPGla~v~ 205 (383)
T COG0075 132 IKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLK-----VDEW-GIDVAITGSQKALGAPPGLAFVA 205 (383)
T ss_pred ccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccc-----hhhc-CccEEEecCchhccCCCccceeE
Confidence 34899999999999999999999999999999999998888877776 5556 49999999999999999999999
Q ss_pred eeCccc--ccccccCCCCccCCCCceec----CCCCCC-----hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438 85 ATNPEY--LKNKATESKPVVDYKDWQIT----LSRSFR-----SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 85 ~~~~~~--l~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
+++..+ +..... .+.++|+..|.-. ...++. .+++..+++.+-.+|++++.+++.++++++++.+.++
T Consensus 206 ~S~~a~e~~~~~~~-~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al 284 (383)
T COG0075 206 VSERALEAIEERKH-PSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL 284 (383)
T ss_pred ECHHHHHHHhcCCC-CceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 964321 111111 1234443221111 122221 2556667888888999999999999999999999997
Q ss_pred CCeEEEcCC--Cee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEE-EEEEECCEeEEEEE
Q 048438 154 KRFEVVFPC--HFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYM-TNVVLGGIYAIRFA 229 (239)
Q Consensus 154 ~g~~~~~~~--~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~-~~~~~~g~~~lR~~ 229 (239)
|++++.++ .++ +++|..+. +... . .+...+.+++.+.+ .........++|+.
T Consensus 285 -Gl~~~~~~~~~s~tvta~~~P~-g~~~------------------~----~~~~~~~~~~g~~i~gg~~~l~gkifRIG 340 (383)
T COG0075 285 -GLELFADPERRSPTVTAIKVPE-GVDD------------------K----KVRRALLKEYGVEIAGGQGPLKGKIFRIG 340 (383)
T ss_pred -CCccccCcccCCCceEEEECCC-CCCc------------------H----HHHHHHHHhCCEEecccccccCccEEEEe
Confidence 99998743 344 55555543 3210 1 22224555544444 44444445689999
Q ss_pred ecCC
Q 048438 230 TGAT 233 (239)
Q Consensus 230 ~~~~ 233 (239)
.|..
T Consensus 341 hMG~ 344 (383)
T COG0075 341 HMGN 344 (383)
T ss_pred cCcc
Confidence 8873
No 38
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.80 E-value=4.9e-18 Score=147.86 Aligned_cols=204 Identities=18% Similarity=0.121 Sum_probs=129.9
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.|-+|++++.++.+|.+.|+++|+++||++|+++|||+||+.|.++++ ...+ ++|++++++|||+++|.|+|++
T Consensus 158 ~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~-----~~~~-g~D~~~~s~~K~l~~~~~~G~l 231 (387)
T PRK09331 158 PPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVD-----GKKL-GADFIVGSGHKSMAASAPSGVL 231 (387)
T ss_pred CCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCC-----HHHc-CCCEEEeeCcccccCCCCEEEE
Confidence 577888999999999999999999999999999999999999987765 2223 4999999999999999999998
Q ss_pred EeeCcccccccccCCCCccCCCCce-ecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQ-ITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
+++ ++++........ .+...... +..+.+ ..++.++.++..+- +. .++.++.+++++++++.|++++|++++.+
T Consensus 232 ~~~-~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aal~~~~-~~-~~~~~~~~~~~~~l~~~L~~l~g~~~~~~ 307 (387)
T PRK09331 232 ATT-EEYADKVFRTSR-KFGVKEVELLGCTLRGAPLVTLMASFPHVV-ER-VKRWDEEVKKARWFVDELEKIEGFKQLGE 307 (387)
T ss_pred EEC-HHHHhhcccccC-CCcccceeeeceecCchHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHhcCCCEEEecc
Confidence 875 344433221100 01100001 111111 22344444444321 11 24566678899999999999999999853
Q ss_pred --CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 162 --CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 162 --~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
...+++.|..+.... ...........+.+.|.++|.... ......++|+..+. +|.
T Consensus 308 ~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~L~~~gI~~~---~~~~~~i~ri~~~g-~t~ 365 (387)
T PRK09331 308 KPRNHDLMKFETPSFDE---------------IAKKHKRRGFFLYEELKKRGIHGI---KPGATKEFKLSTYG-LTW 365 (387)
T ss_pred CcCcCCeEEEeCCchhH---------------HhhhccccchhHHHHHHHcCceEE---ccCCceEEEEEecc-CCH
Confidence 346777777652100 000001112357778877766522 12334677777655 443
No 39
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.79 E-value=7.9e-18 Score=144.77 Aligned_cols=159 Identities=10% Similarity=0.045 Sum_probs=114.5
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+.+|++++.+|.+|.+.|+++|+++|+++|+++|||+||+.+..+++ +..+ ++|++++++||| ++|.|+|++
T Consensus 138 ~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K~-~gp~g~g~l 210 (353)
T TIGR03235 138 DTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVD-----LSAD-RIDLISCSGHKI-YGPKGIGAL 210 (353)
T ss_pred CCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccc-----cccc-CCCEEEeehhhc-CCCCceEEE
Confidence 357888999999999999999999999999999999999999988776 3333 499999999999 579999999
Q ss_pred EeeCcccccccccCCCCccCC-CCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 84 WATNPEYLKNKATESKPVVDY-KDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
++++. .+...... ....+. ....++.++. ...+++..+++.+ .++.+++.++..++++++++.|++ +|++++.
T Consensus 211 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~ 286 (353)
T TIGR03235 211 VIRKR-GKPKAPLK-PIMFGGGQERGLRPGTLPVHLIVGMGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNG 286 (353)
T ss_pred EEccC-cccccccC-ceeeCCCCcCccccCCCChHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeC
Confidence 99754 22111000 000100 0011222222 1224455556654 357788889999999999999988 7999986
Q ss_pred CC---CeeEEEEEEcC
Q 048438 161 PC---HFAVVCFRVSP 173 (239)
Q Consensus 161 ~~---~~~iv~f~~~~ 173 (239)
++ ...+++|.+++
T Consensus 287 ~~~~~~~~i~~~~~~~ 302 (353)
T TIGR03235 287 DPAETIPHILNFSIDG 302 (353)
T ss_pred CcccccCCEEEEEeCC
Confidence 54 24689998764
No 40
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.79 E-value=2.8e-18 Score=147.60 Aligned_cols=204 Identities=15% Similarity=0.028 Sum_probs=134.1
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.|-+|++++.+|.+|.+.|+++|+++|+++|+++++|++|+.|..+++ .... ++|+++.++|||+++|.|+|++
T Consensus 124 ~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~-----~~~~-~~d~~~~s~~K~l~~p~g~G~l 197 (356)
T cd06451 124 DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFR-----MDEW-GVDVAYTGSQKALGAPPGLGPI 197 (356)
T ss_pred CCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCcccc-----cccc-CccEEEecCchhccCCCCccee
Confidence 466788888899999999999999999999999999999988766554 2222 4899999999999999999999
Q ss_pred EeeCccccccccc---CCCCccC------CCCce-ecCCCC-C-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438 84 WATNPEYLKNKAT---ESKPVVD------YKDWQ-ITLSRS-F-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS 151 (239)
Q Consensus 84 ~~~~~~~l~~~~~---~~~~~~~------~~~~~-~~~~~~-~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~ 151 (239)
++++ +++..... ....+.+ +.... ...+.. . ....+..+++.+...+++++.++..++++++.+.|.
T Consensus 198 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~ 276 (356)
T cd06451 198 AFSE-RALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLE 276 (356)
T ss_pred EECH-HHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9864 33322211 0000010 00000 111111 1 123445666766667888889999999999999999
Q ss_pred CCCCeEEEcCC--CeeEE-EEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-EECCEeEEE
Q 048438 152 GDKRFEVVFPC--HFAVV-CFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-VLGGIYAIR 227 (239)
Q Consensus 152 ~~~g~~~~~~~--~~~iv-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~g~~~lR 227 (239)
+. |++++.++ ..+++ .+++++. . + ...+.+.|.++..+++.+. ......++|
T Consensus 277 ~~-g~~~~~~~~~~~~~~~~~~~~~~-~--------------------~--~~~~~~~L~~~~gI~~~~g~~~~~~~~iR 332 (356)
T cd06451 277 AL-GLKLLAKPELRSPTVTAVLVPEG-V--------------------D--GDEVVRRLMKRYNIEIAGGLGPTAGKVFR 332 (356)
T ss_pred Hc-CCeeccCcccCCCceEEEECCCC-C--------------------C--HHHHHHHHHHhCCEEEecccccccCCEEE
Confidence 86 88887643 24554 3444321 1 0 1256677777734444322 111235999
Q ss_pred EEecCCCCCcC
Q 048438 228 FATGATLTEER 238 (239)
Q Consensus 228 ~~~~~~~t~~~ 238 (239)
++++..+|++|
T Consensus 333 is~~~~~~~e~ 343 (356)
T cd06451 333 IGHMGEATRED 343 (356)
T ss_pred EecCCCCCHHH
Confidence 99988877654
No 41
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.78 E-value=9.6e-18 Score=156.46 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=140.0
Q ss_pred CCccEEEEEecCCCCcccccC-hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-
Q 048438 2 GLIPLFLCATIGTTAITAVDP-LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD- 79 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~p-l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g- 79 (239)
|..+.+|++|+++| +|.++| +++|+++||++|.+++||||+..+....... +-.++|++++|.||+|++|.|
T Consensus 626 ~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~P-----g~~GaDi~~~s~HKtf~~P~G~ 699 (939)
T TIGR00461 626 GDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSP-----GDLGADVCHLNLHKTFCIPHGG 699 (939)
T ss_pred CCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCc-----cccCCCEEEecCCccCCCCCCC
Confidence 45788999999999 799987 9999999999999999999997654444311 222599999999999995554
Q ss_pred ----ceEEEeeCcccccccccCCC--CccCC--CC--ceecCCCCCCh----HHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 048438 80 ----CCCLWATNPEYLKNKATESK--PVVDY--KD--WQITLSRSFRS----LKLWFVIRNYGMENLRHFLRSHVNMARL 145 (239)
Q Consensus 80 ----~g~l~~~~~~~l~~~~~~~~--~~~~~--~~--~~~~~~~~~~~----~~~~~~l~~~g~~g~~~~~~~~~~la~~ 145 (239)
+|++.++.. +.+..+... ...+. .+ .....++.+++ +..|..++.+|.+|+++..+....+|+|
T Consensus 700 GGPg~G~i~vr~~--L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnY 777 (939)
T TIGR00461 700 GGPGMGPIGVKSH--LIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANY 777 (939)
T ss_pred CCCCeEEEEEhhh--chhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 599999752 222111100 00010 01 11222334444 7889999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-EE
Q 048438 146 FERLVSGDKRFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-VL 220 (239)
Q Consensus 146 l~~~l~~~~g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~ 220 (239)
+.++|++ +++++.+. ..+-++|++++.. ++.+..+..+.++|.+.|....+.. ..
T Consensus 778 l~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~------------------~~~g~~~~dIakrL~d~G~hapt~~~pv 837 (939)
T TIGR00461 778 MATRLKD--HYPILFVGTLKHVAHECILDLRPLK------------------AKTGIEAIDVAKRLQDYGFHAPTLSFPV 837 (939)
T ss_pred HHHHhhc--cCcccccCCCCceeEEEEEeccchh------------------hhcCCCHHHHHHHHHhCCeeccccCCcc
Confidence 9999987 66776653 3445777776421 1113445678889998888755433 34
Q ss_pred CCEeEEEEEe
Q 048438 221 GGIYAIRFAT 230 (239)
Q Consensus 221 ~g~~~lR~~~ 230 (239)
.|..++|.+-
T Consensus 838 ~g~lmiepTE 847 (939)
T TIGR00461 838 PGTLMVEPTE 847 (939)
T ss_pred CCeEEEEeec
Confidence 5677888775
No 42
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.78 E-value=3.7e-18 Score=149.83 Aligned_cols=198 Identities=17% Similarity=0.095 Sum_probs=127.4
Q ss_pred CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 82 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~ 82 (239)
++|.++ +++.++. |...|+++|.++|+++|++++||+||+.|.+.............++|++++++||+|++|.| |+
T Consensus 219 ~~plvi-i~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~ 295 (493)
T PRK13580 219 FKPLIL-VAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRG-GL 295 (493)
T ss_pred cCCEEE-EeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCe-EE
Confidence 356554 4577776 55779999999999999999999999999887543221112234699999999999999996 77
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~ 161 (239)
+++++ ++........ ++.+.+.-....++...++..+....+.++.++..+++++|++.|.+. |++++. .
T Consensus 296 I~~~~-~l~~~L~~a~-------P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~gg 366 (493)
T PRK13580 296 VLAKK-EYADAVDKGC-------PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTGG 366 (493)
T ss_pred EEecH-HHHHHHhhCC-------CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCC
Confidence 77754 3322221100 111111111122233334444432344667888889999999999986 998874 3
Q ss_pred CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHH-HHHHHHHHhcCcEEE---EEEEECC---EeEEEEEecCCC
Q 048438 162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFN-RELLESINASGKAYM---TNVVLGG---IYAIRFATGATL 234 (239)
Q Consensus 162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~g~~~~---~~~~~~g---~~~lR~~~~~~~ 234 (239)
.+++||.+.+.+. ... ..+.+.|.+.|.+.- .+++..+ ...||++++...
T Consensus 367 TdshIV~V~lg~~-----------------------~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~t 423 (493)
T PRK13580 367 TDNHLVLIDVTSF-----------------------GLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALT 423 (493)
T ss_pred CCCCEEEEEeCCH-----------------------HHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhh
Confidence 5678999998652 222 244556777776532 2344455 678999977755
Q ss_pred C
Q 048438 235 T 235 (239)
Q Consensus 235 t 235 (239)
|
T Consensus 424 t 424 (493)
T PRK13580 424 T 424 (493)
T ss_pred h
Confidence 4
No 43
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.78 E-value=6.3e-18 Score=147.52 Aligned_cols=203 Identities=16% Similarity=0.089 Sum_probs=128.6
Q ss_pred cEEEEEecCCCCcccccCh-hHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-----
Q 048438 5 PLFLCATIGTTAITAVDPL-KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL----- 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl-~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~----- 78 (239)
+.+|++++.+ .+|.+.|+ ++|+++|++||+++++|++|+.+..+.+. ..+ ++|++++++|||+ .|.
T Consensus 160 t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~-----~~~-~~d~~~~s~~K~~-~p~g~Ggp 231 (398)
T cd00613 160 VAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPP-----GEY-GADIVVGNLQKTG-VPHGGGGP 231 (398)
T ss_pred eEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCCh-----HHc-CCCEEEeeccccC-CCCCCCCC
Confidence 5567777765 68999985 99999999999999999999876544431 112 4999999999998 664
Q ss_pred cceEEEeeCcccccccccC---CC--------CccCCCC----ceecCCCC-------CChHHHHHHHHHhCHHHHHHHH
Q 048438 79 DCCCLWATNPEYLKNKATE---SK--------PVVDYKD----WQITLSRS-------FRSLKLWFVIRNYGMENLRHFL 136 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~---~~--------~~~~~~~----~~~~~~~~-------~~~~~~~~~l~~~g~~g~~~~~ 136 (239)
++|++++++ .++...... .. ..++... ...+.++. ..+...+..+..++.++++++.
T Consensus 232 ~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~ 310 (398)
T cd00613 232 GAGFFAVKK-ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIA 310 (398)
T ss_pred ceeEEEEhh-hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 467888753 333221100 00 0000000 00111111 1123344556777888999999
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE
Q 048438 137 RSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT 216 (239)
Q Consensus 137 ~~~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 216 (239)
++..++++++.+.|+++++......+..++++|+++... ......+.++|.++|... .
T Consensus 311 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~---------------------~~~~~~~~~~L~~~gi~~-~ 368 (398)
T cd00613 311 ERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLY---------------------GIRAEDLAKALIDGGFHA-P 368 (398)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcc---------------------hHHHHHHHHhhhhcCccc-c
Confidence 999999999999999875544222344567778775310 011235666677666543 2
Q ss_pred EEEECCEeEEEEEecCCCCCcC
Q 048438 217 NVVLGGIYAIRFATGATLTEER 238 (239)
Q Consensus 217 ~~~~~g~~~lR~~~~~~~t~~~ 238 (239)
...+.+...+|++++.++|.+|
T Consensus 369 ~~~~~~~~~lRis~~~~~t~ed 390 (398)
T cd00613 369 TMYLPVDGTLMIEPTETETKEE 390 (398)
T ss_pred ccccCCCCeEEEEcCCCCCHHH
Confidence 2223456789999998888764
No 44
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.78 E-value=1.8e-18 Score=148.39 Aligned_cols=195 Identities=10% Similarity=0.030 Sum_probs=134.7
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|.+|+.+|+||...| ++++.+++.++|||+++++..+++ ++. .|++++++||+++ |.|.|++
T Consensus 130 ~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id-----~~~---~d~~~~ssqK~lg-P~Glg~l 195 (349)
T TIGR01364 130 DAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPID-----VSK---FGLIYAGAQKNIG-PAGLTVV 195 (349)
T ss_pred CCCEEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCccCC-----HHH---ccEEEEecccccC-CCceEEE
Confidence 3558999999999999987 667778999999999999999987 443 6799999999975 9999999
Q ss_pred EeeCcccccccccCCCCccCCCCc---eecCCCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 84 WATNPEYLKNKATESKPVVDYKDW---QITLSRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
++++ ..+....+....+.++... ....+++ ...+++..+++.+..+ |++++.+++.++++++++.|++++|+.
T Consensus 196 ~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~ 274 (349)
T TIGR01364 196 IVRK-DLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFY 274 (349)
T ss_pred EECH-HHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 9964 3332221111111111100 0001222 2235566678888777 699999999999999999999998876
Q ss_pred EEcC-C--Ce-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 158 VVFP-C--HF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 158 ~~~~-~--~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
.... + ++ .+++|.+++. .+...+++.+.++|......... ...+|+|++.+
T Consensus 275 ~~~~~~~~rs~~v~sf~~~~~-----------------------~~~~~~~~~~~~~Gi~~~~~~~~--~g~vRvS~~~~ 329 (349)
T TIGR01364 275 RNPVDPRNRSRMNVVFTLGNE-----------------------ELEKRFLKEAEERGLVSLKGHRS--VGGMRASIYNA 329 (349)
T ss_pred ccCCCHHHcCCeEEEEecCCh-----------------------hHhHHHHHHHHHCCCcccCCccc--cCeeEEECcCC
Confidence 5532 1 34 5688987652 11235556677778733322221 24899999999
Q ss_pred CCCcC
Q 048438 234 LTEER 238 (239)
Q Consensus 234 ~t~~~ 238 (239)
+|.+|
T Consensus 330 nt~ed 334 (349)
T TIGR01364 330 MPLEG 334 (349)
T ss_pred CCHHH
Confidence 98765
No 45
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.78 E-value=1.2e-18 Score=150.03 Aligned_cols=193 Identities=11% Similarity=0.050 Sum_probs=133.9
Q ss_pred cEEEEEecCCCCccccc-ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 5 PLFLCATIGTTAITAVD-PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~-pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
|-+|.+|+.+|.||.++ ||++| +|++++|||+++++..+++ ++. .|++++++||+++ |.|.|++
T Consensus 142 ~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~id-----v~~---~d~~~~ssqK~lg-P~Glg~l 206 (360)
T PRK05355 142 AAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPID-----VSK---FGLIYAGAQKNIG-PAGLTIV 206 (360)
T ss_pred CCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCC-----HHH---ccEEEEecccccc-CCceEEE
Confidence 56899999999999998 78877 8999999999999999887 444 6799999999975 9999999
Q ss_pred EeeCcccccccccCCCCccCCCCce---ecCCCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQ---ITLSRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
++++ +.+....+....+.++..+. ...+++ ...+++..+++.+-.+ |++++.+++.++++++++.|++++.+.
T Consensus 207 ~~s~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~ 285 (360)
T PRK05355 207 IVRE-DLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYR 285 (360)
T ss_pred EECH-HHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9965 33322211011122211100 011222 2335666778887777 799999999999999999999985333
Q ss_pred EEcC--CCe-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 158 VVFP--CHF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 158 ~~~~--~~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
.+.+ .++ .+++|.+++. .....+++.+.++|....... .....+|+|+++++
T Consensus 286 ~~~~~~~rs~~v~sf~~~~~-----------------------~~~~~~~~~~~~~Gi~~~~~~--~~~g~vRiS~~~~n 340 (360)
T PRK05355 286 NPVAPEDRSRMNVPFTLADE-----------------------ELDKKFLAEAKAAGLVGLKGH--RSVGGMRASIYNAM 340 (360)
T ss_pred cCCChhhcCCcEEEEEcCCh-----------------------HHHHHHHHHHHHCCCcccCCC--CccCcEEEECCCCC
Confidence 3332 234 5799998652 122355566667777753222 22358999999999
Q ss_pred CCcC
Q 048438 235 TEER 238 (239)
Q Consensus 235 t~~~ 238 (239)
|.+|
T Consensus 341 t~ee 344 (360)
T PRK05355 341 PLEG 344 (360)
T ss_pred CHHH
Confidence 8765
No 46
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.78 E-value=9e-18 Score=158.64 Aligned_cols=208 Identities=15% Similarity=0.064 Sum_probs=129.9
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce--
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC-- 81 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g-- 81 (239)
.+++|++|.++|..+..+|+++|+++||++|+|+||||||..+.+.+... +..++|++++++|||++.|.|+|
T Consensus 640 ~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~p-----g~~GADi~~~s~HK~f~~P~G~GGP 714 (954)
T PRK05367 640 NLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARP-----GDIGADVSHLNLHKTFCIPHGGGGP 714 (954)
T ss_pred CeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCCh-----hhcCCCEEEecCcccCCCCcCCCCC
Confidence 57888999998874446999999999999999999999998765554421 11259999999999998887754
Q ss_pred ---EEEeeCcccccccccCCCC--ccCCCCceecCCCCC----ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 82 ---CLWATNPEYLKNKATESKP--VVDYKDWQITLSRSF----RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 82 ---~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
++++++ .+.+....... ..+........+.++ .+...|..++.+|.+|++++.++...+++|+.++|++
T Consensus 715 g~G~l~vr~--~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~ 792 (954)
T PRK05367 715 GVGPIGVKA--HLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKD 792 (954)
T ss_pred ceEEEeecc--cccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 898864 22221111100 000000111111222 2345778889999999999999999999999999987
Q ss_pred CCCeEEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEe
Q 048438 153 DKRFEVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230 (239)
Q Consensus 153 ~~g~~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~ 230 (239)
...+...++ +..+-..|.+.+... .. +..+..+.++|.+.|....+. .+.....+|+++
T Consensus 793 ~~~~~~~~~~~~~~~e~i~~~~~~~~--------------~~----g~~~~di~krL~d~G~~~~t~-~~pv~~~l~i~p 853 (954)
T PRK05367 793 HYPVLYTGANGRVAHECILDLRPLKE--------------ST----GITVDDIAKRLIDYGFHAPTM-SFPVAGTLMVEP 853 (954)
T ss_pred hcCccccCCCCCcccceEEEeecccc--------------cC----CCCHHHHHHHHHHCCCeEeec-CCccCCEEEEEe
Confidence 422222222 223334444432110 00 011246777887777765542 233345677777
Q ss_pred cCCCCCc
Q 048438 231 GATLTEE 237 (239)
Q Consensus 231 ~~~~t~~ 237 (239)
+-.+|.+
T Consensus 854 tE~~s~~ 860 (954)
T PRK05367 854 TESESKA 860 (954)
T ss_pred eecCCHH
Confidence 6655544
No 47
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.78 E-value=9.9e-19 Score=150.76 Aligned_cols=200 Identities=10% Similarity=-0.030 Sum_probs=132.6
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|+++|.+|.+|.++|+++| +|++|++++|||+|++++.+++ ++. +|++++++|||+++|.|.+++
T Consensus 128 ~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~id-----v~~---~D~~~~s~~K~lg~~~Gl~~~ 196 (361)
T TIGR01366 128 GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVD-----IAE---TDVYYFAPQKNFASDGGLWLA 196 (361)
T ss_pred CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCCCCC-----HHH---CCEEEEEchhhcCCCCceEEE
Confidence 45689999999999999999998 5899999999999999999887 443 899999999999999888887
Q ss_pred EeeCccccccccc---CC---CCccCCC---CceecCCCCCC-----hHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKAT---ES---KPVVDYK---DWQITLSRSFR-----SLKLWFVIRNYGME-NLRHFLRSHVNMARLFER 148 (239)
Q Consensus 84 ~~~~~~~l~~~~~---~~---~~~~~~~---~~~~~~~~~~~-----~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~ 148 (239)
+++. ..+..... .. +.+.++. ....+.++... .+++..+++.+..+ |++++.+++.++++++++
T Consensus 197 ~~s~-~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~ 275 (361)
T TIGR01366 197 IMSP-AALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYS 275 (361)
T ss_pred EECH-HHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 7754 33322111 00 0112211 11112222221 13555677777666 588888999999999999
Q ss_pred HHhCCCCeEEEcC-C--CeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEe
Q 048438 149 LVSGDKRFEVVFP-C--HFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIY 224 (239)
Q Consensus 149 ~l~~~~g~~~~~~-~--~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~ 224 (239)
.|.+.++++++.+ + .+++ .+|.++ .+.. ...+.+.|.++|.........-+..
T Consensus 276 ~l~~~~~~~~~~~~~~~~s~~v~~v~~~-~g~~----------------------~~~v~~~L~~~gI~i~~~~~~l~~~ 332 (361)
T TIGR01366 276 WAQERPYATPFVTDPGKRSQVVGTIDFV-DDID----------------------AATVAKILRANGIVDTEPYRKLGRN 332 (361)
T ss_pred HHHhCCCcccCCCChhhcccceEEEECC-CccC----------------------HHHHHHHHHHCCCeeccCccccCCC
Confidence 9999876776642 2 1222 233333 2210 1246666766776654332112346
Q ss_pred EEEEEecCCCCCcC
Q 048438 225 AIRFATGATLTEER 238 (239)
Q Consensus 225 ~lR~~~~~~~t~~~ 238 (239)
++|++.+.++|.+|
T Consensus 333 ~vRis~~~~~t~~d 346 (361)
T TIGR01366 333 QLRVAMFPAIDPDD 346 (361)
T ss_pred cEEEEcCCCCCHHH
Confidence 89999999888764
No 48
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.77 E-value=6.2e-18 Score=145.09 Aligned_cols=204 Identities=16% Similarity=0.168 Sum_probs=131.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
+.+|+.++.+|.+|.+.|+++|+++|++||++++||++|+.+..+++ +..+ ++|++++++|||+++|.|+|+++
T Consensus 126 ~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~-----~~~~-~~d~~~~s~~K~l~~~~G~g~~~ 199 (355)
T TIGR03301 126 ITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPID-----IEEL-DVDALIASANKCLEGVPGFGFVI 199 (355)
T ss_pred ceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccc-----hhhc-CccEEEecCCcccccCCceeEEE
Confidence 45677888899999999999999999999999999999987766554 3333 49999999999999999999999
Q ss_pred eeCcccccccc-cCCCCccCCCC-c---eecCCCCCC-----hHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHhCC
Q 048438 85 ATNPEYLKNKA-TESKPVVDYKD-W---QITLSRSFR-----SLKLWFVIRNYGMEN-LRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 85 ~~~~~~l~~~~-~~~~~~~~~~~-~---~~~~~~~~~-----~~~~~~~l~~~g~~g-~~~~~~~~~~la~~l~~~l~~~ 153 (239)
+++ +.+.... .......+... + ......++. ..++..+++.+..++ +++..++..++++++.+.|++.
T Consensus 200 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~ 278 (355)
T TIGR03301 200 ARR-DLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL 278 (355)
T ss_pred ECH-HHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc
Confidence 854 3332211 00001111000 0 000111211 133344566554554 7888888899999999999886
Q ss_pred CCeEEEcCCC--ee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEe
Q 048438 154 KRFEVVFPCH--FA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230 (239)
Q Consensus 154 ~g~~~~~~~~--~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~ 230 (239)
|++++.++. .+ +++|++++.. ......+.++|.++|.+..... .....++|+++
T Consensus 279 -g~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~~~gi~i~~~~-~~~~~~iRis~ 335 (355)
T TIGR03301 279 -GFQPLLPERWQSPIIVSFLYPDDP---------------------DFDFDDFYQELKERGFVIYPGK-LTLADTFRIGT 335 (355)
T ss_pred -CCeeecCCCCCCCcEEEEECCCCC---------------------cchHHHHHHHHHHCCEEEECCc-cccccEEEEec
Confidence 888765532 33 4667775421 0011356677777776543322 11236899998
Q ss_pred cCCCCCcC
Q 048438 231 GATLTEER 238 (239)
Q Consensus 231 ~~~~t~~~ 238 (239)
+.++|.+|
T Consensus 336 ~~~~~~~~ 343 (355)
T TIGR03301 336 IGEIDAAD 343 (355)
T ss_pred CCCCCHHH
Confidence 88776543
No 49
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.77 E-value=6.2e-18 Score=149.96 Aligned_cols=196 Identities=12% Similarity=0.145 Sum_probs=123.5
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.|-+|++ +.+.+|.+.|+++|+++||++|+++|||+||++|.++.+.... .+.++|++++++||||++|.| |++
T Consensus 182 ~~~lvi~--~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~---~~~~~D~l~~S~hK~l~GP~G-g~l 255 (452)
T PTZ00094 182 RPKLIIA--GASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPS---PFPYADVVTTTTHKSLRGPRS-GLI 255 (452)
T ss_pred CCCEEEE--eCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCC---CCCCCcEEEcCCccCCCCCCc-eEE
Confidence 3544443 3457999999999999999999999999999999987653221 122599999999999999998 777
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP- 161 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~- 161 (239)
++++. ............. .+ .+.++.. ...+++..+++.+...+++++.++..+++++|.+.|.+. |++++.+
T Consensus 256 ~~~~~-~~~~l~~~~~~~~--~p-~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~ 330 (452)
T PTZ00094 256 FYRKK-VKPDIENKINEAV--FP-GLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGG 330 (452)
T ss_pred EEecc-cchHHHHhhcccc--CC-CCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCC
Confidence 77542 2111100000000 00 1122222 233556667777655566778888889999999999885 9988753
Q ss_pred --CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-EEC-----CEeEEEEEecCC
Q 048438 162 --CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-VLG-----GIYAIRFATGAT 233 (239)
Q Consensus 162 --~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~-----g~~~lR~~~~~~ 233 (239)
....+|.|..++.. ...+...|.+.|.. ++.. ... ....+|++++.+
T Consensus 331 ~~~~~~~v~~~~~~~~------------------------~~~~~~~L~~~gI~-vs~~~~p~~~~~~~~~~vRis~~~~ 385 (452)
T PTZ00094 331 TDNHLVLVDLRPFGIT------------------------GSKMEKLLDAVNIS-VNKNTIPGDKSALNPSGVRLGTPAL 385 (452)
T ss_pred CCCceEeecCCcCCCC------------------------HHHHHHHHHHCCcE-EecccCCCCCcCCCCCeEEECCHHH
Confidence 22345555443321 11444455444444 4322 111 126899998877
Q ss_pred CC
Q 048438 234 LT 235 (239)
Q Consensus 234 ~t 235 (239)
+|
T Consensus 386 tt 387 (452)
T PTZ00094 386 TT 387 (452)
T ss_pred Hh
Confidence 66
No 50
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.77 E-value=8.8e-18 Score=145.24 Aligned_cols=203 Identities=17% Similarity=0.136 Sum_probs=133.1
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA 85 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~ 85 (239)
-+|.+++.+|.+|.+.|+++|+++||++|++++||++|+.+..+++ +..+ ++|++++++|||+++|.|+|++++
T Consensus 133 ~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~-----~~~~-~~d~~v~s~~K~l~g~~G~G~l~~ 206 (368)
T PRK13479 133 THVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPID-----IAEL-GIDALISSANKCIEGVPGFGFVIA 206 (368)
T ss_pred cEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCcccc-----cccc-CceEEEecCccccccCCCceEEEE
Confidence 3677889999999999999999999999999999999988876554 3333 399999999999999999999998
Q ss_pred eCcccccccccCC-CCccCCC---Ccee-cCCCCC-----ChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 86 TNPEYLKNKATES-KPVVDYK---DWQI-TLSRSF-----RSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 86 ~~~~~l~~~~~~~-~~~~~~~---~~~~-~~~~~~-----~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
+. +.+....... ....+.. .+.. ...+++ ..+.+..+++.+..+ +++++.++..++++++.+.|++.
T Consensus 207 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 284 (368)
T PRK13479 207 RR-SELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL- 284 (368)
T ss_pred CH-HHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-
Confidence 54 3332211100 0011100 0000 011111 123444556655333 46788889999999999999987
Q ss_pred CeEEEcCC--Ce-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438 155 RFEVVFPC--HF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG 231 (239)
Q Consensus 155 g~~~~~~~--~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~ 231 (239)
|++++.++ .+ .+++|.++.... .....+.++|.++|.++.... ......+|++.+
T Consensus 285 g~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~L~~~gi~v~~g~-~~~~~~iRis~~ 342 (368)
T PRK13479 285 GFEPLLDAEIQSPIIVTFHAPADPA---------------------YDFKEFYERLKEQGFVIYPGK-LTQVDTFRIGCI 342 (368)
T ss_pred CCcccCCchhcCceEEEEECCCCCC---------------------cCHHHHHHHHHHCCEEEecCC-CCCCCEEEEecC
Confidence 88876543 23 357777654210 001267777877877654321 112357899988
Q ss_pred CCCCCcC
Q 048438 232 ATLTEER 238 (239)
Q Consensus 232 ~~~t~~~ 238 (239)
.++|.+|
T Consensus 343 ~~~t~ed 349 (368)
T PRK13479 343 GDVDAAD 349 (368)
T ss_pred CCCCHHH
Confidence 8777654
No 51
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=99.76 E-value=4.6e-18 Score=144.64 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=70.8
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|.+.+.++++|.++|++||+++|+++|+.+|+||||+.|.+++| ++.+. +|++++++|||++ |+|+|+|
T Consensus 181 ~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vD-----V~eln-~D~~s~s~HK~yg-p~~iGaL 253 (428)
T KOG1549|consen 181 KTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVD-----VQELN-ADFLSISAHKIYG-PPGIGAL 253 (428)
T ss_pred CceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCcccc-----HHHcC-chheeeecccccC-CCcceEE
Confidence 467899999999999999999999999999999999999999999998 77775 9999999999965 6669999
Q ss_pred EeeC
Q 048438 84 WATN 87 (239)
Q Consensus 84 ~~~~ 87 (239)
|++.
T Consensus 254 Yvr~ 257 (428)
T KOG1549|consen 254 YVRR 257 (428)
T ss_pred EEcc
Confidence 9975
No 52
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.76 E-value=3.3e-18 Score=142.06 Aligned_cols=190 Identities=19% Similarity=0.213 Sum_probs=127.4
Q ss_pred ccEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcc--cccccCCCCCcceEEEcCcccCCCcc
Q 048438 4 IPLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPE--FRHFIDGVEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~--~~~~~~~~~~~Ds~~~~~hK~l~~P~ 78 (239)
.|.++..|.-| +.|++-|+ ++|.++||++|+.||+|||.-+.++.... .+.+. .++|++++++.|.++.|.
T Consensus 131 ~~~~~~e~~~t-e~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~---~~~D~v~~~~tK~g~~~~ 206 (342)
T COG2008 131 TPLAVLENTAT-EGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIK---SYVDSVSFCLTKGGGAPV 206 (342)
T ss_pred CceEEEeeccC-CCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHH---hhCCEEEEecccCCccee
Confidence 56677666666 88998775 55677899999999999998776654422 11122 259999999999999996
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCC---CCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLS---RSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
|+ +++.++++.+.... ..+...++ .++-+++....| ..+-+....+|.+++|++|.+.+.+.+|
T Consensus 207 gA--iv~gn~~~~~~a~~--------~rK~~Ggl~~k~r~laA~~~~~l---~~~~~~~~~~Han~mA~~La~~~~~~~G 273 (342)
T COG2008 207 GA--IVFGNRDFAKRARR--------WRKRAGGLMRKARFLAAQGLYAL---EDDVWRLAADHANAMAARLAEGLEAKPG 273 (342)
T ss_pred ee--EEEcCHHHHHHHHH--------HHHHhcccHhhhhHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 54 55556666554421 00111111 123333332333 3344667777888899999999998899
Q ss_pred eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCE-eEEEEEecCCC
Q 048438 156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGI-YAIRFATGATL 234 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~-~~lR~~~~~~~ 234 (239)
+++..|+++|+|.++++.. . .+.+...+..++......+. ..+|++ ++|.
T Consensus 274 ~~~~~~~~tN~vf~~l~~~---------------------------~-i~~l~~~~~~~~~~~~~~~~~~~vRfv-ts~a 324 (342)
T COG2008 274 VKLAFPVETNMVFVRLPES---------------------------A-IEALRLAGALFYRGVLIGAHGEIVRFV-TSWA 324 (342)
T ss_pred ceeccCCcccEEEEECChH---------------------------H-HHHHHhhchhheeeeeccCCCceEEEE-eecc
Confidence 9999999999999998752 1 14555566666654444333 489999 8888
Q ss_pred CCcCC
Q 048438 235 TEERH 239 (239)
Q Consensus 235 t~~~~ 239 (239)
|++||
T Consensus 325 ~~~ed 329 (342)
T COG2008 325 TSEED 329 (342)
T ss_pred CCHHH
Confidence 88764
No 53
>PRK02948 cysteine desulfurase; Provisional
Probab=99.76 E-value=2.7e-17 Score=142.88 Aligned_cols=155 Identities=10% Similarity=0.114 Sum_probs=106.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
+.+|+.++.+|.+|.+.|+++|.++|+++|+++|||++|+.+..+.+ +..+ ++|++++++||+ ++|.|+|+++
T Consensus 139 ~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~-----~~~~-~~d~~~~s~~K~-~gp~G~G~l~ 211 (381)
T PRK02948 139 TVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPID-----VFEM-GIDSLSVSAHKI-YGPKGVGAVY 211 (381)
T ss_pred CEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccC-----cccC-CCCEEEecHHhc-CCCCcEEEEE
Confidence 56888999999999999999999999999999999999998877665 3333 499999999997 5699999999
Q ss_pred eeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-
Q 048438 85 ATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP- 161 (239)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~- 161 (239)
+++...+...... .. ....+..++. ...+++..+++.+. +.++++.++..++++++.+.|+++ ++++...
T Consensus 212 ~~~~~~~~~~~~~---~~--~~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~ 284 (381)
T PRK02948 212 INPQVRWKPVFPG---TT--HEKGFRPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFLEQIQTL-PLPIEVEG 284 (381)
T ss_pred EcCCCCCCCcccC---CC--CCCCcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeC
Confidence 8643211111100 00 0011112221 12234444555432 456778889999999999999987 6554421
Q ss_pred -C---CeeEEEEEEcC
Q 048438 162 -C---HFAVVCFRVSP 173 (239)
Q Consensus 162 -~---~~~iv~f~~~~ 173 (239)
+ ...+++|.+++
T Consensus 285 ~~~~~~~~i~~~~~~~ 300 (381)
T PRK02948 285 HSTSCLPHIIGVTIKG 300 (381)
T ss_pred CCccCcCCEEEEEeCC
Confidence 1 13578888764
No 54
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.74 E-value=3.3e-17 Score=146.17 Aligned_cols=206 Identities=16% Similarity=0.089 Sum_probs=125.4
Q ss_pred cEEEEEecCCCCcccc-cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc---
Q 048438 5 PLFLCATIGTTAITAV-DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC--- 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i-~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~--- 80 (239)
+.+|+++..+ .+|.+ +|+++|+++||++|+|+|||+||..+.+.... ...+ ++|++++++||||++|.|+
T Consensus 209 t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~----~~~~-GaD~~~~~~hK~l~~P~g~Ggp 282 (481)
T PRK04366 209 TAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKAR----PGDM-GFDVVHLNLHKTFSTPHGGGGP 282 (481)
T ss_pred CeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCC----cccc-CCCEEEEechhhcCCCCCCCCC
Confidence 4566666644 78988 68999999999999999999999766432111 1122 4999999999999988665
Q ss_pred --eEEEeeCccccccccc------CCCCccCCC-CceecCCCCC-----ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 048438 81 --CCLWATNPEYLKNKAT------ESKPVVDYK-DWQITLSRSF-----RSLKLWFVIRNYGMENLRHFLRSHVNMARLF 146 (239)
Q Consensus 81 --g~l~~~~~~~l~~~~~------~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l 146 (239)
|++++++ .+...... .....+++. ...+...+.+ .+++.|..+..+|.+|++++.++..++++|+
T Consensus 283 ~~G~l~~~~-~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l 361 (481)
T PRK04366 283 GSGPVGVKE-ELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYL 361 (481)
T ss_pred Ceeeeeehh-hhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888764 22221110 001111110 0011011112 2356777788999999999999999999999
Q ss_pred HHHHhCCCCeEEEcC-CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE-CCEe
Q 048438 147 ERLVSGDKRFEVVFP-CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL-GGIY 224 (239)
Q Consensus 147 ~~~l~~~~g~~~~~~-~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~g~~ 224 (239)
+++|+++ +++..+ +..+.+.|..+.-.. + +.-...+.++|.++|......... ....
T Consensus 362 ~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~----g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~ 420 (481)
T PRK04366 362 KARLKDI--YDLPYDRPCMHEFVLSGKKLKE---------------T----GVRTLDIAKRLLDYGFHPPTIYFPLIVPE 420 (481)
T ss_pred HHHhHhh--CcccCCCCeeEEEEEECccccc---------------c----CCCHHHHHHHHHHCCccCCccccccccCC
Confidence 9999986 444332 233334343221000 0 011236777777777653311111 1134
Q ss_pred EEEEEecCCCCCcC
Q 048438 225 AIRFATGATLTEER 238 (239)
Q Consensus 225 ~lR~~~~~~~t~~~ 238 (239)
.+|++++-.+|.+|
T Consensus 421 ~l~is~~e~~t~ed 434 (481)
T PRK04366 421 ALMIEPTETESKET 434 (481)
T ss_pred eEEEcccCCCCHHH
Confidence 79999888777654
No 55
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.74 E-value=1.9e-16 Score=136.59 Aligned_cols=200 Identities=16% Similarity=0.107 Sum_probs=125.9
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|++++.+|.+|.+.|+++|.++||++|+++|||+||+.+..+++ ...+ ++|+++.++||++++|.++|++
T Consensus 139 ~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~-----~~~~-~~d~~~~s~~K~l~~~~~~G~l 212 (361)
T cd06452 139 PPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVS-----GKEL-GADFIVGSGHKSMAASAPIGVL 212 (361)
T ss_pred CceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCC-----HHHc-CCCEEEecCCccccCCCCeEEE
Confidence 567888899999999999999999999999999999999998766554 2222 3899999999999988889988
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF- 160 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~- 160 (239)
++++ +.+....... ..++.......+++. ..++.++.+++.+ .+. .++.++..+.++++.+.|++++|++++.
T Consensus 213 ~~~~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~-~~~~~~~~~~~~~l~~~L~~l~g~~v~~~ 288 (361)
T cd06452 213 ATTE-EWADIVFRTS-QMFKIKEVELLGCTLRGAPLVTLMASFPHV-KER-VKRWDEEVEKARWFVAELEKIEGIKQLGE 288 (361)
T ss_pred EECH-HHHHHHhccc-cccccceeeeeccccCchHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 8753 3333321110 011111111111221 1233444444432 222 3445555677899999999998999884
Q ss_pred -CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHH-HHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438 161 -PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQI-NEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 161 -~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
+...|++.|+.+... ..... ..-...+.+.|.++|.... ...-..++|++++.
T Consensus 289 ~~~~~n~~~~~~~~~~----------------~~~~~~~~~~~~~~~~L~~~gI~~~---~~~~~~~~ri~~~g 343 (361)
T cd06452 289 KPKNHDLMFFETPSFD----------------EIAKKHKRRGYFLYSELKKRGIHGI---KPGLTRYFKLSTYG 343 (361)
T ss_pred CCCCCceEEEEcCCcc----------------hhhhhccccchhHHHHHHHcCceEE---cCCCceEEEEEecC
Confidence 346788888865210 00000 0001257777877776621 12223488999744
No 56
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.74 E-value=1.6e-17 Score=143.05 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=127.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
+-+|++++.+|.+|.+.+ ++++.||+.++|||+|++|..+++ ++. .|...+++||++ +|.|+|+++
T Consensus 139 ~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~id-----v~~---~~~~~ss~~K~l-GP~G~g~l~ 204 (355)
T cd00611 139 AAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPID-----VSK---FGVIYAGAQKNL-GPAGVTVVI 204 (355)
T ss_pred CCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCC-----HHH---hCEEEeeccccc-CCCceEEEE
Confidence 457899999999999832 445569999999999999999987 444 445556799986 599999999
Q ss_pred eeCcccccccccCCCCccCCCC---ceecCCCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeE-
Q 048438 85 ATNPEYLKNKATESKPVVDYKD---WQITLSRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFE- 157 (239)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~- 157 (239)
+++ +.+....+......++.. .....+++ ...+++..+++.+-.+ |++++.+++.++++++++.|++++|+.
T Consensus 205 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~ 283 (355)
T cd00611 205 VRK-DLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYR 283 (355)
T ss_pred ECH-HHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 965 333222111111111100 00012232 2346677788888777 799999999999999999999998863
Q ss_pred EEcC--CCe-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 158 VVFP--CHF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 158 ~~~~--~~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
...+ .++ .+++|.+++. .+...+.+.+.++|.. .+...+-...+|+|++.++
T Consensus 284 ~~~~~~~rs~~vvsf~~~~~-----------------------~l~~~~~~~~~r~G~~--~~~~~~~~g~vR~S~~~~n 338 (355)
T cd00611 284 GPVDKRARSRMNVPFRLGKE-----------------------ELEKEFLKEAEAAGMI--GLKGHRSVGGIRASIYNAL 338 (355)
T ss_pred cCCCHHHcCceEEEEEcCCh-----------------------hhhHHHHHHHHHCCCc--ccCCCcccCeEEEEccCCC
Confidence 2111 234 4699998652 1223444455567775 2222222358999999999
Q ss_pred CCcC
Q 048438 235 TEER 238 (239)
Q Consensus 235 t~~~ 238 (239)
|.+|
T Consensus 339 t~ed 342 (355)
T cd00611 339 SLEG 342 (355)
T ss_pred CHHH
Confidence 8775
No 57
>PRK14012 cysteine desulfurase; Provisional
Probab=99.73 E-value=4.6e-17 Score=142.54 Aligned_cols=145 Identities=11% Similarity=0.073 Sum_probs=101.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
+.+|++++.+|.+|.+.|+++|.++||++|+++|+|+||+++..+++ +..+ .+|++++++||. ++|.|+|+++
T Consensus 145 t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~-----~~~~-~~D~~~~s~~K~-~gp~g~G~l~ 217 (404)
T PRK14012 145 TILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPID-----LSKL-KVDLMSFSAHKI-YGPKGIGALY 217 (404)
T ss_pred CEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccC-----cccC-CCCEEEEehhhc-cCCCceEEEE
Confidence 56888999999999999999999999999999999999999988765 3333 499999999995 5788999999
Q ss_pred eeCcccccccccC-CCCccCCCCceecCCCCC--ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 85 ATNPEYLKNKATE-SKPVVDYKDWQITLSRSF--RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 85 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
+++.... ...+. .+... ...++.+... ..+.+-.+++.+ ...+.++.++..++++++.+.|++++++++..+
T Consensus 218 ~~~~~~~-~~~~~~~g~~~---~~~~~~gt~~~~~~~~l~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~ 292 (404)
T PRK14012 218 VRRKPRV-RLEAQMHGGGH---ERGMRSGTLPTHQIVGMGEAARIA-KEEMATENERIRALRDRLWNGIKDIEEVYLNGD 292 (404)
T ss_pred EecCCCC-CCCceecCCCc---cCCccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 9754322 11110 00000 0011122111 112232344433 234566778889999999999999988887643
No 58
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.72 E-value=7.7e-17 Score=141.11 Aligned_cols=147 Identities=12% Similarity=0.167 Sum_probs=108.0
Q ss_pred CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccccc-CCC--CCcceEEEcCcccCCCccc
Q 048438 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI-DGV--EGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~-~~~--~~~Ds~~~~~hK~l~~P~g 79 (239)
+.+++|+.+.++...|..||+++|+++|++||+|+|||+||+.+..... ... .++ +.+|++++++||++.+|.+
T Consensus 204 kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~---~~~~~g~~~Grad~vv~s~hK~l~~pg~ 280 (444)
T TIGR03531 204 DNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYM---ELINKAIKVGRVDAVVSSTDKNFMVPVG 280 (444)
T ss_pred CCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhh---hhhhccccccCCCeEEEeCccCCCCCCC
Confidence 4456666666667778999999999999999999999999997542221 111 122 2489999999999999999
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC---Ce
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK---RF 156 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~---g~ 156 (239)
+|++++++++++....... . . ......+..+|..+..+|.+++++++++..++++++.+.|+++. |.
T Consensus 281 Gg~I~~~d~el~~~i~~~y---~----g---~~~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~ 350 (444)
T TIGR03531 281 GAIIYSFDENFIQEISKSY---P----G---RASASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGE 350 (444)
T ss_pred EEEEEECCHHHHHHHHHhc---c----C---CCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 8888887776654432210 0 0 00113457788889999999999999999999999999998752 55
Q ss_pred EEEcCC
Q 048438 157 EVVFPC 162 (239)
Q Consensus 157 ~~~~~~ 162 (239)
+++..+
T Consensus 351 ~~~~~~ 356 (444)
T TIGR03531 351 RLLDTP 356 (444)
T ss_pred EeecCC
Confidence 666443
No 59
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.69 E-value=1.9e-15 Score=130.89 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=122.1
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|++++.++.+|.+.|+++|+++|+++|++++||+||+.+.++.+ .... .+|+++.++|||++++.++|++
T Consensus 146 ~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~-----~~~~-~~di~v~s~sK~~~~~g~~G~l 219 (370)
T TIGR02539 146 PPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVS-----AKEI-GADFIVGSGHKSMAASGPCGVL 219 (370)
T ss_pred CcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCC-----HHHc-CCCEEEeeCcccccCCCCEEEE
Confidence 466788888899999999999999999999999999999998755433 1122 3899999999999877778888
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF- 160 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~- 160 (239)
+.+ ++.+....... ..++........+.. ..+...+.++... .+.+ +..++..+.++++++.|+++ |++++.
T Consensus 220 ~~~-~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~l-~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 294 (370)
T TIGR02539 220 GMS-EEWEDIVLRKS-RYSPVKEVELLGCTSRGAPIVTMMASFPHV-VERV-KRWDEEVKKTRWFVAELEDI-GFIQLGQ 294 (370)
T ss_pred EEC-HHHHhhhcccc-cCCccceeeeecccccccHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHhC-CcEEEcc
Confidence 874 34333222110 011111111111111 1223333333321 1222 23344556678999999987 898753
Q ss_pred -CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438 161 -PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG 231 (239)
Q Consensus 161 -~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~ 231 (239)
+..+|++.|+++.... .....+.....+.+.|.++|...+. .....++|++++
T Consensus 295 ~~s~t~~v~~~~~~~~~---------------~~~~~~~~~~~~~~~L~e~GI~~ir---~~~~~~iRis~~ 348 (370)
T TIGR02539 295 KPKEHDLVKFETPGFHE---------------IAQKHKRRGYFLYEELKKRGIHGIR---SGQTKYFKLSVY 348 (370)
T ss_pred CCCcCceEEEECCchhH---------------HhhhhccccHHHHHHHHhCCCcccc---CCcceEEEEEec
Confidence 5678999988753110 0000011223677788888875121 222458999984
No 60
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.67 E-value=4.5e-15 Score=140.18 Aligned_cols=209 Identities=14% Similarity=0.031 Sum_probs=132.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-----
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD----- 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g----- 79 (239)
..+|++|+.+|..|..+||++|+++||++|+.++|||||..+...... ...+ ++|+++++.||||++|.|
T Consensus 667 ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~----p~~~-GaD~~~~s~HK~f~~P~G~GGPg 741 (993)
T PLN02414 667 LAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTS----PGFI-GADVCHLNLHKTFCIPHGGGGPG 741 (993)
T ss_pred eEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCC----cccc-CCCEEEecCCccCCcCcccCCCC
Confidence 478999999999999999999999999999999999999887643321 1223 499999999999998875
Q ss_pred ceEEEeeCccccccccc----CCCCccCCCCceecCCCCC-------ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438 80 CCCLWATNPEYLKNKAT----ESKPVVDYKDWQITLSRSF-------RSLKLWFVIRNYGMENLRHFLRSHVNMARLFER 148 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~ 148 (239)
+|+++++. .+...... ..............++++. .+...|..++.+|.+|+++..++...+++|+.+
T Consensus 742 ~G~l~~~~-~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~ 820 (993)
T PLN02414 742 MGPIGVKK-HLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAK 820 (993)
T ss_pred eeeEEEch-hhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHH
Confidence 99998864 22211110 0000010000000122221 113446667889999999999999999999999
Q ss_pred HHhCCCCeEEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEE
Q 048438 149 LVSGDKRFEVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAI 226 (239)
Q Consensus 149 ~l~~~~g~~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~l 226 (239)
+|++..++...++ +..+=..+.+.+.. ...+.+ ...+.++|.+.|....+ ..+.....+
T Consensus 821 rL~~~~~~~~~~~~~~~~hEfv~~~~~l~-----------~~~g~~-------~~di~krL~d~Gihapt-~~~pv~~~l 881 (993)
T PLN02414 821 RLEGHYPVLFRGKNGTCAHEFIIDLRPFK-----------NTAGIE-------PEDVAKRLMDYGFHAPT-MSWPVPGTL 881 (993)
T ss_pred HHHhhCCccccCCCCCeeeeEEEeccccc-----------cccCCC-------HHHHHHHHHHcCcEEee-eccccCCEE
Confidence 9987444433333 21222222222110 000001 13566777755554333 224567789
Q ss_pred EEEecCCCCCcC
Q 048438 227 RFATGATLTEER 238 (239)
Q Consensus 227 R~~~~~~~t~~~ 238 (239)
|++++-.++.+|
T Consensus 882 miepTE~~skee 893 (993)
T PLN02414 882 MIEPTESESKAE 893 (993)
T ss_pred EEEeeeeCCHHH
Confidence 999998887654
No 61
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.66 E-value=4.1e-15 Score=132.13 Aligned_cols=163 Identities=15% Similarity=0.120 Sum_probs=108.6
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.|-+|++ +.+.+|...|+++|.++|+++|++++||+||+.|.+..+.... .++.+|++++++||||++|.| |++
T Consensus 183 ~pklIv~--~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~---p~~~~Div~~t~hK~L~GP~G-g~I 256 (475)
T PLN03226 183 RPKLIIA--GASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAAS---PFEYCDVVTTTTHKSLRGPRG-GMI 256 (475)
T ss_pred CCeEEEE--ecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCC---CCCCCeEEEecCcccccCCCc-eEE
Confidence 4554544 3456899999999999999999999999999999886653211 123599999999999999999 777
Q ss_pred EeeCcccccccccCCCCccCC------C-CceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 84 WATNPEYLKNKATESKPVVDY------K-DWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~------~-~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
++++ ............+.++ . ...++++-. ..++++..+++.+-..+++++.++..+++++|++.|.+ .|
T Consensus 257 ~~~~-~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G 334 (475)
T PLN03226 257 FFRK-GPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KG 334 (475)
T ss_pred EEch-hhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 7653 2221110000000010 0 011222211 22345556677765566777888999999999999998 59
Q ss_pred eEEEcC-CCeeEEEEEEcCC
Q 048438 156 FEVVFP-CHFAVVCFRVSPL 174 (239)
Q Consensus 156 ~~~~~~-~~~~iv~f~~~~~ 174 (239)
++++.+ .+.+++.+.+.+.
T Consensus 335 ~~l~~~~t~~hi~lv~~~~~ 354 (475)
T PLN03226 335 YKLVTGGTDNHLVLWDLRPL 354 (475)
T ss_pred CEEEcCCCCCCEEEEEccCC
Confidence 999864 3456777776543
No 62
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.63 E-value=1.9e-14 Score=125.42 Aligned_cols=198 Identities=17% Similarity=0.131 Sum_probs=122.5
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCC-CCcceEEEcCcccCCCcccc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGV-EGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~-~~~Ds~~~~~hK~l~~P~g~ 80 (239)
.+.+|+..+..+.+|.+.|+++|+++|++||+++++|++|+.+.+... ... ...++ ..+|+++.++||+++++. .
T Consensus 170 ~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~-~~~~~~~~~~~~~~di~~~s~sK~l~g~r-~ 247 (393)
T TIGR01822 170 RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPT-GRGSHELCGVMGRVDIITGTLGKALGGAS-G 247 (393)
T ss_pred CceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCC-CCchHHhcCCCCCCeEEEEEChHHhhCCC-c
Confidence 466777777789999999999999999999999999999987655321 110 01111 248999999999988765 4
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
|+++.. ++......... ..+...++... .......+++.+ +..++..++..++.+++.+.|++. |+++.
T Consensus 248 G~~~~~-~~~~~~l~~~~------~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 317 (393)
T TIGR01822 248 GFTTAR-KEVVELLRQRS------RPYLFSNSLPPAVVGASIKVLEML--EASNELRDRLWANTRYFRERMEAA-GFDIK 317 (393)
T ss_pred EEEEeC-HHHHHHHHHhC------ccceecCCCCHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC
Confidence 776653 33332221100 01111122111 112233344433 234556677789999999999875 88765
Q ss_pred cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEEEecCCCC
Q 048438 160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRFATGATLT 235 (239)
Q Consensus 160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~~~~~t 235 (239)
++..+++.+.+++. .....+.+.|.++| +++..... .+...+|++++..+|
T Consensus 318 -~~~~~~~~i~~~~~-----------------------~~~~~l~~~L~~~g-I~v~~~~~~~~~~~~~~iRis~~~~~t 372 (393)
T TIGR01822 318 -PADHPIIPVMLYDA-----------------------VLAQRFARRLLEEG-IYVTGFFYPVVPKGQARIRVQISAAHT 372 (393)
T ss_pred -CCCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCC-eeEeeeCCCCCCCCCceEEEEECCCCC
Confidence 34456776665431 12346777777776 44433221 245679999888877
Q ss_pred CcC
Q 048438 236 EER 238 (239)
Q Consensus 236 ~~~ 238 (239)
++|
T Consensus 373 ~ed 375 (393)
T TIGR01822 373 EEQ 375 (393)
T ss_pred HHH
Confidence 654
No 63
>PRK07179 hypothetical protein; Provisional
Probab=99.61 E-value=1.2e-14 Score=127.49 Aligned_cols=196 Identities=12% Similarity=0.071 Sum_probs=121.8
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccccc--CCC-CCcceEEEcCcccCCCcccce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI--DGV-EGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~-~~~Ds~~~~~hK~l~~P~g~g 81 (239)
|.+|++....+++|.+.|+++|.++|+++|+++|+|++|+.+.... ..+... .++ ..+|+++.++||+++++ .|
T Consensus 182 ~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~-~g~g~~~~~~~~~~vdi~~~S~sK~~g~~--~G 258 (407)
T PRK07179 182 PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGP-QGAGLVAELGLTSRVHFITASLAKAFAGR--AG 258 (407)
T ss_pred CeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCC-CCCchHHhcCCCCCCCEEEeechHhhhcc--Ce
Confidence 5677788888999999999999999999999999999998764321 111111 112 24799999999998754 67
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+++.+ ++......... .......+.. ..++.+..+++.+. ...++.++..++++++.+.|+++ |+++.
T Consensus 259 ~l~~~-~~~~~~~~~~~------~~~~~~~t~~~~~~aa~~aal~~~~--~~~~~~~~l~~~~~~l~~~L~~~-g~~v~- 327 (407)
T PRK07179 259 IITCP-RELAEYVPFVS------YPAIFSSTLLPHEIAGLEATLEVIE--SADDRRARLHANARFLREGLSEL-GYNIR- 327 (407)
T ss_pred EEEeC-HHHHHHHHHhC------cCeeeCCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCCC-
Confidence 77764 33322211000 0001111111 11122334444432 22456677889999999999987 87765
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcE---EEEEEEECCEeEEEEEecCCCCCc
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKA---YMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
...+++.+.++.. .-...+.+.|.++|.. +..+....+...+|++++..+|.+
T Consensus 328 -~~~~i~~l~~~~~-----------------------~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~e 383 (407)
T PRK07179 328 -SESQIIALETGSE-----------------------RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTAS 383 (407)
T ss_pred -CCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHH
Confidence 3457888876431 1123566677777764 122222234679999999888876
Q ss_pred C
Q 048438 238 R 238 (239)
Q Consensus 238 ~ 238 (239)
|
T Consensus 384 d 384 (407)
T PRK07179 384 D 384 (407)
T ss_pred H
Confidence 4
No 64
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.61 E-value=9.1e-15 Score=128.39 Aligned_cols=156 Identities=12% Similarity=0.120 Sum_probs=97.8
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
|-+|+. +++.+|...|+++|.++|++||++++||+||+.|....... ...+..+|++++++|||+.+|.| |+++
T Consensus 169 ~klVi~--~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~---~~~~~~~Di~~~s~~K~l~g~~G-G~v~ 242 (416)
T PRK13034 169 PKLIIA--GFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEH---PNPFPHAHVVTTTTHKTLRGPRG-GMIL 242 (416)
T ss_pred CeEEEE--CCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCC---CCCCCCceEEEEeCcccCCCCCC-eEEE
Confidence 444443 34557888899999999999999999999999987754321 11223599999999999988887 4444
Q ss_pred eeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-C
Q 048438 85 ATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-C 162 (239)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-~ 162 (239)
..++......... .+ . +...+..+ ...++..++..+-..+..++.++.++++++|++.|++. |++++.+ .
T Consensus 243 ~~~~~~~~~~~~~---~~--~--~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~ 314 (416)
T PRK13034 243 TNDEEIAKKINSA---VF--P--GLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGT 314 (416)
T ss_pred ECcHHHHHHHHhh---cC--C--cccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCC
Confidence 4443322111100 00 0 00111111 11222222222211233456688889999999999987 9998753 5
Q ss_pred CeeEEEEEEcCC
Q 048438 163 HFAVVCFRVSPL 174 (239)
Q Consensus 163 ~~~iv~f~~~~~ 174 (239)
+++++.+.+...
T Consensus 315 ~t~i~~v~~~~~ 326 (416)
T PRK13034 315 DNHLLLVDLRPK 326 (416)
T ss_pred CCcEEEEEcCCC
Confidence 788888887653
No 65
>PLN02452 phosphoserine transaminase
Probab=99.61 E-value=4e-15 Score=128.02 Aligned_cols=189 Identities=12% Similarity=0.095 Sum_probs=132.3
Q ss_pred cEEEEEecCCCCccc-ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 5 PLFLCATIGTTAITA-VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~-i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
+-.|.+++..|.+|+ +.|++++.+ +.++||++++.+..+++ ++.+. +|+ +++||++ +|.|.|++
T Consensus 146 ~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pid-----v~~~~-v~~--~saqK~l-GP~Gl~~v 210 (365)
T PLN02452 146 AKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVD-----VSKYG-VIY--AGAQKNV-GPSGVTIV 210 (365)
T ss_pred CcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccC-----HHHcC-EEE--Eeccccc-CCCCeEEE
Confidence 457889999999999 699988863 89999999999999887 44432 544 6999988 59999999
Q ss_pred EeeCcccccccccCCCCccCCCCceecC------CCC--CChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITL------SRS--FRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
++++ +.+.........+.+ |.... .++ +..+.+..+++.+-.+ |++++.+++.++++++++.|++.+
T Consensus 211 ~vr~-~~l~~~~~~~~~~~~---~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~ 286 (365)
T PLN02452 211 IIRK-DLIGNARPITPGMLD---YKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESN 286 (365)
T ss_pred EEcH-HHHhhcccCCCchhh---HHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9965 344332211112222 22111 122 2234555667777655 799999999999999999999887
Q ss_pred CeEEE-cCC---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEe
Q 048438 155 RFEVV-FPC---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230 (239)
Q Consensus 155 g~~~~-~~~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~ 230 (239)
||-.. .++ ...+|+|++++. ++..++.+.+.++|.+.+.....-|. +|+++
T Consensus 287 G~y~~~~~~~~rs~~~vsF~~~~~-----------------------~~~~~f~~~~~~~g~~~~~G~r~~gg--~R~s~ 341 (365)
T PLN02452 287 GFYVCPVEKSVRSLMNVPFTLGGS-----------------------ELEAEFVKEAAKAGMVQLKGHRSVGG--MRASI 341 (365)
T ss_pred CcccCCCChHHhCCeEEEEEcCCc-----------------------hhHHHHHHHHHHCCCcccCCccccCc--eEEEC
Confidence 87111 111 234899998763 24558888999999998876655454 99998
Q ss_pred cCCCCCc
Q 048438 231 GATLTEE 237 (239)
Q Consensus 231 ~~~~t~~ 237 (239)
.|-.+.+
T Consensus 342 yna~~~~ 348 (365)
T PLN02452 342 YNAMPLA 348 (365)
T ss_pred cCCCCHH
Confidence 8766543
No 66
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.61 E-value=1.8e-14 Score=123.81 Aligned_cols=195 Identities=18% Similarity=0.162 Sum_probs=134.2
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccC--CC--CCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GV--EGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~--~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|+.-..=++.|.+-||++|+++|++|++|+.||-||+.|.+ .+..++..+ ++ ..+|+++.++.|.|++
T Consensus 171 ~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~-G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs--- 246 (388)
T COG0156 171 RRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVL-GPNGRGLAEHFGLEPEEVDIIVGTLGKALGS--- 246 (388)
T ss_pred CceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEcccccccc-CCCCccHHHHhCCCCccceEEEEEchhhhcc---
Confidence 456676666679999999999999999999999999999999976 444444322 22 2469999999999885
Q ss_pred ceEEEeeCc---ccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 80 CCCLWATNP---EYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 80 ~g~l~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
.|.++..+. +|+....+ .+-+..+-+ ..+.+...+++.+- ...++.++..+++.++++.++.. +
T Consensus 247 ~Gg~v~g~~~~~d~L~~~ar---------~~ifStalpP~~aaa~~~al~~l~--~~~~~r~~L~~~~~~~~~~~~~~-~ 314 (388)
T COG0156 247 SGGYIAGSAALIDYLRNRAR---------PFIFSTALPPAVAAAALAALRILE--EGPERRERLQELAAFFRSLLKAL-G 314 (388)
T ss_pred cCceeeCcHHHHHHHHHhCC---------ceeccCCCCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhc-C
Confidence 455555443 34433321 122222222 23334445566543 22456667778899998666653 6
Q ss_pred eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcE---EEEEEEECCEeEEEEEecC
Q 048438 156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKA---YMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~~~~~~~g~~~lR~~~~~ 232 (239)
+.+ .+..++|+.+.+.+ ++...++.+.|.++|.. +..+|+.+|...||++++.
T Consensus 315 ~~~-~~s~s~I~pv~~gd-----------------------~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta 370 (388)
T COG0156 315 LVL-LPSESPIIPVILGD-----------------------EERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTA 370 (388)
T ss_pred Ccc-CCCCCCeeeeEeCC-----------------------HHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecC
Confidence 665 46678999999876 34455777788878554 4455777899999999999
Q ss_pred CCCCcC
Q 048438 233 TLTEER 238 (239)
Q Consensus 233 ~~t~~~ 238 (239)
.+|++|
T Consensus 371 ~ht~~~ 376 (388)
T COG0156 371 AHTEED 376 (388)
T ss_pred CCCHHH
Confidence 998764
No 67
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=99.60 E-value=1.5e-14 Score=117.65 Aligned_cols=203 Identities=13% Similarity=0.083 Sum_probs=134.1
Q ss_pred CccEEEEEecCCCCcccccC-hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438 3 LIPLFLCATIGTTAITAVDP-LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~p-l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
+.|-+|.+++|.|.||.++| ++.+.++||+|++.|+||+.-+.|..++. .+.+ ++|+.....+|.|++|.|.+
T Consensus 141 h~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~-----mDew-gVDvaytgSQKaL~aP~GLs 214 (385)
T KOG2862|consen 141 HKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFE-----MDEW-GVDVAYTGSQKALGAPAGLS 214 (385)
T ss_pred cCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccce-----ehhh-cccEEEecchhhcCCCCCcc
Confidence 57899999999999999999 77789999999999999998888877764 3444 49999999999999999999
Q ss_pred EEEeeCccccccccc--C--CCCccCCC----CceecC-CCCC---Ch----HHHHHHHHHhCHHHHHHHHHHHHHHHHH
Q 048438 82 CLWATNPEYLKNKAT--E--SKPVVDYK----DWQITL-SRSF---RS----LKLWFVIRNYGMENLRHFLRSHVNMARL 145 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~--~--~~~~~~~~----~~~~~~-~~~~---~~----~~~~~~l~~~g~~g~~~~~~~~~~la~~ 145 (239)
++.+.+. .+..... . -..++|.. .|...+ .|.+ .+ ..+-.+|..+-.+|++++++++.+++++
T Consensus 215 iisfS~k-a~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~ 293 (385)
T KOG2862|consen 215 IISFSDK-ALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKW 293 (385)
T ss_pred eeecCHH-HHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9776432 1111110 0 11233321 111111 1222 11 3445677778889999999999999999
Q ss_pred HHHHHhCCCCeEEEcC---CCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE-E
Q 048438 146 FERLVSGDKRFEVVFP---CHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV-L 220 (239)
Q Consensus 146 l~~~l~~~~g~~~~~~---~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~ 220 (239)
++..|++. |+++... ..++ +..+.++. +. | +. .+.+.+..++.+.+..-- .
T Consensus 294 l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~-gv---------------D---w~----dVv~~~~~~~~vei~gglg~ 349 (385)
T KOG2862|consen 294 LKLSLEAL-GLQLFVVDEELRLPTVTTVKVPY-GV---------------D---WK----DVVAYAMSHYVVEIGGGLGP 349 (385)
T ss_pred HHHHHHHh-CccceecChhhccCcceeeecCC-CC---------------C---HH----HHHHHHHHhcCEEeccccCC
Confidence 99999986 8886642 2233 33344433 21 1 12 445566666666554311 1
Q ss_pred CCEeEEEEEecCCCCC
Q 048438 221 GGIYAIRFATGATLTE 236 (239)
Q Consensus 221 ~g~~~lR~~~~~~~t~ 236 (239)
-...++|+.+..-|..
T Consensus 350 ~~gKv~RIGl~gcna~ 365 (385)
T KOG2862|consen 350 TVGKVFRIGLLGCNAN 365 (385)
T ss_pred CcccEEEEEEeeccCC
Confidence 1245889887655543
No 68
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.59 E-value=1.8e-14 Score=127.83 Aligned_cols=198 Identities=13% Similarity=0.071 Sum_probs=120.8
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEE--ecccccccccCcccccccCCCCCcceEEEcCccc-----CCCc
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHV--DAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKW-----FFAT 77 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhv--D~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~-----l~~P 77 (239)
+.+|++++. |.+|.++|+++|+++||++|+|++| |+. +.+.+..+ ..+ ++|++++++||| +++|
T Consensus 205 t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~~------~~~-~~D~~~~s~~k~~~~~~~~Gp 275 (447)
T PRK00451 205 TAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKPP------GEY-GADIVVGEGQPLGIPLSFGGP 275 (447)
T ss_pred eEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCCc------ccC-CCCEEEECCCcCCCCCCCCCC
Confidence 456667765 8899999999999999999999999 644 33333222 112 499999999997 5556
Q ss_pred ccceEEEeeCcccccccccC---C-----C---CccCCCC----ceecCCCC-CC------hHHHHHHHHHhCHHHHHHH
Q 048438 78 LDCCCLWATNPEYLKNKATE---S-----K---PVVDYKD----WQITLSRS-FR------SLKLWFVIRNYGMENLRHF 135 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~---~-----~---~~~~~~~----~~~~~~~~-~~------~~~~~~~l~~~g~~g~~~~ 135 (239)
++|+++++. .++...... . + ...+... .....+.. .. ++..+.+++.++.++++++
T Consensus 276 -g~G~l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~ 353 (447)
T PRK00451 276 -YLGFFATRK-KLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLREL 353 (447)
T ss_pred -CchHHHhhH-HHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHH
Confidence 799988753 333221100 0 0 0000000 00000111 11 1233334667788999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE-
Q 048438 136 LRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY- 214 (239)
Q Consensus 136 ~~~~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~- 214 (239)
.++..++++++.+.|++++|++++..+..+.+++.++.. ...+.++|.++|.+.
T Consensus 354 ~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~~~-------------------------~~~~~~~L~~~gi~~~ 408 (447)
T PRK00451 354 AEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLPKP-------------------------AEEVNEALLEKGILGG 408 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecCCC-------------------------HHHHHHHHHhcCCCCC
Confidence 999999999999999998899887433344455554211 125666676666541
Q ss_pred --EEEEEECCEeEEEEEecCCCCCcC
Q 048438 215 --MTNVVLGGIYAIRFATGATLTEER 238 (239)
Q Consensus 215 --~~~~~~~g~~~lR~~~~~~~t~~~ 238 (239)
.......-..++|++++..+|.+|
T Consensus 409 ~~~~~~~~~~~~~~rvs~~~~~t~e~ 434 (447)
T PRK00451 409 YDLGRYYPELGNHLLVCVTEKRTKED 434 (447)
T ss_pred cccccccCCcCCEEEEecCCCCCHHH
Confidence 111111112589999988887654
No 69
>PLN02271 serine hydroxymethyltransferase
Probab=99.59 E-value=5.9e-14 Score=124.38 Aligned_cols=163 Identities=9% Similarity=0.045 Sum_probs=111.8
Q ss_pred CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 82 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~ 82 (239)
.+|-+|++.+.... ...|+++|+++|+++|++++||+||.+|.+....+.. .+..+|+++++.||||.+|.| |+
T Consensus 297 ~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~s---P~~~aDvvt~TTHKtLrGPrG-G~ 370 (586)
T PLN02271 297 FRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVN---PFDYCDIVTSTTHKSLRGPRG-GI 370 (586)
T ss_pred cCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCC---CCcCCcEEEeCCcccCCCCCc-eE
Confidence 46777777554444 7889999999999999999999999999887654321 123599999999999999999 77
Q ss_pred EEeeCccccc---ccccCCCC---ccCC--------CCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 048438 83 LWATNPEYLK---NKATESKP---VVDY--------KDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFE 147 (239)
Q Consensus 83 l~~~~~~~l~---~~~~~~~~---~~~~--------~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~ 147 (239)
+++++. +.. .....++. ..++ .+ .+++|.. ...+++..+++......++++.++..++++.|.
T Consensus 371 I~~r~~-~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfP-glqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA 448 (586)
T PLN02271 371 IFYRKG-PKLRKQGMLLSHGDDNSHYDFEEKINFAVFP-SLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALA 448 (586)
T ss_pred EEeccc-ccccccCCccccccccccHHHHHHhhcccCC-ccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 777542 111 00000000 0000 11 3333433 224555666776655677889999999999999
Q ss_pred HHHhCCCCeEEEcC-CCeeEEEEEEcCC
Q 048438 148 RLVSGDKRFEVVFP-CHFAVVCFRVSPL 174 (239)
Q Consensus 148 ~~l~~~~g~~~~~~-~~~~iv~f~~~~~ 174 (239)
+.|.+. |++++.. .+..+|.+.+.+.
T Consensus 449 ~~L~~~-G~~vv~ggTdnHlvLvDl~~~ 475 (586)
T PLN02271 449 SALLRR-KCRLVTGGTDNHLLLWDLTTL 475 (586)
T ss_pred HHHHHC-CCeEeeCCCCcceeeecCccc
Confidence 999886 9998863 4567777777553
No 70
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.58 E-value=5.3e-14 Score=133.35 Aligned_cols=195 Identities=17% Similarity=0.130 Sum_probs=128.2
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-----c
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-----C 80 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-----~ 80 (239)
++.++++-++.+|.+.|+++|+++||++|++++||+.+.+..+..+ ...+ +||+++.++|||+ +|.| +
T Consensus 207 ~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~-----pge~-GaDi~vgs~qkfg-~P~g~GGP~a 279 (954)
T PRK05367 207 VFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTP-----PGEM-GADIAVGSAQRFG-VPMGFGGPHA 279 (954)
T ss_pred EEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCC-----hhhc-CCCEEEeeCcccC-CCCCCCCCCE
Confidence 4556677789999999999999999999999999997743333232 2233 4999999999994 4444 9
Q ss_pred eEEEeeCcccccccccC-CCCccC--C-CCcee-----cCC-CCC-------ChHHHH-----HHHHHhCHHHHHHHHHH
Q 048438 81 CCLWATNPEYLKNKATE-SKPVVD--Y-KDWQI-----TLS-RSF-------RSLKLW-----FVIRNYGMENLRHFLRS 138 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~-~~~~~~--~-~~~~~-----~~~-~~~-------~~~~~~-----~~l~~~g~~g~~~~~~~ 138 (239)
|+|++++ .+....... -+...+ - ..+.+ +.. ||- ....+. ..+..+|.+|++++.++
T Consensus 280 Gflavr~-~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~ 358 (954)
T PRK05367 280 AYFAVRD-AYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARR 358 (954)
T ss_pred EEEEECH-HHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999975 333222110 000000 0 00111 111 221 111122 12466899999999999
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE
Q 048438 139 HVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV 218 (239)
Q Consensus 139 ~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 218 (239)
.+.++.++.++|++ .|+++..+...+++.|+++. . ...+.++|.++|...-
T Consensus 359 ~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~~-~------------------------~~~i~~~l~~~gi~~~--- 409 (954)
T PRK05367 359 VHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVGG-D------------------------AAAVLARALAAGINLR--- 409 (954)
T ss_pred HHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCCC-C------------------------HHHHHHHHHHCCceec---
Confidence 99999999999987 69998877777888888642 1 1256777777776641
Q ss_pred EECCEeEEEEEecCCCCCcC
Q 048438 219 VLGGIYAIRFATGATLTEER 238 (239)
Q Consensus 219 ~~~g~~~lR~~~~~~~t~~~ 238 (239)
......+|+|++-.+|.+|
T Consensus 410 -~~~~~~l~is~~e~~t~~d 428 (954)
T PRK05367 410 -RVDDDHVGISLDETTTRED 428 (954)
T ss_pred -cccCCEEEEEecccCCHHH
Confidence 1123469999998888764
No 71
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.58 E-value=5.2e-14 Score=133.10 Aligned_cols=193 Identities=15% Similarity=0.053 Sum_probs=130.6
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-----ce
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-----CC 81 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-----~g 81 (239)
+.++++-.+.+|.+.|+++|+++||++|++++| ||+..+...+.. ...+ +||+++.++|||+ +|.| +|
T Consensus 236 ~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~----pge~-GADi~vgsgqKwg-~P~G~GGP~aG 308 (993)
T PLN02414 236 CGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKP----PGEW-GADIVVGSAQRFG-VPMGYGGPHAA 308 (993)
T ss_pred EEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCC----Hhhc-cCcEEEECCCccc-cCCCCCCCCee
Confidence 344577778899999999999999999999999 998887776642 2233 4999999999997 4555 89
Q ss_pred EEEeeCccccccccc-CCCCccCC---CCce-----ecCCCCC--------ChHHHHHH-----HHHhCHHHHHHHHHHH
Q 048438 82 CLWATNPEYLKNKAT-ESKPVVDY---KDWQ-----ITLSRSF--------RSLKLWFV-----IRNYGMENLRHFLRSH 139 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~-~~~~~~~~---~~~~-----~~~~~~~--------~~~~~~~~-----l~~~g~~g~~~~~~~~ 139 (239)
+|++++ ++...... .-+...+. ..+. -+..+|+ ...++++. +..+|..|++++.++.
T Consensus 309 flavr~-~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri 387 (993)
T PLN02414 309 FLATSQ-EYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRV 387 (993)
T ss_pred EEEECH-HHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999975 33321110 00001110 0010 0111121 11233333 3456788999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE
Q 048438 140 VNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV 219 (239)
Q Consensus 140 ~~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 219 (239)
++++.+++++|.+ .|+++..++..++++|+++.. ..+.++|.++|...-.
T Consensus 388 ~~la~~l~~~L~~-~G~~~~~~~~f~~vt~~~~~~--------------------------~~v~~~L~~~gI~l~~--- 437 (993)
T PLN02414 388 HGLAGVFAAGLKK-LGFQVQSLPFFDTVKVKCSDA--------------------------DAIADAAAKVGINLRV--- 437 (993)
T ss_pred HHHHHHHHHHHhh-cCCccCCCCCcCeEEEecCCH--------------------------HHHHHHHHHCCCeeEE---
Confidence 9999999999987 589998888889999997421 2566777777763221
Q ss_pred ECCEeEEEEEecCCCCCcC
Q 048438 220 LGGIYAIRFATGATLTEER 238 (239)
Q Consensus 220 ~~g~~~lR~~~~~~~t~~~ 238 (239)
. +...+|+|++-.+|.+|
T Consensus 438 ~-~~~~lrvs~~e~~T~ed 455 (993)
T PLN02414 438 V-DANTVTVSFDETTTLED 455 (993)
T ss_pred e-cCCeEEEEeeccCCHHH
Confidence 1 12359999999998765
No 72
>PLN02721 threonine aldolase
Probab=99.58 E-value=5.6e-14 Score=120.62 Aligned_cols=196 Identities=15% Similarity=0.131 Sum_probs=114.3
Q ss_pred ccEEEEEecC-CCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIG-TTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~g-tt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|+.+.. ++.+|.+.| +++|.++|+++|+++|+|+||..+......... ......+|++++++|||+++|.|
T Consensus 137 ~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~-~~~~~~~d~~~~s~sK~l~~~~G 215 (353)
T PLN02721 137 TTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPV-HRLVKAADSVSVCLSKGLGAPVG 215 (353)
T ss_pred cceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCH-HHHhhhCCEEEEecccccCCcee
Confidence 4556666554 455788655 789999999999999999998654321111110 11112589999999999988755
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV- 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~- 158 (239)
.+++.+++++...... .. ...++.+........++. +.+...+.+++..++++++.+.|++++++++
T Consensus 216 --~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 283 (353)
T PLN02721 216 --SVIVGSKSFIRKAKRL----RK----TLGGGMRQVGVLAAAALV--ALQENVPKLEDDHKKAKLLAEGLNQIKGLRVN 283 (353)
T ss_pred --eEEecCHHHHHhHHHH----HH----hcCCCeehhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEe
Confidence 3333455544332110 00 000111111111111111 1122223445556788999999999888876
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
+.++..+++.|+++... ......+.++|.++|...... +..++|++++..++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~L~~~gi~v~~~----~~~~lR~~~~~~~~~~ 337 (353)
T PLN02721 284 VAAVETNIVYFDITDGS---------------------RITAEKLCKSLEEHGVLLMPG----NSSRIRVVTHHQISDS 337 (353)
T ss_pred cCCccceEEEEEccCCc---------------------cccHHHHHHHHHhCCcEEecC----CCceEEEEecCcCCHH
Confidence 55677888888886420 001236777887677665532 4568999987665544
No 73
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.57 E-value=9e-14 Score=120.43 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=114.1
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccccc--CCCCCcceEEEcCcccCCCcccce
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI--DGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
...+|++++.++++|.+.|+++|.++|+++|+++|||+||+.|.+..+- +... .+....|.+..+++|.+ +|.|+|
T Consensus 143 ~~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g-~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~ 220 (370)
T PRK05937 143 GRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDG-KGFCHSLGYENFYAVLVTYSKAL-GSMGAA 220 (370)
T ss_pred CcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCC-CchHHhhCCCCCcEEEEechhhh-hcCceE
Confidence 3456777889999999999999999999999999999999988765431 1100 12222345677888985 578888
Q ss_pred EEEeeCc-ccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 82 CLWATNP-EYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 82 ~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
+++.++. ..+.... ..+.+..+.. ...+++..+++.+..++ +...++..++.+++.+.|... +
T Consensus 221 vl~~~~~~~~~~~~~---------~~~~~s~~~~~~~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~-~---- 285 (370)
T PRK05937 221 LLSSSEVKQDLMLNS---------PPLRYSTGLPPHLLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSA-A---- 285 (370)
T ss_pred EEcCHHHHHHHHHhC---------CCCeecCCCCHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCC-C----
Confidence 7765321 1111000 0112222222 22333444555543333 344567778888988887542 1
Q ss_pred cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCcC
Q 048438 160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEER 238 (239)
Q Consensus 160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~~ 238 (239)
+ ..++.|.+++. + ...+.+.|.++|. ++.........++|++++.++|.+|
T Consensus 286 -~--~~~~~i~~~~~----------------------~--~~~~~~~L~~~gi-~v~~~~~~~~~~iRis~~~~~t~ed 336 (370)
T PRK05937 286 -P--GCVQPIFLPGI----------------------S--EQELYSKLVETGI-RVGVVCFPTGPFLRVNLHAFNTEDE 336 (370)
T ss_pred -C--CCEEEEEeCCh----------------------h--HHHHHHHHHHCCe-eEEeeCCCCCCEEEEEcCCCCCHHH
Confidence 1 11234555431 1 1356667766765 4544333345689999999988775
No 74
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.57 E-value=1.5e-14 Score=123.36 Aligned_cols=195 Identities=19% Similarity=0.102 Sum_probs=113.9
Q ss_pred ccEEEEEecCCCCccc---ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 4 IPLFLCATIGTTAITA---VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~---i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
.|-+|+++..++ +|. .+++++|+++|+++|+++|||+||..+....... ........+|+++.++|||++.|.|+
T Consensus 127 ~~~~v~l~~p~n-~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~-~~~~~~~~~d~~~~s~sK~~~~~~g~ 204 (338)
T cd06502 127 PPSLVSLENTTE-GGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV-ALKTYKSGVDSVSFCLSKGGGAPVGA 204 (338)
T ss_pred cceEEEEEeecC-CccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC-CHHHHHhcCCEEEEeccccCCCccce
Confidence 456666666665 464 5678889999999999999999985432211100 00000124899999999999887543
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+++.+++.+....... ..+ ..+.+..++..+.++..+...++.++.++..++++++.+.|++. ++. +.
T Consensus 205 --~~~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~ 272 (338)
T cd06502 205 --VVVGNRDFIARARRRR------KQA--GGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL-GGL-ES 272 (338)
T ss_pred --EEECCHHHHHHHHHHH------HHh--CCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-CCC-cc
Confidence 4433444433221100 000 00111122333334444444456677788889999999999987 554 34
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH---hcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN---ASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
++..|++.++++.. +.....+.+++. ++|..+.. . +..++|++++..+|++
T Consensus 273 ~~~~~~~~v~~~~~----------------------~~~~~~l~~~l~~~~~~gi~~~~---~-~~~~lRi~~~~~~~~~ 326 (338)
T cd06502 273 EVQTNIVLLDPVEA----------------------NAVFVELSKEAIERRGEGVLFYA---W-GEGGVRFVTHWDTTEE 326 (338)
T ss_pred cccCCeEEEecCCc----------------------cHHHHHHHHHHHHhhhCCEEEEe---c-CCCeEEEEeecCCCHH
Confidence 66789998887532 122223333333 45554332 2 2278999998777765
Q ss_pred C
Q 048438 238 R 238 (239)
Q Consensus 238 ~ 238 (239)
|
T Consensus 327 ~ 327 (338)
T cd06502 327 D 327 (338)
T ss_pred H
Confidence 3
No 75
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.57 E-value=5.1e-14 Score=120.10 Aligned_cols=197 Identities=16% Similarity=0.044 Sum_probs=122.6
Q ss_pred ccEEEEEecCCCCcccccChhHHH---HHHHHhCCEEEEecccccccccCcccc--cccCCCCCcceEEEcCcccCC-Cc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLC---DVAKQFGIWVHVDAAYAGSACIFPEFR--HFIDGVEGADSFSLNAHKWFF-AT 77 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~---~i~~~~gi~lhvD~A~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~hK~l~-~P 77 (239)
.|-+|++++.++.+|.+.|++++. ++|+++|++++||+||+++........ .... ...+|+++.++||+++ .+
T Consensus 132 ~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~K~~~~~g 210 (350)
T cd00609 132 KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLD-AYERVIVLRSFSKTFGLPG 210 (350)
T ss_pred cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcC-ccCcEEEEeecccccCCcc
Confidence 466888888999999999866665 899999999999999987654322110 0011 1248999999999998 45
Q ss_pred ccceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
.++|+++++++.+........ .+. ..+.. .....+..+++... +++++..++..++++++.+.|.+.+..
T Consensus 211 ~~~G~i~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~ 281 (350)
T cd00609 211 LRIGYLIAPPEELLERLKKLL-------PYT-TSGPSTLSQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPL 281 (350)
T ss_pred cceEEEecCHHHHHHHHHHHH-------Hhc-ccCCChHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 668888875534443332110 000 01111 12233333344322 567777888889999999999987554
Q ss_pred EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecCC
Q 048438 157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGAT 233 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~ 233 (239)
.+..+...+.+.+.+++.. ..+.+.+.|.+.|.......... +..++|++++.+
T Consensus 282 ~~~~~~~g~~~~~~~~~~~-----------------------~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~ 337 (350)
T cd00609 282 VVVKPSGGFFLWLDLPEGD-----------------------DEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP 337 (350)
T ss_pred cccCCCccEEEEEecCCCC-----------------------hHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC
Confidence 4333445566777765421 01134445555565544433333 677999999887
No 76
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.56 E-value=7.7e-14 Score=130.05 Aligned_cols=203 Identities=15% Similarity=0.075 Sum_probs=126.4
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
..+|++++.++..+..+|+++|+++||++|++++|||||..+...++.. ..+ ++|++++++|||+++|.|.|..+
T Consensus 642 laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~P----g~~-GADi~~~s~HKtf~~P~G~GGP~ 716 (954)
T PRK12566 642 LSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARP----ADI-GADVSHMNLHKTFCIPHGGGGPG 716 (954)
T ss_pred EEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCCh----hhc-CCCEEEecCCcccCcCccCCCCc
Confidence 4567788888877778889999999999999999999998766655421 123 59999999999999999999988
Q ss_pred eeC---cccccccccCCCCccCC-CCceecCCCC---CC----hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438 85 ATN---PEYLKNKATESKPVVDY-KDWQITLSRS---FR----SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 85 ~~~---~~~l~~~~~~~~~~~~~-~~~~~~~~~~---~~----~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
++. .+.+.+.....+. .+. ....-++++. +. +...|..++.+|.+ +.+.......+++|+.++|++.
T Consensus 717 vG~iav~~~L~pfLp~~P~-~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~ 794 (954)
T PRK12566 717 MGPIGVRAHLAPFVANHPV-VPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGA 794 (954)
T ss_pred cchhhhhhhhhhhccCCCC-cCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhh
Confidence 853 1111111111110 010 0000011121 11 24455667888988 7776677789999999999873
Q ss_pred CCeEEEcCC-------CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEE
Q 048438 154 KRFEVVFPC-------HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAI 226 (239)
Q Consensus 154 ~g~~~~~~~-------~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~l 226 (239)
+++...+ +..+.++.++... ..+ ...+.++|.+.|..... ..+.+...+
T Consensus 795 --~~v~~~~~~~~~~hEfii~~~~l~~~~--------------g~~-------~~dvakRL~d~Gihapt-~~fPv~~~L 850 (954)
T PRK12566 795 --FPVLYRGRNERVAHECILDLRPLKAQT--------------GIS-------EEDVAKRLMDYGFHAPT-MSFPVPGTL 850 (954)
T ss_pred --CCCCcCCCCCCeeeEEEEEcccccccc--------------CCC-------HHHHHHHHHHCCcEEeE-EeeccCCEE
Confidence 4433321 1233333333210 001 12466677755554222 345567789
Q ss_pred EEEecCCCCCcC
Q 048438 227 RFATGATLTEER 238 (239)
Q Consensus 227 R~~~~~~~t~~~ 238 (239)
|++++-.++.+|
T Consensus 851 mIepTE~eskeE 862 (954)
T PRK12566 851 MVEPTESESKAE 862 (954)
T ss_pred EEEeeeeCCHHH
Confidence 999998887664
No 77
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.54 E-value=2.2e-13 Score=116.73 Aligned_cols=200 Identities=14% Similarity=0.007 Sum_probs=120.5
Q ss_pred CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc--cccCCCCCcceEEEcCcccCCCcccc
Q 048438 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR--HFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
.++.+|+++...+.+|.+.|+++|+++|+++|+++++|++|+.+.+...... .......++|+++.++||+++. .|
T Consensus 131 ~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g- 208 (349)
T cd06454 131 YGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VG- 208 (349)
T ss_pred CCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cC-
Confidence 4577888888889999999999999999999999999999986655311000 0011112589999999999875 33
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
|+++. ++.++....... ..+....+.. ...+.+..+++.+.. .+++.++..++++++.+.|.+. |++++
T Consensus 209 G~i~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 278 (349)
T cd06454 209 GYIAG-SKELIDYLRSYA------RGFIFSTSLPPAVAAAALAALEVLQG--GPERRERLQENVRYLRRGLKEL-GFPVG 278 (349)
T ss_pred CEEEC-CHHHHHHHHHhc------hhhhccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-CCccc
Confidence 55554 344432221100 0011111111 112233344544322 3556777889999999999886 78776
Q ss_pred cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecCCCCC
Q 048438 160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGATLTE 236 (239)
Q Consensus 160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~~~t~ 236 (239)
.++...+.++.+++. ....++.+.|.++|........ ..+..++|++++.++|.
T Consensus 279 ~~~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~ 335 (349)
T cd06454 279 GSPSHIIPPLIGDDP-----------------------AKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTK 335 (349)
T ss_pred CCCCCcEEEEeCCCh-----------------------HHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCH
Confidence 554444444543321 1123677777777555433211 12346899998877765
Q ss_pred c
Q 048438 237 E 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 336 ~ 336 (349)
T cd06454 336 E 336 (349)
T ss_pred H
Confidence 4
No 78
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.53 E-value=3.3e-13 Score=118.13 Aligned_cols=198 Identities=15% Similarity=0.164 Sum_probs=120.9
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC-CCcceEEEcCcccCCCcccc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV-EGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~-~~~Ds~~~~~hK~l~~P~g~ 80 (239)
.+.+|++....+++|.+.|+++|.++|++||++++||+||+.|.+ .+..... ..++ ..+|.++.++.|.++.+.
T Consensus 177 ~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~-g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-- 253 (402)
T TIGR01821 177 RPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLY-GPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG-- 253 (402)
T ss_pred CCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCccccccc-CCCCCccchhccCCCCCeEEEEechhhhccCC--
Confidence 456788888899999999999999999999999999999986643 1211111 1121 247889899999987643
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
|++.. +++......... ..+.+..+.. ..+.....+++.+... ....++..++++++.+.|++. |++++
T Consensus 254 G~i~~-~~~~~~~l~~~~------~~~~~t~~~~~~~~aaa~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~ 323 (402)
T TIGR01821 254 GYIAA-SRKLIDAIRSYA------PGFIFTTSLPPAIAAGATASIRHLKES--QDLRRAHQENVKRLKNLLEAL-GIPVI 323 (402)
T ss_pred ceeec-CHHHHHHHHHhC------cCceecCcCCHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcC
Confidence 44443 333322211000 0011111111 1123333445443222 334455568899999999886 77765
Q ss_pred cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE----EECCEeEEEEEecCCCC
Q 048438 160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV----VLGGIYAIRFATGATLT 235 (239)
Q Consensus 160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~~~g~~~lR~~~~~~~t 235 (239)
++..+++.+.++. ......+.++|.++..+++.+. ...|..++|++++..+|
T Consensus 324 -~~~~~i~~i~~~~-----------------------~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t 379 (402)
T TIGR01821 324 -PNPSHIVPVIIGD-----------------------AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHT 379 (402)
T ss_pred -CCCCCEEEEEeCC-----------------------HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCC
Confidence 4467788776542 1123467777765544545442 23455789999998888
Q ss_pred CcC
Q 048438 236 EER 238 (239)
Q Consensus 236 ~~~ 238 (239)
.+|
T Consensus 380 ~ed 382 (402)
T TIGR01821 380 DKM 382 (402)
T ss_pred HHH
Confidence 764
No 79
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.53 E-value=6.8e-14 Score=120.59 Aligned_cols=207 Identities=14% Similarity=0.077 Sum_probs=130.2
Q ss_pred EEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeC
Q 048438 8 LCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATN 87 (239)
Q Consensus 8 vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~ 87 (239)
|+++|..|.||+.+|+++++..+ +++.++||+.-+.+..+++ .+ .+|++..+++|+|++|+|.+++.+++
T Consensus 131 v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~-----~d---~iDv~~tgsQK~L~~ppGls~v~vs~ 200 (374)
T TIGR01365 131 VVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLD-----YH---KLDVVTFSWQKVLGGEGAHGMLILSP 200 (374)
T ss_pred EEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCC-----hh---HCcEEEEechhccCCCCceEEEEECH
Confidence 67999999999999998776432 5899999999988888886 44 39999999999999999999999964
Q ss_pred ccccccccc-C----CCCccCCCCc---e---ecCCCCCCh--HHHHH---HHHHhCHH-HHHHHHHHHHHHHHHHHHHH
Q 048438 88 PEYLKNKAT-E----SKPVVDYKDW---Q---ITLSRSFRS--LKLWF---VIRNYGME-NLRHFLRSHVNMARLFERLV 150 (239)
Q Consensus 88 ~~~l~~~~~-~----~~~~~~~~~~---~---~~~~~~~~~--~~~~~---~l~~~g~~-g~~~~~~~~~~la~~l~~~l 150 (239)
. .+..... . ...+.++... . .....++.. ..++. +++.+-.+ |++++.+++.++++.+++.+
T Consensus 201 ~-Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l 279 (374)
T TIGR01365 201 R-AVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFV 279 (374)
T ss_pred H-HHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 3 2221110 0 0011111000 0 011223221 22332 34444454 79999999999999999999
Q ss_pred hCCCCeEEEcC-C--Cee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEE
Q 048438 151 SGDKRFEVVFP-C--HFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAI 226 (239)
Q Consensus 151 ~~~~g~~~~~~-~--~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~l 226 (239)
++...++++.. + +++ ++++.+++++... .+.+....+...+++.|.++|..+...........+
T Consensus 280 ~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~f 347 (374)
T TIGR01365 280 AKNNWIHFLAETPEIRSNTSVCLKVVDPAIDA------------LDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGL 347 (374)
T ss_pred HHCCCcccCCCChhhcCCCeEEEEeCCccccc------------cccchhhHHHHHHHHHHHHCCEEEeccccccCCCce
Confidence 99733777753 1 333 5667775432100 000001222346778888887766644433223689
Q ss_pred EEEecCCCCCc
Q 048438 227 RFATGATLTEE 237 (239)
Q Consensus 227 R~~~~~~~t~~ 237 (239)
|+..+...+.+
T Consensus 348 RIg~~G~i~~~ 358 (374)
T TIGR01365 348 RIWCGATVEKS 358 (374)
T ss_pred EEecCCcCCHH
Confidence 99987766543
No 80
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.51 E-value=3.5e-13 Score=115.60 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=93.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEc--CcccCCCcccceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLN--AHKWFFATLDCCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~--~hK~l~~P~g~g~ 82 (239)
+-+|+.+ +.+|...|+++|.++|+++|+++++|+||+.+....... ... ..|+.+++ .|||+.++. .|+
T Consensus 107 ~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~---~~~--~~d~~~~S~~~~K~~~~~~-gg~ 177 (352)
T cd00616 107 TKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRK---VGT--FGDAGAFSFHPTKNLTTGE-GGA 177 (352)
T ss_pred CeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEE---ccc--CcceeEEcCCCCCCCcccC-ceE
Confidence 3455554 368999999999999999999999999999876533210 111 14666666 559985554 355
Q ss_pred EEeeCccccccccc--CCCCccC---CCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 83 LWATNPEYLKNKAT--ESKPVVD---YKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 83 l~~~~~~~l~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
++.++++.+..... ..+.... +.........+...+.....+ ...+.++++.++..++++++.+.|++++|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~--~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~ 255 (352)
T cd00616 178 VVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGL--AQLEKLDEIIARRREIAERYKELLADLPGIR 255 (352)
T ss_pred EEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 66555443322110 0000000 000011111112222222222 2345667778888899999999999989999
Q ss_pred EEcCC-----CeeEEEEEEcC
Q 048438 158 VVFPC-----HFAVVCFRVSP 173 (239)
Q Consensus 158 ~~~~~-----~~~iv~f~~~~ 173 (239)
++.++ ...+++|.+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ 276 (352)
T cd00616 256 LPDVPPGVKHSYHLYVIRLDP 276 (352)
T ss_pred CCCCCCCCceeeEEEEEEECC
Confidence 87643 24688888864
No 81
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.50 E-value=5.3e-13 Score=115.34 Aligned_cols=135 Identities=14% Similarity=0.070 Sum_probs=83.0
Q ss_pred EecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcc
Q 048438 10 ATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPE 89 (239)
Q Consensus 10 ~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~ 89 (239)
++...+.+|.+.|+++|+++||+||+++++|+||+.. +.. ...+ ++|++++|+||++++|. .|+++. +++
T Consensus 155 v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~---~~~----~~~~-g~D~~~~S~~K~l~gp~-~G~l~~-~~~ 224 (363)
T TIGR01437 155 IKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEED---LQK----YYRL-GADLVIYSGAKAIEGPT-SGLVLG-KKK 224 (363)
T ss_pred EecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCc---hHH----HHHc-CCCEEEEeCCcccCCCc-eEEEEE-cHH
Confidence 4455678999999999999999999999999999721 110 1112 38999999999999998 677765 444
Q ss_pred cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 90 YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
.+........... ...+.+. ...+++..++..+-..+. +.++...+.++++.++|++++|++++.
T Consensus 225 ~i~~~~~~~~~~~----~~~~~~~-~~~~gl~aAl~~~~~~~~-~~~~~~~~~~~~l~~~L~~i~g~~~~~ 289 (363)
T TIGR01437 225 YIEWVKLQSKGIG----RAMKVGK-ENILGLTAALEQYLSTGK-ESGAEMVAKLTPFIEALNTLKGVSASI 289 (363)
T ss_pred HHHHHHhccCCCc----ceeccCH-HHHHHHHHHHHHHHccCc-ccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4433211000000 0001000 112445555554422222 222233345668999999999999874
No 82
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.50 E-value=7.1e-13 Score=116.20 Aligned_cols=198 Identities=15% Similarity=0.112 Sum_probs=121.4
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC-CCcceEEEcCcccCCCcccc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV-EGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~-~~~Ds~~~~~hK~l~~P~g~ 80 (239)
.+.+|++....+++|.+.|+++|.++|++||++++||.||+.|.+ .+..... ..++ +.+|.++.+++|.++.+ |
T Consensus 178 ~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~-g~~g~g~~~~~~~~~~~div~~t~sKa~g~~-G- 254 (407)
T PRK09064 178 RPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMY-GPRGGGIAERDGLMDRIDIIEGTLAKAFGVM-G- 254 (407)
T ss_pred CCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCccccc-CCCCCChHHhcCCCCCCeEEEEecchhhhcc-C-
Confidence 456788888889999999999999999999999999999985533 1111111 1122 24799999999998654 3
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
|+++. +++.+....... ..+.+..+.. ..+.....+++.+... ....++..++++++.+.|++. |++++
T Consensus 255 G~~~~-~~~~~~~l~~~~------~~~~~t~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~ 324 (407)
T PRK09064 255 GYIAG-SAALVDAVRSYA------PGFIFTTSLPPAIAAAALASIRHLKES--NEERERHQERAAKLKAALDAA-GIPVM 324 (407)
T ss_pred ceEec-CHHHHHHHHHhC------ccccccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCCC
Confidence 55543 443332211000 0111111111 2223334445544322 233566778999999999885 78765
Q ss_pred cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE----EECCEeEEEEEecCCCC
Q 048438 160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV----VLGGIYAIRFATGATLT 235 (239)
Q Consensus 160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~~~g~~~lR~~~~~~~t 235 (239)
. +..+++.+.++.. .....+.++|.++..+++... ...|..++|++++..+|
T Consensus 325 ~-~~~~iv~i~~~~~-----------------------~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t 380 (407)
T PRK09064 325 P-NESHIVPVMVGDP-----------------------EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHT 380 (407)
T ss_pred C-CCCCEEEEEeCCH-----------------------HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCC
Confidence 3 4577888876431 123366677765534444332 22355789999998888
Q ss_pred CcC
Q 048438 236 EER 238 (239)
Q Consensus 236 ~~~ 238 (239)
.+|
T Consensus 381 ~ed 383 (407)
T PRK09064 381 DEM 383 (407)
T ss_pred HHH
Confidence 764
No 83
>PLN02509 cystathionine beta-lyase
Probab=99.47 E-value=1.4e-12 Score=115.43 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=107.6
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|+++||++|++++||.||+.+....+ . +. ++|+++++++||+++|.+ .|+
T Consensus 218 TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~p-----l-~~-gaDivv~S~tK~l~G~gdv~gG~ 290 (464)
T PLN02509 218 TKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRP-----L-EL-GADIVMHSATKFIAGHSDVMAGV 290 (464)
T ss_pred CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCCh-----h-hc-CCcEEEecCcccccCCCccceeE
Confidence 45788889999999999999999999999999999999987755322 1 12 499999999999999877 777
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~ 161 (239)
++++++........ +....+..+.....|..++ +.+.+..++++..++++++.+.|++.|.++ |..|
T Consensus 291 v~~~~~~l~~~~~~----------~~~~~g~~l~p~~A~l~lr--~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yP 358 (464)
T PLN02509 291 LAVKGEKLAKEVYF----------LQNSEGSGLAPFDCWLCLR--GIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYA 358 (464)
T ss_pred EEeccHHHHHHHHH----------HHHhcCCCcCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence 77655432111100 0001122234455665555 456778899999999999999999999885 4433
Q ss_pred -----C-----------CeeEEEEEE
Q 048438 162 -----C-----------HFAVVCFRV 171 (239)
Q Consensus 162 -----~-----------~~~iv~f~~ 171 (239)
| ..++++|.+
T Consensus 359 gL~~~p~~~l~~~~~~g~gg~~sf~~ 384 (464)
T PLN02509 359 GLPDHPGHHLHFSQAKGAGSVFSFIT 384 (464)
T ss_pred CCCCCccHHHHHHhCCCCceEEEEEe
Confidence 1 146999988
No 84
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.46 E-value=1.5e-12 Score=113.13 Aligned_cols=151 Identities=19% Similarity=0.277 Sum_probs=109.0
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC 81 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g 81 (239)
.+-+|++...+|.+|.+.|+++|+++|+++|++++||.+|+.+...-+ +. + ++|+++.|+|||+++|.+ .|
T Consensus 138 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~p-----l~-~-GaDivv~S~tK~l~G~~d~~gG 210 (388)
T PRK08861 138 KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKP-----LE-L-GADFVIHSTTKYINGHSDVIGG 210 (388)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCC-----cc-c-CCCEEEeecceeccCCCcceeE
Confidence 356788888899999999999999999999999999999987654322 21 2 499999999999999876 46
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~ 160 (239)
++..+++++...... +....|....+...|..++ |.+.+.-|++++.+.|..+.+.|++.|.++ |..
T Consensus 211 ~i~~~~~~~~~~~~~----------~~~~~G~~~~p~~a~l~~r--gl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~y 278 (388)
T PRK08861 211 VLITKTKEHAEELAW----------WGNCIGATGTPFDSYMTLR--GIRTLGARMRVHEESAQQILAYLQTQSLVGTIYH 278 (388)
T ss_pred EEEecHHHHHHHHHH----------HHhccCCCCChHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 555544333222110 1111233334556676655 567788899999999999999999999875 433
Q ss_pred C-----C-----------CeeEEEEEEcC
Q 048438 161 P-----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 161 ~-----~-----------~~~iv~f~~~~ 173 (239)
| | ..++++|.+++
T Consensus 279 P~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (388)
T PRK08861 279 PSLPEHPGHEIAKKQQSGFGSMLSFEFAG 307 (388)
T ss_pred CCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence 3 1 13699999974
No 85
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.46 E-value=1.9e-12 Score=111.92 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=101.6
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc--eEE
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC--CCL 83 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~--g~l 83 (239)
-+|++..-+|.+|.+.|+++|+++||++|++++||++|+.+....+ ++ + ++|+++.++|||+++|.|+ |++
T Consensus 134 ~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p-----~~-~-g~Divv~S~sK~l~G~~g~~~G~v 206 (366)
T PRK07582 134 DLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRP-----LE-L-GADLVVASDTKALTGHSDLLLGYV 206 (366)
T ss_pred eEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCc-----hh-c-CCcEEEecccccccCCCCeeEEEE
Confidence 3556667778899999999999999999999999999863211111 11 2 4899999999999998874 666
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C-
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P- 161 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~- 161 (239)
+.+++........ +....+-....+..|..++. .+.+..++++..+++..+.+.|++.|.++-+. |
T Consensus 207 ~~~~~~l~~~l~~----------~~~~~g~~~~~~~a~l~~r~--l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~ 274 (366)
T PRK07582 207 AGRDPELMAAVER----------WRLLAGAIPGPFEAWLAHRS--LGTLGLRFARQCANALAVAELLAGHPAVRGVRYPG 274 (366)
T ss_pred EcCcHHHHHHHHH----------HHHHhCCCCCHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence 6544433222210 00011112234555655553 44667888899999999999999998876443 1
Q ss_pred ----C-----------CeeEEEEEEcC
Q 048438 162 ----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 ----~-----------~~~iv~f~~~~ 173 (239)
| ..++++|.+++
T Consensus 275 l~~~p~~~~~~~~~~~~gg~~s~~~~~ 301 (366)
T PRK07582 275 LPGDPAHEVAARQMRRFGGLVSFELAD 301 (366)
T ss_pred CCCCccHHHHHhhCCCCcceEEEEeCC
Confidence 2 35799999963
No 86
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.45 E-value=3.6e-12 Score=110.63 Aligned_cols=197 Identities=13% Similarity=0.057 Sum_probs=117.5
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccc-ccccCCC--CCcceEEEcCcccCCCcccce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEF-RHFIDGV--EGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~-~~~~~~~--~~~Ds~~~~~hK~l~~P~g~g 81 (239)
+.+++.....|.+|.+.|+++|+++|++||+++++|++|+.+.+..... ......+ ..-+++..++||+++ +.| |
T Consensus 169 ~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-g 246 (385)
T PRK05958 169 RALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALG-SSG-A 246 (385)
T ss_pred CeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcc-cCC-c
Confidence 4566666677889999999999999999999999999997664421100 0000111 123477899999985 444 5
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+++. ++++........ ..+....+.. ........+++.+... .+..++..++.+++.+.|++. +++++
T Consensus 247 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-~~~~~- 315 (385)
T PRK05958 247 AVLG-SETLIDYLINRA------RPFIFTTALPPAQAAAARAALRILRRE--PERRERLAALIARLRAGLRAL-GFQLM- 315 (385)
T ss_pred EEEc-CHHHHHHHHHhC------ccceecCCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcC-
Confidence 5543 333332211000 0111111111 2223334455543221 456677888999999999886 67754
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecCCCCCc
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGATLTEE 237 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~~~t~~ 237 (239)
++..+++.|.++.. ....++.++|.++|........ ..|..++|++++..+|.+
T Consensus 316 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~ 372 (385)
T PRK05958 316 DSQSAIQPLIVGDN-----------------------ERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEA 372 (385)
T ss_pred CCCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCCceEecccCCCCCCCCceEEEEecCCCCHH
Confidence 45677888887531 1233677778777655432111 124578999988766654
No 87
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.44 E-value=1.8e-12 Score=112.69 Aligned_cols=150 Identities=16% Similarity=0.181 Sum_probs=107.8
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC 81 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g 81 (239)
.+-+|++++.+|.+|.+.|+++|+++||++|++++||.+|+.+...-+ + .+ +||+++.++|||++++.+ .|
T Consensus 146 ~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~P-----l-~~-GaDivv~S~tK~l~Gh~d~~~G 218 (394)
T PRK09028 146 NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRP-----F-EM-GVDISIQAATKYIVGHSDVMLG 218 (394)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCc-----c-cc-CceEEEEeCCeEecCCCCEEEE
Confidence 356888899999999999999999999999999999999987643222 1 12 499999999999999943 23
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~ 160 (239)
++ +.++.+...... +....|.-..+...|..++ |.+.+.-|++++.+.+..+.+.|++.|.++ |..
T Consensus 219 ~~-~~~~~~~~~l~~----------~~~~~G~~~~p~~a~l~~r--gl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~y 285 (394)
T PRK09028 219 TA-TANEKHWDQLRE----------HSYLMGQCTSPDDVYLAMR--GLRTLGVRLAQHEKNALKVANWLATRPEVDHVRH 285 (394)
T ss_pred EE-ECCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEEC
Confidence 33 334333221110 0111233345566776665 566788899999999999999999998875 433
Q ss_pred C-----C-----------CeeEEEEEEcC
Q 048438 161 P-----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 161 ~-----~-----------~~~iv~f~~~~ 173 (239)
| | ..++++|.+++
T Consensus 286 Pgl~s~p~~~~~~~~~~g~gg~~sf~l~~ 314 (394)
T PRK09028 286 PAFETCPGHEFFKRDFSGSNGLFSFVLKQ 314 (394)
T ss_pred CCCCCCccHHHHHHhccCCCceEEEEECC
Confidence 3 1 14699999974
No 88
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.44 E-value=2.9e-12 Score=111.13 Aligned_cols=149 Identities=15% Similarity=0.223 Sum_probs=107.0
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++.+.+|.+|.+.||++|+++||++|++++||++|+.+...-+ ++ + ++|+++.++|||++++.+ .|+
T Consensus 136 tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~p-----l~-~-gaDivv~S~tK~l~G~~d~~gG~ 208 (377)
T TIGR01324 136 TKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFKP-----LE-H-GVDISIQAGTKYLVGHSDIMIGT 208 (377)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCc-----cc-c-CceEEEecCceeccCCCCceEEE
Confidence 56788889999999999999999999999999999999998766322 11 1 499999999999998865 455
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~ 161 (239)
++. +++.+..... ...-.|....+...|..++ |.+.+..+++++.+.+..+.+.|++.|.++ ++.|
T Consensus 209 v~~-~~~~~~~l~~----------~~~~~G~~l~p~~a~~~~r--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp 275 (377)
T TIGR01324 209 VVA-NARTWDQLRE----------HSYLMGQMVDADDAYTTLR--GLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHP 275 (377)
T ss_pred EEe-CHHHHHHHHH----------HHHHhCCCCCHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECC
Confidence 554 3333222110 0011122334455666665 456777889999999999999999988874 4433
Q ss_pred -----C-----------CeeEEEEEEcC
Q 048438 162 -----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~~ 173 (239)
| ..++++|.+++
T Consensus 276 ~l~~~p~~~~~~~~~~~~g~~~s~~l~~ 303 (377)
T TIGR01324 276 ALPSCPGHEFWKRDFSGSSGLFSFVLQR 303 (377)
T ss_pred CCCCCccHHHHHHhccCCCceEEEEECC
Confidence 1 14799999975
No 89
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.44 E-value=3.3e-12 Score=112.14 Aligned_cols=198 Identities=14% Similarity=0.139 Sum_probs=120.9
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCC-CCCcceEEEcCcccCCCcccc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDG-VEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~-~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
.+.+|++...++++|.+.|+++|.++|+++|++++||.||+.+.+ .+..... ..+ .+.+|.++.+++|+++.+.
T Consensus 178 ~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~-g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G-- 254 (410)
T PRK13392 178 RPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLY-GARGGGIAERDGLMDRIDMIQGTLAKAFGCLG-- 254 (410)
T ss_pred CCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCc-CCCCCchhhhccCCCCCcEEEEEChHhhhccc--
Confidence 456788888999999999999999999999999999999996644 1111111 111 1347888999999988763
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
|++.. +++......... ..+....+.. ........+++.+... ....++..+..+++.+.|++. |+++.
T Consensus 255 G~~~~-~~~~~~~l~~~~------~~~~~s~~~~~~~~~a~~aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~ 324 (410)
T PRK13392 255 GYIAA-SADLIDFVRSFA------PGFIFTTALPPAVAAGATAAIRHLKTS--QTERDAHQDRVAALKAKLNAN-GIPVM 324 (410)
T ss_pred chhhc-CHHHHHHHHHhC------cchhccCcCCHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCCC
Confidence 44433 443333211100 0011111111 1123333445543222 233456678889999999886 88765
Q ss_pred cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE----EECCEeEEEEEecCCCC
Q 048438 160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV----VLGGIYAIRFATGATLT 235 (239)
Q Consensus 160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~----~~~g~~~lR~~~~~~~t 235 (239)
+++.+++.+.++. +....++.++|.++..+++.+. ...|..++|++++..+|
T Consensus 325 -~~~~~~~~i~~~~-----------------------~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t 380 (410)
T PRK13392 325 -PSPSHIVPVMVGD-----------------------PTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHD 380 (410)
T ss_pred -CCCCCEEEEEeCC-----------------------HHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCC
Confidence 5677887666542 1123467777764433444332 22355789999998888
Q ss_pred CcC
Q 048438 236 EER 238 (239)
Q Consensus 236 ~~~ 238 (239)
.+|
T Consensus 381 ~ed 383 (410)
T PRK13392 381 DED 383 (410)
T ss_pred HHH
Confidence 764
No 90
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.44 E-value=2.4e-12 Score=111.69 Aligned_cols=149 Identities=12% Similarity=0.127 Sum_probs=110.5
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhC--CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc--cc
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFG--IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL--DC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g--i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~--g~ 80 (239)
+-+|.+.+.+|.+|.+.||++|+++||++| +.++||++|+.+.+ ++ ...+ +||+++.|.|||+++|. ++
T Consensus 148 TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~-----pl~~-GaDivv~S~tKyl~Ghsdv~~ 220 (395)
T PRK08114 148 TKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FK-----ALDF-GIDISIQAGTKYLVGHSDAMI 220 (395)
T ss_pred ceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cC-----HHHc-CCcEEEEcCcccccCCCccee
Confidence 468889999999999999999999999985 99999999998766 43 1222 49999999999999995 67
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~ 159 (239)
|+++. ++........ +....|.-..+...|..++ |.+.+.-|++++.+.|..+.+.|++.|.++ |.
T Consensus 221 G~v~~-~~~~~~~l~~----------~~~~~G~~~~p~~a~l~~r--gl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~ 287 (395)
T PRK08114 221 GTAVA-NARCWEQLRE----------NSYLMGQMVDADTAYMTSR--GLRTLGVRLRQHEESSLKVAEWLAEHPEVARVN 287 (395)
T ss_pred EEEEc-CHHHHHHHHH----------HHHhccCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEE
Confidence 76654 3332221110 0111233445566776655 567778899999999999999999999886 44
Q ss_pred cC-----C-----------CeeEEEEEEcC
Q 048438 160 FP-----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 160 ~~-----~-----------~~~iv~f~~~~ 173 (239)
.| | ..++++|.+++
T Consensus 288 yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK08114 288 HPALPGCKGHEFWKRDFTGSSGLFSFVLKK 317 (395)
T ss_pred CCCCCCCccHHHHHhhCCCCceEEEEEecC
Confidence 33 1 14699999975
No 91
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.43 E-value=2.3e-12 Score=111.60 Aligned_cols=150 Identities=17% Similarity=0.280 Sum_probs=104.8
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|+++||++|++++||++|+.+....+ +. . ++|+++.+++|+++++.. .|+
T Consensus 126 ~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~-----~~-~-g~Divv~S~tK~l~g~~~~~gG~ 198 (369)
T cd00614 126 TKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRP-----LE-L-GADIVVHSATKYIGGHSDVIAGV 198 (369)
T ss_pred CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCCh-----hh-h-CCcEEEeccceeccCCCCceEEE
Confidence 55777888889999999999999999999999999999987654211 11 1 499999999999987643 566
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~ 161 (239)
++.++++....... +....+........|..++.+ +.+..++++..++++++.+.|++.++++-+. |
T Consensus 199 v~~~~~~l~~~l~~----------~~~~~g~~~~p~~a~~~l~~l--~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p 266 (369)
T cd00614 199 VVGSGEALIQRLRF----------LRLALGTILSPFDAWLLLRGL--KTLPLRMERHSENALKVAEFLEKHPKVERVYYP 266 (369)
T ss_pred EEeCcHHHHHHHHH----------HHHhhCCCCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence 66544233322211 000012223345555555543 5567788899999999999999988775433 2
Q ss_pred ----------------CCeeEEEEEEcC
Q 048438 162 ----------------CHFAVVCFRVSP 173 (239)
Q Consensus 162 ----------------~~~~iv~f~~~~ 173 (239)
...+|++|.+++
T Consensus 267 ~l~~~~~~~~~~~~~~g~g~i~s~~l~~ 294 (369)
T cd00614 267 GLPSHPQHELAKKQMSGYGGVFSFELKG 294 (369)
T ss_pred CCCCCchHHHHHHhcCCCceEEEEEeCC
Confidence 136899999974
No 92
>PLN02822 serine palmitoyltransferase
Probab=99.43 E-value=9.4e-12 Score=111.19 Aligned_cols=206 Identities=10% Similarity=0.022 Sum_probs=125.7
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC--CCcceEEEcCcccCCCcccce
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV--EGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~--~~~Ds~~~~~hK~l~~P~g~g 81 (239)
.+|++..-.+++|.+.|+++|.++|++||+++++|.+|+.+.+ ....+.. ..++ ..+|.++.++.|.++++ | |
T Consensus 247 ~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvl-G~~G~G~~e~~~v~~~~~dii~~s~sKalg~~-G-G 323 (481)
T PLN02822 247 RYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVL-GKSGRGLSEHFGVPIEKIDIITAAMGHALATE-G-G 323 (481)
T ss_pred EEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCcccccc-CCCCCChHHHcCCCCCCCeEEEecchhhhhhC-C-e
Confidence 5677767778899999999999999999999999999986654 2111111 1122 24899999999998643 3 5
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+++ .+++.+...... ...+.+..+.+ ..+.+...+++.+. ...+..++.+++.+++.+.|++.+|+++..
T Consensus 324 ~i~-g~~~ii~~~~~~------~~~~~fsa~lPp~~~~Aa~~aL~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~ 394 (481)
T PLN02822 324 FCT-GSARVVDHQRLS------SSGYVFSASLPPYLASAAITAIDVLE--DNPSVLAKLKENIALLHKGLSDIPGLSIGS 394 (481)
T ss_pred EEE-cCHHHHHHHHhc------CCceeeccccCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 554 344444332210 01122222212 11122223444332 224567788899999999999887888877
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE------CCEeEEEEEecCCC
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL------GGIYAIRFATGATL 234 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~------~g~~~lR~~~~~~~ 234 (239)
++.++++.+.+++... ..+......+.+.++|.++..+++++... .+...+|++++..+
T Consensus 395 ~~~spi~~l~l~~~~~---------------~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~ 459 (481)
T PLN02822 395 NTLSPIVFLHLEKSTG---------------SAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGH 459 (481)
T ss_pred CCCCCEEEEEeCCCcc---------------cccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCC
Confidence 7788899999864210 00001233457778887443344443211 12347999988877
Q ss_pred CCcC
Q 048438 235 TEER 238 (239)
Q Consensus 235 t~~~ 238 (239)
|++|
T Consensus 460 t~ed 463 (481)
T PLN02822 460 TESD 463 (481)
T ss_pred CHHH
Confidence 7653
No 93
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.43 E-value=7.1e-12 Score=107.68 Aligned_cols=198 Identities=12% Similarity=0.037 Sum_probs=120.0
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc-cccCCC--CCcceEEEcCcccCCCcccce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFIDGV--EGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-~~~~~~--~~~Ds~~~~~hK~l~~P~g~g 81 (239)
+.+|+.....+.+|.+.|+++|.++|+++|+++++|.+|+.+........ ....++ ...|++..++||+++. .| |
T Consensus 147 ~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~g-G 224 (360)
T TIGR00858 147 RKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-YG-A 224 (360)
T ss_pred CeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-cC-c
Confidence 56676677778999999999999999999999999999986544221000 001111 2478999999999765 44 6
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+++. +++......... ..+....+.. ....+...+++.+. ..++..++..++.+++.+.|++. ++++.
T Consensus 225 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~- 293 (360)
T TIGR00858 225 YVAG-SQALIDYLINRA------RTLIFSTALPPAVAAAALAALELIQ--EEPWRREKLLALIARLRAGLEAL-GFTLM- 293 (360)
T ss_pred EEEc-CHHHHHHHHHhC------ccceecCCCCHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHHHHc-CCccC-
Confidence 5554 333332211000 0011111111 11223334444332 22456677889999999999886 67755
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecCCCCCc
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGATLTEE 237 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~~~t~~ 237 (239)
++..+++.+.++.. ....++.++|.++|........ ..+..++|++++.++|.+
T Consensus 294 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~ 350 (360)
T TIGR00858 294 PSCTPIVPVIIGDN-----------------------ASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPG 350 (360)
T ss_pred CCCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHH
Confidence 55677887776431 1123567777777665443211 134568999999877765
Q ss_pred C
Q 048438 238 R 238 (239)
Q Consensus 238 ~ 238 (239)
|
T Consensus 351 ~ 351 (360)
T TIGR00858 351 D 351 (360)
T ss_pred H
Confidence 3
No 94
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.43 E-value=2.7e-12 Score=111.81 Aligned_cols=150 Identities=17% Similarity=0.239 Sum_probs=104.3
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|.++||++|++++||+||+.+....+ +. .++|+++.+++|+++++.. .|+
T Consensus 147 tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~p-----l~--~g~Div~~S~sK~l~g~g~~~gG~ 219 (386)
T PRK06767 147 TKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRP-----LE--LGCDAVVHSATKYIGGHGDVVAGV 219 (386)
T ss_pred ceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCc-----hh--cCCcEEEecCcceecCCCCceeEE
Confidence 45777788889999999999999999999999999999976544322 11 1489999999999988765 466
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
++.+ ++.+...... +....+.....+..|..++. .+.+..++++..++++++.+.|+++|+++.+..|
T Consensus 220 v~~~-~~~i~~~~~~---------~~~~~g~~~~~~~a~l~~~~--L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p 287 (386)
T PRK06767 220 TICK-TRALAEKIRP---------MRKDIGGIMAPFDAWLLLRG--LKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYP 287 (386)
T ss_pred EEeC-hHHHHHHHHH---------HHHHhCCCCCHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence 6654 3333221100 00001111233444555443 3455678888999999999999999999865422
Q ss_pred -----------CeeEEEEEEcC
Q 048438 163 -----------HFAVVCFRVSP 173 (239)
Q Consensus 163 -----------~~~iv~f~~~~ 173 (239)
..+||+|.+++
T Consensus 288 ~~~~~~~~~~~~gg~vsf~l~~ 309 (386)
T PRK06767 288 EGELASRQMKRGGGVISFSIKG 309 (386)
T ss_pred CcHHHHHhCCCCCceEEEEEcC
Confidence 24799999974
No 95
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.42 E-value=7.8e-12 Score=109.65 Aligned_cols=198 Identities=13% Similarity=0.082 Sum_probs=120.4
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC-CCcceEEEcCcccCCCcccc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV-EGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~-~~~Ds~~~~~hK~l~~P~g~ 80 (239)
.+.+|+.....+++|.+.|+++|.++|+++|++++||+||+.|.+ .+..... ..++ +.+|.++.++.|.++.+.
T Consensus 177 ~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~-g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G-- 253 (406)
T PRK13393 177 RPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLY-GPRGGGIAEREGLADRLTIIEGTLAKAFGVMG-- 253 (406)
T ss_pred CCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCcccccc-CCCCCchhhhcCCCCCCeEEEEeCchhhcccC--
Confidence 456788888899999999999999999999999999999986643 1211111 1121 236888889999987653
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
|++. .+++......... ..+....+.. ..+.....+++.+.... ...++..++.+++.+.|++. |++++
T Consensus 254 G~~~-~~~~~~~~l~~~~------~~~~~t~~~~p~~~aa~~aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~-g~~~~ 323 (406)
T PRK13393 254 GYIT-GSAALCDFIRSFA------SGFIFTTSLPPAVAAGALASVRHLKASS--AERERHQDRVARLRARLDKA-GIPHL 323 (406)
T ss_pred ceee-CCHHHHHHHHHhC------cCceecCccCHHHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHHHHc-CCCcC
Confidence 4443 3333322211100 0111111222 12233445555443222 22245678889999999875 77655
Q ss_pred cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE----EEECCEeEEEEEecCCCC
Q 048438 160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN----VVLGGIYAIRFATGATLT 235 (239)
Q Consensus 160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~----~~~~g~~~lR~~~~~~~t 235 (239)
++..+++.+.+.+ ......+.++|.++..+++.. +...|...+|++++..+|
T Consensus 324 -~~~~~i~~v~~~~-----------------------~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t 379 (406)
T PRK13393 324 -PNPSHIVPVMVGD-----------------------PVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHT 379 (406)
T ss_pred -CCCCCeEEEEeCC-----------------------HHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCC
Confidence 4567788776532 112346777777653344433 223466789999999888
Q ss_pred CcC
Q 048438 236 EER 238 (239)
Q Consensus 236 ~~~ 238 (239)
.+|
T Consensus 380 ~ed 382 (406)
T PRK13393 380 DAD 382 (406)
T ss_pred HHH
Confidence 764
No 96
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.42 E-value=1.2e-11 Score=108.89 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=105.2
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l 83 (239)
+-+|++.+.++.+|.+.|+++|+++||++|++++||++|+.+....+ + .+ ++|++++|+|||+++|.. .|.+
T Consensus 150 TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~p-----l-~~-GaD~vv~S~tK~l~g~g~~~gG~ 222 (433)
T PRK08134 150 TRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRP-----F-EH-GADLVYHSATKFLGGHGTAIGGV 222 (433)
T ss_pred CeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-hc-CCCEEEeccccccCCCCCceEEE
Confidence 45778888899999999999999999999999999999998876443 2 22 499999999999876643 4555
Q ss_pred EeeCccccc--c-----ccc---CCCCc-cC--CC--Cc--------eecCCCCCChHHHHHHHHHhCHHHHHHHHHHHH
Q 048438 84 WATNPEYLK--N-----KAT---ESKPV-VD--YK--DW--------QITLSRSFRSLKLWFVIRNYGMENLRHFLRSHV 140 (239)
Q Consensus 84 ~~~~~~~l~--~-----~~~---~~~~~-~~--~~--~~--------~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~ 140 (239)
++....+.. . ... ...+. .+ .. .+ ....+........|..++ |.+.+..++++..
T Consensus 223 v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~--gL~tl~~R~~~~~ 300 (433)
T PRK08134 223 LVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQ--GIETLPLRMERHV 300 (433)
T ss_pred EEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhc--CCCcHHHHHHHHH
Confidence 553222111 0 000 00000 00 00 00 001122234455555444 5667889999999
Q ss_pred HHHHHHHHHHhCCCCeEEEc-C-----C------------CeeEEEEEEcC
Q 048438 141 NMARLFERLVSGDKRFEVVF-P-----C------------HFAVVCFRVSP 173 (239)
Q Consensus 141 ~la~~l~~~l~~~~g~~~~~-~-----~------------~~~iv~f~~~~ 173 (239)
+.+.++.+.|++.|.++-+. | + ..++++|.+++
T Consensus 301 ~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~ 351 (433)
T PRK08134 301 ANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKG 351 (433)
T ss_pred HHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecC
Confidence 99999999999998875332 2 1 14689999874
No 97
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.42 E-value=4.3e-12 Score=109.60 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=110.2
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|+++||++|++++||.+++.+...-+ + +. ++|++++|+||+++++.. .|+
T Consensus 137 TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~p-----l-~~-gaDivv~S~tK~l~g~~d~~gG~ 209 (364)
T PRK07269 137 TDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRP-----I-EL-GADIVLHSATKYLSGHNDVLAGV 209 (364)
T ss_pred ceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-hh-CCcEEEecCceeccCCCcccceE
Confidence 45788888999999999999999999999999999999876543211 2 11 499999999999998876 566
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~ 161 (239)
+..++++....... +....|.....+..|..++ +.+.+..++++..++++++.+.|++.|++. ++.|
T Consensus 210 v~~~~~~l~~~~~~----------~~~~~G~~~s~~~a~l~~~--~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~yp 277 (364)
T PRK07269 210 VVTNDLELYEKLFY----------NLNTTGAVLSPFDSYLLMR--GLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYT 277 (364)
T ss_pred EEeCcHHHHHHHHH----------HHHHhCCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCC
Confidence 66655443322210 0001122344566666655 445688899999999999999999988865 5557
Q ss_pred CCeeEEEEEEcC
Q 048438 162 CHFAVVCFRVSP 173 (239)
Q Consensus 162 ~~~~iv~f~~~~ 173 (239)
+..++++|.+.+
T Consensus 278 g~gg~~sf~~~~ 289 (364)
T PRK07269 278 GKGGMISFKVAD 289 (364)
T ss_pred CcCcEEEEEECC
Confidence 788899999963
No 98
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.41 E-value=8.2e-12 Score=110.03 Aligned_cols=160 Identities=15% Similarity=0.193 Sum_probs=104.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l 83 (239)
+-+|+..+-++.+|.+.||++|+++||++|+.++||++|+.+...-+ . .+ ++|++++|+||+++++. +.|.+
T Consensus 156 tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~~p-----~-~~-GaDivv~S~~K~l~G~gd~~gG~ 228 (437)
T PRK05613 156 TKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALVRP-----L-EL-GADVVVASLTKFYTGNGSGLGGV 228 (437)
T ss_pred CeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccccCh-----H-Hh-CCCEEEeeccceecCCCcceeEE
Confidence 34566677778899999999999999999999999999987755322 1 12 49999999999987653 34666
Q ss_pred EeeCcccccc-------c---ccCCCC------ccCCCC----------ceecCCCCCChHHHHHHHHHhCHHHHHHHHH
Q 048438 84 WATNPEYLKN-------K---ATESKP------VVDYKD----------WQITLSRSFRSLKLWFVIRNYGMENLRHFLR 137 (239)
Q Consensus 84 ~~~~~~~l~~-------~---~~~~~~------~~~~~~----------~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~ 137 (239)
++.++.+... . ...... ..+... +....|-...+...|..++ |.+.+.-|++
T Consensus 229 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~r--gl~TL~lR~~ 306 (437)
T PRK05613 229 LIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPFNAWVTAQ--GLDTLSLRLE 306 (437)
T ss_pred EEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHHHHHHHHc--ccCcHHHHHH
Confidence 6643221100 0 000000 000000 0001122334455665554 6678889999
Q ss_pred HHHHHHHHHHHHHhCCCCeE-EEcC-----C------------CeeEEEEEEcC
Q 048438 138 SHVNMARLFERLVSGDKRFE-VVFP-----C------------HFAVVCFRVSP 173 (239)
Q Consensus 138 ~~~~la~~l~~~l~~~~g~~-~~~~-----~------------~~~iv~f~~~~ 173 (239)
++.+.|.++.+.|++.|.++ |..| | ..++++|.+++
T Consensus 307 ~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~ 360 (437)
T PRK05613 307 RHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKG 360 (437)
T ss_pred HHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecC
Confidence 99999999999999999875 3332 1 13599999974
No 99
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.41 E-value=5.5e-12 Score=109.55 Aligned_cols=150 Identities=18% Similarity=0.246 Sum_probs=104.4
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC 81 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g 81 (239)
.+-+|++...+|.+|.+.|+++|+++||++|++++||++|+.+....+ + .+ ++|++++++|||+++|.+ .|
T Consensus 131 ~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~-----l-~~-g~Di~v~S~tK~l~G~~~~~~G 203 (378)
T TIGR01329 131 KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNP-----L-EL-GADIVYHSATKFLAGHSDVMAG 203 (378)
T ss_pred CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCCh-----h-hc-CCcEEEEecceeccCCccceeE
Confidence 356788888999999999999999999999999999999976644222 2 12 499999999999999987 88
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~ 160 (239)
+++++++........ .....|........|..++ +.+.+..++++..+++..+.+.|++.|.+. +..
T Consensus 204 ~v~~~~~~~~~~~~~----------~~~~~G~~~~~~~a~l~~~--~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~ 271 (378)
T TIGR01329 204 VLAVKGEEIAKKVYF----------LQNSTGSGLAPFDCWLLLR--GIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRY 271 (378)
T ss_pred EEEeCcHHHHHHHHH----------HHHhcCCcCCHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEEC
Confidence 888765433222110 0000122222333344333 446677888888899999999998887763 332
Q ss_pred C-----C-----------CeeEEEEEEc
Q 048438 161 P-----C-----------HFAVVCFRVS 172 (239)
Q Consensus 161 ~-----~-----------~~~iv~f~~~ 172 (239)
| | ..++++|.+.
T Consensus 272 p~l~~~p~~~l~~~~~~g~~~~~sf~~~ 299 (378)
T TIGR01329 272 AGLPSHPGFHLHFSQAKGAGSVLSFETG 299 (378)
T ss_pred CCCCCCccHHHHHHhCCCcceEEEEEEC
Confidence 2 1 2379999993
No 100
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.40 E-value=7.1e-12 Score=110.19 Aligned_cols=147 Identities=13% Similarity=0.078 Sum_probs=93.3
Q ss_pred CCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCccccccc
Q 048438 15 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNK 94 (239)
Q Consensus 15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~~ 94 (239)
+.+|...|+++|+++|+++|+++++|+||+.+..........+. .+|++++++|||+.+|.|. +++..++.+....
T Consensus 174 ~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~---~~di~~~S~~K~l~g~~gg-~i~~~~~~~~~~l 249 (416)
T PRK00011 174 SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP---HADVVTTTTHKTLRGPRGG-LILTNDEELAKKI 249 (416)
T ss_pred CcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC---CCcEEEecCCcCCCCCCce-EEEeCCHHHHHHH
Confidence 56788889999999999999999999999876543211111122 4899999999999888764 4444444443322
Q ss_pred ccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-CCCeeEEEEEEc
Q 048438 95 ATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-PCHFAVVCFRVS 172 (239)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~~~~~iv~f~~~ 172 (239)
.... ..+. ..+... ...++..++..+..++++++.++..++++++++.|++. |+++.. ....+++.+.++
T Consensus 250 ~~~~------~~~~-~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~ 321 (416)
T PRK00011 250 NSAV------FPGI-QGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLR 321 (416)
T ss_pred HHHh------Cccc-cCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCc
Confidence 1100 0000 001111 11222333333334567788889999999999999986 888763 234578888875
Q ss_pred C
Q 048438 173 P 173 (239)
Q Consensus 173 ~ 173 (239)
+
T Consensus 322 ~ 322 (416)
T PRK00011 322 S 322 (416)
T ss_pred c
Confidence 4
No 101
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.40 E-value=5.6e-12 Score=110.30 Aligned_cols=155 Identities=16% Similarity=0.142 Sum_probs=94.2
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
|-+|+.+. +.+|...|+++|+++|+++|+++++|++|+.+..........+. .+|+++.++|||+.+|.|.+++
T Consensus 162 ~~~v~~~~--~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~---~~dv~~~s~sK~l~G~~gg~i~- 235 (402)
T cd00378 162 PKLIVAGA--SAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP---GADVVTTTTHKTLRGPRGGLIL- 235 (402)
T ss_pred CCEEEecC--cccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc---CCcEEEeccccCCCCCCceEEE-
Confidence 44444433 34578889999999999999999999998766542111111122 4899999999999888865444
Q ss_pred eeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-CC
Q 048438 85 ATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-PC 162 (239)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~~ 162 (239)
..++++........ .... .++... ....+..++..+....++++.++..++++++.+.|++. |++++. +.
T Consensus 236 ~~~~~~~~~l~~~~------~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 307 (402)
T cd00378 236 TRKGELAKKINSAV------FPGL-QGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGT 307 (402)
T ss_pred eccHHHHHHHHHHh------Cccc-cCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCC
Confidence 44434433221100 0000 011111 11222223333322255677788889999999999986 888874 44
Q ss_pred CeeEEEEEEcC
Q 048438 163 HFAVVCFRVSP 173 (239)
Q Consensus 163 ~~~iv~f~~~~ 173 (239)
..+.+.+.+++
T Consensus 308 ~~~~v~v~~~~ 318 (402)
T cd00378 308 DNHLVLVDLRP 318 (402)
T ss_pred CCeEEEEeCCc
Confidence 67788788764
No 102
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.40 E-value=7.1e-12 Score=109.54 Aligned_cols=151 Identities=17% Similarity=0.274 Sum_probs=105.7
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l 83 (239)
+-+|++...+|.+|.+.|+++|.++|+++|++++||++|+.+....+ . .+ ++|+++.|+||+++++. ..|.+
T Consensus 151 tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~-----~-~~-gaDivv~S~sK~l~g~g~~~GG~ 223 (398)
T PRK07504 151 TKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKP-----L-EL-GAHIVVYSATKHIDGQGRCLGGV 223 (398)
T ss_pred ceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCc-----h-hh-CCCEEEeeccccccCCccceEEE
Confidence 46788889999999999999999999999999999999986644222 1 12 49999999999998764 23434
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC-
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP- 161 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~- 161 (239)
++.+++.+..... .+....+........|..++ +.+.+..++++..++++++.+.|++.|++. +..|
T Consensus 224 vv~~~~~i~~~~~---------~~~~~~g~~~s~~~A~~~l~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~ 292 (398)
T PRK07504 224 VLSDKAWIEEHLQ---------DYFRHTGPSLSPFNAWTLLK--GLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPG 292 (398)
T ss_pred EEeCcHHHHHHHH---------HHHHHhCCCCCHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCC
Confidence 4444343322110 00111223344555666655 456778899999999999999999998875 3333
Q ss_pred ----CC-----------eeEEEEEEcC
Q 048438 162 ----CH-----------FAVVCFRVSP 173 (239)
Q Consensus 162 ----~~-----------~~iv~f~~~~ 173 (239)
|+ .++++|.+++
T Consensus 293 l~~~~~~~~~~~~~~g~g~~~s~~~~~ 319 (398)
T PRK07504 293 RADHPQADIIAKQMTGGSTLVAFELKG 319 (398)
T ss_pred CCCCccHHHHHHhCCCCccEEEEEeCC
Confidence 11 5699999974
No 103
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.40 E-value=1.6e-11 Score=107.08 Aligned_cols=198 Identities=15% Similarity=0.088 Sum_probs=116.8
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccc-ccccCCC-CCcceEEEcCcccCCCcccce
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEF-RHFIDGV-EGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~-~~~~~~~-~~~Ds~~~~~hK~l~~P~g~g 81 (239)
.+.+|+.....+.+|.+.|+++|.++|++||+++++|++|+.+.+..... .....++ +.+|+++.++||+++++. .|
T Consensus 174 ~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G 252 (397)
T PRK06939 174 RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GG 252 (397)
T ss_pred CCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ce
Confidence 45667766677889999999999999999999999999997554321100 0001122 247999999999997664 47
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+++.. ++++....... ..+....+.. ..+..+..+++.+. ..++..++..++.+++.+.|++. ++++.
T Consensus 253 ~v~~~-~~~~~~l~~~~------~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~-~~~~~- 321 (397)
T PRK06939 253 YTAGR-KEVIDWLRQRS------RPYLFSNSLAPAIVAASIKVLELLE--ESDELRDRLWENARYFREGMTAA-GFTLG- 321 (397)
T ss_pred EEEeC-HHHHHHHHHhC------ccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc-CCCcC-
Confidence 76653 44443321100 0011111111 11222333444432 12455667778899999999876 66654
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEEEecCCCCC
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRFATGATLTE 236 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~~~~~t~ 236 (239)
++..+++.+.+++. .....+.++|.++|.... .... .+..++|++++..+++
T Consensus 322 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~~gI~v~-~~~~~~~~~~~~~iRi~~~~~~~~ 377 (397)
T PRK06939 322 PGEHPIIPVMLGDA-----------------------KLAQEFADRLLEEGVYVI-GFSFPVVPKGQARIRTQMSAAHTK 377 (397)
T ss_pred CCCCCEEEEEECCH-----------------------HHHHHHHHHHHHCCceEe-eeCCCCCCCCCceEEEEECCCCCH
Confidence 34455554444321 112367777877875544 3221 2346899998777765
Q ss_pred c
Q 048438 237 E 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 378 ~ 378 (397)
T PRK06939 378 E 378 (397)
T ss_pred H
Confidence 4
No 104
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.39 E-value=3e-11 Score=106.49 Aligned_cols=160 Identities=17% Similarity=0.201 Sum_probs=106.2
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l 83 (239)
+.+|++.+.+|.+|.+.|+++|+++||++|++++||++|+.+....+ ++ + ++|+++.|+||+++++.+ .|.+
T Consensus 156 tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~p-----l~-~-GaDivv~S~tK~lgg~G~~i~G~ 228 (436)
T PRK07812 156 TKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIRP-----LE-H-GADIVVHSATKYLGGHGTAIAGV 228 (436)
T ss_pred CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCc-----hh-c-CCCEEEEecccccCCCCCeEEEE
Confidence 45788889999999999999999999999999999999987655332 21 1 499999999999987632 4445
Q ss_pred EeeCcccc--cccc----cCCCCccCC--CC-------------ceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHH
Q 048438 84 WATNPEYL--KNKA----TESKPVVDY--KD-------------WQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNM 142 (239)
Q Consensus 84 ~~~~~~~l--~~~~----~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~l 142 (239)
++.+..+- .... .....+... .. +....|........|..++ |.+.+..|+++..+.
T Consensus 229 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r--gl~tL~~R~~~~~~n 306 (436)
T PRK07812 229 IVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQ--GLETLSLRIERHVAN 306 (436)
T ss_pred EEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhc--CcCcHHHHHHHHHHH
Confidence 55322111 0000 000000000 00 0001123344455565544 667889999999999
Q ss_pred HHHHHHHHhCCCCeEEE-cC-----C------------CeeEEEEEEcC
Q 048438 143 ARLFERLVSGDKRFEVV-FP-----C------------HFAVVCFRVSP 173 (239)
Q Consensus 143 a~~l~~~l~~~~g~~~~-~~-----~------------~~~iv~f~~~~ 173 (239)
|.++.+.|++.|+++-+ .| | ..++++|.+++
T Consensus 307 A~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~ 355 (436)
T PRK07812 307 AQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAG 355 (436)
T ss_pred HHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence 99999999999987533 33 1 13599999974
No 105
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=99.38 E-value=5.2e-12 Score=108.11 Aligned_cols=192 Identities=14% Similarity=0.058 Sum_probs=128.9
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA 85 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~ 85 (239)
-+|.+|+..|.+|+..| ++.+.+++.++||++-+.+..+++ ++. .|.+..+.+|+++ |.|.+++++
T Consensus 145 ~~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid-----~~~---~dvi~agsQKnlg-P~Gltvviv 210 (364)
T PRK12462 145 PFRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFD-----VEA---YGMVYAHAQKNLG-PAGVTVAII 210 (364)
T ss_pred cEEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCC-----hHH---ccEEEeeccccCC-CCceEEEEE
Confidence 56889999999999886 333446899999999888877776 443 6999999999998 999999998
Q ss_pred eCcccccccccCCCCccCCCCceecCC---CC--CChHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 86 TNPEYLKNKATESKPVVDYKDWQITLS---RS--FRSLKLWFVIRNYGME--NLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~l~~~g~~--g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
++ +.+.......+.++++..+.-..+ ++ +....+-.+++.+-.+ |++++.+++.+.++.+++.|.+.++|-.
T Consensus 211 s~-~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~ 289 (364)
T PRK12462 211 RR-ALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVID 289 (364)
T ss_pred CH-HHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 64 334332211112333211110111 11 1123333456666566 9999999999999999999999876654
Q ss_pred Ec-CC---CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 159 VF-PC---HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 159 ~~-~~---~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
.. .+ ..-.|+|++.+ .++...+.+...++|.+-+.+... ..-+|+|+-|-.
T Consensus 290 ~~~~~~~RS~mnv~f~~~~-----------------------~~l~~~f~~~a~~~gl~~lkGhr~--vgg~Ras~yna~ 344 (364)
T PRK12462 290 CHAHRAARSTMNVAFRFRQ-----------------------PRLDTLFKEQSTEAGFCGLSGHRS--IGGIRASLYNAV 344 (364)
T ss_pred CCCChhhcCcceEEEEcCC-----------------------HHHHHHHHHHHHHCCCccccCCcc--cCceEEEcCCCC
Confidence 32 11 23457888765 355667888888888876654333 233899987766
Q ss_pred CCc
Q 048438 235 TEE 237 (239)
Q Consensus 235 t~~ 237 (239)
+.+
T Consensus 345 ~~e 347 (364)
T PRK12462 345 SEQ 347 (364)
T ss_pred CHH
Confidence 543
No 106
>PLN02483 serine palmitoyltransferase
Probab=99.38 E-value=2.3e-11 Score=108.95 Aligned_cols=198 Identities=14% Similarity=0.010 Sum_probs=118.1
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCC--CCcceEEEcCcccCCCcccce
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGV--EGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~--~~~Ds~~~~~hK~l~~P~g~g 81 (239)
++|+.....+++|.+.|+++|.++|++||+++++|.||+.+.+- +..+.. ..++ ..+|+++.+++|++++ .| |
T Consensus 242 ~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G-~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~G-G 318 (489)
T PLN02483 242 IIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVG-KTGRGVCELLGVDPADVDIMMGTFTKSFGS-CG-G 318 (489)
T ss_pred EEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccC-CCCCchHHhcCCCcccCcEEEEecchhccc-Cc-e
Confidence 34555555588999999999999999999999999999866531 111100 1111 2489999999999865 34 6
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYG----MENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g----~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
+++. +++.+........ ......+.. ..+.....+++.+- .+...++.++..++.+++++.|+++ |+
T Consensus 319 ~i~~-~~~li~~l~~~~~------~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~ 390 (489)
T PLN02483 319 YIAG-SKELIQYLKRTCP------AHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GF 390 (489)
T ss_pred EEEc-CHHHHHHHHHhCc------cccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 5553 4444333221000 000011111 11122223344321 1223455677889999999999987 88
Q ss_pred EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE----CCEeEEEEEecC
Q 048438 157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL----GGIYAIRFATGA 232 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~----~g~~~lR~~~~~ 232 (239)
+++.+...+++.+.+... .....+.++|.++|...+. ... .+...+|++++.
T Consensus 391 ~v~~~~~sp~~~l~l~~~-----------------------~~~~~~~~~Ll~~GI~v~~-~~fp~~p~~~~~vRi~isa 446 (489)
T PLN02483 391 EVLGDNDSPVMPIMLYNP-----------------------AKIPAFSRECLKQNVAVVV-VGFPATPLLLARARICISA 446 (489)
T ss_pred cccCCCCCCEEEEEECCH-----------------------HHHHHHHHHHHHCCcEEee-eCCCCCCCCCceEEEEeCC
Confidence 877665566777666431 1112566677777766553 322 234689999988
Q ss_pred CCCCcC
Q 048438 233 TLTEER 238 (239)
Q Consensus 233 ~~t~~~ 238 (239)
.+|.+|
T Consensus 447 ~~t~ed 452 (489)
T PLN02483 447 SHSRED 452 (489)
T ss_pred CCCHHH
Confidence 777653
No 107
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.38 E-value=1.4e-11 Score=99.90 Aligned_cols=191 Identities=17% Similarity=0.177 Sum_probs=127.4
Q ss_pred cEEEEEecCC-CCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGT-TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gt-t~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
-+-+|+|-|- ++.|.+.|+++|++++++||..++||.+|+.+.+ .+..++ .+.-...+|.+.....|.+++-.|
T Consensus 193 r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~-G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G- 270 (417)
T KOG1359|consen 193 RLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFF-GETGRGTAEEFGVMGDVDIINSTLGKALGGASG- 270 (417)
T ss_pred eEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceee-cCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-
Confidence 3567777776 9999999999999999999999999999998755 222222 122124699999999999986543
Q ss_pred eEEEeeCcc----cccccccCCCCccCCCCceecCCCCC----ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 81 CCLWATNPE----YLKNKATESKPVVDYKDWQITLSRSF----RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 81 g~l~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
| |...|. ++++... +|-+..+-+. .+.+.+..+- .. ...+.+.....+++++.++.
T Consensus 271 G--yttgp~~li~llrqr~R---------pylFSnslppavV~~a~ka~dllm--~s---~~~i~~~~a~~qrfr~~me~ 334 (417)
T KOG1359|consen 271 G--YTTGPKPLISLLRQRSR---------PYLFSNSLPPAVVGMAAKAYDLLM--VS---SKEIQSRQANTQRFREFMEA 334 (417)
T ss_pred C--CccCChhHHHHHHhcCC---------ceeecCCCChhhhhhhHHHHHHHH--hh---HHHHHHHHHHHHHHHHHHHh
Confidence 2 222221 2222211 1222222221 1223332221 11 24455566888999999877
Q ss_pred CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE---EEEECCEeEEEEE
Q 048438 153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT---NVVLGGIYAIRFA 229 (239)
Q Consensus 153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~---~~~~~g~~~lR~~ 229 (239)
.||++.+.. .+|..+.+.+ .++..++.+.|.++|...+. +++.+|+..+|+.
T Consensus 335 -aGftIsg~~-hPI~pv~lGd-----------------------a~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVq 389 (417)
T KOG1359|consen 335 -AGFTISGAS-HPICPVMLGD-----------------------ARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQ 389 (417)
T ss_pred -cCceecCCC-CCccceeccc-----------------------HHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEE
Confidence 599987643 5677777654 46666888889999987443 4567899999999
Q ss_pred ecCCCCCcC
Q 048438 230 TGATLTEER 238 (239)
Q Consensus 230 ~~~~~t~~~ 238 (239)
+..-+|++|
T Consensus 390 iSAaHt~ed 398 (417)
T KOG1359|consen 390 ISAAHTEED 398 (417)
T ss_pred EehhcCHHH
Confidence 999998875
No 108
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.37 E-value=1.7e-11 Score=106.70 Aligned_cols=150 Identities=17% Similarity=0.290 Sum_probs=106.6
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++..-+|.+|.+.|+++|.++|+++|++++||.+|+.+....+ +. . ++|+++.++|||++++.+ .|+
T Consensus 138 tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~p-----l~-~-gaDivv~S~tK~l~G~~d~~~G~ 210 (386)
T PRK08045 138 PKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNP-----LA-L-GADLVLHSCTKYLNGHSDVVAGV 210 (386)
T ss_pred CeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCc-----hh-h-CCCEEEeecceeccCCCCceeEE
Confidence 45677788899999999999999999999999999999987644322 21 1 489999999999998876 566
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~ 161 (239)
+..++++....... +....+--..++..|.+++ |.+.+..+++++.+.+..+.+.|++.|.++-+ .|
T Consensus 211 vi~~~~~~~~~l~~----------~~~~~g~~~~p~~~~l~~r--gl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp 278 (386)
T PRK08045 211 VIAKDPDVVTELAW----------WANNIGVTGGAFDSYLLLR--GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHP 278 (386)
T ss_pred EEeCcHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--hhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECC
Confidence 65544443322210 0001111233455566655 34568889999999999999999999888633 32
Q ss_pred -----C-----------CeeEEEEEEcC
Q 048438 162 -----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~~ 173 (239)
| ..++++|.+++
T Consensus 279 ~l~~~p~~~~~~~~~~g~g~~~s~~~~~ 306 (386)
T PRK08045 279 SLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_pred CCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence 1 13699999974
No 109
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=99.37 E-value=1.8e-12 Score=105.15 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=115.5
Q ss_pred CCcc-cccChhH---HHHHHHHhCCEEEEeccccccccc---CcccccccCCCCCcceEEEcCcccCCCcccceEEEeeC
Q 048438 15 TAIT-AVDPLKP---LCDVAKQFGIWVHVDAAYAGSACI---FPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATN 87 (239)
Q Consensus 15 t~~G-~i~pl~~---i~~i~~~~gi~lhvD~A~~~~~~~---~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~ 87 (239)
+.+| .+.||++ +.++|+++|+.+|+|||.-..+.. ++ .+... ..+||+++++.|.|++|.|+ ++|.+
T Consensus 165 ~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~-vk~i~---~~fDSVsiCLSKglgAPVGS--ViVG~ 238 (384)
T KOG1368|consen 165 NNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVP-VKKIC---SAFDSVSICLSKGLGAPVGS--VIVGS 238 (384)
T ss_pred cccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCC-HHHHH---HhhhhhhhhhhccCCCCccc--EEEcc
Confidence 4445 7888654 677899999999999996543321 22 11112 24999999999999999765 66666
Q ss_pred cccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-CCeeE
Q 048438 88 PEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP-CHFAV 166 (239)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~-~~~~i 166 (239)
.+|+..... ....+.+|.|-..+-..+++-.+ +.-...+++.++.++.+.+.+.+.+++++-.+ .++||
T Consensus 239 k~FI~kA~~--------~RKalGGGmRQsGvLaaaaLval--~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNi 308 (384)
T KOG1368|consen 239 KDFIDKARH--------FRKALGGGMRQSGVLAAAALVAL--DENVPLLRADHKRAKELAEYINTPEEIRVEVPAVETNI 308 (384)
T ss_pred HHHHHHHHH--------HHHHhcCchhHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHhccccceeeecchhhcce
Confidence 677765431 12344455442222112223222 22234777888999999999998777988766 68999
Q ss_pred EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 167 VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 167 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
+...+..... -.+.+.+.+.+.|...+.. ....+|++++---|+
T Consensus 309 v~~~l~q~~~----------------------~~~~l~~~~~k~gi~lm~~----~s~r~Rivlh~Qvt~ 352 (384)
T KOG1368|consen 309 VNMVLCQARL----------------------TAEELCKFLEKNGILLMGG----ASRRIRIVLHHQVTD 352 (384)
T ss_pred eeeecccccC----------------------CHHHHHHHHHHCCeEEeec----cccceEEEEEEecCH
Confidence 9988765432 1236677777777776653 233588887655444
No 110
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.37 E-value=2.2e-11 Score=106.18 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=104.4
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++..-+|.+|.+.|+++|+++|+++|++++||++++.+....+ +. . ++|++++|++|++++|.+ .|+
T Consensus 147 tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p-----~~-~-gaDivv~S~sK~l~g~~~~~gG~ 219 (388)
T PRK07811 147 TKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQP-----LA-L-GADVVVHSTTKYIGGHSDVVGGA 219 (388)
T ss_pred CeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCc-----hh-h-CCcEEEecCceeecCCCCcEEEE
Confidence 45777788889999999999999999999999999999987644222 11 1 499999999999998865 466
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~ 161 (239)
++++++........ .....+........|..++ +.+.+..++++..++++.+.+.|++.|+++-+. |
T Consensus 220 vv~~~~~l~~~~~~----------~~~~~g~~~s~~~a~l~~~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP 287 (388)
T PRK07811 220 LVTNDEELDEAFAF----------LQNGAGAVPGPFDAYLTLR--GLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYP 287 (388)
T ss_pred EEECCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECC
Confidence 66655433222110 0000111222344454444 345677888888999999999999999886443 2
Q ss_pred -----C-----------CeeEEEEEEcC
Q 048438 162 -----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~~ 173 (239)
| ..++++|.+++
T Consensus 288 ~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 315 (388)
T PRK07811 288 GLPSHPGHEVAARQMRGFGGMVSVRLAG 315 (388)
T ss_pred CCCCCchHHHHHHhcCCCCceEEEEeCC
Confidence 1 13699999974
No 111
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.36 E-value=1.2e-11 Score=108.81 Aligned_cols=188 Identities=11% Similarity=0.065 Sum_probs=120.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccC--CC-CCcceEEEcCcccCCCcccce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GV-EGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~-~~~Ds~~~~~hK~l~~P~g~g 81 (239)
+.+|+.-..-++.|.+-|+++|.++|++||++++||.||+.|.+ .+..++..+ ++ ..+|+++.++.|.+++.. |
T Consensus 250 ~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~-G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G--G 326 (476)
T PLN02955 250 RKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVC-GENGGGVAEEFNCEADVDLCVGTLSKAAGCHG--G 326 (476)
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCcee-cCCCCcHHHHhCCCCCCcEEEEeCccchhccC--c
Confidence 34565666679999999999999999999999999999998766 332232211 11 358999999999987653 3
Q ss_pred EEEeeCc---ccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 82 CLWATNP---EYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 82 ~l~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
++.. +. +++..... .+.+..+-+ ..+.+...+++.+-.+ ..+.++.+++.++|++.+ |++
T Consensus 327 fi~g-s~~~~~~l~~~~~---------~~ifStalpp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~~----G~~ 390 (476)
T PLN02955 327 FIAC-SKKWKQLIQSRGR---------SFIFSTAIPVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKALS----GVD 390 (476)
T ss_pred eeec-HHHHHHHHHHhCC---------CCeecccccHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc----CCC
Confidence 3443 33 23332211 011111111 1122222334433222 235567778888888742 554
Q ss_pred EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE---EEEEEECCEeEEEEEecCCC
Q 048438 158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY---MTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~---~~~~~~~g~~~lR~~~~~~~ 234 (239)
+ .++|+++.+.. +.....+.++|.++|.+. ..+++..|...+|+++++.+
T Consensus 391 ~----~sPI~pI~ig~-----------------------~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~H 443 (476)
T PLN02955 391 I----SSPIISLVVGN-----------------------QEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAH 443 (476)
T ss_pred C----CCCEEEEEeCC-----------------------HHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCC
Confidence 3 47888888865 344457788898888763 34455678889999999999
Q ss_pred CCcC
Q 048438 235 TEER 238 (239)
Q Consensus 235 t~~~ 238 (239)
|.+|
T Consensus 444 t~ed 447 (476)
T PLN02955 444 TTED 447 (476)
T ss_pred CHHH
Confidence 9875
No 112
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.35 E-value=1.7e-11 Score=98.37 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=110.2
Q ss_pred CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
|..|.+...|+.....|.+.|.+.++++|+++|+++++.+|+..|-+++. ...+ ++||++.|+||.+.+...||
T Consensus 154 g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs-----~ke~-g~DFiVgSGHKsmAAs~PiG 227 (382)
T COG1103 154 GDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVS-----GKEI-GADFIVGSGHKSMAASAPIG 227 (382)
T ss_pred CCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecccccc-----cccc-CCCEEEecCccchhccCCee
Confidence 57899999999999999999999999999999999999999999998886 3344 59999999999999888899
Q ss_pred EEEeeCcccccccccCCCCccCCCCce-ecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQ-ITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
+|-++. ++-......++..+....-. +.++-| ...+-+.+++-.. .+. -++.+...+-+++|.+.|.++.|++-+
T Consensus 228 vl~~~e-E~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V-~eR-VkrWdeEv~kaR~fv~elEkigg~~ql 304 (382)
T COG1103 228 VLAMSE-EWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHV-VER-VKRWDEEVEKARWFVAELEKIGGVKQL 304 (382)
T ss_pred EEeehh-HHHHHHHhhcccccccceeeeecccccCchHHHHHhcCHHH-HHH-HHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 998854 33211111110001011111 122222 2233333332221 122 234455667899999999999878877
Q ss_pred cC--CCeeEEEEEEcC
Q 048438 160 FP--CHFAVVCFRVSP 173 (239)
Q Consensus 160 ~~--~~~~iv~f~~~~ 173 (239)
+. .+.-++.|.-+.
T Consensus 305 G~rPk~HdLm~Fetp~ 320 (382)
T COG1103 305 GERPKNHDLMKFETPV 320 (382)
T ss_pred CCCCcccceeeecCch
Confidence 63 345577776543
No 113
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.34 E-value=4.3e-11 Score=105.50 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=105.7
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l 83 (239)
+-+|++.+.+|.+|.+.|+++|+++||++|++++||++++.+....+ ++ + ++|+++.++|||+++|.. +|.+
T Consensus 150 tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~p-----l~-~-gaDivv~S~tK~lgg~g~~~Gg~ 222 (431)
T PRK08248 150 TKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRP-----IE-H-GADIVVHSATKFIGGHGTSIGGV 222 (431)
T ss_pred CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCCh-----hH-c-CCCEEEEcCccccCCCCCceEEE
Confidence 45677778889999999999999999999999999999975533222 21 2 499999999999988853 6666
Q ss_pred EeeCcccccccc-------cCCCCc-----cCCC-----------CceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKA-------TESKPV-----VDYK-----------DWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHV 140 (239)
Q Consensus 84 ~~~~~~~l~~~~-------~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~ 140 (239)
++.+........ ...... .+.. .+....|....+...|..++ |.+.+..+++++.
T Consensus 223 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r--gl~tl~~R~~~~~ 300 (431)
T PRK08248 223 IVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLLLQ--GLETLHLRMERHS 300 (431)
T ss_pred EEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHhc--CcCcHHHHHHHHH
Confidence 664332211000 000000 0000 00001123344455565554 5677789999999
Q ss_pred HHHHHHHHHHhCCCCeEEE-cC-----C------------CeeEEEEEEcC
Q 048438 141 NMARLFERLVSGDKRFEVV-FP-----C------------HFAVVCFRVSP 173 (239)
Q Consensus 141 ~la~~l~~~l~~~~g~~~~-~~-----~------------~~~iv~f~~~~ 173 (239)
+++.++.+.|++.|+++-+ .| | ..++++|.+++
T Consensus 301 ~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~ 351 (431)
T PRK08248 301 ENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKG 351 (431)
T ss_pred HHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence 9999999999999987633 32 1 13599999965
No 114
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.34 E-value=2.4e-11 Score=105.94 Aligned_cols=150 Identities=18% Similarity=0.281 Sum_probs=105.3
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++++.+|.+|.+.|+++|.++||++|++++||+||+.+....+ . .+ ++|+++.++|||+++|.+ +|+
T Consensus 139 tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~-----~-~~-g~Divv~S~tK~~~G~~~~laG~ 211 (390)
T PRK08064 139 TKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKP-----L-DL-GADVVLHSATKFLAGHSDVLAGL 211 (390)
T ss_pred ceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCc-----h-hh-CCcEEEeecceeccCCccceeEE
Confidence 46788889999999999999999999999999999999987644222 1 12 499999999999999987 587
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~ 161 (239)
+++++++....... .....+....+...|..++ |.+.+..++++..+.+..+.+.|++.|.+. ++.|
T Consensus 212 ~v~~~~~~~~~l~~----------~~~~~g~~~~~~~a~l~~~--gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp 279 (390)
T PRK08064 212 AVVKDEELAQKLYF----------LQNSFGAVLGVQDCWLVLR--GLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYP 279 (390)
T ss_pred EEeCCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECC
Confidence 77765444332211 0111122222344454443 455667888888999999999999887653 3332
Q ss_pred ----------------CCeeEEEEEEcC
Q 048438 162 ----------------CHFAVVCFRVSP 173 (239)
Q Consensus 162 ----------------~~~~iv~f~~~~ 173 (239)
...++++|.+++
T Consensus 280 ~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (390)
T PRK08064 280 GLQTHLGFDIQQSQATSAGAVLSFTLQS 307 (390)
T ss_pred CCCCCccHHHHHHhCCCcceEEEEEECC
Confidence 124699999864
No 115
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.34 E-value=1.4e-12 Score=109.61 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=85.3
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
.+-+|+++.. |.+|.+.|+++|+++||++|++++||+||++.....+........ .++|+++.|+||++.+|.++|++
T Consensus 154 ~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~-~~~div~~S~hK~l~g~~~~~~l 231 (294)
T cd00615 154 DAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM-AGADIVVQSTHKTLPALTQGSMI 231 (294)
T ss_pred CceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh-cCCcEEEEchhcccchHhHHHHH
Confidence 3566777764 789999999999999999999999999998753322211111111 24999999999999988888888
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCC-CCh-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRS-FRS-LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
++++. ........ ... ...+.+.+ +.. ..+-.+++.+..++ +++.++..++++++++.|.+
T Consensus 232 ~~~~~-~~~~~~~~--~~~----~~~~ttsps~~~~asl~~a~~~~~~~g-~~~~~~~~~~~~~~r~~l~~ 294 (294)
T cd00615 232 HVKGD-LVNPDRVN--EAL----NLHQSTSPSYLILASLDVARAMMALEG-KELVEELIELALYARQEINK 294 (294)
T ss_pred HhCCC-cCCHHHHH--HHH----HHHCCCCcHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhC
Confidence 77543 11110000 000 00111111 111 22223344443334 44677788889999888753
No 116
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.34 E-value=1.2e-10 Score=102.65 Aligned_cols=160 Identities=17% Similarity=0.177 Sum_probs=106.0
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l 83 (239)
+-+|++.+.+|.+|.+.|+++|+++||++|++++||++|+.+...-+ + .+ ++|+++.|+||++++|.+ .|.+
T Consensus 149 tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~p-----l-~~-gaDivv~S~tK~lgg~~~~~gG~ 221 (427)
T PRK05994 149 TKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIRP-----I-EH-GADIVVHSLTKFLGGHGNSMGGI 221 (427)
T ss_pred CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCCc-----c-cc-CCcEEEEcCccccCCCCCcEEEE
Confidence 45777788899999999999999999999999999999987644222 2 12 599999999999988765 4545
Q ss_pred EeeCc--ccccccc--------cCCCC--ccCC-C----------CceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHH
Q 048438 84 WATNP--EYLKNKA--------TESKP--VVDY-K----------DWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHV 140 (239)
Q Consensus 84 ~~~~~--~~l~~~~--------~~~~~--~~~~-~----------~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~ 140 (239)
++... ++..... ...+. ..+. . ......|.....+..|..++ |.+.+..++++..
T Consensus 222 v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~--~l~tL~~r~~~~~ 299 (427)
T PRK05994 222 IVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILT--GIETLPLRMQRHS 299 (427)
T ss_pred EEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHc--CcccHHHHHHHHH
Confidence 54322 1211000 00000 0000 0 00001233344555665555 5678889999999
Q ss_pred HHHHHHHHHHhCCCCeEEE-cC-----C------------CeeEEEEEEcC
Q 048438 141 NMARLFERLVSGDKRFEVV-FP-----C------------HFAVVCFRVSP 173 (239)
Q Consensus 141 ~la~~l~~~l~~~~g~~~~-~~-----~------------~~~iv~f~~~~ 173 (239)
+++.++.+.|++.|+++-+ .| + ..++++|.+++
T Consensus 300 ~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~ 350 (427)
T PRK05994 300 DNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKG 350 (427)
T ss_pred HHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecC
Confidence 9999999999999987633 32 0 14599999974
No 117
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.34 E-value=4.4e-11 Score=104.69 Aligned_cols=150 Identities=20% Similarity=0.318 Sum_probs=105.4
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++..-+|.+|.+.|+++|+++|+++|++++||++|+.+...-+ +. + ++|.++.|+||++++|.+ .|.
T Consensus 146 tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~p-----l~-~-gaDivv~S~tK~l~g~~~~~~G~ 218 (405)
T PRK08776 146 PKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKP-----LE-F-GADLVLHSTTKYINGHSDVVGGA 218 (405)
T ss_pred CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCc-----cc-c-cCCEEEecCceeecCCCCceEEE
Confidence 45677778889999999999999999999999999999976543211 21 2 499999999999998865 466
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~ 161 (239)
++.+++++...... +....+-....+..|..++ |.+.++.++++..+++..+.+.|++.|.++-+ .|
T Consensus 219 vv~~~~~l~~~l~~----------~~~~~g~~~s~~~a~l~~~--gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP 286 (405)
T PRK08776 219 VVARDAELHQQLVW----------WANALGLTGSPFDAFLTLR--GLRTLDARLRVHQENADAIAALLDGHAAVNQVYYP 286 (405)
T ss_pred EEeCCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--hhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECC
Confidence 65554443322210 0001111234455665554 45677889999999999999999999887633 32
Q ss_pred -----C-----------CeeEEEEEEcC
Q 048438 162 -----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~~ 173 (239)
+ ..++++|.+++
T Consensus 287 ~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 314 (405)
T PRK08776 287 GLASHPGHALAARQQKGFGAMLSFELEG 314 (405)
T ss_pred CCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence 1 13699999975
No 118
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.34 E-value=3e-11 Score=105.34 Aligned_cols=151 Identities=17% Similarity=0.252 Sum_probs=103.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|+++||++|++++||+||+.+...-+ +. .++|+++.+++|++++|.+ .|+
T Consensus 145 tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~-----~~--~g~Divv~S~sK~lgg~g~~~gG~ 217 (391)
T TIGR01328 145 TKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNP-----VA--LGVDVVVHSATKYIGGHGDVVAGL 217 (391)
T ss_pred CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCc-----hh--cCCCEEEccccccccCCCCceEEE
Confidence 45777778889999999999999999999999999999986644222 11 1499999999999988765 355
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~ 161 (239)
+ +.+++++....... .....+........|.+++ +.+.+..++++..++++++.+.|++.|+++-+. |
T Consensus 218 v-~~~~~li~~l~~~~--------~~~~~g~~l~~~~a~l~l~--~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp 286 (391)
T TIGR01328 218 I-CGKAELLQQIRMVG--------IKDMTGSVISPFDAWLILR--GLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYP 286 (391)
T ss_pred E-EcCHHHHHHHHHHH--------HHhCCCCCCCcHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 4 44555443222100 0001122233444555555 345667788889999999999999999886443 2
Q ss_pred -----C-----------CeeEEEEEEcC
Q 048438 162 -----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~~ 173 (239)
| ..++++|.+++
T Consensus 287 ~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 314 (391)
T TIGR01328 287 GFEDHPGHDIAAKQMRMGGGMITFELKG 314 (391)
T ss_pred CCCCCccHHHHHHhCCCCCceEEEEeCC
Confidence 1 13599999974
No 119
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.33 E-value=3.2e-11 Score=104.78 Aligned_cols=150 Identities=19% Similarity=0.270 Sum_probs=103.5
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...++.+|.+.|+++|+++||++|++++||++++.+....+ . ++ ++|++++|+||++++|.. .|+
T Consensus 135 t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p-----~-~~-gaDivv~S~tK~l~g~~d~~gG~ 207 (380)
T PRK06176 135 TKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNP-----L-LL-GADIVVHSGTKYLGGHSDVVAGL 207 (380)
T ss_pred ceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCc-----c-cc-CCCEEEecCceeccCCccceeeE
Confidence 45677778899999999999999999999999999999986543222 1 22 499999999999998864 565
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~ 161 (239)
+..+++++...... +....+....+...|..++ |.+.+..++++..+.+.++.+.|++.|.+.-+ .|
T Consensus 208 vv~~~~~~~~~~~~----------~~~~~G~~~~~~~~~l~~~--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p 275 (380)
T PRK06176 208 VTTNNEALAQEIAF----------FQNAIGGVLGPQDSWLLQR--GIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYP 275 (380)
T ss_pred EEecHHHHHHHHHH----------HHHHhcCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECC
Confidence 65544433222110 0111122223344454443 55667788888889999999999998887543 22
Q ss_pred -----C-----------CeeEEEEEEcC
Q 048438 162 -----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~~ 173 (239)
+ ..++++|.+++
T Consensus 276 ~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 303 (380)
T PRK06176 276 GLPTHPNHELAKKQMRGFSGMLSFTLKN 303 (380)
T ss_pred CCCCCccHHHHHhhCCCCceEEEEEECC
Confidence 1 13699999864
No 120
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.33 E-value=3.4e-11 Score=104.69 Aligned_cols=148 Identities=16% Similarity=0.284 Sum_probs=101.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-c-eE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-C-CC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~-g~ 82 (239)
+-+|++...+|.+|.+.|+++|.++||++|++++||++|+.+...-+ + .+ ++|+++.|+||+++++.. . |+
T Consensus 140 tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~p-----l-~~-g~Divv~S~sK~l~g~g~~~gG~ 212 (380)
T TIGR01325 140 TKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQP-----L-KL-GADVVVYSATKHIDGQGRVMGGV 212 (380)
T ss_pred ceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-hh-CCCEEEeeccceecCCCCeEEEE
Confidence 55777788889999999999999999999999999999975433211 1 11 489999999999987742 3 44
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~ 161 (239)
++ .+++.+..... +....+........|.+++ +.+.+..++++..+.++++.+.|++.|+++-+. |
T Consensus 213 vv-~~~~~~~~l~~----------~~~~~g~~~~p~~a~~~l~--~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp 279 (380)
T TIGR01325 213 IA-GSEELMAEVAV----------YLRHTGPAMSPFNAWVLLK--GLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYP 279 (380)
T ss_pred EE-eCHHHHHHHHH----------HHHhhCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence 44 34443322210 0001122333444555554 456677788899999999999999998876432 2
Q ss_pred -----C-----------CeeEEEEEEc
Q 048438 162 -----C-----------HFAVVCFRVS 172 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~ 172 (239)
| ..++++|.++
T Consensus 280 ~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 280 GLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred CCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 1 1469999997
No 121
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.33 E-value=4.5e-11 Score=103.91 Aligned_cols=150 Identities=19% Similarity=0.317 Sum_probs=107.5
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|+++||++|++++||.+|+.+....+ +. + ++|+++.+++||++++.+ .|+
T Consensus 137 tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~p-----l~-~-gaDivv~S~sK~l~G~~~~~~G~ 209 (382)
T TIGR02080 137 PKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNP-----LA-L-GADLVLHSCTKYLNGHSDVIAGA 209 (382)
T ss_pred ceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCc-----hh-h-CCCEEEeecceeccCCCCceeEE
Confidence 56777888899999999999999999999999999999976643222 11 1 489999999999998876 666
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~ 161 (239)
+.++++........ +....|.....+..|..++ |.+.+..+++++.+++..+.+.|++.|.++-+ .|
T Consensus 210 i~~~~~~~~~~l~~----------~~~~~g~~~sp~~a~l~lr--~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP 277 (382)
T TIGR02080 210 VIAKDPQVAEELAW----------WANNLGVTGGAFDSYLTLR--GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYP 277 (382)
T ss_pred EEeCCHHHHHHHHH----------HHHccCCCCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECC
Confidence 66655443322210 1111122334556666655 45677888999999999999999998888643 33
Q ss_pred -----C-----------CeeEEEEEEcC
Q 048438 162 -----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~~ 173 (239)
| ..++++|.+++
T Consensus 278 ~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 278 GLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred CCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 1 13699999974
No 122
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.32 E-value=6.1e-11 Score=103.11 Aligned_cols=198 Identities=12% Similarity=0.043 Sum_probs=115.4
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccc-cccCCC-CCcceEEEcCcccCCCcccce
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFIDGV-EGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-~~~~~~-~~~Ds~~~~~hK~l~~P~g~g 81 (239)
.+.+|+.....+.+|.+.|+++|.++|++||+++++|++|+.+.+...... ....++ ...|++..+++|+++.+. |
T Consensus 163 ~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g--G 240 (385)
T TIGR01825 163 GKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG--G 240 (385)
T ss_pred CCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC--C
Confidence 355667777778999999999999999999999999999976644311000 000011 248999999999986543 5
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+++. +++.+....... ..+....... ....++..+++.+.. ..+..++..++.+++.+.|++. |+++.
T Consensus 241 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-g~~~~- 309 (385)
T TIGR01825 241 YAAG-HKELIEYLKNRA------RPFLFSTAQPPAVVAALAAAVDELQR--SPELMERLWDNTRFFKAGLGKL-GYDTG- 309 (385)
T ss_pred EEec-CHHHHHHHHHhC------ccccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCC-
Confidence 5543 334333221100 0011111111 111233334443311 1245566678889999999885 88765
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE----ECCEeEEEEEecCCCCC
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV----LGGIYAIRFATGATLTE 236 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~----~~g~~~lR~~~~~~~t~ 236 (239)
.+..+++.+.++.. .....+.+.|.++|.. +.... ..|...+|++++..+|+
T Consensus 310 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~L~~~gi~-v~~~~~~~~~~~~~~iRi~~~~~~~~ 365 (385)
T TIGR01825 310 GSETPITPVVIGDE-----------------------KAAQEFSRRLFDEGIF-AQSIVFPTVPRGTARIRNIPTAEHTK 365 (385)
T ss_pred CCCCCEEEEEECCH-----------------------HHHHHHHHHHHHCCcE-EcccCCCCCCCCCceEEEEEcCCCCH
Confidence 34456666665321 1123567777777554 33221 22457899998777665
Q ss_pred cC
Q 048438 237 ER 238 (239)
Q Consensus 237 ~~ 238 (239)
+|
T Consensus 366 e~ 367 (385)
T TIGR01825 366 DD 367 (385)
T ss_pred HH
Confidence 53
No 123
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.32 E-value=9.4e-11 Score=102.35 Aligned_cols=208 Identities=12% Similarity=0.054 Sum_probs=119.0
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc-----cCCCCCcceEEEcCcccCCCcc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-----IDGVEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~-----~~~~~~~Ds~~~~~hK~l~~P~ 78 (239)
.+.+|++-...+++|.+.|+++|.++|++||++++||.+|+.+.+ ....+.. +....++|.++++.+|.++ |.
T Consensus 138 ~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~-g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~ 215 (392)
T PLN03227 138 QRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTL-GKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SV 215 (392)
T ss_pred CcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECccccccc-CCCCCcHHHHcCCCCCCCceEEEeechhhhh-cc
Confidence 345677777778899999999999999999999999999985543 1111100 1112248999999999865 54
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
| |++.. +++......... ....+. ....++..++++..+ .....+++.++.+++.+++++.|++. ++.
T Consensus 216 g-g~v~~-~~~~~~~~~~~~------~~~~~~--~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~ 284 (392)
T PLN03227 216 G-GMTVG-SEEVVDHQRLSG------SGYCFS--ASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS-SHP 284 (392)
T ss_pred C-cEEec-CHHHHHHHHHhC------cCcccc--CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence 3 33333 333332211000 001111 111122223222111 11112456777889999999999752 332
Q ss_pred ----------EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-------EE
Q 048438 158 ----------VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-------VL 220 (239)
Q Consensus 158 ----------~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-------~~ 220 (239)
+.....++|+.+.+.+... ......+.....+.+.+.++|.+..... ..
T Consensus 285 ~~~~~rg~~~~~~~~~~~i~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~ 350 (392)
T PLN03227 285 YALKLRNRLVITSDPISPIIYLRLSDQEA--------------TRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQL 350 (392)
T ss_pred cccccccccccCCCCCCCEEEEEeCCHHH--------------hhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCC
Confidence 1223457889888854210 0000012233577788888887654210 11
Q ss_pred CCEeEEEEEecCCCCCcC
Q 048438 221 GGIYAIRFATGATLTEER 238 (239)
Q Consensus 221 ~g~~~lR~~~~~~~t~~~ 238 (239)
-....+|++++..+|++|
T Consensus 351 ~P~~~iR~~~~~~~t~ee 368 (392)
T PLN03227 351 VPPPCLRVVANASHTRED 368 (392)
T ss_pred CCCceEEEEecCCCCHHH
Confidence 124789999999999875
No 124
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.31 E-value=5.1e-11 Score=103.91 Aligned_cols=150 Identities=19% Similarity=0.262 Sum_probs=102.3
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l 83 (239)
+-+|++...+|.+|.+.|+++|+++||++|++++||.+++.+....+ +. . ++|+++.|+||+++++.. .|.+
T Consensus 147 tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~p-----l~-~-g~Divv~S~sK~~~g~g~~~GG~ 219 (390)
T PRK08133 147 TKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQP-----LK-L-GADVVIHSATKYLDGQGRVLGGA 219 (390)
T ss_pred CeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCc-----hh-h-CCcEEEeecceeecCCcceEeEE
Confidence 45677778889999999999999999999999999999876544222 11 1 489999999999876542 3333
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC-
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC- 162 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~- 162 (239)
++.+++.+..... +....+........|..++ |.+.+..++++..+++.++.+.|++.|+++-+..|
T Consensus 220 vv~~~~~~~~~~~----------~~~~~g~~~~~~~a~~~l~--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~ 287 (390)
T PRK08133 220 VVGSKELMEEVFG----------FLRTAGPTLSPFNAWVFLK--GLETLSLRMEAHSANALALAEWLEAHPGVERVFYPG 287 (390)
T ss_pred EEcCHHHHHHHHH----------HHHHhCCCCCHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCC
Confidence 4333333322110 0001122233344555554 45678889999999999999999999888644321
Q ss_pred ----------------CeeEEEEEEcC
Q 048438 163 ----------------HFAVVCFRVSP 173 (239)
Q Consensus 163 ----------------~~~iv~f~~~~ 173 (239)
..++++|.+++
T Consensus 288 l~~~p~~~~~~~~~~g~g~~~s~~l~~ 314 (390)
T PRK08133 288 LPSHPQHELAKRQQKGGGAIVSFEVKG 314 (390)
T ss_pred CCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 14699999964
No 125
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.31 E-value=5.8e-11 Score=103.08 Aligned_cols=148 Identities=19% Similarity=0.302 Sum_probs=103.4
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++..-+|.+|.+.|+++|+++|+++|++++||++++.+...-+ .. + ++|+++.+++||+++|.+ .|+
T Consensus 135 tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p-----~~-~-g~Divv~S~sK~l~G~~~~~~G~ 207 (377)
T PRK07671 135 TKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSP-----IS-L-GADIVLHSATKYLGGHSDVVAGL 207 (377)
T ss_pred CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCCh-----hh-h-CCeEEEecCcccccCCccceeEE
Confidence 45677778889999999999999999999999999999976433211 11 1 489999999999998864 566
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~ 161 (239)
++++++........ +....+........|..++ +.+.+..++++..++++++.+.|++.|++.-+. |
T Consensus 208 ~v~~~~~l~~~~~~----------~~~~~g~~~~~~~a~l~~~--~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p 275 (377)
T PRK07671 208 VVVNSPELAEDLHF----------VQNSTGGILGPQDSWLLLR--GLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYP 275 (377)
T ss_pred EEeCcHHHHHHHHH----------HHHhhcCCCCHHHHHHHHc--CcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECC
Confidence 66655433322210 0111122333455565555 345667788999999999999999998875443 2
Q ss_pred C----------------CeeEEEEEE
Q 048438 162 C----------------HFAVVCFRV 171 (239)
Q Consensus 162 ~----------------~~~iv~f~~ 171 (239)
. ..++++|.+
T Consensus 276 ~l~~~~~~~~~~~~~~g~g~~~s~~~ 301 (377)
T PRK07671 276 GLPSHPNHELAKEQANGFGGMISFDV 301 (377)
T ss_pred CCCCCccHHHHHhhCCCCCceEEEEe
Confidence 1 136999998
No 126
>PRK05968 hypothetical protein; Provisional
Probab=99.31 E-value=3.5e-11 Score=104.94 Aligned_cols=149 Identities=19% Similarity=0.256 Sum_probs=102.4
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceEE
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCCL 83 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~l 83 (239)
-+|++..-++.++.+.|+++|+++||++|++++||++|+.+...-+ .. + ++|+++.|+||++++|.+ .|++
T Consensus 149 klV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p-----~~-~-g~Divv~S~tK~l~g~~~~~gG~i 221 (389)
T PRK05968 149 KLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRP-----IT-L-GVDLVIHSASKYLGGHSDTVAGVV 221 (389)
T ss_pred CEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCc-----hh-c-CCcEEEeeccccccCCCCeEEEEE
Confidence 3566667778888899999999999999999999999977643222 11 1 489999999999999865 5655
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC-
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC- 162 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~- 162 (239)
+ .+++.+....... ....+-.......|..++ +.+.+..++++..++++++.+.|++.|+++.+..|
T Consensus 222 ~-~~~~~~~~l~~~~---------~~~~g~~~~~~~A~~~l~--~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~ 289 (389)
T PRK05968 222 A-GSKEHIARINAEA---------YPYLGAKLSPFEAWLLLR--GLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPA 289 (389)
T ss_pred E-ECHHHHHHHHHHH---------HHhCCCCCChHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence 5 4444433221100 000111122344444444 44566889999999999999999999998766532
Q ss_pred -----------CeeEEEEEEcC
Q 048438 163 -----------HFAVVCFRVSP 173 (239)
Q Consensus 163 -----------~~~iv~f~~~~ 173 (239)
..++++|.+++
T Consensus 290 l~~~~~~~~~g~g~~~sf~~~~ 311 (389)
T PRK05968 290 LANHPPAGLSGTSGLFSFIFRE 311 (389)
T ss_pred CCCChHHhCCCCceEEEEEECC
Confidence 14699999974
No 127
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.31 E-value=6.6e-11 Score=99.61 Aligned_cols=198 Identities=19% Similarity=0.178 Sum_probs=130.9
Q ss_pred CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCC-CCCcceEEEcCcccCCCccc
Q 048438 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDG-VEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~-~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+|-+|..-...++.|.+-||+||++++++||+...+|..|+.|.. .+...+. -+| +.++|.|+..+-|.+++-
T Consensus 302 svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlY-G~rGaGvgerdGvm~kvDiIsGTLgKafGcV-- 378 (570)
T KOG1360|consen 302 SVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLY-GPRGAGVGERDGVMHKVDIISGTLGKAFGCV-- 378 (570)
T ss_pred CCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccc-cCCCCCccccCCcchhhhhcccchhhhcccc--
Confidence 4688999999999999999999999999999999999999988754 3222110 122 346999999999997653
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCCh-HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRS-LKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
|..+......+....+... .+-+..+-+... .+...+.+.+ ..+|. ...+.+++..+|+++.|.++ |+.
T Consensus 379 -GGYIAat~~LvDmiRSyAa------GFIFTTSLPP~vl~GAleaVr~lk~~eg~-~lR~~hqrnv~~~kq~l~~~-GiP 449 (570)
T KOG1360|consen 379 -GGYIAATRKLVDMIRSYAA------GFIFTTSLPPMVLAGALEAVRILKSEEGR-VLRRQHQRNVKYVKQLLMEL-GIP 449 (570)
T ss_pred -cceehhhhhHHHHHHHhcC------ceEEecCCChHHHHhHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHc-CCc
Confidence 3333323222222211100 111222222111 1122233333 23343 33345778889999999886 998
Q ss_pred EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE----EEEECCEeEEEEEecCC
Q 048438 158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT----NVVLGGIYAIRFATGAT 233 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~----~~~~~g~~~lR~~~~~~ 233 (239)
++ +..+.||..++.+ ..++.++.+.|..+..+|+. +|+.+|.-.||++++-.
T Consensus 450 Vi-~~pSHIiPv~vgd-----------------------a~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~ 505 (570)
T KOG1360|consen 450 VI-PNPSHIIPVRVGD-----------------------AALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPH 505 (570)
T ss_pred cc-CCCcceeeeeccC-----------------------HHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCC
Confidence 77 4457899999876 46677888888888887764 46778999999998777
Q ss_pred CCC
Q 048438 234 LTE 236 (239)
Q Consensus 234 ~t~ 236 (239)
+|.
T Consensus 506 HT~ 508 (570)
T KOG1360|consen 506 HTP 508 (570)
T ss_pred CCH
Confidence 653
No 128
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.30 E-value=1e-11 Score=94.90 Aligned_cols=81 Identities=30% Similarity=0.298 Sum_probs=67.4
Q ss_pred CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
+..|.+++.++.++.+|...|+++|.++|+++|+++|+|+||+++........ ... .++|+++.++|||+++ .++|
T Consensus 90 ~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~-~~~d~~~~s~~K~~~~-~~~G 165 (170)
T cd01494 90 KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVL--IPE-GGADVVTFSLHKNLGG-EGGG 165 (170)
T ss_pred cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccc--ccc-ccCCEEEEEcccccCC-CceE
Confidence 35678899999999999999999999999999999999999998877652211 111 3599999999999987 7899
Q ss_pred EEEee
Q 048438 82 CLWAT 86 (239)
Q Consensus 82 ~l~~~ 86 (239)
+++++
T Consensus 166 ~l~~~ 170 (170)
T cd01494 166 VVIVK 170 (170)
T ss_pred EEEeC
Confidence 99874
No 129
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.30 E-value=1e-10 Score=96.22 Aligned_cols=195 Identities=12% Similarity=0.061 Sum_probs=131.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC-CcccceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF-ATLDCCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-~P~g~g~l 83 (239)
..+|+.++...-||...++.+|.+++|++|+.+.-|=||++|+++.+ +... ++|+-+.+.||.|. +|.+.+++
T Consensus 167 ~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~-----Lh~~-gaDfaigcsyKYLNgGPGapa~l 240 (407)
T COG3844 167 VAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVD-----LHAA-GADFAIGCSYKYLNGGPGAPAGL 240 (407)
T ss_pred eEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCccee-----eccc-CCCeeeeeeceeccCCCCCceeE
Confidence 35788899999999999999999999999999999999999999987 4443 59999999999995 47778888
Q ss_pred EeeCcccccccc---cCCCCccCC----CCcee-cCCCCC--------ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKA---TESKPVVDY----KDWQI-TLSRSF--------RSLKLWFVIRNYGMENLRHFLRSHVNMARLFE 147 (239)
Q Consensus 84 ~~~~~~~l~~~~---~~~~~~~~~----~~~~~-~~~~~~--------~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~ 147 (239)
|+.+. ..+... +.+.+.-+. ..|.. ++.++| ...++-.+|...+.-++.+..++...|+.++.
T Consensus 241 ~v~~~-h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fi 319 (407)
T COG3844 241 FVAPR-HRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFI 319 (407)
T ss_pred Eeccc-cccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHH
Confidence 88432 111111 111110000 00111 122333 12334445655555578888889999999999
Q ss_pred HHHhCC-C--CeEEEcCC----CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE
Q 048438 148 RLVSGD-K--RFEVVFPC----HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL 220 (239)
Q Consensus 148 ~~l~~~-~--g~~~~~~~----~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~ 220 (239)
+.++.. + ++++..|. +-+-|+|..+.. . ++.+.|.++|.+- ..
T Consensus 320 eLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~----------------------~----~V~qaLi~rGVig----D~ 369 (407)
T COG3844 320 ELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHG----------------------Y----QVMQALIDRGVIG----DF 369 (407)
T ss_pred HHHHhccccCCcEEeccchhhhccceeeEecCcH----------------------H----HHHHHHHHcCccc----cc
Confidence 999764 2 67888763 456788888642 1 4555677777652 13
Q ss_pred CCEeEEEEEecCCCCC
Q 048438 221 GGIYAIRFATGATLTE 236 (239)
Q Consensus 221 ~g~~~lR~~~~~~~t~ 236 (239)
+...++||.+.-..++
T Consensus 370 R~P~vlRfgftPlY~~ 385 (407)
T COG3844 370 REPDVLRFGFTPLYVS 385 (407)
T ss_pred cCCCeeeecCccceec
Confidence 3457889987755443
No 130
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.30 E-value=1.1e-10 Score=102.04 Aligned_cols=150 Identities=19% Similarity=0.279 Sum_probs=103.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l 83 (239)
+-+|++..-+|.+|.+.|+++|+++||++|++++||++|+.+....+ .. . ++|+++.|++|+++++.. .|.+
T Consensus 150 tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~-----l~-~-~~Divv~S~sK~l~g~~~~~gG~ 222 (398)
T PRK08249 150 CDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNP-----LA-L-GADLVIHSATKFLSGHADALGGV 222 (398)
T ss_pred CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCc-----hh-h-CCCEEeccCceecCCCCCceEEE
Confidence 45677778889999999999999999999999999999986533211 11 1 499999999999987653 2334
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC-
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP- 161 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~- 161 (239)
++.++++...... +....+........|.+++ +.+.+..++++..++++++.+.|++.|.++-+ .|
T Consensus 223 vv~~~~l~~~l~~----------~~~~~g~~~s~~~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~ 290 (398)
T PRK08249 223 VCGSKELMEQVYH----------YREINGATMDPMSAYLILR--GMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPG 290 (398)
T ss_pred EECCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCC
Confidence 4444444332211 0111122334455555555 45677888899999999999999998887633 33
Q ss_pred ----C-----------CeeEEEEEEcC
Q 048438 162 ----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 ----~-----------~~~iv~f~~~~ 173 (239)
| ..++++|.+++
T Consensus 291 l~~~~~~~~~~~~~~g~g~~~sf~~~~ 317 (398)
T PRK08249 291 LETHPNHEIAKAQMRGFGGILSFVLKG 317 (398)
T ss_pred CCCCccHHHHHhhCCCCCceEEEEEcC
Confidence 1 14699999974
No 131
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.29 E-value=5.9e-11 Score=103.89 Aligned_cols=150 Identities=15% Similarity=0.215 Sum_probs=105.3
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|+++||++|++++||++|+.+...-+ . .+ ++|+++.++||+++++.. .|+
T Consensus 156 tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~-----~-~~-gaDivv~S~tK~l~g~g~~~gG~ 228 (403)
T PRK07810 156 TQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRG-----L-PL-GADVVVYSGTKHIDGQGRVLGGA 228 (403)
T ss_pred ceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCCh-----h-hc-CCcEEEccCCceecCCcCceeEE
Confidence 35677888899999999999999999999999999999986644222 1 11 499999999999987643 466
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~ 161 (239)
++.++ +.+..... .+....+........|..++ +.+.+..++++..+++.++.+.|++.|+++-+. |
T Consensus 229 v~~~~-~~~~~~l~---------~~~~~~g~~~s~~~a~l~l~--~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP 296 (403)
T PRK07810 229 ILGDR-EYIDGPVQ---------KLMRHTGPALSAFNAWVLLK--GLETLALRVRHSNASALRIAEFLEGHPAVRWVRYP 296 (403)
T ss_pred EEeCh-HHHHHHHH---------HHHHHhCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence 65543 33321100 00001122344555665555 456788999999999999999999998876433 2
Q ss_pred -----C-----------CeeEEEEEEcC
Q 048438 162 -----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~~ 173 (239)
| ..++++|.+++
T Consensus 297 ~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 297 FLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred CCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 1 24699999975
No 132
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.29 E-value=1.7e-10 Score=101.60 Aligned_cols=160 Identities=13% Similarity=0.192 Sum_probs=104.6
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l 83 (239)
+-+|++...+|.+|.+.|+++|.++|+++|++++||++|+.+...-+ +. + ++|+++.|+|||++++.. .|.+
T Consensus 144 tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~p-----~~-~-gaDivv~S~tK~l~G~g~~~gG~ 216 (425)
T PRK06084 144 TKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCRP-----FE-H-GADIVVHSLTKYIGGHGTSIGGI 216 (425)
T ss_pred CcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCCh-----hh-c-CCCEEEECchhcccccccceeEE
Confidence 45677788889999999999999999999999999999987654222 21 1 499999999999987743 2334
Q ss_pred EeeCccc--ccc--cc---cC-CCCccCC--CC-c-------------eecCCCCCChHHHHHHHHHhCHHHHHHHHHHH
Q 048438 84 WATNPEY--LKN--KA---TE-SKPVVDY--KD-W-------------QITLSRSFRSLKLWFVIRNYGMENLRHFLRSH 139 (239)
Q Consensus 84 ~~~~~~~--l~~--~~---~~-~~~~~~~--~~-~-------------~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~ 139 (239)
++.++.+ ... .. .. ...+.+. .. . ....+.+......|..++ |.+.+..++++.
T Consensus 217 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~l~lr--gl~tl~~R~~~~ 294 (425)
T PRK06084 217 VVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAFLILQ--GLETLALRMERH 294 (425)
T ss_pred EEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHc--CcCcHHHHHHHH
Confidence 4432211 000 00 00 0000000 00 0 001123344455665555 567888999999
Q ss_pred HHHHHHHHHHHhCCCCeEEE-cC---------------C--CeeEEEEEEcC
Q 048438 140 VNMARLFERLVSGDKRFEVV-FP---------------C--HFAVVCFRVSP 173 (239)
Q Consensus 140 ~~la~~l~~~l~~~~g~~~~-~~---------------~--~~~iv~f~~~~ 173 (239)
.+.+.++.+.|++.|+++-+ .| + ..++++|.+++
T Consensus 295 ~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~ 346 (425)
T PRK06084 295 TENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKG 346 (425)
T ss_pred HHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecC
Confidence 99999999999999987633 32 1 14599999975
No 133
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.29 E-value=2.7e-11 Score=105.45 Aligned_cols=150 Identities=21% Similarity=0.292 Sum_probs=103.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|+++||++|++++||++|+.+...-+ +. .++|+++.|+||++++|.+ .|+
T Consensus 138 tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~-----l~--~GaDivv~S~sK~l~g~~d~~gG~ 210 (385)
T PRK08574 138 TKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRP-----LR--HGADFVVHSLTKYIAGHNDVVGGV 210 (385)
T ss_pred ceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCh-----hh--hCCcEEEeeCceeecCCCCceeEE
Confidence 45677788889999999999999999999999999999987643221 11 1489999999999998865 354
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~ 161 (239)
+++.+++....... +....|.....+..|.+++ +.+.+..++++..+++.++.+.|++.|.++ |..|
T Consensus 211 vi~~~~~~~~~~~~----------~~~~~g~~~~p~~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP 278 (385)
T PRK08574 211 AVAWSGEFLEELWE----------WRRRLGTIMQPFEAYLVLR--GLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYP 278 (385)
T ss_pred EEECcHHHHHHHHH----------HHHhcCCCCCHHHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECC
Confidence 55544443322210 0001122233444555554 456678899999999999999999988875 3332
Q ss_pred -----C-------------CeeEEEEEEcC
Q 048438 162 -----C-------------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-------------~~~iv~f~~~~ 173 (239)
| ..++++|.+++
T Consensus 279 ~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~ 308 (385)
T PRK08574 279 GLPSDPYHGVAKRLFGKDLYGGVVSFRVKG 308 (385)
T ss_pred CCCCCchHHHHHHhCCCCCcceEEEEEeCC
Confidence 0 13589999974
No 134
>PRK06460 hypothetical protein; Provisional
Probab=99.26 E-value=2.5e-10 Score=99.13 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=101.5
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|+++|+++|++++||.+|+.+.. .. . +. .++|+++.++||+++++.+ .|+
T Consensus 131 tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-~~---~-l~--~~~divv~S~sK~l~G~~~~~~G~ 203 (376)
T PRK06460 131 YDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-QK---P-LE--LGADIVVHSASKFLAGHNDVIAGL 203 (376)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-CC---h-hh--cCCCEEEeecceeccCCCCceEEE
Confidence 45788888899999999999999999999999999999975421 11 1 11 1389999999999876643 555
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-cC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV-FP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~-~~ 161 (239)
++ .+++....... .....+....+...|.+++ +.+.++.++++..++++++.+.|++.|.++-+ .|
T Consensus 204 ~~-~~~~l~~~l~~----------~~~~~g~~~~~~~a~~~l~--~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp 270 (376)
T PRK06460 204 AA-GYGKLLNVIDQ----------MRRTLGTSLDPHAAYLTLR--GIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYP 270 (376)
T ss_pred Ee-cCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence 54 34443322210 0000111122334455444 45677888999999999999999998887533 33
Q ss_pred -----C-----------CeeEEEEEEcC
Q 048438 162 -----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~~ 173 (239)
| ..++++|.+++
T Consensus 271 ~l~~~p~~~~~~~~~~g~gg~~s~~~~~ 298 (376)
T PRK06460 271 GLKSHVDYEIARRVLKGFGGVLSFEVNG 298 (376)
T ss_pred CCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 1 24799999974
No 135
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.26 E-value=1.3e-10 Score=100.68 Aligned_cols=150 Identities=21% Similarity=0.317 Sum_probs=102.8
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++..-+|.+|.+.++++|+++|+++|+++++|.+++.+....+ .. .++|+++.|++|+++++.+ .|+
T Consensus 137 tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p-----~~--~g~di~i~S~sK~~~g~~d~~~G~ 209 (366)
T PRK08247 137 TKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRP-----LE--EGADIVIHSATKYLGGHNDVLAGL 209 (366)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCc-----hh--cCCcEEEeecceeccCCCceeeeE
Confidence 45677777788899999999999999999999999999975543222 11 1499999999999988754 455
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~ 161 (239)
+..+++.+...... .....+........|..++ +.+.+..++++..+.++.+.+.|++.|++..+. |
T Consensus 210 iv~~~~~l~~~~~~----------~~~~~g~~~s~~~a~l~~~--~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P 277 (366)
T PRK08247 210 VVAKGQELCERLAY----------YQNAAGAVLSPFDSWLLIR--GMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYP 277 (366)
T ss_pred EecChHHHHHHHHH----------HHHhcCCCCChHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecC
Confidence 54433333222210 0000111122334455444 344666788888999999999999999987544 4
Q ss_pred CCeeEEEEEEcC
Q 048438 162 CHFAVVCFRVSP 173 (239)
Q Consensus 162 ~~~~iv~f~~~~ 173 (239)
+..++++|.+++
T Consensus 278 ~~gg~~sf~~~~ 289 (366)
T PRK08247 278 GRGGMLSFRLQD 289 (366)
T ss_pred CcCcEEEEEECC
Confidence 478899998853
No 136
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.24 E-value=1.4e-10 Score=100.64 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=103.0
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|...+-+|.++.+.|+++|+++||+++ ++||++++.+...-+ + +. ++|++++|+||++.++.+ .|+
T Consensus 149 tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~p-----l-~~-gaDivv~S~tK~i~G~~d~~gG~ 219 (384)
T PRK06434 149 YDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQNP-----L-DL-GADVVIHSATKYISGHSDVVMGV 219 (384)
T ss_pred eeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCCc-----h-hc-CCCEEEeecccccCCCCCceEEE
Confidence 346677788889999999999999999998 568999976543212 2 11 499999999999998875 566
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~ 161 (239)
+..++++....... +....|.....+..|..++ |.+.+..++++..+++..+.+.|++.|.++ |..|
T Consensus 220 vv~~~~~~~~~~~~----------~~~~~G~~~~~~~A~l~~~--gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yP 287 (384)
T PRK06434 220 AGTNNKSIFNNLVE----------RRKTLGSNPDPIQAYLALR--GLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYP 287 (384)
T ss_pred EecCcHHHHHHHHH----------HHHhcCCCCCHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECC
Confidence 65544432221110 0001122334455565554 556788999999999999999999998875 4433
Q ss_pred C----------CeeEEEEEEcC
Q 048438 162 C----------HFAVVCFRVSP 173 (239)
Q Consensus 162 ~----------~~~iv~f~~~~ 173 (239)
. ..++++|.+++
T Consensus 288 gl~~~~~~~~g~g~~~sf~l~~ 309 (384)
T PRK06434 288 DTEIGKKVLRGFGGMLSFELRS 309 (384)
T ss_pred ChHHHHHhcCCCCceEEEEECC
Confidence 2 25699999964
No 137
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=99.24 E-value=2.8e-11 Score=104.24 Aligned_cols=150 Identities=21% Similarity=0.319 Sum_probs=115.5
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhC-CEEEEecccccccccCcccccccCC-CCCcceEEEcCcccCCCcc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFG-IWVHVDAAYAGSACIFPEFRHFIDG-VEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g-i~lhvD~A~~~~~~~~~~~~~~~~~-~~~~Ds~~~~~hK~l~~P~ 78 (239)
+|++|+++++..|++..|..|.|-+|.++|++++ +|+|.-| |+..++.+.+....+-. .+..||++.+.--||+.|.
T Consensus 289 agkkPLilia~iGasi~GqnDmi~kildi~eahakfWLHasG-haiAALt~aepnnil~HV~eqldSMal~ialWLGiPS 367 (838)
T KOG0630|consen 289 AGKKPLILIADIGASICGQNDMILKILDICEAHAKFWLHASG-HAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPS 367 (838)
T ss_pred CCCCCeEEEEeccchhhcchHHHHHHHHHHHHhhheeEeecc-chhhheeecCcccchhHHHHHHhhccchhHHHhCCCC
Confidence 5899999999999999999999999999999997 9999988 55666666543321111 2369999999999999997
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
..-+++- +| +.... .+...-.+-..++..++++|.+++++|.+.+.+++.....+++.+.+.+.+.+++++
T Consensus 368 aPiV~LH-RP--leg~a------aSafesdpi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiem 438 (838)
T KOG0630|consen 368 APIVLLH-RP--LEGSA------ASAFESDPILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEM 438 (838)
T ss_pred CceEEee-cc--ccccc------chhcccChHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeE
Confidence 6544443 22 11110 000011122356788999999999999999999999999999999999999999998
Q ss_pred Ec
Q 048438 159 VF 160 (239)
Q Consensus 159 ~~ 160 (239)
++
T Consensus 439 ig 440 (838)
T KOG0630|consen 439 IG 440 (838)
T ss_pred ec
Confidence 86
No 138
>PRK05939 hypothetical protein; Provisional
Probab=99.20 E-value=7.2e-10 Score=96.84 Aligned_cols=160 Identities=13% Similarity=0.105 Sum_probs=102.9
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCC 82 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~ 82 (239)
.+-+|++.+.+|.+|.+.|+++|+++||++|++++||++|+.+.. ++ ...+ ++|+++.++||+++++.. .|.
T Consensus 131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~-~~-----~~~~-gaDivv~S~sK~~~g~g~~igg 203 (397)
T PRK05939 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL-FR-----PKDV-GASLVINSLSKYIAGHGNALGG 203 (397)
T ss_pred CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc-cC-----cccc-CCEEEEecCeecccCCCCeEEE
Confidence 356778888999999999999999999999999999999976633 22 1112 499999999999987643 122
Q ss_pred EEeeCcc--cccccccCCCCccCCC--Cce---------ecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 83 LWATNPE--YLKNKATESKPVVDYK--DWQ---------ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 83 l~~~~~~--~l~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
.++.+.. +........ ...++. .+. ...|....+...|..++ |.+.+..|++++.+++..+.+.
T Consensus 204 ~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~r--gl~tl~~R~~~~~~na~~la~~ 280 (397)
T PRK05939 204 AVTDTGLFDWSAYPNIFP-AYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAI--GAETLALRVDRSCSNALALAQF 280 (397)
T ss_pred EEecCcccccccccchhh-hhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHc--CcCcHHHHHHHHHHHHHHHHHH
Confidence 2332211 100000000 000000 000 01122334455565544 6778889999999999999999
Q ss_pred HhCCCCeE-EEcCC----------------CeeEEEEEEcC
Q 048438 150 VSGDKRFE-VVFPC----------------HFAVVCFRVSP 173 (239)
Q Consensus 150 l~~~~g~~-~~~~~----------------~~~iv~f~~~~ 173 (239)
|++.|.++ |..|. ..++++|.+++
T Consensus 281 L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~ 321 (397)
T PRK05939 281 LEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELAD 321 (397)
T ss_pred HHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCC
Confidence 99988875 33331 24699999974
No 139
>PLN02242 methionine gamma-lyase
Probab=99.20 E-value=7.4e-10 Score=97.37 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=100.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++..-+|.+|.+.|+++|+++||++|++++||.+|+... .+ ...+ ++|+++.+++|+++++.. .|+
T Consensus 164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~--~~-----~~~~-g~divv~S~SK~l~g~g~~~gG~ 235 (418)
T PLN02242 164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMV--LS-----PARL-GADVVVHSISKFISGGADIIAGA 235 (418)
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccC--CC-----HHHc-CCcEEEEeCccccCCCCCceEEE
Confidence 5678888889999999999999999999999999999996432 22 1112 389999999999987754 355
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
++ .+++++......... .....+....+...|..++ +...+..++++..+.++++.+.|++. ++++..|.
T Consensus 236 iv-~~~~li~~l~~~~~~------~~~~~g~~~~~~~A~l~~~--~l~tl~~r~~~~~~~a~~la~~L~~~-~~~V~yP~ 305 (418)
T PLN02242 236 VC-GPAELVNSMMDLHHG------ALMLLGPTMNPKVAFELSE--RLPHLSLRMKEHCRRAMEYAKRMKEL-GLKVIYPG 305 (418)
T ss_pred EE-cCHHHHHHHHHHhhh------hhhccCCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhC-CCEEECCC
Confidence 55 344443332110000 0001122233334444433 44466778888999999999999998 67877541
Q ss_pred -------------------CeeEEEEEEcC
Q 048438 163 -------------------HFAVVCFRVSP 173 (239)
Q Consensus 163 -------------------~~~iv~f~~~~ 173 (239)
..++++|.+.+
T Consensus 306 l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~ 335 (418)
T PLN02242 306 LEDHPQHALLKSMANKGYGFGGLLCLDMDT 335 (418)
T ss_pred CCCCccHHHHHHhcccCCCceeEEEEEECC
Confidence 13689999853
No 140
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.19 E-value=2.4e-10 Score=98.72 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=94.3
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
+|-+|++ |.+..-...|++++.+||++.|+++++|+||-+|.+....+..-+ +.||+++++.||.|.+|.| |++
T Consensus 169 kPklIi~--G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~---~~ADvvt~sThKtl~GPrg-giI 242 (399)
T PF00464_consen 169 KPKLIIC--GASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPF---PYADVVTGSTHKTLRGPRG-GII 242 (399)
T ss_dssp --SEEEE--E-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GC---CTSSEEEEESSGGG-SSS--EEE
T ss_pred CCCEEEE--CchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCcc---ccceEEEeeccccccccCc-eEE
Confidence 3444443 445566678899999999999999999999988877554332223 3599999999999999997 666
Q ss_pred EeeC-------------cccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 84 WATN-------------PEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 84 ~~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
+.++ +++-...... .+ + ..+++-.. ..+++..+++......+++..++..++|+.|.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~I~~a---vf---P-~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~ 315 (399)
T PF00464_consen 243 LTNKGSKNVDKKGKEIDEELAEKIDSA---VF---P-GLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEA 315 (399)
T ss_dssp EES-SEEEE-TTS-EEEHHHHHHHHHH---HT---T-TT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCccccCCcccccHHHHHHHhccc---cC---C-CcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 6651 1111111100 00 0 01111111 2244555666554556788999999999999999
Q ss_pred HhCCCCeEEEcC-CCeeEEEEEEcC
Q 048438 150 VSGDKRFEVVFP-CHFAVVCFRVSP 173 (239)
Q Consensus 150 l~~~~g~~~~~~-~~~~iv~f~~~~ 173 (239)
|.+. |++++.. .++.+|.+.+.+
T Consensus 316 L~~~-G~~v~~ggTd~H~vlvd~~~ 339 (399)
T PF00464_consen 316 LQER-GFKVVTGGTDNHQVLVDLRS 339 (399)
T ss_dssp HHHT-T-EEGGGS-SSSEEEEEGGG
T ss_pred HhhC-CcEEEECCCCCCeEEEEecc
Confidence 9996 9999863 567788888765
No 141
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.18 E-value=2.8e-10 Score=99.65 Aligned_cols=151 Identities=15% Similarity=0.201 Sum_probs=103.8
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|+++|+++|+++++|++|+.+....+ + +. ++|+++.|++|+++++.+ .|+
T Consensus 151 tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~-----l-~~-g~Di~v~S~tK~l~g~gd~~gG~ 223 (403)
T PRK07503 151 TRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRP-----L-EL-GADLVVHSATKYLGGHGDITAGL 223 (403)
T ss_pred CcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-----h-hh-CCCEEEccccccccCCCceeEEE
Confidence 45667777889999999999999999999999999999986543221 1 12 489999999999987754 566
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc-C
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-P 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~-~ 161 (239)
++ .++++....... ......+-+...+..|..++ +.+.+..++++..++++++.+.|++.|.++.+. |
T Consensus 224 v~-~~~~l~~~l~~~--------~~~~~~g~~~s~~~a~l~l~--~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P 292 (403)
T PRK07503 224 VV-GGKALADRIRLE--------GLKDMTGAVMSPFDAFLLMR--GLKTLALRMDRHCASAQAVAEWLARHPAVELVHYP 292 (403)
T ss_pred EE-cCHHHHHHHHhh--------hHHhCcCCCCCHHHHHHHHc--CcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 65 455443332100 00001123334455555555 456777888888899999999999988876442 2
Q ss_pred -----C-----------CeeEEEEEEcC
Q 048438 162 -----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 162 -----~-----------~~~iv~f~~~~ 173 (239)
+ ..++++|.+++
T Consensus 293 ~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 320 (403)
T PRK07503 293 GLPSFAQHALAQRQMALPGGMIAFELKG 320 (403)
T ss_pred CCCCCccHHHHHHhCCCCCceEEEEECC
Confidence 1 13588888864
No 142
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.18 E-value=1.6e-10 Score=100.73 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=97.0
Q ss_pred ccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccc-cccCcc----ccc-cc----CC-CCCcceEEEc
Q 048438 4 IPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGS-ACIFPE----FRH-FI----DG-VEGADSFSLN 69 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~-~~~~~~----~~~-~~----~~-~~~~Ds~~~~ 69 (239)
.|++.+....+...|.. .++++|.++|++||+++|.|||+..+ +..+.+ +.. .. .. ...+|++++|
T Consensus 171 ~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S 250 (450)
T TIGR02618 171 IPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMS 250 (450)
T ss_pred cCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEe
Confidence 34333333333334776 56899999999999999999999883 343211 110 01 11 2359999999
Q ss_pred CcccCCCcccceEEEeeCcccccccccC---CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Q 048438 70 AHKWFFATLDCCCLWATNPEYLKNKATE---SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLF 146 (239)
Q Consensus 70 ~hK~l~~P~g~g~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l 146 (239)
+||-.++|.| |++..+++++....... ..+... +..-.+|...+ +..+++..-. +...++....+++|
T Consensus 251 ~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~eG~~t---yGgla~r~~~a--la~gL~e~~~---~~y~~~r~~~a~~L 321 (450)
T TIGR02618 251 GKKDCLVNIG-GFLCMNDDEMFQSAKELVVVFEGMPS---YGGLAGRDMEA--MAIGIREAVD---YEYIEHRVKQVRYL 321 (450)
T ss_pred eccCCCCCCc-eEEEeCCHHHHHHHHHHhhhcCCccc---cCchhhhhHHH--HHHHHHHhhh---HHHHHHHHHHHHHH
Confidence 9999999985 55665776555443210 001111 11111122222 2223333211 24556666779999
Q ss_pred HHHHhCCCCeEEEcCCCeeEEEEEEcC
Q 048438 147 ERLVSGDKRFEVVFPCHFAVVCFRVSP 173 (239)
Q Consensus 147 ~~~l~~~~g~~~~~~~~~~iv~f~~~~ 173 (239)
.+.|.+. |+.++.|+..++|.+....
T Consensus 322 a~~L~~~-Gvpv~~p~ggh~V~vda~~ 347 (450)
T TIGR02618 322 GDKLKAA-GVPIVEPVGGHAVFLDARR 347 (450)
T ss_pred HHHHHHC-CCcccCCCCcceEEEEhHH
Confidence 9999997 9999888889999887653
No 143
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.17 E-value=1.9e-10 Score=100.49 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=103.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|++...+|.+|.+.|+++|+++|+++|+++++|+||+.+...-+ ... ++|+++.+++|++++..+ .|.
T Consensus 151 tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~~----l~~---GaDi~v~S~tK~~~g~~~~~gG~ 223 (394)
T PRK07050 151 TRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFKP----FEH---GVDISVQALTKYQSGGSDVLMGA 223 (394)
T ss_pred CeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccCH----HHc---CCeEEEEECCceecCCCCeeEEE
Confidence 45777777888999999999999999999999999999988754222 111 489999999999987654 455
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
++++++++...... +....|--..+...|.+++ |.+.+..+++++++.+.++.+.|++.|++.-+..|
T Consensus 224 v~~~~~~~~~~~~~----------~~~~~G~~~~~~~a~l~lr--~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p 291 (394)
T PRK07050 224 TITADAELHAKLKL----------ARMRLGIGVSADDCSLVLR--GLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHP 291 (394)
T ss_pred EEECCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 66655544332211 0101121223444565555 34566778999999999999999998887644311
Q ss_pred -----------------CeeEEEEEEcC
Q 048438 163 -----------------HFAVVCFRVSP 173 (239)
Q Consensus 163 -----------------~~~iv~f~~~~ 173 (239)
..++++|.+.+
T Consensus 292 ~l~~~p~~~~~~~~~~~~g~~~s~~l~~ 319 (394)
T PRK07050 292 ALPDCPGHAFWMRDFTGAGGLFSVVFDE 319 (394)
T ss_pred CCCCCccHHHHHHhCCCCceEEEEEECC
Confidence 13588888865
No 144
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.16 E-value=4e-10 Score=95.05 Aligned_cols=156 Identities=14% Similarity=0.120 Sum_probs=108.0
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCL 83 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l 83 (239)
+|-+| .+|.+..-...|++++.+||++.|++|.+|.||-+|.+..-.+. .-++.||+++.+.||.|.+|.| |++
T Consensus 166 kPK~i--i~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p---~P~~~AdvVTtTTHKTlrGPrG-G~I 239 (413)
T COG0112 166 KPKLI--IAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHP---NPLPHADVVTTTTHKTLRGPRG-GII 239 (413)
T ss_pred CCCEE--EECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCC---CCCCccceEeCCcccCCCCCCc-eEE
Confidence 35544 35777777889999999999999999999999988876554332 2344599999999999999997 566
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCCC-ChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC-
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRSF-RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP- 161 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~- 161 (239)
+.++.++....... . . ...+++-.. ...+...+++....-++++..++..++|+.|.+.|.+. |++++..
T Consensus 240 l~~~eel~kkin~a---V---F-Pg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGg 311 (413)
T COG0112 240 LTNDEELAKKINSA---V---F-PGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGG 311 (413)
T ss_pred EeccHHHHHHhhhh---c---C-CccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCC
Confidence 66554444433210 0 0 122222221 22333445555555688888999999999999999985 9999863
Q ss_pred CCeeEEEEEEcC
Q 048438 162 CHFAVVCFRVSP 173 (239)
Q Consensus 162 ~~~~iv~f~~~~ 173 (239)
.+..++.+.+.+
T Consensus 312 TdnHl~lVDl~~ 323 (413)
T COG0112 312 TDNHLVLVDLRS 323 (413)
T ss_pred ccceEEEEEccc
Confidence 455666666653
No 145
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.14 E-value=1.4e-09 Score=94.63 Aligned_cols=153 Identities=16% Similarity=0.102 Sum_probs=91.6
Q ss_pred CCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCccccccc
Q 048438 15 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNK 94 (239)
Q Consensus 15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~~ 94 (239)
+.+|...|+++|.++|+++|+++++|+||+.|....... +... ++|+++++.+|++.++.| |+++..+++.....
T Consensus 129 ~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~---~g~~-g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~~~~~ 203 (379)
T PRK11658 129 HYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKGRH---IGAR-GTAIFSFHAIKNITCAEG-GLVVTDDDELADRL 203 (379)
T ss_pred CCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECCee---cCCC-CCEEEeCCCCCcCcccCc-eEEEECCHHHHHHH
Confidence 358999999999999999999999999999775533211 2222 368899999999876543 44444444332211
Q ss_pred c--cCCCCccCCC---------Cc-eecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 95 A--TESKPVVDYK---------DW-QITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 95 ~--~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
. ...+...+.. .+ ....|..++...+-+++.....+++++..++..++++++.+.|++++...+..+.
T Consensus 204 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~ 283 (379)
T PRK11658 204 RSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPA 283 (379)
T ss_pred HHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCC
Confidence 1 0001000000 00 0112323333344455555556788999999999999999999987543332221
Q ss_pred C-----eeEEEEEEc
Q 048438 163 H-----FAVVCFRVS 172 (239)
Q Consensus 163 ~-----~~iv~f~~~ 172 (239)
. ..+.+++++
T Consensus 284 ~~~~~~~~~~~~~~~ 298 (379)
T PRK11658 284 WPHQHAWHLFIIRVD 298 (379)
T ss_pred CCCceeEEEEEEEEC
Confidence 1 235666664
No 146
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.14 E-value=9.6e-10 Score=95.64 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=104.2
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|.++.-+|.++.+.||++|+++||++|++++||++++.+...-+ ++ + ++|.++.|..|++.+..+ .|+
T Consensus 150 TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~p-----l~-~-GaDivv~S~tKy~~Gh~d~~~G~ 222 (395)
T PRK05967 150 TKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLYFRP-----LD-F-GVDISIHAATKYPSGHSDILLGT 222 (395)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCceecCh-----hH-c-CCCEEEEecccccCCCCCeeEEE
Confidence 56788888889999999999999999999999999999986533222 11 2 499999999999665322 444
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~~ 161 (239)
+. .++........ +....|....+...|..++ |.+.+.-|++++.+.+..+.+.|++.|.++ |..|
T Consensus 223 v~-~~~~~~~~l~~----------~~~~~G~~~~p~da~l~~r--gl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yP 289 (395)
T PRK05967 223 VS-ANEKCWPQLLE----------AHGTLGLCAGPDDTYQILR--GLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHP 289 (395)
T ss_pred EE-cCHHHHHHHHH----------HHHHcCCCCCHHHHHHHHc--CcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECC
Confidence 43 33322111100 0111233345566676655 667888999999999999999999998875 4433
Q ss_pred C----------------CeeEEEEEEcC
Q 048438 162 C----------------HFAVVCFRVSP 173 (239)
Q Consensus 162 ~----------------~~~iv~f~~~~ 173 (239)
. ..++++|.+++
T Consensus 290 gl~s~p~~~~~~~~~~g~gg~~sf~l~~ 317 (395)
T PRK05967 290 ALPSFPGHEIWKRDFSGASGIFSFVLAA 317 (395)
T ss_pred CCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 1 14699999974
No 147
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.13 E-value=1.6e-09 Score=94.88 Aligned_cols=151 Identities=17% Similarity=0.246 Sum_probs=103.2
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--c
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--C 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~ 80 (239)
+-+|++...+|.+|.+.|+++|+++|+++ |++++||.+|+.+....+ + +. ++|+++.|++|+++++.. .
T Consensus 150 tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~-----l-~~-g~Divv~S~sK~l~g~g~~~g 222 (400)
T PRK06234 150 TKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRP-----L-QL-GADVVVHSATKYLNGHGDVIA 222 (400)
T ss_pred CeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCc-----h-hh-CCcEEEeeccccccCCCCcee
Confidence 45777888899999999999999999997 999999999987644222 1 12 499999999999987753 4
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE-E
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV-V 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~-~ 159 (239)
|+++.+ +++....... ......+....+...|..++ +.+.+..++++..++++++.+.|++.|.+.- .
T Consensus 223 G~v~~~-~~~~~~l~~~--------~~~~~~g~~l~p~~a~l~~~--~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~ 291 (400)
T PRK06234 223 GFVVGK-EEFINQVKLF--------GIKDMTGSVIGPFEAFLIIR--GMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVY 291 (400)
T ss_pred EEEEec-HHHHHHHHHH--------HHHHhcCCCCCHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence 666653 3443322100 00000122333445555554 4456678888888999999999999887753 3
Q ss_pred cC-----C-----------CeeEEEEEEcC
Q 048438 160 FP-----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 160 ~~-----~-----------~~~iv~f~~~~ 173 (239)
.| | ..++++|.+++
T Consensus 292 ~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~ 321 (400)
T PRK06234 292 YPGLESFEYYELAKKQMSLPGAMISFELKG 321 (400)
T ss_pred CCCCCCCCcHHHHHHhCCCCCceEEEEecC
Confidence 32 1 13589999974
No 148
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.13 E-value=3.2e-09 Score=92.93 Aligned_cols=192 Identities=13% Similarity=0.067 Sum_probs=104.2
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g 79 (239)
+.+|++....+.+|.+.| +++|.++|++||+++++|.+|++.......+.....++ ..|.++++ |+++++. .
T Consensus 179 ~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~-~pd~~~~s--K~l~~g~~~ 255 (400)
T PTZ00125 179 VAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGV-KPDIVLLG--KALSGGLYP 255 (400)
T ss_pred eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCC-CCCEEEEc--ccccCCCcC
Confidence 456666666788999888 99999999999999999999864211110000002233 27888765 9998764 6
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CC
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KR 155 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g 155 (239)
+|+++.++ ++........ ...++ .+.+........+++.+..+++. ++..++.+++++.|++. +.
T Consensus 256 ig~v~~~~-~~~~~~~~~~------~~~t~-~~~~~~~~aa~~~l~~i~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~ 324 (400)
T PTZ00125 256 ISAVLAND-DVMLVIKPGE------HGSTY-GGNPLACAVAVEALEVLKEEKLA---ENAQRLGEVFRDGLKELLKKSPW 324 (400)
T ss_pred cEEEEEcH-HHHhhccCCC------CCCCC-CcCHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHhcCCC
Confidence 78777643 3333221100 00011 11122222223344444333333 34446677777777653 22
Q ss_pred eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
+..+ .+...++.+.++... ......+.++|.++|.++ .+ .+..++|++++...+
T Consensus 325 ~~~~-~~~g~~~~v~~~~~~---------------------~~~~~~~~~~l~~~Gv~v-~~---~~~~~lRi~~~~~~~ 378 (400)
T PTZ00125 325 VKEI-RGKGLLNAIVFDHSD---------------------GVNAWDLCLKLKENGLLA-KP---THDNIIRFAPPLVIT 378 (400)
T ss_pred eEEE-ecccEEEEEEEccCc---------------------chHHHHHHHHHHHCCeEE-ee---cCCCEEEEECCccCC
Confidence 2212 223345555554321 011235667777777554 32 245789999775554
Q ss_pred C
Q 048438 236 E 236 (239)
Q Consensus 236 ~ 236 (239)
.
T Consensus 379 ~ 379 (400)
T PTZ00125 379 K 379 (400)
T ss_pred H
Confidence 4
No 149
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.13 E-value=4.5e-09 Score=92.18 Aligned_cols=203 Identities=14% Similarity=0.088 Sum_probs=114.2
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|++....+++|.+.| +++|.++|++||+++++|.+|++..-..........++ ..|.++++ |+++++..
T Consensus 191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~-~~d~~t~s--K~l~~g~~ 267 (413)
T cd00610 191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGV-EPDIVTLG--KGLGGGLP 267 (413)
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCC-CCCeEEEc--ccccCccc
Confidence 4667777777888899888 99999999999999999999975311111000001222 26776654 99988777
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC-eEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR-FEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g-~~~ 158 (239)
+|+++.+ ++.+...... ..... .+. .+..........+++.+.. .+..++..++.+++.+.|+++.. ..+
T Consensus 268 ~g~~~~~-~~~~~~~~~~--~~~~~--~t~-~~~~~~~~a~~a~l~~l~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~ 338 (413)
T cd00610 268 LGAVLGR-EEIMDAFPAG--PGLHG--GTF-GGNPLACAAALAVLEVLEE---EGLLENAAELGEYLRERLRELAEKHPL 338 (413)
T ss_pred cEEEEEc-HHHHHhhccC--CCCCC--CCC-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 8887763 4443332000 00000 000 1111222333444555433 24556666888888888876421 111
Q ss_pred E--cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 159 V--FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 159 ~--~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
+ ......++.+.+.+.... ...+ ......+.+.|.++|..+... +...+|++++..+|+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~~-----------~~~~----~~~~~~~~~~l~~~gv~v~~~----~~~~lR~~~~~~~t~ 399 (413)
T cd00610 339 VGDVRGRGLMIGIELVKDRAT-----------KPPD----KELAAKIIKAALERGLLLRPS----GGNVIRLLPPLIITE 399 (413)
T ss_pred EEEeecCceEEEEEEecCCCc-----------CCcc----hHHHHHHHHHHHHCCeEEeec----CCCEEEEECCCcCCH
Confidence 1 123567888887653100 0000 122346777787776554432 246799998877765
Q ss_pred c
Q 048438 237 E 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 400 ~ 400 (413)
T cd00610 400 E 400 (413)
T ss_pred H
Confidence 4
No 150
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.13 E-value=1.7e-09 Score=92.80 Aligned_cols=186 Identities=14% Similarity=0.063 Sum_probs=112.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g 81 (239)
+-+|+++..+|.+|.+.|++++.++|+.+ ++++++|.+|+..... ..........+ .++++.+++|+++.| ..+|
T Consensus 143 ~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~-~~~~~~~~~~~-~~i~~~S~sK~~g~~G~r~G 220 (346)
T TIGR01141 143 PKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGE-PSTLPLLAEYP-NLIVLRTLSKAFGLAGLRIG 220 (346)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCC-ccHHHHHhhCC-CEEEEehhhHhhhchhhhce
Confidence 45677788899999999999999999887 9999999998732211 01111111222 346678999998544 3478
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
++++. ++.+....... ..+. ...+....+...+.. ..+++..++..++.+++.+.|++.+|+++.
T Consensus 221 ~~~~~-~~~~~~~~~~~------~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~- 286 (346)
T TIGR01141 221 YAIAN-AEIIDALNKVR------APFN------LSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKLPGLEVY- 286 (346)
T ss_pred eeecC-HHHHHHHHhcc------CCCC------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-
Confidence 88763 34433221100 0011 111222222222222 235667777888899999999988888854
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC-EeEEEEEec
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-IYAIRFATG 231 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-~~~lR~~~~ 231 (239)
++..+.+.|.++. . .+++.++|.++|....+.....+ ..++|++++
T Consensus 287 ~~~g~~~~~~~~~-~------------------------~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~ 333 (346)
T TIGR01141 287 PSDANFVLIRFPR-D------------------------ADALFEALLEKGIIVRDLNSYPGLPNCLRITVG 333 (346)
T ss_pred CCcCCEEEEecCC-C------------------------HHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC
Confidence 5556677777653 1 12566677777655443322212 578999965
No 151
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.13 E-value=2.3e-09 Score=91.49 Aligned_cols=186 Identities=15% Similarity=0.036 Sum_probs=110.1
Q ss_pred EEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438 7 FLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC 82 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~ 82 (239)
+|+++..+|.+|.+.| +++|+++|+++|+++++|.+|...... ......... ..-+.++.+++|+++.| ..+|+
T Consensus 128 ~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~-~~~~i~~~S~SK~~g~~G~R~G~ 205 (330)
T TIGR01140 128 VLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD-ASLAPQAAR-FPGLVVLRSLTKFFGLAGLRLGF 205 (330)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc-cchhhHhcc-CCCEEEEEecchhhcCchhhhhh
Confidence 5667778999999999 667788889999999999999754321 111111111 12568889999998745 44688
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENL-RHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~-~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
++.. ++++....... ..+. ...+....+.+.+....+ +...++..++.+++.+.|++.+.+++. +
T Consensus 206 i~~~-~~~~~~l~~~~------~~~~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~ 271 (330)
T TIGR01140 206 VVAH-PALLARLREAL------GPWT------VNGPARAAGRAALADTAWQAATRARLAAERARLAALLARLGGLEVV-G 271 (330)
T ss_pred eeCC-HHHHHHHHhcC------CCCC------chHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-C
Confidence 7764 34433322100 0011 112223333333322223 455667778888999999988556653 4
Q ss_pred CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecCCC
Q 048438 162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGATL 234 (239)
Q Consensus 162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~~ 234 (239)
+..+.+.+.+++ ...+.++|.+.|..+.+..... +..++|+++....
T Consensus 272 ~~~~f~~~~~~~--------------------------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~ 320 (330)
T TIGR01140 272 GTALFLLVRTPD--------------------------AAALHEALARRGILIRDFDNFPGLDPRYLRFALPTDE 320 (330)
T ss_pred CCCeEEEEEcCC--------------------------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHH
Confidence 444444443321 1256677777776655544443 3468999987644
No 152
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.12 E-value=5e-09 Score=91.67 Aligned_cols=190 Identities=13% Similarity=0.057 Sum_probs=111.7
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+.+|++....+.+|.+.| +++|.++|++||+++++|.+|++.......+.....++ ..|.+++ .|++++....
T Consensus 184 ~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~-~pDi~t~--sK~l~~G~~i 260 (398)
T PRK03244 184 TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGV-TPDVVTL--AKGLGGGLPI 260 (398)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCC-CCCEEEE--chhhhCCccc
Confidence 456666767889999888 89999999999999999999975211111000002233 3787765 6999866667
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
|.++.++ ++....... . ...++ .+.+........+++.+..+ +..++..++.++|.+.|+++ +..++.
T Consensus 261 g~~~~~~-~~~~~~~~~---~---~~~t~-~~~~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~-~~~~~~ 328 (398)
T PRK03244 261 GACLAFG-PAADLLTPG---L---HGSTF-GGNPVACAAALAVLDTIASE---GLLENAERLGEQLRAGIEAL-GHPLVD 328 (398)
T ss_pred EEEEEcH-HHHhhccCC---C---CcCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhc-CCCcee
Confidence 8888753 333222110 0 00111 11122223333344444333 34556668889999999875 332222
Q ss_pred C--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 161 P--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 161 ~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
. ...+++.+.++.. ....+.+++.++|.++.. .+..+||++++...|++
T Consensus 329 ~v~g~g~~~~i~~~~~------------------------~~~~~~~~l~~~Gv~~~~----~~~~~iR~~p~~~~t~~ 379 (398)
T PRK03244 329 HVRGRGLLLGIVLTAP------------------------VAKAVEAAAREAGFLVNA----VAPDVIRLAPPLIITDA 379 (398)
T ss_pred eEeeccEEEEEEEecc------------------------HHHHHHHHHHHCCeEEee----cCCCEEEEECCCcCCHH
Confidence 1 2455677776431 123677788888866533 23478999987766654
No 153
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.11 E-value=9.2e-10 Score=97.85 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=91.5
Q ss_pred ccEEEEEecCCCCcc-c---ccChhHHHHHHHHhCCEEEEecccccc-cccCcc----ccc-ccCC-----CCCcceEEE
Q 048438 4 IPLFLCATIGTTAIT-A---VDPLKPLCDVAKQFGIWVHVDAAYAGS-ACIFPE----FRH-FIDG-----VEGADSFSL 68 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G-~---i~pl~~i~~i~~~~gi~lhvD~A~~~~-~~~~~~----~~~-~~~~-----~~~~Ds~~~ 68 (239)
.+-+|+++.-+|.+| . ..++++|+++|++||++++.|+||... ++...+ ++. .+.. ...+|++++
T Consensus 177 ~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~ 256 (460)
T PRK13238 177 NVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTM 256 (460)
T ss_pred ceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEE
Confidence 355777888888887 4 445789999999999999999998653 221110 110 0100 124999999
Q ss_pred cCcccCCCcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCC-hHHHHHHHHH-hCHHHHHHHHHHHHHHHHHH
Q 048438 69 NAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFR-SLKLWFVIRN-YGMENLRHFLRSHVNMARLF 146 (239)
Q Consensus 69 ~~hK~l~~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~g~~g~~~~~~~~~~la~~l 146 (239)
++||.+++|.| |++..++++........ .+....+...++.... ..++..+++. +..+ ..++..+..++|
T Consensus 257 Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~---~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~----~~~~~~~~~~~l 328 (460)
T PRK13238 257 SAKKDAMVNIG-GLLCFRDEDLFTECRTL---CILYEGFPTYGGLAGRDMEALAVGLYEGMDED----YLAYRIGQVEYL 328 (460)
T ss_pred ecccCCCCcce-eEEEcChHHHHHHhhhc---ccccCCcccccCcHHHHHHHHHhhHHHhhChH----HHHHHHHHHHHH
Confidence 99999999986 77777654444433211 0000111112221111 2222223332 2222 333333456889
Q ss_pred HHHHhCCCCeEEEcCCCeeEEEEEE
Q 048438 147 ERLVSGDKRFEVVFPCHFAVVCFRV 171 (239)
Q Consensus 147 ~~~l~~~~g~~~~~~~~~~iv~f~~ 171 (239)
.+.|.+. |+.++.|....-|...+
T Consensus 329 ~~~L~~~-G~~~~~p~Gg~~v~~d~ 352 (460)
T PRK13238 329 GEGLEEA-GVPIQTPAGGHAVFVDA 352 (460)
T ss_pred HHHHHHC-CCCeEccCCceEEEEEc
Confidence 9999886 99988766544444444
No 154
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.11 E-value=5.4e-09 Score=92.06 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=99.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l 83 (239)
+-+|++...+|.+|.+.|+++|+++|+++|++++||++|+.+....+ . .. ++|+++.+++|+++++.. .|.+
T Consensus 143 t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~~~~-----l-~~-g~Divv~S~sK~l~g~G~~lGg~ 215 (418)
T TIGR01326 143 TKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYLCRP-----I-DH-GADIVVHSATKYIGGHGTAIGGV 215 (418)
T ss_pred CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhcCCc-----h-hc-CCeEEEECccccccCCccceEEE
Confidence 44666777789999999999999999999999999999986633222 1 11 499999999999876532 4555
Q ss_pred EeeCcccccccccC---CCCccCCC------C-------------ceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHH
Q 048438 84 WATNPEYLKNKATE---SKPVVDYK------D-------------WQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVN 141 (239)
Q Consensus 84 ~~~~~~~l~~~~~~---~~~~~~~~------~-------------~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~ 141 (239)
++..+......... ........ . +....|-...+...|..++ |.+.+..|+++..+
T Consensus 216 v~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~~~--~l~tl~~R~~~~~~ 293 (418)
T TIGR01326 216 IVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLLLQ--GLETLSLRMERHVE 293 (418)
T ss_pred EEecccccccccccccccCCCCccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHC--CcccHHHHHHHHHH
Confidence 55332211110000 00000000 0 0000111122344454443 45667778888888
Q ss_pred HHHHHHHHHhCCCCeEEEc-C-----C------------CeeEEEEEEcC
Q 048438 142 MARLFERLVSGDKRFEVVF-P-----C------------HFAVVCFRVSP 173 (239)
Q Consensus 142 la~~l~~~l~~~~g~~~~~-~-----~------------~~~iv~f~~~~ 173 (239)
.+..+.+.|.+.|++..+. | | ..++++|.+++
T Consensus 294 ~a~~la~~L~~~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~ 343 (418)
T TIGR01326 294 NALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKG 343 (418)
T ss_pred HHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecC
Confidence 8999999999988886543 2 1 13599999875
No 155
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.11 E-value=2.4e-09 Score=93.19 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=86.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc--ccCCCcccceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~ 82 (239)
+-+|+.+ +.+|...|+++|.++|++||+++++|+||+.|.. .+. +. +......|+.++|+| |++..+.| |+
T Consensus 122 t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~-~~~-~~-~g~~~~~d~~~~S~~~~K~~~~~~G-G~ 194 (380)
T TIGR03588 122 PKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAE-YGG-KP-VGNCRYADATVFSFHPVKIITTAEG-GA 194 (380)
T ss_pred ceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCc-cCC-Ee-CCCccccceEEEecCCCCcccccCc-eE
Confidence 4455544 3579999999999999999999999999998865 321 11 111013599999998 99877644 44
Q ss_pred EEeeCccccccccc--CCCCccCC--------CCceec---CCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 83 LWATNPEYLKNKAT--ESKPVVDY--------KDWQIT---LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 83 l~~~~~~~l~~~~~--~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
++..++........ ..+...+. ..+..+ .|..+.--.+-+++.....+.++++.++..++++++.+.
T Consensus 195 v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~ 274 (380)
T TIGR03588 195 VTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRL 274 (380)
T ss_pred EEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544433221110 00000000 011111 111111111111211112345788888899999999999
Q ss_pred HhCCCCeEEEcC
Q 048438 150 VSGDKRFEVVFP 161 (239)
Q Consensus 150 l~~~~g~~~~~~ 161 (239)
|+.+++++++.+
T Consensus 275 L~~~~~~~~~~~ 286 (380)
T TIGR03588 275 LKDLPYFTPLTI 286 (380)
T ss_pred hcCCCCccCCCC
Confidence 999887775543
No 156
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.09 E-value=3e-09 Score=91.36 Aligned_cols=187 Identities=16% Similarity=0.092 Sum_probs=101.5
Q ss_pred EEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438 6 LFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 82 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~ 82 (239)
-+|++ .|++++|.+ .||++|+++|+++|++++||.||+.+......... .... ++|.++.+++|++.++. .|+
T Consensus 138 ~lIii-tg~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~-~~~~-~~divv~s~SKalaG~r-~G~ 213 (346)
T TIGR03576 138 SLVVI-TGSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPP-ALDL-GADLVVTSTDKLMDGPR-GGL 213 (346)
T ss_pred eEEEE-ECCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCC-HHHc-CCcEEEeccchhccccc-eEE
Confidence 34444 467889998 88999999999999999999999876542111111 1111 37999999999886776 366
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
++. +++.+....... ..+.+. .......+...+|+.+.. +.+.+...+..+++.+.++. +.+. ++
T Consensus 214 v~~-~~~li~~l~~~~------~~~~~s-~~~~~~~aa~~aL~~~~~---~~~~~~l~~r~~~~~~~l~~---~~~~-~~ 278 (346)
T TIGR03576 214 LAG-RKELVDKIKSVG------EQFGLE-AQAPLLAAVVRALEEFEL---SRIRDAFKRKEEVYLRLFDK---LNVE-RT 278 (346)
T ss_pred EEe-CHHHHHHHHHhh------cCcccC-ccHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHh---CCCC-cC
Confidence 654 344333221100 011111 111112222334443322 33344455666666666653 3332 34
Q ss_pred CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-CEeEEEEEecCCC
Q 048438 163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-GIYAIRFATGATL 234 (239)
Q Consensus 163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-g~~~lR~~~~~~~ 234 (239)
..|-+.+++++.. + .+ ...+.|.+.|...++..... ...++|+++..+.
T Consensus 279 ~~~f~~~~~~~~~----------------~----~~---~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~ 328 (346)
T TIGR03576 279 PTGFVIKGVEEEK----------------L----IE---IGLDLLRNYGIITITAVGMPGASKTLRFDLAAKD 328 (346)
T ss_pred CCeEEEEeCCCCC----------------H----HH---HHHHHHHhCCEEEeCCcccCCCCCeEEEEEecCh
Confidence 5665555553210 0 11 23344555666655433332 2568999998765
No 157
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.08 E-value=5.7e-09 Score=89.99 Aligned_cols=190 Identities=10% Similarity=0.014 Sum_probs=110.6
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~ 80 (239)
+-+|+.+.-+|.||.+.+ +++|+++|+++++++++|.++..........-..+...+ .++++.|++|+++.| .-+
T Consensus 143 ~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~Ri 221 (356)
T PRK08056 143 LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNP-HLWVLRSLTKFYAIPGLRL 221 (356)
T ss_pred CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCC-CEEEEEechhhccCcchhh
Confidence 346667888999999998 888999999999999999998543211100001122222 568889999998744 447
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
|+++..++..+....... ..+. ...+....+...+ +.+-.++..++..+..+++.+.|++++++++.
T Consensus 222 G~~v~~~~~~~~~l~~~~------~~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 289 (356)
T PRK08056 222 GYLVNSDDAAVARMRRQQ------MPWS------INAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCALPLLTVW 289 (356)
T ss_pred eeeecCCHHHHHHHHHhC------CCCc------hhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc
Confidence 777654333332221100 0011 1112222222222 22223444555667788899999888788765
Q ss_pred cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC--EeEEEEEecCC
Q 048438 160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG--IYAIRFATGAT 233 (239)
Q Consensus 160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g--~~~lR~~~~~~ 233 (239)
++..+-+.++++.. ...+.+.|.++|..........+ ..++|+++..+
T Consensus 290 -~~~~~~~~~~~~~~-------------------------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~~ 339 (356)
T PRK08056 290 -PGRANYLFLRCERP-------------------------DIDLQRALLTQRILIRSCANYPGLDSRYYRVAIRSA 339 (356)
T ss_pred -CCCCcEEEEEcCCC-------------------------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEcCH
Confidence 55555555554321 11466677777766554443322 35899998753
No 158
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.08 E-value=5.3e-09 Score=91.31 Aligned_cols=193 Identities=12% Similarity=0.084 Sum_probs=108.6
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-- 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-- 79 (239)
+-+|+++..+|.+|.+.| +++|+++|+++++++++|.+++.....-.............++++.+++|.++.| |
T Consensus 167 ~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-GlR 245 (391)
T PRK08361 167 TRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMT-GWR 245 (391)
T ss_pred cEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCc-Hhh
Confidence 345667778999999999 8899999999999999999986543211111111111112578889999987655 6
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--C--HHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--G--MENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g--~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
+|+++.. ++.+...... ..+.... ...+....+...+ + .+.+++..+...+..+.+.+.|++.++
T Consensus 246 iG~~~~~-~~~~~~~~~~-------~~~~~~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 314 (391)
T PRK08361 246 LGFVIAP-EQVIKDMIKL-------HAYIIGN---VASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPH 314 (391)
T ss_pred hhhhccC-HHHHHHHHHH-------HhhhccC---CChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7777763 3333322100 0000000 0112122222222 1 124556666667888889999998878
Q ss_pred eEEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438 156 FEVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG 231 (239)
Q Consensus 156 ~~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~ 231 (239)
+++.. ++.+. +..++++... + ...+.+.|.+ .|..+...... .+..++|+++.
T Consensus 315 ~~~~~-p~g~~~~~~~l~~~~~---------------~-------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~ 371 (391)
T PRK08361 315 IKVFE-PKGAFYVFANIDETGM---------------S-------SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA 371 (391)
T ss_pred CeecC-CCEEEEEEEECCCCCC---------------C-------HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec
Confidence 87654 44443 4445543211 0 1134455544 45544443332 24578999987
Q ss_pred C
Q 048438 232 A 232 (239)
Q Consensus 232 ~ 232 (239)
.
T Consensus 372 ~ 372 (391)
T PRK08361 372 T 372 (391)
T ss_pred C
Confidence 4
No 159
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.08 E-value=1.2e-11 Score=103.26 Aligned_cols=148 Identities=19% Similarity=0.150 Sum_probs=86.0
Q ss_pred cEEEEEecCCCCc--cccc---ChhHHHHHHHHhCCEEEEecccccccccCc--ccccccCCCCCcceEEEcCcccCCCc
Q 048438 5 PLFLCATIGTTAI--TAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIFP--EFRHFIDGVEGADSFSLNAHKWFFAT 77 (239)
Q Consensus 5 p~~vv~t~gtt~~--G~i~---pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~~~~~~~~~Ds~~~~~hK~l~~P 77 (239)
+..+|....+|+. |.+- .|++|.++||+||+++|+|||.-+.++... ..+... ..+|+++++++|.+++|
T Consensus 124 ~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~---~~~D~v~~~~tK~~g~~ 200 (290)
T PF01212_consen 124 QPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA---AGADSVSFGGTKNGGAP 200 (290)
T ss_dssp GEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH---TTSSEEEEETTSTT-SS
T ss_pred CccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh---hhCCEEEEEEEcccccc
Confidence 4455556666666 8755 567788889999999999999765544211 112223 35999999999999998
Q ss_pred ccceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHH---H--HHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438 78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKL---W--FVIRNYGMENLRHFLRSHVNMARLFERLVS 151 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~--~~l~~~g~~g~~~~~~~~~~la~~l~~~l~ 151 (239)
.|. +++.+++++...... ...+.++.+ .+.+.. + .++.. .+....+.++.+++++++.+.|+
T Consensus 201 ~Ga--vl~~~~~~i~~~~~~--------~k~~gg~~~~~G~~~a~~~~~~~~l~~--l~~~~~~~~~~~~~A~~La~~l~ 268 (290)
T PF01212_consen 201 GGA--VLAGNKEFIAKARRQ--------RKRLGGGMRQAGVLAAAELYQFAALRA--LELWLERARHANAMAKRLAAGLE 268 (290)
T ss_dssp SEE--EEEESHHHHHHHHHH--------HHHHTHHHHHTTHHHHHHHHHHHHHCH--EECSHHHHHCHHHHHHCHHHCHH
T ss_pred cce--EEEechHHHHHHHHH--------HHHhccCeeecceeeeechhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 653 444455655433210 000000001 111111 1 12221 12235677888999999999999
Q ss_pred CCCCeEEEcCCCeeEEE
Q 048438 152 GDKRFEVVFPCHFAVVC 168 (239)
Q Consensus 152 ~~~g~~~~~~~~~~iv~ 168 (239)
.+ ++.+..++++|.+.
T Consensus 269 ~~-~~~~~~~~~tn~~~ 284 (290)
T PF01212_consen 269 AL-GGVLPRPVETNQVF 284 (290)
T ss_dssp EE-CEEEETTSS-HHHH
T ss_pred HC-CCcccCCCCCcEEe
Confidence 97 66677777776543
No 160
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.06 E-value=8.2e-10 Score=95.87 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=86.8
Q ss_pred EEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcc-------eEEEcCcccCCCcccce
Q 048438 9 CATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGAD-------SFSLNAHKWFFATLDCC 81 (239)
Q Consensus 9 v~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~D-------s~~~~~hK~l~~P~g~g 81 (239)
++....|..|.+-|+++|+++||++++.++||.|||+..-..+-++... .+ ++| .++-|.||.|.+...++
T Consensus 172 vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~-~~-gad~~~~~~~~vvqS~HKtL~altQts 249 (417)
T PF01276_consen 172 VVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSAL-AL-GADRPNDPGIIVVQSTHKTLPALTQTS 249 (417)
T ss_dssp EEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCS-ST-TSS-CTSBEEEEEEEHHHHSSS-TT-E
T ss_pred EEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchh-hc-cCccccccceeeeechhhcccccccce
Confidence 3445567899999999999999999999999999998765443222222 12 588 99999999999999999
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHH----HHHhCHHHHHHHHHHHHHHHHHHHHHH---hCCC
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFV----IRNYGMENLRHFLRSHVNMARLFERLV---SGDK 154 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~~g~~~~~~~~~~la~~l~~~l---~~~~ 154 (239)
.+.+++...+....-. ..+..-.++. .+..+.++ .+.+....-++.+++..++++.+++.| .+++
T Consensus 250 ~lh~~~~~~v~~~~~~-------~~l~~~~TTS-PSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~ 321 (417)
T PF01276_consen 250 MLHVKGDRIVDHERVN-------EALSMHQTTS-PSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRLNDIW 321 (417)
T ss_dssp EEEEETCCCTTHHHHH-------HHHHHHS-SS---HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-
T ss_pred EEEecCCCcccHHHHH-------HHHHHHcCCC-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999765322111000 0000001111 12333333 234422222456677788888899988 6788
Q ss_pred CeEEEcCC
Q 048438 155 RFEVVFPC 162 (239)
Q Consensus 155 g~~~~~~~ 162 (239)
+|+++.+.
T Consensus 322 ~~~~~~~~ 329 (417)
T PF01276_consen 322 GFKVLGPE 329 (417)
T ss_dssp SSEESS-S
T ss_pred eEecCCcc
Confidence 88888764
No 161
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.05 E-value=3.3e-09 Score=92.15 Aligned_cols=196 Identities=13% Similarity=0.119 Sum_probs=111.0
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEeccccccccc-Ccccccc--cCCCCCcceEEEcCcccCCCc-
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACI-FPEFRHF--IDGVEGADSFSLNAHKWFFAT- 77 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~-~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P- 77 (239)
+-+|+++..+|.||.+.| +++|+++|+++|+++++|.+|+..... -...... +.....-.+++.+++|.++.|
T Consensus 159 ~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 238 (382)
T PRK06108 159 TRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTG 238 (382)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcc
Confidence 446677788899998765 688899999999999999998865432 1000000 111112347788999987543
Q ss_pred ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
..+|+++.. ++.+...... . .+...+...........++.. +.+.+++..++..++.+++.+.|++.++++
T Consensus 239 ~RiG~~~~~-~~~~~~~~~~----~---~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 309 (382)
T PRK06108 239 WRLGWLVAP-PALGQVLEKL----I---EYNTSCVAQFVQRAAVAALDE-GEDFVAELVARLRRSRDHLVDALRALPGVE 309 (382)
T ss_pred cceeeeeCC-HHHHHHHHHH----H---HhcccCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 347888863 3333322110 0 000000011111122222321 334456677778888899999998888888
Q ss_pred EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEEecC
Q 048438 158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFATGA 232 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~~~ 232 (239)
+..+.....+.+++++.. -...+.+.|.++ |......... .+..++|+++..
T Consensus 310 ~~~p~~g~~~~~~l~~~~-----------------------~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~ 364 (382)
T PRK06108 310 VAKPDGAMYAFFRIPGVT-----------------------DSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR 364 (382)
T ss_pred ccCCCeeEEEEEeCCCCC-----------------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 764433334555665321 012455666544 5544333322 245789999886
No 162
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.05 E-value=7.1e-09 Score=90.69 Aligned_cols=190 Identities=14% Similarity=0.075 Sum_probs=107.4
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-cc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g 79 (239)
+.+|++....+.+|.+.| +++|.++|++||+++++|.+|.+.......+.....++ ..|.+++ .|.++++ ..
T Consensus 187 ~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~-~pdi~~~--sK~lg~gg~~ 263 (396)
T PRK04073 187 TAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNV-TPDMYIL--GKALGGGVFP 263 (396)
T ss_pred eEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCC-CCCEEEe--cccccCCCCc
Confidence 467778888889999876 89999999999999999999985311110000012233 3787775 6998765 44
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
.|.+..+ ++......... ...+ .++.+.......++|+.+..+ +..++..++.+++.+.|+++ +...+
T Consensus 264 ig~~~~~-~~i~~~~~~~~------~~~t-~~~~~~~~aaa~aaL~~~~~~---~l~~~~~~~~~~l~~~L~~l-~~~~i 331 (396)
T PRK04073 264 ISCVAAN-RDILGVFTPGS------HGST-FGGNPLACAVSIAALEVLEEE---KLPERSLELGEYFKEQLKEI-DNPMI 331 (396)
T ss_pred ceEEEEc-HHHHhhhcCCC------CCCC-CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhh-cCCcc
Confidence 6777654 33333221100 0001 111122222223344433233 34455567889999999875 22222
Q ss_pred c--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 F--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
. ++..+++.+.++.. ...+.++|.++|.+. .+ .+..++|+++....|++
T Consensus 332 ~~~~~~g~~~~~~~~~~-------------------------~~~~~~~l~~~Gv~~-~~---~~~~~iRi~p~l~~t~e 382 (396)
T PRK04073 332 KEVRGRGLFIGVELNEP-------------------------ARPYCEALKEEGLLC-KE---THETVIRFAPPLVITKE 382 (396)
T ss_pred cceecceEEEEEEecch-------------------------HHHHHHHHHHCCeEE-ec---CCCCEEEEECCcccCHH
Confidence 2 23345666665421 125666777776553 32 24468999987666654
Q ss_pred C
Q 048438 238 R 238 (239)
Q Consensus 238 ~ 238 (239)
|
T Consensus 383 ~ 383 (396)
T PRK04073 383 E 383 (396)
T ss_pred H
Confidence 3
No 163
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.05 E-value=1.6e-08 Score=84.82 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=103.0
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEEe
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWA 85 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~ 85 (239)
+|.+-.-.|.-+.+.|+++|+++||++|++++||-..+.+++.-| ++. ++|.++-|..||+++. ...|.+++
T Consensus 150 avf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl~rP-----~~h--GADIVvHS~TK~igGhGt~iGG~iV 222 (426)
T COG2873 150 AVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYLCRP-----IEH--GADIVVHSATKYIGGHGTAIGGVIV 222 (426)
T ss_pred eEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcceecch-----hhc--CCCEEEEeecccccCCccccceEEE
Confidence 444555567789999999999999999999999999988766333 221 5999999999999875 33555666
Q ss_pred eCc--cccc-ccccC-CCCccCCCCceec---------------CCCC----CChHHHHHHHHHhCHHHHHHHHHHHHHH
Q 048438 86 TNP--EYLK-NKATE-SKPVVDYKDWQIT---------------LSRS----FRSLKLWFVIRNYGMENLRHFLRSHVNM 142 (239)
Q Consensus 86 ~~~--~~l~-~~~~~-~~~~~~~~~~~~~---------------~~~~----~~~~~~~~~l~~~g~~g~~~~~~~~~~l 142 (239)
... ++.. ...+. .....++....+. +-|. ..+...|..+ .|.|.+.-|++++.++
T Consensus 223 D~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~l--qGlETL~LRmerH~~N 300 (426)
T COG2873 223 DGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLL--QGLETLSLRMERHCEN 300 (426)
T ss_pred eCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHH--hchhhhHHHHHHHHHh
Confidence 322 2221 01100 0001111111100 0111 1223344333 4778888899999999
Q ss_pred HHHHHHHHhCCCCeEEEcCC------------------CeeEEEEEEcCC
Q 048438 143 ARLFERLVSGDKRFEVVFPC------------------HFAVVCFRVSPL 174 (239)
Q Consensus 143 a~~l~~~l~~~~g~~~~~~~------------------~~~iv~f~~~~~ 174 (239)
+..+.+.|++.|.+.-++-| ..++++|.+++.
T Consensus 301 A~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg 350 (426)
T COG2873 301 ALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGG 350 (426)
T ss_pred HHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecCh
Confidence 99999999999888766421 136999999874
No 164
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.02 E-value=1.4e-08 Score=95.86 Aligned_cols=195 Identities=15% Similarity=0.116 Sum_probs=124.5
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC-----Ccccce
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF-----ATLDCC 81 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~-----~P~g~g 81 (239)
+.++....+..|.+.|+++|++++|++|.+++|++=..+..+..+ -..+ ++|+++.+.++|+. +|. +|
T Consensus 196 ~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~-----Pge~-GaDi~vg~~q~fg~p~g~GGP~-aG 268 (939)
T TIGR00461 196 FGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTP-----PGHY-GADIVLGSSQRFGVPMGYGGPH-AA 268 (939)
T ss_pred EEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCC-----HHHc-CCcEEeeCCCccCCCCCCCCCc-ee
Confidence 455566678899999999999999999999999664444333322 1122 49999777777654 443 78
Q ss_pred EEEeeCcccccccccC-CCCccCCC---Ccee--c---CC-CCC--C-----h---HHHH--HHHHHhCHHHHHHHHHHH
Q 048438 82 CLWATNPEYLKNKATE-SKPVVDYK---DWQI--T---LS-RSF--R-----S---LKLW--FVIRNYGMENLRHFLRSH 139 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~-~~~~~~~~---~~~~--~---~~-~~~--~-----~---~~~~--~~l~~~g~~g~~~~~~~~ 139 (239)
++.+++ .+.+..... -+.+.|.. .+.+ + .. ||- . + +++. ..+..+|.+|++++.++.
T Consensus 269 ~~a~~~-~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~ 347 (939)
T TIGR00461 269 FFAVKD-EYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRI 347 (939)
T ss_pred eeeecH-hhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 888864 333322110 00001110 1111 1 11 221 1 1 1222 236778999999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE
Q 048438 140 VNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV 219 (239)
Q Consensus 140 ~~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 219 (239)
+.++.++.+.|.+ .|++++.++..+.+.++++... ..++.+++.++|.. +..
T Consensus 348 ~~~a~~l~~~L~~-~G~~~~~~~fF~~~~v~~~~~~------------------------~~~i~~~~~~~gi~-l~~-- 399 (939)
T TIGR00461 348 HSLTSILANGLEN-DPHELINKTWFDTLTVKVGNGI------------------------SSELLKAAEEFNIN-LRA-- 399 (939)
T ss_pred HHHHHHHHHHHHh-CCCcccCCCccceEEEEeCCCC------------------------HHHHHHHHHHCCCe-eee--
Confidence 9999999999998 6999998877788888874211 12566777777776 222
Q ss_pred ECCEeEEEEEecCCCCCcC
Q 048438 220 LGGIYAIRFATGATLTEER 238 (239)
Q Consensus 220 ~~g~~~lR~~~~~~~t~~~ 238 (239)
.....+++|++-.+|.+|
T Consensus 400 -~~~~~i~~s~~E~~t~~d 417 (939)
T TIGR00461 400 -VDTTTVGIALDETTTKAD 417 (939)
T ss_pred -cCCCEEEEEeecCCCHHH
Confidence 223478999988887664
No 165
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.02 E-value=2.8e-09 Score=93.26 Aligned_cols=154 Identities=13% Similarity=0.201 Sum_probs=92.6
Q ss_pred EEEEecCCCCc-ccc---cChhHHHHHHHHhCCEEEEecccccccc-cCc----ccccc-c----CC-CCCcceEEEcCc
Q 048438 7 FLCATIGTTAI-TAV---DPLKPLCDVAKQFGIWVHVDAAYAGSAC-IFP----EFRHF-I----DG-VEGADSFSLNAH 71 (239)
Q Consensus 7 ~vv~t~gtt~~-G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~-~~~----~~~~~-~----~~-~~~~Ds~~~~~h 71 (239)
+|+++...+.. |.. .++++|.++|++||+++|.|||+..+.. .+. .+... + .. ...+|.+++|+|
T Consensus 180 lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~ 259 (460)
T PRK13237 180 YICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGK 259 (460)
T ss_pred ceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCC
Confidence 34444455555 443 4789999999999999999999987733 221 11110 1 00 135999999999
Q ss_pred ccCCCcccceEEEeeCcccccccccC---CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438 72 KWFFATLDCCCLWATNPEYLKNKATE---SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFER 148 (239)
Q Consensus 72 K~l~~P~g~g~l~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~ 148 (239)
|.+.+|.| |++.++++++....... ..+...+ .-..+|...+++. .+...-. .+.+++..+.+++|.+
T Consensus 260 K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~eG~~ty---gg~~grd~~alAv--gl~E~~~---~~y~~~ri~~~~~l~~ 330 (460)
T PRK13237 260 KDCLVNIG-GFLAMNDEELFDEAKELVVVYEGMPSY---GGMAGRDMEAMAI--GIEESVQ---YEYIEHRVGQVRYLGE 330 (460)
T ss_pred CCCCCCCc-eEEEECCHHHHHHHHHhccccCCCcCC---CChhhhHHHHHHh--HHHhhch---HHHHHHHHHHHHHHHH
Confidence 99999874 66777776554433211 0111111 1111344433332 2332111 2666777788999999
Q ss_pred HHhCCCCeEEEcCCCeeEEEEE
Q 048438 149 LVSGDKRFEVVFPCHFAVVCFR 170 (239)
Q Consensus 149 ~l~~~~g~~~~~~~~~~iv~f~ 170 (239)
.|.+. |+.++.|....-|.+.
T Consensus 331 ~L~~~-Gvpv~~p~ggH~v~vd 351 (460)
T PRK13237 331 KLLAA-GVPIVEPVGGHAVFLD 351 (460)
T ss_pred HHHHC-CCceecCCCceEEEEE
Confidence 99885 9999877554444443
No 166
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.02 E-value=1.8e-08 Score=88.26 Aligned_cols=191 Identities=12% Similarity=0.069 Sum_probs=108.7
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcc-cccccCCCCCcceEEEcCcccCCCcc-
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPE-FRHFIDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~-~~~~~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
+.+|++....+.+|.+.| +++|.++|++||+++++|.+|++. -.... +.....++ ..|.++++ |++.+-.
T Consensus 188 ~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~-g~~g~~~~~~~~g~-~~D~~~~~--K~l~gg~~ 263 (401)
T PRK00854 188 TVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGL-GRTGKLLAEEHEGI-EADVTLIG--KALSGGFY 263 (401)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC-CCCchHhHHhhcCC-CCCEEEec--ccccCCcc
Confidence 467888888899999887 999999999999999999999732 11111 10012233 37888875 9987542
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
..|.+..+ ++.+....... ...++ ++.+........+|+.+.. ++..++..++++++.+.|++. +...
T Consensus 264 ~ig~v~~~-~~~~~~l~~~~------~~~t~-~~~~~~~aa~~a~L~~l~~---~~~~~~~~~~~~~l~~~L~~~-~~~~ 331 (401)
T PRK00854 264 PVSAVLSN-SEVLGVLKPGQ------HGSTF-GGNPLACAVARAALKVLTE---EGMIENAAEMGAYFLEGLRSI-RSNI 331 (401)
T ss_pred CeEEEEEc-HHHHhcccCCC------CCCCC-CcCHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHhh-ccCc
Confidence 35555553 33332221100 00011 1112222333334444322 224566678889999999876 3222
Q ss_pred Ec--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 159 VF--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 159 ~~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
+. .+...++.|.+.+.. .....+.+.|.++|... . ..+..++|++++...|+
T Consensus 332 ~~~~~g~g~~~~i~~~~~~----------------------~~~~~~~~~L~~~GV~v-~---~~~~~~lR~~p~~~~t~ 385 (401)
T PRK00854 332 VREVRGRGLMLAVELEPEA----------------------GGARQYCEALKERGLLA-K---DTHDHTIRLAPPLVITR 385 (401)
T ss_pred eEEEeccceEEEEEEecCc----------------------hhHHHHHHHHHHCCeEE-e---cCCCCEEEEeCCcccCH
Confidence 21 233456666654321 11236677777776553 2 22446899998776665
Q ss_pred c
Q 048438 237 E 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 386 e 386 (401)
T PRK00854 386 E 386 (401)
T ss_pred H
Confidence 4
No 167
>PRK05764 aspartate aminotransferase; Provisional
Probab=98.99 E-value=2.3e-08 Score=87.25 Aligned_cols=197 Identities=16% Similarity=0.097 Sum_probs=109.0
Q ss_pred EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcc---cccccCCCCCcceEEEcCcccCCCccc
Q 048438 6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPE---FRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~---~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
-+|+++.-+|.+|.+.| +++|+++|++||+++++|.+|+.....-.. ......+...-+.+..++.|.++.| |
T Consensus 166 ~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~-G 244 (393)
T PRK05764 166 KALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMT-G 244 (393)
T ss_pred eEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCc-c
Confidence 35566777889999855 889999999999999999998754321111 1111112223567888999998655 4
Q ss_pred --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
+|.++. +++++...... ..........+..+.+.+.+ ..+.+++..++..+..+++.+.|++.+|
T Consensus 245 ~RiG~i~~-~~~~~~~~~~~----------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 313 (393)
T PRK05764 245 WRLGYAAG-PKELIKAMSKL----------QSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEIPG 313 (393)
T ss_pred ceeEEEec-CHHHHHHHHHH----------HhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 566664 34433322110 00000011123333333333 2344455566667788889999998878
Q ss_pred eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEECCEeEEEEEecC
Q 048438 156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
+++..+.....+.+.+++... .. ..-..++.+.+.+ .|..+.+........++|+++..
T Consensus 314 ~~~~~~~g~~~~~~~~~~~~~--------------~~----~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~~ 373 (393)
T PRK05764 314 LECPKPEGAFYVFPNVSKLLG--------------KS----ITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYAT 373 (393)
T ss_pred CcccCCCcceEEEEecccccc--------------cc----cCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEecC
Confidence 887644333344445543210 00 0001255556654 45554443333335789999875
No 168
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=98.95 E-value=1.8e-08 Score=87.55 Aligned_cols=150 Identities=18% Similarity=0.318 Sum_probs=101.8
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhC-CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFG-IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~g-i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g 81 (239)
+-+|.+-.-+|.+..+.||++|+++||++| ++++||.+++.+...-+ +. . +||+++.|+.|++.+... .|
T Consensus 141 t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~p-----L~-~-GaDivv~S~TKyl~Ghsdv~~G 213 (386)
T PF01053_consen 141 TKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNP-----LE-L-GADIVVHSATKYLSGHSDVMGG 213 (386)
T ss_dssp EEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-G-----GG-G-T-SEEEEETTTTTTTSSSE-EE
T ss_pred ceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeecc-----Cc-C-CceEEEeeccccccCCcceeeE
Confidence 457778888899999999999999999999 99999999987744222 11 1 499999999999986643 56
Q ss_pred EEEeeC-cccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EE
Q 048438 82 CLWATN-PEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VV 159 (239)
Q Consensus 82 ~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~ 159 (239)
++.++. ..+...... +....|....+...|..++ |.+.+.-|++++.+.|..+.+.|++.|.++ |.
T Consensus 214 ~vv~~~~~~~~~~l~~----------~~~~~G~~~~p~da~ll~r--gl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~ 281 (386)
T PF01053_consen 214 AVVVNGSSELYDRLRE----------FRRLLGATLSPFDAWLLLR--GLRTLPLRMERQNENAEALAEFLEEHPKVKRVY 281 (386)
T ss_dssp EEEESSHHHHHHHHHH----------HHHHHT-B--HHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEE
T ss_pred EEEECchhhhhhhhcc----------hhhhcCccchHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 666554 233222110 1111222334566666665 567788999999999999999999999987 44
Q ss_pred cC-----C-----------CeeEEEEEEcC
Q 048438 160 FP-----C-----------HFAVVCFRVSP 173 (239)
Q Consensus 160 ~~-----~-----------~~~iv~f~~~~ 173 (239)
.| | ..++++|.+++
T Consensus 282 yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~ 311 (386)
T PF01053_consen 282 YPGLPSHPQHELAKRQMSGGGGLLSFELKG 311 (386)
T ss_dssp ETTSTTSTTHHHHHHHCSSCTSEEEEEESS
T ss_pred EcccccccceeeeeecccccCceeEEEecc
Confidence 33 1 13699999987
No 169
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.95 E-value=3.6e-09 Score=93.59 Aligned_cols=82 Identities=11% Similarity=0.109 Sum_probs=56.5
Q ss_pred cEEEEEecCCCC--cc--cccChhHHHHHHHHhCCEEEEecccccc---------cccCcccccccCCCCCcceEEEcCc
Q 048438 5 PLFLCATIGTTA--IT--AVDPLKPLCDVAKQFGIWVHVDAAYAGS---------ACIFPEFRHFIDGVEGADSFSLNAH 71 (239)
Q Consensus 5 p~~vv~t~gtt~--~G--~i~pl~~i~~i~~~~gi~lhvD~A~~~~---------~~~~~~~~~~~~~~~~~Ds~~~~~h 71 (239)
+-+|+.++.++. .| .+.|+++|+++||+||++++||++.|.. ..+.. .. ... .++|++++|+|
T Consensus 212 T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~--~~-~~~-~GaDiv~fSg~ 287 (454)
T TIGR00474 212 TALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTV--QE-VIA-AGVDLVTFSGD 287 (454)
T ss_pred CEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCccc--cc-HhH-cCCCEEEecCc
Confidence 345566666654 56 5889999999999999999999864321 11110 00 111 25999999999
Q ss_pred ccCCCcccceEEEeeCccccc
Q 048438 72 KWFFATLDCCCLWATNPEYLK 92 (239)
Q Consensus 72 K~l~~P~g~g~l~~~~~~~l~ 92 (239)
||+++|. +|+++.++ +++.
T Consensus 288 K~LgGp~-~G~i~g~~-~~i~ 306 (454)
T TIGR00474 288 KLLGGPQ-AGIIVGKK-ELIE 306 (454)
T ss_pred cccCCCe-EEEEEECH-HHHH
Confidence 9999995 78888754 4443
No 170
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=98.95 E-value=7.1e-08 Score=84.56 Aligned_cols=193 Identities=11% Similarity=0.027 Sum_probs=105.8
Q ss_pred EEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438 6 LFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC 80 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~ 80 (239)
.+|++-...+++|.+.| +++|.++|++||+++++|.+|.+.......+.....++ ..|.++++ |.+.+. ..+
T Consensus 188 ~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~-~~di~~~g--K~l~~g~~~i 264 (401)
T TIGR01885 188 CAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENV-KPDIVLLG--KALSGGVYPV 264 (401)
T ss_pred EEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCC-CCCEEEee--ccccCCCCCc
Confidence 35555555667799888 99999999999999999999854211111000002233 37888775 998753 235
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
|+++.+ ++........ . ...+. .+.+........+++.+..+.+ .++..++++++.+.|+++ +..++.
T Consensus 265 g~v~~~-~~i~~~~~~~---~---~~~t~-~~~p~~~~aa~a~L~~i~~~~l---~~~~~~~~~~~~~~L~~l-~~~~~~ 332 (401)
T TIGR01885 265 SAVLAD-DDVMLTIKPG---E---HGSTY-GGNPLACAVAVAALEVLEEEKL---AENAEKLGEIFRDQLKKL-PKPIIT 332 (401)
T ss_pred EEEEEc-HHHHhhccCC---C---CCCCC-CCCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhc-cCCcee
Confidence 555553 3333222110 0 00111 1222333334445555543333 345668899999999886 323322
Q ss_pred --CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 161 --PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 161 --~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
.....+..+.++... . .....++.+.|.++|... .+ .+...+|++++...|++
T Consensus 333 ~~~g~g~~~~i~~~~~~----------------~----~~~~~~l~~~l~~~Gv~v-~~---~~~~~lRi~p~l~~t~~ 387 (401)
T TIGR01885 333 EVRGRGLLNAIVIDESK----------------T----GRTAWDLCLKLKEKGLLA-KP---THGNIIRLAPPLVITEE 387 (401)
T ss_pred EEeecCeeEEEEeccCc----------------c----hhHHHHHHHHHHhCCEEE-Ee---cCCCEEEEeCCccCCHH
Confidence 123345554554321 0 012346777887776554 32 24568999987555543
No 171
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.94 E-value=3.5e-08 Score=86.87 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=101.4
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-ceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-CCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-~g~l 83 (239)
+-+|++...++.++.+.|+++|+++||++|+++++|.+++.+.+.-+ ++ -+||.++.|..||++++.+ .|.+
T Consensus 148 Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~~~p-----l~--~GADIvv~S~TKy~~Ghsd~l~G~ 220 (432)
T PRK06702 148 TKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYLCQA-----FE--HGANIIVHSTTKYIDGHASSLGGI 220 (432)
T ss_pred CeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhhCCh-----hh--cCCCEEEEccccccCCCcceeceE
Confidence 34666777889999999999999999999999999999875433211 11 1499999999999988754 2222
Q ss_pred EeeCcc--cccccccC----CCCccC------C----------CCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHH
Q 048438 84 WATNPE--YLKNKATE----SKPVVD------Y----------KDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVN 141 (239)
Q Consensus 84 ~~~~~~--~l~~~~~~----~~~~~~------~----------~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~ 141 (239)
.+.... +....... ...... . ..+....+....+...|..++ |.+.+..++++..+
T Consensus 221 v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~r--gL~Tl~lR~~r~~~ 298 (432)
T PRK06702 221 VIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNI--GLETLHLRMERHSE 298 (432)
T ss_pred EEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHh--ccCcHHHHHHHHHH
Confidence 222111 11100000 000000 0 000001122344556665555 45678889999999
Q ss_pred HHHHHHHHHhCCCCeEEEcCC------------------CeeEEEEEEcC
Q 048438 142 MARLFERLVSGDKRFEVVFPC------------------HFAVVCFRVSP 173 (239)
Q Consensus 142 la~~l~~~l~~~~g~~~~~~~------------------~~~iv~f~~~~ 173 (239)
++..+.+.|++.|.++-+..| ..++++|.+++
T Consensus 299 Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~ 348 (432)
T PRK06702 299 NALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKG 348 (432)
T ss_pred HHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence 999999999999987644321 13699999974
No 172
>PRK07908 hypothetical protein; Provisional
Probab=98.93 E-value=3.8e-08 Score=84.62 Aligned_cols=183 Identities=16% Similarity=0.099 Sum_probs=108.7
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEE-cCcccCC-CcccceEE
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSL-NAHKWFF-ATLDCCCL 83 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~-~~hK~l~-~P~g~g~l 83 (239)
-+++++.-+|.||.+.|.++|.++|+ ++.++++|.+|+-.. ... ... +...+.-+++++ +++|.++ ...-+|++
T Consensus 141 ~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~~~-~~~-~~~-l~~~~~~~~i~i~S~SK~~~l~GlRiG~~ 216 (349)
T PRK07908 141 DLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFADAV-PGE-PES-LAGDDLPGVLVLRSLTKTWSLAGLRVGYA 216 (349)
T ss_pred CEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchhhc-cCC-ccc-cccccCCCEEEEeecccccCCccceeeee
Confidence 36667888999999999999999996 488999999986421 111 111 111122345555 9999765 22336888
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHH--H-HHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWF--V-IRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+. +++.+....... ..+. ..+..... . ++....+-+++..++..+..+++.+.|++. ++++..
T Consensus 217 ~~-~~~~~~~~~~~~------~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~ 282 (349)
T PRK07908 217 LG-APDVLARLTRGR------AHWP------VGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV-GARVVD 282 (349)
T ss_pred ec-CHHHHHHHHhcC------CCCC------ccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhC-CcEecc
Confidence 86 344443322100 0011 11111111 1 111122344566677778888899999887 888776
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecC
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGA 232 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~ 232 (239)
++..+.+.+++++. ..+.+.|.++|..+....... +..++|+++.+
T Consensus 283 p~~g~~~~~~~~~~--------------------------~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~~ 330 (349)
T PRK07908 283 PAAAPFVLVRVPDA--------------------------ELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVRP 330 (349)
T ss_pred CCCceEEEEECCcH--------------------------HHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeCC
Confidence 67777777776531 145556666666655444332 35799999864
No 173
>PRK10534 L-threonine aldolase; Provisional
Probab=98.93 E-value=1.4e-08 Score=86.63 Aligned_cols=178 Identities=16% Similarity=0.085 Sum_probs=96.6
Q ss_pred cEEEEEecCCCCcccccChhHH---HHHHHHhCCEEEEecccccccccC-c-ccccccCCCCCcceEEEcCcccCCCccc
Q 048438 5 PLFLCATIGTTAITAVDPLKPL---CDVAKQFGIWVHVDAAYAGSACIF-P-EFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i---~~i~~~~gi~lhvD~A~~~~~~~~-~-~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
+-+|++. ++.+|.+.|.++| +++|++|+++++||.||..+.... . ... .+. ...|.++.+++|.++.+
T Consensus 130 ~~lv~l~--np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~-~~~--~~~~~~~~s~SK~~~~~-- 202 (333)
T PRK10534 130 TRLLSLE--NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELK-EIT--QYCDSFTICLSKGLGTP-- 202 (333)
T ss_pred ceEEEEe--cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHH-HHH--hcCCEEEEEeEcCCCCc--
Confidence 3344443 4557999887665 567899999999999976432100 1 110 011 12577778999987766
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
.|.+.+.+++.+...... .. .+. .+-...++....++..+ +...+.+++..+.++++.+.|++. |+++.
T Consensus 203 ~G~~~~~~~~~i~~~~~~----~~--~~~--~~~~~~~~~~a~~~~~l--~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~ 271 (333)
T PRK10534 203 VGSLLVGNRDYIKRARRW----RK--MTG--GGMRQAGILAAAGLYAL--KHNVARLQEDHDNAAWLAEQLREA-GADVM 271 (333)
T ss_pred ccceEEcCHHHHHHHHHH----HH--HhC--CchhhHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhC-CCccC
Confidence 454344455554332210 00 000 00011111122222222 112344444555678899999986 88865
Q ss_pred cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438 160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG 231 (239)
Q Consensus 160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~ 231 (239)
++..|.+.+++++. + ...+.+.|.++|.+.... ..+|++.+
T Consensus 272 -~~~~nfv~~~~~~~----------------------~--~~~~~~~l~~~gi~v~~~------~~~rl~~~ 312 (333)
T PRK10534 272 -RQDTNMLFVRVGEE----------------------Q--AAALGEYMRERNVLINAS------PIVRLVTH 312 (333)
T ss_pred -CCCceEEEEECCch----------------------h--HHHHHHHHHHcCeeecCC------ceEEEEEE
Confidence 45788888887531 1 125566777777665332 24688764
No 174
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=98.91 E-value=4.9e-08 Score=84.71 Aligned_cols=189 Identities=12% Similarity=0.014 Sum_probs=104.4
Q ss_pred cEEEEEecCCCCccccc----ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVD----PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~----pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+-+|+.+...+.+|... ++++|.++|+++|+++++|.+|+..............++ ..|.++ ++|.+++...+
T Consensus 171 ~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~-~~d~~t--~sK~~~~G~ri 247 (379)
T TIGR00707 171 TAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGI-EPDIIT--LAKGLGGGVPI 247 (379)
T ss_pred eeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCC-CCCEEE--EcccccCCccc
Confidence 34566676666677543 389999999999999999999973211100000001122 256654 58999865668
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV- 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~- 159 (239)
|+++.. ++.+....... ....+ ....+.......+++.+... +..++..++.++++++|++. +.+..
T Consensus 248 G~~~~~-~~~~~~~~~~~----~~~~~---~~~~~~~~aa~aaL~~~~~~---~~~~~~~~~~~~~~~~l~~~-~~~~~~ 315 (379)
T TIGR00707 248 GATLAK-EEVAEAFTPGD----HGSTF---GGNPLACAAALAVLEVIEKE---RLLENVKEKGDYFKERLEEL-GKNYPN 315 (379)
T ss_pred EEEEEc-HHHHhhhcCCC----CCCCC---CCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH-HhhCCC
Confidence 887763 34433322100 00001 11122233344455544322 34556667888888887764 22211
Q ss_pred c--CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 F--PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~--~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
. ++..+++.+.+++. ...+.++|.++|..... .+..++|++++...|++
T Consensus 316 ~~~~~~g~~~~~~~~~~-------------------------~~~~~~~l~~~Gv~v~~----~~~~~lRi~~~~~~t~~ 366 (379)
T TIGR00707 316 KEVRGKGLMLGIELEAP-------------------------CKDIVKKALEKGLLVNC----AGPKVLRFLPPLIITKE 366 (379)
T ss_pred CccccCceEEEEEecCc-------------------------HHHHHHHHHHCCcEEee----CCCCEEEEECCCcCCHH
Confidence 1 12345666766431 13667777777766543 24468999987666654
No 175
>PLN02624 ornithine-delta-aminotransferase
Probab=98.90 E-value=1.5e-07 Score=84.20 Aligned_cols=196 Identities=10% Similarity=0.012 Sum_probs=105.7
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
...+|++....+++|.+.| +++|.++|++||+++++|.+|.+.......+.....++ ..|.++++ |.+++. .
T Consensus 224 ~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i-~pDiv~ls--K~lggG~~ 300 (474)
T PLN02624 224 RIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEV-RPDVVILG--KALGGGVI 300 (474)
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCC-CCCEEEec--ccccCCCC
Confidence 3556777777788999888 99999999999999999999974211111111012344 38988874 988765 3
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----C
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----K 154 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~ 154 (239)
.+|.++.+. +++....... ...++ ++.+.......++++.+..++ ..++..++.+++++.|+++ +
T Consensus 301 pigav~~~~-~i~~~~~~~~------~~~T~-~g~pl~~aaa~aaLe~l~~~~---l~~~~~~~~~~l~~~L~~l~~~~~ 369 (474)
T PLN02624 301 PVSAVLADK-DVMLCIKPGE------HGSTF-GGNPLASAVAMAALQVVQDEK---LAERSAKLGQELRDQLQKIQKQFP 369 (474)
T ss_pred cceeeeecH-HHHhHhccCC------cCCCC-CCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 567666643 3332221100 00011 122222233333454443333 3334456667777766553 2
Q ss_pred C-eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 155 R-FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 155 g-~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
. +.-+ .....++.+.+..... . ......+.+.|.++|.+.. + .+..+||+++...
T Consensus 370 ~~i~~v-rg~G~~~~i~l~~~~~---------------~----~~~a~~~~~~L~e~GV~v~-p---~~~~~lR~~p~l~ 425 (474)
T PLN02624 370 KLIKEV-RGRGLLNAVVLNSPKL---------------G----PVSAYDVCLKLKERGLLAK-P---THDTIIRLAPPLS 425 (474)
T ss_pred CceEEE-EeeEEEEEEEecCCCc---------------C----hHHHHHHHHHHHhCCeEEe-c---CCCCEEEEECCcc
Confidence 1 2111 1223355555532110 0 1223467777877775543 2 2567899997655
Q ss_pred CCCc
Q 048438 234 LTEE 237 (239)
Q Consensus 234 ~t~~ 237 (239)
.|++
T Consensus 426 ~t~e 429 (474)
T PLN02624 426 ISED 429 (474)
T ss_pred CCHH
Confidence 5543
No 176
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=98.88 E-value=3.9e-08 Score=84.78 Aligned_cols=194 Identities=18% Similarity=0.110 Sum_probs=114.6
Q ss_pred cEEEEEecCCCCcccccChhHHHHH---HHHhCCEEEEecccccccccCccc---ccccCCCCCcc-eEEEcCcccCCCc
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDV---AKQFGIWVHVDAAYAGSACIFPEF---RHFIDGVEGAD-SFSLNAHKWFFAT 77 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i---~~~~gi~lhvD~A~~~~~~~~~~~---~~~~~~~~~~D-s~~~~~hK~l~~P 77 (239)
+.+|+.+...+.||..-+.+++.++ |++||+++++|.+|+.....-... ...+.. ..+ .++.|+.|.++.|
T Consensus 149 ~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~g~~ 226 (363)
T PF00155_consen 149 PKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDE--DDNVIVVGSLSKSFGLP 226 (363)
T ss_dssp EEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTT--TSTEEEEEESTTTTTSG
T ss_pred cceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccc--cccceeeeecccccccc
Confidence 5677777778999998776555555 999999999999998765542211 111222 233 7888999998766
Q ss_pred c-cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 78 L-DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG--MENLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 78 ~-g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
. -.|++++ ++......... .............+...+..-+ .+-++++.++..+..+++.+.|++.
T Consensus 227 GlRvG~i~~-~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 295 (363)
T PF00155_consen 227 GLRVGYIVA-PPELIERLRRF---------QRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI- 295 (363)
T ss_dssp GGTEEEEEE-EHHHHHHHHHH---------HHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ccccccccc-hhhhhhhhhhc---------cccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-
Confidence 2 3677777 44443322210 0000010011111122222222 1255677788888999999999887
Q ss_pred CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCEeEEEEEecCC
Q 048438 155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
++.+..++ .+++.+...+. .....+.+.|.++ |....+........++|+++ +.
T Consensus 296 ~~~~~~~~-~~~~~~~~~~~-----------------------~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-a~ 350 (363)
T PF00155_consen 296 GITVLPPE-AGFFLWVRLDP-----------------------NDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-AS 350 (363)
T ss_dssp TSEEEHHS-BSSEEEEEESH-----------------------HHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG-GC
T ss_pred hhheeecc-CccEEEEEccc-----------------------chHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe-cc
Confidence 99988655 66666654431 1234677778777 76655544433467899998 44
Q ss_pred CCC
Q 048438 234 LTE 236 (239)
Q Consensus 234 ~t~ 236 (239)
.++
T Consensus 351 ~~~ 353 (363)
T PF00155_consen 351 HSE 353 (363)
T ss_dssp SCH
T ss_pred CCH
Confidence 443
No 177
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=98.88 E-value=1e-07 Score=82.16 Aligned_cols=189 Identities=11% Similarity=0.035 Sum_probs=109.6
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcc--eEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGAD--SFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~D--s~~~~~hK~l~~P-~ 78 (239)
+-+|+++.-+|.||.+.+ +.+|.++|++|++++++|.++.-....-. .......++..+ .+..|+.|.++.| .
T Consensus 142 ~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~gl~G~ 220 (354)
T PRK06358 142 IDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE-TISMINYLENFKNLIIIRAFTKFFAIPGL 220 (354)
T ss_pred CCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCcc-chhHHHhccCCCCEEEEEechhhccCcch
Confidence 445566777899999887 78888889999999999999864332111 001011111111 5677999998733 4
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
-+|+++..++.+........ ..+. ...+..+.+...+... -+++..+...+..+++.+.|++.++++
T Consensus 221 RiG~lv~~~~~~~~~~~~~~------~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~ 288 (354)
T PRK06358 221 RLGYGLTSNKNLAEKLLQMR------EPWS------INTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIK 288 (354)
T ss_pred hheeeecCCHHHHHHHHHhC------CCCc------chHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 47777654333322221100 0011 1122222333333322 235566666777888999998887877
Q ss_pred EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecCC
Q 048438 158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGAT 233 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~ 233 (239)
+. ++..+-+.+++++. ..+.+.|.++|.......... +..++|+++..+
T Consensus 289 ~~-~~~g~f~~~~~~~~--------------------------~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~~~ 339 (354)
T PRK06358 289 VY-KPSVNFIFFKLEKP--------------------------IDLRKELLKKGILIRSCSNYRGLDENYYRVAVKSR 339 (354)
T ss_pred Ec-CCcceEEEEEcCch--------------------------HHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeCCH
Confidence 65 45666555555421 256677777776655544442 346899998764
No 178
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.88 E-value=1e-08 Score=89.09 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=81.6
Q ss_pred ccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccc-cccCccc---------ccccCC-CCCcceEEEc
Q 048438 4 IPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGS-ACIFPEF---------RHFIDG-VEGADSFSLN 69 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~-~~~~~~~---------~~~~~~-~~~~Ds~~~~ 69 (239)
+++.......++.-|.. +.++++.++|++||+.+|+|||.-+. +..+.+. +..... ...+|++++|
T Consensus 184 i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~s 263 (467)
T TIGR02617 184 VPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMS 263 (467)
T ss_pred ceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEE
Confidence 34433333333445654 55788899999999999999998663 3321110 001100 1469999999
Q ss_pred CcccCCCcccceEEEeeCc---cccccccc---CCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHH
Q 048438 70 AHKWFFATLDCCCLWATNP---EYLKNKAT---ESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMA 143 (239)
Q Consensus 70 ~hK~l~~P~g~g~l~~~~~---~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la 143 (239)
+.|.+++|.|. ++..+++ +....... ...+...| .--.+|...+++ ..|+.. --++.+++.....
T Consensus 264 lsKglgApvGg-~Lag~d~~~~~l~~~~~~~~i~~EGf~tY---GGlagrd~ea~a--~Gl~e~---~~~~yl~~ri~qv 334 (467)
T TIGR02617 264 AKKDAMVPMGG-LLCFKDDSFFDVYTECRTLCVVQEGFPTY---GGLEGGAMERLA--VGLYDG---MNLDWLAYRINQV 334 (467)
T ss_pred cCCCCCCcccc-eEEecchhHHHHHHHHHhhcccccCCcCc---CchhHHHHHHHH--hhhhhc---ccHHHHHHHHHHH
Confidence 99999999874 4555554 22222111 00011111 111123333332 123322 1245666667788
Q ss_pred HHHHHHHhCCCCeEEEc
Q 048438 144 RLFERLVSGDKRFEVVF 160 (239)
Q Consensus 144 ~~l~~~l~~~~g~~~~~ 160 (239)
+||.++|.+. |+.++.
T Consensus 335 ~yl~~~L~~~-Gvpi~~ 350 (467)
T TIGR02617 335 QYLVNGLEEI-GVVCQQ 350 (467)
T ss_pred HHHHHHHHhC-CCcEEe
Confidence 8999999885 887765
No 179
>PRK05957 aspartate aminotransferase; Provisional
Probab=98.86 E-value=9.9e-08 Score=83.30 Aligned_cols=195 Identities=13% Similarity=0.083 Sum_probs=107.0
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
+-+|++++.+|.||.+.| +++|+++|+++|+++++|.+++-....-...... ..+...--+++.++.|.++ +.|
T Consensus 161 ~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G 239 (389)
T PRK05957 161 TRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYG-FAS 239 (389)
T ss_pred ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhcc-Ccc
Confidence 456777888999999988 8899999999999999999987432211000000 1011112356778899864 445
Q ss_pred --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
+|.+++. ++++....... .. +. .+. ..+....+...+ +.+-+++..++..+..+++.+.|+++++
T Consensus 240 lRiG~~~~~-~~~~~~~~~~~-~~-----~~--~~~--~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 308 (389)
T PRK05957 240 WRIGYMVIP-IHLLEAIKKIQ-DT-----IL--ICP--PVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQLQD 308 (389)
T ss_pred ceeEEEecC-HHHHHHHHHHH-hh-----cc--cCC--CcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7777763 33333221100 00 00 000 011112222222 2233556666667778888899988766
Q ss_pred eEEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438 156 FEVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG 231 (239)
Q Consensus 156 ~~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~ 231 (239)
+..+.+++.+. +.+++++. . + ...+.++|.+ .|..+.+.... .+..++|+++.
T Consensus 309 ~~~~~~~~gg~~~~~~~~~~-~--------------------~--~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~ 365 (389)
T PRK05957 309 RCTLHPANGAFYCFLKVNTD-L--------------------N--DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYG 365 (389)
T ss_pred CccccCCCeeEEEEEeCCCC-C--------------------C--hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEe
Confidence 43344555544 33455331 1 1 1255666654 45554443332 23468999987
Q ss_pred CCC
Q 048438 232 ATL 234 (239)
Q Consensus 232 ~~~ 234 (239)
.++
T Consensus 366 ~~~ 368 (389)
T PRK05957 366 ALQ 368 (389)
T ss_pred cCC
Confidence 653
No 180
>PRK06225 aspartate aminotransferase; Provisional
Probab=98.84 E-value=8e-08 Score=83.55 Aligned_cols=192 Identities=13% Similarity=0.086 Sum_probs=101.4
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-- 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-- 79 (239)
+-+|+++..+|.+|.+.+ +++|+++|+++|+++++|.++............ .. .....+..+++|+++ +.|
T Consensus 158 ~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~--~~~~i~~~s~SK~~g-~~G~R 233 (380)
T PRK06225 158 TRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAE-YA--PEHTVTSYSFSKIFG-MAGLR 233 (380)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhh-cC--CCCEEEEeechhhcC-Cccce
Confidence 345666677889999654 899999999999999999998532111100000 11 124566778899985 445
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
+|+++.. +..+....... . ..+. ............+.. ..+-+++..+...+..+.+.+.|++++++.+.
T Consensus 234 iG~i~~~-~~l~~~~~~~~---~--~~~~---~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 303 (380)
T PRK06225 234 IGAVVAT-PDLIEVVKSIV---I--NDLG---TNVIAQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLP 303 (380)
T ss_pred eEEEecC-HHHHHHHHHHH---h--cccC---CCHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCccc
Confidence 6888764 34433321100 0 0000 001111111122222 11122333333445667788888887775432
Q ss_pred -cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEEEecC
Q 048438 160 -FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRFATGA 232 (239)
Q Consensus 160 -~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~~~~~ 232 (239)
.++..+++.+.+++.+. + ...+.++|.++|........ ..+..++|+++..
T Consensus 304 ~~~~~g~~~~~~~~~~~~--------------------~--~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~ 358 (380)
T PRK06225 304 VYPSHGNMMVIDISEAGI--------------------D--PEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSI 358 (380)
T ss_pred cCCCCCeEEEEEcccccC--------------------C--HHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCC
Confidence 34556677776654211 0 12456666666654333211 1245689999765
No 181
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.84 E-value=1.8e-07 Score=82.64 Aligned_cols=200 Identities=13% Similarity=0.010 Sum_probs=107.7
Q ss_pred cEEEEEec-CCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATI-GTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~-gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
..+|++.- .....|.+-| +++|.++|++||+++++|.+|.+.-....-+.....++. .|.++++ |++++. .
T Consensus 200 iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~-pDi~~~~--K~l~gG~~ 276 (423)
T PRK05964 200 IAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVS-PDIMCLS--KGLTGGYL 276 (423)
T ss_pred EEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCC-CCeeeee--hhhhcCcc
Confidence 34455544 2445566554 999999999999999999998643111110000123443 8887765 999776 4
Q ss_pred cceEEEeeCcccccccccC-CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATE-SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
..|.++.+ ++........ ..... ....++ .+.+.......++++.+..+ +..++..++.+++.+.|+++.++.
T Consensus 277 p~~av~~~-~~i~~~~~~~~~~~~~-~~~~T~-~~np~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~~~ 350 (423)
T PRK05964 277 PLAATLCT-AEIFEAFYSDDRAKAF-MHSPSY-TANPLACAAANASLDLFEDE---PVLERVAALSAGLAEGLEPFRDLP 350 (423)
T ss_pred cceEEEEc-HHHHHhhhcCCccccc-ccCCCC-CcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHhhccCC
Confidence 67776664 3333221110 00000 000010 11122223333344444333 345666688888888887653333
Q ss_pred EEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 158 VVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 158 ~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
.+.+ ....++.+.+.+.. . ++....+.+.|.++|.+... . + ..+|+++...+|
T Consensus 351 ~i~~vrg~Gl~~~i~l~~~~----------------~----~~~~~~l~~~l~~~Gv~v~~-~---~-~~lR~~p~l~~t 405 (423)
T PRK05964 351 GVADVRVLGAIGAVELDRPV----------------L----ERDGPALRAFALERGVLLRP-L---G-NTIYLMPPYIIT 405 (423)
T ss_pred CeEEeecccEEEEEEeccCc----------------c----hhHHHHHHHHHHHCCeEEEe-c---C-CEEEEeCCcccC
Confidence 2222 23456677775421 0 12344677788888765432 1 2 479999887777
Q ss_pred CcC
Q 048438 236 EER 238 (239)
Q Consensus 236 ~~~ 238 (239)
++|
T Consensus 406 ~ed 408 (423)
T PRK05964 406 AEE 408 (423)
T ss_pred HHH
Confidence 654
No 182
>PRK04311 selenocysteine synthase; Provisional
Probab=98.84 E-value=1.8e-08 Score=89.39 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=57.5
Q ss_pred cEEEEEecCCCC--cc--cccChhHHHHHHHHhCCEEEEecccccccccCccc----ccccCC-C-CCcceEEEcCcccC
Q 048438 5 PLFLCATIGTTA--IT--AVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEF----RHFIDG-V-EGADSFSLNAHKWF 74 (239)
Q Consensus 5 p~~vv~t~gtt~--~G--~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~----~~~~~~-~-~~~Ds~~~~~hK~l 74 (239)
+-+|+.++.++. +| ...|+++|+++||+||++++||+++|.. .+...+ ...+.. + .++|++++|+|||+
T Consensus 217 TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l-~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~L 295 (464)
T PRK04311 217 TALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSL-VDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLL 295 (464)
T ss_pred CeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCccc-ccchhccCCCCCchhhHHhcCCcEEEecCcccc
Confidence 456667777764 55 5679999999999999999999964321 111000 001111 0 25999999999999
Q ss_pred CCcccceEEEeeCccccc
Q 048438 75 FATLDCCCLWATNPEYLK 92 (239)
Q Consensus 75 ~~P~g~g~l~~~~~~~l~ 92 (239)
++|. +|+++.+ ++++.
T Consensus 296 gGp~-~G~i~g~-~~li~ 311 (464)
T PRK04311 296 GGPQ-AGIIVGK-KELIA 311 (464)
T ss_pred cCCc-eEEEEEc-HHHHH
Confidence 9995 7888875 34543
No 183
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.83 E-value=2.7e-07 Score=77.43 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=113.3
Q ss_pred CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 82 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~ 82 (239)
++|-++| +|++......|...+.+||.+.|+++.+|-||-.|.+...... .-.+.||+++.+.||.|-+|.|.-+
T Consensus 188 frPk~ii--aG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vip---sPFey~DiVTTTTHKsLRGPRg~mI 262 (477)
T KOG2467|consen 188 FRPKLII--AGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIP---SPFEYCDIVTTTTHKSLRGPRGAMI 262 (477)
T ss_pred cCCcEEE--eccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCC---CcccccceeeccccccccCCcceeE
Confidence 4566554 5788888899999999999999999999999876644322111 1124599999999999999998655
Q ss_pred EEeeCcccccccccCCCCccCCC------C-ceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 83 LWATNPEYLKNKATESKPVVDYK------D-WQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~------~-~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
||-+...-..+.. .....+|+. - -.+++|-. ....++..+|+.-..-.+.+..++..++++.|.+.|.+.
T Consensus 263 FyRkGvk~~~~k~-g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~- 340 (477)
T KOG2467|consen 263 FYRKGVKSIKPKQ-GKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR- 340 (477)
T ss_pred EEeccCCcCCCCC-CCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 5533211122111 000111110 0 12233322 445666777887777788888889999999999999986
Q ss_pred CeEEEcC-CCeeEEEEEEcCCCc
Q 048438 155 RFEVVFP-CHFAVVCFRVSPLPV 176 (239)
Q Consensus 155 g~~~~~~-~~~~iv~f~~~~~~~ 176 (239)
|.+++.. .+..+|.+.+.+.++
T Consensus 341 Gy~lvtgGTDnHlvLvDLr~~G~ 363 (477)
T KOG2467|consen 341 GYKLVTGGTDNHLVLVDLRPKGV 363 (477)
T ss_pred CceEecCCccceEEEEeccccCC
Confidence 9998864 456788888887664
No 184
>PRK15029 arginine decarboxylase; Provisional
Probab=98.83 E-value=2.1e-08 Score=93.10 Aligned_cols=145 Identities=12% Similarity=0.068 Sum_probs=90.7
Q ss_pred CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccC----CCCCcc-eEEEcCcccC
Q 048438 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FID----GVEGAD-SFSLNAHKWF 74 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~----~~~~~D-s~~~~~hK~l 74 (239)
+.+|.+|++|. .|..|.+-++++|+++||++|+.+|||.|||+...+.+.++. .+. ...++| +++-|.||.|
T Consensus 310 ~~~~~avvlt~-PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL 388 (755)
T PRK15029 310 GQKPSYCVVTN-CTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL 388 (755)
T ss_pred ccCceEEEEEC-CCCcceeeCHHHHHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcc
Confidence 45676666554 567999999999999999999999999999987655554432 110 102588 8899999999
Q ss_pred CCcccceEEEeeCcc-cccccccCCCCccCCCCceecCCCCCChHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 75 FATLDCCCLWATNPE-YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI----RNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 75 ~~P~g~g~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
.+...++.+.+++.. ++....-. .. +..-.++ ..+..+.++| +.+....-++.+.+..+.+..+++.
T Consensus 389 ~alTQaS~LHv~~~~~~id~~r~~--~~-----l~~~qST-SPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~ 460 (755)
T PRK15029 389 NALSQASYIHVREGRGAINFSRFN--QA-----YMMHATT-SPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQA 460 (755)
T ss_pred cchhhhhhheeCCCccccCHHHHH--HH-----HHHHcCC-CcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999986431 22211000 00 0111111 1123333332 2222211244566677888888888
Q ss_pred HhCCCC
Q 048438 150 VSGDKR 155 (239)
Q Consensus 150 l~~~~g 155 (239)
|+++++
T Consensus 461 l~~~~~ 466 (755)
T PRK15029 461 MARLYK 466 (755)
T ss_pred HHhccc
Confidence 887755
No 185
>PRK07505 hypothetical protein; Provisional
Probab=98.82 E-value=1.8e-07 Score=82.03 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=54.0
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccc-cCcc-cccccCC--CCCcceEEEcCcccCCCcccce
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSAC-IFPE-FRHFIDG--VEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~-~~~~-~~~~~~~--~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
.+++++...+.+|.+.|+++|.++|++||+++++|.+|+.+.+ ..-. +.....+ ......++.++.|.++++ | |
T Consensus 181 ~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-G-g 258 (402)
T PRK07505 181 TVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-G-G 258 (402)
T ss_pred CEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-C-e
Confidence 4666777788899999999999999999999999999854211 1100 0000111 122456677999998755 3 5
Q ss_pred EEEeeCccc
Q 048438 82 CLWATNPEY 90 (239)
Q Consensus 82 ~l~~~~~~~ 90 (239)
++.+.+++.
T Consensus 259 ~~~~~~~~~ 267 (402)
T PRK07505 259 VIMLGDAEQ 267 (402)
T ss_pred EEEeCCHHH
Confidence 554444433
No 186
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=98.81 E-value=4.3e-07 Score=79.68 Aligned_cols=202 Identities=11% Similarity=0.035 Sum_probs=110.8
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-Ccc-eEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GAD-SFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~D-s~~~~~hK~l~~P-~ 78 (239)
+.+|+++..+|.+|.+.+ +++|.++|+++|+++++|.+++-....-+.+.. +..+. ... .++.|+.|.++.| .
T Consensus 170 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~~~pGl 248 (403)
T TIGR01265 170 TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIP-MASFASIVPVLSLGGISKRWVVPGW 248 (403)
T ss_pred ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccc-hhhhccCCcEEEEeecccccCCCcc
Confidence 456777788899999865 899999999999999999998754322111111 11111 112 3567999986666 3
Q ss_pred cceEEEeeCcc------cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 79 DCCCLWATNPE------YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 79 g~g~l~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
-+|++++.+++ ++..... ...... ....+....+..+++.....-+++..++..+..+++.+.|++
T Consensus 249 RiG~~v~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 320 (403)
T TIGR01265 249 RLGWIIIHDPHGIFRDTVLQGLKN-------LLQRIL-GPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD 320 (403)
T ss_pred eEEEEEEeCchhhhHHHHHHHHHH-------Hhhhhc-CCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47777764432 1111110 000000 001111122222333212234455566667777888899988
Q ss_pred CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEECCEeEEEEEec
Q 048438 153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLGGIYAIRFATG 231 (239)
Q Consensus 153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~ 231 (239)
.+|+++..|...+-+.++++.... .+.. + ...+.++|. +.|..+..........++|+++.
T Consensus 321 ~~~~~~~~p~~g~f~~~~~~~~~~--------------~~~~--~--~~~~~~~l~~~~gv~v~pg~~f~~~~~iRis~~ 382 (403)
T TIGR01265 321 IPGLVCPKPEGAMYLMVKLELELF--------------PEIK--D--DVDFCEKLVREESVICLPGSAFGLPNWVRITIT 382 (403)
T ss_pred CCCceecCCCceeEEEEecccccc--------------CCCC--C--HHHHHHHHHHhCCEEEeCccccCCCCeEEEEec
Confidence 778876555556666666653210 0000 0 124555544 45655555444444578999987
Q ss_pred CC
Q 048438 232 AT 233 (239)
Q Consensus 232 ~~ 233 (239)
.+
T Consensus 383 ~~ 384 (403)
T TIGR01265 383 VP 384 (403)
T ss_pred CC
Confidence 53
No 187
>PRK07324 transaminase; Validated
Probab=98.81 E-value=3.5e-07 Score=79.42 Aligned_cols=192 Identities=11% Similarity=0.085 Sum_probs=103.1
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~ 80 (239)
+-+|+.+..+|.||.+.+ +++|+++|++||+++++|.++...... ..........+ -...+.+++|.++.| .-+
T Consensus 154 ~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~-~~~~s~~~~~~-~~I~~~s~SK~~~~~G~Ri 231 (373)
T PRK07324 154 TKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDED-GSTPSIADLYE-KGISTNSMSKTYSLPGIRV 231 (373)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccC-CCCCChhhccC-CEEEEecchhhcCCcccee
Confidence 457778888999999988 899999999999999999998643221 10111111111 235567999987644 225
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHH-HHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GME-NLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
|.++. ++..+...... ......+. ..+.-+.+...+ ..+ -+++..+...+..+.+.+.|++.+++..
T Consensus 232 G~i~~-~~~li~~~~~~-------~~~~~~~~---~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 300 (373)
T PRK07324 232 GWIAA-NEEVIDILRKY-------RDYTMICA---GVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSY 300 (373)
T ss_pred EEEec-CHHHHHHHHHH-------hCcEEecC---ChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 77665 33333322110 00000000 112222222222 112 2333344445566777788887777776
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEECCEeEEEEEecC
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
+.|...+...+.++.. . + ...+.++|.+ .|....+........++|+++..
T Consensus 301 ~~p~gg~~~~i~~~~~-~---------------~-------~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~ 352 (373)
T PRK07324 301 VKPKAVSTSFVKLDVD-M---------------P-------SEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCC 352 (373)
T ss_pred ECCCceEEEEEEeCCC-C---------------C-------HHHHHHHHHHhcCEEEECccccCCCCeEEEEecC
Confidence 6554333334444321 1 0 1245556543 45555554444334689999765
No 188
>PRK07568 aspartate aminotransferase; Provisional
Probab=98.80 E-value=4.3e-07 Score=79.38 Aligned_cols=159 Identities=10% Similarity=0.056 Sum_probs=88.0
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++..+|.+|.+.+ +++|+++|+++|+++++|.+++.....-...... +.+...--.++.|++|.++.| .
T Consensus 163 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~ 242 (397)
T PRK07568 163 TKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGA 242 (397)
T ss_pred ceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCc
Confidence 346677778899999875 7889999999999999999987543211111111 111111125677999997643 3
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
-+|+++..+++.+....... ...+. ...+....+..+++. +.+-+++..+...+..+.+.+.|++.+++.+
T Consensus 243 R~G~~~~~~~~~~~~~~~~~-----~~~~~---~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 313 (397)
T PRK07568 243 RIGCLISKNKELIAAAMKLC-----QARLS---PPTLEQIGAAALLDT-PESYFDEVREEYKKRRDILYEELNKIPGVVC 313 (397)
T ss_pred ceEEEecCCHHHHHHHHHHh-----hccCC---CCcHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCcee
Confidence 46766654433332221000 00010 001111122222321 3344556666677788889999988777765
Q ss_pred EcCCCee-EEEEEEcC
Q 048438 159 VFPCHFA-VVCFRVSP 173 (239)
Q Consensus 159 ~~~~~~~-iv~f~~~~ 173 (239)
. +|..+ .+.++++.
T Consensus 314 ~-~p~g~~~~~~~l~~ 328 (397)
T PRK07568 314 E-KPKGAFYIIAKLPV 328 (397)
T ss_pred c-CCCcceEEEEecCC
Confidence 4 34444 34556643
No 189
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=98.78 E-value=2.1e-07 Score=80.20 Aligned_cols=183 Identities=14% Similarity=0.143 Sum_probs=100.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cceEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCCCL 83 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l 83 (239)
+-+|+++..+|.+|.+.|+++|.++|+++|+++++|++|+... . ..........+ --.+..+++|.++.|. -+|.+
T Consensus 159 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~-~-~~~~~~~~~~~-~vi~~~S~SK~~g~~GlRiG~~ 235 (361)
T PRK00950 159 TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA-E-YDYTPLALEYD-NLIIGRTFSKVFGLAGLRIGYG 235 (361)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-c-cchHHHHHhcC-CEEEEEeehHhhcCchhhcchh
Confidence 3456667889999999999999999999999999999996432 1 11111121111 1245678999876442 25555
Q ss_pred EeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 84 WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
+. .+.+........ ..+. ...+....++..+.. +-+++..++..++.+++.+.|. +++ .++
T Consensus 236 ~~-~~~~~~~~~~~~------~~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~----~~~-~~~ 297 (361)
T PRK00950 236 FV-PEWLIDYYMRAK------TPFS------LTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP----FKV-YPS 297 (361)
T ss_pred cC-CHHHHHHHHHhc------CCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC----eeE-CCC
Confidence 54 333332221100 0011 112333333333322 2344445555555555655553 444 355
Q ss_pred CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecC
Q 048438 163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGA 232 (239)
Q Consensus 163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~ 232 (239)
..+.+.+.+++.. ...+.+.|.++|.......... +..++|++++.
T Consensus 298 ~~~~i~~~~~~~~------------------------~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~~ 345 (361)
T PRK00950 298 EANFVLVDVTPMT------------------------AKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIGT 345 (361)
T ss_pred cceEEEEECCCCC------------------------HHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECCC
Confidence 6677777773311 1256666766665444333332 35689999873
No 190
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=98.78 E-value=1.5e-07 Score=81.25 Aligned_cols=152 Identities=17% Similarity=0.261 Sum_probs=108.6
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ce
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CC 81 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g 81 (239)
.+-+|.+-.-+|.+..+.||++|+++||++|+.++||.+++.+.+.-+ ++ -+||+++-|+.|.+++... .|
T Consensus 149 ~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~P-----L~--~GaDIVvhSaTKyl~GHsDvl~G 221 (396)
T COG0626 149 NTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRP-----LE--LGADIVVHSATKYLGGHSDVLGG 221 (396)
T ss_pred CceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccccCh-----hh--cCCCEEEEeccccccCCcceeee
Confidence 356777888899999999999999999999999999999988766333 21 1499999999999998755 34
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE-EEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE-VVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~-~~~ 160 (239)
++..+++ .+...... ...-..|.-..+...|..+| |.+.+.-|++++.+.|..+.+.|++.|.++ |+.
T Consensus 222 ~v~~~~~-~~~~~~~~--------~~~~~~G~~l~p~dA~l~lR--GlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~y 290 (396)
T COG0626 222 VVLTPNE-ELYELLFF--------AQRANTGAVLSPFDAWLLLR--GLRTLALRMERHNENALKIAEFLADHPKVKKVYY 290 (396)
T ss_pred EEecChH-HHHHHHHH--------HHHhhcCCCCCHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEC
Confidence 3333332 22211100 00001222334456677776 677888999999999999999999998887 444
Q ss_pred CC----------------CeeEEEEEEcC
Q 048438 161 PC----------------HFAVVCFRVSP 173 (239)
Q Consensus 161 ~~----------------~~~iv~f~~~~ 173 (239)
|. ..++++|.+.+
T Consensus 291 Pgl~shp~he~~~rq~~g~gg~~Sf~l~~ 319 (396)
T COG0626 291 PGLPSHPGHELAKRQMTGYGGLFSFELKN 319 (396)
T ss_pred CCCCCCCcHHHHHHhcCCCceEEEEEeCC
Confidence 42 35799999986
No 191
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=98.78 E-value=6.2e-08 Score=83.50 Aligned_cols=189 Identities=11% Similarity=0.012 Sum_probs=104.7
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHh-CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQF-GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~-gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~ 82 (239)
+-+|+++.-+|.||.+.|.+++.++++.. ++++++|.+|.-.... ..........+.+ .+..+++|+++.| .-+|+
T Consensus 148 ~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~-~s~~~~~~~~~~~-iv~~S~SK~~~l~GlRlG~ 225 (354)
T PRK04635 148 AKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPE-YSVADLLASYPNL-VVLRTLSKAFALAGARCGF 225 (354)
T ss_pred CCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccC-cchHHHHhhCCCE-EEEechHHHhhhhHHHHhh
Confidence 44677788899999999999999999874 7999999998643211 1100111111112 4577999997522 33677
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
++. +++.+....... ..+... . ........++...+.+.+++..++..+..+++.+.|++.+++++. ++
T Consensus 226 ~i~-~~~~~~~l~~~~------~~~~~~--~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~ 294 (354)
T PRK04635 226 TLA-NEELIEILMRVI------APYPVP--L-PVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVL-EG 294 (354)
T ss_pred hhC-CHHHHHHHHhhc------CCCCCC--H-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CC
Confidence 765 344443221100 001100 0 000111122222233445556666677778899999988667765 55
Q ss_pred CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438 163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
..+.+.+++++. . .+.+.|.++|..+..........++|+++..
T Consensus 295 ~g~f~~~~~~~~----------------------~----~~~~~l~~~gv~v~~~~~~~~~~~lRis~~~ 338 (354)
T PRK04635 295 NGNYVLAKFDDV----------------------D----AVFKALWDAGIVARAYKDPRLANCIRFSFSN 338 (354)
T ss_pred CCcEEEEECCCH----------------------H----HHHHHHHHCCEEEEECCCCCCCCeEEEEeCC
Confidence 556555554320 1 4555666666554332211234689999753
No 192
>PRK06207 aspartate aminotransferase; Provisional
Probab=98.77 E-value=6e-07 Score=78.83 Aligned_cols=195 Identities=11% Similarity=0.096 Sum_probs=108.7
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC---CcceEEEcCcccCCCcc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE---GADSFSLNAHKWFFATL 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~---~~Ds~~~~~hK~l~~P~ 78 (239)
+-+|+.+.-+|.||.+.+ +++|+++|++||+++++|.+++-.......... ...+. .-=+++.++.|.++.|
T Consensus 179 ~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~-~~~~~~~~~~vi~i~SfSK~~~lp- 256 (405)
T PRK06207 179 VRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTH-LRALPIDPENVITIMGPSKTESLS- 256 (405)
T ss_pred CeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCc-hhcCCCCcCcEEEEecchhhccCc-
Confidence 345677777899999988 777888999999999999998754321110000 11111 0115778999998755
Q ss_pred c--ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 79 D--CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 79 g--~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
| +|.++. ++.++....... .. +... ...+....+..+++. +..-+++++++..+..+++.+.|++++++
T Consensus 257 GlRiG~ii~-~~~l~~~~~~~~----~~--~~~~-~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 327 (405)
T PRK06207 257 GYRLGVAFG-SPAIIDRMEKLQ----AI--VSLR-AAGYSQAVLRTWFSE-PDGWMKDRIARHQAIRDDLLRVLRGVEGV 327 (405)
T ss_pred ccceEEEEc-CHHHHHHHHHHH----hH--hccC-CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5 776654 333333221100 00 0000 000111122222221 22235666777777788888999887788
Q ss_pred EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEecC
Q 048438 157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATGA 232 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~ 232 (239)
++..+...+-+.+++++... + ...+.+.|. +.|..+...... .+..++|+++..
T Consensus 328 ~~~~p~gg~fl~~~l~~~~~---------------~-------~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~ 384 (405)
T PRK06207 328 FVRAPQAGSYLFPRLPRLAV---------------S-------LHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ 384 (405)
T ss_pred eecCCCeeEEEEEeCcccCC---------------C-------HHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC
Confidence 76544445566666653211 0 124566665 346655554433 235789999875
No 193
>PRK08363 alanine aminotransferase; Validated
Probab=98.77 E-value=2.2e-07 Score=81.38 Aligned_cols=199 Identities=11% Similarity=0.084 Sum_probs=107.4
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCc-c-eEEEcCcccCC-Ccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGA-D-SFSLNAHKWFF-ATL 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~-D-s~~~~~hK~l~-~P~ 78 (239)
+-+|+.+..+|.||.+.+ +++|+++|+++|+++++|.+|+.....-+ ... ...+... . .+..+++|+++ ...
T Consensus 167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~-~~~~~~~~~vi~~~SfSK~~~~~Gl 244 (398)
T PRK08363 167 TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVS-PGSLTKDVPVIVMNGLSKVYFATGW 244 (398)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccC-HHHcCcCCcEEEEecchhccCCccc
Confidence 346667788899999887 88999999999999999999875322110 000 1111112 2 34679999954 445
Q ss_pred cceEEEee-CcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWAT-NPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
.+|++++. .+..+....... ... .......+ .+.......++.. ..+-+++..++..+..+++.+.|.++++++
T Consensus 245 RiG~~~~~~~~~~~~~l~~~~-~~~--~~~~~~~s-~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 319 (398)
T PRK08363 245 RLGYIYFVDPEGKLAEVREAI-DKL--ARIRLCPN-TPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGIS 319 (398)
T ss_pred eEEEEEEeCcHHHHHHHHHHH-HHH--hcccccCC-hHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 67888762 332222111000 000 00000001 1111112222321 234555666667778888889998887877
Q ss_pred EEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHH-HHHHHhcCcEEEEEEEEC--CEeEEEEEecC
Q 048438 158 VVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNREL-LESINASGKAYMTNVVLG--GIYAIRFATGA 232 (239)
Q Consensus 158 ~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~ 232 (239)
+. +++.+.+.+ ++++... .+ ...+ .+.|.++|....+..... +..++|+++..
T Consensus 320 ~~-~p~g~~~~~~~l~~~~~--------------~~-------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~ 376 (398)
T PRK08363 320 TT-KPQGAFYIFPRIEEGPW--------------KD-------DKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFLP 376 (398)
T ss_pred ec-CCCeEEEEEEEeccCCC--------------CC-------HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC
Confidence 54 566676665 5543100 00 0123 233455666555444332 34689999864
No 194
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=98.75 E-value=3.5e-07 Score=79.09 Aligned_cols=188 Identities=12% Similarity=0.031 Sum_probs=110.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccc--cccCCCCCcceEEEcCcccCCCc-cc
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFR--HFIDGVEGADSFSLNAHKWFFAT-LD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~hK~l~~P-~g 79 (239)
+-+|+++..+|.+|.+.|.++|.++++.+ |+++++|.+|......-.... .... ...-.+++.++.|.++.| ..
T Consensus 155 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~R 233 (367)
T PRK02731 155 TRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVA-KFPNVVVTRTFSKAYGLAGLR 233 (367)
T ss_pred CcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHh-hcCCEEEEeeehHhhcCcccc
Confidence 45677788899999999999999999875 999999999865432111000 0011 111235566889986533 34
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
+|+++.. ++.+....... ..+. ...+..+.+...+.. +.+++..++..++.+++.+.|++. |+.+
T Consensus 234 iG~l~~~-~~~~~~l~~~~------~~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 299 (367)
T PRK02731 234 VGYGIAP-PEIIDALNRVR------QPFN------VNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-GLEY 299 (367)
T ss_pred eeeeeCC-HHHHHHHHHcc------CCCC------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence 6887763 33332221100 0011 122334444444432 334566666778888899999886 7776
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG 231 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~ 231 (239)
. ++..+.+.+++++.. + ...+.+.|.++|.............++|++++
T Consensus 300 ~-~~~g~~~~i~~~~~~---------------------~--~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~ 348 (367)
T PRK02731 300 I-PSVGNFILVDFDDGK---------------------D--AAEAYQALLKRGVIVRPVAGYGLPNALRITIG 348 (367)
T ss_pred C-CCCceEEEEECCCCC---------------------C--HHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC
Confidence 5 556788888874321 0 12566677666655443322222468999976
No 195
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=98.75 E-value=4.8e-07 Score=79.25 Aligned_cols=194 Identities=12% Similarity=0.060 Sum_probs=105.4
Q ss_pred cEEEEEecCCCCcccc----cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAV----DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i----~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
..+|++.-..++.|.+ ..+++|.++|++||+++++|.+|.+.--...-+.....++. .|+++ ..|.+++-...
T Consensus 180 ~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~-pDi~t--~~K~lggG~pi 256 (397)
T TIGR03246 180 TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT-PDILT--SAKALGGGFPI 256 (397)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCC-CCEEE--eehhhhCCcce
Confidence 4466666555666754 44999999999999999999998543111110110122443 88875 57888543446
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~ 159 (239)
|.+..++ ++....... ....++ .+.+.......++++.+.. ++..++..++.+++.+.|+++. .+.++
T Consensus 257 gav~~~~-~i~~~~~~~------~~~~t~-~~~p~~~aaa~a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~ 325 (397)
T TIGR03246 257 GAMLTTT-EIAAHLKVG------THGTTY-GGNPLACAVAGKVLDLVNT---PELLAGVKQRHDLFVDGLEKINARYNVF 325 (397)
T ss_pred eEEEEcH-HHHHhccCC------CcCCCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 6666543 332221100 000111 1222222333344554432 3456667788899999887752 12222
Q ss_pred cC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 FP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
.. ....++.+.+.+.. +.....+.+.|.++|.+... .|..++|+++....|++
T Consensus 326 ~~vrg~G~~~~i~~~~~~---------------------~~~~~~~~~~l~~~Gv~~~~----~g~~~lR~~p~~~~t~~ 380 (397)
T TIGR03246 326 SEIRGKGLLIGAVLTEAY---------------------QGKAKQFVNAAAEEGVIALI----AGPNVVRFAPSLVISDD 380 (397)
T ss_pred EeeecCceEEEEEEcCch---------------------hhHHHHHHHHHHHCCeEEee----cCCCEEEEeCCCCCCHH
Confidence 21 12234444443210 12344677788888877543 24578999977776654
No 196
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.9e-08 Score=83.20 Aligned_cols=197 Identities=16% Similarity=0.037 Sum_probs=119.0
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccCC--CCCcceEEEcCcccCCCcccceE
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDG--VEGADSFSLNAHKWFFATLDCCC 82 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~--~~~~Ds~~~~~hK~l~~P~g~g~ 82 (239)
+|+.---.++-|.+.+++++.+++|+|.+++++|.||++|++.-- .+. ...+ -..+|.+...+.|.+++ +|.
T Consensus 279 ~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~t-Grgvce~~g~d~~dvDImMGtftKSfga---~GG 354 (519)
T KOG1357|consen 279 LICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGAT-GRGVCEYFGVDPEDVDIMMGTFTKSFGA---AGG 354 (519)
T ss_pred eeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCC-CcceeeccCCCchhheeecceehhhccc---ccc
Confidence 333333457899999999999999999999999999999987321 111 0111 12499999999999876 344
Q ss_pred EEeeCcccccccccCCCCccCCCCceecC-CCCCC-hHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITL-SRSFR-SLKLWFVIRNY----GMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~~----g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
....+............ ..... +.+.. +-....+++.+ |.+.-++++++..+++++++..|++. ||
T Consensus 355 yiagsk~lid~lrt~s~-------~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-gf 426 (519)
T KOG1357|consen 355 YIAGSKELIDYLRTPSP-------SALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-GF 426 (519)
T ss_pred eecCcHHHHhhhccCCC-------ceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-cE
Confidence 44433322222211100 01111 11111 11122233322 45566788888999999999999885 99
Q ss_pred EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC---CEeEEEEEecCC
Q 048438 157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG---GIYAIRFATGAT 233 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---g~~~lR~~~~~~ 233 (239)
.+++..+++++...+-++. .+..+.++|.++....+...... =....|+|..+.
T Consensus 427 ivyG~~dSpVvplll~~~~-----------------------k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ 483 (519)
T KOG1357|consen 427 IVYGNNDSPVVPLLLYGPA-----------------------KIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSAS 483 (519)
T ss_pred EEecCCCCCcceeeecCcc-----------------------cccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhccc
Confidence 9999888877777765532 11244555655544433221111 124669998888
Q ss_pred CCCcC
Q 048438 234 LTEER 238 (239)
Q Consensus 234 ~t~~~ 238 (239)
+|.|+
T Consensus 484 ht~e~ 488 (519)
T KOG1357|consen 484 HTKED 488 (519)
T ss_pred ccHHH
Confidence 88764
No 197
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=98.75 E-value=4.8e-07 Score=79.24 Aligned_cols=202 Identities=13% Similarity=0.045 Sum_probs=122.7
Q ss_pred CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438 3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~ 78 (239)
..|.++++--...+-|.+.| ++++.++|++||+.+++|..|.+..-...-|..-..++. .|.++++ |.+++-.
T Consensus 221 ~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~-PDivt~a--K~ig~G~ 297 (447)
T COG0160 221 EEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVE-PDIVTLA--KSLGGGL 297 (447)
T ss_pred CceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCC-CCEEEec--ccccCCC
Confidence 45788888888888899877 789999999999999999999876543332222244554 9998865 8877755
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~ 157 (239)
..|.+..+ ++... .... ...++ ..|.+..+.+..+.|+.+-.+ +..++..++.+++++.|.++ ..+.
T Consensus 298 Pl~avv~r-~ei~~-~~~g------~~~~T-f~GNpva~Aaa~AvL~vie~e---~L~~~a~~~G~~l~~~L~~l~~~~~ 365 (447)
T COG0160 298 PLSAVVGR-AEIMD-WPPG------GHGGT-FGGNPVACAAALAVLDVIEEE---NLLERAAELGEYLRDRLEELQEKHP 365 (447)
T ss_pred ceeEEecc-HHhcc-cCCc------ccCCC-CCcCHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 56666664 34433 2111 01112 233344444444556655444 45556668888888888754 2344
Q ss_pred EEcCCCe--eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 158 VVFPCHF--AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 158 ~~~~~~~--~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
++++.+- -++...+..+.. +.+-..++..++.+++.++|.++.+.. ....+||+.+--..|
T Consensus 366 ~IgdVRG~Glm~giE~v~d~~---------------t~~p~~~~~~~i~~~~~~~Glil~~~G--~~~nviRi~PPL~is 428 (447)
T COG0160 366 LIGDVRGLGLMIGVELVKDRD---------------TKEPDAELAAKIVARAFERGLLLLTCG--PHGNVLRILPPLTIS 428 (447)
T ss_pred ceecccccceEEEEEEecCCC---------------CCCCCHHHHHHHHHHHHHcCCEEeccC--CCCcEEEEeCCcccC
Confidence 5555431 244444432110 000013566688899999998766531 126789988655444
Q ss_pred C
Q 048438 236 E 236 (239)
Q Consensus 236 ~ 236 (239)
+
T Consensus 429 ~ 429 (447)
T COG0160 429 D 429 (447)
T ss_pred H
Confidence 4
No 198
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=98.74 E-value=1.1e-07 Score=83.74 Aligned_cols=160 Identities=20% Similarity=0.200 Sum_probs=90.5
Q ss_pred cEEEEEecCCCCc-cccc---ChhHHHHHHHHhCCEEEEecccccccccC-----ccccc-ccC-----CCCCcceEEEc
Q 048438 5 PLFLCATIGTTAI-TAVD---PLKPLCDVAKQFGIWVHVDAAYAGSACIF-----PEFRH-FID-----GVEGADSFSLN 69 (239)
Q Consensus 5 p~~vv~t~gtt~~-G~i~---pl~~i~~i~~~~gi~lhvD~A~~~~~~~~-----~~~~~-~~~-----~~~~~Ds~~~~ 69 (239)
+.+|+++..+|.+ |..- ++++|.++|++||+++|.|+|+....+.+ +.+.. ... -...+|+++++
T Consensus 153 ~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS 232 (431)
T cd00617 153 IPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMS 232 (431)
T ss_pred ccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEE
Confidence 3455666666655 7765 46688999999999999999987642222 11111 000 01249999999
Q ss_pred CcccCCCcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Q 048438 70 AHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSL-KLWFVIRNYGMENLRHFLRSHVNMARLFER 148 (239)
Q Consensus 70 ~hK~l~~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~g~~~~~~~~~~la~~l~~ 148 (239)
+||-+++|.| |++..++++......... +....+...++...+-. ++..+|+... + .+.+++..+.++++.+
T Consensus 233 ~~K~~~~~~G-G~i~~~d~~l~~~~~~~~---~~~~~~~~~gG~~~r~~~A~A~gL~e~~-~--~~~l~~~~~~r~~l~~ 305 (431)
T cd00617 233 AKKDGLVNIG-GFLALRDDELYEEARQRV---VLYEGFVTYGGMAGRDMEALAQGLREAV-E--EDYLRHRVEQVRYLGD 305 (431)
T ss_pred eecCCCCccc-eEEEeCcHHHHHHHHHhc---cccCCccccccccHHHHHHHHHHHHhcc-c--HHHHHHHHHHHHHHHH
Confidence 9999888863 455555443443322100 00001111122221111 1222333211 1 2445555567789999
Q ss_pred HHhCCCCeEEEcCCCeeEEEEEEc
Q 048438 149 LVSGDKRFEVVFPCHFAVVCFRVS 172 (239)
Q Consensus 149 ~l~~~~g~~~~~~~~~~iv~f~~~ 172 (239)
.|++. |+.+..|...+.|.+..+
T Consensus 306 ~L~~~-G~~v~~P~Ggh~v~~d~~ 328 (431)
T cd00617 306 RLDEA-GVPIVEPAGGHAVFIDAR 328 (431)
T ss_pred HHHHC-CCCccCCCcceEEEEEhH
Confidence 99986 998887766767776665
No 199
>PRK07049 methionine gamma-lyase; Validated
Probab=98.73 E-value=4e-07 Score=80.41 Aligned_cols=149 Identities=12% Similarity=0.163 Sum_probs=100.0
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHH------hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQ------FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~------~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~ 78 (239)
+-+|.+..-+|.+|.+.|+++|.+++++ ++++++||.++......-+ +.. ++|.++.|++|.+++..
T Consensus 175 tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~p-----l~~--g~divv~S~SK~~gG~~ 247 (427)
T PRK07049 175 VSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQKP-----LEH--GADLSVYSLTKYVGGHS 247 (427)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCCc-----ccc--CCCEEEEcCceeecCCC
Confidence 5577777889999999999999999988 8999999999765432111 111 48999999999998643
Q ss_pred c--ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 79 D--CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 79 g--~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
| +|++. .++++...... .....+........|.+++.+ +.+..++++..+.++.+.+.|++.|++
T Consensus 248 glr~G~vv-~~~~l~~~l~~----------~~~~~g~~ls~~~a~l~~r~L--~tl~~R~~~~~~~a~~la~~L~~~p~V 314 (427)
T PRK07049 248 DLVAGAVL-GRKALIRQVRA----------LRSAIGTQLDPHSCWMLGRSL--ETLVLRMERANRNARAVAEFLRDHPKV 314 (427)
T ss_pred CcEEEEEE-CCHHHHHHHHH----------HHHhcCCCCCHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3 34443 33333222210 011112223345566665544 467788888899999999999999887
Q ss_pred EEE-cCC------------------CeeEEEEEEcC
Q 048438 157 EVV-FPC------------------HFAVVCFRVSP 173 (239)
Q Consensus 157 ~~~-~~~------------------~~~iv~f~~~~ 173 (239)
+-+ .|. ..++++|.+++
T Consensus 315 ~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~ 350 (427)
T PRK07049 315 EKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG 350 (427)
T ss_pred cEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC
Confidence 533 231 13599999974
No 200
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=98.73 E-value=8.9e-07 Score=77.06 Aligned_cols=194 Identities=15% Similarity=0.065 Sum_probs=106.0
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
+-+|+++..+|.||.+.+ +++|+++|++||+++++|.+|+-....-...... +.+.....++..++.|.++ ..|
T Consensus 165 ~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g-~~G 243 (383)
T TIGR03540 165 AKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYN-MTG 243 (383)
T ss_pred ceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccC-Ccc
Confidence 456667777899999988 6888999999999999999987432211000000 1111123466788999875 445
Q ss_pred --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
+|+++. +++.+...... ......+...........+++. +.+-+++..+...+..+.+.+.|++. |++
T Consensus 244 lRiG~~i~-~~~l~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~ 313 (383)
T TIGR03540 244 WRIGMAVG-NADLIAGLGKV-------KTNVDSGVFQAIQYAAIAALNG-PQDVVKEIRKIYQRRRDLLLEALKKI-GID 313 (383)
T ss_pred ceeeEEeC-CHHHHHHHHHH-------HHhcccCCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhC-CCE
Confidence 677654 34433322110 0000000000111122222322 23444555566678888899999886 888
Q ss_pred EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEecC
Q 048438 158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATGA 232 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~ 232 (239)
+..+.....+.+.+++. .. ...+.+.|.+ .|....+.... .+..++|+++..
T Consensus 314 ~~~~~~~~~~~~~l~~~-~~----------------------~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~~ 368 (383)
T TIGR03540 314 VEKPKATFYVWVPVPEG-YT----------------------SAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV 368 (383)
T ss_pred ecCCCcceEEEEECCCC-CC----------------------HHHHHHHHHHHCCEEEecchhhCccCCCeEEEEecC
Confidence 76443333455666532 10 1255666544 45554443333 234689999864
No 201
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=98.72 E-value=7.4e-07 Score=76.73 Aligned_cols=188 Identities=14% Similarity=0.044 Sum_probs=109.3
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC 82 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~ 82 (239)
.+-+|+++..+|.||.+.+.+++.++|++++.++++|.+|+.. . -..........+ --++..|++|.++.| .-+|.
T Consensus 148 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~-~-~~~~~~~~~~~~-~vi~~~S~SK~~~~~GlRiG~ 224 (351)
T PRK14807 148 QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEF-Y-GNTIVDVINEFE-NLIVLRTLSKAFGLAGLRVGY 224 (351)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhh-c-ccchHHHhhhCC-CEEEEecchHhcccchhceee
Confidence 3456667788999999999999999999989999999999642 1 111111111111 236678999998634 33566
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
++. .++.+....... ..+. ...+....+...+....++++.++..+..+++.+.|++.+|+++. ++
T Consensus 225 ~v~-~~~~~~~~~~~~------~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~ 290 (351)
T PRK14807 225 AVA-NENILKYLNLVK------SPYN------INSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKIPGIKVY-PS 290 (351)
T ss_pred eec-CHHHHHHHHHcc------CCCC------cCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cC
Confidence 554 333333221100 0011 112222333333333345666666777778888889887888764 55
Q ss_pred CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE-ECCEeEEEEEecCCC
Q 048438 163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV-LGGIYAIRFATGATL 234 (239)
Q Consensus 163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~-~~g~~~lR~~~~~~~ 234 (239)
..+.+.++++. ...+.+.|.++|..+..... .....++|+++.++.
T Consensus 291 ~~~~~~i~~~~--------------------------~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~~~~ 337 (351)
T PRK14807 291 KTNFILVKFKD--------------------------ADYVYQGLLERGILVRDFSKVEGLEGALRITVSSCE 337 (351)
T ss_pred CccEEEEEcCC--------------------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcCCHH
Confidence 55555555432 11556667777655433221 123568999987653
No 202
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=98.69 E-value=8.5e-07 Score=77.64 Aligned_cols=193 Identities=14% Similarity=0.052 Sum_probs=105.8
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
..+|++.....+.|.+.| +++|.++|++||+++++|.+|++.--...-+.....++. .|.++++ |.+++....
T Consensus 180 ~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~-PDi~t~g--K~lg~G~p~ 256 (395)
T PRK03715 180 TVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIE-PDIMTLG--KGIGGGVPL 256 (395)
T ss_pred ceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCC-Cceeeeh--hhhhCCcce
Confidence 456777777788888887 999999999999999999999852111110000122443 8987764 998875556
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---CCeE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD---KRFE 157 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---~g~~ 157 (239)
|.++.++ +.. ..... ....++ .+.+.......++++.+.. ++..++..++.++|+++|+++ .++.
T Consensus 257 ~av~~~~-~i~-~~~~~------~~~~T~-~g~pl~~aaala~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~~~i~ 324 (395)
T PRK03715 257 AALLAKA-EVA-VFEAG------DQGGTY-NGNPLMTAVGVAVISQLLA---PGFLEGVRARGEYLKEKLLELSEERGLE 324 (395)
T ss_pred EEEEEcc-ccc-cccCC------CcCCCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhhcCCcC
Confidence 7776654 332 11100 000111 1222223333445555532 345566678888888888753 1332
Q ss_pred EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
-+ .....|+.+.+.... ...+. +....+.++|.+... .+...||+++....|++
T Consensus 325 ~v-rG~Glm~~i~l~~~~--------------------~~~~~-~~~~~~~~~Gi~~~~----~~~~~lR~~p~l~~t~~ 378 (395)
T PRK03715 325 GE-RGEGLLRALLLGKDI--------------------GPQIV-EKARDMQPDGLLLNA----PRPNLLRFMPALNVTTE 378 (395)
T ss_pred eE-EcceeEEEEEecCch--------------------HHHHH-HHHHhccCCCEEEee----cCCCEEEEeCCcccCHH
Confidence 11 123456666664310 01111 222223334644322 13368999988877765
Q ss_pred C
Q 048438 238 R 238 (239)
Q Consensus 238 ~ 238 (239)
|
T Consensus 379 e 379 (395)
T PRK03715 379 E 379 (395)
T ss_pred H
Confidence 4
No 203
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=98.69 E-value=1.1e-06 Score=76.77 Aligned_cols=195 Identities=12% Similarity=0.121 Sum_probs=101.4
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-- 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-- 79 (239)
+-+|+++..+|.||.+-+ +++|+++|++||+++++|.+++.....-............--++..+++|.++.| |
T Consensus 167 ~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-GlR 245 (391)
T PRK07309 167 LKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMT-GWR 245 (391)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCc-cce
Confidence 456777777899999755 8889999999999999999987543311111111110111236778999997655 4
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
+|+++. +++.+...... ..+.......+....+...++. +........++..+..+++.+.|++. ++++.
T Consensus 246 vG~~v~-~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 315 (391)
T PRK07309 246 IGLIFA-PAEFTAQLIKS-------HQYLVTAATTMAQFAAVEALTN-GKDDALPMKKEYIKRRDYIIEKMTDL-GFKII 315 (391)
T ss_pred eEEEEe-CHHHHHHHHHH-------HhhcccCCChHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHHHHHHHHHC-CCeec
Confidence 566664 33443332210 0011001111111111122221 11112233344456677888888876 77765
Q ss_pred cCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEecC
Q 048438 160 FPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATGA 232 (239)
Q Consensus 160 ~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~ 232 (239)
++..+. +.+++++... .....+.+++. +.|..+.+.... .+..++|+++..
T Consensus 316 -~p~gg~~~~~~l~~~~~---------------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~ 370 (391)
T PRK07309 316 -KPDGAFYIFAKIPAGYN---------------------QDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA 370 (391)
T ss_pred -CCCeeEEEEEECCCCCC---------------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 344443 3335543110 00124555544 445554444332 235799999875
No 204
>PRK06290 aspartate aminotransferase; Provisional
Probab=98.68 E-value=1.5e-06 Score=76.55 Aligned_cols=203 Identities=15% Similarity=-0.010 Sum_probs=110.3
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCcc-
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
+-+|+++.-+|.||.+.+ +++|.++|++||+++++|.+|+-..... ..... ..+....+.+..++.|.++.|.
T Consensus 180 ~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~-~~~s~~~~~~~~~~~I~i~SfSK~~g~~Gl 258 (410)
T PRK06290 180 AKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG-KPLSFLSVPGAKEVGVEIHSLSKAYNMTGW 258 (410)
T ss_pred ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC-CCcChhcCCCccccEEEEeechhhcCCchh
Confidence 456666777899999988 5778888999999999999987543211 11111 1111235688999999986442
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
=+|+++. .++.+....... . .+. .+. ..+....+...+.. +-+++..++..+..+++.+.|++. |+.
T Consensus 259 RiG~ii~-~~~l~~~l~~~~----~--~~~--~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 326 (410)
T PRK06290 259 RLAFVVG-NELIVKAFATVK----D--NND--SGQ--FIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV-GFK 326 (410)
T ss_pred heEeEEe-CHHHHHHHHHHH----h--ccc--cCC--cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence 2566664 333332221000 0 000 000 01111122222211 223445556667788899999886 777
Q ss_pred EEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 158 VVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 158 ~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
+. +++.+...| ++++.... .... .-...+.+.|.+++.+.+.+... -..++|+++..+..+
T Consensus 327 ~~-~p~g~f~l~v~lp~~~~~------------~~~~----~~~~~~~~~Ll~~~~v~~~p~~~-~~~~lRi~~~~~~~~ 388 (410)
T PRK06290 327 AE-MPGGTFYLYVKAPKGTKS------------GIKF----ENAEEFSQYLIKEKLISTVPWDD-AGHFLRFSVTFEAKD 388 (410)
T ss_pred ec-CCCeeeEEEEECCCcccc------------CCCC----CCHHHHHHHHHHhCCEEEECCcc-ccCeEEEEEEccccc
Confidence 55 455565543 55432100 0000 01226777888787765433111 124899999876655
Q ss_pred cC
Q 048438 237 ER 238 (239)
Q Consensus 237 ~~ 238 (239)
+|
T Consensus 389 ~~ 390 (410)
T PRK06290 389 EE 390 (410)
T ss_pred cc
Confidence 54
No 205
>PRK07777 aminotransferase; Validated
Probab=98.68 E-value=7.4e-07 Score=77.71 Aligned_cols=196 Identities=14% Similarity=0.067 Sum_probs=104.9
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
+-+|+++...|.||.+.+ +++|.++|+++++++++|.+|+.....-...... ..+....+++..+++|.++.| |
T Consensus 160 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~-G 238 (387)
T PRK07777 160 TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVT-G 238 (387)
T ss_pred cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCc-C
Confidence 345666677889999754 8889999999999999999986533211111111 112223678899999998755 4
Q ss_pred --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
+|+++. +++.+...... .....+. .+.. ....+...+.. +.+-+++..+...+..+++.+.|++. +++
T Consensus 239 lRiG~~~~-~~~l~~~~~~~----~~~~~~~--~~~~-~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~ 308 (387)
T PRK07777 239 WKIGWACG-PAPLIAAVRAA----KQYLTYV--GGAP-FQPAVAHALDH-EDAWVAALRDSLQAKRDRLAAGLAEA-GFE 308 (387)
T ss_pred ceeEEEec-CHHHHHHHHHH----HhhcccC--CCCH-HHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 566664 33333222100 0000010 1111 11111112221 23334455566678888899999886 777
Q ss_pred EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE-----CCEeEEEEEec
Q 048438 158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL-----GGIYAIRFATG 231 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~-----~g~~~lR~~~~ 231 (239)
+..+.....+.+++++.+. .....+.++|.++ |..+.+...+ .+..++|+++.
T Consensus 309 ~~~~~g~~~~~~~~~~~~~---------------------~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~ 367 (387)
T PRK07777 309 VHDSAGTYFLCADPRPLGY---------------------DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC 367 (387)
T ss_pred ccCCCcceEEEecccccCC---------------------CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec
Confidence 6533333334445542110 0012566677544 5544443322 12468999987
Q ss_pred C
Q 048438 232 A 232 (239)
Q Consensus 232 ~ 232 (239)
.
T Consensus 368 ~ 368 (387)
T PRK07777 368 K 368 (387)
T ss_pred C
Confidence 5
No 206
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=98.68 E-value=1.6e-07 Score=80.85 Aligned_cols=189 Identities=13% Similarity=0.050 Sum_probs=107.0
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC 82 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~ 82 (239)
-+|+++.-+|.||.+.+.++|.++++.. +++++||.||.-... .......+...+ -=++.-+++|+++.| .-+|.
T Consensus 147 ~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~-~~s~~~~~~~~~-n~iv~rSfSK~~glaGlRiGy 224 (351)
T PRK01688 147 KVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCP-QASLAGWLAEYP-HLVILRTLSKAFALAGLRCGF 224 (351)
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCC-CCChHHHHhhCC-CEEEEecchHhhcCHHHHHhH
Confidence 4566778899999999988877777542 689999999854321 111111111111 124567999987533 22476
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
++. +++.+....... ..|.. +. ........++..-+.+-+++.+++..+..+++.+.|+++++++.+.++
T Consensus 225 ~i~-~~~~i~~l~~~~------~~~~v--~~-~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps 294 (351)
T PRK01688 225 TLA-NEEVINLLLKVI------APYPL--ST-PVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDS 294 (351)
T ss_pred HhC-CHHHHHHHHhcc------CCCCC--CH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC
Confidence 665 344433221100 01110 10 000111112221123445666666677788999999988787655677
Q ss_pred CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC-EeEEEEEecC
Q 048438 163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-IYAIRFATGA 232 (239)
Q Consensus 163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g-~~~lR~~~~~ 232 (239)
..|.+.+++++. ..+.+.|.++|..+.......| ..++|+++..
T Consensus 295 ~~nfi~~~~~~~--------------------------~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~~ 339 (351)
T PRK01688 295 ETNYILARFTAS--------------------------SAVFKSLWDQGIILRDQNKQPGLSNCLRITIGT 339 (351)
T ss_pred CCcEEEEEcCCH--------------------------HHHHHHHHHCCeEEEECCCcCCCCCeEEEeCCC
Confidence 777777766421 2567777777776554332222 4689999874
No 207
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.66 E-value=1.5e-06 Score=75.09 Aligned_cols=191 Identities=11% Similarity=0.027 Sum_probs=102.2
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccC----C-CCCcceEEEcCcccCCC
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID----G-VEGADSFSLNAHKWFFA 76 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~----~-~~~~Ds~~~~~hK~l~~ 76 (239)
+-+|+.+..+|.||...+ +++|+++|+++|+++++|.+|+.....-+... .+. + ...--++..++.|.++.
T Consensus 143 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~~~ 221 (357)
T TIGR03539 143 PDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVS-ILDPRVCGGDHTGLLAVHSLSKRSNL 221 (357)
T ss_pred ccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCcc-ceecccCCCccccEEEEeccccccCC
Confidence 456777778899999776 66788999999999999999864221100000 010 0 00113667799999755
Q ss_pred ccc-ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 77 TLD-CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 77 P~g-~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
|.- +|.++. +++.+...... ... .+.....+....+...+. ...+++..+...+..+++.+.|++.
T Consensus 222 ~G~R~G~~i~-~~~~~~~~~~~-------~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~- 289 (357)
T TIGR03539 222 AGYRAGFVAG-DPALVAELLTV-------RKH---AGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA- 289 (357)
T ss_pred CceeEEEEec-CHHHHHHHHHH-------Hhh---cccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 522 465553 33333222100 000 000011122222222232 2334445555567777888888875
Q ss_pred CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--CCEeEEEEEecC
Q 048438 155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--GGIYAIRFATGA 232 (239)
Q Consensus 155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~g~~~lR~~~~~ 232 (239)
|+++. +++.++..+.-.+.. ...+.++|.++|..+...... .+..++|+++.+
T Consensus 290 g~~~~-~p~~~~~~~~~~~~~------------------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~ 344 (357)
T TIGR03539 290 GFRID-HSEAGLYLWATRGED------------------------AWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA 344 (357)
T ss_pred CCCCc-CCCccEEEEEECCCC------------------------HHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC
Confidence 77654 455665444432211 114556676666654443322 245799999876
Q ss_pred C
Q 048438 233 T 233 (239)
Q Consensus 233 ~ 233 (239)
+
T Consensus 345 ~ 345 (357)
T TIGR03539 345 T 345 (357)
T ss_pred C
Confidence 3
No 208
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=98.66 E-value=1e-06 Score=75.76 Aligned_cols=189 Identities=11% Similarity=0.007 Sum_probs=103.0
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-CcceEEEcCcccCCCcc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GADSFSLNAHKWFFATL-D 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~Ds~~~~~hK~l~~P~-g 79 (239)
+-+++++.-+|.||.+.| +++|+++|+++|+++++|.+|+-....-+ ... ....+ .-..+..+++|.++.|. -
T Consensus 137 ~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~-~~~~~~~~~i~~~s~SK~~g~~GlR 214 (350)
T TIGR03537 137 TKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP-PHS-ALEVGIENVLAFHSLSKRSGMTGYR 214 (350)
T ss_pred cEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC-CCc-hhhcCcCCEEEEeecccccCCcccc
Confidence 456777778899999888 88999999999999999999874322111 100 11111 12355669999876552 2
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
.|+++. ++......... . ..+.. +.. .+....+...+ ..+.++++.++..+..+.+.+.|++. |+++
T Consensus 215 iG~~~~-~~~~~~~~~~~----~--~~~~~--~~~--~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~ 282 (350)
T TIGR03537 215 SGFVAG-DEKLISFLRKL----R--ANFGV--ASP--DFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV-GLEY 282 (350)
T ss_pred ceeeec-CHHHHHHHHHH----H--Hhhcc--CCC--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence 565543 33333222110 0 00110 111 11111111111 12334455566667778888888875 7765
Q ss_pred EcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--CCEeEEEEEec
Q 048438 159 VFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--GGIYAIRFATG 231 (239)
Q Consensus 159 ~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~g~~~lR~~~~ 231 (239)
. ++..+. +.+.+++.. + ...+.+.|.++|......... .+..++|+++.
T Consensus 283 ~-~~~g~~~~~~~~~~~~----------------~-------~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~ 334 (350)
T TIGR03537 283 L-YPDATFYLWVKVPSGI----------------D-------AKDYALRLLENGIVVAPGENFGSGEEGYVRVALV 334 (350)
T ss_pred c-CCCeEEEEEEECCCCC----------------C-------HHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec
Confidence 5 444443 445554321 0 125667777777555443333 23468999975
No 209
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=98.66 E-value=3.1e-06 Score=73.48 Aligned_cols=189 Identities=12% Similarity=0.064 Sum_probs=98.3
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+.+|++....+..|.+.+ +++|.++|++||+++++|.+|.+.......+.....++. .|.+ ++.|.+++-...
T Consensus 168 ~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~-~di~--t~sK~l~~G~~i 244 (377)
T PRK02936 168 VAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLD-PDIV--TVAKGLGNGIPV 244 (377)
T ss_pred eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCC-CcEE--EEcccccCCCcc
Confidence 345666666666666533 999999999999999999998642111100000011332 5755 479998742236
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----CCCe
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG----DKRF 156 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----~~g~ 156 (239)
|++..+ +++....... ....+. .+.+........+++.+.. ++..++..++.+++++.|++ .+.+
T Consensus 245 g~v~~~-~~~~~~~~~~------~~~~t~-~~~~~~~aaa~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 313 (377)
T PRK02936 245 GAMIGK-KELGTAFGPG------SHGSTF-GGNPLAMAAAKEVLQVIKQ---PSFLEEVQEKGEYFLQKLQEELEHLECV 313 (377)
T ss_pred EEEEEc-HHHHhhccCC------CCCCCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 666543 3333222110 000011 1112222333334444311 23445555666777776665 2222
Q ss_pred EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
..+. ....++.+.+... ...+.+.|.++|.+... .|..++|+++....|+
T Consensus 314 ~~v~-~~g~~~~i~~~~~-------------------------~~~~~~~l~~~gv~v~~----~g~~~lRi~p~~~~~~ 363 (377)
T PRK02936 314 KNIR-GKGLMIGIECTEE-------------------------VAPVIEQLREEGLLVLS----AGPNVIRLLPPLVVTK 363 (377)
T ss_pred EeEe-ecceEEEEEecch-------------------------HHHHHHHHHHCCeEEec----CCCCEEEEECCcccCH
Confidence 2221 2334566665431 23566777777765543 3557899997655554
Q ss_pred c
Q 048438 237 E 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 364 ~ 364 (377)
T PRK02936 364 E 364 (377)
T ss_pred H
Confidence 3
No 210
>PRK07681 aspartate aminotransferase; Provisional
Probab=98.65 E-value=1.5e-06 Score=76.22 Aligned_cols=195 Identities=13% Similarity=-0.003 Sum_probs=106.2
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccccc--CCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI--DGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+.+.-+|.||.+.+ +++|+++|++||+++++|.+|+-....-....... .+...-.++..+++|.++.| .
T Consensus 167 ~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 246 (399)
T PRK07681 167 AKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGS 246 (399)
T ss_pred ceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccc
Confidence 456677777899999988 77888999999999999999975432111110101 11111346677999987533 2
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
-+|+++. +++.+...... .....++ .+ .........+++. +.+-+++..+...+..+++.+.|++. |+++
T Consensus 247 RiG~~i~-~~~l~~~~~~~----~~~~~~~--~s-~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 316 (399)
T PRK07681 247 RIGYMIG-NEEIVRALTQF----KSNTDYG--VF-LPIQKAACAALRN-GAAFCEKNRGIYQERRDTLVDGFRTF-GWNV 316 (399)
T ss_pred eeEEEec-CHHHHHHHHHH----HhhcccC--CC-HHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence 2677764 34443322110 0000011 00 0111111222221 22334455555667778888899886 7876
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEecC
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATGA 232 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~ 232 (239)
..+...+.+.+++++.. + ...+.+.+.+ .|..+.+.... .+..++|+++..
T Consensus 317 ~~p~~g~f~~~~l~~~~----------------~-------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~ 370 (399)
T PRK07681 317 DKPAGSMFVWAEIPKGW----------------T-------SLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ 370 (399)
T ss_pred cCCCeeeEEEEECCCCC----------------C-------HHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC
Confidence 55555555666665321 0 1245566665 45554443322 234689999874
No 211
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=98.65 E-value=2e-06 Score=73.93 Aligned_cols=187 Identities=13% Similarity=0.020 Sum_probs=108.2
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHh-CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEE
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQF-GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLW 84 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~-gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~ 84 (239)
+|+.+..+|.||.+.|.+++.++++.+ ++++++|.+|+... ...........+ -.+++.+++|.++.| .-+|+++
T Consensus 147 ~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~--~~~~~~~~~~~~-~~i~~~S~SK~~~~~GlR~G~~~ 223 (353)
T PRK05387 147 GIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFG--GESAIPLIDRYP-NLLVVQTFSKSRSLAGLRVGFAI 223 (353)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccC--CcchHHHHhhCC-CEEEEEehhHhhcchhhhceeee
Confidence 566777899999999999999999886 99999999985321 111111111112 458888999987644 2367776
Q ss_pred eeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCCC
Q 048438 85 ATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCH 163 (239)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~~ 163 (239)
. +++.+........ .. ..++ ...+....+...+. .+.+++..++..+..+++.+.|++. |+++. ++.
T Consensus 224 ~-~~~~~~~l~~~~~-~~--~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~ 291 (353)
T PRK05387 224 G-HPELIEALNRVKN-SF--NSYP------LDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL-GFEVL-PSK 291 (353)
T ss_pred c-CHHHHHHHHHhhc-cC--CCCC------cCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCc
Confidence 5 3443332211000 00 0011 11122222222222 2345566677778888999999887 88754 556
Q ss_pred eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438 164 FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 164 ~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
.+.+.+.+++.. ...+.+.|.++|..+..........++|++++.
T Consensus 292 ~~~~~~~~~~~~------------------------~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~~ 336 (353)
T PRK05387 292 ANFVFARHPSHD------------------------AAELAAKLRERGIIVRHFNKPRIDQFLRITIGT 336 (353)
T ss_pred CcEEEEECCCCC------------------------HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeCC
Confidence 667666654311 125566676677654322111235689999863
No 212
>PRK07550 hypothetical protein; Provisional
Probab=98.65 E-value=9.9e-07 Score=76.88 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=102.7
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCC--CCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDG--VEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~--~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++.-+|.+|.+.| +++|+++|++||+++++|.+++............... ...-..++.+++|.++.| .
T Consensus 164 ~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 243 (386)
T PRK07550 164 TRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGH 243 (386)
T ss_pred CcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCccc
Confidence 345556667889999877 7889999999999999999987432110000001111 011234578999998644 3
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
.+|+++.. ++.+...... .. ..... ........+..++..+ .+-.++..++..+..+++.+.|++.+++.+
T Consensus 244 RiG~i~~~-~~~~~~~~~~----~~--~~~~~-~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 314 (386)
T PRK07550 244 RVGAVVAS-PARIAEIEKF----MD--TVAIC-APRIGQIAVAWGLPNL-ADWRAGNRAEIARRRDAFRAVFARLPGWEL 314 (386)
T ss_pred ceEeeecC-HHHHHHHHHH----Hh--hcccC-CCcHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence 46766653 3333222110 00 00000 0111111122222211 122333445556777788888887666654
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEecCCC
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATGATL 234 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~~~~ 234 (239)
. +...+.+.++++..+. + ...+.++|.+ .|......... .+..++|+++..+.
T Consensus 315 ~-~~g~~~~~~~~~~~~~--------------------~--~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~ 370 (386)
T PRK07550 315 L-ASGAYFAYVRHPFPDR--------------------P--SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANAD 370 (386)
T ss_pred C-CCceEEEEecCCCCCC--------------------C--HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCC
Confidence 3 4444555555543111 0 1256666654 45544443322 23568999987543
No 213
>PRK05942 aspartate aminotransferase; Provisional
Probab=98.64 E-value=1.1e-06 Score=76.76 Aligned_cols=194 Identities=13% Similarity=0.074 Sum_probs=104.1
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++.-+|.||.+.+ +++|.++|+++|+++++|.+++-....-...... +.+......++.++.|.++.| .
T Consensus 171 ~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~Gl 250 (394)
T PRK05942 171 AKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGW 250 (394)
T ss_pred ceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhh
Confidence 456666777899999988 7889999999999999999986433211000000 111112345677889977433 3
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
.+|+++. +++.+....... .. ..+... ......+..+++. ..+.+++..++..+..+++.+.|++. ++++
T Consensus 251 RiG~i~~-~~~l~~~l~~~~-~~---~~~~~~---~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~ 320 (394)
T PRK05942 251 RVGFVVG-NRHIIQGLRTLK-TN---LDYGIF---SALQKAAETALQL-PDSYLQQVQERYRTRRDFLIQGLGEL-GWNI 320 (394)
T ss_pred heeeeec-CHHHHHHHHHHH-hh---cccCCC---HHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence 4788775 334433221100 00 000000 0111112222321 23445555666667788888889875 7775
Q ss_pred EcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEecC
Q 048438 159 VFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATGA 232 (239)
Q Consensus 159 ~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~ 232 (239)
. +++.++ +.++++.. . .+ . .+..++. +.|........+ .+..++|+++..
T Consensus 321 ~-~~~~~~f~~~~~~~~-~--------------~~----~----~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~~ 374 (394)
T PRK05942 321 P-PTKATMYLWVPCPVG-M--------------GS----T----DFALNVLQKTGVVVTPGNAFGEGGEGYVRISLIA 374 (394)
T ss_pred c-CCCeeeEEEEECCCC-C--------------CH----H----HHHHHHHHHCCEEEeCChhhCcCCCCeEEEEecC
Confidence 5 445553 44555431 1 00 1 2333333 445554443333 245799999863
No 214
>PRK08912 hypothetical protein; Provisional
Probab=98.64 E-value=1e-06 Score=76.78 Aligned_cols=197 Identities=12% Similarity=0.074 Sum_probs=106.8
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
+-+|+++..+|.||.+.+ +++|.++|++|++++++|.+|+.....-...... ..++...+++..+++|.++ ..|
T Consensus 160 ~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G 238 (387)
T PRK08912 160 TKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFS-LTG 238 (387)
T ss_pred ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhcc-CcC
Confidence 346667788999999877 6778999999999999999986432211011111 1122235788999999865 345
Q ss_pred --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
+|+++.. ++.+....... ....+. .+. .....+...+.. ..+-+++..++..+..+++.+.|++. |++
T Consensus 239 lRiG~~~~~-~~~~~~l~~~~----~~~~~~--~~~-~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 308 (387)
T PRK08912 239 WKVGFVCAA-PPLLRVLAKAH----QFLTFT--TPP-NLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRRI-GFP 308 (387)
T ss_pred ceeEEEecC-HHHHHHHHHHH----hhcccc--CCh-HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 7877763 33332221100 000011 000 011111112211 12233455556667888899999886 777
Q ss_pred EEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE----CCEeEEEEEec
Q 048438 158 VVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL----GGIYAIRFATG 231 (239)
Q Consensus 158 ~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~----~g~~~lR~~~~ 231 (239)
+. +++.+ .+.+.+++.+.. .-...+.+.|.+ .|....+.... .+..++|+++.
T Consensus 309 ~~-~~~g~~~l~~~l~~~~~~--------------------~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~ 367 (387)
T PRK08912 309 VL-PSQGTYFLTVDLAPLGLA--------------------EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA 367 (387)
T ss_pred cc-CCCcceEEEecccccCCC--------------------CCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe
Confidence 65 44444 455566531100 001255566544 45554443332 13479999988
Q ss_pred CC
Q 048438 232 AT 233 (239)
Q Consensus 232 ~~ 233 (239)
.+
T Consensus 368 ~~ 369 (387)
T PRK08912 368 KR 369 (387)
T ss_pred CC
Confidence 64
No 215
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=98.63 E-value=6.5e-07 Score=79.31 Aligned_cols=142 Identities=11% Similarity=0.099 Sum_probs=80.9
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEc--CcccCCCcccceEE
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLN--AHKWFFATLDCCCL 83 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~--~hK~l~~P~g~g~l 83 (239)
-+|+.++ ..|...++++|.++|+++|+++++|+||+.|+..-... +-.+ .|.-++| ..|.+.+-.| |++
T Consensus 161 kaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~---~G~~--gd~~~fSf~~~k~~~~geG-G~l 231 (438)
T PRK15407 161 KAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRM---TGTF--GDIATLSFYPAHHITMGEG-GAV 231 (438)
T ss_pred eEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCee---eecc--CceEEEeCCCCCCccccCc-eEE
Confidence 4455554 46778899999999999999999999999887643211 1112 3555454 4466654333 777
Q ss_pred EeeCcccccccc--cCCCC--------------ccC---------C-CCce-ecCCCCCChHHHHHHHHHhCHHHHHHHH
Q 048438 84 WATNPEYLKNKA--TESKP--------------VVD---------Y-KDWQ-ITLSRSFRSLKLWFVIRNYGMENLRHFL 136 (239)
Q Consensus 84 ~~~~~~~l~~~~--~~~~~--------------~~~---------~-~~~~-~~~~~~~~~~~~~~~l~~~g~~g~~~~~ 136 (239)
++++++...... ...+. .+. + ..+. ...|-.++--.+.+++.....+.+++++
T Consensus 232 ~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~ 311 (438)
T PRK15407 232 FTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFI 311 (438)
T ss_pred EECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHHHHH
Confidence 776653321110 00000 000 0 0000 0112222222233333333346778888
Q ss_pred HHHHHHHHHHHHHHhCCCCe
Q 048438 137 RSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 137 ~~~~~la~~l~~~l~~~~g~ 156 (239)
++.+++++++.+.|+.+++.
T Consensus 312 ~~R~~~a~~y~~~L~~~~~~ 331 (438)
T PRK15407 312 EARKANFAYLKEGLASLEDF 331 (438)
T ss_pred HHHHHHHHHHHHHhccCCCc
Confidence 88999999999999887653
No 216
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=98.63 E-value=4.6e-06 Score=73.19 Aligned_cols=193 Identities=12% Similarity=0.067 Sum_probs=99.7
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCccccc-ccCCCCCcceEEEcCcccCCCccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH-FIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~-~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
+.+|++.-...+.|.+.| +++|.++|++||+++++|.+|++. ........ ...++. .|.+ ++.|.+++-.-
T Consensus 185 ~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-g~~g~~~~~~~~~~~-pdi~--s~sK~l~~G~r 260 (403)
T PRK05093 185 TCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGM-GRTGDLFAYMHYGVT-PDIL--TSAKALGGGFP 260 (403)
T ss_pred eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC-CCCccchhhhhcCCC-CCEE--EecccccCCcc
Confidence 445666644455555544 999999999999999999998842 11111100 012332 6755 45799874333
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~ 158 (239)
.|.++.. +++....... . ...+. ++.+........+++.+.. ++..++..++.+++.+.|+++. .+.+
T Consensus 261 ig~vv~~-~~i~~~l~~~---~---~~~t~-~~~~~~~~aa~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 329 (403)
T PRK05093 261 IGAMLTT-AEIASHFKVG---T---HGSTY-GGNPLACAVAEAVFDIINT---PEVLEGVKARRQRFVDGLQKINQKYGV 329 (403)
T ss_pred eEEEEEc-HHHHhhcCCC---C---CCCCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 7777663 3333322110 0 00111 1111222233334444422 2344566678888888887641 1112
Q ss_pred EcCC-C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 159 VFPC-H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 159 ~~~~-~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
+..+ . ..++.+.+++.. .....++.++|.++|.+... .|..++|+++....|+
T Consensus 330 ~~~~~~~G~~~~~~l~~~~---------------------~~~~~~~~~~l~~~Gv~v~~----~g~~~lRl~~~~~~~~ 384 (403)
T PRK05093 330 FSEIRGMGLLIGAELKPQY---------------------KGRARDFLNAAAEEGVMVLV----AGPDVLRFAPSLVIEE 384 (403)
T ss_pred eEeEeeCceEEEEEecCcc---------------------hhHHHHHHHHHHHCCeEEec----CCCCEEEEeCCCCCCH
Confidence 2121 1 233444443310 11234677778777755432 3557899987766554
Q ss_pred c
Q 048438 237 E 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 385 ~ 385 (403)
T PRK05093 385 A 385 (403)
T ss_pred H
Confidence 3
No 217
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=98.62 E-value=1.4e-07 Score=80.54 Aligned_cols=159 Identities=13% Similarity=0.148 Sum_probs=104.6
Q ss_pred CCccEEEEEecCCCCcccccC-hhHHHHHHHHhCCEEEEecccccccccC-cccccccCCCCCcceEEEcCcccCCCccc
Q 048438 2 GLIPLFLCATIGTTAITAVDP-LKPLCDVAKQFGIWVHVDAAYAGSACIF-PEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~p-l~~i~~i~~~~gi~lhvD~A~~~~~~~~-~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
|..|.+.+.|+-+-..+..-| +.+|+++|++|||+.+|-+|||.-.-.+ ....... ...++|.++-+.-|.+.+|.|
T Consensus 152 G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~-~~GRvda~vqS~dkNF~VPvG 230 (389)
T PF05889_consen 152 GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAW-RVGRVDAFVQSTDKNFMVPVG 230 (389)
T ss_dssp CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHH-HHSTCSEEEEEHHHHHCEESS
T ss_pred CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHH-hcCCcceeeeecCCCEEecCC
Confidence 567889999998888888766 9999999999999999999998732111 0000000 013589999999999999999
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCC--hHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---C
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFR--SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD---K 154 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---~ 154 (239)
-+++...++..+...... ..+|-+. .+.+...+..+|..++...+....++-.++.++|++. -
T Consensus 231 gai~As~~~~~i~~vs~~------------YpGRas~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee~ 298 (389)
T PF05889_consen 231 GAIMASFDPSGILAVSKE------------YPGRASASPSLDLFITLLSLGCTGYGALLKERKASFPYLKERLKKWAEEV 298 (389)
T ss_dssp HEEEEESSHHHHHHHHHT------------SHSHBTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEecCHHHHHHHHHH------------hhhhhhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888887776666544321 1233322 2555666778899999999998888888888888653 2
Q ss_pred CeEEEcCCCee-EEEEEEcC
Q 048438 155 RFEVVFPCHFA-VVCFRVSP 173 (239)
Q Consensus 155 g~~~~~~~~~~-iv~f~~~~ 173 (239)
+-.++..|.-. .+.|.++.
T Consensus 299 ~e~ll~~p~N~is~a~tl~~ 318 (389)
T PF05889_consen 299 GERLLETPRNHISMAFTLDT 318 (389)
T ss_dssp TEEBSSSTT-SSEEEEE-TT
T ss_pred hhhhcCCCCCCeeEEEECcc
Confidence 44444434322 45555543
No 218
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=98.62 E-value=2.6e-06 Score=74.00 Aligned_cols=188 Identities=14% Similarity=0.101 Sum_probs=98.9
Q ss_pred EEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438 6 LFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
.+|++....+++|.+.| +++|.++|+++|+++++|.+|.+..-...-+.....++. .|.+ ++.|.++.-...|
T Consensus 167 a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~-pdi~--t~sK~l~~G~~ig 243 (375)
T PRK04260 167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE-PDIF--TLAKGLANGVPVG 243 (375)
T ss_pred EEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCC-CCEE--EecccccCCcceE
Confidence 46666666777888765 899999999999999999998642111110010022332 6754 6799886433467
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh----CCCCeE
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS----GDKRFE 157 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~----~~~g~~ 157 (239)
.++.+ +++....... ....++ .+.+.........++.+..+++ .++..+..+++++.+. +.+.+.
T Consensus 244 ~~~~~-~~~~~~~~~~------~~~~t~-~~~~~~~~aa~a~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~ 312 (375)
T PRK04260 244 AMLAK-SSLGGAFGYG------SHGSTF-GGNKLSMAAASATLDIMLTAGF---LEQALENGNYLQEQLQKALQDKETVT 312 (375)
T ss_pred EEEEc-HHHHhhcCCC------CCCCCC-CcCHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHhhCCCee
Confidence 77764 3333222110 000011 1112222333344544433333 3333344455555443 332222
Q ss_pred EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
-+ +....++.+.+... ..++.+++.++|..+.+ .+...+|++++...|++
T Consensus 313 ~~-~~~g~~~~~~~~~~-------------------------~~~~~~~l~~~Gi~v~~----~~~~~lR~~~~~~~t~~ 362 (375)
T PRK04260 313 TV-RGLGYMIGIETTAD-------------------------LSQLVEAARDKGLIVLT----AGTNVIRLLPPLTLTKE 362 (375)
T ss_pred EE-eccceEEEEEecCc-------------------------HHHHHHHHHhCCCEEec----CCCCEEEEcCCCccCHH
Confidence 12 11344555555221 12667778888876543 24578999987777654
No 219
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=98.62 E-value=2.3e-06 Score=74.58 Aligned_cols=191 Identities=15% Similarity=0.046 Sum_probs=103.9
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
+-+|+.+..+|.||.+.| +++|+++|++||+++++|.+|+.....-...... +........+..++.|.++ ..|
T Consensus 167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G 245 (385)
T PRK09276 167 AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYN-MTG 245 (385)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcC-Ccc
Confidence 456667777899999888 5888889999999999999987543211000000 1111123466789999875 445
Q ss_pred --ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 80 --CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 80 --~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
+|+++. +++.+....... ... ......+....+...+ ...-+++..++..+..+++.+.|++. +
T Consensus 246 lRiG~~i~-~~~l~~~~~~~~-~~~---------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~ 313 (385)
T PRK09276 246 WRIGFAVG-NADLIAGLGKVK-SNV---------DSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-G 313 (385)
T ss_pred hhheeeeC-CHHHHHHHHHHH-hhc---------cCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 677764 333333221100 000 0000111111122222 22334555556667788899999886 7
Q ss_pred eEEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEEC--CEeEEEEEec
Q 048438 156 FEVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLG--GIYAIRFATG 231 (239)
Q Consensus 156 ~~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--g~~~lR~~~~ 231 (239)
+++.. +..+. +.+++++. . + ...+.+.|.+ .|.......... +..++|+++.
T Consensus 314 ~~~~~-~~~~~~~~v~~~~~-~---------------~-------~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~ 369 (385)
T PRK09276 314 LEVEP-PKATFYVWAPVPKG-Y---------------T-------SAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT 369 (385)
T ss_pred CcccC-CCcceEEEEECCCC-C---------------C-------HHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC
Confidence 77654 44443 55555432 1 0 1245566654 455544433332 3468999986
Q ss_pred C
Q 048438 232 A 232 (239)
Q Consensus 232 ~ 232 (239)
.
T Consensus 370 ~ 370 (385)
T PRK09276 370 V 370 (385)
T ss_pred C
Confidence 4
No 220
>PRK07682 hypothetical protein; Validated
Probab=98.61 E-value=1e-06 Score=76.60 Aligned_cols=192 Identities=14% Similarity=0.091 Sum_probs=106.8
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++.-+|.||.+.+ +++|+++|++|++++++|.+|+.....-+ ... .+.+...-.++..+++|.++.| .
T Consensus 155 ~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl 233 (378)
T PRK07682 155 TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGW 233 (378)
T ss_pred cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhh
Confidence 445556677899999865 88899999999999999999875433111 100 0112112457788999998654 2
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
-+|+++.. ++.+...... ..+.. .....+...++...+ +...+++..++..+..+++.+.|++. |+
T Consensus 234 R~G~~~~~-~~~i~~l~~~-------~~~~~---~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~ 301 (378)
T PRK07682 234 RLGFIAAP-VYFSEAMLKI-------HQYSM---MCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-GL 301 (378)
T ss_pred hhhhhhcC-HHHHHHHHHH-------HHhhc---cCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 27777763 3333322110 00000 001112222222222 33345566666778888899999886 77
Q ss_pred EEEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--CCEeEEEEEecC
Q 048438 157 EVVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--GGIYAIRFATGA 232 (239)
Q Consensus 157 ~~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--~g~~~lR~~~~~ 232 (239)
++. +++.+...+ .+++... + ...+.+.+. +.|..+...... .+..++|+++..
T Consensus 302 ~~~-~p~g~~~~~~~~~~~~~---------------~-------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~ 358 (378)
T PRK07682 302 TCH-VPGGAFYAFPSISSTGL---------------S-------SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT 358 (378)
T ss_pred ccC-CCCeeEEEEEeccCCCC---------------C-------HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC
Confidence 754 445554333 3322111 0 124555654 455554443322 236799999875
No 221
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=98.61 E-value=1.3e-06 Score=75.87 Aligned_cols=141 Identities=11% Similarity=0.107 Sum_probs=76.5
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc--ccCCCcccceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH--KWFFATLDCCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~P~g~g~ 82 (239)
+-+|+.+ +.+|...|+++|.++|+++|+++++|+||+.+.. .+. +. ... ..|.-++|+| |.+.+.. .|+
T Consensus 120 tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~-~~~-~~-~g~--~~~~~~~Sf~~~K~l~~g~-gG~ 190 (375)
T PRK11706 120 TRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST-YKG-RA-LGT--IGHIGCFSFHETKNYTAGE-GGA 190 (375)
T ss_pred CeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccc-cCC-ee-eec--CcCEEEEeCCCCccccccC-CeE
Confidence 3445444 3589999999999999999999999999998763 111 10 111 2466667776 9975433 344
Q ss_pred EEeeCcccccccc--cCC----CCccC-C-CCce-ecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438 83 LWATNPEYLKNKA--TES----KPVVD-Y-KDWQ-ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 83 l~~~~~~~l~~~~--~~~----~~~~~-~-~~~~-~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
+++.+++...... ... ..... . ..+. ...+..+..-.+.+++-....+.+++..++..+++++..+.|.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~ 270 (375)
T PRK11706 191 LLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAADRINQRRLALWQRYYDALAPL 270 (375)
T ss_pred EEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5554443322110 000 00000 0 0000 111222221112222211122456677777788999999999877
Q ss_pred C
Q 048438 154 K 154 (239)
Q Consensus 154 ~ 154 (239)
+
T Consensus 271 ~ 271 (375)
T PRK11706 271 A 271 (375)
T ss_pred C
Confidence 5
No 222
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=98.60 E-value=3.7e-06 Score=72.70 Aligned_cols=191 Identities=11% Similarity=0.037 Sum_probs=101.2
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc---cCC-CCCcceEEEcCcccCCCc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF---IDG-VEGADSFSLNAHKWFFAT 77 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~---~~~-~~~~Ds~~~~~hK~l~~P 77 (239)
+-+|+.+..+|.||.+.+ +++|.++|+++|+++++|.+|+.....-+..... ..+ ...-.+++.++.|.++.|
T Consensus 149 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 228 (364)
T PRK07865 149 PALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLA 228 (364)
T ss_pred ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCC
Confidence 456666777899998766 5788888999999999999987532211100000 000 001237788999997554
Q ss_pred c-cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 78 L-DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 78 ~-g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
. -+|+++. +++.+....... ....+. ...+....+...+.. +.+++..+...+..+++.+.|++. |
T Consensus 229 GlRiG~i~~-~~~~~~~~~~~~----~~~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 296 (364)
T PRK07865 229 GYRAGFVAG-DPALVAELLEVR----KHAGMM------VPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA-G 296 (364)
T ss_pred ceeeEEEec-CHHHHHHHHHHH----HhcCCC------cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 2 2555543 344333221100 000000 111222222222322 234455555667778888888875 7
Q ss_pred eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecC
Q 048438 156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGA 232 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~ 232 (239)
+.+. +++.++. +.+.... + ...+.+.|.++|..+....... +..++|+++..
T Consensus 297 ~~~~-~~~~~~~-~~~~~~~----------------~-------~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~ 350 (364)
T PRK07865 297 FRVD-HSEAGLY-LWATRGE----------------D-------CWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA 350 (364)
T ss_pred Cccc-CCCccEE-EEEeCCC----------------C-------HHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC
Confidence 7654 3444532 2222111 0 0134556666777655544332 35789999875
No 223
>PRK09082 methionine aminotransferase; Validated
Probab=98.59 E-value=1e-06 Score=76.87 Aligned_cols=155 Identities=11% Similarity=0.052 Sum_probs=86.6
Q ss_pred cEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCcc-
Q 048438 5 PLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
+-+|+++.-+|.||.+ .++++|.++|++||+++++|.+|+-....-...... ..+...-..+..++.|.++.|.
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~ 243 (386)
T PRK09082 164 TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGW 243 (386)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhh
Confidence 4566677778999986 678999999999999999999986443211111110 1122224577889999976552
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
-+|+++. .++.+...... .....+. ........+...+ ..+-+++..+...+..+++.+.|++. ++
T Consensus 244 RiG~iv~-~~~l~~~~~~~----~~~~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~ 311 (386)
T PRK09082 244 KVGYCVA-PAALSAEFRKV----HQYNTFT------VNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS-RF 311 (386)
T ss_pred hhhhhhC-CHHHHHHHHHH----HhhhcCC------CChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 2566664 33333222110 0000011 1111111111222 23445555566677788888999874 77
Q ss_pred EEEcCCCeeE-EEEEEc
Q 048438 157 EVVFPCHFAV-VCFRVS 172 (239)
Q Consensus 157 ~~~~~~~~~i-v~f~~~ 172 (239)
++. +++.+. +.++++
T Consensus 312 ~~~-~~~g~~~~~~~~~ 327 (386)
T PRK09082 312 KLL-PCEGTYFQLVDYS 327 (386)
T ss_pred ccc-CCCeeEEEEEecc
Confidence 754 455554 445664
No 224
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=98.59 E-value=5.2e-06 Score=73.13 Aligned_cols=193 Identities=11% Similarity=0.040 Sum_probs=102.1
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-ccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-TLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g 79 (239)
+.+|++--...+.|.+-| +++|.++|++||+++++|..|.+.--....+.....++. .|.++++ |++++ -..
T Consensus 195 ~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~-PDi~~~~--K~lg~~G~p 271 (412)
T TIGR02407 195 PAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIE-PDIVCLS--KSISGYGLP 271 (412)
T ss_pred eEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCC-CCEEEec--hhccCCccc
Confidence 456665555556676432 899999999999999999998743111110000023443 8988765 99864 444
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHhC----CC
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRN-YGMENLRHFLRSHVNMARLFERLVSG----DK 154 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~g~~~~~~~~~~la~~l~~~l~~----~~ 154 (239)
+|++++++ +. ...... ....++ .+.+.......++++. +..+.+. ++..++.+++.++|++ .+
T Consensus 272 igav~~~~-~~-~~~~~~------~~~~T~-~gnpl~~aaa~a~l~~~i~~~~l~---~~~~~~g~~l~~~l~~l~~~~~ 339 (412)
T TIGR02407 272 LALTLIKP-EL-DVWKPG------EHNGTF-RGNNLAFVTATAALEYYWSDDAFE---KAVQRKSEIIQERLDRIVAEYP 339 (412)
T ss_pred eeEEEEch-hh-hccCCC------ccCCCC-CccHHHHHHHHHHHHHHhcccHHH---HHHHHHHHHHHHHHHHHHhhCC
Confidence 78888754 22 211100 000111 1111111222344553 4444343 3444666677666653 33
Q ss_pred CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
++..-......++.+.+++ ......+.+.+.++|.++.. .. .+...||+++.-..
T Consensus 340 ~~~~~vrg~Gl~~~l~l~~-----------------------~~~~~~~~~~~~~~Gv~v~~-~~-~~~~~lr~~p~l~~ 394 (412)
T TIGR02407 340 ELIKQVRGRGLMQGIECGD-----------------------GDLAGKIAKAAFENGLIIET-SG-PNDEVIKLLPPLTI 394 (412)
T ss_pred CceEeeecceeEEEEEecC-----------------------hHHHHHHHHHHHHCCCEEec-cC-CCCCEEEEECCCCC
Confidence 2221111223455666643 12334677788888866532 21 12467999987776
Q ss_pred CCc
Q 048438 235 TEE 237 (239)
Q Consensus 235 t~~ 237 (239)
|++
T Consensus 395 t~~ 397 (412)
T TIGR02407 395 DEE 397 (412)
T ss_pred CHH
Confidence 654
No 225
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=98.58 E-value=5.1e-06 Score=72.53 Aligned_cols=79 Identities=18% Similarity=0.048 Sum_probs=49.1
Q ss_pred cEEEEEecCCCCcccc----cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAV----DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i----~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+.+|++....+.+|.+ +.+++|.++|++||+++++|.+|.+.......+.....++. .|.+ ++.|.+++-...
T Consensus 176 ~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~-pdi~--t~sK~l~~G~~i 252 (389)
T PRK01278 176 TAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVT-PDIM--AVAKGIGGGFPL 252 (389)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCC-CCEE--EEehhccCCcce
Confidence 4566666556666733 47999999999999999999999743211110000012333 6755 457998643346
Q ss_pred eEEEee
Q 048438 81 CCLWAT 86 (239)
Q Consensus 81 g~l~~~ 86 (239)
|.++.+
T Consensus 253 g~~~~~ 258 (389)
T PRK01278 253 GACLAT 258 (389)
T ss_pred EEEEEc
Confidence 776664
No 226
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=98.58 E-value=1.9e-06 Score=76.71 Aligned_cols=198 Identities=13% Similarity=0.018 Sum_probs=112.2
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
...+|++--...+.|.+.| ++++.++|++||+.+++|.+|.+.--...-+.....++. .|.+++ -|.+++- .
T Consensus 231 ~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~-PDivt~--gK~lggG~~ 307 (459)
T PRK11522 231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQ-PDILCL--AKALGGGVM 307 (459)
T ss_pred cEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCC-CCEEEe--chhhhCCCc
Confidence 4567777777777899888 999999999999999999999642111111111123443 887754 7998753 2
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~ 157 (239)
.+|.++.++ +........ . . ...+...+.+.......++++.+..+. ..++..++.++|.+.|+++. .+.
T Consensus 308 Pigav~~~~-~i~~~~~~~-~--~--~~~~T~~gnp~~~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~ 378 (459)
T PRK11522 308 PIGATIATE-EVFSVLFDN-P--F--LHTTTFGGNPLACAAALATINVLLEQN---LPAQAEQKGDYLLDGFRQLAREYP 378 (459)
T ss_pred cceeEEEcH-HHHHHhccC-C--c--ccCCCCCCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356677653 333221100 0 0 000111122233333445566554443 44566688889988887641 121
Q ss_pred -EEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 158 -VVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 158 -~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
++.. ....++.+.+... +....+.+.|.++|.+. ... ..+..++|+++....
T Consensus 379 ~~i~~VrG~Gl~~giel~~~-----------------------~~~~~i~~~l~~~Gvl~-~~~-~~~~~~lr~~Ppl~~ 433 (459)
T PRK11522 379 DLVQEARGKGMLMAIEFVDN-----------------------EIGYNFASEMFRQRVLV-AGT-LNNAKTIRIEPPLTL 433 (459)
T ss_pred CceeeEEeceeEEEEEecCc-----------------------hHHHHHHHHHHHCCeEE-Eec-CCCCCEEEEECCccC
Confidence 2222 1234666666431 22346777888877554 332 224578999987766
Q ss_pred CCcC
Q 048438 235 TEER 238 (239)
Q Consensus 235 t~~~ 238 (239)
|++|
T Consensus 434 t~~~ 437 (459)
T PRK11522 434 TIEQ 437 (459)
T ss_pred CHHH
Confidence 6543
No 227
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.57 E-value=5e-06 Score=73.65 Aligned_cols=206 Identities=14% Similarity=0.083 Sum_probs=109.0
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+.+++++..+|.||.+.| +++|+++|+++|+++++|.+++............ +.... -=.+..++.|.+..| .
T Consensus 191 ~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~-~vi~~~S~SK~~~~pG~ 269 (430)
T PLN00145 191 TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVA-PVLTLGSISKRWVVPGW 269 (430)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccC-cEEEEeccccccCCCCe
Confidence 456777778999999998 7888999999999999999986533211111110 11111 124566999996555 3
Q ss_pred cceEEEeeCcc-cccccccCCCCccCCCCceecCCC-CCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 79 DCCCLWATNPE-YLKNKATESKPVVDYKDWQITLSR-SFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 79 g~g~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
-+|.++...+. .+....... ...... ....+. .+....+..+++.-..+-+++..+...+..+.+.+.|++++++
T Consensus 270 RlG~iv~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~ 346 (430)
T PLN00145 270 RLGWIATCDPNGILKETKVVD-SIRNYL--NISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCI 346 (430)
T ss_pred eEEEEEEecchhhhhhhHHHH-HHHHHh--cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36777664332 111100000 000000 000000 0111122222332113445677777778888999999988888
Q ss_pred EEEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEECCEeEEEEEecC
Q 048438 157 EVVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 157 ~~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
.....| ..+-+.++++.... ... .....+..+|.+ +|.+.++........++|+++..
T Consensus 347 ~~~~~P~ga~y~~v~l~~~~~--------------~~~----~~~~~~~~~ll~~~gV~v~pG~~fg~~~~lRis~~~ 406 (430)
T PLN00145 347 TCPHKPEGSMFVMVKLDLSCL--------------SGI----KDDMDFCCKLAKEESVVVLPGSALGMKNWLRITFAI 406 (430)
T ss_pred CCCcCCCeeeEEEeccChhhc--------------CCC----CCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC
Confidence 754434 34444455432100 000 001244544544 45555555555556899999874
No 228
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=98.57 E-value=2e-06 Score=75.09 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=79.2
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc-----ce
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-----CC 81 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-----~g 81 (239)
+-|+..-.|..|.+.++++|++++|++|..+++ +|--.....+.... .+ ++|.+ ++.||-|+.|.| +|
T Consensus 199 a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pg----e~-GADI~-vg~~Q~fg~p~~~GGP~~G 271 (429)
T PF02347_consen 199 AAVMVQNPNTFGVFEDIKEIADIAHAAGALVIV-GADPNALGGLKSPG----EY-GADIV-VGEHQTFGIPMGFGGPGAG 271 (429)
T ss_dssp EEEEEESS-TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GG----GG-T-SEE-EECCTTTT---CCC-S--E
T ss_pred EEEEeecCCCCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChh----hc-CccEE-eeCCCCCcccCCCCCCCee
Confidence 344455566799999999999999999999988 76332211111111 11 49999 566999888854 67
Q ss_pred EEEeeCcccccccccC-CCCccC---CCCceecCC------CC--C-------C---hHHHHHHHHHhCHHHHHHHHHHH
Q 048438 82 CLWATNPEYLKNKATE-SKPVVD---YKDWQITLS------RS--F-------R---SLKLWFVIRNYGMENLRHFLRSH 139 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~-~~~~~~---~~~~~~~~~------~~--~-------~---~~~~~~~l~~~g~~g~~~~~~~~ 139 (239)
++-+++ .+.+..... -+...| ...+.+... || . . ++..+..+..+|.+|+++..++.
T Consensus 272 ~~a~~~-~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~ 350 (429)
T PF02347_consen 272 FFAVRE-DLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERI 350 (429)
T ss_dssp EEEE-G-GGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEhh-hhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 777765 343332210 000000 011221111 11 1 1 12333456788999999999999
Q ss_pred HHHHHHHHHHHhCCCCeE
Q 048438 140 VNMARLFERLVSGDKRFE 157 (239)
Q Consensus 140 ~~la~~l~~~l~~~~g~~ 157 (239)
...+.|+.++|+++.++.
T Consensus 351 ~~~A~yl~~~L~~~~~~~ 368 (429)
T PF02347_consen 351 HLNAHYLAERLKKIYGLP 368 (429)
T ss_dssp HHHHHHHHHHHCCTTBEC
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 999999999999873443
No 229
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=98.57 E-value=2.9e-06 Score=76.43 Aligned_cols=208 Identities=11% Similarity=0.005 Sum_probs=108.2
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
.+.+|++--...+.|.+.| +++|.++|++||+++++|.+|.+.--...-+.....++. .|.+++ -|.+++-+
T Consensus 260 ~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~-PDivtl--gK~lggG~~ 336 (504)
T PLN02760 260 TIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIK-PDLVSL--AKALSSAYM 336 (504)
T ss_pred ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCC-CcEEEe--cccccCCcc
Confidence 3556666666667788888 999999999999999999999443121221111123554 897665 79886521
Q ss_pred cceEEEeeCcccccccccCCC--CccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 79 DCCCLWATNPEYLKNKATESK--PVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
..|.+++++ +.......... ..+. ...++ .+.+.......++|+.+..+ +..++..++.++|++.|+++...
T Consensus 337 PigAv~~~~-~i~d~~~~~~~~~~~~~-h~~T~-~gnPl~~Aaala~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~~ 410 (504)
T PLN02760 337 PIGAVLVSP-EISDVIHSQSNKLGSFA-HGFTY-SGHPVSCAVALEALKIYKER---NIPEHVNKIAPRFQDGIKAFSGS 410 (504)
T ss_pred ccceEeecH-HHHhhhhcccccccCcc-cCCCC-CCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcC
Confidence 245566543 33222111000 0000 11111 12222223333445544333 45666778889999988765222
Q ss_pred EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
.++.+. .--++.+.+...... . ........+...+.+.+.++|.+... .| ..+|+++.--.
T Consensus 411 ~~v~~vrG~Gl~~gie~~~~~~~---------~---~~~~~~~~~~~~i~~~~~~~Gvl~~~----~g-~~lrl~Ppl~i 473 (504)
T PLN02760 411 PIIGEIRGTGLILGTEFVDNKSP---------N---DPFPAEWGVGAYFGAECKKRGMLVRV----AG-DNIMMSPPLII 473 (504)
T ss_pred CCeeeEEeCceEEEEEEecCCcc---------c---ccccchhHHHHHHHHHHHhCCcEEEe----cC-CEEEEECCCCC
Confidence 222211 123555555432100 0 00000123455777888888876543 23 46788865555
Q ss_pred CCc
Q 048438 235 TEE 237 (239)
Q Consensus 235 t~~ 237 (239)
|++
T Consensus 474 t~e 476 (504)
T PLN02760 474 TPE 476 (504)
T ss_pred CHH
Confidence 544
No 230
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=1e-06 Score=75.77 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=92.2
Q ss_pred CCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCccccccc
Q 048438 15 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNK 94 (239)
Q Consensus 15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~~ 94 (239)
...|...++++|.++|++||++++-|+||+.|..--.+. +-.+..+-+++|-++|.+.+- ..|.+..++++.....
T Consensus 130 hl~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~---vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~ 205 (374)
T COG0399 130 HLAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKGKK---VGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKA 205 (374)
T ss_pred hhccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecCcc---cccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHH
Confidence 357888899999999999999999999999886533221 222334778899999998665 4566666665433222
Q ss_pred cc--CCCCcc--CCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 95 AT--ESKPVV--DYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 95 ~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
.. ..+... ....+....|-+++--.+.+++.....+.++++.++..+++++..+.|++.+++.+..+
T Consensus 206 ~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~ 276 (374)
T COG0399 206 RSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPE 276 (374)
T ss_pred HHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Confidence 10 011111 11112223344444444444444445577788888889999999999999877665443
No 231
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=98.56 E-value=3e-06 Score=75.23 Aligned_cols=203 Identities=12% Similarity=0.139 Sum_probs=104.2
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
.+.+|++--...+.|.+-| +++|.++|++||+++++|.+|.+.--...-+.....++. .|.+++ -|.+++- .
T Consensus 215 ~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PDivt~--gK~l~gG~~ 291 (442)
T PRK13360 215 TIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVT-PDLLTC--AKGLTNGAI 291 (442)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCC-Cceeee--eeccccCcc
Confidence 3556666666677899988 999999999999999999999432111111110123443 887754 7988642 2
Q ss_pred cceEEEeeCcccccccccCCCCccC-CCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVD-YKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
.+|.+..++ +.............. ....++. +.+.......++++.+..++ ..++..++.+++.+.|+++..+.
T Consensus 292 P~gav~~~~-~i~~~~~~~~~~~~~~~~~~T~~-g~pl~~aaa~a~L~~l~~~~---l~~~~~~~g~~l~~~l~~l~~~~ 366 (442)
T PRK13360 292 PMGAVFVSS-EIHDAFMQGPEAGIEFFHGYTYS-GHPLACAAALATLDLYEREG---LLTRAARLAPYWEDALHSLRDAP 366 (442)
T ss_pred ceEEEEEcH-HHHHHhhcCCccccccccCCCCC-CCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhcCC
Confidence 245555543 332211110000000 0111211 22222333334555554333 44566688888888887653222
Q ss_pred EEcCCC-ee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 158 VVFPCH-FA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 158 ~~~~~~-~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
.+.+.. .+ ++.+.+.+... .+ .+....+.++|.++|.+... .+ ..+|+++....|
T Consensus 367 ~v~~vrG~Gl~~~~~l~~~~~--------------~~----~~~~~~~~~~l~~~Gvl~~~----~~-~~lr~~Ppl~~t 423 (442)
T PRK13360 367 HVIDIRNLGLVGAVELAPRDG--------------KP----GKRAYEVFLKCFEKGLMIRY----TG-DILALSPPLIIE 423 (442)
T ss_pred CeeeeeccceEEEEEEecCCC--------------Cc----chhHHHHHHHHHHCCcEEEe----cC-CEEEEeCCCccC
Confidence 222211 11 22333322110 01 11223566677777765432 22 579999777666
Q ss_pred Cc
Q 048438 236 EE 237 (239)
Q Consensus 236 ~~ 237 (239)
++
T Consensus 424 ~~ 425 (442)
T PRK13360 424 EA 425 (442)
T ss_pred HH
Confidence 54
No 232
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=98.56 E-value=3.4e-06 Score=72.07 Aligned_cols=187 Identities=11% Similarity=0.048 Sum_probs=105.9
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccC-cccccccCCCCCcceEEEcCcccCCCc-cc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIF-PEFRHFIDGVEGADSFSLNAHKWFFAT-LD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~-~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g 79 (239)
+-+|+++.-+|.||.+.+ +++|.++|+++++++++|.+++-..... +.........+ -=.++.++.|.++.| .=
T Consensus 123 ~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~-~vi~~~SfSK~~~l~GlR 201 (332)
T PRK06425 123 FDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYG-NVIIGRSLTKILGIPSLR 201 (332)
T ss_pred CCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCC-CEEEEeecHHhcCCchhh
Confidence 445666678899999877 5667777899999999999986432211 00000111111 124567999997744 22
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMEN-LRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g-~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
+|.++. .++.+....... ..+.. .... ..++.....+. +++..+...+..+++.+.|++. |+++
T Consensus 202 iGy~v~-~~~li~~l~~~~------~~~~~------~~~~-~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~ 266 (332)
T PRK06425 202 IGYIAT-DDYNMKISRKIT------EPWSV------CDPA-IDFIRSIDLDYVAKHSLDIMENERSYLINNLEAM-GFRA 266 (332)
T ss_pred heeeec-CHHHHHHHHHcC------CCCcc------CHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEE
Confidence 566665 333333221100 01111 1111 11222222222 2345566667778899999886 7887
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecCC
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGAT 233 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~ 233 (239)
..++..+-+.+++++ ...+.+.|.++|.......... |..++|+++..+
T Consensus 267 ~~~~~g~f~~~~~~~--------------------------~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~~~ 317 (332)
T PRK06425 267 AGDPSANFITFMIPD--------------------------AHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIRRR 317 (332)
T ss_pred CCCCCceEEEEEcCC--------------------------HHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeCCH
Confidence 656677777776641 1256667777776655544332 346999998764
No 233
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=98.56 E-value=7e-06 Score=71.70 Aligned_cols=188 Identities=11% Similarity=0.024 Sum_probs=95.9
Q ss_pred cEEEEEecCCCCccc-c---cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITA-V---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~-i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+.+|++....+.+|. . +.+++|.++|++||+++++|.+|++.............++. .|.++ +.|.+++....
T Consensus 183 ~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~-pdi~t--~sK~~~~G~ri 259 (396)
T PRK02627 183 TAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIE-PDIMT--LAKGLGGGVPI 259 (396)
T ss_pred eEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCC-CCEEE--EcchhhCCccc
Confidence 456666665666773 2 23899999999999999999998743111110000012332 67665 56998754557
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CCe
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KRF 156 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g~ 156 (239)
|.++..+ +........ .... + .++..........+++.+..+ +..++..++.+++++.|.+. +.+
T Consensus 260 g~~~~~~-~~~~~~~~~----~~~~--t-~~~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~ 328 (396)
T PRK02627 260 GAVLAKE-KVADVFTPG----DHGS--T-FGGNPLACAAALAVIEIIEEE---GLLENAAEVGEYLRAKLRELLEKYPGI 328 (396)
T ss_pred EEEEEcH-HHHhccCCC----CCCC--C-CCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7777643 333222110 0000 1 011112222233344433222 33444556666666666543 222
Q ss_pred EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
..+ .....++.+.+... ...+.++|.++|.++.. .+..++|+++....|+
T Consensus 329 ~~~-~~~g~~~~i~~~~~-------------------------~~~~~~~l~~~Gv~v~~----~~~~~lRi~~~~~~~~ 378 (396)
T PRK02627 329 KEV-RGLGLMIGIELDRP-------------------------AAEIVKKALEKGLLINV----TGDNVLRLLPPLIISK 378 (396)
T ss_pred eee-ccCcEEEEEEecCc-------------------------HHHHHHHHHHCCeEEee----cCCCEEEEECCcccCH
Confidence 211 22345566665211 13667777777655433 2346799987644443
No 234
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=98.56 E-value=2.6e-06 Score=74.20 Aligned_cols=190 Identities=13% Similarity=0.003 Sum_probs=108.9
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC 82 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~ 82 (239)
.+-+|+++..+|.||.+.|.+++.++++.. +++++|.+|.-.... ......+... .-.++..++.|.++.| .-+|+
T Consensus 175 ~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~-~~~~~~~~~~-~~viv~~SfSK~~glaGlRiGy 251 (380)
T PLN03026 175 KPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQ-ESRMKWVKKY-DNLIVLRTFSKRAGLAGLRVGY 251 (380)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCC-cchHHHHHhC-CCEEEEecchHhhcCcccccee
Confidence 345677778899999999999999999865 999999998633210 0010111111 1346788999997533 22555
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
++. .++.+....... ..+. ...+....+...+. .+-+++..+...+..+++.+.|++++++++ .+
T Consensus 252 ~~~-~~~~i~~l~~~~------~~~~------~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p 317 (380)
T PLN03026 252 GAF-PLSIIEYLWRAK------QPYN------VSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKEVPFLEP-YP 317 (380)
T ss_pred eec-CHHHHHHHHHhc------CCCC------CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-CC
Confidence 553 334443221100 0011 11222222222221 223445555666777888899988755554 46
Q ss_pred CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
+..+.+.+.+++.. + ...+.+.|.++|..........+..++|+++..+
T Consensus 318 ~~~~f~~~~~~~~~----------------~-------~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~~~ 366 (380)
T PLN03026 318 SDANFILCRVTSGR----------------D-------AKKLKEDLAKMGVMVRHYNSKELKGYIRVSVGKP 366 (380)
T ss_pred CCCeEEEEECCCCC----------------C-------HHHHHHHHHHCCeEEEECCCCCCCCEEEEecCCH
Confidence 67788878775311 0 1256667776776544332223456899998853
No 235
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=98.55 E-value=4.5e-06 Score=73.16 Aligned_cols=201 Identities=10% Similarity=-0.019 Sum_probs=107.2
Q ss_pred EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-Ccc-eEEEcCcccCCCc-cc
Q 048438 6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GAD-SFSLNAHKWFFAT-LD 79 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~D-s~~~~~hK~l~~P-~g 79 (239)
-+|+++.-+|.||.+.+ +++|+++|+++|+++++|.++......-..... +..+. ... +++.++.|.++.| .-
T Consensus 170 ~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~vi~~~SfSK~~~~~GlR 248 (401)
T TIGR01264 170 AALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEP-LASLSSTVPILSCGGLAKRWLVPGWR 248 (401)
T ss_pred eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCccccc-HHHcCCCCcEEEEccCcccCCCccce
Confidence 45566777899999865 888999999999999999998753321111111 11111 112 5678999974444 33
Q ss_pred ceEEEeeCc-----ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 80 CCCLWATNP-----EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 80 ~g~l~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
+|+++..++ ..+....... . ..+.. + ......+...+.....+-+++..+...+..+++.+.|++.+
T Consensus 249 iG~iv~~~~~~~~~~~~~~~~~~~----~-~~~~~--~-~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~ 320 (401)
T TIGR01264 249 LGWIIIHDRRGILRDIRDGLVKLS----Q-RILGP--C-TIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVP 320 (401)
T ss_pred EEEEEecCcchhHHHHHHHHHHHh----h-ccCCC--C-cHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 777776432 1111110000 0 00000 0 11111122223221234455566667777788889998877
Q ss_pred CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEECCEeEEEEEecCC
Q 048438 155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
|+.+..|...+-+.++++..... .. .-...+.+++. +.|..+..........++|+++..+
T Consensus 321 ~~~~~~p~~g~f~~~~~~~~~~~-------------~~-----~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iRis~~~~ 382 (401)
T TIGR01264 321 GLRPVMPSGAMYMMVGIEMEHFP-------------EF-----KNDVEFTERLVAEQSVFCLPGSCFEYPGFFRVVLTVP 382 (401)
T ss_pred CCcccCCCeeeEEEEEecccccC-------------CC-----CCHHHHHHHHHHhCCEEEeCchhcCCCCeEEEEEcCC
Confidence 77655455555666665421000 00 00124556665 4566555444443456899998764
No 236
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=98.54 E-value=5.6e-06 Score=72.89 Aligned_cols=202 Identities=11% Similarity=0.032 Sum_probs=106.2
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-Cc-ceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GA-DSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~-Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++.-+|.||.+.+ +++|+++|+++|+++++|.++......-..... ...+. .. -.++.++.|.++.| .
T Consensus 178 ~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~~i~~~SfSK~~~~pGl 256 (412)
T PTZ00433 178 TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTS-VADFDTTVPRVILGGTAKNLVVPGW 256 (412)
T ss_pred ceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccc-hhhccCCCceEEEccchhhcCCCCe
Confidence 445667778899998665 777899999999999999998743221111110 11111 11 24577999997544 4
Q ss_pred cceEEEeeCc-----ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438 79 DCCCLWATNP-----EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 79 g~g~l~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
-+|.+++.+| +++...... .... .+........+..++..-...-+++..++..+..+.+.+.|++.
T Consensus 257 RlG~~i~~~p~~~~~~~~~~~~~~-------~~~~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 328 (412)
T PTZ00433 257 RLGWLLLVDPHGNGGDFLDGMKRL-------GMLV-CGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGEC 328 (412)
T ss_pred eEEEEEEeCCcccHHHHHHHHHHH-------hhcc-CCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4777776322 222211100 0000 00001111111122221112334555556667778888888876
Q ss_pred CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEECCEeEEEEEecC
Q 048438 154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
.++.+..+...+-+.++++..... +. .-...+.+.|.+ .|..+..........++|+++..
T Consensus 329 ~~~~~~~p~gg~f~~~~l~~~~~~--------------~~----~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~ 390 (412)
T PTZ00433 329 IGLSPTMPRGSMFLMSRLDLEKFR--------------DI----KSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR 390 (412)
T ss_pred CCCcccCCCeeEEEEEEechhhcC--------------CC----CCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEecC
Confidence 677655343445566666531000 00 001256667664 56655554444335689999875
Q ss_pred C
Q 048438 233 T 233 (239)
Q Consensus 233 ~ 233 (239)
+
T Consensus 391 ~ 391 (412)
T PTZ00433 391 P 391 (412)
T ss_pred C
Confidence 4
No 237
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=98.54 E-value=2.5e-06 Score=74.93 Aligned_cols=194 Identities=11% Similarity=0.036 Sum_probs=102.0
Q ss_pred cEEEEEecCCCCccc----ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITA----VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~----i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+.+|++.-...+.|. ...+++|.++|++||+++++|.+|.+......-+.....++. .|.+ ++.|.+++-...
T Consensus 184 ~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~-pDi~--t~sK~l~gG~~i 260 (406)
T PRK12381 184 TCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVT-PDVL--TTAKALGGGFPI 260 (406)
T ss_pred eeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCC-CCEE--EehhhhhCCCce
Confidence 345555544444553 456899999999999999999998543111110100122333 7765 557998643446
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~ 159 (239)
|.+..+ +++....... ....++ .+.+........+++.+.. ++..++..++.+++.+.|+++. .+.++
T Consensus 261 g~~~~~-~~~~~~~~~~------~~~~t~-~~~pl~~aaa~a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 329 (406)
T PRK12381 261 GAMLTT-EKCASVMTVG------THGTTY-GGNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINARYGLF 329 (406)
T ss_pred EEEEEc-HHHHhhcCCC------CCCCCC-CCCHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 666654 3333222110 000111 1222223333344544432 2455666688888888887651 12222
Q ss_pred cCC-C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 FPC-H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~~~-~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
... . .-++.+.+++.. ......+.+.+.++|.+... .+...+|+++....|++
T Consensus 330 ~~vrg~Gl~~~~~l~~~~---------------------~~~~~~~~~~l~~~Gv~v~~----~g~~~lRl~p~~~~t~~ 384 (406)
T PRK12381 330 SEIRGLGLLIGCVLNAEY---------------------AGKAKQISQEAAKAGVMVLI----AGPNVVRFAPALNISEE 384 (406)
T ss_pred EEEecCeEEEEEEecCch---------------------hhHHHHHHHHHHHCCcEEee----CCCCEEEEeCCccCCHH
Confidence 221 1 223444443310 12334677778888876542 24468999987656544
No 238
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=98.53 E-value=2.4e-06 Score=73.67 Aligned_cols=188 Identities=11% Similarity=0.037 Sum_probs=105.8
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccc--cccCCCCCcceEEEcCcccCCCc-cc
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFR--HFIDGVEGADSFSLNAHKWFFAT-LD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~--~~~~~~~~~Ds~~~~~hK~l~~P-~g 79 (239)
+-+|+++..+|.||.+.|.++|.++++. +|+++++|.+|......-.... ...... .-.++..++.|.++.| .-
T Consensus 152 ~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~vi~~~S~SK~~g~~GlR 230 (359)
T PRK03158 152 TKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKY-ENLIVLRTFSKAYGLAALR 230 (359)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhc-CCEEEEEechHhhcCcchh
Confidence 3455667789999999999999999987 5999999999875432111000 011111 1456778999997644 22
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
+|+++. +++.+....... ..+. ...+....+...+.. +-+++..+...+..+++.+.|.+. ++.+
T Consensus 231 iG~~v~-~~~~~~~~~~~~------~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 296 (359)
T PRK03158 231 VGYGIA-SEELIEKLNIAR------PPFN------TTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY-GLFY 296 (359)
T ss_pred hehhcC-CHHHHHHHHHhc------CCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence 476664 334333221100 0011 122333333333322 223444444556677788888876 7776
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
+ ++..+.+.+.++.. ...+.+.|.++|..+.+........++|+++..+
T Consensus 297 ~-~~~g~~i~~~~~~~-------------------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~~ 345 (359)
T PRK03158 297 Y-PSQTNFIFVDTGRD-------------------------ANELFEALLKKGYIVRSGAALGFPTGVRITIGLK 345 (359)
T ss_pred C-CCcCcEEEEECCCC-------------------------HHHHHHHHHHCCeEEeeCCCCCCCCeEEEecCCH
Confidence 4 55555555554211 1255666766776555443333356899997743
No 239
>PRK08175 aminotransferase; Validated
Probab=98.53 E-value=3.9e-06 Score=73.44 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=105.6
Q ss_pred cEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+.+..+|.+|.+.+. ++|+++|++||+++++|.+++-....-...... +.+......++.++.|.++.| .
T Consensus 165 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGl 244 (395)
T PRK08175 165 PKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGW 244 (395)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcch
Confidence 4566667678999998887 788999999999999999986432211000000 111111335678999998655 2
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
-+|+++. +++.+...... .....++ ...........++.. ...-+++..+...+..+++.+.|++. ++.+
T Consensus 245 RiG~~~~-~~~l~~~~~~~----~~~~~~~---~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~ 314 (395)
T PRK08175 245 RIGFMVG-NPELVSALARI----KSYHDYG---TFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEA-GWMV 314 (395)
T ss_pred hheeeeC-CHHHHHHHHHH----HhhcccC---CCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence 2566654 44443322110 0000000 001111111222221 22334445555667778888999886 7776
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG 231 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~ 231 (239)
..+...+.+.++++..... .+ ...+.+.+.+ .|....+.... .+..++|+++.
T Consensus 315 ~~p~~g~~i~i~l~~~~~~-------------~~-------~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~ 370 (395)
T PRK08175 315 EMPKASMYVWAKIPEPYAA-------------MG-------SLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI 370 (395)
T ss_pred cCCCEEEEEEEECCcccCC-------------CC-------HHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC
Confidence 5455566777777642100 00 1255555554 45544443333 23468999975
No 240
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=98.52 E-value=9.8e-06 Score=71.98 Aligned_cols=197 Identities=15% Similarity=0.080 Sum_probs=108.3
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|++--...+.|.+.| +++|.++|++||+.+++|.+|.+.-....-+.....++. .|.+++ .|.+++-..
T Consensus 221 ~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~-pDivt~--~K~l~~G~p 297 (441)
T PRK05769 221 EVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVE-PDIITL--AKAIAGGLP 297 (441)
T ss_pred ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCC-CCEEEE--cccccCCcc
Confidence 3556666666677889889 999999999999999999998852111110000012343 798876 488876555
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~ 158 (239)
.|.++.++ ++.... .. ....++ .+.+........+++.+.. +..++..++.++|++.|+++. ...+
T Consensus 298 ~gav~~~~-~i~~~~-~~------~~~~T~-~g~p~~~aaa~a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~~~~ 364 (441)
T PRK05769 298 LGAVIGRA-ELMFLP-PG------SHANTF-GGNPVAAAAALATLEELEE----GLLENAQKLGEYLRKELKELKEKYEF 364 (441)
T ss_pred cEEEEEeh-hhhhcC-CC------CCCCCC-CcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777653 332211 10 000111 1222222333334444422 455666688888888886541 1222
Q ss_pred EcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 159 VFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 159 ~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
+... ...++.+.+..... .. ..+....+.+.+.++|.+... .|...+|+++....|+
T Consensus 365 ~~~vrg~G~~~~i~~~~~~~--------------~~---~~~~~~~~~~~~~~~Gil~~~----~~~~~lr~~p~l~~t~ 423 (441)
T PRK05769 365 IGDVRGLGLMIGVELVKDRK--------------EP---DPKLRDKVLYEAFKRGLLLLG----AGKSAIRIIPPLIITE 423 (441)
T ss_pred eeeeecceEEEEEEeccCCc--------------cc---cHHHHHHHHHHHHhCCcEEec----CCCCEEEEeCCCCCCH
Confidence 2221 23355555533210 00 023445677778888866432 3557899997665554
Q ss_pred c
Q 048438 237 E 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 424 ~ 424 (441)
T PRK05769 424 E 424 (441)
T ss_pred H
Confidence 4
No 241
>PLN00175 aminotransferase family protein; Provisional
Probab=98.52 E-value=5.7e-06 Score=72.87 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=107.1
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++..+|.||.+.+ +++|+++|++|++|+++|.+|......-+ .... +.+...-.+++.++.|.++.| .
T Consensus 188 ~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~~vi~i~SfSK~~~~~G~ 266 (413)
T PLN00175 188 TRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYERTVTMNSLGKTFSLTGW 266 (413)
T ss_pred ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcCcEEEEecchhhccCcch
Confidence 446677788899999865 77789999999999999999875433111 1110 112112346778999998755 2
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
-+|+++. .+..+...... .....+. .+ .+....+..+++. +..-+++..++..+..+++.+.|++. |+++
T Consensus 267 RiG~~v~-~~~l~~~l~~~----~~~~~~~--~s-~~~Q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 336 (413)
T PLN00175 267 KIGWAIA-PPHLTWGVRQA----HSFLTFA--TA-TPMQWAAVAALRA-PESYYEELKRDYSAKKDILVEGLKEV-GFKV 336 (413)
T ss_pred heeeeEe-CHHHHHHHHHH----HhhccCC--CC-HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence 3566665 33333222100 0000000 00 1111112222322 33345666667777888899999886 7876
Q ss_pred EcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE-----CCEeEEEEEec
Q 048438 159 VFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL-----GGIYAIRFATG 231 (239)
Q Consensus 159 ~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~-----~g~~~lR~~~~ 231 (239)
. +++.+. +.+++.+.+.. -...+.+.|.+ .|..+.+.... .+..++|+++.
T Consensus 337 ~-~p~g~~f~~~~~~~~~~~---------------------~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~ 394 (413)
T PLN00175 337 Y-PSSGTYFVMVDHTPFGFE---------------------NDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC 394 (413)
T ss_pred c-CCCeeEEEEEeccccCCC---------------------CHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc
Confidence 5 444443 44444321110 01255566654 46665554433 23568999987
Q ss_pred C
Q 048438 232 A 232 (239)
Q Consensus 232 ~ 232 (239)
.
T Consensus 395 ~ 395 (413)
T PLN00175 395 K 395 (413)
T ss_pred C
Confidence 4
No 242
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=98.52 E-value=4.5e-06 Score=75.14 Aligned_cols=202 Identities=12% Similarity=0.033 Sum_probs=103.7
Q ss_pred CccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCCC--C--cc--eEEEcC
Q 048438 3 LIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGVE--G--AD--SFSLNA 70 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~--~--~D--s~~~~~ 70 (239)
..+-+|+++.-+|.||.+.+ +++|+++|++|++++++|.+|+.....-+.+.. .....+ . .| .++.++
T Consensus 198 ~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~ 277 (496)
T PLN02376 198 KKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSL 277 (496)
T ss_pred CCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEec
Confidence 34566777888999999888 566788899999999999999864322111111 111100 0 12 236799
Q ss_pred cccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHH-----HHHHHHHHHHHHH
Q 048438 71 HKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMEN-----LRHFLRSHVNMAR 144 (239)
Q Consensus 71 hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g-----~~~~~~~~~~la~ 144 (239)
+|.++.| .-+|+++..++......... ..+.. ...+...++...+.... +++..++..+..+
T Consensus 278 SK~~glpGlRvG~li~~~~~l~~~~~~~-------~~~~~-----vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~ 345 (496)
T PLN02376 278 SKDMGLPGFRVGIVYSFNDSVVSCARKM-------SSFGL-----VSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHK 345 (496)
T ss_pred cccCCCCcceEEEEEECCHHHHHHHHHH-------hhcCC-----CCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHH
Confidence 9998655 55788776433222211000 00000 11122222222222222 2223344455566
Q ss_pred HHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--C
Q 048438 145 LFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--G 221 (239)
Q Consensus 145 ~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~ 221 (239)
.+.+.|++. |++++.+....-+.+.++.... +... -+....+.+.|.++ |..+.+.... .
T Consensus 346 ~l~~~L~~~-gi~~~~~~aG~flwi~l~~~~~---------------~~~~-~~~e~~l~~~ll~~~gV~v~pGs~F~~~ 408 (496)
T PLN02376 346 VFTTGIKKA-DIACLTSNAGLFAWMDLRHLLR---------------DRNS-FESEIELWHIIIDKVKLNVSPGSSFRCT 408 (496)
T ss_pred HHHHHHHHC-CCcccCCCceEEEEEEchhhhc---------------cCCc-hhHHHHHHHHHHHcCCEEEeCccccCCC
Confidence 777888774 7776544333444455532100 0000 00112566666665 4444443433 2
Q ss_pred CEeEEEEEecCC
Q 048438 222 GIYAIRFATGAT 233 (239)
Q Consensus 222 g~~~lR~~~~~~ 233 (239)
+..++|+++.+.
T Consensus 409 ~~g~~Ri~fa~~ 420 (496)
T PLN02376 409 EPGWFRICFANM 420 (496)
T ss_pred CCCEEEEEeeCC
Confidence 357999998863
No 243
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=98.52 E-value=5.5e-06 Score=71.73 Aligned_cols=188 Identities=11% Similarity=0.020 Sum_probs=108.5
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g 81 (239)
+-+|+++.-+|.||.+.|.+++.++++. +++++++|.+++-... .+.........+. =.++.++.|.++.| .-+|
T Consensus 153 ~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~-~~~~~~~~~~~~~-vi~~~SfSK~~gl~GlRvG 230 (364)
T PRK04781 153 AKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSD-VPSAVGLLARYDN-LAVLRTLSKAHALAAARIG 230 (364)
T ss_pred CeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcC-CcchHHHHhhCCC-EEEEecChhhcccccceee
Confidence 4456667788999999999998888875 4899999999874321 1111011111111 15677999997644 3366
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--C-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--G-MENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
+++. .++++....... ..+. ..++....+...+ + .+...+.+++..+..+++.+.|++++++..
T Consensus 231 y~v~-~~~l~~~l~~~~------~~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 297 (364)
T PRK04781 231 SLIA-NAELIAVLRRCQ------APYP------VPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRR 297 (364)
T ss_pred eeeC-CHHHHHHHHhcc------CCCC------CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 6664 344443222100 0011 1112222222222 2 234455556666777889999988878754
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-CEeEEEEEecCC
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-GIYAIRFATGAT 233 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-g~~~lR~~~~~~ 233 (239)
+.++..+-+.++++.. ..+.+.|.++|..+....... ...++|+++..+
T Consensus 298 ~~p~~g~f~~~~~~~~--------------------------~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~~~ 347 (364)
T PRK04781 298 VYPSQGNFLLVRFDDA--------------------------EAAFQALLAAGVVVRDQRAAPRLSDALRITLGTP 347 (364)
T ss_pred ECCCCCcEEEEEcCCH--------------------------HHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCCCH
Confidence 4566667666666421 255667777777766544332 246899998754
No 244
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.51 E-value=3.1e-06 Score=74.01 Aligned_cols=200 Identities=13% Similarity=0.061 Sum_probs=113.8
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccccc--CCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI--DGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++.-+|.||++-+ +++|+++|++||+|++.|.+|......-..+.... .+....=+..-|+.|.++.+ .
T Consensus 164 tk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGw 243 (393)
T COG0436 164 TKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGW 243 (393)
T ss_pred ceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccccccccc
Confidence 458899999999999766 78889999999999999999875433221111111 11001223344899997644 3
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
=+|++...++.++..... .......+...+...+...+|+.-. .+.++...+...+..+.+.+.|.+++|++
T Consensus 244 RvG~~v~~~~~l~~~~~~-------~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~ 316 (393)
T COG0436 244 RIGWVVGPPEELIAALRK-------LKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLS 316 (393)
T ss_pred ceeEeecChHHHHHHHHH-------HHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCee
Confidence 367776643333322210 0000111111111122223333211 13444454667788899999999998899
Q ss_pred EEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE-EEEC---CEeEEEEEecC
Q 048438 158 VVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN-VVLG---GIYAIRFATGA 232 (239)
Q Consensus 158 ~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~---g~~~lR~~~~~ 232 (239)
+..+|+... +...++... -...+.++|.++..+.+.+ .... |...+|++...
T Consensus 317 ~~~~p~Ga~Y~~~~i~~~~-----------------------d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~ 373 (393)
T COG0436 317 VVKPPEGAFYLFPKIPELL-----------------------DSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLAT 373 (393)
T ss_pred eccCCCeeEEEEeecCCCC-----------------------CHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEec
Confidence 988665444 333333211 0125666776666555544 3332 56799999876
Q ss_pred CC
Q 048438 233 TL 234 (239)
Q Consensus 233 ~~ 234 (239)
..
T Consensus 374 ~~ 375 (393)
T COG0436 374 SE 375 (393)
T ss_pred CH
Confidence 54
No 245
>PRK09265 aminotransferase AlaT; Validated
Probab=98.51 E-value=1.3e-05 Score=70.41 Aligned_cols=197 Identities=10% Similarity=-0.004 Sum_probs=101.0
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCC-CCcceE-EEcCcccCCCcc-
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV-EGADSF-SLNAHKWFFATL- 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~-~~~Ds~-~~~~hK~l~~P~- 78 (239)
+-+|+++..+|.||.+.| +++|+++|+++|+++++|.+++........... +..+ .....+ ..++.|.++.|.
T Consensus 169 ~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~~~pGl 247 (404)
T PRK09265 169 TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHIS-IASLAPDLLCVTFNGLSKAYRVAGF 247 (404)
T ss_pred ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCC-HHHcCCCceEEEEecchhhccCccc
Confidence 456777788999999998 899999999999999999998643221111111 1111 112344 457799986552
Q ss_pred cceEEEeeCcc-----cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHH---HHHHHHHHHHHHHH
Q 048438 79 DCCCLWATNPE-----YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHF---LRSHVNMARLFERL 149 (239)
Q Consensus 79 g~g~l~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~---~~~~~~la~~l~~~ 149 (239)
-+|+++...+. ++..... .....+. ...+...++...++. +.+.+. .++..+..+++.+.
T Consensus 248 RiG~~v~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~ 316 (404)
T PRK09265 248 RVGWMVLSGPKKHAKGYIEGLDM-----LASMRLC------ANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWEL 316 (404)
T ss_pred ceEEEEEeCchHHHHHHHHHHHH-----HhccccC------CCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 25777653222 1111100 0000000 111112222222221 112222 23445567778888
Q ss_pred HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE--CCEeEEE
Q 048438 150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL--GGIYAIR 227 (239)
Q Consensus 150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~--~g~~~lR 227 (239)
|++.+++++..+.....+.+++++.... .. .-...+.+.+.+.|..+...... .+..++|
T Consensus 317 L~~~~~~~~~~p~~g~~l~~~~~~~~~~-------------~~-----~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~R 378 (404)
T PRK09265 317 LNAIPGVSCVKPKGALYAFPKLDPKVYP-------------IH-----DDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFR 378 (404)
T ss_pred HhcCCCCcccCCCcceEEEEEecccccC-------------CC-----CHHHHHHHHHHhCCEEEECchhhCCCCCCeEE
Confidence 8887787765443444555566542100 00 00113444555666655544433 2356899
Q ss_pred EEec
Q 048438 228 FATG 231 (239)
Q Consensus 228 ~~~~ 231 (239)
+++.
T Consensus 379 i~~~ 382 (404)
T PRK09265 379 IVTL 382 (404)
T ss_pred EEeC
Confidence 9985
No 246
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=98.51 E-value=4.1e-06 Score=72.89 Aligned_cols=135 Identities=10% Similarity=0.116 Sum_probs=72.2
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc--ccCCC-cccceEEEeeCccc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH--KWFFA-TLDCCCLWATNPEY 90 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h--K~l~~-P~g~g~l~~~~~~~ 90 (239)
++.+|...|+++|.++|++||+++++|+||+.+.. .+..+ ...+ .|+-++|+| |.+.. +. .|++++.++++
T Consensus 126 ~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~-~~~~~--~g~~--~~~~~fSf~~~K~l~~g~~-gG~v~~~~~~~ 199 (376)
T TIGR02379 126 VHYAGVACDMDTIMALANKHQLFVIEDAAQGVMST-YKGRA--LGSI--GHLGTFSFHETKNYTSGGE-GGALLINDQAF 199 (376)
T ss_pred eCCCCCccCHHHHHHHHHHCCCEEEEECccccCCc-cCCcc--cCCC--CCEEEEeCCCCCcCcccCC-ceEEEECCHHH
Confidence 34689999999999999999999999999998753 21100 1111 355555554 54432 23 46666655543
Q ss_pred cccccc--CCC----Ccc--CCCCce-ecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 91 LKNKAT--ESK----PVV--DYKDWQ-ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 91 l~~~~~--~~~----~~~--~~~~~~-~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
...... ..+ ... ....+. ...+.+++.-.+-+++-.-..+.+.++.++..+++++..+.|+.++
T Consensus 200 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~ 272 (376)
T TIGR02379 200 IERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADRINQDRLATWQLYQDALKPLE 272 (376)
T ss_pred HHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCC
Confidence 322211 000 000 000011 1123332221111221111234566777777788888888887654
No 247
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=98.49 E-value=1.1e-05 Score=71.37 Aligned_cols=192 Identities=12% Similarity=0.026 Sum_probs=100.2
Q ss_pred cEEEEEecCCCCccccc----ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-ccc
Q 048438 5 PLFLCATIGTTAITAVD----PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-TLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~----pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g 79 (239)
..+|++--...+.|.+- .+++|.++|++||+++++|.+|++.--....+.....++. .|.++++ |.++. -..
T Consensus 199 ~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~-PDi~t~~--K~l~~~G~p 275 (425)
T PRK09264 199 PAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGIT-PDIVTLS--KSISGYGLP 275 (425)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCC-CCEEEec--cccCCCccc
Confidence 45666665666667643 5999999999999999999999753111110000023443 8988774 98764 233
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHhCC----C
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI-RNYGMENLRHFLRSHVNMARLFERLVSGD----K 154 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~ 154 (239)
+|++++++ ++ ...... ....++ .+.+...+....++ ..+..+ +..++..++.+++.+.|+++ +
T Consensus 276 igav~~~~-~i-~~~~~~------~~~~T~-~gnp~~~aaa~a~l~~~~~~~---~l~~~~~~~g~~l~~~l~~l~~~~~ 343 (425)
T PRK09264 276 MALVLIKP-EL-DVWKPG------EHNGTF-RGNNLAFVTATAALEEYWSDD---AFEKEVKAKGELVRERLEEIAAKYP 343 (425)
T ss_pred eEEEEEch-hh-hccCCC------ccCCCC-CCCHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 57777753 32 211100 000011 11111222222344 222222 34455557777777776542 2
Q ss_pred CeEEEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 155 RFEVVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 155 g~~~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
.+ +.... ...++.+.+.+ ......+.+.+.++|.++... .. +...||+++...
T Consensus 344 ~~-~~~vrg~Gl~~~i~l~~-----------------------~~~~~~l~~~~~~~Gv~~~~~-~~-~~~~lr~~p~l~ 397 (425)
T PRK09264 344 GL-GAEVRGRGMMQGIDFGD-----------------------GELAGKIAAEAFENGLIIETS-GP-EDEVVKLLPPLT 397 (425)
T ss_pred Cc-eecceecccEEEEEecC-----------------------hHHHHHHHHHHHHCCCEEecc-CC-CCCEEEEeCCCC
Confidence 22 11111 22345555543 233446777888888765431 11 236889987665
Q ss_pred CCCc
Q 048438 234 LTEE 237 (239)
Q Consensus 234 ~t~~ 237 (239)
.|++
T Consensus 398 ~t~~ 401 (425)
T PRK09264 398 IDEE 401 (425)
T ss_pred CCHH
Confidence 6544
No 248
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=98.48 E-value=2.2e-06 Score=72.14 Aligned_cols=188 Identities=15% Similarity=0.126 Sum_probs=118.3
Q ss_pred EEEEecCCCCcccccC-hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEe
Q 048438 7 FLCATIGTTAITAVDP-LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWA 85 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~p-l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~ 85 (239)
.|..+...|.+|+--| .+.+.. +..+++|++-++...++| +. +.|.|.++.+|.+ +|.|.+++++
T Consensus 147 yv~~~~NeTi~Gv~v~~~p~~~~-----~~~~v~D~SS~ilsr~iD-----vs---k~dviyagaQKnl-GpaGltvvIv 212 (365)
T COG1932 147 YVHFCWNETISGVEVPELPDIGS-----DGLLVADASSAILSRPID-----VS---KYDVIYAGAQKNL-GPAGLTVVIV 212 (365)
T ss_pred EEEEecCCcccceEccCCCCCCC-----CceEEEecccHHhcCCCC-----hh---HcceEEEehhhcc-CccceEEEEE
Confidence 4888889999999443 444432 278999999888877776 33 4999999999996 5889998888
Q ss_pred eCcccccccccC-CCCccCCCCceecCCCC--CChHHHHH---HHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 86 TNPEYLKNKATE-SKPVVDYKDWQITLSRS--FRSLKLWF---VIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 86 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~---~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
+ ++.+.+.... .+..+++.......++- ...+.++. .++.+ ...|++...++..+-++.|++.+.+. +|-.
T Consensus 213 r-~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s-~fy~ 290 (365)
T COG1932 213 R-PDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKS-DFYR 290 (365)
T ss_pred c-HHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC-Cccc
Confidence 5 4555555322 12222221111111111 11233322 23333 22377777778889999999999886 4421
Q ss_pred --EcC-CC-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 159 --VFP-CH-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 159 --~~~-~~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
+.+ .+ .-.|||.+.+ .++...+.+.+.++|..........|. +|+++.|-.
T Consensus 291 ~~v~~~~RS~mnV~f~~~~-----------------------~~ld~~fv~eae~~gl~~lkGhr~vgG--mRasiynA~ 345 (365)
T COG1932 291 NLVAKANRSRMNVTFTLVD-----------------------AELDKGFVAEAEAAGLIYLKGHRSVGG--LRASIYNAV 345 (365)
T ss_pred cccchhhccceeEEEEcCc-----------------------HHHHHHHHHHHHHcCCceeccccCCCc--eeeeeecCC
Confidence 111 22 3358899875 467778888888888877765333233 899987754
Q ss_pred C
Q 048438 235 T 235 (239)
Q Consensus 235 t 235 (239)
.
T Consensus 346 ~ 346 (365)
T COG1932 346 P 346 (365)
T ss_pred C
Confidence 3
No 249
>PRK06541 hypothetical protein; Provisional
Probab=98.48 E-value=7.6e-06 Score=73.02 Aligned_cols=212 Identities=8% Similarity=-0.014 Sum_probs=108.8
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
.+.+|++.-...+.|.+.| +++|.++|++||+.+++|.+|.+.--....+.....++. .|.++ +-|.+++-+
T Consensus 221 ~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~-PDivt--~gK~l~~G~~ 297 (460)
T PRK06541 221 TVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYV-PDIIT--CAKGITSGYS 297 (460)
T ss_pred CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCC-CCEEE--ecccccCCcc
Confidence 4556666666777899988 999999999999999999999432121221111123443 88876 689887522
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
..|.++.++ +......... ..+ ....++ .+.+..+......++.+..+ +..++..++.++|.+.|+++....+
T Consensus 298 pigav~~~~-~i~~~~~~~~-~~~-~~~~T~-~gnp~~~aaala~l~~l~~~---~~~~~~~~~g~~l~~~L~~l~~~~~ 370 (460)
T PRK06541 298 PLGAMIASD-RLFEPFLDGP-TMF-LHGYTF-GGHPVSAAVALANLDIFERE---GLLDHVRDNEPAFRATLEKLLDLPI 370 (460)
T ss_pred ceeEEEEcH-HHHHHhhcCC-Ccc-ccCCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 356666643 3322211100 000 000111 11122222233344444333 3445666888899998877532222
Q ss_pred EcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHH-HHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 159 VFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQIN-EFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 159 ~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
+.. ....+..+.+..... ...+-+.+..+ .....+.+.|.++|.+... ...|..++|+++....|
T Consensus 371 v~~vrg~Gl~~~ie~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~--~~~g~~~lrl~Ppl~~t 438 (460)
T PRK06541 371 VGDVRGDGYFYGIELVKDKA----------TKETFTDDESERLLRGFLSPALFEAGLYCRA--DDRGDPVVQLAPPLISG 438 (460)
T ss_pred eEEEEecceEEEEEEecCcc----------cccCCcchhhhhhHHHHHHHHHHhCCeEEEe--cCCCCCEEEEECCCCCC
Confidence 211 223345555532110 00000001111 1223667788877765432 12355789999776665
Q ss_pred Cc
Q 048438 236 EE 237 (239)
Q Consensus 236 ~~ 237 (239)
++
T Consensus 439 ~~ 440 (460)
T PRK06541 439 QE 440 (460)
T ss_pred HH
Confidence 54
No 250
>PTZ00377 alanine aminotransferase; Provisional
Probab=98.48 E-value=1.3e-05 Score=72.03 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=35.9
Q ss_pred ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEeccccc
Q 048438 4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAG 45 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~ 45 (239)
.+-+|+++.-+|.||.+.+ +++|+++|++||+++++|.+|.-
T Consensus 218 ~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~ 262 (481)
T PTZ00377 218 TPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQE 262 (481)
T ss_pred CeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHh
Confidence 4556666677899999988 88899999999999999999864
No 251
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=98.47 E-value=3e-06 Score=73.07 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=107.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--ceE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD--CCC 82 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g--~g~ 82 (239)
+-+|+++.-+|.||.+.|.+++.++++..++++++|.++..... ..+...+...+ --.++.+++|+ + ..| +|+
T Consensus 154 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~-~vi~~~S~SK~-~-~~GlRiG~ 228 (356)
T PRK04870 154 PALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAG--DSWLPRLARFP-NLLVMRTVSKL-G-LAGLRLGY 228 (356)
T ss_pred CCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcC--cchHHHHhhCC-CEEEEecchhh-h-hHHHhhhh
Confidence 44566677789999999999999998877999999999864221 11111122222 23678899994 3 334 676
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC 162 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~ 162 (239)
++. .++++....... ..+. .+ .+.......+++. .+.+++..++..+..+++.+.|++.+|+.+ .++
T Consensus 229 ~i~-~~~~i~~~~~~~------~~~~--~~-~~~q~~a~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~ 295 (356)
T PRK04870 229 LAG-HPAWIAELDKVR------PPYN--VN-VLTQATALFALEH--VDVLDAQAAQLRAERTRLAAALAALPGVTV-FPS 295 (356)
T ss_pred hhC-CHHHHHHHHHcc------CCCc--CC-HHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCC
Confidence 664 334433321100 0011 00 0111111122221 234566777777888899999988888875 456
Q ss_pred CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEEEEecCC
Q 048438 163 HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIRFATGAT 233 (239)
Q Consensus 163 ~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR~~~~~~ 233 (239)
..+.+.+++++. ..+.+.|.++|.......... +..++|+++..+
T Consensus 296 ~~~~~~~~~~~~--------------------------~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~~~ 342 (356)
T PRK04870 296 AANFILVRVPDA--------------------------AAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVGTP 342 (356)
T ss_pred CCeEEEEECCCH--------------------------HHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCCCH
Confidence 667777766420 145566666776655433332 356899998753
No 252
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=98.46 E-value=2.1e-05 Score=69.81 Aligned_cols=199 Identities=11% Similarity=0.014 Sum_probs=108.8
Q ss_pred CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-
Q 048438 3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT- 77 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P- 77 (239)
....+|++--...+-|.+.| +++|.++|++||+.+++|.+|.+.--...-+.....++. .|.++ .-|.+++-
T Consensus 223 ~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~-PDivt--~gK~lg~G~ 299 (442)
T TIGR03372 223 DDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQ-PDILC--LAKALGGGV 299 (442)
T ss_pred CcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCC-CCeee--ehhhhcCCc
Confidence 34566777666677888888 999999999999999999999642111111111123443 89877 57998753
Q ss_pred ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-Ce
Q 048438 78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RF 156 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~ 156 (239)
..+|.++.++ +........ . . ...+-.++.+.......++|+.+..++ ..++..++.+++.+.|+++. .+
T Consensus 300 ~Pigavv~~~-~i~~~~~~~-~--~--~~~~T~~gnp~~~Aaa~a~L~~i~~~~---l~~~~~~~G~~l~~~L~~l~~~~ 370 (442)
T TIGR03372 300 MPIGATIATE-AVFSVLFDN-P--F--LHTTTFGGNPLACAAALATINELLEKN---LPAQAAIKGDFLLDGFQQLAAEY 370 (442)
T ss_pred ccceEEEecH-HHHHhhhcc-C--c--cccCCCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhC
Confidence 2356666643 332222100 0 0 000111122223333334455554443 34445577777777776531 11
Q ss_pred E-EEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 157 E-VVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 157 ~-~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
. .+.+ ....++.+.+... +....+.+.|.++|.+.. ... .+...+|+.+...
T Consensus 371 ~~~i~~vRG~Gl~~giel~~~-----------------------~~~~~i~~~l~~~Gvl~~-~~~-~~~~~lr~~Ppl~ 425 (442)
T TIGR03372 371 PDLIIEARGKGLLMAIEFRDN-----------------------EIGYAFAKELFQQNILVA-GTL-NNAKSIRIEPPLT 425 (442)
T ss_pred CCceEEEecceEEEEEEeCCh-----------------------HHHHHHHHHHHHCCcEEe-ecC-CCCCEEEEECCcc
Confidence 1 1111 2234566666431 233467788888876543 221 1346899998777
Q ss_pred CCCcC
Q 048438 234 LTEER 238 (239)
Q Consensus 234 ~t~~~ 238 (239)
.|++|
T Consensus 426 ~t~~~ 430 (442)
T TIGR03372 426 ITIEQ 430 (442)
T ss_pred cCHHH
Confidence 76653
No 253
>PRK13578 ornithine decarboxylase; Provisional
Probab=98.46 E-value=5.7e-07 Score=83.08 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=93.2
Q ss_pred CccEEEEEecCCCCcccccChhHHHHH-HHHhCCEEEEecccccccccCccccccc--CCCCCcc----eEEEcCcccCC
Q 048438 3 LIPLFLCATIGTTAITAVDPLKPLCDV-AKQFGIWVHVDAAYAGSACIFPEFRHFI--DGVEGAD----SFSLNAHKWFF 75 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i-~~~~gi~lhvD~A~~~~~~~~~~~~~~~--~~~~~~D----s~~~~~hK~l~ 75 (239)
++|+-.++....|..|.+-++++|+++ +|.++ .+|||.||++..-+.+.++.+- ..-.++| +++-|.||.|.
T Consensus 280 ~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~ 358 (720)
T PRK13578 280 ARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQA 358 (720)
T ss_pred ccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcch
Confidence 366655566667889999999999999 68888 9999999998766555432210 0012589 99999999999
Q ss_pred CcccceEEEeeCcccccccccCCCCccCCC----CceecCCCCCChHHHHHHHH----HhCHHHHHHHHHHHHHHHHHHH
Q 048438 76 ATLDCCCLWATNPEYLKNKATESKPVVDYK----DWQITLSRSFRSLKLWFVIR----NYGMENLRHFLRSHVNMARLFE 147 (239)
Q Consensus 76 ~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~----~~g~~g~~~~~~~~~~la~~l~ 147 (239)
+-..++.+.+++. .+.... .+++.. .+..-.++. .+..+.+++. .+..+.-++.++...+++..++
T Consensus 359 alTQaS~LHvk~~-~i~g~~----~~v~~~r~~~al~m~qSTS-PsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R 432 (720)
T PRK13578 359 GFSQTSQIHKKDN-HIKGQA----RYCPHKRLNNAFMLHASTS-PFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEAR 432 (720)
T ss_pred hhhhHhhhhcCCc-cccccc----ccCCHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 9999999888653 221100 000000 011111111 1233333332 1211112455666778888888
Q ss_pred HHH-hCCCCeEEEcC
Q 048438 148 RLV-SGDKRFEVVFP 161 (239)
Q Consensus 148 ~~l-~~~~g~~~~~~ 161 (239)
+.| +.+++|+++.+
T Consensus 433 ~~l~~~~~~~~~~~p 447 (720)
T PRK13578 433 KLILARCKLIRPFIP 447 (720)
T ss_pred HHHHHhCCCeeeccc
Confidence 888 77788888753
No 254
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.45 E-value=9.2e-07 Score=76.54 Aligned_cols=141 Identities=14% Similarity=0.089 Sum_probs=76.4
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcC--cccCCCcccceEEEeeCcccc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNA--HKWFFATLDCCCLWATNPEYL 91 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~--hK~l~~P~g~g~l~~~~~~~l 91 (239)
+...|...|+++|.++|+++|++++-|+||+.|...-.. .-|- .-|+-++|+ .|.+.+.. .|+++++++++.
T Consensus 120 ~h~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~----~~G~-~gd~~~fSf~~~K~i~~ge-GG~v~~~~~~~~ 193 (363)
T PF01041_consen 120 VHLFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGR----PVGS-FGDIAIFSFHPTKIITTGE-GGAVVTNDPELA 193 (363)
T ss_dssp E-GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTE----ETTS-SSSEEEEESSTTSSS-SSS--EEEEESTHHHH
T ss_pred ecCCCCcccHHHHHHHHHHcCCcEEEccccccCceeCCE----eccC-CCCceEecCCCCCCCcCCC-CeeEEecHHHHH
Confidence 457888889999999999999999999999988643211 1121 246666665 48874443 467777665432
Q ss_pred ccccc--CCCCcc-CCCCceec--CCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 92 KNKAT--ESKPVV-DYKDWQIT--LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 92 ~~~~~--~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
..... ..+... ....+... .+-.++--.+-+++.....+.+.+++++..++++++.+.|+.++++....
T Consensus 194 ~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~ 267 (363)
T PF01041_consen 194 ERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAGIPGIKPPP 267 (363)
T ss_dssp HHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEG
T ss_pred HHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCccccc
Confidence 22210 000000 00111111 22222222222222222235677888888899999999999999987765
No 255
>PLN02656 tyrosine transaminase
Probab=98.44 E-value=9.3e-06 Score=71.43 Aligned_cols=201 Identities=10% Similarity=0.051 Sum_probs=105.0
Q ss_pred cEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+.+|+.+..+|.||.+ +++++|+++|+++|+++++|.+++.....-...... +.... -=++..|+.|.++.| .
T Consensus 170 ~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~-~vi~~~SfSK~f~~pGl 248 (409)
T PLN02656 170 TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIV-PVLTLGSLSKRWIVPGW 248 (409)
T ss_pred ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccC-cEEEEcccchhccCcce
Confidence 4566777789999998 568899999999999999999987433211111110 11101 124567899985555 4
Q ss_pred cceEEEeeCc-------ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438 79 DCCCLWATNP-------EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS 151 (239)
Q Consensus 79 g~g~l~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~ 151 (239)
-+|+++..++ .++...... .+ ...+........+..+++....+-+++..++..+..+++.+.|+
T Consensus 249 RiG~~i~~~~~~~~~~~~~~~~~~~~----~~----~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~ 320 (409)
T PLN02656 249 RLGWFVTTDPSGSFRDPKIVERIKKY----FD----ILGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIK 320 (409)
T ss_pred eEEEEEEeCcccccccHHHHHHHHHH----Hh----hhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777776321 222211100 00 00000011112222223321223455666666677788888998
Q ss_pred CCCCeEEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHH-HHHHHhcCcEEEEEEEECCEeEEEEE
Q 048438 152 GDKRFEVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNREL-LESINASGKAYMTNVVLGGIYAIRFA 229 (239)
Q Consensus 152 ~~~g~~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~g~~~~~~~~~~g~~~lR~~ 229 (239)
+++++....+|+.++ +.++++..... ... + ...+ .+.+.+.|..+.+........++|++
T Consensus 321 ~~~~~~~~~~p~gg~~~w~~l~~~~~~-------------~~~---~--~~~~~~~~l~~~gV~v~pg~~fg~~~~iRi~ 382 (409)
T PLN02656 321 EIPCITCPHKPEGSMAVMVKLNLSLLE-------------DIS---D--DIDFCFKLAREESVIILPGTAVGLKNWLRIT 382 (409)
T ss_pred hCCCCcCCcCCCeEEEEEEecchhhcC-------------CCC---C--HHHHHHHHHHhCCEEEecchhcCCCCeEEEE
Confidence 875544333454443 44454311000 000 0 0122 33445566666655555456799999
Q ss_pred ecC
Q 048438 230 TGA 232 (239)
Q Consensus 230 ~~~ 232 (239)
+..
T Consensus 383 ~~~ 385 (409)
T PLN02656 383 FAA 385 (409)
T ss_pred eCC
Confidence 885
No 256
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=98.44 E-value=1.1e-05 Score=71.75 Aligned_cols=203 Identities=14% Similarity=0.140 Sum_probs=104.0
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
.+.+|++--...+.|.+.| +++|.++|++||+++++|.+|.+.--...-+.....++. .|.+++ -|.+++- .
T Consensus 218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~-PDi~~~--gK~l~gG~~ 294 (445)
T PRK09221 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVT-PDIITF--AKGLTNGAI 294 (445)
T ss_pred cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCC-CCEEEe--ccccccCcc
Confidence 3556777777778899999 999999999999999999998642111111000022443 787655 5776431 1
Q ss_pred cceEEEeeCcccccccccCCCCccCC-CCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDY-KDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
..|.++.++ +..............+ ...++. +.+.......++|+.+..+ +..++..++.++|++.|+++.+..
T Consensus 295 Pi~av~~~~-~i~~~~~~~~~~~~~~~~~~T~~-~~pl~~aaa~a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~~~~ 369 (445)
T PRK09221 295 PMGAVIASD-EIYDAFMQGPEYAIEFFHGYTYS-AHPVACAAGLATLDIYREE---DLFERAAELAPYFEDAVHSLKGLP 369 (445)
T ss_pred cceeeEEcH-HHHHhhccCcccccccccccCCC-cCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhccCC
Confidence 245555543 3322111100000000 111211 2222222223445555333 345667799999999988763332
Q ss_pred EEcCC-Cee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 158 VVFPC-HFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 158 ~~~~~-~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
.+.+. ..+ +..+.+.+... .+ .....++.+++.++|.+... +...+|+++.-..|
T Consensus 370 ~v~~vrg~Gl~~~v~~~~~~~--------------~~----~~~~~~~~~~~~~~Gv~~~~-----~~~~lr~~Ppl~~t 426 (445)
T PRK09221 370 HVIDIRNIGLVAGIELAPRPG--------------AP----GARGYEAFMKCFEKGLLVRY-----TGDTIALSPPLIIE 426 (445)
T ss_pred CEEEEecCceEEEEEEecccc--------------cc----cchHHHHHHHHHHCCeEEee-----cCCEEEEECCccCC
Confidence 22221 112 23344432110 00 11223566777778855432 23579999766555
Q ss_pred Cc
Q 048438 236 EE 237 (239)
Q Consensus 236 ~~ 237 (239)
++
T Consensus 427 ~~ 428 (445)
T PRK09221 427 KA 428 (445)
T ss_pred HH
Confidence 54
No 257
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=98.44 E-value=1.7e-06 Score=74.29 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=93.3
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-CcceEEEcCcccCCCccc--ce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GADSFSLNAHKWFFATLD--CC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~Ds~~~~~hK~l~~P~g--~g 81 (239)
..+|-.-.-+|.+..+-||++|+++||++|+.++||.+.+.+.. .+ .+. +||.++-|+.|++++... .|
T Consensus 163 t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~-~~-------pL~lGADIV~hSaTKyi~Ghsdvi~G 234 (409)
T KOG0053|consen 163 TKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN-QD-------PLPLGADIVVHSATKYIGGHSDVIGG 234 (409)
T ss_pred ceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc-cC-------hhhcCCCEEEEeeeeeecCCcceeee
Confidence 45677778899999999999999999999999999999987733 22 122 499999999999988644 45
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
++..+.+++..+... .....+.-..++.+|..+| |.+.+.-|++++.+.+..+.+.|.+.|.++
T Consensus 235 ~iv~n~~~~~~~l~~----------~~~~lg~~~~p~~~~ll~R--glktl~lRi~~~~ena~~~A~~Le~~~~v~ 298 (409)
T KOG0053|consen 235 SVVLNSEELASRLKF----------LQEDLGWCEDPFDLFLLSR--GLKTLHLRINKHSENALKIALLLEAHPKVK 298 (409)
T ss_pred EEecCcHHHHHHHHH----------HHHHhcCCCCHHHHHHHhc--CcchhhhhHHHHHHHHHHHHHHhhhCCcee
Confidence 555543444333211 0111222334566666555 445556677888888888888888877777
No 258
>PRK08068 transaminase; Reviewed
Probab=98.44 E-value=1.6e-05 Score=69.48 Aligned_cols=193 Identities=11% Similarity=-0.022 Sum_probs=103.7
Q ss_pred cEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccC--CCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+.+.-+|.||.+.+. ++|.++|++|++++++|.+++-....-........ +...-..++.++.|.++.| .
T Consensus 168 ~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~Gl 247 (389)
T PRK08068 168 AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGW 247 (389)
T ss_pred ceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccc
Confidence 4456666678999998886 57777899999999999998642211000001111 1111346778999997544 2
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
-+|+++. +++.+....... ..+. .+.. ........++.. +.+-+++..++..+..+++.+.|++. |+.
T Consensus 248 RiG~~~~-~~~l~~~l~~~~------~~~~--~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~ 316 (389)
T PRK08068 248 RVAFAVG-NESVIEAINLLQ------DHLF--VSLFGAIQDAAIEALLS-DQSCVAELVARYESRRNAFISACREI-GWE 316 (389)
T ss_pred eeEeEec-CHHHHHHHHHHH------hhcc--CCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 2666664 343333221100 0000 0100 001111112211 23445566666777788888899886 776
Q ss_pred EEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEEecC
Q 048438 158 VVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFATGA 232 (239)
Q Consensus 158 ~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~~~ 232 (239)
+. ++..+. +.+.+++.. + ...+.+.|.++ |..+...... .+..++|+++..
T Consensus 317 ~~-~~~g~~~~~v~~~~~~----------------~-------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~~ 371 (389)
T PRK08068 317 VD-APKGSFFAWMPVPKGY----------------T-------SEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLLT 371 (389)
T ss_pred cc-CCCeeEEEEEECCCCC----------------C-------HHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEcC
Confidence 54 455544 556665421 0 12566677654 5554443322 235689999864
No 259
>PRK12414 putative aminotransferase; Provisional
Probab=98.43 E-value=8.5e-06 Score=71.03 Aligned_cols=194 Identities=12% Similarity=0.103 Sum_probs=102.2
Q ss_pred cEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++..+|.||.+ +++++|+++|++||+++++|.+|.-....-...... ...+..--+++.+++|.++.| .
T Consensus 163 ~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGl 242 (384)
T PRK12414 163 TRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGW 242 (384)
T ss_pred cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccc
Confidence 4566777888999997 568889999999999999999987432211111010 111111236788999987544 2
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
-+|+++.. ++.+...... ....... ...+...++...+.. ..+.+..+...+..+++.+.|++. |++
T Consensus 243 RiG~~v~~-~~l~~~l~~~-------~~~~~~~---~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~ 310 (384)
T PRK12414 243 RVGYCLAP-AELMDEIRKV-------HQFMVFS---ADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS-RFE 310 (384)
T ss_pred eEEEEecC-HHHHHHHHHH-------HhheecC---CCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC-CCe
Confidence 35766653 3333222100 0000000 011222222222211 122334445567778888888886 777
Q ss_pred EEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHHH-HHHHhcCcEEEEEEEE--CC--EeEEEEEec
Q 048438 158 VVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELL-ESINASGKAYMTNVVL--GG--IYAIRFATG 231 (239)
Q Consensus 158 ~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~g~~~~~~~~~--~g--~~~lR~~~~ 231 (239)
+. ++..+...+ ++++... . ....+. +.|.+.|..++..... .+ ..++|+++.
T Consensus 311 ~~-~~~gg~~~~~~~~~~~~--------------~-------~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~ 368 (384)
T PRK12414 311 LL-PSEGSFFMLARFRHFSD--------------E-------SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS 368 (384)
T ss_pred ec-CCCcceEEEEcccccCC--------------C-------CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec
Confidence 54 555555444 4443100 0 011233 3445566666554433 22 468999988
Q ss_pred C
Q 048438 232 A 232 (239)
Q Consensus 232 ~ 232 (239)
.
T Consensus 369 ~ 369 (384)
T PRK12414 369 K 369 (384)
T ss_pred C
Confidence 5
No 260
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=98.42 E-value=1.7e-05 Score=70.31 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=106.3
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|++--...+.|.+-| +++|.++|++||+++++|.+|++.......+.....++. .|. .++.|.+++-..
T Consensus 207 ~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~-pDi--~t~sK~lg~G~p 283 (433)
T PRK08117 207 EVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVV-PDI--MTIAKGIASGLP 283 (433)
T ss_pred cEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCC-CCE--eehhhhccCCCc
Confidence 3556666666677889888 999999999999999999999852111110000012332 675 467899875344
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~ 158 (239)
.|++..+ +++....... ....++ .+.+.......++++.+..+ +..++..++.+++++.|.++. ...+
T Consensus 284 igav~~~-~~i~~~~~~~------~~~~T~-~~np~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~ 352 (433)
T PRK08117 284 LSAVVAS-KELMEQWPLG------SHGTTF-GGNPVACAAALATLEVIKEE---KLLDNANEMGAYALERLEVLKEKHPV 352 (433)
T ss_pred ceeEEEc-HHHHhhccCC------CCCCCC-CcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 6766654 3333222110 000111 12222223333445544333 344555677788888776541 1111
Q ss_pred EcC-CCe-eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 159 VFP-CHF-AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 159 ~~~-~~~-~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
+.. +.. -++.+.+.++.. .+. ......+.+.+.++|.++... . .+..++|+++....|+
T Consensus 353 ~~~vrg~Gl~~gi~~~~~~~--------------~~~---~~~~~~~~~~l~~~Gv~~~~~-g-~~~~~lRl~p~~~~t~ 413 (433)
T PRK08117 353 IGDVRGIGLMIGIEIVDPDG--------------EPD---GDAVEKILDKCLEKGLLFYLC-G-NAGNVLRMIPPLTVTK 413 (433)
T ss_pred eeeeecCCcEEEEEEecCCC--------------Ccc---hHHHHHHHHHHHHCCCEEeec-C-CCCCEEEEeCCccCCH
Confidence 111 112 234444433210 000 123346677788888765432 1 1246899997666655
Q ss_pred c
Q 048438 237 E 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 414 ~ 414 (433)
T PRK08117 414 E 414 (433)
T ss_pred H
Confidence 4
No 261
>PRK08960 hypothetical protein; Provisional
Probab=98.41 E-value=8.1e-06 Score=71.19 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=99.6
Q ss_pred cEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc--
Q 048438 5 PLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-- 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-- 79 (239)
+.+++.+..+|.||.+.|. ++|+++|++||+++++|.+|...... +.... ...+..--.+..|++|.++ ..|
T Consensus 166 ~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~-~~~~~-~~~~~~~vi~~~S~SK~~g-~~GlR 242 (387)
T PRK08960 166 TVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYG-VDAAS-VLEVDDDAFVLNSFSKYFG-MTGWR 242 (387)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCC-hhhccCCEEEEeecccccC-CcccE
Confidence 3456677789999998875 56777789999999999998643221 11111 1122212256779999875 335
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
+|+++.. ++++...... .. .+....+ .+........+..-..+-+.+..+...+..+.+.+.|++. |+.+.
T Consensus 243 iG~~~~~-~~~~~~~~~~----~~--~~~~~~s-~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~ 313 (387)
T PRK08960 243 LGWLVAP-PAAVPELEKL----AQ--NLYISAS-TPAQHAALACFEPETLAILEARRAEFARRRDFLLPALREL-GFGIA 313 (387)
T ss_pred EEEEEcC-HHHHHHHHHH----Hh--hhccCCC-HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCC
Confidence 7777763 3443322110 00 0010001 1111111222221112233444445556677788888875 66543
Q ss_pred cCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEEC---CEeEEEEEecC
Q 048438 160 FPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLG---GIYAIRFATGA 232 (239)
Q Consensus 160 ~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~---g~~~lR~~~~~ 232 (239)
..+ ....+.++++.... + ...+.+.|.+ .|..+.+..... +..++|+++..
T Consensus 314 ~~p~g~~f~~~~~~~~~~--------------------~--~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~ 369 (387)
T PRK08960 314 VEPQGAFYLYADISAFGG--------------------D--AFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ 369 (387)
T ss_pred cCCCeeEEEEEeccccCC--------------------C--HHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC
Confidence 333 33344444432110 0 1245556554 455544333332 23589999885
No 262
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=98.40 E-value=3.2e-05 Score=68.73 Aligned_cols=202 Identities=15% Similarity=0.066 Sum_probs=106.5
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|++.-..+.+|.+.| +++|.++|++||+++++|.+|.+.......+.....++. .|.+++ .|.+++-..
T Consensus 204 ~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~-pDiitl--sK~l~~G~p 280 (443)
T PRK08360 204 GVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVE-PDIITL--GKPLGGGLP 280 (443)
T ss_pred CeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCC-CCEEEe--cccccCCce
Confidence 4566666666677888776 889999999999999999998753221111110112443 787765 899875344
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~ 158 (239)
.|++..+ ++........ . ...+. .+.+........+++.+..+ +..++..++.+++.+.|+++. ...+
T Consensus 281 igav~~~-~~i~~~~~~~-----~-~~~T~-~~~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~ 349 (443)
T PRK08360 281 ISATIGR-AEIMDSLPPL-----A-HAFTL-SGNPVASAAALAVIEEIEEK---NLLKRAEKLGNYTKKRLEEMKKKHEL 349 (443)
T ss_pred eEEEEEc-HHHHhhhcCC-----C-CCCCC-CcCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6776654 3333222110 0 00111 11122223333445544333 344556677778877776531 1222
Q ss_pred EcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 159 VFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 159 ~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
+.. ...-++.+.+..... . ... .......+.+++.++|.+... . +...+|+++....|+
T Consensus 350 v~~vrg~Gl~~gie~~~~~~------------~-~~~--~~~~~~~~~~~l~~~Gi~~~~---~-~~~~lr~~P~l~~t~ 410 (443)
T PRK08360 350 IGDVRGIGLMIGVDLVKDRE------------T-KER--AYEEAAKVVWRAWELGLIVTF---F-SGNVLRIQPPLTIEK 410 (443)
T ss_pred eeeeeccceEEEEEEecCCc------------c-cCc--cHHHHHHHHHHHHHCCeEEee---c-CCCEEEEeCCCCCCH
Confidence 222 123355555532110 0 000 012234677778888865432 1 346899987776665
Q ss_pred cC
Q 048438 237 ER 238 (239)
Q Consensus 237 ~~ 238 (239)
+|
T Consensus 411 ~~ 412 (443)
T PRK08360 411 EV 412 (443)
T ss_pred HH
Confidence 43
No 263
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=98.40 E-value=7.8e-06 Score=70.93 Aligned_cols=189 Identities=13% Similarity=0.065 Sum_probs=105.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCccccc---ccCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRH---FIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+.+..+|.||.+.|.+++.++++. .++++++|.+++-... -..... .+.....--++..++.|.++.| .
T Consensus 160 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~Gl 238 (371)
T PRK05166 160 PRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAA-GDDYPSALTLLKARGLPWIVLRTFSKAYGLAGL 238 (371)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcC-CcCcccHHHHHhhcCCCEEEEeechHhhhcchh
Confidence 4466778889999999998888777764 4899999999864431 111111 1111110125678999997644 3
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
-+|++++.++.......... ..+. ...+....++..+ ..+-+++..+...+..+++.+.|++. |+.
T Consensus 239 RiG~~i~~~~~l~~~~~~~~------~~~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~ 305 (371)
T PRK05166 239 RVGYGLVSDPELVGLLDRVR------TPFN------VNGAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM-GYR 305 (371)
T ss_pred heeeeecCCHHHHHHHHHhc------cCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-cCe
Confidence 36766654444332221100 0011 1112222222222 22345555666667778889999886 776
Q ss_pred EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
+ .++..+.+.++++.. ...+.+.|.++|..+..........++|+++..+
T Consensus 306 ~-~p~~g~fl~~~~~~~-------------------------~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~~~ 355 (371)
T PRK05166 306 I-APSRANFLFFDARRP-------------------------ASAVAEALLRQGVIVKPWKQPGFETFIRVSIGSP 355 (371)
T ss_pred e-CCCcCCEEEEeCCCC-------------------------HHHHHHHHHHCCeEEecCCCCCCCCeEEEEcCCH
Confidence 4 455555544443211 1256667777765544433223367899998754
No 264
>PRK09148 aminotransferase; Validated
Probab=98.39 E-value=1.5e-05 Score=69.95 Aligned_cols=196 Identities=13% Similarity=0.036 Sum_probs=103.7
Q ss_pred ccEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccc--cCCCCCcceEEEcCcccCCCc-
Q 048438 4 IPLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--IDGVEGADSFSLNAHKWFFAT- 77 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~~~~~~~Ds~~~~~hK~l~~P- 77 (239)
.+.+|+.+.-+|.||.+.+. ++|.++|++||+++++|.+|+.....-...... +.+.....+++.++.|.++.|
T Consensus 165 ~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pG 244 (405)
T PRK09148 165 KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAG 244 (405)
T ss_pred cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcc
Confidence 35677778778999999886 678888999999999999987532211000000 111112335678999997645
Q ss_pred ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
.-+|+++. +++.+...... .+...+. ...+....+...+ ..+-+++..+...+..+++.+.|++. +
T Consensus 245 lR~G~~v~-~~~~i~~l~~~----~~~~~~~------~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~ 312 (405)
T PRK09148 245 WRMGFAVG-NERLIAALTRV----KSYLDYG------AFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA-G 312 (405)
T ss_pred hheeeeeC-CHHHHHHHHHH----HHHhccC------CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 22677664 34443322110 0000001 0111111222222 22334455556667778888888875 7
Q ss_pred eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEEC--CEeEEEEEec
Q 048438 156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLG--GIYAIRFATG 231 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~ 231 (239)
+.+..+...+-+.+++++... .. + ...+.+.|. +.|.......... +..++|+++.
T Consensus 313 ~~~~~p~~g~f~~~~l~~~~~---------------~~---~--~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~ 371 (405)
T PRK09148 313 WDIPPPAASMFAWAPIPEAFR---------------HL---G--SLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV 371 (405)
T ss_pred CccCCCCeeEEEEEECCCccC---------------CC---C--HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec
Confidence 764433333345555543210 00 0 124555555 4555555443332 3468999975
No 265
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=98.39 E-value=1.8e-05 Score=68.71 Aligned_cols=189 Identities=11% Similarity=0.053 Sum_probs=105.4
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g 81 (239)
+-+|+.+...|.||.+.|.+++.++++.+ ++++++|.+++-.... ..... +.....--++..++.|.++.|. -+|
T Consensus 156 ~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~-~~~~~-~~~~~~~~i~~~SfSK~~g~~GlRiG 233 (369)
T PRK08153 156 APLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPA-GAAPP-IDTDDPNVIRMRTFSKAYGLAGARVG 233 (369)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCc-ccchh-hhhcCCCEEEEecchHhccCcchhee
Confidence 34566677889999999998888887654 8999999998643211 00100 1111112356779999987552 246
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
.++. .++.+....... ..+. ...+....+...+. .+-+++..+...+..+++.+.|++. |+.+.
T Consensus 234 ~~v~-~~~~~~~l~~~~------~~~~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~- 298 (369)
T PRK08153 234 YAIG-APGTIKAFDKVR------NHFG------MNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN-GLTPL- 298 (369)
T ss_pred eeec-CHHHHHHHHHhh------cCCC------CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-
Confidence 6654 333333221100 0011 11223333333332 2234445555667777788888875 77643
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
+...+.+.+.++.. ......+.++|.++|..+..+....+..++|+++..
T Consensus 299 p~~~~f~~~~~~~~----------------------~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~~ 348 (369)
T PRK08153 299 PSATNFVAIDCGRD----------------------GAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCGP 348 (369)
T ss_pred CCcCcEEEEECCCC----------------------cccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecCC
Confidence 55666666655321 123347777888787665333222345699999773
No 266
>PRK07337 aminotransferase; Validated
Probab=98.38 E-value=2e-05 Score=68.74 Aligned_cols=153 Identities=12% Similarity=0.039 Sum_probs=82.4
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceE-EEcCcccCCCcc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSF-SLNAHKWFFATL-D 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~-~~~~hK~l~~P~-g 79 (239)
+.+|+.+..+|.||.+.+ +++|+++|+++++++++|.++...... +.... ...+ ..+.+ +.+++|.++.|. -
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~~~~~-~~~~-~~~vi~~~S~SK~~~~~G~R 240 (388)
T PRK07337 164 TRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYD-AAPVS-ALSL-GDDVITINSFSKYFNMTGWR 240 (388)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccC-CCCcC-hhhc-cCCEEEEEechhhcCCchhh
Confidence 345666778999999776 688889999999999999998643221 11111 1112 13454 559999976442 2
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG---MENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
+|+++.. +..+....... ..+.. ....+...++...+. .+.+.+..++..+..+++.+.|++. ++
T Consensus 241 iG~~~~~-~~l~~~l~~~~------~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~ 308 (388)
T PRK07337 241 LGWLVVP-EALVGTFEKLA------QNLFI----CASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESL-GF 308 (388)
T ss_pred eeeeecC-HHHHHHHHHHH------HHhcc----CCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 7777763 23222211000 00000 011122222222221 2334455555667777888888885 66
Q ss_pred EEE-cCCCeeEEEEEEc
Q 048438 157 EVV-FPCHFAVVCFRVS 172 (239)
Q Consensus 157 ~~~-~~~~~~iv~f~~~ 172 (239)
.+. .|...+-+.++++
T Consensus 309 ~~~~~p~~g~f~~~~~~ 325 (388)
T PRK07337 309 KVPVMPDGAFYVYADCR 325 (388)
T ss_pred ccccCCCeeEEEEEecc
Confidence 543 3333445555654
No 267
>PRK06836 aspartate aminotransferase; Provisional
Probab=98.37 E-value=3e-05 Score=67.86 Aligned_cols=81 Identities=11% Similarity=-0.003 Sum_probs=53.4
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHH------hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQ------FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF 75 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~------~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~ 75 (239)
+-+|++++.+|.+|.+.| +++|+++|++ ||+++++|.++.................+ -..+..+++|.++
T Consensus 169 ~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~ 247 (394)
T PRK06836 169 TKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYD-NSIVVYSFSKSLS 247 (394)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccC-cEEEEecchhhcc
Confidence 446667788999999887 5667777888 89999999998643221101111111122 3577889999987
Q ss_pred Cc-ccceEEEee
Q 048438 76 AT-LDCCCLWAT 86 (239)
Q Consensus 76 ~P-~g~g~l~~~ 86 (239)
.| ..+|+++..
T Consensus 248 ~pGlRiG~~~~~ 259 (394)
T PRK06836 248 LPGERIGYIAVN 259 (394)
T ss_pred CcceeeEEEecC
Confidence 44 357777763
No 268
>PRK06107 aspartate aminotransferase; Provisional
Probab=98.37 E-value=2e-05 Score=69.12 Aligned_cols=205 Identities=11% Similarity=-0.006 Sum_probs=102.2
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHh-CCEEEEeccccccccc---CcccccccCCCCCcceEEEcCcccCCCc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQF-GIWVHVDAAYAGSACI---FPEFRHFIDGVEGADSFSLNAHKWFFAT 77 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~-gi~lhvD~A~~~~~~~---~~~~~~~~~~~~~~Ds~~~~~hK~l~~P 77 (239)
+-+|+++..+|.||.+.+ +++|+++|+++ ++++++|.+++-.... .+.......++..--.+..+++|.++.|
T Consensus 167 ~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p 246 (402)
T PRK06107 167 TRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMT 246 (402)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCc
Confidence 446667778899998876 56778888998 9999999998632211 1111111111111234566889997544
Q ss_pred c-cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 78 L-DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 78 ~-g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
. -+|+++. +++.+...... .+. .+.....+....+...+ +..-+++..+...+..+.+.+.|++++
T Consensus 247 GlRiG~~~~-~~~~~~~~~~~----~~~------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 315 (402)
T PRK06107 247 GWRIGYAAG-PADLIAAINKL----QSQ------SSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAIP 315 (402)
T ss_pred ccceeeeec-CHHHHHHHHHH----HHh------cccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 2576664 33333222110 000 00011112222222222 233345555566677788888998877
Q ss_pred CeEEEcCCCeeEEE-EEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEECCEeEEEEEecC
Q 048438 155 RFEVVFPCHFAVVC-FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 155 g~~~~~~~~~~iv~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
|+++. +++.+... ++++..... .. +.... ......+.+.+. +.|..+.+........++|+++..
T Consensus 316 g~~~~-~p~gg~~~~~~~~~~~~~------~~----~~~~~--~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRis~~~ 382 (402)
T PRK06107 316 GLSCL-VPDGAFYLYVNCAGLIGK------TT----PEGKV--LETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRLSIAT 382 (402)
T ss_pred CCccc-CCCcceEEeeeccccccc------cc----ccccC--CCCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEeCC
Confidence 77764 44445433 333210000 00 00000 000113444443 456666655444334689999886
Q ss_pred C
Q 048438 233 T 233 (239)
Q Consensus 233 ~ 233 (239)
+
T Consensus 383 ~ 383 (402)
T PRK06107 383 S 383 (402)
T ss_pred C
Confidence 3
No 269
>PLN02187 rooty/superroot1
Probab=98.36 E-value=2.8e-05 Score=69.56 Aligned_cols=204 Identities=10% Similarity=0.033 Sum_probs=106.0
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-Ccc-eEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GAD-SFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~D-s~~~~~hK~l~~P-~ 78 (239)
+.+|+.+.-+|.||.+.+ +++|+++|++||+++++|.+|+-....-..... +..+. ... ++..++.|.++.| .
T Consensus 205 ~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s-~~~~~~~~~vi~l~SfSK~f~~pGl 283 (462)
T PLN02187 205 TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVS-MGKFASIVPVLTLAGISKGWVVPGW 283 (462)
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcee-HHHhccCCcEEEEecchhhcCCccc
Confidence 456777777899999877 788899999999999999998753321111101 11111 112 3456999996655 3
Q ss_pred cceEEEeeCcccc----cccccCCCCccCCCCceecCC-CCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438 79 DCCCLWATNPEYL----KNKATESKPVVDYKDWQITLS-RSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 79 g~g~l~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
-+|+++..++..+ ...... . ..+....+ ..+....+..+++.-..+-+++..+...+..+++.+.|+++
T Consensus 284 RiG~~v~~~p~~~~~~~~~~~~~----~--~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~ 357 (462)
T PLN02187 284 KIGWIALNDPEGVFETTKVLQSI----K--QNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDI 357 (462)
T ss_pred eeEEEEecCchhHHHHHHHHHHH----H--HhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3677766443211 111000 0 00011000 01111222222332123445666666777788899999887
Q ss_pred CCeEEEcCCC-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHH-HHhcCcEEEEEEEECCEeEEEEEec
Q 048438 154 KRFEVVFPCH-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLES-INASGKAYMTNVVLGGIYAIRFATG 231 (239)
Q Consensus 154 ~g~~~~~~~~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~g~~~~~~~~~~g~~~lR~~~~ 231 (239)
+++.....|+ .+-+.++++..... ...+ ...+..+ +.++|.++.+........++|+++.
T Consensus 358 ~~~~~~~~P~gg~fl~~~l~~~~~~-----------~~~~-------~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~ 419 (462)
T PLN02187 358 PCVVCPKKPESCTYLLTKLELSLMD-----------NIKD-------DIDFCVKLAREENLVFLPGDALGLKNWMRITIG 419 (462)
T ss_pred CCCcCCCCCCEeEEEEeecChhhCC-----------CCCC-------HHHHHHHHHhhCCEEEECccccCCCCeEEEEeC
Confidence 5543333344 34444444321000 0000 1133333 3556666665555545679999987
Q ss_pred CC
Q 048438 232 AT 233 (239)
Q Consensus 232 ~~ 233 (239)
.+
T Consensus 420 ~~ 421 (462)
T PLN02187 420 VE 421 (462)
T ss_pred CC
Confidence 64
No 270
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=98.36 E-value=4.6e-05 Score=67.79 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=105.9
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
..+|++--.....|.+-| +++|.++|++||+.+++|..+.+.--....+.....++. .|.++++ |.+++-...
T Consensus 220 iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~-PDiv~~g--K~l~~G~Pi 296 (443)
T PRK06058 220 LAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIV-PDLITTA--KGIAGGLPL 296 (443)
T ss_pred eEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCC-CCEEEEc--ccccCCCcc
Confidence 445555554555566665 999999999999999999998754221111111123443 7998885 998765557
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~ 159 (239)
|.++.++ +........ ....++ .+.+.......++|+.+..+ +..++..++.+++.++|+++. ...++
T Consensus 297 ~av~~~~-~i~~~~~~~------~~~~T~-~gnpl~~aaa~a~L~~~~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i 365 (443)
T PRK06058 297 SAVTGRA-EIMDAPHPG------GLGGTY-GGNPVACAAALAAIETIEED---DLVARARQIEALMTDRLRALAAEDDRI 365 (443)
T ss_pred EEEEEcH-HHHhhccCC------CCCCCC-CCCHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 7777643 333222110 000111 12222223333344444333 344555577888888886631 12222
Q ss_pred cC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 FP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
.+ ....++.+.+...... ..+ .++...+.+.+.++|.+....... ..+||+.+.--.|++
T Consensus 366 ~~vrg~G~~~~i~~~~~~~~------------~~~----~~~~~~l~~~~~~~Gv~~~~~~~~--~~~lr~~Ppl~~t~~ 427 (443)
T PRK06058 366 GDVRGRGAMIAIELVKPGTT------------EPD----AELTKALAAAAHAAGVIVLTCGTY--GNVIRLLPPLVIGDE 427 (443)
T ss_pred EeeeccceEEEEEEecCCCC------------CCc----HHHHHHHHHHHHHCCeEEeccCCC--CCEEEEECCCccCHH
Confidence 22 2234555555332100 001 234457777888888665321111 258999866555543
No 271
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=98.36 E-value=3e-05 Score=70.29 Aligned_cols=197 Identities=9% Similarity=0.008 Sum_probs=102.2
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEE-EcCcccCCCc-cc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFS-LNAHKWFFAT-LD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~-~~~hK~l~~P-~g 79 (239)
+-+|+++.-+|.||.+.+ +++|+++|++|++++++|.+|.-.............-....-.++ .++.|.++.| .-
T Consensus 282 ~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~R 361 (517)
T PRK13355 282 TKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYR 361 (517)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccc
Confidence 456777778999999988 888999999999999999998643221101111111001122333 5789986544 22
Q ss_pred ceEEEeeC-ccc----ccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHH
Q 048438 80 CCCLWATN-PEY----LKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM----ENLRHFLRSHVNMARLFERLV 150 (239)
Q Consensus 80 ~g~l~~~~-~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~g~~~~~~~~~~la~~l~~~l 150 (239)
+|.+++.. ++. ....... . .... .......+++...+.. +.+-+..++..+..+++.+.|
T Consensus 362 iG~~i~~~~~~~~~~~~~~l~~~-----~----~~~~--~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L 430 (517)
T PRK13355 362 IGWMILSGNKRIAKDYIEGLNML-----A----NMRL--CSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNAL 430 (517)
T ss_pred eEEEEeeCchhhHHHHHHHHHHH-----h----cCcC--CcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777532 221 1111000 0 0000 0111222222222211 111111233445568888999
Q ss_pred hCCCCeEEEcCCCeeEEEE-EEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC--CEeEEE
Q 048438 151 SGDKRFEVVFPCHFAVVCF-RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG--GIYAIR 227 (239)
Q Consensus 151 ~~~~g~~~~~~~~~~iv~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~--g~~~lR 227 (239)
++++|+++. +|+.+...| +++..... ..+ + ...+.+.|.++|..++...... +..++|
T Consensus 431 ~~~~g~~~~-~p~g~fy~~~~l~~~~~~------------~~~----~--~~~~~~ll~~~gV~v~pg~~F~~~~~~~~R 491 (517)
T PRK13355 431 NAIPGISAV-KPKAAFYIFPKIDVKKFN------------IHD----D--EQFALDLLHDKKVLIVQGTGFNWDKPDHFR 491 (517)
T ss_pred hcCCCcccC-CCCeeeEEEeecCcccCC------------CCC----H--HHHHHHHHHhCCEEEeCcchhCCCCcCEEE
Confidence 888888765 566666555 55431000 000 0 0122334556676666555442 467999
Q ss_pred EEec
Q 048438 228 FATG 231 (239)
Q Consensus 228 ~~~~ 231 (239)
+++.
T Consensus 492 is~~ 495 (517)
T PRK13355 492 VVYL 495 (517)
T ss_pred EEeC
Confidence 9984
No 272
>PRK03321 putative aminotransferase; Provisional
Probab=98.34 E-value=8.9e-06 Score=69.96 Aligned_cols=184 Identities=13% Similarity=0.074 Sum_probs=101.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCC-CCcc-eEEEcCcccCCCcc-c
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGV-EGAD-SFSLNAHKWFFATL-D 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~-~~~D-s~~~~~hK~l~~P~-g 79 (239)
+-+|+.+..++.+|.+.|.++|.++|++ +++++++|.+|+.....-. .......+ ..-+ .++.++.|.++.|. -
T Consensus 146 ~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~GlR 224 (352)
T PRK03321 146 TRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDD-VPDGLELVRDHPNVVVLRTFSKAYGLAGLR 224 (352)
T ss_pred CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcC-CCcHHHHHhhCCCEEEEecchHHhhhHHHh
Confidence 4466677888999999999999999997 5999999999874432110 00001100 0123 34568999976441 2
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
+|+++. +++.+....... ..+ ....+....++..+ ..+.+.+..++..+..+++.+.|++. |+.+
T Consensus 225 iG~~v~-~~~~~~~~~~~~------~~~------~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~ 290 (352)
T PRK03321 225 VGYAVG-HPEVIAALRKVA------VPF------SVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRAA-GWTV 290 (352)
T ss_pred hhhhcC-CHHHHHHHHHhc------CCC------CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence 566665 333333222100 001 11222222222222 23344455555556667788888875 7664
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
. ++..+.+.++++.. ...+.+.|.+.|.. +.+ . +...+|+++..+
T Consensus 291 ~-~~~g~~i~i~l~~~-------------------------~~~~~~~l~~~gI~-v~~--~-~~~~iRi~~~~~ 335 (352)
T PRK03321 291 P-PSQANFVWLPLGER-------------------------TADFAAAAAEAGVV-VRP--F-AGEGVRVTIGAP 335 (352)
T ss_pred C-CCCCCEEEEeCCCC-------------------------HHHHHHHHHHCCEE-EEc--c-CCCcEEEeeCCH
Confidence 3 34455555554221 12566677666654 433 2 334699997643
No 273
>PRK06348 aspartate aminotransferase; Provisional
Probab=98.33 E-value=3.3e-05 Score=67.29 Aligned_cols=193 Identities=10% Similarity=0.064 Sum_probs=100.9
Q ss_pred EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceEEEcCcccCCCc-cc
Q 048438 6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSFSLNAHKWFFAT-LD 79 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P-~g 79 (239)
-+|+++.-+|.||.+.+ +++|.++|+++++++++|.+++....... ... .+.+...-.++..++.|.++.| .-
T Consensus 164 ~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~SfSK~~~l~GlR 242 (384)
T PRK06348 164 KAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPERTITFGSFSKDFAMTGWR 242 (384)
T ss_pred cEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC-ccchhhcCCCcCcEEEEecchhccCCcccc
Confidence 34555667889999876 77888889999999999999875432111 111 0111112346677999998644 33
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
+|+++. .+.++...... .....+. ........+..++.. ..+-+++..+...+..+++.+.|++++++++.
T Consensus 243 iG~~v~-~~~~~~~~~~~----~~~~~~~---~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~ 313 (384)
T PRK06348 243 IGYVIA-PDYIIETAKII----NEGICFS---APTISQRAAIYALKH-RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLH 313 (384)
T ss_pred ceeeec-CHHHHHHHHHH----HHhccCC---CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 676665 33333222100 0000011 011111111122221 12223344444556677888888887777654
Q ss_pred cCCCeeEE-EEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438 160 FPCHFAVV-CFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG 231 (239)
Q Consensus 160 ~~~~~~iv-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~ 231 (239)
+++.+.. .++++.... + ...+.+.+.+ .|..+...... .+..++|+++.
T Consensus 314 -~p~gg~~~~~~~~~~~~---------------~-------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~ 366 (384)
T PRK06348 314 -PPKGSIYAFINIKKTGL---------------S-------SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT 366 (384)
T ss_pred -cCCeeEEEEEecccCCC---------------C-------HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec
Confidence 5555543 445542211 0 1145555544 45554433333 23579999975
No 274
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=98.33 E-value=9.7e-07 Score=81.51 Aligned_cols=143 Identities=11% Similarity=0.102 Sum_probs=90.5
Q ss_pred CccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCc---c--eEEEcCcccCC
Q 048438 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGA---D--SFSLNAHKWFF 75 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~---D--s~~~~~hK~l~ 75 (239)
++|+.+++|.. |..|.+-++++|.++|+.++ +|||.||++...+.+.++. -+. .++ | +++-|.||.|.
T Consensus 296 k~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~--~ga~~~~~i~vtQStHKtL~ 370 (714)
T PRK15400 296 TWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMS--GGRVEGKVIYETQSTHKLLA 370 (714)
T ss_pred cCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhh--cCCCCCCceEEEEchhhccc
Confidence 35777766665 88999999999999999887 7999999987655554431 121 135 5 89999999999
Q ss_pred CcccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHHh
Q 048438 76 ATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI----RNYGMENLRHFLRSHVNMARLFERLVS 151 (239)
Q Consensus 76 ~P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~g~~~~~~~~~~la~~l~~~l~ 151 (239)
+...++.+.++.. +.... ++ ..+....++. .+..+.+++ +.+....-++.+++..+++..+++.|.
T Consensus 371 alTQaS~LHvkg~--vd~~~------~n-~a~~m~~STS-PsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~ 440 (714)
T PRK15400 371 AFSQASMIHVKGD--VNEET------FN-EAYMMHTTTS-PHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIK 440 (714)
T ss_pred chhHHhHHHHcCC--CCHHH------HH-HHHHHHcCCC-cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9888888877541 22110 00 0011111111 123333332 222211224566777788888999998
Q ss_pred CCCC------eEEEc
Q 048438 152 GDKR------FEVVF 160 (239)
Q Consensus 152 ~~~g------~~~~~ 160 (239)
++++ |+++.
T Consensus 441 ~~~~~~~~w~~~~~~ 455 (714)
T PRK15400 441 RLRTESDGWFFDVWQ 455 (714)
T ss_pred hCCCcccCceEEecC
Confidence 8877 77764
No 275
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=98.33 E-value=3.7e-06 Score=77.76 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=88.8
Q ss_pred CccEEEEEecCCCCcccccChhHHHHHHHHhCCEE-EEecccccccccCccccc--ccCCCCCcceE---EEcCcccCCC
Q 048438 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWV-HVDAAYAGSACIFPEFRH--FIDGVEGADSF---SLNAHKWFFA 76 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~l-hvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~---~~~~hK~l~~ 76 (239)
++|..+++|.. |..|.+-++++|+++| |+.+ |||.||++...+.+.++. .+.+..++|.. +-|.||.|.+
T Consensus 296 ~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~a 371 (713)
T PRK15399 296 QWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAA 371 (713)
T ss_pred CCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccc
Confidence 46778777665 7899999999999999 7776 899999987654443331 12221246777 9999999999
Q ss_pred cccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 77 TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI----RNYGMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 77 P~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
-..++.+.++.. +....- + ..+....++ ..+..+.+++ +.+....-++.+++..+++..+++.|.+
T Consensus 372 lTQaS~iHvk~~--vd~~~~------n-~a~~m~~ST-SPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~ 441 (713)
T PRK15399 372 FSQASLIHIKGE--YDEETF------N-EAFMMHTST-SPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQR 441 (713)
T ss_pred cchheeeeecCC--CCHHHH------H-HHHHHHcCC-CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999998642 221100 0 000111111 1123333332 2222112245667777888888988887
Q ss_pred CCC------eEEEc
Q 048438 153 DKR------FEVVF 160 (239)
Q Consensus 153 ~~g------~~~~~ 160 (239)
+.+ |+++.
T Consensus 442 ~~~~~~~w~f~~~~ 455 (713)
T PRK15399 442 LREESDGWFFDIWQ 455 (713)
T ss_pred ccccccCceeeecC
Confidence 766 66664
No 276
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=98.32 E-value=1.7e-05 Score=70.27 Aligned_cols=188 Identities=9% Similarity=0.000 Sum_probs=103.3
Q ss_pred EEEEe-cCCCCcccccChh---HHHHHHHHh-CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccc
Q 048438 7 FLCAT-IGTTAITAVDPLK---PLCDVAKQF-GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDC 80 (239)
Q Consensus 7 ~vv~t-~gtt~~G~i~pl~---~i~~i~~~~-gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~ 80 (239)
+++.+ .-+|.||.+.+.+ +|.++|+++ ++|+++|.+++-... +.....+.....--++..++.|.++ | .-+
T Consensus 214 ~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~--~~~~~~~~~~~~~vi~~~SfSK~~~-~GlRi 290 (431)
T PRK15481 214 AVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSS--SPYHSVIPQTTQRWALIRSVSKALG-PDLRL 290 (431)
T ss_pred EEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhcc--CCCCCCCcCCCCCEEEEeeeccccC-CCcee
Confidence 44444 7789999999976 899999999 999999999864321 1111111111112367789999987 5 335
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CH--HHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GM--ENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~--~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
|+++. .+..+...... .... .. ....+...++...+ +. +-+++..+...+..+++.+.|++. ++
T Consensus 291 G~~i~-~~~~~~~~~~~----~~~~--~~----~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~ 358 (431)
T PRK15481 291 AFVAS-DSATSARLRLR----LNSG--TQ----WVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-GI 358 (431)
T ss_pred EEEeC-CHHHHHHHHHH----Hhcc--cc----CCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 65543 33332222100 0000 00 01112222222222 21 123445555667777788888875 77
Q ss_pred EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC---CEeEEEEEecCC
Q 048438 157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG---GIYAIRFATGAT 233 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~---g~~~lR~~~~~~ 233 (239)
++..|...+-+.++++.. ...+.+.|.++|..+.....+. +..++|+++...
T Consensus 359 ~~~~p~gg~f~~~~l~~~-------------------------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~~ 413 (431)
T PRK15481 359 AIPSPGDGLNLWLPLDTD-------------------------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLSTL 413 (431)
T ss_pred ccccCCCeEEEEEECCCC-------------------------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCCC
Confidence 655555566666665431 1145556666777666544331 235899998875
Q ss_pred C
Q 048438 234 L 234 (239)
Q Consensus 234 ~ 234 (239)
.
T Consensus 414 ~ 414 (431)
T PRK15481 414 N 414 (431)
T ss_pred C
Confidence 4
No 277
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.31 E-value=5.9e-05 Score=66.63 Aligned_cols=196 Identities=16% Similarity=0.058 Sum_probs=100.9
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
...+|++--.....|.+.| +++|.++|++||+++++|..+.+......-+.....++ ..|.++ +.|.+++-..
T Consensus 197 ~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~-~pDi~~--lsK~l~~G~p 273 (420)
T TIGR00700 197 NVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGP-EPDLIT--TAKSLADGLP 273 (420)
T ss_pred cEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCC-CCCEEE--eeccccCCcc
Confidence 3456666666666788777 89999999999999999999875422111000001233 378665 6899875455
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----CCC
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG----DKR 155 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----~~g 155 (239)
.|.++.+ +++....... ....++ .+.+.......++++.+..+.+.++ ..++.+++.+.|++ .+.
T Consensus 274 ig~v~~~-~~i~~~~~~~------~~~~T~-~~~pl~~aaa~a~l~~l~~~~~~~~---~~~~g~~l~~~L~~l~~~~~~ 342 (420)
T TIGR00700 274 LSGVTGR-AEIMDAPAPG------GLGGTY-AGNPLACAAALAVLAIIESEGLIER---ARQIGRLVTDRLTTLKAVDPR 342 (420)
T ss_pred eEEEEec-HHHHhhcCCC------CcCCCC-CcCHHHHHHHHHHHHHHHhccHHHH---HHHHHHHHHHHHHHHHhhCCC
Confidence 6777764 3333222110 000111 1112222222233554444444333 33555556555544 333
Q ss_pred eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438 156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
+.-+. ..-.+..+.+.+... . .+ ...+...+.+.+.++|.++.+.... ..++|+++..
T Consensus 343 ~~~vr-g~G~~~~i~~~~~~~------------~-~~---~~~~~~~l~~~~~~~Gv~i~p~~~f--~~~lRl~p~l 400 (420)
T TIGR00700 343 IGDVR-GLGAMIAVELVDPGT------------T-EP---DAGLAERIATAAHAAGLLLLTCGMF--GNIIRFLPPL 400 (420)
T ss_pred EEEee-ccceEEEEEEecCCC------------C-Cc---cHHHHHHHHHHHHHCCeEEeccCCC--CCEEEEECCC
Confidence 33222 223455555532110 0 00 1244557777788888765542211 2689999643
No 278
>PRK07683 aminotransferase A; Validated
Probab=98.30 E-value=4.8e-05 Score=66.37 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=83.6
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccC--CCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--GVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++..+|.||.+.+ +++|+++|+++|+++++|.++......- ....... +...-..+..++.|.++.| .
T Consensus 162 ~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~~~pGl 240 (387)
T PRK07683 162 TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ-PHTSIAHFPEMREKTIVINGLSKSHSMTGW 240 (387)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCC-CcCChhhccCCcCCeEEEeeccccccCccc
Confidence 456677788899999755 8889999999999999999987543211 1111111 1112346788999998766 2
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
-+|++.. .++++...... ..+...+...+....+...+. -+..-+++..++..+..+++.+.|.+. ++.+
T Consensus 241 RiG~i~~-~~~l~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 310 (387)
T PRK07683 241 RIGFLFA-PSYLAKHILKV-------HQYNVTCASSISQYAALEALT-AGKDDAKMMRHQYKKRRDYVYNRLISM-GLDV 310 (387)
T ss_pred eeEEEEc-CHHHHHHHHHH-------HHhccCCCChHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHHc-CCcc
Confidence 2566654 33333322110 001110100111111111222 133334455555667778888888875 6664
Q ss_pred EcCCCeeEEEE
Q 048438 159 VFPCHFAVVCF 169 (239)
Q Consensus 159 ~~~~~~~iv~f 169 (239)
. +++.+...+
T Consensus 311 ~-~~~~~~~~~ 320 (387)
T PRK07683 311 E-KPTGAFYLF 320 (387)
T ss_pred c-CCCeeEEEE
Confidence 4 445554433
No 279
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=98.29 E-value=7.2e-05 Score=66.31 Aligned_cols=193 Identities=13% Similarity=0.056 Sum_probs=99.8
Q ss_pred ccEEEEEecCCCCccccc----ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVD----PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~----pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|++.-.....|.+- .+++|.++|++||+.+++|.+|.+.-....-+.....++. .|.+++ -|.+ |.
T Consensus 218 ~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~-PDi~~~--gK~~--~~- 291 (431)
T TIGR03251 218 DIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQ-PDIVAF--GKKT--QV- 291 (431)
T ss_pred cEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCC-CCEEEe--cccC--cc-
Confidence 456777776666677753 5899999999999999999998853222111110123443 999986 4554 32
Q ss_pred ceEEEeeCc--ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCe
Q 048438 80 CCCLWATNP--EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRF 156 (239)
Q Consensus 80 ~g~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~ 156 (239)
+|++ .++. +........ .+....++ .+.+.......++++.+..+++ .++..++.+++.+.|+++ ...
T Consensus 292 ~g~~-~~~~i~~~~~~~~~~----~~~~~~T~-~gnpl~~aaa~a~L~~l~~~~l---~~~~~~~g~~l~~~L~~l~~~~ 362 (431)
T TIGR03251 292 CGIM-AGRRVDEVADNVFAV----PSRLNSTW-GGNLVDMVRATRILEIIEEERL---VDNARVQGAHLLARLHELAAEF 362 (431)
T ss_pred ceEE-ecchHHHhhhhcccC----ccccCCCC-CCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444 3322 111100000 00000111 1222222233344555433333 334446666666666542 011
Q ss_pred E-EEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 157 E-VVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 157 ~-~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
. ++.+. ...++.+.+++ ......+.+.|.++|.+... .+...+|+++.-.
T Consensus 363 ~~~i~~vrg~G~~~~i~~~~-----------------------~~~~~~~~~~l~~~Gvl~~~----~g~~~lr~~P~l~ 415 (431)
T TIGR03251 363 PHLVSNPRGRGLMCAFDLPS-----------------------TADRDEVIRQLYREGVLLLG----CGERSIRFRPPLT 415 (431)
T ss_pred ccceecccccceeEEEEeCC-----------------------HHHHHHHHHHHHhCCeEEec----CCCCeEEEECCcc
Confidence 1 22222 23466777643 12334677788877766432 2446799998877
Q ss_pred CCCcC
Q 048438 234 LTEER 238 (239)
Q Consensus 234 ~t~~~ 238 (239)
+|++|
T Consensus 416 ~t~~e 420 (431)
T TIGR03251 416 VTREE 420 (431)
T ss_pred CCHHH
Confidence 77653
No 280
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=98.29 E-value=5.4e-05 Score=67.34 Aligned_cols=201 Identities=11% Similarity=0.034 Sum_probs=104.8
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
..+|++--...+.|.+.| +++|.++|++||+++++|.+|.+.--....+.....++. .|.++ .-|.+++-...
T Consensus 208 iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~-pDi~t--~gK~l~~G~p~ 284 (445)
T PRK08593 208 VACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNIT-PDLMS--FGKSLAGGMPM 284 (445)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCC-CCEee--ecccccCCccc
Confidence 456666666666788877 999999999999999999998543111110000122443 78775 47887643346
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~ 159 (239)
|++..+ +++....... . ..++. .+.+.......++++.+-.+ +..++..++.++|.+.|+++. ...++
T Consensus 285 gav~~~-~~i~~~~~~~--~----~~~T~-~~~pl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~v 353 (445)
T PRK08593 285 SAIVGR-KEIMESLEAP--A----HLFTT-GANPVSCAAALATIDMIEDE---SLLQRSAEKGEYARKRFDQWVSKYNFV 353 (445)
T ss_pred EEEEEc-HHHHhhhccC--C----CCCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 666664 3333322110 0 00111 12222223333445554333 345556677778887776531 11222
Q ss_pred cCC-C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 FPC-H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~~~-~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
... . --++.+.+..... . ...+ ......+..++.++|.+... . +...+|+++....|++
T Consensus 354 ~~vrG~Gl~~gi~l~~~~~----------~-~~~~----~~~~~~~~~~~~~~Gv~~~~---~-~~~~lr~~p~l~~t~~ 414 (445)
T PRK08593 354 GDVRGYGLSIGIDIVSDKK----------L-KTRD----NEAALKICNYCFEHGVVIIA---V-AGNVLRFQPPLVITYE 414 (445)
T ss_pred EEEeccceEEEEEEecCCC----------c-CCCc----HHHHHHHHHHHHHCCeEEec---c-CCCEEEEECCCccCHH
Confidence 221 1 1233344432100 0 0001 23345677788888865432 1 3368999988777765
Q ss_pred C
Q 048438 238 R 238 (239)
Q Consensus 238 ~ 238 (239)
|
T Consensus 415 ~ 415 (445)
T PRK08593 415 Q 415 (445)
T ss_pred H
Confidence 3
No 281
>PRK09105 putative aminotransferase; Provisional
Probab=98.28 E-value=2.3e-05 Score=68.07 Aligned_cols=181 Identities=11% Similarity=0.038 Sum_probs=102.0
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEE-cCcccCCCccc--
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSL-NAHKWFFATLD-- 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~-~~hK~l~~P~g-- 79 (239)
+-+|+.+.-+|.||.+.+.++|.++++. +++|+++|.+|.-.. ..+.... +.. ...+.+++ ++.|.++ ..|
T Consensus 166 ~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~-~~~s~~~-~~~-~~~~vi~~~SfSK~~g-~~GlR 241 (370)
T PRK09105 166 AGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFS-DAPSVVD-LVA-QRKDLIVLRTFSKLYG-MAGMR 241 (370)
T ss_pred CCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhc-cCcchHH-HHh-hCCCEEEEecccHhhc-CCccc
Confidence 3456677789999999999999888764 489999999985321 1110000 111 12455554 7778864 445
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
+|+++. +++.+...... . .+ .........+...+. .+-+++..++..+..+++.+.|++. |+++
T Consensus 242 iG~~v~-~~~~i~~l~~~-----~--~~------~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~ 306 (370)
T PRK09105 242 LGLAAA-RPDLLAKLARF-----G--HN------PLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK-GYKC 306 (370)
T ss_pred eeeeec-CHHHHHHHHhc-----C--CC------CcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCc
Confidence 777775 33333322110 0 00 011122222333232 2334555566778888899999885 7775
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEEC-CEeEEEEEecC
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLG-GIYAIRFATGA 232 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-g~~~lR~~~~~ 232 (239)
. +++.+.+.+.++.. ..++.+.|.++|.. +.. ... ...++|+++..
T Consensus 307 ~-~~~~~f~~~~~~~~-------------------------~~~l~~~L~~~gI~-v~~-~~~~~~~~~Ris~~~ 353 (370)
T PRK09105 307 T-PSQANCFMVDVKRP-------------------------AKAVADAMAKQGVF-IGR-SWPIWPNWVRVTVGS 353 (370)
T ss_pred C-CCCCcEEEEeCCCC-------------------------HHHHHHHHHHCCcE-Eec-CCCCCCCeEEEEcCC
Confidence 5 55666655544311 12566677767554 321 122 25789999774
No 282
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=98.28 E-value=3.5e-05 Score=67.62 Aligned_cols=199 Identities=14% Similarity=0.046 Sum_probs=103.4
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCC---cceEEEcCcccCCCc-
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEG---ADSFSLNAHKWFFAT- 77 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~---~Ds~~~~~hK~l~~P- 77 (239)
+-+|+++.-+|.||.+.+ +++|+++|++|++++++|.++.-.... +.....+..+.. .-+++.|+.|.++.|
T Consensus 174 ~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~-~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pG 252 (402)
T TIGR03542 174 IDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISD-PSLPHSIFEIPGAKECAIEFRSFSKTAGFTG 252 (402)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccC-CCCCcchhhCCCCcccEEEEecCccccCCCC
Confidence 345666678899999888 788899999999999999998743211 100000111111 224577999987644
Q ss_pred ccceEEEeeCcccccccccC-CCCccCCCCceecCCCCCChHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438 78 LDCCCLWATNPEYLKNKATE-SKPVVDYKDWQITLSRSFRSLKLWFVIRNY---GMENLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
.-+|+++.. ++++...... ............ . ....+....+...+ ....+.+..+...+..+++.+.|++.
T Consensus 253 lRiG~~i~~-~~l~~~~~~~~~~~~~~~~~~~~-~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 328 (402)
T TIGR03542 253 VRLGWTVVP-KELTYADGHSVIQDWERRQCTKF-N--GASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA 328 (402)
T ss_pred cceEEEEec-HHHhhcchhhHHHHHHHHhhhcc-c--CCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346766653 3333110000 000000000000 0 01111111112222 12233444455566677888888875
Q ss_pred CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEEe
Q 048438 154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFAT 230 (239)
Q Consensus 154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~~ 230 (239)
++++..+...+-+.+++++.- + ...+.+.|.++ |......... .+..++|+++
T Consensus 329 -~~~~~~~~~~~f~~v~l~~~~----------------~-------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~ 384 (402)
T TIGR03542 329 -GFKVYGGEHAPYLWVKTPEGI----------------S-------SWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSA 384 (402)
T ss_pred -CceecCCCceeEEEEECCCCC----------------C-------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEe
Confidence 777654445666777765421 0 11456666544 5554443332 2357899996
Q ss_pred cC
Q 048438 231 GA 232 (239)
Q Consensus 231 ~~ 232 (239)
..
T Consensus 385 ~~ 386 (402)
T TIGR03542 385 FG 386 (402)
T ss_pred cC
Confidence 44
No 283
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=98.28 E-value=6.5e-05 Score=66.10 Aligned_cols=208 Identities=10% Similarity=0.031 Sum_probs=104.4
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCc--ceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGA--DSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~--Ds~~~~~hK~l~~P-~ 78 (239)
+.+++.+.-+|.||.+.+ +++|+++|++|++++++|.+|............ ...+... =+++.++.|.++.| .
T Consensus 171 ~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~-~~~~~~~~~vi~~~SfSK~f~~pGl 249 (409)
T PLN00143 171 TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVP-MGLFASIVPVITLGSISKRWMIPGW 249 (409)
T ss_pred CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcc-hhhhcccCcEEEEccchhhcCCCcc
Confidence 345566667899999888 777888899999999999998753321110000 1111111 14677999995554 4
Q ss_pred cceEEEeeCcc-cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPE-YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
-+|+++..++. .+....... ......... ..+.......+..++..-..+-+++..++..+..+++.+.|.++++..
T Consensus 250 RvG~~v~~~p~~~~~~~~~~~-~~~~~~~~~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 327 (409)
T PLN00143 250 GLGWLVTCDPSGLLQICEIAD-SIKKALNPA-PFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIM 327 (409)
T ss_pred ceEEEEeeCchhhhhhHHHHH-HHHHHHhcc-CCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 47777764332 211100000 000000000 000011111111222211233456666666677778888888765443
Q ss_pred EEcCC-CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHH-HhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 158 VVFPC-HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESI-NASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 158 ~~~~~-~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
...+| ..+-+.++++.... ... .....+...+ .++|..+..........++|+++..+
T Consensus 328 ~~~~p~gg~f~w~~l~~~~~--------------~~~----~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi~~~~~ 387 (409)
T PLN00143 328 CPQKAEGAFFALVKLNLLLL--------------EDI----EDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVE 387 (409)
T ss_pred CCCCCCeeEEEEEecchhhc--------------CCC----CCHHHHHHHHHHhCCEEEeCccccCCCCeEEEEEcCC
Confidence 33334 34456666642100 000 0011333333 45666655555554567999998743
No 284
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=98.27 E-value=5.5e-05 Score=64.20 Aligned_cols=195 Identities=15% Similarity=0.101 Sum_probs=121.2
Q ss_pred EEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccccc--c-CCCCCcceEEEcCcccCCCc-c
Q 048438 6 LFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF--I-DGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~--~-~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
-+++...-.|.+|.+ +.|.+|+++|++||+.++.|.-|+--.+....+-.. + .....--+.+.++.|.+..+ .
T Consensus 160 kl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL 239 (388)
T COG1168 160 KLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGL 239 (388)
T ss_pred cEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhh
Confidence 455667778899985 678999999999999999999987544432111110 1 11111234456779998654 2
Q ss_pred cceEEEeeCccc----ccccccCCCCccCCCCceecCCCCCChHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 79 DCCCLWATNPEY----LKNKATESKPVVDYKDWQITLSRSFRSLKLWFV--IRNYGMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 79 g~g~l~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
.|+.+++.++.+ ++..... ......++++.+. .-..|.+-+.+..++...+.+++.+.+.+
T Consensus 240 ~~a~~Ii~n~~lr~~~~~~l~~~-------------~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~ 306 (388)
T COG1168 240 KCAYIIISNRELRAKFLKRLKRN-------------GLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNK 306 (388)
T ss_pred hheeEEecCHHHHHHHHHHHHHh-------------cCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566655433 2222110 0011223333332 22347777788888888999999999976
Q ss_pred -CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE---ECCEeEEEE
Q 048438 153 -DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV---LGGIYAIRF 228 (239)
Q Consensus 153 -~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~---~~g~~~lR~ 228 (239)
+|++++..|..+-++-..+...+.. + .++.+.|.++.++.+.... ..|...+|+
T Consensus 307 ~~P~v~v~~p~gTYL~WLD~r~l~l~--------------d--------~~l~~~ll~~akVal~~G~~FG~~g~gf~Rl 364 (388)
T COG1168 307 HLPGVKVTEPQGTYLAWLDCRELGLD--------------D--------SELAEFLLEEAKVALSPGSTFGEEGSGFVRL 364 (388)
T ss_pred hCCCcEEecCCCceeeeeeccccCCC--------------h--------HHHHHHHHHhhcEeccCCCccCcCCCceEEE
Confidence 5899999877777777777664421 0 2556667777777665533 346789998
Q ss_pred EecCCCC
Q 048438 229 ATGATLT 235 (239)
Q Consensus 229 ~~~~~~t 235 (239)
-+..|..
T Consensus 365 N~acpr~ 371 (388)
T COG1168 365 NFACPRA 371 (388)
T ss_pred ecCCCHH
Confidence 8776653
No 285
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=98.26 E-value=0.00011 Score=64.57 Aligned_cols=194 Identities=11% Similarity=0.053 Sum_probs=101.4
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+.+|++.-.....|.+.| +++|.++|++||+++++|.+|.+......-+.....++ ..|.++ +.|.+++-...
T Consensus 188 ~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~-~pdi~t--~~K~l~~G~pi 264 (408)
T PRK04612 188 VAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQV-TPDIVT--LAKALGGGFPI 264 (408)
T ss_pred EEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCC-CCCEEE--EcchhcCCCce
Confidence 445555544444445443 89999999999999999999875322111111111122 255554 57988653446
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~ 159 (239)
|.++.++ +........ ....++ .+.+........+|+.+.. ++..++..++.+++.+.|+++. .+.++
T Consensus 265 ga~~~~~-~~~~~~~~~------~~~~t~-~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~i 333 (408)
T PRK04612 265 GAMLAGP-KVAETMQFG------AHGTTF-GGNPLAAAVARVALRKLAS---PQIAANVARQSAALRAGLEALNAEFGVF 333 (408)
T ss_pred EEEEECH-HHHhhhcCC------CcCCCC-CCCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 6666543 322221110 000111 1222333333344554433 3455666788888888887641 12222
Q ss_pred cC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 FP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
.. ...-++.+.+.+.. .+....+.+.+.++|.+... .|...+|+++.-..|++
T Consensus 334 ~~vrg~Gl~~~i~~~~~~---------------------~~~a~~i~~~l~~~Gvlv~~----~g~~~lRl~Ppl~it~e 388 (408)
T PRK04612 334 AQVRGRGLMLGAVLAPAH---------------------AGQAGAILDLAAEHGLLLLQ----AGPDVLRFVPALNLTDA 388 (408)
T ss_pred eeeeccceEEEEEecCch---------------------hhHHHHHHHHHHHCCeEEee----CCCCEEEEcCCccCCHH
Confidence 22 12335555553211 12234667778888866542 35578999976655543
No 286
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=98.24 E-value=0.0001 Score=65.15 Aligned_cols=201 Identities=9% Similarity=0.033 Sum_probs=100.7
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccc-cCCCCCcceEEEcCcccCCCcc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~-~~~~~~~Ds~~~~~hK~l~~P~ 78 (239)
.+.+|++.-...+.|.+-| +++|.++|++||+++++|.+|++.... ..+... ..++ ..| ..++.|.++.-.
T Consensus 199 ~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~-g~~~~~~~~~~-~pd--i~s~sK~l~~G~ 274 (425)
T PRK08088 199 DIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRT-GTLFAMEQMGV-AAD--LTTFAKSIAGGF 274 (425)
T ss_pred ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-cchhHHhhcCC-CCC--EEEEeccccCCC
Confidence 3456666666666677766 999999999999999999998852111 111100 1222 256 456689987444
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC----CC
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG----DK 154 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~----~~ 154 (239)
..|.+... +++........ ...+.. +...........++.+.. ++.+++..++.+++.+.|.+ .|
T Consensus 275 rig~v~~~-~~~~~~~~~~~------~~~t~~-~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~ 343 (425)
T PRK08088 275 PLAGVTGR-AEVMDAIAPGG------LGGTYA-GNPIACAAALAVLKVFEQ---ENLLQKANALGEKLKDGLLAIAEKHP 343 (425)
T ss_pred cceeeEec-HHHHhhcCCCC------CCCCCC-cCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46777663 33332221100 000111 111112222233443322 33444444555555555543 33
Q ss_pred CeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 155 RFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 155 g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
.+.-+..+ -.++.+.+..... ...+ + ......+.+++.++|.++.+.... ...+|+++....
T Consensus 344 ~~~~v~g~-G~~~~l~l~~~~~------------~~~p-~--~~~~~~l~~~~~~~Gv~~~~~~~~--~~~iRl~~~~~~ 405 (425)
T PRK08088 344 EIGDVRGL-GAMIAIELFEDGD------------HSKP-N--AKLTAQIVARARDKGLILLSCGPY--YNVLRILVPLTI 405 (425)
T ss_pred CeEEEecc-ceEEEEEEecCCC------------CCCC-C--HHHHHHHHHHHHhCCCEEecCCCC--CCEEEEECCCCc
Confidence 33222222 3345666632110 0000 0 223457778888888765532111 367999986555
Q ss_pred CCc
Q 048438 235 TEE 237 (239)
Q Consensus 235 t~~ 237 (239)
|++
T Consensus 406 t~~ 408 (425)
T PRK08088 406 EDA 408 (425)
T ss_pred CHH
Confidence 543
No 287
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=98.24 E-value=6.4e-05 Score=65.58 Aligned_cols=195 Identities=13% Similarity=0.078 Sum_probs=102.3
Q ss_pred cEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-C--cceEEEcCcccCCCc-
Q 048438 5 PLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-G--ADSFSLNAHKWFFAT- 77 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~--~Ds~~~~~hK~l~~P- 77 (239)
+-+|+.+.-+|.||.+.+. ++|+++|++||+++++|.++.-....-......+..++ . .-.++.++.|.++.|
T Consensus 166 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~G 245 (388)
T PRK07366 166 ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGG 245 (388)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcc
Confidence 4456666678999998775 56677899999999999998644321110000011111 1 124567999998654
Q ss_pred ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY--GMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
.-+|.++. +++++....... .. +.. +. ...+ ...++..+ ..+-+++..+...+..+++.+.|++. +
T Consensus 246 lRiG~~v~-~~~li~~l~~~~-~~-----~~~--~~-~~~~-~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~-~ 313 (388)
T PRK07366 246 FRIGFAIG-NAQLIQALRQVK-AV-----VDF--NQ-YRGI-LNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI-G 313 (388)
T ss_pred hhheehcC-CHHHHHHHHHHH-hh-----ccc--CC-CHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-C
Confidence 33666653 334433221100 00 000 00 0001 11111121 13344555666667778888888876 7
Q ss_pred eEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEEC--CEeEEEEEecC
Q 048438 156 FEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVLG--GIYAIRFATGA 232 (239)
Q Consensus 156 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~~--g~~~lR~~~~~ 232 (239)
+....+...+-+.+.+++... .+ ...+.+.+. +.|.......... +..++|+++..
T Consensus 314 ~~~~~p~~g~f~~~~~~~~~~--------------~~-------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~ 372 (388)
T PRK07366 314 WPVPLPEATMYVWAKLPEPWQ--------------GN-------SVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALVH 372 (388)
T ss_pred CcccCCCeeEEEEEECCcccC--------------CC-------HHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEecC
Confidence 765445455556666653200 00 124555554 3455555444332 34789999864
No 288
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.2e-05 Score=65.69 Aligned_cols=205 Identities=12% Similarity=0.065 Sum_probs=124.6
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc----ccCCCCCcceEEEcCcccCCCcccceE
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH----FIDGVEGADSFSLNAHKWFFATLDCCC 82 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~----~~~~~~~~Ds~~~~~hK~l~~P~g~g~ 82 (239)
+||+-.---++|.+.|+.+|.++..+|...+++|..++.|.+-- ..+. .--.+..+|.++++..-.++. .|.
T Consensus 236 fiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~-~GrGvteH~~v~~~~iDiv~~sm~~alas---~Gg 311 (467)
T KOG1358|consen 236 FIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGK-TGRGVTEHFGVPITDIDIVTASMETALAS---GGG 311 (467)
T ss_pred EEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccc-cCccccccCCCCccceeeeeecccccccc---cCc
Confidence 34444446789999999999999999999999999998886632 1111 111234699999998777654 445
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCC-CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRS-FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
+.+.+.-.+....-. ...+.+..+.+ +.+-+...++..+.++ .++++.....+..+...|+...++++.+.
T Consensus 312 Fc~G~~~i~~hQrLS------g~~Y~fSAslPp~la~aa~~ai~i~~~~--p~~~~~L~~k~~~~H~~l~~~s~~~v~~~ 383 (467)
T KOG1358|consen 312 FCAGKSFIADHQRLS------GSGYCFSASLPPYLAGAAIKAILIEEWN--PEIVQPLRAKVAKFHAALSSNSGFIVSGS 383 (467)
T ss_pred eeecceeeEeeeecc------ccceeeeccCchhhhhhHHHHHHHHhhC--cchhhhhhccccccchhhhcCCceEEecC
Confidence 555442222111100 01122222221 1122222233322222 23555566677778888888888999999
Q ss_pred CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECC------EeEEEEEecCCCC
Q 048438 162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG------IYAIRFATGATLT 235 (239)
Q Consensus 162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g------~~~lR~~~~~~~t 235 (239)
+.++|+-..+.+.. .+.++-..+-+.+.++...++...+.-....+ ..-||+|+..-++
T Consensus 384 ~~SPi~hl~l~~~~---------------~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~~~a~~s 448 (467)
T KOG1358|consen 384 PESPIIHLQLERSY---------------GSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRICVSAGMS 448 (467)
T ss_pred cCCceeeeeecccc---------------cchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEEEeCCCC
Confidence 99999999987743 23344445556777777666555444343322 2579999988887
Q ss_pred CcC
Q 048438 236 EER 238 (239)
Q Consensus 236 ~~~ 238 (239)
++|
T Consensus 449 eee 451 (467)
T KOG1358|consen 449 EEE 451 (467)
T ss_pred HHH
Confidence 764
No 289
>PRK06105 aminotransferase; Provisional
Probab=98.23 E-value=4.9e-05 Score=67.87 Aligned_cols=207 Identities=9% Similarity=0.033 Sum_probs=105.8
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
.+.+|++--...+.|.+.| +++|.++|++||+.+++|.+|.+.-....-+.....++. .|.+++ -|.+++- .
T Consensus 218 ~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~-PDi~~~--gK~lggG~~ 294 (460)
T PRK06105 218 TIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIK-PDILVM--SKQLSSSYQ 294 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCC-CCeeee--ecccccCcc
Confidence 4566666666667788888 999999999999999999998543222211111123454 887765 6887653 2
Q ss_pred cceEEEeeCcccccccccCCC--CccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 79 DCCCLWATNPEYLKNKATESK--PVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
..|.++.++ ++......... ..+. ...+ ..+.+..+....++|+.+-.+ +..++..++.++|.+.|+++...
T Consensus 295 P~~av~~~~-~i~~~~~~~~~~~~~~~-h~~T-~~gnpl~~aaa~a~L~~i~~~---~l~~~v~~~g~~l~~~L~~l~~~ 368 (460)
T PRK06105 295 PLSAVLMNE-KVYDPIADESGKIGTFG-HGFT-ASGHPVAAAVALENLAIIEER---DLVGNAAERGARLQARLRALADH 368 (460)
T ss_pred cceEEEEcH-HHHHHHhcccccCcccc-cCCC-CCCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcC
Confidence 356666643 33222111000 0000 0011 112222223333445555433 44556668888888888765322
Q ss_pred EEEcCC-C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 157 EVVFPC-H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 157 ~~~~~~-~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
.++.+. . --+..+.+...... . ............+...+.++|.++.. . | .++|+++.--.
T Consensus 369 ~~v~~vrG~Gl~~gie~~~~~~~---------~---~~~~~~~~~a~~i~~~~~~~Gvl~~~---~-g-~~i~l~Ppl~i 431 (460)
T PRK06105 369 PLVGEVRGVGLIAAVELVADKAT---------K---TPFEPPGKVGARANAAAHEHGVISRA---M-G-DTLAFCPPLII 431 (460)
T ss_pred CCeEEEEecceEEEEEEecCccc---------C---CCCCchhHHHHHHHHHHHHCCeEEEe---c-C-CEEEEECCCcc
Confidence 222221 1 22445555321100 0 00000022334677778878866532 1 2 47898755433
Q ss_pred CC
Q 048438 235 TE 236 (239)
Q Consensus 235 t~ 236 (239)
|+
T Consensus 432 t~ 433 (460)
T PRK06105 432 TA 433 (460)
T ss_pred CH
Confidence 43
No 290
>PRK07678 aminotransferase; Validated
Probab=98.23 E-value=9.3e-05 Score=65.98 Aligned_cols=211 Identities=11% Similarity=0.036 Sum_probs=106.8
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
.+.+|++--.....|.+.| ++++.++|++||+.+++|..+.+.--...-+.....++. .|.+++ -|.+++- .
T Consensus 213 ~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~-PDivt~--gK~lggG~~ 289 (451)
T PRK07678 213 TIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVK-PDIITM--AKGITSAYL 289 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCC-CCEEEe--ecccccCCc
Confidence 3456666555555677766 899999999999999999998543221111110023554 998876 6887653 2
Q ss_pred cceEEEeeCcccccccccCCC-CccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCe
Q 048438 79 DCCCLWATNPEYLKNKATESK-PVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRF 156 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~ 156 (239)
.+|.+.+++ +.......... ..+. ...+ ..+.+.......++++.+..+ +..++..++.++|.+.|++. ...
T Consensus 290 Pi~av~~~~-~i~~~~~~~~~~~~~~-h~~T-~~gnp~~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~~~~~~ 363 (451)
T PRK07678 290 PLSATAVKK-EIYEAFKGKGEYEHFR-HVNT-FGGNPAACALALKNLEIMENE---NLIERSAQLGELLLEQLKEELGEH 363 (451)
T ss_pred ceeEEEEcH-HHHHHHhccCcccccc-cCCC-CCcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777654 33221111000 0000 0011 112222223333445544333 34455567777777777532 111
Q ss_pred EEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEE--EEECCEeEEEEEecC
Q 048438 157 EVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN--VVLGGIYAIRFATGA 232 (239)
Q Consensus 157 ~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~--~~~~g~~~lR~~~~~ 232 (239)
.++.. -...++.+.+...... ..+.+ .+....+.+.|.++|.+.... ++..+...+|+++..
T Consensus 364 ~~v~~vrg~Gl~~~i~~~~~~~~----------~~~~~----~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl 429 (451)
T PRK07678 364 PLVGDIRGKGLLVGIELVNDKET----------KEPAD----NDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPL 429 (451)
T ss_pred CCEEEEEeeceEEEEEEecCCcc----------cCcCc----hHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCC
Confidence 11111 1223555555321100 00001 234457778888888664321 112345789998776
Q ss_pred CCCCc
Q 048438 233 TLTEE 237 (239)
Q Consensus 233 ~~t~~ 237 (239)
..|++
T Consensus 430 ~it~~ 434 (451)
T PRK07678 430 VISSE 434 (451)
T ss_pred cCCHH
Confidence 66654
No 291
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=98.23 E-value=7e-05 Score=66.83 Aligned_cols=199 Identities=14% Similarity=0.042 Sum_probs=107.6
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
..+|++--.....|.+.| +++|.++|++||+++++|.+|.+.--...-+.....++. .|.++ +-|.+++-.+.
T Consensus 223 iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PDiv~--~gK~l~gG~pi 299 (457)
T PRK05639 223 VAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVK-PDLII--FGKGVASGMGL 299 (457)
T ss_pred eEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCC-CCEEE--echhhcCCCcc
Confidence 455555555555677665 789999999999999999998753121111111123454 89888 58998755666
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~~~ 159 (239)
|+++.++ +... .... ... .+. .+.+.......++++.+..+ +..++..++.++|++.|+++ .+..++
T Consensus 300 ~av~~~~-~i~~-~~~~--~~~----~T~-~g~p~~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~~ 367 (457)
T PRK05639 300 SGVIGRK-ELMD-LTSG--SAL----LTP-AANPVISAAAEATLEIIEEE---NLLKNALKVGEFIKKRLLEMKESFEVI 367 (457)
T ss_pred eeEEehH-HHHh-hcCC--Ccc----cCC-CcCHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 7777643 3333 1110 000 111 12222223333445554333 34455567888888888763 123333
Q ss_pred cCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 FPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
.+. .--++.+.+..+... .+ ......+.+.+.++|.+... . -.+..++|+++.--.|++
T Consensus 368 ~~VrG~Gl~~gve~~~~~~~-------------~~----~~~~~~~~~~~~~~Gv~~~~-~-g~~~~~lr~~Ppl~it~~ 428 (457)
T PRK05639 368 GDVRGKGLMIGVEIVKENGK-------------PD----PELTGKICWRAFELGLILPS-Y-GMFGNVIRITPPLVITKE 428 (457)
T ss_pred EeeccceeEEEEEEecCCCC-------------CC----HHHHHHHHHHHHhCCeEEee-c-CCCCCEEEEeCCCccCHH
Confidence 222 123445554321100 01 23445777788888866432 2 112468999977666554
No 292
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=98.23 E-value=6.4e-06 Score=69.20 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=98.8
Q ss_pred CccEEEEEecCCCCccc---ccChhHHHHHHHHhCCEEEEeccccc-ccccCc----ccccc-c-----CCCCCcceEEE
Q 048438 3 LIPLFLCATIGTTAITA---VDPLKPLCDVAKQFGIWVHVDAAYAG-SACIFP----EFRHF-I-----DGVEGADSFSL 68 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~---i~pl~~i~~i~~~~gi~lhvD~A~~~-~~~~~~----~~~~~-~-----~~~~~~Ds~~~ 68 (239)
.+|.++.....++.-|. +.+++++.++|++|+|.+++|+|..+ .+..+. .++.+ + +-+..+|-++.
T Consensus 185 nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~m 264 (471)
T COG3033 185 NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTM 264 (471)
T ss_pred cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhhee
Confidence 46888888888888887 78899999999999999999998654 333332 22221 1 11235999999
Q ss_pred cCcccCCCcccceEEEeeCccccc---ccc---cCCCCccCCCCceecCCCCCChHHHHHHHHH-hCHHHHHHHHHHHHH
Q 048438 69 NAHKWFFATLDCCCLWATNPEYLK---NKA---TESKPVVDYKDWQITLSRSFRSLKLWFVIRN-YGMENLRHFLRSHVN 141 (239)
Q Consensus 69 ~~hK~l~~P~g~g~l~~~~~~~l~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~g~~~~~~~~~~ 141 (239)
|+-|=..++.| |++.++++.+.. ... ....+..++ .--.||...+++. .|+. +. ...+++..+
T Consensus 265 S~KKD~lvnmG-Gfl~~~D~~~fDvy~~~~~~~V~~eG~~tY---Ggl~GrdmealAv--GL~e~~~----~~yl~~Rv~ 334 (471)
T COG3033 265 SAKKDGLVNMG-GFLCFKDDSFFDVYEECRTLVVVQEGFPTY---GGLAGRDMEALAV--GLREGVN----FDYLAHRVA 334 (471)
T ss_pred eccccceeccc-cEEEecCccHHHHHHHHHhheEeecccccc---CcccchhHHHHHH--HHHHhcC----cHHHHHHHH
Confidence 99999999986 788888764311 100 001112222 1112344433322 2221 11 345566667
Q ss_pred HHHHHHHHHhCCCCeEEEcCCCeeEEEEE
Q 048438 142 MARLFERLVSGDKRFEVVFPCHFAVVCFR 170 (239)
Q Consensus 142 la~~l~~~l~~~~g~~~~~~~~~~iv~f~ 170 (239)
..+||.++|.+. |+.|+.|..-.-|.+.
T Consensus 335 Qv~YL~~~l~~~-GVpi~~paGGHavfvd 362 (471)
T COG3033 335 QVQYLADGLEEA-GVPIVQPAGGHAVFVD 362 (471)
T ss_pred HHHHHHHHHHhc-CCeeEecCCCceEEee
Confidence 788999999986 9988877655555444
No 293
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=98.23 E-value=0.00011 Score=65.56 Aligned_cols=201 Identities=12% Similarity=0.051 Sum_probs=103.9
Q ss_pred CCccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCC------CCcceEEEc
Q 048438 2 GLIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGV------EGADSFSLN 69 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~------~~~Ds~~~~ 69 (239)
|..+-+|+.+.-+|.+|.+-| +++|.++|++|++++++|.+|+.....-+.+.. ....+ +.+ .++.+
T Consensus 198 ~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v-~vi~s 276 (447)
T PLN02607 198 NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERV-HIVYS 276 (447)
T ss_pred CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcE-EEEEc
Confidence 445556777888999999877 778889999999999999999764332111111 11111 112 34679
Q ss_pred CcccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-----HHHHHHHHHHHHHH
Q 048438 70 AHKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-----ENLRHFLRSHVNMA 143 (239)
Q Consensus 70 ~hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~g~~~~~~~~~~la 143 (239)
+.|-++.| .-+|+++..++..+...... ..+.. . ..+....+...+.. .-+++..++..+..
T Consensus 277 ~SK~fg~~GlRvG~ivs~n~~l~~~~~~~-------~~~~~-~----s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~ 344 (447)
T PLN02607 277 LSKDLGLPGFRVGTIYSYNDKVVTTARRM-------SSFTL-V----SSQTQHLLASMLSDEEFTENYIRTNRERLRKRY 344 (447)
T ss_pred chhcCCCCcceEEEEEEcCHHHHHHHHHH-------hhcCC-C----CHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 99998644 33677776443332211100 00000 0 01111111112211 11233334445566
Q ss_pred HHHHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEEC-
Q 048438 144 RLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLG- 221 (239)
Q Consensus 144 ~~l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~- 221 (239)
+.+.+.|++. |++.+.+....-+.++++..-. ... .+...++.+++.++ |..+.++....
T Consensus 345 ~~~~~~L~~~-gi~~~~~~ag~fvw~~L~~~~~--------------~~~---~~~e~~l~~~ll~~~gV~v~pG~~f~~ 406 (447)
T PLN02607 345 EMIVQGLRRA-GIECLKGNAGLFCWMNLSPLLE--------------TPT---REGELALWDSILREVKLNISPGSSCHC 406 (447)
T ss_pred HHHHHHHHhC-CCCcccCCeeEEEEEEchHhhc--------------CCC---chhHHHHHHHHHHhCCEEEcCccccCC
Confidence 6777888875 7765533333345555532100 000 01112566666654 44444334332
Q ss_pred -CEeEEEEEecCC
Q 048438 222 -GIYAIRFATGAT 233 (239)
Q Consensus 222 -g~~~lR~~~~~~ 233 (239)
...|+|+++.+.
T Consensus 407 ~~~g~fRi~fa~~ 419 (447)
T PLN02607 407 SEPGWFRVCFANM 419 (447)
T ss_pred CCCCEEEEEeccC
Confidence 357999998863
No 294
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=98.22 E-value=4.7e-05 Score=66.57 Aligned_cols=155 Identities=13% Similarity=0.001 Sum_probs=80.3
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc-ccccc---cCCCC----CcceEEEcCccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP-EFRHF---IDGVE----GADSFSLNAHKW 73 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~-~~~~~---~~~~~----~~Ds~~~~~hK~ 73 (239)
+-+|+.+.-+|.||.+.+ +++|+++|++|++++++|.++.-....-. ..... ...+. .-=.++.|+.|.
T Consensus 166 ~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 245 (393)
T TIGR03538 166 CQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKR 245 (393)
T ss_pred ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhh
Confidence 345566778999999888 78889999999999999999874332100 00000 00110 011678899996
Q ss_pred CCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHh
Q 048438 74 FFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVS 151 (239)
Q Consensus 74 l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~ 151 (239)
++.| .-+|+++. .+..+...... ....+....++....++..+. .+-+++..+...+..+.+.+.|+
T Consensus 246 ~~~~GlRvG~~i~-~~~l~~~~~~~----------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 314 (393)
T TIGR03538 246 SNLPGLRSGFVAG-DAEILKAFLRY----------RTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILG 314 (393)
T ss_pred cCCcccceEEEec-CHHHHHHHHHH----------HHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 44676654 33333322110 000000111222222222222 23344555555666677777776
Q ss_pred CCCCeEEEcCCCeeEEEEEEc
Q 048438 152 GDKRFEVVFPCHFAVVCFRVS 172 (239)
Q Consensus 152 ~~~g~~~~~~~~~~iv~f~~~ 172 (239)
+. +.+..+...+-+.++++
T Consensus 315 ~~--~~~~~p~gg~f~~~~~~ 333 (393)
T TIGR03538 315 QV--LDLELPDAGFYLWPKVP 333 (393)
T ss_pred hh--CcccCCCeeEEEEEECC
Confidence 53 33333444455555554
No 295
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=98.22 E-value=2.6e-05 Score=67.11 Aligned_cols=141 Identities=19% Similarity=0.275 Sum_probs=89.1
Q ss_pred ecCCCCccccc-ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-----ccceEEE
Q 048438 11 TIGTTAITAVD-PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-----LDCCCLW 84 (239)
Q Consensus 11 t~gtt~~G~i~-pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-----~g~g~l~ 84 (239)
..-.+..|.+. +|.||+++.|++|-.+..|||---..+-.- +. -++ ++|+.-+|+||.++.| +|.|-+-
T Consensus 210 iTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~--rP--Gd~-G~DV~HlNLHKTF~iPHGGGGPG~GPvg 284 (496)
T COG1003 210 ITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLA--RP--GDM-GFDVVHLNLHKTFCIPHGGGGPGAGPVG 284 (496)
T ss_pred eccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccc--cc--ccc-ccceEEeecccccccCCCCCCCCCCcee
Confidence 33345578864 599999999999999999998532222111 10 112 5999999999999988 4566677
Q ss_pred eeCc--ccccccc---cCCCCccCCCCceecCCC---CCCh----HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 85 ATNP--EYLKNKA---TESKPVVDYKDWQITLSR---SFRS----LKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 85 ~~~~--~~l~~~~---~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
|+.. +|+-... .......++... -..++ .++. ...|..++.+|.+|+++.-+...-+|+|+..+|+.
T Consensus 285 Vk~~L~pfLP~p~~~~~~~~y~~~~~~~-~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~ 363 (496)
T COG1003 285 VKAHLAPFLPGPVVYHDVGEYRLDYDGK-KSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG 363 (496)
T ss_pred hHhhccccCCCCcccCCCccccccCCCC-ccceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh
Confidence 6531 2332210 000001111100 00111 1222 45677889999999999999999999999999985
Q ss_pred CCCeEEE
Q 048438 153 DKRFEVV 159 (239)
Q Consensus 153 ~~g~~~~ 159 (239)
.+++.
T Consensus 364 --~y~~~ 368 (496)
T COG1003 364 --YYPVP 368 (496)
T ss_pred --cCccc
Confidence 45554
No 296
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=98.22 E-value=6.2e-05 Score=66.62 Aligned_cols=195 Identities=11% Similarity=-0.029 Sum_probs=100.4
Q ss_pred cEEEEEecC-CCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~g-tt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+.+|++--. ....|.+.| +++|.++|++||+++++|.+|.+.--...-+.....++. .|.++ +-|.+++- .
T Consensus 207 iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PDiv~--~gK~l~gG~~ 283 (429)
T PRK06173 207 IAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVV-PDIMC--IGKALTGGYL 283 (429)
T ss_pred EEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCC-CCEEE--eehhhhCCcc
Confidence 445555543 344465533 789999999999999999999542111111000123443 88887 58987543 2
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
.++.++.++ +............+.. ..++ .+.+.......++++.+-.+ +..++..++.++|.+.|++..++..
T Consensus 284 p~~a~~~~~-~i~~~~~~~~~~~~~~-~~T~-~g~p~~~aaa~a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~~~~~ 357 (429)
T PRK06173 284 TLSATITTE-AIAQTICSGEAKCFMH-GPTF-MANPLACAIAAESIRLLLES---PWQQNIQRIEAQLKQELAPAAEFDS 357 (429)
T ss_pred ccceEEecH-HHHHHHhcCCCCcccc-CCCC-CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 355555543 2221111000000000 0011 12222333344445554333 3355666888899998875433333
Q ss_pred EcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 159 VFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 159 ~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
+.+ ....|+.+.+.... ....+.+.|.++|.+... .| .++|+.+---.|+
T Consensus 358 v~~vRg~Gl~~~iel~~~~-----------------------~~~~i~~~l~e~Gi~v~~----~g-~~l~~~Ppl~it~ 409 (429)
T PRK06173 358 VAEVRVLGAIGVVEMKEPV-----------------------NMATLQPRFVEHGIWVRP----FG-KLVYIMPPFIISP 409 (429)
T ss_pred eeeeeccceEEEEEeCCcc-----------------------cHHHHHHHHHHCCeEEEe----cC-CEEEEeCCccCCH
Confidence 322 23456667775421 123667778888765432 23 4889886544443
No 297
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=98.21 E-value=4.8e-05 Score=67.80 Aligned_cols=189 Identities=12% Similarity=0.117 Sum_probs=101.2
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCC-CcceEEEcCcccCCCccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GADSFSLNAHKWFFATLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~-~~Ds~~~~~hK~l~~P~g 79 (239)
..+|++--...+.|.+-| +++|.++|++||+.+++|.+|.+.-....-+.....++. ..|.+++ -|.+++
T Consensus 252 iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~--gK~lg~--- 326 (464)
T TIGR00699 252 VAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTF--SKKFQT--- 326 (464)
T ss_pred EEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEe--hhhhcc---
Confidence 556676666677788888 999999999999999999998653221111111122332 4898766 688742
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeE-
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFE- 157 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~- 157 (239)
.|++ +.. +.+..... .. . .+-..+.+.......++++.+-.+ +..++..++.++|.+.|+++. .+.
T Consensus 327 gG~~-~~~-~~~~~~~~----~~--~-~~T~~gnp~~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~ 394 (464)
T TIGR00699 327 AGYF-FHD-PAFRPNKP----YR--Q-FNTWMGDPSRALILREIIQEIKRK---DLLENVAHVGDYLYTGLEDLQKKYPE 394 (464)
T ss_pred CCcc-ccc-hhccCCCC----cc--c-ccCCCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2333 222 11111000 00 0 000111122222233345544333 344455566777777776531 122
Q ss_pred EEcC----CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 158 VVFP----CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 158 ~~~~----~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
++.. ....++.+.++. ......+.+.+.++|.+... .|..+||+++.-.
T Consensus 395 ~i~~vRg~G~Glm~gie~~~-----------------------~~~~~~i~~~~~~~Gvl~~~----~g~~~ir~~Ppl~ 447 (464)
T TIGR00699 395 FIQNLRGKGRGTFIAWDTPD-----------------------EAKRDKLLKKARNNGVNIGG----CGVKAIRLRPMLV 447 (464)
T ss_pred ceeeecccCeEEEEEEecCC-----------------------HHHHHHHHHHHHHCCcEEec----CCCCeEEEeCCCC
Confidence 1222 334566666632 12345778888888866432 2557899997666
Q ss_pred CCCc
Q 048438 234 LTEE 237 (239)
Q Consensus 234 ~t~~ 237 (239)
.|++
T Consensus 448 it~~ 451 (464)
T TIGR00699 448 FQKH 451 (464)
T ss_pred CCHH
Confidence 5554
No 298
>PRK07036 hypothetical protein; Provisional
Probab=98.18 E-value=7.9e-05 Score=66.69 Aligned_cols=202 Identities=9% Similarity=0.015 Sum_probs=103.3
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccc-cCCCCCcceEEEcCcccCCCcc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~-~~~~~~~Ds~~~~~hK~l~~P~ 78 (239)
.+.+|++--...+.|.+.| +++|.++|++||+.+++|..+.+.--...-+... ..++. .|.+++ -|.+++-+
T Consensus 220 ~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~-PDivt~--gK~l~gG~ 296 (466)
T PRK07036 220 NIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQ-PDIITF--AKGLTSGY 296 (466)
T ss_pred ceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCC-CCEEEE--ccccccCc
Confidence 4567777766677788888 9999999999999999999986532211111100 12444 898876 68876532
Q ss_pred -cceEEEeeCcccccccccC--CCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 79 -DCCCLWATNPEYLKNKATE--SKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 79 -g~g~l~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
.+|.+..++ +........ ....+. ...++ .+.+.......+.|+.+..+ +..++..++.++|.+.|+++..
T Consensus 297 ~Pi~av~~~~-~i~~~~~~~~~~~~~~~-~~~T~-~gnpl~~aaa~a~Le~i~~~---~l~~~~~~~g~~l~~~L~~l~~ 370 (466)
T PRK07036 297 QPLGAVIISE-RLLDVISGPNAKGNVFT-HGFTY-SGHPVACAAALKNIEIMERE---GLCEHVREVGPYFEERLASLRE 370 (466)
T ss_pred cccEEEEEcH-HHHHHHhcccCcCcccc-cCCCC-CCCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhcc
Confidence 366677643 332221100 000000 00111 12222223333344544333 4555666888888888876422
Q ss_pred eEEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438 156 FEVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG 231 (239)
Q Consensus 156 ~~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~ 231 (239)
..++... .-.++.+.+...... . ........+...+.+.+.++|.+... .+ ..+|+++-
T Consensus 371 ~~~v~~vrG~Gl~~~ve~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~Gvl~~~----~~-~~~~l~Pp 431 (466)
T PRK07036 371 LPLVGDVRGDHLMACVECVADKGS---------K---ALLPEDIAIGQRIDRHCQERGLLVRP----LE-HLCVLSPP 431 (466)
T ss_pred CCCEEEEEeeceEEEEEEccCccc---------c---CCCCchhHHHHHHHHHHHHCCcEEee----cC-CEEEEeCC
Confidence 2222221 123555555321100 0 00000123445677788888866532 12 45776643
No 299
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=98.17 E-value=0.00013 Score=62.94 Aligned_cols=189 Identities=11% Similarity=0.008 Sum_probs=104.2
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCccccc---ccCCCCCcceEEEcCcccCCCc-cc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH---FIDGVEGADSFSLNAHKWFFAT-LD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~---~~~~~~~~Ds~~~~~hK~l~~P-~g 79 (239)
.+.+++++.-+|.||.+.+-++|.++++++++ +++|.++.-...... ... .....+ -=+++.|+.|.++.| .-
T Consensus 148 ~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~~~~-~vi~i~S~SK~~~l~GlR 224 (360)
T PRK07392 148 PNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDA-EQSLIPCLAEYP-NLIILRSLTKFYSLPGLR 224 (360)
T ss_pred CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCcc-ccchHHHhhcCC-CEEEEEechhhhcCCchh
Confidence 34567777789999999999999999999985 777999875432110 001 111111 115667999998744 44
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRH-FLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~-~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
+|+++. .++.+....... ..+. ...+..+.+...+....+.+ ..+...+..+++.+.|++++|+.+
T Consensus 225 iG~~v~-~~~~~~~~~~~~------~~~~------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 291 (360)
T PRK07392 225 LGYAIA-HPDRLQRWQQWR------DPWP------VNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLASLPGLTP 291 (360)
T ss_pred eeeeeC-CHHHHHHHHhhC------CCCC------CCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 777765 333333221100 0011 11233333333332222222 233445667778888988888876
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEEC--CEeEEEEEecCCC
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVLG--GIYAIRFATGATL 234 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~~--g~~~lR~~~~~~~ 234 (239)
. +...+-+.++++.. ..++.+++.+ .|..+....... +..++|+++..+.
T Consensus 292 ~-~~~~~fl~~~~~~~-------------------------~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~~~ 344 (360)
T PRK07392 292 L-PSAANFLLVQSQGS-------------------------ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRTEA 344 (360)
T ss_pred C-CCCCCEEEEEcCCC-------------------------HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCCHH
Confidence 4 44455554444321 1245556544 455555444332 3469999988753
No 300
>PRK05965 hypothetical protein; Provisional
Probab=98.17 E-value=9.4e-05 Score=66.09 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=106.7
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
...+|++--.....|.+.| +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++ -|.|++-+
T Consensus 215 ~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gKgl~gG~~ 291 (459)
T PRK05965 215 NVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVV-PDLMTV--AKGLTSGYV 291 (459)
T ss_pred ceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCC-CCeEEe--chhhccCCc
Confidence 3456666555555666554 789999999999999999998764222211111123454 999987 58876542
Q ss_pred cceEEEeeCcccccccccCC--CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 79 DCCCLWATNPEYLKNKATES--KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
..|.+++++ +......... ...+. ...++ .+.+.......+.|+.+..+ +..++..++.++|.+.|+++...
T Consensus 292 Pi~av~~~~-~i~~~~~~~~~~~~~~~-h~~T~-~gnpl~~Aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~ 365 (459)
T PRK05965 292 PMGAVLMSD-HVYQGIADGAGAAAPVG-HGYTY-SAHPVSAAVGLEVLRLYHEG---GLLANGQKAGPRFAAGLDALRAH 365 (459)
T ss_pred ceeEEEEcH-HHHHHHhcccccccccc-ccCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHhhccC
Confidence 467777654 3322111100 00000 00111 12222223333445554333 34455668888888888775322
Q ss_pred EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
.++.+. .--++.+.+...... . ...+....+..++.+.+.++|.++.. .|..++|+++---.
T Consensus 366 ~~v~~vrG~Gl~~gie~~~~~~~---------~---~~~~~~~~~~~~i~~~~~~~Gll~~~----~g~~~i~~~PpL~i 429 (459)
T PRK05965 366 PLVGDVRGRGLLGALELVADKAT---------K---TPFDAALDPADRIFDRAYANGLVFRA----FGDGVLGFAPALCC 429 (459)
T ss_pred CCEEEEeecceEEEEEEeccccc---------c---CCCCchhHHHHHHHHHHHhCCeEEEe----cCCcEEEEECCCcC
Confidence 222221 122445555321100 0 00000023445777788888876532 25567898855444
Q ss_pred CC
Q 048438 235 TE 236 (239)
Q Consensus 235 t~ 236 (239)
|+
T Consensus 430 t~ 431 (459)
T PRK05965 430 TE 431 (459)
T ss_pred CH
Confidence 43
No 301
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=98.16 E-value=3.1e-06 Score=72.50 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=54.9
Q ss_pred EEEEecCCCCccc--ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 7 FLCATIGTTAITA--VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 7 ~vv~t~gtt~~G~--i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
++.-++.++. |. -.++++++++||++|++++||.|-+.-.-.-+..+..++ .++|.+++|++|.|++|. +|++.
T Consensus 159 ~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la--~GaDLV~~SgdKllgGPq-aGii~ 234 (395)
T COG1921 159 LLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALA--LGADLVSFSGDKLLGGPQ-AGIIV 234 (395)
T ss_pred eEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHh--cCCCEEEEecchhcCCCc-cceEe
Confidence 3344444433 43 346788999999999999999987643221222222232 259999999999999998 67666
Q ss_pred eeCccccccc
Q 048438 85 ATNPEYLKNK 94 (239)
Q Consensus 85 ~~~~~~l~~~ 94 (239)
- +.+++...
T Consensus 235 G-kKelI~~l 243 (395)
T COG1921 235 G-KKELIEKL 243 (395)
T ss_pred c-hHHHHHHH
Confidence 5 44565433
No 302
>PRK06062 hypothetical protein; Provisional
Probab=98.16 E-value=0.00019 Score=63.93 Aligned_cols=208 Identities=11% Similarity=-0.030 Sum_probs=103.4
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
.+.+|++--...+-|.+.| +++|.++|++||+.+++|.+|.+.--....+.....++. .|.+++ -|.+++-+
T Consensus 214 ~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~-PDi~t~--gK~lggG~~ 290 (451)
T PRK06062 214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVV-PDLITF--AKGVNSGYV 290 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCC-CCeeee--chhhhcCCc
Confidence 3456666666667788888 999999999999999999999863221111111123554 897765 79987632
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHH-HHHHHHHhCCC-Ce
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMA-RLFERLVSGDK-RF 156 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la-~~l~~~l~~~~-g~ 156 (239)
..|.++.++ +........ .+ ....++ .+.+.......++|+.+..+. ..++..++. +++.+.|+++. .+
T Consensus 291 Pigav~~~~-~i~~~~~~~---~~-~~~~T~-~gnpl~~Aaa~a~L~~l~~~~---l~~~~~~~G~~~l~~~L~~l~~~~ 361 (451)
T PRK06062 291 PLGGVAISE-AIAATFADR---PY-PGGLTY-SGHPLACAAAVATINAMEEEG---IVENAARIGAEVLGPGLRELAERH 361 (451)
T ss_pred CcEEEEEcH-HHHHHhccC---CC-CCCCCC-CCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356666654 333222100 00 000111 122222233334455543333 344444665 46666665431 11
Q ss_pred EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
.++... .--+..+.+...... ................+.+.|.++|.+... . ...+|+++....
T Consensus 362 ~~v~~vrG~Gl~~gve~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~---~--~~~lrl~ppl~~ 427 (451)
T PRK06062 362 PSVGEVRGLGVFWALELVADRET---------REPLAPYGASSAAMAAVKAACKERGLLPFV---N--GNRIHVVPPCTV 427 (451)
T ss_pred CcEEeEeccccEEEEEEcccccc---------cCCCcccchhhHHHHHHHHHHHHCCcEEee---c--CCEEEEECCccC
Confidence 111111 122445554321100 000000000123445778888888876432 1 247898865555
Q ss_pred CCc
Q 048438 235 TEE 237 (239)
Q Consensus 235 t~~ 237 (239)
|++
T Consensus 428 t~~ 430 (451)
T PRK06062 428 TED 430 (451)
T ss_pred CHH
Confidence 544
No 303
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=98.16 E-value=0.00011 Score=65.73 Aligned_cols=199 Identities=10% Similarity=0.040 Sum_probs=103.7
Q ss_pred CccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccccc---C-----CC--CCcceEEEc
Q 048438 3 LIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI---D-----GV--EGADSFSLN 69 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~---~-----~~--~~~Ds~~~~ 69 (239)
..+-+|+++.-+|.||.+.+ +++|.++|++|++++++|.+++.....-+.+...+ . +. ..-=.+..+
T Consensus 190 ~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S 269 (468)
T PLN02450 190 LKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYS 269 (468)
T ss_pred CCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEe
Confidence 35666777778899999877 55678888999999999999875322111111101 0 00 001145779
Q ss_pred CcccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-----HHHHHHHHHHHHHH
Q 048438 70 AHKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-----ENLRHFLRSHVNMA 143 (239)
Q Consensus 70 ~hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----~g~~~~~~~~~~la 143 (239)
+.|.++.| .=+|+++..++......... ..+. ....+....+...+.. .-+++..++..+..
T Consensus 270 ~SK~~~l~GlRiG~li~~~~~l~~~~~~~-------~~~~-----~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr 337 (468)
T PLN02450 270 LSKDLGLPGFRVGAIYSNDEMVVSAATKM-------SSFG-----LVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQ 337 (468)
T ss_pred ccccCCCCCccEEEEEECCHHHHHHHHHH-------hhcC-----CCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 99988633 44777776432222211100 0000 0011222222222221 12445556666777
Q ss_pred HHHHHHHhCCCCeEEEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEEC
Q 048438 144 RLFERLVSGDKRFEVVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLG 221 (239)
Q Consensus 144 ~~l~~~l~~~~g~~~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~ 221 (239)
+.+.+.|++. |+++. +++.+ -+.++++..- .+.. . +....+.++|.++ |..+.+.....
T Consensus 338 ~~l~~~L~~~-gi~~~-~~~~g~flwi~l~~~~---------------~~~~-~-~~~~~l~~~ll~~~gV~v~PG~~f~ 398 (468)
T PLN02450 338 KKLVSGLEAA-GIKCL-KSNAGLFCWVDMRHLL---------------KSNT-F-EAEMELWKKIVYEVKLNISPGSSCH 398 (468)
T ss_pred HHHHHHHHHc-CCccc-CCCceEEEEEEchHhc---------------CcCC-c-hHHHHHHHHHHHhCCEEEeCccccC
Confidence 7888888886 77654 45555 4445553210 0000 0 0112455666554 55544433332
Q ss_pred --CEeEEEEEecC
Q 048438 222 --GIYAIRFATGA 232 (239)
Q Consensus 222 --g~~~lR~~~~~ 232 (239)
+..++|+++.+
T Consensus 399 ~~~~g~~Rl~f~~ 411 (468)
T PLN02450 399 CTEPGWFRVCFAN 411 (468)
T ss_pred CCCCCEEEEEecC
Confidence 35699999886
No 304
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=98.16 E-value=0.00011 Score=60.84 Aligned_cols=147 Identities=13% Similarity=0.053 Sum_probs=97.7
Q ss_pred CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-cccc
Q 048438 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-TLDC 80 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g~ 80 (239)
|-...+|+.+...-.||...++.+|...-+..|+++=.|=||+.|-+++- +..|. +|+.+++..|.+.+ +.|.
T Consensus 212 gDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~-----LHdWg-VDFACWCSYKYlnaGaGgI 285 (465)
T KOG3846|consen 212 GDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQ-----LHDWG-VDFACWCSYKYLNAGAGGI 285 (465)
T ss_pred CCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceE-----EeecC-CceEEEeeecccccCCCcc
Confidence 44456677777789999999999999777778999999999999988775 55664 99999999999965 6678
Q ss_pred eEEEeeCcccccccc---cCCCC-----------ccC--CCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHH
Q 048438 81 CCLWATNPEYLKNKA---TESKP-----------VVD--YKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNM 142 (239)
Q Consensus 81 g~l~~~~~~~l~~~~---~~~~~-----------~~~--~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~l 142 (239)
|.+++.+. ...... ..+.+ .++ .+..++..+.+ ....++..+|+.+..-.+.+...+..-|
T Consensus 286 gGlFvHek-h~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lL 364 (465)
T KOG3846|consen 286 GGLFVHEK-HTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLL 364 (465)
T ss_pred ceeeeehh-hhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhH
Confidence 88888432 111110 00000 000 00011111111 2235566667766666777888888899
Q ss_pred HHHHHHHHhCCCC
Q 048438 143 ARLFERLVSGDKR 155 (239)
Q Consensus 143 a~~l~~~l~~~~g 155 (239)
+.|+...++...|
T Consensus 365 TgYleyL~k~~~g 377 (465)
T KOG3846|consen 365 TGYLEYLLKASKG 377 (465)
T ss_pred HhHHHHHHHHhcc
Confidence 9999888876433
No 305
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=98.16 E-value=0.00019 Score=63.07 Aligned_cols=201 Identities=14% Similarity=0.064 Sum_probs=101.9
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCC---cceEEEcCcccCCCc-
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEG---ADSFSLNAHKWFFAT- 77 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~---~Ds~~~~~hK~l~~P- 77 (239)
|-+|+++.-+|.||.+.+ +++|+++|++||++++.|.+|+-....-.... .+..++. .-++..|+.|.++.|
T Consensus 177 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~-~~~~~~~~~~~vi~~~SfSK~~~~pG 255 (409)
T PRK07590 177 VDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPH-SIYEIEGARECAIEFRSFSKTAGFTG 255 (409)
T ss_pred ceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCc-chhhCCCcccceEEEecCccccCCcC
Confidence 445555666899999877 55677888999999999999874322111000 0111111 124567999998644
Q ss_pred ccceEEEeeCcccccccccCCCCccC--CCCceecCCCCCChHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 78 LDCCCLWATNPEYLKNKATESKPVVD--YKDWQITLSRSFRSLKLWFVIRNY---GMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~---g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
.-+|.++. .++.+............ ..............+...++...+ +.+-+++..++..+..+++.+.|++
T Consensus 256 lRiG~~i~-~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 334 (409)
T PRK07590 256 TRCAYTVV-PKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLES 334 (409)
T ss_pred ceeEEEEc-CHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33676665 33444311000000000 000000000001112222222222 2334455556666777888889988
Q ss_pred CCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEE--CCEeEEEEE
Q 048438 153 DKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVL--GGIYAIRFA 229 (239)
Q Consensus 153 ~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~--~g~~~lR~~ 229 (239)
. ++++..+...+.+.+++++.- + ...+.+.+.++ |.++...... .+..++|++
T Consensus 335 ~-~~~~~~~~g~~f~wi~~~~~~---------------------~--~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~ 390 (409)
T PRK07590 335 A-GFEVYGGVNAPYIWVKTPDGM---------------------S--SWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS 390 (409)
T ss_pred c-CCceecCCcceEEEEECCCCC---------------------C--HHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE
Confidence 6 777654445566666765421 0 11455556544 4444433322 245699999
Q ss_pred ec
Q 048438 230 TG 231 (239)
Q Consensus 230 ~~ 231 (239)
+.
T Consensus 391 ~~ 392 (409)
T PRK07590 391 AF 392 (409)
T ss_pred cc
Confidence 53
No 306
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=98.14 E-value=0.00019 Score=61.44 Aligned_cols=182 Identities=11% Similarity=0.053 Sum_probs=106.4
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEE
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLW 84 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~ 84 (239)
.+|+.+.-+|.||.+.+.+++.+++ ++++++++|.++.-.. ...........+ -=+++.++.|.++.| .-+|+++
T Consensus 140 ~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~-~vi~~~S~SK~~~l~GlRvG~~v 215 (335)
T PRK14808 140 DVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFH--GESYVDLLKKYE-NLAVIRTFSKAFSLAAQRIGYVV 215 (335)
T ss_pred CEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhc--CCchHHHHHhCC-CEEEEEechhhccCcccceEEEE
Confidence 4677888899999999999999999 5899999999986431 111111111111 124567999998744 3357766
Q ss_pred eeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCCCe
Q 048438 85 ATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHF 164 (239)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~~~ 164 (239)
. .++.+....... ..+.. +. ........+++ ..+-+.+..+...+..+++.+.|++. |+++. +++.
T Consensus 216 ~-~~~~~~~l~~~~------~~~~~--~~-~~q~a~~~~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g 281 (335)
T PRK14808 216 S-SEKFIDAYNRVR------LPFNV--SY-VSQMFAKVALD--HREIFEERTKFIVEERERMKSALREM-GYRIT-DSRG 281 (335)
T ss_pred e-CHHHHHHHHHhc------CCCCC--CH-HHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEC-CCCC
Confidence 5 334433221100 00110 00 11111122232 12334555556666677888889886 77765 5577
Q ss_pred eEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 165 AVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 165 ~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
+.+.+++++.. . ..+.++|.++|...... ..++|+++..+.
T Consensus 282 ~f~~~~l~~~~----------------------~--~~~~~~l~~~Gi~V~~~-----~~~~Risi~~~~ 322 (335)
T PRK14808 282 NFVFIFMEKEE----------------------K--ERLLEHLRAKNIAVRSF-----REGVRITIGKRE 322 (335)
T ss_pred eEEEEeCCCcc----------------------H--HHHHHHHHHCCeEEEEC-----CCCeEEecCCHH
Confidence 77777765321 1 25667787777665432 247999988764
No 307
>PRK08636 aspartate aminotransferase; Provisional
Probab=98.13 E-value=0.00026 Score=62.10 Aligned_cols=197 Identities=13% Similarity=0.064 Sum_probs=102.1
Q ss_pred ccEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccCCCC---CcceEEEcCcccCCCc
Q 048438 4 IPLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE---GADSFSLNAHKWFFAT 77 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~---~~Ds~~~~~hK~l~~P 77 (239)
.+.+++.+..+|.||.+.+. ++|+++|++|++++++|-+++-....-..... +..++ ..-.++.++.|.++.|
T Consensus 175 ~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~~~ 253 (403)
T PRK08636 175 KPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPS-ILEVEGAKDVAVESYTLSKSYNMA 253 (403)
T ss_pred CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCC-hhcCCCccccEEEEEecccccCCc
Confidence 45677777778999998775 67788899999999999998744321100000 11121 1223467999998544
Q ss_pred -ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 78 -LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 78 -~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
.-+|+++. +++.+...... .....+. .......+.. .+++. ..+-+++..+...+..+.+.+.|++. ++
T Consensus 254 GlRiG~iv~-~~~li~~~~~~----~~~~~~~--~~~~~q~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-~~ 323 (403)
T PRK08636 254 GWRVGFVVG-NKKLVGALKKI----KSWLDYG--MFTPIQVAAT-IALDG-DQSCVEEIRETYRKRRDVLIESFANA-GW 323 (403)
T ss_pred cceeeeeeC-CHHHHHHHHHH----HHHhccc--CChHHHHHHH-HHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 34666654 33333222100 0000000 0011111111 12221 22334445555567777788888875 67
Q ss_pred EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHh-cCcEEEEEEEE--CCEeEEEEEec
Q 048438 157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINA-SGKAYMTNVVL--GGIYAIRFATG 231 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~g~~~~~~~~~--~g~~~lR~~~~ 231 (239)
++..+.....+.+++++.... . + ...+.+.+.+ .|....+.... .+..++|+++.
T Consensus 324 ~~~~p~~g~~~~~~l~~~~~~-------------~-----~--~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~ 381 (403)
T PRK08636 324 ELQKPRASMFVWAKIPEPARH-------------L-----G--SLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI 381 (403)
T ss_pred cccCCCcceEEEEECCCccCC-------------C-----C--HHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec
Confidence 665444555666666532100 0 0 1245445443 45544443333 23579999986
No 308
>PRK07481 hypothetical protein; Provisional
Probab=98.12 E-value=0.00014 Score=64.85 Aligned_cols=141 Identities=11% Similarity=-0.025 Sum_probs=76.9
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
.+.+|++--.....|.+-| +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++ -|.+++-+
T Consensus 213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gKgl~gG~~ 289 (449)
T PRK07481 213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVK-PDIMCL--AKGITSGYV 289 (449)
T ss_pred cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCC-CCEEEE--eecccCCCc
Confidence 3556666666666777766 899999999999999999998754221111110123454 898887 68876532
Q ss_pred cceEEEeeCcccccccccCC--CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438 79 DCCCLWATNPEYLKNKATES--KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
..|.+++++ ++........ ...+. ...+ ..+.+.......++|+.+..+ +..++..++.++|.+.|+++
T Consensus 290 Pi~av~~~~-~i~~~~~~~~~~~~~~~-h~~T-~~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l 360 (449)
T PRK07481 290 PLGATMVNA-RIADAFEANADFGGAIM-HGYT-YSGHPVACAAALATLDIVVRE---DLPANAAKRGAYLLEGLQPL 360 (449)
T ss_pred CceEEEEcH-HHHHHHhccCccccccc-cCCC-CCCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH
Confidence 356677654 3322211100 00000 0001 112222223333445554433 34455567788888888664
No 309
>PLN00144 acetylornithine transaminase
Probab=98.11 E-value=0.00035 Score=60.97 Aligned_cols=188 Identities=13% Similarity=0.063 Sum_probs=95.3
Q ss_pred cEEEEEecCCCCcccc--cC--hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAV--DP--LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i--~p--l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+.+|++.-..+..|.+ ++ +++|.++|++||+++++|.+|++..-...-+.....++. .| ..++.|.+++-...
T Consensus 168 ~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~-PD--i~t~sK~l~~G~pi 244 (382)
T PLN00144 168 TAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVE-PD--IMTLAKPLAGGLPI 244 (382)
T ss_pred eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCC-CC--EEEecccccCCcce
Confidence 4455555444443443 33 889999999999999999998754221111110123443 77 55568998755557
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh----CCCCe
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVS----GDKRF 156 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~----~~~g~ 156 (239)
|+++.+. ++....... ....++ .+.+.......+.++.+....+.+++ .++.+++.+.|+ +.|.+
T Consensus 245 g~v~~~~-~~~~~~~~~------~~~~T~-~~~pl~~aaa~a~l~~i~~~~~~~~~---~~~g~~l~~~l~~~~~~~~~~ 313 (382)
T PLN00144 245 GAVLVTE-KVASAINPG------DHGSTF-AGGPLVCNAALAVLDKISKPGFLASV---AKKGEYLRELLRRKLGGNPHV 313 (382)
T ss_pred EEEEEcH-HHHhccCCC------CCCCCC-CCCHHHHHHHHHHHHHHhhchHHHHH---HHHHHHHHHHHHHHHhhCCCc
Confidence 7777643 333222110 000111 11222223333445665444444433 355555555544 33322
Q ss_pred EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
.-+.. .--++.+.+... ...+.+.+.++|..+.+. ....++|+++..-.|
T Consensus 314 ~~vrg-~G~~~~l~l~~~-------------------------~~~~~~~~~~~Gv~i~~~---~~~~~lrl~p~~~~~ 363 (382)
T PLN00144 314 KEVRG-VGLLVGIQLDVP-------------------------AGPLVDACRDSGLLVLTA---GKGDVVRLVPPLVIS 363 (382)
T ss_pred eeeec-CceEEEEEecCc-------------------------cHHHHHHHHHCCeEEeec---CCCCEEEEeCCCccC
Confidence 11111 223444444211 125667777788765542 113789999765444
No 310
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=98.11 E-value=0.0002 Score=63.34 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=99.3
Q ss_pred cEEEEEecCCCCccc-ccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITA-VDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~-i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
..+|++.-...+.|. +-| +++|.++|++||+++++|.+|.+.......+.....++ ..|.+ ++.|.+++-...
T Consensus 199 iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~-~pDiv--~~sK~l~~G~pi 275 (421)
T PRK06777 199 VAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDV-KPDLI--TMAKSLGGGMPI 275 (421)
T ss_pred eEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCC-CCCEE--eeehhhcCCCce
Confidence 455555555555665 344 89999999999999999999875322111011001233 37866 468988743446
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CCe
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KRF 156 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g~ 156 (239)
|.++.+ ++......... ...++ ++.+........+|+.+.. ++..++..++.+++.+.|+++ +.+
T Consensus 276 gav~~~-~~i~~~~~~~~------~~~T~-~~~p~~~aaa~a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i 344 (421)
T PRK06777 276 SAVVGR-AEVMDAPAPGG------LGGTY-AGNPLAVAAALAVLDVIAE---EKLCQRALILGAHLVEVLEKAKASCPAI 344 (421)
T ss_pred EEEEEc-HHHHhccCCCC------CCCCC-CcCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 767664 33332221100 00111 1222222333334444433 345556667888888888764 322
Q ss_pred EEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438 157 EVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG 231 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~ 231 (239)
.-+ .+.-.+..+.+..+.. ...+ .++...+.+.+.++|.+... .... ..++|+++-
T Consensus 345 ~~v-rg~G~~~~i~~~~~~~------------~~~~----~~~~~~l~~~~~~~Gv~i~~-~~~~-g~~lr~~pp 400 (421)
T PRK06777 345 VDI-RARGSMVAVEFNDPQT------------GKPS----PEFTRQYQRQALEEGLLLLS-CGVH-GNVIRFLYP 400 (421)
T ss_pred EEe-cCceEEEEEEEecCcc------------CCcc----HHHHHHHHHHHHhCCeEEee-cCCC-CCEEEEeCC
Confidence 222 2333444444432110 0001 23455677777777765433 2211 258999853
No 311
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=98.10 E-value=0.00014 Score=62.61 Aligned_cols=189 Identities=16% Similarity=0.106 Sum_probs=106.9
Q ss_pred EEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceE
Q 048438 7 FLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCC 82 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~ 82 (239)
+|++---.-+-|.+-| ++++.++|++||+.+++|..|.+---...-+.....++. .|.++. -|.|++-...|.
T Consensus 187 AvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~-PDI~tl--aK~LgGG~PigA 263 (404)
T COG4992 187 AVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVE-PDILTL--AKALGGGFPIGA 263 (404)
T ss_pred EEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCC-CCEEEe--eccccCCcccee
Confidence 4444444445666555 788999999999999999999864322221211133554 888875 588887777888
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~~~ 161 (239)
++.+ ..+........ + .+..+|.+.......++++.+..+++-+++ .++.++|.++|+++. .+.++.+
T Consensus 264 ~la~-~~~~~~~~~G~------H-gSTfGGNpLacAv~~a~l~~l~~e~ll~~v---~~~g~~~~~~L~~l~~~~~~v~~ 332 (404)
T COG4992 264 MLAT-EEIASAFTPGD------H-GSTFGGNPLACAVALAVLEVLLEEGLLENV---REKGEYLLQRLRELKRRYPLVKE 332 (404)
T ss_pred eEEc-hhhhhcCCCCc------c-cCCCCcCHHHHHHHHHHHHHHcchhHHHHH---HHHHHHHHHHHHHHhhcCCceee
Confidence 8876 33222211110 0 111233333333333456666666555544 488888888887752 2223333
Q ss_pred C--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 162 C--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 162 ~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
. .--++-..+.+.. ....+.+.+.++|.+... .+..++|+.+----|+
T Consensus 333 vRG~GLmiGiel~~~~-----------------------~a~~~~~~~~~~gvL~~~----a~~~ViR~~PpL~i~~ 382 (404)
T COG4992 333 VRGRGLMIGIELKEPY-----------------------RARDIVRALREEGVLVLP----AGPNVIRFLPPLVITE 382 (404)
T ss_pred eecceeEEEEEecCcc-----------------------cHHHHHHHHHHCCeEEec----CCCCeEEecCCccCCH
Confidence 2 1224555554420 123666777778865443 2556999986544433
No 312
>PRK08297 L-lysine aminotransferase; Provisional
Probab=98.10 E-value=0.0002 Score=63.68 Aligned_cols=192 Identities=11% Similarity=0.039 Sum_probs=99.1
Q ss_pred ccEEEEEecCCCCcccc----cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAV----DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i----~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|++.-...+.|.+ .-+++|.++|++||+++++|..|.+.--...-+.....++. .|.+++ -|.+ |.
T Consensus 225 ~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gK~l--~~- 298 (443)
T PRK08297 225 DIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVR-PDIVAF--GKKT--QV- 298 (443)
T ss_pred cEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCC-CCEEEe--cccc--cc-
Confidence 45666666555666765 44899999999999999999998653121111110122443 898875 7886 32
Q ss_pred ceEEEeeCcc-ccc-ccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----
Q 048438 80 CCCLWATNPE-YLK-NKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD---- 153 (239)
Q Consensus 80 ~g~l~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---- 153 (239)
|.+++++.- .+. ...... . ....++ ++.+........+++.+..+ +..++..++.+++.++|+++
T Consensus 299 -~a~l~~~~i~~~~~~~~~~~--~--~~~~T~-~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~ 369 (443)
T PRK08297 299 -CGIMAGRRVDEVEDNVFAVS--S--RINSTW-GGNLVDMVRARRILEVIEED---GLVENAARQGEYLLARLEELAAEF 369 (443)
T ss_pred -cceecchHHHHhhhhhccCc--c--ccCCCC-CccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHC
Confidence 333343320 011 000000 0 000011 11111112222334444333 34555667778887777653
Q ss_pred CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
+.+-.-......++.+.+.+ ......+.+.+.++|.++.. .+...+|+++.-.
T Consensus 370 ~~~~~~vrg~G~~~~i~~~~-----------------------~~~~~~~~~~l~~~Gvl~~~----~~~~~lr~~P~l~ 422 (443)
T PRK08297 370 PAVVSNVRGRGLMCAFDLPT-----------------------TADRDEVIRRLWEEGVLVLP----CGERSIRFRPALT 422 (443)
T ss_pred CCcceeeeccceEEEEEecC-----------------------HHHHHHHHHHHHHCCEEEec----CCCCeEEEECCcc
Confidence 22210001234566677643 12334677788877766532 2446789987766
Q ss_pred CCCc
Q 048438 234 LTEE 237 (239)
Q Consensus 234 ~t~~ 237 (239)
.|++
T Consensus 423 ~t~~ 426 (443)
T PRK08297 423 VTTE 426 (443)
T ss_pred CCHH
Confidence 6554
No 313
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=98.10 E-value=7.7e-05 Score=66.04 Aligned_cols=181 Identities=14% Similarity=0.026 Sum_probs=92.9
Q ss_pred ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cceEEEeeCcccccccccCC
Q 048438 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCCCLWATNPEYLKNKATES 98 (239)
Q Consensus 20 i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g~l~~~~~~~l~~~~~~~ 98 (239)
..++++|.++|++||+.+++|.+|.+.-....-+.....++. .|.++ .-|.+.+-. .++.++.+ ++.........
T Consensus 228 ~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~-pDi~~--~gK~l~gG~~p~~a~~~~-~~~~~~~~~~~ 303 (427)
T TIGR00508 228 PTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVV-PDILC--VGKALTGGYMTLSATVTT-DKVAQTISSGE 303 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCC-CCEEE--echhhhcCcccceEEEEc-HHHHHHHhcCC
Confidence 467999999999999999999998542111111111123443 88877 489875432 34445543 23222111100
Q ss_pred CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC--CCeeEEEEEEcCCCc
Q 048438 99 KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP--CHFAVVCFRVSPLPV 176 (239)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~--~~~~iv~f~~~~~~~ 176 (239)
.... ....++ .+.+.......++++.+..+ +..++..++.++|.+.|+++.....+.. ....|+.+.+..+.
T Consensus 304 ~~~~-~~~~T~-~g~p~~~aaa~a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~- 377 (427)
T TIGR00508 304 AGCF-MHGPTF-MGNPLACAVAEASLAILLEG---EWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV- 377 (427)
T ss_pred CCcc-ccCCCC-CcCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc-
Confidence 0000 000011 12223333334445544333 3456667888999998877522111211 12456666664321
Q ss_pred chhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 177 LMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
....+.++|.++|.+. ... + ..+|+++.-..|++
T Consensus 378 ----------------------~~~~~~~~l~~~Gv~~-~~~---~-~~l~~~ppl~~t~~ 411 (427)
T TIGR00508 378 ----------------------NVEELQKKFVEQGVWI-RPF---G-KLIYVMPPYIITTE 411 (427)
T ss_pred ----------------------CHHHHHHHHHHCCeEE-Eec---C-CEEEEECCCCCCHH
Confidence 0135677788787554 321 2 36898866555544
No 314
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=98.09 E-value=9.9e-05 Score=63.91 Aligned_cols=183 Identities=14% Similarity=0.041 Sum_probs=100.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccC-cccccccCCCCCcc-eEEEcCcccCCCc-ccce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIF-PEFRHFIDGVEGAD-SFSLNAHKWFFAT-LDCC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~-~~~~~~~~~~~~~D-s~~~~~hK~l~~P-~g~g 81 (239)
+-+|+++.-.|.+|.+.+.+++.++++.+++++++|.+|+...... ......... .-+ +++.++.|.++.| .-+|
T Consensus 161 ~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~g~~GlRiG 238 (368)
T PRK03317 161 PDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPE--YPRLVVSRTMSKAFAFAGGRLG 238 (368)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHh--CCCEEEEEechhhhccchhhhh
Confidence 3355566667999999999999999999999999999998532111 000001111 123 4556999998755 2245
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+++. +++.+....... ..+. ..++....+...+. .+.+.+.+++..+..+++.+.|++. |+++.
T Consensus 239 ~~~~-~~~~~~~l~~~~------~~~~------~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~- 303 (368)
T PRK03317 239 YLAA-APAVVDALRLVR------LPYH------LSAVTQAAARAALRHADELLASVAALRAERDRVVAWLREL-GLRVA- 303 (368)
T ss_pred hhhC-CHHHHHHHHhcC------CCCC------CCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHC-CCEeC-
Confidence 5554 333333221100 0011 11222222222221 2344455566667777888888875 77754
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
++..+.+.|.-.+ . ...+.+.|.++|..+. . .....++|++++.
T Consensus 304 ~~~~~~~~~~~~~-~------------------------~~~~~~~l~~~Gv~v~-~--~~~~~~iRi~~~~ 347 (368)
T PRK03317 304 PSDANFVLFGRFA-D------------------------RHAVWQGLLDRGVLIR-D--VGIPGWLRVTIGT 347 (368)
T ss_pred CCCCcEEEEeccC-C------------------------HHHHHHHHHHCCEEEE-e--CCCCCeEEEecCC
Confidence 4556655442111 1 1256667777765543 2 2224689999763
No 315
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=98.09 E-value=0.00029 Score=60.14 Aligned_cols=177 Identities=13% Similarity=0.080 Sum_probs=94.0
Q ss_pred EEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCc-c-eEEEcCcccCCCc-ccc
Q 048438 7 FLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGA-D-SFSLNAHKWFFAT-LDC 80 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~-D-s~~~~~hK~l~~P-~g~ 80 (239)
+++.+.-+|.||.+.+. .+|+++|+++|+++++|.++.... +.+. ...+..- . .++.++.|.++.| .-+
T Consensus 127 ~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~-~~~s----~~~~~~~~~vi~~~SfSK~~gl~GlRi 201 (330)
T PRK05664 127 VLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT-PQHS----LAACAHRPGLIVLRSFGKFFGLAGARL 201 (330)
T ss_pred EEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC-Cccc----ccccccCCCEEEEeeccccccCCCcce
Confidence 35555667999998885 455566788999999999985332 1111 1111111 2 5688999998744 335
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~ 159 (239)
|.++. .++++....... ..+. ........+...+. .+-.++..++..+..+++.+.|++. +++..
T Consensus 202 G~~v~-~~~l~~~~~~~~------~~~~------~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~ 267 (330)
T PRK05664 202 GFVLA-EPALLRALAELL------GPWT------VSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRRH-GLTPA 267 (330)
T ss_pred EEEEe-CHHHHHHHHHhc------CCCC------CCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 66665 334433322100 0011 11121122222221 1223444555666778888899876 65421
Q ss_pred cCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438 160 FPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 160 ~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
....+.+.++.+ + ...+.+.|.++|..... .....++|+++..
T Consensus 268 -~~~~~f~~~~~~--~------------------------~~~~~~~l~~~gi~v~~---f~~~~~iRis~~~ 310 (330)
T PRK05664 268 -GGCALFQWVRTE--D------------------------AAALHEFLARRGILTRL---FEQPASLRFGLPA 310 (330)
T ss_pred -CCcceEEEEecC--C------------------------HHHHHHHHHHCCeEEEE---CCCCCeEEEECCC
Confidence 112233333332 1 12556667777766543 2234689999874
No 316
>PRK08354 putative aminotransferase; Provisional
Probab=98.07 E-value=0.00019 Score=60.72 Aligned_cols=73 Identities=11% Similarity=-0.054 Sum_probs=48.6
Q ss_pred EEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438 7 FLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC 82 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~ 82 (239)
+++.+.-+|.||.+.+ +++|.++|+++|+|+++|.+++.....-. . .. ..--.++.++.|.++.| .-+|.
T Consensus 120 ~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~---~-~~--~~~vi~~~S~SK~~~l~GlRiG~ 193 (311)
T PRK08354 120 VVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE---S-PE--GENIIKLRTFTKSYGLPGIRVGY 193 (311)
T ss_pred EEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc---c-cC--CCcEEEEeccHhhcCCccceeee
Confidence 4666677899999877 56667778899999999999965432110 0 11 11235677999998755 23566
Q ss_pred EEe
Q 048438 83 LWA 85 (239)
Q Consensus 83 l~~ 85 (239)
++.
T Consensus 194 ~v~ 196 (311)
T PRK08354 194 VKG 196 (311)
T ss_pred eee
Confidence 554
No 317
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=98.06 E-value=0.00017 Score=63.44 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=48.8
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
+.+++++.-+|.||.+.+ +++|+++|++|++++++|.+|+-..-... +.........-=++..|+.|.+..-.-+|
T Consensus 180 ~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~-~~~~~~~~~~~vI~~~SfSK~~~pGlRiG 258 (416)
T PRK09440 180 TGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGII-FSEATPLWNPNIILCMSLSKLGLPGVRCG 258 (416)
T ss_pred ceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcc-hhhcCccccCCeEEEecccccCCCcceEE
Confidence 356667777899999877 67788889999999999999963211000 00000000101145679999733333366
Q ss_pred EEEe
Q 048438 82 CLWA 85 (239)
Q Consensus 82 ~l~~ 85 (239)
+++.
T Consensus 259 ~~i~ 262 (416)
T PRK09440 259 IVIA 262 (416)
T ss_pred EEeC
Confidence 6554
No 318
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=98.06 E-value=9.7e-05 Score=65.37 Aligned_cols=178 Identities=10% Similarity=-0.021 Sum_probs=90.3
Q ss_pred ChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEEeeCcccccccccCCCC
Q 048438 22 PLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWATNPEYLKNKATESKP 100 (239)
Q Consensus 22 pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~ 100 (239)
.+++|.++|++||+++++|.+|.+.--...-+.....++. .|.++ +-|.+++- ..+|+++.++ +...........
T Consensus 227 ~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~-PDi~t--~gK~l~gG~~p~~av~~~~-~i~~~~~~~~~~ 302 (428)
T PRK07986 227 WLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIA-PDILC--LGKALTGGTMTLSATLTTR-EVAETISNGEAG 302 (428)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCC-CCEEE--echhhhCCcccCcchhchH-HHHHHhhcCCCC
Confidence 3899999999999999999998553111111110123443 78886 57887543 2344455433 222211110000
Q ss_pred ccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcCC--CeeEEEEEEcCCCcch
Q 048438 101 VVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPC--HFAVVCFRVSPLPVLM 178 (239)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~~--~~~iv~f~~~~~~~~~ 178 (239)
.+ ....++. +.+........+++.+..+ +..++..++.++|.+.|+++.....+.+. ...++.+.+..+.
T Consensus 303 ~~-~~~~T~~-g~p~~~aaa~a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~--- 374 (428)
T PRK07986 303 CF-MHGPTFM-GNPLACAVANASLSLLESG---DWQQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPV--- 374 (428)
T ss_pred cc-ccCCCCC-cCHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcc---
Confidence 00 0001111 2222333344455555333 34556668888888888764222222221 1235555554321
Q ss_pred hhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 179 DKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
....+.+.+.++|.+... .| .++|+++---.|+
T Consensus 375 --------------------~~~~~~~~l~~~Gl~~~~----~g-~~i~~~Ppl~it~ 407 (428)
T PRK07986 375 --------------------NMAALQRFFVEQGVWIRP----FG-KLIYLMPPYIILP 407 (428)
T ss_pred --------------------cHHHHHHHHHHCCcEEEe----cC-CEEEEeCCCCCCH
Confidence 123677778888876432 13 4789875544443
No 319
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=98.06 E-value=0.00022 Score=63.08 Aligned_cols=200 Identities=12% Similarity=0.007 Sum_probs=99.8
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+.+|++.-...+.|.+.| +++|.++|++||+++++|.+|.+.-....-+.....++ ..|.++ +.|.+++-...
T Consensus 199 iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv-~pDi~t--lsK~l~~G~pi 275 (425)
T PRK07495 199 VAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEV-AADLTT--MAKGLAGGFPL 275 (425)
T ss_pred eEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCC-CCCEEe--ehhhhcCCccc
Confidence 455665555555675543 89999999999999999999875322111111011233 267655 47988754556
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~ 159 (239)
|.+..++ ++....... . ...++ .+.+.......++++.+..++ ..++..++.+++.++|+++. .+..+
T Consensus 276 gav~~~~-~i~~~~~~~---~---~~~T~-~~~pl~~aaa~a~l~~l~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~i 344 (425)
T PRK07495 276 AAVTGRA-EIMDAPGPG---G---LGGTY-GGNPLGIAAAHAVLDVIEEED---LCERANQLGNRLKQRLASLRETVPEI 344 (425)
T ss_pred eEEEEcH-HHHhccCCC---C---cCCCC-CCCHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 7776643 333222110 0 00111 122222233334555554433 34445567777777775431 11111
Q ss_pred cC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 160 FP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 160 ~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
.. ..--++.+.+.+.... .+ .......+.+.+.++|.+... ... +..++|+.+---.|+
T Consensus 345 ~~vrG~Gl~~~iel~~~~~~-------------~~---~~~~~~~~~~~~~~~Gvl~~~-~g~-~~~~~r~~Ppl~it~ 405 (425)
T PRK07495 345 ADIRGPGFMNAVEFNDADSG-------------LP---SAEFANRVRLKALEKGLILLT-CGV-HGNVIRFLAPITIQD 405 (425)
T ss_pred eeeecCceEEEEEEecCCCC-------------Cc---cHHHHHHHHHHHHHCCeEEee-cCC-CCCEEEEeCCCccCH
Confidence 11 1123455555432100 00 012345677788888866532 111 236789986544443
No 320
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=98.04 E-value=0.0006 Score=60.30 Aligned_cols=202 Identities=10% Similarity=-0.002 Sum_probs=105.2
Q ss_pred ccEEEEEecCCCCccccc-C---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVD-P---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~-p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|++.-.....|... | +++|.++|++||+++++|..+.+.......+.....++ ..|.+ ++.|.+++-..
T Consensus 198 ~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~-~pDi~--t~gK~l~~G~p 274 (421)
T PRK09792 198 QVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYAD-KPDLM--TMAKSLAGGMP 274 (421)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCC-CCcEE--EeehhhcCCCc
Confidence 456777776677778654 6 89999999999999999999876422211111001122 37854 55899876455
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~ 158 (239)
.|.++.+ +++....... . ...++ .+.+.......+.++.+..+ +.+++..++.+++.+.|+++. .+..
T Consensus 275 igav~~~-~~i~~~~~~~--~----~~~T~-~gnpl~~aaa~a~l~~l~~~---~~~~~~~~~g~~l~~~l~~l~~~~p~ 343 (421)
T PRK09792 275 LSGVVGN-ANIMDAPAPG--G----LGGTY-AGNPLAVAAAHAVLNIIDKE---SLCERANQLGQRLKNTLIDAKESVPA 343 (421)
T ss_pred eEEEEEc-HHHHhccCCC--C----cCCCC-CCCHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7776663 3333222110 0 00111 11122222223445555333 344555577777777765431 1111
Q ss_pred EcCC-C-eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 159 VFPC-H-FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 159 ~~~~-~-~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
+..+ . -.++.+.+++.... .+. ......+.+.+.++|.++.. . -....++|+.+..-.|+
T Consensus 344 v~~vrG~Gl~~~ie~~~~~~~-------------~~~---~~~~~~l~~~~~~~Gv~i~~-~-g~~~~~irl~P~l~i~~ 405 (421)
T PRK09792 344 IAAVRGLGSMIAAEFNDPQTG-------------EPS---AAIAQKIQQRALAQGLLLLT-C-GAYGNVIRFLYPLTIPD 405 (421)
T ss_pred cceecccceEEEEEecCCccC-------------Ccc---hHHHHHHHHHHHHCCcEEee-c-CCCCCEEEEeCCCcCCH
Confidence 2222 2 23555666432100 000 12345778888888876531 1 11247899986654444
Q ss_pred c
Q 048438 237 E 237 (239)
Q Consensus 237 ~ 237 (239)
+
T Consensus 406 ~ 406 (421)
T PRK09792 406 A 406 (421)
T ss_pred H
Confidence 3
No 321
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=98.03 E-value=0.00023 Score=63.56 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=99.8
Q ss_pred EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-cce
Q 048438 6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-DCC 81 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g~g 81 (239)
.+|++--...+.+.+-| +++|.++|++||+.+++|.+|.+.--...-+.....++. .|.++ .-|.+++-+ ..|
T Consensus 231 AavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~-PDiv~--~gKgl~gG~~P~~ 307 (459)
T PRK06082 231 GAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIE-PDILC--IGKGLGGGLVPIA 307 (459)
T ss_pred EEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCC-CCEEE--ecccccCCCCcce
Confidence 34444333333233445 899999999999999999998753221111111123553 89887 589987642 466
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~~ 160 (239)
.++.++ ++. ..... .. ...++ .+.+.......+.++.+..+ +..++..++.++|.+.|+++. ...++.
T Consensus 308 av~~~~-~i~-~~~~~---~~--~~~T~-~gnpl~~aaa~a~L~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~i~ 376 (459)
T PRK06082 308 AMITKD-KYN-TAAQI---SL--GHYTH-EKSPLGCAAALATIEVIEQE---GLLEKVKADSQFMRERLLEMKAKYPLIG 376 (459)
T ss_pred EEEEcH-HHH-hhccC---CC--CCCCC-CcCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhhCCCee
Confidence 676654 222 11100 00 00111 12222223333445544333 355566688888888887641 122222
Q ss_pred CC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 161 PC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 161 ~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
.. .-.++.+.+..... ......+....+...+.++|.++.. .+..++|+++---.|
T Consensus 377 ~vrG~Gl~~~ve~~~~~~---------------~~~~~~~~~~~~~~~~~~~Gvl~~~----~~~~~i~~~Ppl~it 434 (459)
T PRK06082 377 DVRGIGLLWGVELVTDRH---------------TKERAYDEAEAVLYRCLNNGLSFKV----SQGNVIQLSPPLIIT 434 (459)
T ss_pred eeeeccceeEEEEccCcc---------------ccCccHHHHHHHHHHHHhCCCEEEe----cCCCEEEEeCCCccC
Confidence 21 12345555532110 0000012344677778888876543 234678887543333
No 322
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=98.03 E-value=0.00019 Score=63.58 Aligned_cols=79 Identities=14% Similarity=-0.025 Sum_probs=51.7
Q ss_pred ccEEEEEecCCCCcccccChh----HHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDPLK----PLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~----~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|++--...+.|.+-|.+ +|.++|++||+.+++|.+|.+. -....+.....++. .|.++ +-|.+++-..
T Consensus 201 ~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~-PDi~~--~gK~lggG~p 276 (433)
T PRK00615 201 RVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVK-PDITV--YGKILGGGLP 276 (433)
T ss_pred ceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCC-CCeEE--EcccccCCcc
Confidence 345666666667778888854 9999999999999999999543 11111110123443 88876 5898874333
Q ss_pred ceEEEee
Q 048438 80 CCCLWAT 86 (239)
Q Consensus 80 ~g~l~~~ 86 (239)
.|++..+
T Consensus 277 ~~av~~~ 283 (433)
T PRK00615 277 AAAVVAH 283 (433)
T ss_pred eeeeeec
Confidence 5666654
No 323
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=98.02 E-value=0.00022 Score=63.46 Aligned_cols=207 Identities=11% Similarity=-0.016 Sum_probs=105.0
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
..+|++.-.....|.+.| +++|.++|++||+++++|..+.+.--...-+.....++. .|.++ .-|.+++-...
T Consensus 207 iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~--~gK~l~~G~Pi 283 (442)
T TIGR00709 207 PAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIE-PDFVV--MSKAVGGGLPL 283 (442)
T ss_pred eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCC-CcEEE--EcccccCCccc
Confidence 345555555555566543 899999999999999999998754322221111123443 89888 47888765557
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~ 159 (239)
|.++.++ ++ ...... ....+ ..+.+.......++++.+..++ ..++..++.++|.+.|+++. ...++
T Consensus 284 gav~~~~-~~-~~~~~~------~~~~T-~~gnpla~aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~v 351 (442)
T TIGR00709 284 AVLLIAP-EF-DAWQPA------GHTGT-FRGNQLAMVTGTEALNYWKDDN---LAQNAQERGERITSFLDDMIKEHPCI 351 (442)
T ss_pred EEEEEch-HH-hccCCC------cCCCC-CCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7777754 32 211100 00011 1122222333334455444433 34455577788887776531 22222
Q ss_pred cCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 FPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
.+. .--++.+.+...... .+..............+...+.++|.+.. .... +..++|+.+.--.|++
T Consensus 352 ~~vrG~Gl~~~ie~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~-~~~~-~~~~l~~~Ppl~it~~ 420 (442)
T TIGR00709 352 GNVRGRGLMQGIMIVDERQS---------KDATGAYPRDCELAAAIQGACFENGLLLE-TGGR-EGEVFRLLCPITIDQE 420 (442)
T ss_pred eeeeccceEEEEEEccCccc---------ccccccCCcchHHHHHHHHHHHHCCeEEe-ecCC-CCCEEEEECCCCCCHH
Confidence 222 223555555321100 00000000001344567777887876543 2211 2468898866555544
No 324
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=98.01 E-value=0.00036 Score=60.64 Aligned_cols=184 Identities=11% Similarity=0.003 Sum_probs=99.1
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHH-HhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAK-QFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC 81 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~-~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g 81 (239)
.+-+|+++.-+|.||.+.+.+++.++++ .+++++++|.++.-.... .... .+.... -=.+..|+.|.++.| .-+|
T Consensus 168 ~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~-~~~~-~~~~~~-~~ivi~SfSK~~g~~GlRiG 244 (374)
T PRK02610 168 PVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQT-TLVG-ELAQHP-NWVILRTFSKAFRLAAHRVG 244 (374)
T ss_pred CceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCcc-chHH-HHhcCC-CEEEEEecchhccCccccee
Confidence 4556766677899999988877766653 248999999998643211 0000 011111 114578999998555 3366
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+++. ++..+....... ..+.. .++...++...++ .+.+.+.+++..+..+++.+.|++++++.+.
T Consensus 245 ~~v~-~~~l~~~l~~~~------~~~~~------~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~- 310 (374)
T PRK02610 245 YAIG-HPELIAVLEKVR------LPYNL------PSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQELPQLRVW- 310 (374)
T ss_pred eeec-CHHHHHHHHHhc------CCCCC------CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEeC-
Confidence 6654 333333221100 00110 1122222222222 2333444444455566777888877787753
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
+...+-+.++++... + ...+.+.|.++|..+.. +..++|+++..
T Consensus 311 p~~g~f~~~~l~~~~----------------~-------~~~~~~~l~~~gi~v~~-----~~~~lRls~~~ 354 (374)
T PRK02610 311 PSAANFLYLRLSQDA----------------A-------LAALHQALKAQGTLVRH-----TGGGLRITIGT 354 (374)
T ss_pred CCcceEEEEeCCCCC----------------C-------HHHHHHHHHHCCEEEEe-----CCCeEEEeCCC
Confidence 556666666665321 0 12455666666665432 34579999775
No 325
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=98.01 E-value=0.00045 Score=59.27 Aligned_cols=177 Identities=13% Similarity=0.041 Sum_probs=96.5
Q ss_pred EEEEecCCCCcccccChhHHHHH---HHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceE
Q 048438 7 FLCATIGTTAITAVDPLKPLCDV---AKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCC 82 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i---~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~ 82 (239)
+++.+.-+|.||.+.+.+++.++ |++++.++++|.++.-... .+...... .-+. =.+..++.|.++.| .=+|.
T Consensus 133 ~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~-~~s~~~~~-~~~~-vi~l~SfSK~~gl~GlRiGy 209 (339)
T PRK06959 133 HLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLP-AASLAAHT-DRPG-LVVLRSVGKFFGLAGVRAGF 209 (339)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCC-cccchhcc-CCCC-EEEEecChhhcCCcchheEE
Confidence 45566668999999887776665 5578999999999875421 11111111 1011 15677999998644 33566
Q ss_pred EEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 83 LWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 83 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
++. .++.+....... ..|. ...+....+...+... -.++..++..+..+++.+.|++. |+++.
T Consensus 210 ~v~-~~~li~~l~~~~------~~~~------vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-- 273 (339)
T PRK06959 210 VLA-APALLAALRDAL------GAWT------VSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH-GFAVH-- 273 (339)
T ss_pred Eec-CHHHHHHHHHhc------CCCC------CcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCcc--
Confidence 665 344443322100 0111 1122222233333222 23344555666778888999886 77654
Q ss_pred CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEec
Q 048438 162 CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATG 231 (239)
Q Consensus 162 ~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~ 231 (239)
+..+.+.+++++ ...+.+.|.++|..... .....++|+++.
T Consensus 274 ~~~~f~~~~~~~--------------------------~~~l~~~l~~~GI~vr~---~~~~~~lRisi~ 314 (339)
T PRK06959 274 ATPLFSWTDDPR--------------------------AAALHAALARRGIWTRY---FAPPPSVRFGLP 314 (339)
T ss_pred CcceEEEEeCCC--------------------------HHHHHHHHHhCCeEEEE---CCCCCeEEEECC
Confidence 223333333321 12567778778766432 233458999974
No 326
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=98.00 E-value=0.00011 Score=65.13 Aligned_cols=158 Identities=11% Similarity=0.010 Sum_probs=82.1
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
...+|++.....+.|.+-| +++|.++|++||+++++|.+|.+. .....+.....++ ..|.+ ++.|.+++-..
T Consensus 197 ~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~-~pDi~--~~gK~l~~G~p 272 (426)
T PRK00062 197 EIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGV-TPDLT--TLGKIIGGGLP 272 (426)
T ss_pred cEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCC-CcchH--hhhhHhhCCCc
Confidence 3456666666777899988 999999999999999999999754 2111110011222 25654 45799875333
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---CCe
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD---KRF 156 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~---~g~ 156 (239)
.|++..+ ++......... ... ..+..++.+........+++.+..+ +..++..++.+++++.|++. -++
T Consensus 273 ~ga~~~~-~~i~~~~~~~~-~~~---~~~T~~~~p~~~aaa~a~L~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (426)
T PRK00062 273 VGAFGGR-REIMEQLAPLG-PVY---QAGTLSGNPLAMAAGLATLKLLKEP---GFYEELEALTKRLAEGLKEAAKKAGI 344 (426)
T ss_pred ceeeeEH-HHHHHhhccCC-Cce---ecccCcCCHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5666543 33332221000 000 0011112222233334445554333 34455556777777776532 133
Q ss_pred EEEcCCCeeEEEEEEcC
Q 048438 157 EVVFPCHFAVVCFRVSP 173 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~~ 173 (239)
..-......++.+.+.+
T Consensus 345 ~~~vrg~G~~~~i~l~~ 361 (426)
T PRK00062 345 PLTVNRVGSMFGLFFTD 361 (426)
T ss_pred ceEEEEecceEEEEEec
Confidence 22112334566666643
No 327
>PRK06149 hypothetical protein; Provisional
Probab=98.00 E-value=0.00026 Score=68.83 Aligned_cols=204 Identities=9% Similarity=-0.059 Sum_probs=106.1
Q ss_pred CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCccc-ccccCCCCCcceEEEcCcccCCCc
Q 048438 3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEF-RHFIDGVEGADSFSLNAHKWFFAT 77 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~-~~~~~~~~~~Ds~~~~~hK~l~~P 77 (239)
..+.+|++--...+.|.+-| +++|.++|++||+.+++|.+|.+.--....+ .....++. .|.+++ -|.+++-
T Consensus 743 ~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~-PDivt~--gK~lg~G 819 (972)
T PRK06149 743 RGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVV-PDIITM--AKGMGNG 819 (972)
T ss_pred CceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCC-CCEEEe--cccccCC
Confidence 34566666666666788888 9999999999999999999994331212111 00023553 898865 7988764
Q ss_pred ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-Ce
Q 048438 78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RF 156 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~ 156 (239)
...|++..++ +........ .... .+. ++.+.......+.|+.+..++ ..++..++.++|++.|+++. ..
T Consensus 820 ~Pl~av~~~~-~i~~~~~~~-~~~~----sT~-~gnP~~~aaala~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~ 889 (972)
T PRK06149 820 HPLGAVITRR-EIAEALEAE-GYFF----SST-GGSPVSCRIGMAVLDVLREEK---LQENARRVGDHLKARLEALADRH 889 (972)
T ss_pred eeeEEEEEcH-HHHhhhccC-Cccc----CCC-CCCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhC
Confidence 5567777754 332211110 0000 011 222333333334455554443 44455577788888876531 11
Q ss_pred EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
.++... .--++.+.+...... ...+ .+....+.++|.++|.++.. ... ...+||+.+---.
T Consensus 890 ~~i~~vrG~Gl~~gvel~~~~~~-----------~~~~----~~~~~~i~~~l~~~Gvl~~~-~g~-~~~vl~~~Ppl~i 952 (972)
T PRK06149 890 PLIGAVHGMGLYLGVELVRDRQT-----------LEPA----TEETAAICDRLLELGVIMQP-TGD-HLNILKIKPPLCL 952 (972)
T ss_pred CCeEEEeecceEEEEEEecCccc-----------CCCC----hHHHHHHHHHHHhCCeEEee-cCC-CCCEEEEECCCcC
Confidence 122211 122444544321000 0001 12345778888888766432 211 1367888754334
Q ss_pred CC
Q 048438 235 TE 236 (239)
Q Consensus 235 t~ 236 (239)
|+
T Consensus 953 t~ 954 (972)
T PRK06149 953 DR 954 (972)
T ss_pred CH
Confidence 33
No 328
>PRK12403 putative aminotransferase; Provisional
Probab=98.00 E-value=0.0004 Score=62.12 Aligned_cols=79 Identities=18% Similarity=0.076 Sum_probs=53.3
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g 79 (239)
..+|++--...+.|.+.| +++|.++|++||+.+++|.+|++.--...-+.....++. .|.++ .-|.+++-+ .
T Consensus 223 iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~-PDiv~--~gK~lggG~~P 299 (460)
T PRK12403 223 VAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFE-PDTLS--IAKGLTSGYVP 299 (460)
T ss_pred eEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCC-CCeEE--Ecccccccccc
Confidence 456666666677788888 999999999999999999999653221211111123554 79887 579887432 4
Q ss_pred ceEEEee
Q 048438 80 CCCLWAT 86 (239)
Q Consensus 80 ~g~l~~~ 86 (239)
.|.++.+
T Consensus 300 iga~v~~ 306 (460)
T PRK12403 300 MGGLVLS 306 (460)
T ss_pred eEEEEEC
Confidence 5666664
No 329
>PRK07482 hypothetical protein; Provisional
Probab=97.97 E-value=0.0003 Score=62.93 Aligned_cols=208 Identities=12% Similarity=0.038 Sum_probs=102.1
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g 79 (239)
..+|++--.....|.+-| +++|.++|++||+.+++|..+.+.--....+.....++. .|.+++ -|.+++-+ .
T Consensus 221 iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gKgl~gG~~P 297 (461)
T PRK07482 221 IAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIE-PDLITV--AKGLTSAYAP 297 (461)
T ss_pred EEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCC-CCEEEE--ccccccCccc
Confidence 455555555555566644 789999999999999999998764222221111133554 999986 68886532 3
Q ss_pred ceEEEeeCcccccccccCC--CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCe
Q 048438 80 CCCLWATNPEYLKNKATES--KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRF 156 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~ 156 (239)
.|.+++++ ++........ ...+. ...++ .+.+.......++++.+..++ ..++..++.+++.+.|+++ ...
T Consensus 298 i~av~~~~-~i~~~~~~~~~~~~~~~-h~~T~-~gnpl~~Aaa~a~L~~~~~~~---l~~~~~~~g~~l~~~L~~l~~~~ 371 (461)
T PRK07482 298 LSGSIVGE-KVWDVLEQGSDEHGAIG-HGWTY-SGHPICAAAALANLDILEREN---LVGNAAEVGAYFRARLRAAFGDH 371 (461)
T ss_pred cceeeecH-HHHHHHhcccccCCccc-cCCCC-CcCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHhcC
Confidence 55666643 2221111000 00000 00111 122222233334455554443 3444557777887777642 111
Q ss_pred EEEcC--CCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 157 EVVFP--CHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 157 ~~~~~--~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
.++.. -.-.++.+.+...... . .+.+....+...+.+.+.++|.+... ..+...+|+.+.--.
T Consensus 372 ~~v~~vrG~Glm~giel~~~~~~---------~---~~~~~~~~~~~~i~~~~~~~Gvl~~~---~~~~~~i~~~Ppl~i 436 (461)
T PRK07482 372 PLVGEVRGVGMLAAVEFVADRDD---------R---TPFDPALKIGPQVSAAALERGVIARA---MPHGDILGFAPPLVL 436 (461)
T ss_pred CCEEEEeeceeEEEEEeccCCCc---------C---CCCChhhHHHHHHHHHHHHCCcEEec---CCCCCEEEEeCCCCC
Confidence 11211 1123445555321100 0 00000023445788888888865422 112357888755444
Q ss_pred CC
Q 048438 235 TE 236 (239)
Q Consensus 235 t~ 236 (239)
|+
T Consensus 437 t~ 438 (461)
T PRK07482 437 TR 438 (461)
T ss_pred CH
Confidence 43
No 330
>PLN02231 alanine transaminase
Probab=97.96 E-value=0.00098 Score=60.70 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=81.9
Q ss_pred ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEeccccccccc-Ccc---cccccC--CC--CCcceEE-EcCc
Q 048438 4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACI-FPE---FRHFID--GV--EGADSFS-LNAH 71 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~-~~~---~~~~~~--~~--~~~Ds~~-~~~h 71 (239)
.|-+|+++.-.|.||.+.+ +++|+++|++||++++.|.+|.-.... -.. ...... +. .....++ .|+.
T Consensus 271 ~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~S 350 (534)
T PLN02231 271 TVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVS 350 (534)
T ss_pred CeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccC
Confidence 4556666667899999865 677888999999999999998754321 011 111110 11 0122444 4999
Q ss_pred ccCCC-c-ccceEEEee--CcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHH--hCHHHH-------HHHHHH
Q 048438 72 KWFFA-T-LDCCCLWAT--NPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRN--YGMENL-------RHFLRS 138 (239)
Q Consensus 72 K~l~~-P-~g~g~l~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~g~-------~~~~~~ 138 (239)
|.+++ | .-+|.+.+. +++.+....... .. .. ++..........+++. .|...+ .+..+.
T Consensus 351 K~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~--~~-----~~-~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~ 422 (534)
T PLN02231 351 KGYYGECGKRGGYMEVTGFTSDVREQIYKVA--SV-----NL-CSNISGQILASLVMSPPKPGDESYESYMAEKDGILSS 422 (534)
T ss_pred cccccCCccceEEEEEecCCHHHHHHHHHHH--hh-----hc-CCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHH
Confidence 97643 2 336666542 233332221000 00 00 1111111111112210 011111 223455
Q ss_pred HHHHHHHHHHHHhCCCCeEEEcCCCeeEEEE
Q 048438 139 HVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169 (239)
Q Consensus 139 ~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f 169 (239)
..+.++.+.+.|++.+|+++. +|+.++..|
T Consensus 423 ~~~r~~~l~~~L~~~~gi~~~-~p~Ggfylw 452 (534)
T PLN02231 423 LARRAKTLEDALNSLEGVTCN-KAEGAMYLF 452 (534)
T ss_pred HHHHHHHHHHHHhcCCCceec-CCCeeeEEe
Confidence 667788899999988888865 566666666
No 331
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=97.96 E-value=0.0004 Score=61.56 Aligned_cols=137 Identities=14% Similarity=0.062 Sum_probs=78.4
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|++--...+.|.+.| +++|.++|++||+.+++|.+|.+. -....+.....++. .|.+++ -|.+++-..
T Consensus 200 ~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~-PDivt~--gK~lggG~P 275 (428)
T PRK12389 200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVE-PDLTAL--GKIIGGGLP 275 (428)
T ss_pred cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCC-CCeeee--chhhcCCCc
Confidence 3556666666677888888 999999999999999999999865 21111111123443 887654 798876455
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
.|.+..+ ++......... .. ....++ .+.+.......++|+.+..+ +..++..++.++|.+.|++
T Consensus 276 i~av~~~-~~i~~~~~~~~-~~--~~~~T~-~gnpl~~Aaala~L~~l~~~---~l~~~~~~~g~~l~~~L~~ 340 (428)
T PRK12389 276 IGAYGGR-KDIMEQVAPLG-PA--YQAGTM-AGNPASMAAGIACLEVLQQE---GVYEKLDRLGAMLEEGILE 340 (428)
T ss_pred eeEEeEH-HHHHhhhccCC-Cc--ccccCC-ccCHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHH
Confidence 6777654 33332221100 00 000011 12222233333455555433 3455566888888888865
No 332
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=97.95 E-value=0.00069 Score=58.45 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=97.0
Q ss_pred EEEEEecCCCCcc-cccChhHHHHHHHHhCCEEEEecc-cccccccCcccccccCCCCCcceEEEcCcccCCCccc----
Q 048438 6 LFLCATIGTTAIT-AVDPLKPLCDVAKQFGIWVHVDAA-YAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD---- 79 (239)
Q Consensus 6 ~~vv~t~gtt~~G-~i~pl~~i~~i~~~~gi~lhvD~A-~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g---- 79 (239)
+.|++-. .+..| .+.++.+|.+.+|++|..++|=+= -+.+.+.-| +--++|.++.+.+-+ +.|.|
T Consensus 212 ~gv~vQy-P~~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pP-------Ge~GADIvvG~~Qrf-GvPmgfGGP 282 (450)
T COG0403 212 FGVLVQY-PNTFGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPP-------GEFGADIVVGSAQRF-GVPMGFGGP 282 (450)
T ss_pred EEEEEec-CCCCCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCc-------cccCCceEEecCccc-CCCcCCCCc
Confidence 3343333 44677 677799999999999998877552 223333222 111599999999996 56755
Q ss_pred -ceEEEeeCcccccccccC-CCCccCC---CCceecCC------CCCC---------h-HHHH--HHHHHhCHHHHHHHH
Q 048438 80 -CCCLWATNPEYLKNKATE-SKPVVDY---KDWQITLS------RSFR---------S-LKLW--FVIRNYGMENLRHFL 136 (239)
Q Consensus 80 -~g~l~~~~~~~l~~~~~~-~~~~~~~---~~~~~~~~------~~~~---------~-~~~~--~~l~~~g~~g~~~~~ 136 (239)
+|+|-+++ ++.++.... -+.+.|- ..+.+... ||-. + +++. ..+..+|.+|++++.
T Consensus 283 hag~fA~~~-~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA 361 (450)
T COG0403 283 HAGYFAVKD-EFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIA 361 (450)
T ss_pred ceeeeeEhH-hHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 66777654 443332210 0011111 11122111 1211 0 1111 234578999999999
Q ss_pred HHHHHHHHHHHHHHhCCC-CeEEEcCCCeeEEEEEEc
Q 048438 137 RSHVNMARLFERLVSGDK-RFEVVFPCHFAVVCFRVS 172 (239)
Q Consensus 137 ~~~~~la~~l~~~l~~~~-g~~~~~~~~~~iv~f~~~ 172 (239)
++.++++.++.++|+++. |++++.+...+-+.++++
T Consensus 362 ~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~ 398 (450)
T COG0403 362 ERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVP 398 (450)
T ss_pred HHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecc
Confidence 999999999999999653 689887777788888875
No 333
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=97.94 E-value=0.00029 Score=62.21 Aligned_cols=79 Identities=16% Similarity=0.051 Sum_probs=50.1
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.+.+|++.....++|.+.| +++|.++|++||+++++|.+|.+. ..-..+.....++. .|.+ ++.|.+++-..
T Consensus 195 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~-pDi~--t~sK~l~~G~p 270 (423)
T TIGR00713 195 EIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVE-PDLT--TLGKIIGGGLP 270 (423)
T ss_pred cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCC-cchh--hhhhhhcCCCc
Confidence 3455666544444798877 789999999999999999999654 21111111122332 6754 57899874333
Q ss_pred ceEEEee
Q 048438 80 CCCLWAT 86 (239)
Q Consensus 80 ~g~l~~~ 86 (239)
.|.++.+
T Consensus 271 ig~v~~~ 277 (423)
T TIGR00713 271 VGAFGGR 277 (423)
T ss_pred eeeeeEH
Confidence 6666654
No 334
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=97.94 E-value=0.00058 Score=61.23 Aligned_cols=138 Identities=12% Similarity=0.007 Sum_probs=76.9
Q ss_pred ccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
...+|++--...+.|.+.| +++|.++|++||+.+++|.+|.+. -....+.....++. .|.+++ -|.+++-+.
T Consensus 246 ~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~-PDi~t~--gK~lggG~P 321 (474)
T PLN02482 246 EIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGGAQEYFGIT-PDLTTL--GKVIGGGLP 321 (474)
T ss_pred ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCC-CCEEEe--cchhhCCCc
Confidence 3456666666677788877 457999999999999999999654 21111111123443 888655 799876455
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
+|.+..+ +++........ ... ...++ .+.+........+|+.+..+ +..++..++.++|++.|+++
T Consensus 322 igav~g~-~ei~~~~~~~~-~~~--~~~T~-~gnpl~~aAala~L~~l~~~---~~~~~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 322 VGAYGGR-REIMEMVAPAG-PMY--QAGTL-SGNPLAMTAGIHTLKRLQQP---GTYEYLDKITKKLIQGILEA 387 (474)
T ss_pred eEEEEEc-HHHHHhhccCC-Ccc--cccCc-chhHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHH
Confidence 6777554 34433221100 000 00111 11122222333445555332 35556668888888888654
No 335
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.91 E-value=0.0011 Score=59.23 Aligned_cols=200 Identities=11% Similarity=0.048 Sum_probs=101.0
Q ss_pred ccEEEEEecC-CCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438 4 IPLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 4 ~p~~vv~t~g-tt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~ 78 (239)
...+|++--. ....|.+.| +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++ -|.+++-+
T Consensus 221 ~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~-PDivt~--gKgl~gG~ 297 (453)
T PRK06943 221 KIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVW-PDFLCL--SKGISGGY 297 (453)
T ss_pred ceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCC-CCeEee--ehhhccCc
Confidence 3455555542 444566544 899999999999999999998654222211111123554 999988 68776542
Q ss_pred -cceEEEeeCcccccccccCC-CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC---
Q 048438 79 -DCCCLWATNPEYLKNKATES-KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD--- 153 (239)
Q Consensus 79 -g~g~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~--- 153 (239)
..|.++.++ ++........ ...+ ....+ ..+.+.......+.|+.+..+ +.+++..++.++|.+.|+++
T Consensus 298 ~Pi~av~~~~-ei~~~~~~~~~~~~~-~~~~T-~~gnpl~~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~~ 371 (453)
T PRK06943 298 LPLSLVLSRD-AIFAAFYDDDVTRGF-LHSHS-YTGNPLACRAALATLDLFAED---DVLARNARKSARLRAALAPLAAH 371 (453)
T ss_pred ccceEEEEcH-HHHHhhcccCccCCc-cCCCC-CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcC
Confidence 466677654 3322211100 0000 00001 112222222233344444333 34455567778888877654
Q ss_pred CCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 154 KRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 154 ~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
+.+.-+ .-.--++.+.+.... .. ...+..++.+.+.++|.++.. .| ..+|+++---
T Consensus 372 ~~v~~v-rG~Gl~~gvel~~~~---------------~~---~~~~~~~i~~~~~~~Gll~~~----~g-~~l~~~Ppl~ 427 (453)
T PRK06943 372 PQVRHL-RQRGTIFAFDVALDG---------------DA---ARTFSRRFFEAALERELLLRP----IG-TTVYLMPPYV 427 (453)
T ss_pred CCEEeE-eccccEEEEEEccCC---------------Cc---chHHHHHHHHHHHHCCcEEEe----cC-CEEEEeCCCc
Confidence 222211 011224444543210 00 023455777888888876542 13 3588875544
Q ss_pred CCC
Q 048438 234 LTE 236 (239)
Q Consensus 234 ~t~ 236 (239)
.|+
T Consensus 428 it~ 430 (453)
T PRK06943 428 LDD 430 (453)
T ss_pred CCH
Confidence 444
No 336
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.91 E-value=0.00053 Score=61.42 Aligned_cols=206 Identities=10% Similarity=0.016 Sum_probs=102.5
Q ss_pred cEEEEEec-CCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438 5 PLFLCATI-GTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 5 p~~vv~t~-gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
..+|++-- .....|.+.| +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++ -|.+++-+
T Consensus 215 iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~-PDiv~~--gKgl~gG~~ 291 (466)
T PRK07030 215 IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIR-PDFLCL--SKALTGGYL 291 (466)
T ss_pred eEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCC-CCEEee--ehhccCCcc
Confidence 45555554 2444566555 789999999999999999987654222211111123554 999988 68776542
Q ss_pred cceEEEeeCcccccccccCC--CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Q 048438 79 DCCCLWATNPEYLKNKATES--KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRF 156 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~ 156 (239)
..|.+..++ ++........ ...+ ....+ ..+.+.......+.|+.+-.+ +..++..++.++|.+.|+++...
T Consensus 292 Pi~av~~~~-ei~~~~~~~~~~~~~~-~h~~T-~~gnpla~aaa~a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l~~~ 365 (466)
T PRK07030 292 PLAAVLTTD-TVYQAFYDDYPTLRAF-LHSHS-YTGNPLACAAALATLDIFEQD---NVIENNRALARRMAEATAHLADH 365 (466)
T ss_pred cceEEEecH-HHHHHHhccccccccc-ccCCC-CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcC
Confidence 466676643 3322111000 0000 00011 112222223333345555443 34556668888888888765222
Q ss_pred EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
..+.+. .--++.+.+..... ... +-. . ......++.+++.++|.+... .| .++|+.+.--.
T Consensus 366 ~~v~~vrG~Gl~~gie~~~~~~---------~~~-~~~-~-~~~~~~~i~~~~~~~Gvl~~~----~g-~~i~~~Ppl~i 428 (466)
T PRK07030 366 PHVAEVRQTGMILAIEMVQDKA---------SKT-PYP-W-QERRGLKVYQHALERGALLRP----LG-SVVYFLPPYVI 428 (466)
T ss_pred CCEEEeEeceeEEEEEeccCcc---------ccc-cCc-c-hhHHHHHHHHHHHHCCeEEEe----cC-CEEEEECCccC
Confidence 222221 12245555532110 000 000 0 012234677788888866532 13 47888754444
Q ss_pred CC
Q 048438 235 TE 236 (239)
Q Consensus 235 t~ 236 (239)
|+
T Consensus 429 t~ 430 (466)
T PRK07030 429 TP 430 (466)
T ss_pred CH
Confidence 43
No 337
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.90 E-value=0.00038 Score=62.24 Aligned_cols=207 Identities=10% Similarity=-0.016 Sum_probs=100.5
Q ss_pred cEEEEEec-CCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438 5 PLFLCATI-GTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 5 p~~vv~t~-gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
..+|++-- .....|.+.| +++|.++|++||+.+++|..+.+.--....+.....++. .|.+++ -|.+++-+
T Consensus 224 iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~-PDiv~~--gK~l~gG~~ 300 (460)
T PRK06916 224 IAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVT-PDIMTA--GKGLTGGYL 300 (460)
T ss_pred EEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCC-CCeeee--ehhhhcCcc
Confidence 44555544 2444566543 789999999999999999998653221211111123454 898875 68776542
Q ss_pred cceEEEeeCcccccccccCCCCccCC-CCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDY-KDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
..|.+..++ ++.............. ...++ .+.+.......++++.+..+ +..++..++.+++.+.|+++....
T Consensus 301 Pi~av~~~~-ei~~~~~~~~~~~~~~~~~~T~-~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~l~~l~~~~ 375 (460)
T PRK06916 301 PIAITVTTD-EIYNAFYGDYEEQKTFFHGHSY-TGNPLGCAVALANLELYEKT---NLIEQVARKTEYVATQLEDLFALK 375 (460)
T ss_pred ccceeeecH-HHHHHhhccccccCccccCCCC-CCCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhcCC
Confidence 466677653 3332211100000000 00111 12222222233344444333 345566688888888887653222
Q ss_pred EEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 158 VVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 158 ~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
++.+. .-.++.+.+..+.. ..............+...+.++|.++.. .| .++|+.+.--.|
T Consensus 376 ~v~~vrG~Glm~giel~~~~~------------~~~~~~~~~~~~~~i~~~~~~~Gvl~~~----~g-~~l~~~Ppl~it 438 (460)
T PRK06916 376 HVGDIRQLGLMVGIELVKNKE------------TKEPFEWTERVGVQVCKRSRELGMLTRP----LG-NTIVFMPPLAST 438 (460)
T ss_pred CeEEeecCCceeeEEeecccc------------cccCCCchhhHHHHHHHHHHHCCeEEEe----cC-CEEEEeCCcccC
Confidence 22221 11234444432110 0000000012334677778888866532 13 478887555444
Q ss_pred C
Q 048438 236 E 236 (239)
Q Consensus 236 ~ 236 (239)
+
T Consensus 439 ~ 439 (460)
T PRK06916 439 I 439 (460)
T ss_pred H
Confidence 4
No 338
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=97.90 E-value=0.00056 Score=61.23 Aligned_cols=207 Identities=12% Similarity=-0.005 Sum_probs=104.4
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+.+|++--....-|.+-| ++++.++|++||+.+++|..+.+.--...-+.....++. .|.+++ -|.+++-...
T Consensus 232 iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~-PDiv~~--gKglggG~Pl 308 (464)
T PRK06938 232 PAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGII-PDVVVL--SKAIGGSLPL 308 (464)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCC-CCEEEe--eccccCCCce
Confidence 455555544455566655 799999999999999999988754222211111123454 899987 5887765567
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~ 159 (239)
|.++.++ + +..... . ....++ .+.+.......+.|+.+..++ ..++..++.++|.+.|+++. ...++
T Consensus 309 sAv~~~~-~-~~~~~~---~---~~~~T~-~gnpla~Aaa~a~L~~l~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~i 376 (464)
T PRK06938 309 AVVVYRE-W-LDTWQP---G---AHAGTF-RGNQMAMAAGSATLRYIKEHR---LAEHAAAMGERLREHLRQLQRDYPQL 376 (464)
T ss_pred EEEeehh-H-hhccCC---C---CCCCCC-CcCHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7777654 2 221110 0 000111 122222233334455554443 34455577777777776531 12222
Q ss_pred cCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 FPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
.+. .--++.+.+...... .+..............+...+.++|.++.. ... ...+||+.+.--.|++
T Consensus 377 ~~VrG~Glm~gie~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~-~g~-~~~~l~~~Ppl~it~~ 445 (464)
T PRK06938 377 GDVRGRGLMLGVEIVDPQGE---------PDALGHPPANGELASLIQRECLRRGLILEL-GGR-HGSVVRFLPPLIITAE 445 (464)
T ss_pred eeeeccceEEEEEeccCccc---------ccccccCCccHHHHHHHHHHHHHCCeEEee-cCC-CCCEEEEECCCccCHH
Confidence 221 123455555321100 000000000013445677778888866532 111 1368999866555543
No 339
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=97.90 E-value=3.8e-05 Score=68.75 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=94.8
Q ss_pred EEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeC
Q 048438 8 LCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATN 87 (239)
Q Consensus 8 vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~ 87 (239)
.++....|..|+.-++++|.+.++.+++|+.+|.+|+...-..+....... -..+|+++-|.||.+.+-..++.+.+++
T Consensus 169 ~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~-~~~~~~~tqS~HK~l~alSQaS~iHv~~ 247 (557)
T COG1982 169 LAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESAL-NGGADFVTQSTHKLLAALSQASMIHVKD 247 (557)
T ss_pred eEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhh-hcCceEEEechhhhhhhhhhhHHHhhCC
Confidence 345556788999999999999999999999999999876554443322111 1359999999999999988888888875
Q ss_pred cccccccccCCCCccCCCCceecCC-CC-CChHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC
Q 048438 88 PEYLKNKATESKPVVDYKDWQITLS-RS-FRSLKLWFVI----RNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP 161 (239)
Q Consensus 88 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l----~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~ 161 (239)
..++....-. .. +....+ .+ +..++..... ...|..-+++-+....+.++++++.+.++++|+++.+
T Consensus 248 ~~~~~~~r~n--ea-----~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~ 320 (557)
T COG1982 248 GRAVNHERFN--EA-----LMMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQP 320 (557)
T ss_pred CccCCHHHHH--HH-----HHHHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccc
Confidence 3122111000 00 011111 11 1111111111 1224444455577888899999999999888988876
Q ss_pred C
Q 048438 162 C 162 (239)
Q Consensus 162 ~ 162 (239)
+
T Consensus 321 ~ 321 (557)
T COG1982 321 E 321 (557)
T ss_pred c
Confidence 5
No 340
>PRK06148 hypothetical protein; Provisional
Probab=97.89 E-value=0.0003 Score=68.61 Aligned_cols=205 Identities=10% Similarity=0.007 Sum_probs=109.7
Q ss_pred CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcc-cccccCCCCCcceEEEcCcccCCCc
Q 048438 3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPE-FRHFIDGVEGADSFSLNAHKWFFAT 77 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~-~~~~~~~~~~~Ds~~~~~hK~l~~P 77 (239)
..+.+|++--...+-|.+.| ++++.++|++||+.+++|..|.+.--.... +.....++. .|.+++ -|.+++-
T Consensus 783 ~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~-PDivt~--gK~lggG 859 (1013)
T PRK06148 783 RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVV-PDIVTM--GKPIGNG 859 (1013)
T ss_pred CceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCC-cceeee--cccccCC
Confidence 34566666666666788777 999999999999999999998653211110 110123553 899877 7888765
Q ss_pred ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-Ce
Q 048438 78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RF 156 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~ 156 (239)
...|.+..++ +........ .. . .+-.++.+.......++++.+..++ ..++..++.++|.+.|+++. ..
T Consensus 860 ~Plgav~~~~-ei~~~~~~g--~~---~-~~Tf~gnpla~aaa~a~L~~i~~e~---l~~~~~~~G~~l~~~L~~l~~~~ 929 (1013)
T PRK06148 860 HPMGAVVTTR-EIADSFDNG--ME---Y-FNTFGGNPVSCAIGLAVLDIIEDED---LQRNALEIGNYLLAGLRELQDRF 929 (1013)
T ss_pred cceEEEEEcH-HHHhhccCC--Cc---c-ccCCCCCHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhC
Confidence 6677787753 333222110 00 0 0111122222333334455554443 44455578888888886531 11
Q ss_pred EEEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCC
Q 048438 157 EVVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATL 234 (239)
Q Consensus 157 ~~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~ 234 (239)
.++... .--++.+.+..... +.+...+....+.+.|.++|.++.. ... ...++|+.+.-..
T Consensus 930 ~~i~~VrG~Gl~~gvel~~~~~---------------~~~~~~~~~~~i~~~~~~~Gvl~~~-~g~-~~~vlr~~Ppl~i 992 (1013)
T PRK06148 930 DIIGDVRGMGLFLGIELVTDRK---------------TKAPATAIARYVKNGARERGILIGT-EGP-HDNVLKIRPPLIF 992 (1013)
T ss_pred CCceEEeeeceEEEEEecCCcc---------------ccCccHHHHHHHHHHHHhCCeEEec-cCC-CCCEEEEeCCccC
Confidence 222221 12244555532110 0000123455788888888866532 211 2378999866555
Q ss_pred CCc
Q 048438 235 TEE 237 (239)
Q Consensus 235 t~~ 237 (239)
|++
T Consensus 993 t~~ 995 (1013)
T PRK06148 993 SRA 995 (1013)
T ss_pred CHH
Confidence 543
No 341
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=97.89 E-value=0.00057 Score=59.79 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=97.4
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccc-cccC---CCC--Ccc--eEEEcCccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFID---GVE--GAD--SFSLNAHKW 73 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~-~~~~---~~~--~~D--s~~~~~hK~ 73 (239)
+-+++.+.-+|.||.+.+ +++|+++|++|++|+++|.+|+-....-.... .... .+. ..| .+..++.|.
T Consensus 167 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 246 (396)
T PRK09147 167 TQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKR 246 (396)
T ss_pred cEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccc
Confidence 445556677899999875 67778889999999999999875432110000 0010 010 012 677899996
Q ss_pred CCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHh
Q 048438 74 FFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVS 151 (239)
Q Consensus 74 l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~g~~~~~~~~~~la~~l~~~l~ 151 (239)
++.| .-+|.++. .+..+...... .....+ ....+...+++..+ ..+-+++..+...+..+.+.+.|.
T Consensus 247 ~~~~GlRiG~~~~-~~~l~~~~~~~----~~~~~~------~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 315 (396)
T PRK09147 247 SNVPGLRSGFVAG-DAALLKKFLLY----RTYHGC------AMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILA 315 (396)
T ss_pred cCCccceeeeecC-CHHHHHHHHHH----hhhccc------CCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5444 44666654 33333222110 000000 01111122212222 122344455555566667777776
Q ss_pred CCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHH-hcCcEEEEEEEE--------CC
Q 048438 152 GDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESIN-ASGKAYMTNVVL--------GG 222 (239)
Q Consensus 152 ~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~g~~~~~~~~~--------~g 222 (239)
+. +.+..+...+.+.++++. . ...+.++|. +.|..+.....+ .+
T Consensus 316 ~~--~~~~~p~~g~f~~~~~~~-~------------------------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~ 368 (396)
T PRK09147 316 PV--LDVQLPDAGFYLWAKVPG-D------------------------DTEFARRLYADYNVTVLPGSYLAREAHGVNPG 368 (396)
T ss_pred Hh--cCCCCCCeeEEEEEECCC-C------------------------HHHHHHHHHHhCCEEEeCCccccccccCCCCC
Confidence 53 443334445555555541 1 014455554 446555443322 23
Q ss_pred EeEEEEEecCC
Q 048438 223 IYAIRFATGAT 233 (239)
Q Consensus 223 ~~~lR~~~~~~ 233 (239)
..++|+++..+
T Consensus 369 ~~~iRi~~~~~ 379 (396)
T PRK09147 369 AGRVRIALVAP 379 (396)
T ss_pred CCeEEEEecCC
Confidence 57899998754
No 342
>PRK07480 putative aminotransferase; Validated
Probab=97.85 E-value=0.00097 Score=59.58 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=51.2
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g 79 (239)
..+|++--.....|.+.| +++|.++|++||+.+++|..|.+.--...-+.....++. .|.+++ -|.+++-+ .
T Consensus 220 vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gK~l~gG~~P 296 (456)
T PRK07480 220 VAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIK-PDLMTI--AKGLTSGYIP 296 (456)
T ss_pred EEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCC-CCeeee--ehhhccCCcc
Confidence 445555555555678777 999999999999999999998653221111111123443 888766 68876532 3
Q ss_pred ceEEEeeC
Q 048438 80 CCCLWATN 87 (239)
Q Consensus 80 ~g~l~~~~ 87 (239)
.|.++.++
T Consensus 297 i~av~~~~ 304 (456)
T PRK07480 297 MGAVGVGD 304 (456)
T ss_pred ceEEEEcH
Confidence 56666643
No 343
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=97.84 E-value=0.0017 Score=57.91 Aligned_cols=198 Identities=13% Similarity=0.032 Sum_probs=96.4
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
..+|++--.....|.+.| +++|.++|++||++++.|..+.+.......+.....++ ..|.+ ++.|.+++-..+
T Consensus 220 iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v-~pDi~--t~sK~l~~G~pi 296 (451)
T PRK06918 220 IAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDV-VPDLI--TVSKSLGAGVPI 296 (451)
T ss_pred eEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCC-CCCEE--eeehhhcCCCcc
Confidence 445555444444565444 78899999999999999999865422111110001122 27754 578998755557
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC----CCe
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD----KRF 156 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~----~g~ 156 (239)
|.++.+ +++....... . ...+ .++.+........+++.+..+.+.+ +..++.+++.++|+++ +.+
T Consensus 297 g~v~~~-~~i~~~~~~~----~--~~~T-~~g~~l~~aaa~a~l~~i~~~~~~~---~~~~~g~~l~~~l~~l~~~~~~~ 365 (451)
T PRK06918 297 SGVIGR-KEIMDESAPG----E--LGGT-YAGSPLGCAAALAVLDIIEKENLND---RAIELGKVVMNRFEEMKNKYNCI 365 (451)
T ss_pred EEEEEc-HHHHhccCCC----C--cCcC-CCcCHHHHHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHhhCCCc
Confidence 777764 3333322110 0 0001 1111222222223444443333333 3445666666666543 211
Q ss_pred EEEcCCCeeEEEEEEc-CCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 157 EVVFPCHFAVVCFRVS-PLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 157 ~~~~~~~~~iv~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
.-+. ..-.+..+.+. +.... ..+ ......+.+.+.++|.++.+.... ..++|+++..-.|
T Consensus 366 ~~vr-g~G~~~~~~~~~~~~~~------------~~~----~~~~~~l~~~~~~~Gvlv~~~~~~--~~~lrl~p~l~~t 426 (451)
T PRK06918 366 GDVR-GLGAMCAFELVQDRKTK------------EPD----KTLTANICKEANKRGLLLLSAGTY--GNVIRVLMPLVIT 426 (451)
T ss_pred eeec-cceeEEEEEEccCCCcC------------CCc----HHHHHHHHHHHHHCCeEEeecCCC--CCEEEEECCCccC
Confidence 1121 22334444442 11000 001 234457777788888776542111 2679998754343
No 344
>PRK06855 aminotransferase; Validated
Probab=97.82 E-value=0.001 Score=59.00 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=81.7
Q ss_pred EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCC-CCcceEEEcCcccCCCc-ccc
Q 048438 6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV-EGADSFSLNAHKWFFAT-LDC 80 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~-~~~Ds~~~~~hK~l~~P-~g~ 80 (239)
.+++.+.-+|.||.+.+ +++|+++|++||+|++.|.+|+-....-........-. +.--++..|+.|.++.| .=+
T Consensus 173 ~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRi 252 (433)
T PRK06855 173 AGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRC 252 (433)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceE
Confidence 45555667899999887 56677889999999999999874432111111110000 11126778999998645 336
Q ss_pred eEEEeeC----c---ccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHH
Q 048438 81 CCLWATN----P---EYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG----MENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 81 g~l~~~~----~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g----~~g~~~~~~~~~~la~~l~~~ 149 (239)
|++...+ + .++...... . ....+ ...+...++...+. .+-+++..+...+..+.+.+.
T Consensus 253 G~ii~p~~~~~~~~~~~~~~~~~~-------~--~~~~~--~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 321 (433)
T PRK06855 253 GWIEVYNADKDEVFKKYINSILNA-------K--MIEVC--STTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEK 321 (433)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHh-------h--ccccC--CChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776521 1 111111000 0 00001 01122222222331 123445555566777788888
Q ss_pred HhCCCCeEEEcCCCeeE-EEEEEc
Q 048438 150 VSGDKRFEVVFPCHFAV-VCFRVS 172 (239)
Q Consensus 150 l~~~~g~~~~~~~~~~i-v~f~~~ 172 (239)
|++.+++.+. +|+.+. +.++++
T Consensus 322 L~~~~~~~~~-~p~gg~~~w~~l~ 344 (433)
T PRK06855 322 LKDVPGLKVN-RTNGAFYMTVVFE 344 (433)
T ss_pred HhcCCCeecc-CCCeeEEEeeccc
Confidence 9887777654 555543 333443
No 345
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=97.80 E-value=0.00097 Score=57.50 Aligned_cols=182 Identities=14% Similarity=0.068 Sum_probs=96.7
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccce
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCC 81 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g 81 (239)
+-+|+++..+|.||.+.|.+++.++++.. ++++++|.+|+-.... .........-+ -=.++.++.|.++.| .-+|
T Consensus 155 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~-~~~~~~~~~~~-~vi~~~SfSK~~~~~GlRiG 232 (357)
T PRK14809 155 ERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAER-PSAVALVEERD-DVAVLRTFSKAYGLAGLRLG 232 (357)
T ss_pred CcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCC-chhHHHHhhCC-CEEEEecchhHhcCcchhhe
Confidence 34566678889999999988888887654 8999999998753211 00000111101 114567999998644 3467
Q ss_pred EEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Q 048438 82 CLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEVVF 160 (239)
Q Consensus 82 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~ 160 (239)
+++. .++++....... ..+. ...+....++..+.. +-+++..+...+..+++.+.|... . .
T Consensus 233 ~~~~-~~~~~~~~~~~~------~~~~------~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-~----~ 294 (357)
T PRK14809 233 YAVV-PEEWADAYARVN------TPFA------ASELACRAGLAALDDDEHVERTVETARWAREYIREELDAP-T----W 294 (357)
T ss_pred eeec-CHHHHHHHHHhC------CCCC------CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc-c----C
Confidence 6665 334433322100 0011 122333333333322 233444444445556666666542 1 2
Q ss_pred CCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecC
Q 048438 161 PCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGA 232 (239)
Q Consensus 161 ~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~ 232 (239)
++..+.+.+++++ ...+.+.|.++|..+..........++|+++..
T Consensus 295 ~~~g~f~~~~~~~--------------------------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~~ 340 (357)
T PRK14809 295 ESAGNFVLAEVGD--------------------------ASAVAEAAQERGVIVRDCTSFGLPECIRITCGT 340 (357)
T ss_pred CCCCCEEEEECCC--------------------------HHHHHHHHHHCCEEEEECccCCCCCeEEEecCC
Confidence 4555555555531 014556666666655554444334689999753
No 346
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.80 E-value=0.0006 Score=60.32 Aligned_cols=178 Identities=10% Similarity=-0.018 Sum_probs=88.7
Q ss_pred cChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEEeeCcccccccccC-C
Q 048438 21 DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWATNPEYLKNKATE-S 98 (239)
Q Consensus 21 ~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~~~~l~~~~~~-~ 98 (239)
..+++|.++|++||+.+++|.+|.+.--...-+.....++. .|++++ -|.+++- ...|++++++ +........ .
T Consensus 222 ~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~-PDi~t~--gK~l~gG~~p~~av~~~~-~i~~~~~~~~~ 297 (422)
T PRK05630 222 ALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVT-PDIMCV--GKALTGGFMSFAATLCTD-KVAQLISTPNG 297 (422)
T ss_pred HHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCC-CCeeee--echhhcCccccceeeccH-HHHHHHhccCC
Confidence 34899999999999999999998653221111110123443 888855 7998542 1245555543 222111100 0
Q ss_pred CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcC--CCeeEEEEEEcCCCc
Q 048438 99 KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFP--CHFAVVCFRVSPLPV 176 (239)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~~~~~--~~~~iv~f~~~~~~~ 176 (239)
...+. ...++ .+.+..+.....+++.+..+. ..++..++.++|.+.|+++.....+.+ -...++.+.+..+.
T Consensus 298 ~~~~~-h~~T~-~g~Pla~aaa~aaL~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~- 371 (422)
T PRK05630 298 GGALM-HGPTF-MANPLACAVAHASLEIIETGM---WRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPV- 371 (422)
T ss_pred CCccc-cCCCC-cCCHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcc-
Confidence 00000 00111 122222333344555554433 345666888888887765322111222 12345666664321
Q ss_pred chhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 177 LMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
....+.+.+.++|.+... .| .++|+.+---.|
T Consensus 372 ----------------------~~~~~~~~~~~~Gl~~~~----~g-~~l~~~PpL~it 403 (422)
T PRK05630 372 ----------------------DMEEATQAAVDHGVWLRP----FG-RLVYVMPPYITT 403 (422)
T ss_pred ----------------------cHHHHHHHHHHCCeEEEe----cC-CEEEEECCccCC
Confidence 012566677778765432 23 578887544333
No 347
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=97.79 E-value=0.00068 Score=58.54 Aligned_cols=186 Identities=16% Similarity=0.080 Sum_probs=112.2
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcc--eEEEcCcccCCCc-cc
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGAD--SFSLNAHKWFFAT-LD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~D--s~~~~~hK~l~~P-~g 79 (239)
+-+|.++.-+|.||...+.++|.+++... +.+++||.|+.=..- +..-..+. .-+ .+.=++.|.++-+ .=
T Consensus 146 ~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~--~~~~~l~~---~~~nlivlRTfSKa~gLAGlR 220 (356)
T COG0079 146 TKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSP--ESSLELLK---YPPNLIVLRTFSKAFGLAGLR 220 (356)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCC--chhhhhcc---CCCCEEEEEecHHhhhcchhc
Confidence 45677788899999999998888888754 889999999853222 11111111 133 3445899975543 22
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG-MENLRHFLRSHVNMARLFERLVSGDKRFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~g~~~~~~~~~~la~~l~~~l~~~~g~~~ 158 (239)
+|+.+ .+++.+.....-. .+|.. .......+...+. .+-+++..++..+-.+++.+.|++++ +.-
T Consensus 221 lGy~i-a~~~~i~~l~~vr------~p~~v------~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~ 286 (356)
T COG0079 221 VGYAI-ANPELIAALNKVR------PPFNV------SSPALAAAIAALRDADYLEESVERIREERERLYAALKALG-LFG 286 (356)
T ss_pred eeecc-CCHHHHHHHHHhc------CCCCC------CHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhCC-CCe
Confidence 56533 3454443332100 11211 1222222322222 24566777777888899999999985 553
Q ss_pred EcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE-CCEeEEEEEecCC
Q 048438 159 VFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL-GGIYAIRFATGAT 233 (239)
Q Consensus 159 ~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~g~~~lR~~~~~~ 233 (239)
+.|...|-+.++.+.. . ...+.+.|.++|.+....... ....++|+++..+
T Consensus 287 v~pS~aNFvlv~~~~~-----------------------~-~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt~ 338 (356)
T COG0079 287 VFPSQANFVLVRVPDA-----------------------E-AAALAEALLKKGILVRDCSSVGLLPGYLRITVGTP 338 (356)
T ss_pred ecCCCCcEEEEECCCc-----------------------c-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCCH
Confidence 4466788888887641 1 236677788888886665332 2346999998764
No 348
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=97.76 E-value=0.0002 Score=61.48 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=53.9
Q ss_pred EEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438 6 LFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
.+|++--.....|.+.| +++|.++|++||+.+++|..+.+..-...-+.....++. .|.++++ |.+.+-...|
T Consensus 179 aavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~-PDiv~~g--K~l~gG~p~s 255 (339)
T PF00202_consen 179 AAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVD-PDIVTFG--KGLGGGLPIS 255 (339)
T ss_dssp EEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSS-SSEEEEE--GGGGTTSSEE
T ss_pred EEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceeccccc-Ccccccc--cchhhhhhcc
Confidence 45556556666666543 799999999999999999998865322221211134554 8999997 9887767778
Q ss_pred EEEeeC
Q 048438 82 CLWATN 87 (239)
Q Consensus 82 ~l~~~~ 87 (239)
.+++++
T Consensus 256 av~~~~ 261 (339)
T PF00202_consen 256 AVLGSE 261 (339)
T ss_dssp EEEEEH
T ss_pred cccccc
Confidence 888764
No 349
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=97.74 E-value=0.0013 Score=56.40 Aligned_cols=75 Identities=17% Similarity=0.064 Sum_probs=50.4
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEEe
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWA 85 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~ 85 (239)
+++.+..+|.||.+.+.++|.++++ +++++++|.++.... ...........+. =.+..|+.|.++.| .-+|+++.
T Consensus 143 ~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~--~~~~~~~~~~~~~-vi~l~S~SK~~~l~GlRiG~iv~ 218 (337)
T PRK03967 143 AVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFS--GKSLIGLIDEYPN-LILLRTFSKAFGLAGIRAGYAIA 218 (337)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhc--ccchHHHHhhCCC-EEEEecchHhhcchhhhheeeec
Confidence 4556778999999999999999995 799999999986432 1111111111111 24567999998744 34677765
No 350
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=97.71 E-value=0.0014 Score=58.71 Aligned_cols=207 Identities=12% Similarity=0.049 Sum_probs=103.7
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
..+|++--.....|.+-| +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++ -|.+++-...
T Consensus 226 iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~-PDivt~--gK~l~gG~Pi 302 (459)
T PRK06931 226 PAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIE-PDIIVM--SKAVGGGLPL 302 (459)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCC-CCEEEe--cccccCCcce
Confidence 445555444455566554 899999999999999999998754222211111123453 899887 6887665556
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~~~ 159 (239)
|++..++ .+ ..... . ....++ .+.+.......+.|+.+..++ ..++..++.++|.+.|+++. ...++
T Consensus 303 ~av~~~~-~~-~~~~~---~---~~~~T~-~gnpla~aaala~L~~l~~~~---l~~~~~~~G~~l~~~L~~l~~~~~~i 370 (459)
T PRK06931 303 AVLGIKK-EF-DAWQP---G---GHTGTF-RGNQLAMATGLTTLKILKEEN---LAQNAAERGEWLKAQLAELQKRYPCI 370 (459)
T ss_pred eeeeeHH-HH-hhccC---C---CCCCCC-CCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 6666543 32 21110 0 000111 122222233334455443333 44455577777777776531 11122
Q ss_pred cCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCCc
Q 048438 160 FPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237 (239)
Q Consensus 160 ~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~~ 237 (239)
... .-.++.+.+...... .+..............+.+.+.++|.++... . .+..++|+.+.--.|++
T Consensus 371 ~~vrG~Glm~giel~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-~-~~~~~l~~~Ppl~it~~ 439 (459)
T PRK06931 371 GNVRGRGLMIGIEIVDERQP---------ADAMGSYPADGELAAAIQKACFENGLLLERG-G-RNGNVVRLLPPLLITQA 439 (459)
T ss_pred EeEecCceEEEEEEccCccc---------ccccccCCccHHHHHHHHHHHHHCCcEEeec-C-CCCCEEEEECCCCcCHH
Confidence 221 223555555321100 0000000000133456777888888765321 1 12467999876655554
No 351
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=97.71 E-value=0.0019 Score=53.55 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=54.1
Q ss_pred cEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccc--cCcccccccCCCCCcceEEEcCcccCCCccc
Q 048438 5 PLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSAC--IFPEFRHFIDGVEGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~--~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g 79 (239)
.-+||++--||.||.+ +.+.+|.++|++||+++++|-|+|...- .+.+.... +..=-.+++|..|.+.--.-
T Consensus 180 ~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~---w~~NiilC~SLSK~GLPG~R 256 (417)
T COG3977 180 TGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPL---WNENIILCMSLSKLGLPGSR 256 (417)
T ss_pred cceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceeccccccc---CCCCEEEEeehhhcCCCCcc
Confidence 3478888889999986 3477788889999999999999985421 11111111 11234578999998554445
Q ss_pred ceEEEee
Q 048438 80 CCCLWAT 86 (239)
Q Consensus 80 ~g~l~~~ 86 (239)
||+++..
T Consensus 257 ~GIiIan 263 (417)
T COG3977 257 CGIIIAN 263 (417)
T ss_pred eeEEEcc
Confidence 8877753
No 352
>PRK12566 glycine dehydrogenase; Provisional
Probab=97.71 E-value=0.0017 Score=62.01 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=91.6
Q ss_pred EecCCCCcccccChhHHHHHHHHhCCEEEEeccc--ccccccCcccccccCCCCCcceEEEcCcccCCCccc-----ceE
Q 048438 10 ATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY--AGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLD-----CCC 82 (239)
Q Consensus 10 ~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~--~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g-----~g~ 82 (239)
+..-.+..|.+.++++|++++|+.|..++ +++- +.+.+.-| -.+ ++|+++.+ ++-|+.|.| +|+
T Consensus 213 ~vq~P~~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~ll~~P------ge~-GADI~vG~-~Q~fGvp~~~GGP~ag~ 283 (954)
T PRK12566 213 LLQYPDTHGEIRDLRPLIDQLHGQQALAC-VAADLLSLLVLTPP------GEL-GADVVLGS-TQRFGVPMGYGGPHAAY 283 (954)
T ss_pred EEECCCCceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhCCCCh------hhc-CCcEEeeC-CCcCCCCCCCCCCCeee
Confidence 33445789999999999999999999854 5553 22323222 112 59998554 444566644 667
Q ss_pred EEeeCcccccccccC-CCCccCC---CCceecCC------CCC-------Ch---HHHHH--HHHHhCHHHHHHHHHHHH
Q 048438 83 LWATNPEYLKNKATE-SKPVVDY---KDWQITLS------RSF-------RS---LKLWF--VIRNYGMENLRHFLRSHV 140 (239)
Q Consensus 83 l~~~~~~~l~~~~~~-~~~~~~~---~~~~~~~~------~~~-------~~---~~~~~--~l~~~g~~g~~~~~~~~~ 140 (239)
+.+++ .|.+..... -+.+.|. ..|.+... ||- .+ +++.+ .+..+|.+|++++.++.+
T Consensus 284 ~a~~~-~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~ 362 (954)
T PRK12566 284 FACRD-DYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVH 362 (954)
T ss_pred eeehH-HHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 77654 343332210 0011111 01111111 221 11 12222 235679999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEcCCCeeEEEEEE
Q 048438 141 NMARLFERLVSGDKRFEVVFPCHFAVVCFRV 171 (239)
Q Consensus 141 ~la~~l~~~l~~~~g~~~~~~~~~~iv~f~~ 171 (239)
.++.++.+.|.+ .|+++..++-.+-+.+++
T Consensus 363 ~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~~ 392 (954)
T PRK12566 363 RLTAILAAGLEA-KGIKRLNRHFFDTLTLEV 392 (954)
T ss_pred HHHHHHHHHHHh-cCCccccCCccceEEEEc
Confidence 999999999999 699988776667776766
No 353
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.71 E-value=0.0015 Score=58.52 Aligned_cols=206 Identities=12% Similarity=0.031 Sum_probs=98.7
Q ss_pred cEEEEEec-CCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438 5 PLFLCATI-GTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 5 p~~vv~t~-gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
+.+|++-- .....|.+.| ++++.++|++||+.+++|..+.+.--...-+.....++. .|.+++ -|.+++-+
T Consensus 237 iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~-PDiv~~--gKgl~gG~~ 313 (472)
T PRK08742 237 ICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVM-PDLLCL--SKGLTGGFL 313 (472)
T ss_pred eEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCC-CCEEEE--cccccCCCC
Confidence 44555543 2344466544 789999999999999999998754222211111123554 999987 68876432
Q ss_pred cceEEEeeCcccccccccCC-CCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATES-KPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
..|.+++++ +......... ...+ ....+ ..+.+.......++++.+..++ .+++..++.+++.+.++.+....
T Consensus 314 Plaav~~~~-ei~~~~~~~~~~~~~-~h~~T-~~gnpl~~Aaa~a~L~~i~~~~---l~~~~~~~g~~l~~~~~~~~~~~ 387 (472)
T PRK08742 314 PLSAVLATQ-QLYDAFLDDSRERAF-LHSHS-YTGNPLACAAALATLDIFADDD---VIARNQPTAARMTQLAAQIGEHP 387 (472)
T ss_pred CcceeeccH-HHHHHhhccCccCcc-CcCCC-CCccHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHhcCC
Confidence 456666643 3322111000 0000 00011 1122222233333455444443 34445566677766655432222
Q ss_pred EEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCC
Q 048438 158 VVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLT 235 (239)
Q Consensus 158 ~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t 235 (239)
++.+. .--++.+.+...... . ............+.+++.++|.+... .| .++|+.+--..|
T Consensus 388 ~i~dvRG~Gl~~giel~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~Gll~~~----~g-~vi~~~PpL~it 450 (472)
T PRK08742 388 HVADVRQAGMVVAFELTRGGNK---------R---TPFPPAARVGLHAYRAALARGVVLRP----LG-DVLYWMPPYCVD 450 (472)
T ss_pred CeeeEeccceEEEEEeccCccc---------c---ccCCchhHHHHHHHHHHHHCCeEEEe----cC-CEEEEECCCCCC
Confidence 22222 122455555321100 0 00000012334677778888866542 23 579988654444
Q ss_pred C
Q 048438 236 E 236 (239)
Q Consensus 236 ~ 236 (239)
+
T Consensus 451 ~ 451 (472)
T PRK08742 451 E 451 (472)
T ss_pred H
Confidence 3
No 354
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=97.64 E-value=0.0006 Score=59.13 Aligned_cols=181 Identities=11% Similarity=0.084 Sum_probs=98.9
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHH---HhCCEEEEecccccccccCcccccccCCCC--CcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAK---QFGIWVHVDAAYAGSACIFPEFRHFIDGVE--GADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~---~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~--~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++..+|.||.+.+.+++.++++ +++ ++++|.++...... .........++ .--.++.++.|.++.| .
T Consensus 152 ~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl 229 (366)
T PRK01533 152 TKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTA-KDFPETLPLLEKHKNILVLRTFSKAYGLASF 229 (366)
T ss_pred CcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcc-ccCcchhHHhccCCCEEEEeCchHHhcChHH
Confidence 345666778999999999777666654 444 67889998632211 10000011111 1235678999997644 2
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHhCCCCeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGME-NLRHFLRSHVNMARLFERLVSGDKRFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-g~~~~~~~~~~la~~l~~~l~~~~g~~ 157 (239)
-+|+++. .++++....... ..+. ...+...++...+... -.++..+...+..+++.+.+++. |++
T Consensus 230 RiG~~i~-~~~~~~~l~~~~------~~~~------~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~-g~~ 295 (366)
T PRK01533 230 RVGYAVG-HEELIEKLNVVR------LPFN------VSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN-EIP 295 (366)
T ss_pred HHhHHhC-CHHHHHHHHHhc------CCCC------cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 2565554 344433221100 0011 1223333333333222 23344445556667777777775 777
Q ss_pred EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCC
Q 048438 158 VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 158 ~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
+. +++.|-+.+++++. ..+.+.|.++|...... ..++|+++..+
T Consensus 296 ~~-~~~~nf~~~~~~~~--------------------------~~~~~~l~~~GI~Vr~~-----~~~iRis~~~~ 339 (366)
T PRK01533 296 FY-QSQTNFIFLPVENG--------------------------GEIYEACAHAGFIIRPF-----PNGVRITVGTR 339 (366)
T ss_pred cC-CCcCcEEEEeCCCH--------------------------HHHHHHHHHCCcEEccC-----CCceEEeCCCH
Confidence 54 56777666665321 15667777788776642 25799997764
No 355
>PRK06917 hypothetical protein; Provisional
Probab=97.62 E-value=0.0013 Score=58.63 Aligned_cols=211 Identities=13% Similarity=0.037 Sum_probs=102.4
Q ss_pred cEEEEEecCCCC-cccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-
Q 048438 5 PLFLCATIGTTA-ITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL- 78 (239)
Q Consensus 5 p~~vv~t~gtt~-~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~- 78 (239)
..+|++--.... -|.+.| +++|.++|++||+.+++|..+.+.--....+.....++. .|.+++ -|.+++-+
T Consensus 200 iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~-PDi~~~--gK~l~~G~~ 276 (447)
T PRK06917 200 IAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVE-PDIMTL--GKGLGAGYT 276 (447)
T ss_pred eEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCC-CCEEEe--eehhccCCc
Confidence 445555543332 345444 789999999999999999998753222211111123443 898765 79887532
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC-CeE
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK-RFE 157 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~-g~~ 157 (239)
..|.+..++ ++............. ..+ ..+.+.......++++.+..+ +..++..++.++|.+.|+++. ...
T Consensus 277 Pi~a~~~~~-~i~~~~~~~~~~~~~--~~T-~~gnpl~~aaa~a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~~~~ 349 (447)
T PRK06917 277 PIAATVVSD-RVMEPILRGSRSIMS--GHT-LSANPLSAATALAVLEYMEKH---NLPEKAAEKGEYLIKGLQKVQQQST 349 (447)
T ss_pred ceEEEEEcH-HHHHHHhccCccccc--ccC-CCCCHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356666643 333222110000000 001 112222223333445544333 345556678888888876642 122
Q ss_pred EEcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-E--ECCEeEEEEEecC
Q 048438 158 VVFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-V--LGGIYAIRFATGA 232 (239)
Q Consensus 158 ~~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~--~~g~~~lR~~~~~ 232 (239)
++... .-.++.+.+..... .........+....+.+.+.++|.+..... . -.+..++|+++--
T Consensus 350 ~i~~vrG~Gl~~~ie~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl 417 (447)
T PRK06917 350 IIGDVRGKGLLIGVEFVADKK------------TKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPM 417 (447)
T ss_pred CEEEEeecceEEEEEEeccCC------------cCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCC
Confidence 22221 12345555532110 000000012345577888888887654321 0 1124688987554
Q ss_pred CCCCc
Q 048438 233 TLTEE 237 (239)
Q Consensus 233 ~~t~~ 237 (239)
-.|++
T Consensus 418 ~it~~ 422 (447)
T PRK06917 418 TITYS 422 (447)
T ss_pred cCCHH
Confidence 44443
No 356
>PRK07483 hypothetical protein; Provisional
Probab=97.59 E-value=0.0044 Score=55.21 Aligned_cols=209 Identities=14% Similarity=0.076 Sum_probs=100.8
Q ss_pred EEEEEecCCC-CcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc-c
Q 048438 6 LFLCATIGTT-AITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL-D 79 (239)
Q Consensus 6 ~~vv~t~gtt-~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~-g 79 (239)
.+|++--..- .-|.+.| +++|.++|++||+.+++|..+.+.--...-+.....++. .|.+++ -|.+++-+ .
T Consensus 201 AAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~-PDiv~~--gK~l~gG~~P 277 (443)
T PRK07483 201 AAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVA-PDLVTI--AKGLGAGYQP 277 (443)
T ss_pred EEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCC-CCeeee--hhhhccCccc
Confidence 3444433332 3466665 899999999999999999998754222211111123444 898887 68876543 4
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeEE
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFEV 158 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~~ 158 (239)
.|.+++++ +......... ..+. ...+ ..+.+.......+.++.+..+ +..++..++.++|.+.|+++ ....+
T Consensus 278 i~av~~~~-~i~~~~~~~~-~~~~-h~~T-~~gnpl~~aaa~a~l~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~~~~ 350 (443)
T PRK07483 278 IGAVLASD-RIYDAIADGS-GFFQ-HGHT-YLGHATACAAALAVQRVIAED---GLLANVRARGEQLRARLRERLGQHPH 350 (443)
T ss_pred cEEEEEcH-HHHHHHhcCC-Cccc-cCCC-CCCCHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67777654 3322111100 0000 0001 112222223333344444333 34455557788888877642 12222
Q ss_pred EcCC--CeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEE-EECC--EeEEEEEecCC
Q 048438 159 VFPC--HFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNV-VLGG--IYAIRFATGAT 233 (239)
Q Consensus 159 ~~~~--~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~-~~~g--~~~lR~~~~~~ 233 (239)
+.+. .--++.+.+...... .. +.+. ..+....+.+.+.++|.++.... ..++ ..++|+.+---
T Consensus 351 i~~vRG~Glm~gie~~~~~~~---------~~-~~~~--~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~ 418 (443)
T PRK07483 351 VGDIRGRGLFVGVELVADRAT---------KA-PFDP--ALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFI 418 (443)
T ss_pred eeeEeecccEEEEEEeecccc---------cC-CCCc--hhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCC
Confidence 2221 122444554321100 00 0000 12344567788888887754321 1111 25789875444
Q ss_pred CCC
Q 048438 234 LTE 236 (239)
Q Consensus 234 ~t~ 236 (239)
.|+
T Consensus 419 it~ 421 (443)
T PRK07483 419 ITA 421 (443)
T ss_pred CCH
Confidence 433
No 357
>PLN02368 alanine transaminase
Probab=97.59 E-value=0.0027 Score=55.94 Aligned_cols=154 Identities=10% Similarity=-0.023 Sum_probs=83.4
Q ss_pred ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc-cc---ccccCCC----C-Ccc-eEEEcC
Q 048438 4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP-EF---RHFIDGV----E-GAD-SFSLNA 70 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~-~~---~~~~~~~----~-~~D-s~~~~~ 70 (239)
.+-+++.+.-+|.||.+.+ +++|+++|++||++++.|.+|+-....-. .+ ......+ + ... ++..++
T Consensus 210 ~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~Sf 289 (407)
T PLN02368 210 TVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTV 289 (407)
T ss_pred CeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecC
Confidence 4556677777999999877 56677789999999999999865432110 01 0011111 1 112 445689
Q ss_pred cccCC-Cc-ccceEEEe--eCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC------------HHHHHH
Q 048438 71 HKWFF-AT-LDCCCLWA--TNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG------------MENLRH 134 (239)
Q Consensus 71 hK~l~-~P-~g~g~l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g------------~~g~~~ 134 (239)
.|.++ .| .-+|.++. ..++.+....... ...+. ...+..+++...+. .+..++
T Consensus 290 SK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-----~~~~~------~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~ 358 (407)
T PLN02368 290 SKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-----SIALS------PNVSGQIFMGLMVNPPKPGDISYDQFVRESKG 358 (407)
T ss_pred CcccccCCccceEEEEEeCCCHHHHHHHHHHh-----cccCC------CCcHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Confidence 99874 23 33676664 2333333222100 00011 11122222222221 011234
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEcCCCeeEEEE
Q 048438 135 FLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169 (239)
Q Consensus 135 ~~~~~~~la~~l~~~l~~~~g~~~~~~~~~~iv~f 169 (239)
..+...+..+.+.+.|++++|+.+. +|+.+...|
T Consensus 359 ~~~~~~~rr~~~~~~L~~~~g~~~~-~P~Gafy~~ 392 (407)
T PLN02368 359 ILESLRRRARMMTDGFNSCKNVVCN-FTEGAMYSF 392 (407)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEeC-CCCeeeEec
Confidence 4566677888999999999998865 455554443
No 358
>PRK05839 hypothetical protein; Provisional
Probab=97.56 E-value=0.0032 Score=54.74 Aligned_cols=79 Identities=9% Similarity=-0.053 Sum_probs=48.7
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcccccccC--------CCCCcceEEEcCccc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFID--------GVEGADSFSLNAHKW 73 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~--------~~~~~Ds~~~~~hK~ 73 (239)
+-+|+++.-+|.||.+.+ +++|+++|+++|+++++|.+++-.... ........ ..+. =.++.++.|.
T Consensus 156 ~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~-~~~~s~~~~~~~~~~~~~~~-vi~~~SfSK~ 233 (374)
T PRK05839 156 VDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYEN-TPPPSLLEASILVGNESFKN-VLVINSISKR 233 (374)
T ss_pred ccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccC-CCCCCHhhhhcccCccccCc-EEEEeccccc
Confidence 345566677899999776 566677789999999999998743210 00100010 0011 1567899997
Q ss_pred CCCc-ccceEEEe
Q 048438 74 FFAT-LDCCCLWA 85 (239)
Q Consensus 74 l~~P-~g~g~l~~ 85 (239)
++.| .-+|.++.
T Consensus 234 ~~~~GlRiG~ii~ 246 (374)
T PRK05839 234 SSAPGLRSGFIAG 246 (374)
T ss_pred cCCccceeEEEec
Confidence 5444 44666665
No 359
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=97.55 E-value=0.002 Score=56.22 Aligned_cols=157 Identities=11% Similarity=0.011 Sum_probs=92.3
Q ss_pred CccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcc
Q 048438 3 LIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATL 78 (239)
Q Consensus 3 ~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~ 78 (239)
.....|++--.-.+.|.+-| +++|.++|+++|+.|+.|....+.-+..--.+. .-++. .|..+ +-|.+++-.
T Consensus 199 ~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~-~~gi~-PDltt--lGKiIGGGl 274 (432)
T COG0001 199 DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQG-YYGVE-PDLTT--LGKIIGGGL 274 (432)
T ss_pred CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCccccc-ccCcC-cchhh--hhhhhcCCc
Confidence 34567777777788888888 678999999999999999988776554321111 23444 78765 458888877
Q ss_pred cceEEEeeCcccccccccCCCCccCCCCceecCCC-CCChHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-
Q 048438 79 DCCCLWATNPEYLKNKATESKPVVDYKDWQITLSR-SFRSLKLWF---VIRNYGMENLRHFLRSHVNMARLFERLVSGD- 153 (239)
Q Consensus 79 g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~- 153 (239)
.+|++-. +.+++....+.. +..+.|+ ....+.+.+ .++.+-.+ +...++..+++++|++.|++.
T Consensus 275 P~ga~gG-r~eiM~~~~p~g--------~vyqaGT~sgnplamaAG~atl~~l~~~--~~~y~~l~~~~~~L~~gl~~~~ 343 (432)
T COG0001 275 PIGAFGG-RAEIMEQLAPLG--------PVYQAGTLSGNPLAMAAGLATLEELMTE--EGVYERLDALGERLAEGLRAAA 343 (432)
T ss_pred ceeeecc-HHHHHhhhCCCC--------CccccCCCCCcHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHH
Confidence 7777654 346665443221 1112222 223333333 34443321 113445556666666666542
Q ss_pred --CCeEEEcCCCeeEEEEEEcCC
Q 048438 154 --KRFEVVFPCHFAVVCFRVSPL 174 (239)
Q Consensus 154 --~g~~~~~~~~~~iv~f~~~~~ 174 (239)
.|+.+.....-+++++.+.+.
T Consensus 344 ~~~g~~~~v~~~gsm~~i~F~~~ 366 (432)
T COG0001 344 ERHGIPLTVNRVGSMFGIFFTEE 366 (432)
T ss_pred HHhCCCeEEeeecceEEEEecCC
Confidence 255554444456777777653
No 360
>PLN02672 methionine S-methyltransferase
Probab=97.49 E-value=0.003 Score=61.49 Aligned_cols=210 Identities=9% Similarity=0.069 Sum_probs=99.8
Q ss_pred EEEEecCC-CCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccc-----ccccCCCCC---c-c-eEEEcCcc
Q 048438 7 FLCATIGT-TAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEF-----RHFIDGVEG---A-D-SFSLNAHK 72 (239)
Q Consensus 7 ~vv~t~gt-t~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~-----~~~~~~~~~---~-D-s~~~~~hK 72 (239)
+|+++.-+ |.||.+.+ +++|+++|++||+++++|.+|+.-....+.. ......... . . ++..++.|
T Consensus 831 ~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSK 910 (1082)
T PLN02672 831 WVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLST 910 (1082)
T ss_pred EEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHH
Confidence 34444444 99999765 6677888999999999999997433211110 000111100 0 1 24558886
Q ss_pred cCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHh----C--HHHHHHHHHHHHHHHHH
Q 048438 73 WFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNY----G--MENLRHFLRSHVNMARL 145 (239)
Q Consensus 73 ~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----g--~~g~~~~~~~~~~la~~ 145 (239)
.++.| .-+|+++..++.++...... .. .. .......+....++..+ + .+.+++..+...+..++
T Consensus 911 kf~lpGLRIGylIap~~eLi~~l~~~----~~---~s--~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~ 981 (1082)
T PLN02672 911 ELLSGGHEFGFLALNDSVLIDAFHSA----PG---LS--RPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAER 981 (1082)
T ss_pred hhccHHHHheeEEeCCHHHHHHHHHh----hh---hc--CCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 65554 33777776433333322110 00 00 00000111222222211 1 12344455556677888
Q ss_pred HHHHHhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE-CCEe
Q 048438 146 FERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL-GGIY 224 (239)
Q Consensus 146 l~~~l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~-~g~~ 224 (239)
+.+.|++. |+++. +|+.+...+.-.+..... ..+.. .....+..+.-...+.+.|.++..+.+.+..+ ....
T Consensus 982 L~e~L~~~-Gi~v~-~PeGGFfLwl~l~~~l~~-~~~~~----~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~g 1054 (1082)
T PLN02672 982 LKETLEAC-GWDVL-EPQGGISMVAKPSAYLGK-TVKLK----SIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIPG 1054 (1082)
T ss_pred HHHHHHHC-CCeEe-cCCcEEEEEEEccccccc-ccccc----ccccccccCCCHHHHHHHHHHcCCEEEecCcccCCCC
Confidence 88999886 88765 566665555422110000 00000 00000000001236777777664444444333 3357
Q ss_pred EEEEEecC
Q 048438 225 AIRFATGA 232 (239)
Q Consensus 225 ~lR~~~~~ 232 (239)
++|+++..
T Consensus 1055 ~~RIsfa~ 1062 (1082)
T PLN02672 1055 YCRFSFAL 1062 (1082)
T ss_pred eEEEEecC
Confidence 89999875
No 361
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=97.49 E-value=0.0002 Score=61.04 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=40.0
Q ss_pred ccChhHHHHHHHHhCCEEEEecccccccccCc--------ccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcccc
Q 048438 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFP--------EFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYL 91 (239)
Q Consensus 20 i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~--------~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l 91 (239)
--+++++++++|+|++++++|.+-|.- .++. ..+..++ .++|.++||+-|.|++|. +|+++-+ .+++
T Consensus 156 ~~~~~el~~la~~~~lp~i~DlgsG~l-~dl~~~gl~~Ep~v~~~~~--~GaDlV~fSGdKlLGGPQ-aGiI~Gk-k~lI 230 (367)
T PF03841_consen 156 EVSLEELAELAKEHGLPVIVDLGSGLL-VDLSPYGLPDEPTVQEYLA--AGADLVTFSGDKLLGGPQ-AGIIVGK-KELI 230 (367)
T ss_dssp -----HHHHHHHHHT--EEEE-TTHHH-HHHHTT----------CCC--CT-SEEEEETTSSSSS-S--EEEEEE-HHHH
T ss_pred cccHHHHHHHHhhcCCcEEEECCCCCC-cCcccccCccccHHHHHhh--cCCCEEEEECCCcCCCCC-eEEEEeC-HHHH
Confidence 347999999999999999999976432 1111 1111222 269999999999999998 6877764 4565
Q ss_pred ccc
Q 048438 92 KNK 94 (239)
Q Consensus 92 ~~~ 94 (239)
...
T Consensus 231 ~~l 233 (367)
T PF03841_consen 231 EKL 233 (367)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 362
>PRK07046 aminotransferase; Validated
Probab=97.41 E-value=0.0088 Score=53.45 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=50.7
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccc----cccccCcccccccCCCCCcceEEEcCcccCCC
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYA----GSACIFPEFRHFIDGVEGADSFSLNAHKWFFA 76 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~----~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~ 76 (239)
..+|++--.....|.+-| +++|.++|++||+.+++|..+. .|-. .. ..++. .|.+++ -|.+++
T Consensus 219 vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~-----~~-~~gv~-PDi~t~--gK~lgg 289 (453)
T PRK07046 219 VAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGY-----TR-AHGLE-PDFLVV--GKPIAG 289 (453)
T ss_pred eEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcch-----hH-HhCCC-ccceee--hhhhcC
Confidence 345555555555677766 7999999999999999999984 2211 11 22554 898875 788876
Q ss_pred cccceEEEeeC
Q 048438 77 TLDCCCLWATN 87 (239)
Q Consensus 77 P~g~g~l~~~~ 87 (239)
-..+|++..++
T Consensus 290 G~Pi~av~g~~ 300 (453)
T PRK07046 290 GVPCAVYGFSA 300 (453)
T ss_pred CCcceeeeehH
Confidence 56678777643
No 363
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=97.35 E-value=0.0066 Score=52.67 Aligned_cols=78 Identities=14% Similarity=-0.021 Sum_probs=49.8
Q ss_pred cEEEEEecCCCCccccc-C---hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVD-P---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~-p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+.+|++.......|.+- | +++|.++|++||+.++.|.+|.+. -....+.....++. .|.+++ -|.+++-...
T Consensus 163 ~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~~~a~~~~gv~-PDiv~~--gK~lggG~P~ 238 (364)
T PRK04013 163 TAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVE-PDIVTM--GKGIGNGVPV 238 (364)
T ss_pred cEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCchhHHHhcCCC-CCEEEe--cccccCCcee
Confidence 34555555544455544 3 999999999999999999998854 21111111123443 888877 6887664556
Q ss_pred eEEEee
Q 048438 81 CCLWAT 86 (239)
Q Consensus 81 g~l~~~ 86 (239)
|.++.+
T Consensus 239 ~a~~~~ 244 (364)
T PRK04013 239 SLTLTN 244 (364)
T ss_pred EEEEec
Confidence 666654
No 364
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=97.34 E-value=0.003 Score=54.06 Aligned_cols=203 Identities=12% Similarity=0.006 Sum_probs=109.4
Q ss_pred cEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc
Q 048438 5 PLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC 80 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~ 80 (239)
+...++-...-.-|++.+ +++..++|+++|..++.|.+|.+..-....|.-.-.++ -.|.++ .-|+++.-...
T Consensus 213 vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v-~PDIvT--mAKgiGnG~Pl 289 (442)
T KOG1404|consen 213 VAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGV-VPDIVT--MAKGIGNGFPL 289 (442)
T ss_pred eeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCC-CccHHH--HHhhccCCCcc
Confidence 344444444444577776 78999999999999999999887544332111001222 256554 56888877777
Q ss_pred eEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEE
Q 048438 81 CCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD-KRFEVV 159 (239)
Q Consensus 81 g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~-~g~~~~ 159 (239)
|.++.. ++...-..+.. . .+...++.+..+..-.+.|+-+-++. ..++..+...||.+.|.++ .+.+++
T Consensus 290 ~AVvtt-~EIa~v~~~~~-~-----~fnTyggnP~a~avg~aVL~Vikee~---LqE~aa~vG~yl~~~l~~l~d~h~iI 359 (442)
T KOG1404|consen 290 GAVVTT-PEIADVLNQKS-S-----HFNTYGGNPVACAVGLAVLKVIKEEN---LQENAAEVGSYLLEKLAALKDKHPII 359 (442)
T ss_pred eeeecC-HHHHHHHHhcc-c-----cccccCCCchhHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhhcCCce
Confidence 777763 33221111100 0 12222344443333344555554554 4455569999999999875 346666
Q ss_pred cCCC--eeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEECCEeEEEEEecCCCCC
Q 048438 160 FPCH--FAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTE 236 (239)
Q Consensus 160 ~~~~--~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~g~~~lR~~~~~~~t~ 236 (239)
++.+ --|+-..+..... ...+.. ......+.+++.+.|.+. ....+.|. ++|+++----|.
T Consensus 360 GdVRG~GLm~GvE~V~dk~----------~~~pp~----~~~~~~i~~~cke~Gvlv-g~g~i~G~-vfriaPPlciT~ 422 (442)
T KOG1404|consen 360 GDVRGRGLMLGVELVSDKS----------EPKPPA----TAEGAVIGEQCKELGVLV-GKGGIHGN-VFRIAPPLCITK 422 (442)
T ss_pred eecccceeEEEEEEecccC----------CCCCcc----hHHHHHHHHHHHHhCeee-ecccccce-EEEecCCeeccH
Confidence 6643 1233333332110 000001 233346677777766654 43334455 889876544443
No 365
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=97.34 E-value=0.0043 Score=53.42 Aligned_cols=206 Identities=17% Similarity=0.101 Sum_probs=108.8
Q ss_pred CCccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccccc---CCCC-Ccce--EEEcCcc
Q 048438 2 GLIPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFI---DGVE-GADS--FSLNAHK 72 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~---~~~~-~~Ds--~~~~~hK 72 (239)
|...--|++|--+|..|++.+ +..+...|+++++.+++|..+++....-.++.... .... ..|. ++.+..|
T Consensus 224 ~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSK 303 (471)
T KOG0256|consen 224 GLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSK 303 (471)
T ss_pred CCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEecc
Confidence 445557888999999999877 45556667899999999999988766544443311 1110 1233 5778999
Q ss_pred cCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHHH
Q 048438 73 WFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI--RNYGMENLRHFLRSHVNMARLFERL 149 (239)
Q Consensus 73 ~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~g~~g~~~~~~~~~~la~~l~~~ 149 (239)
=++.| .-.|++|..+.........- ..+.+-.+ .....+...| +.+..+=+++..++....-+++.++
T Consensus 304 D~GlpGfRvGviYS~ne~VvsaA~km-------ssf~~vSs--~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~g 374 (471)
T KOG0256|consen 304 DFGLPGFRVGVIYSNNEDVVSAATKM-------SSFGLVSS--QTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEG 374 (471)
T ss_pred ccCCCceEEEEEEecChHHHHHHHHH-------hhccCCcH--HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88776 23677776554332222100 00110000 0000111111 1122223344444555666788999
Q ss_pred HhCCCCeEEEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEEE---CCEeEE
Q 048438 150 VSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVL---GGIYAI 226 (239)
Q Consensus 150 l~~~~g~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~---~g~~~l 226 (239)
|++. |+..+ +...++.|+.=-..-+. +...-.++ .+.+++...-++.+++... ...+|+
T Consensus 375 Lk~l-gI~cl-~s~AGlF~wvDlr~lL~--------------s~tfe~El--~Lw~~i~~~vklnlSpG~s~~C~EpGWF 436 (471)
T KOG0256|consen 375 LKAL-GIPCL-KSNAGLFCWVDLRKLLT--------------SLTFEGEL--ELWERILDNVKLNLSPGSSCHCHEPGWF 436 (471)
T ss_pred HHhc-CCcee-ecCCeeEEEEEhHHhcC--------------cCChHHHH--HHHHHHHHhhccccCCCCcceecCCCeE
Confidence 9986 88877 44566655542111110 00001112 4455555443444444221 245799
Q ss_pred EEEecCCC
Q 048438 227 RFATGATL 234 (239)
Q Consensus 227 R~~~~~~~ 234 (239)
|+|+.|..
T Consensus 437 RvcFAn~~ 444 (471)
T KOG0256|consen 437 RVCFANMS 444 (471)
T ss_pred EEEeccCC
Confidence 99987653
No 366
>PLN02397 aspartate transaminase
Probab=97.30 E-value=0.0041 Score=55.06 Aligned_cols=80 Identities=13% Similarity=-0.034 Sum_probs=50.1
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc--cccc--ccCCCCCcceEEEcCcccCCCc
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP--EFRH--FIDGVEGADSFSLNAHKWFFAT 77 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~--~~~~~~~~Ds~~~~~hK~l~~P 77 (239)
..+++.+.-+|.||.+.+ +++|+++|++||+++++|.+|......-. .... .......-=.++.++.|.++.|
T Consensus 195 ~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~ 274 (423)
T PLN02397 195 SFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLY 274 (423)
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCc
Confidence 467777778899999866 56678889999999999999865432100 0000 0111110114566999997643
Q ss_pred -ccceEEE
Q 048438 78 -LDCCCLW 84 (239)
Q Consensus 78 -~g~g~l~ 84 (239)
.-+|.++
T Consensus 275 G~RvG~~v 282 (423)
T PLN02397 275 GERVGALS 282 (423)
T ss_pred cccceEEE
Confidence 3367764
No 367
>PTZ00376 aspartate aminotransferase; Provisional
Probab=97.29 E-value=0.0032 Score=55.32 Aligned_cols=79 Identities=15% Similarity=-0.010 Sum_probs=50.4
Q ss_pred EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCc--cccc--ccCCCCCcceEEEcCcccCCCc-
Q 048438 6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFP--EFRH--FIDGVEGADSFSLNAHKWFFAT- 77 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~--~~~~--~~~~~~~~Ds~~~~~hK~l~~P- 77 (239)
.+++...-+|.||.+.+ +++|+++|++|++++++|.++........ .... .......-=+++.|+.|.++.|
T Consensus 178 ~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G 257 (404)
T PTZ00376 178 VVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYG 257 (404)
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccc
Confidence 56777888899999766 56778889999999999999864332110 0000 0111110115677999998754
Q ss_pred ccceEEE
Q 048438 78 LDCCCLW 84 (239)
Q Consensus 78 ~g~g~l~ 84 (239)
.-+|+++
T Consensus 258 lRvG~~~ 264 (404)
T PTZ00376 258 ERIGALH 264 (404)
T ss_pred cccceEE
Confidence 4477764
No 368
>PRK08637 hypothetical protein; Provisional
Probab=97.29 E-value=0.018 Score=50.27 Aligned_cols=81 Identities=11% Similarity=0.000 Sum_probs=46.7
Q ss_pred EEEEEecCCCCcccccC---hhHHHHHHHH-----hCCEEEEecccccccccCccccc---ccCCC-CCcceEE-EcCcc
Q 048438 6 LFLCATIGTTAITAVDP---LKPLCDVAKQ-----FGIWVHVDAAYAGSACIFPEFRH---FIDGV-EGADSFS-LNAHK 72 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~-----~gi~lhvD~A~~~~~~~~~~~~~---~~~~~-~~~Ds~~-~~~hK 72 (239)
.+++.+.-+|.||.+.+ +++|+++|++ |++++++|.++.-....-..... ...+. +.+-++. .++.|
T Consensus 148 ~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK 227 (388)
T PRK08637 148 VIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATK 227 (388)
T ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccc
Confidence 44555666899998766 5666676665 89999999998643221111100 01111 1232332 38999
Q ss_pred cCCCc-ccceEEEee
Q 048438 73 WFFAT-LDCCCLWAT 86 (239)
Q Consensus 73 ~l~~P-~g~g~l~~~ 86 (239)
.++.| .=+|.+++.
T Consensus 228 ~~~~pGlRlG~~~~~ 242 (388)
T PRK08637 228 EEFVWGFRVGFITFG 242 (388)
T ss_pred cCCCcccceEEEEEc
Confidence 75555 337777753
No 369
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=97.24 E-value=0.012 Score=52.33 Aligned_cols=78 Identities=12% Similarity=-0.021 Sum_probs=45.8
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLW 84 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~ 84 (239)
+.+|++-....+.+...++++|.++|++||+.+++|.+|.+... .........++. .|.++ .-|.+++-...|.+.
T Consensus 188 ~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~-~~~g~~~~~gv~-PDi~t--~gK~lggG~p~~av~ 263 (431)
T PRK06209 188 IACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRW-HMRGAQKLYGIV-PDLSC--FGKALGNGFAVSALA 263 (431)
T ss_pred EEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCc-CcchhhHHhCCC-cceee--ehhhhcCCcccEEEE
Confidence 33444433333333344499999999999999999999865422 110000012443 78755 579987633355566
Q ss_pred ee
Q 048438 85 AT 86 (239)
Q Consensus 85 ~~ 86 (239)
.+
T Consensus 264 ~~ 265 (431)
T PRK06209 264 GK 265 (431)
T ss_pred EH
Confidence 54
No 370
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=97.24 E-value=0.013 Score=52.48 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=106.0
Q ss_pred cEEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccCcccccccCCC--CCcceEEEcCcccCCCccc
Q 048438 5 PLFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV--EGADSFSLNAHKWFFATLD 79 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~--~~~Ds~~~~~hK~l~~P~g 79 (239)
-++.+.....|.||...++ ++|.++|++|++|++=|..++-....-..... +..+ .+==++..++.|.+..-..
T Consensus 228 k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~-l~~ld~~~rViy~gSFSK~l~PglR 306 (459)
T COG1167 228 KAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPP-LKALDAPGRVIYLGSFSKTLAPGLR 306 (459)
T ss_pred cEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCC-hHhhCCCCCEEEEeeehhhcccccc
Confidence 3566666778999999887 56999999999999999988754432211110 1111 1234678899999886677
Q ss_pred ceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhCCCC-e
Q 048438 80 CCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG--MENLRHFLRSHVNMARLFERLVSGDKR-F 156 (239)
Q Consensus 80 ~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~g~~~~~~~~~~la~~l~~~l~~~~g-~ 156 (239)
+|.+... +.++....... ...+ ..+..+....+...+. -| ..-+++..+...+..+.+.+.|++..+ .
T Consensus 307 lG~vv~p-~~~~~~~~~~k-~~~~------~~~s~~~Q~~la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~ 377 (459)
T COG1167 307 LGYVVAP-PELIEKLLRLK-QAAD------LGPSSLSQAALAAFLL-SGHYDRHLRRLRREYARRRDALLEALAEYLPEL 377 (459)
T ss_pred eeeeeCC-HHHHHHHHHHH-HHhc------CCCChHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7777763 23332221100 0000 0011111122222233 22 122333333344455666677766532 2
Q ss_pred EEEcCCCee-EEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE-EEEEC----CEeEEEEEe
Q 048438 157 EVVFPCHFA-VVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT-NVVLG----GIYAIRFAT 230 (239)
Q Consensus 157 ~~~~~~~~~-iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~----g~~~lR~~~ 230 (239)
..+..|..+ -+..++++.- + ...+.++..++|..+.. ..... ....+|+++
T Consensus 378 ~~~~~p~gG~flwl~l~~~~---------------------~--~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~ 434 (459)
T COG1167 378 ATWTRPEGGLFLWLELPEGI---------------------D--ARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSF 434 (459)
T ss_pred eeeecCCceEEEEEEcCCCC---------------------C--HHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEc
Confidence 233344444 3444554421 1 12566667777777665 33321 346899998
Q ss_pred cCCCCC
Q 048438 231 GATLTE 236 (239)
Q Consensus 231 ~~~~t~ 236 (239)
.++..+
T Consensus 435 s~~~~e 440 (459)
T COG1167 435 SSPSEE 440 (459)
T ss_pred CCCCHH
Confidence 877643
No 371
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=97.20 E-value=0.0078 Score=52.68 Aligned_cols=80 Identities=16% Similarity=0.005 Sum_probs=50.8
Q ss_pred EEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCcc-ccc--ccCCCCCcceEEEcCcccCCC-cc
Q 048438 6 LFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPE-FRH--FIDGVEGADSFSLNAHKWFFA-TL 78 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~-~~~--~~~~~~~~Ds~~~~~hK~l~~-P~ 78 (239)
.+++.+..+|.||.+.+ +++|+++|++|+++++.|.++......... ... .+.+...-=+++.|+.|.++. -.
T Consensus 174 ~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~Gl 253 (396)
T PRK09257 174 VVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGE 253 (396)
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccc
Confidence 56666778899999766 577888899999999999998653211000 000 011111012567899999764 24
Q ss_pred cceEEEe
Q 048438 79 DCCCLWA 85 (239)
Q Consensus 79 g~g~l~~ 85 (239)
-+|++++
T Consensus 254 RiG~~~~ 260 (396)
T PRK09257 254 RVGALSV 260 (396)
T ss_pred cceeEEE
Confidence 4677663
No 372
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=97.19 E-value=0.028 Score=48.14 Aligned_cols=210 Identities=11% Similarity=0.050 Sum_probs=114.1
Q ss_pred ccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEecccccccccCcccc--cccCCCCCcceEEE-cCcccCCCc
Q 048438 4 IPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR--HFIDGVEGADSFSL-NAHKWFFAT 77 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~--~~~~~~~~~Ds~~~-~~hK~l~~P 77 (239)
..+++++.--+|..|.+ +-|++|+++|+++|+.++-|..++=.......+- ..+.. .+-+++. +..|....|
T Consensus 199 NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fss--iVPVitlggisKrW~VP 276 (447)
T KOG0259|consen 199 NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSS--IVPVITLGGISKRWIVP 276 (447)
T ss_pred CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccc--cCceEeecccccccccC
Confidence 35677777778888885 5599999999999999999998753322111111 01222 2555654 567766666
Q ss_pred -ccceEEEeeCccc-ccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 048438 78 -LDCCCLWATNPEY-LKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKR 155 (239)
Q Consensus 78 -~g~g~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~g 155 (239)
.-.|.+.+.++.- +.....-. +..++.+......+ +-..++-..|..--.+=+.....-....++...+.|+++|+
T Consensus 277 GWRlGWi~~hD~~gvf~~~~~~q-~~~~~~~~~~~p~T-iiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~ 354 (447)
T KOG0259|consen 277 GWRLGWIALHDPRGVFRDTKVVQ-GIKNFLDIIPGPAT-IIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPC 354 (447)
T ss_pred CceeeeEEEecccccccchHHHH-HHHHHHhccCCccH-hHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence 3367777655421 11110000 00000000000000 11122223344444566677777788899999999999999
Q ss_pred eEEEcCCCeeEEE-EEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhc-CcEEEEEEEECCEeEEEEEecCC
Q 048438 156 FEVVFPCHFAVVC-FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINAS-GKAYMTNVVLGGIYAIRFATGAT 233 (239)
Q Consensus 156 ~~~~~~~~~~iv~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~g~~~lR~~~~~~ 233 (239)
+.....|+..+-. +.+.-. .. ++..++ ..++.+|.++ ..+.++.+.+.-++|+|+++.-+
T Consensus 355 l~cp~kPeg~mylmv~l~~s-~~---------~~~~dD--------~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~i~~~ 416 (447)
T KOG0259|consen 355 LTCPVKPEGCMYLMVKLNLS-LF---------PDIEDD--------VDFCQKLAREESVICLPGQAFGLKNWLRIVITVE 416 (447)
T ss_pred cccCcCCCcceEEEeccchh-hh---------cccccc--------HHHHHHHhhhcceEEeccccccCCCeEEEEEccC
Confidence 9865555543321 111100 00 000111 1455555444 44566667776789999998765
Q ss_pred CC
Q 048438 234 LT 235 (239)
Q Consensus 234 ~t 235 (239)
..
T Consensus 417 ~~ 418 (447)
T KOG0259|consen 417 EE 418 (447)
T ss_pred hH
Confidence 43
No 373
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=97.13 E-value=0.024 Score=54.17 Aligned_cols=81 Identities=17% Similarity=0.005 Sum_probs=51.3
Q ss_pred ccEEEEEecC-CCCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-
Q 048438 4 IPLFLCATIG-TTAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT- 77 (239)
Q Consensus 4 ~p~~vv~t~g-tt~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P- 77 (239)
...+|++--. ...-|.+.| +++|.++|++||+.+++|..+.+..-....+.....++. .|.++++ |.|.+-
T Consensus 584 ~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~-PDIi~~g--KgLtgG~ 660 (817)
T PLN02974 584 HIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK-PDIACYA--KLLTGGL 660 (817)
T ss_pred CEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC-CCEEeec--ccccCCC
Confidence 3445555442 233466655 799999999999999999998765332222211133443 8988864 887654
Q ss_pred ccceEEEeeC
Q 048438 78 LDCCCLWATN 87 (239)
Q Consensus 78 ~g~g~l~~~~ 87 (239)
...|.+++++
T Consensus 661 ~Plaa~l~~~ 670 (817)
T PLN02974 661 VPLAATLATE 670 (817)
T ss_pred CccEEEEEcH
Confidence 2467777754
No 374
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0042 Score=56.44 Aligned_cols=146 Identities=20% Similarity=0.247 Sum_probs=87.9
Q ss_pred EEEEecCCCCcccccC-hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccc-----
Q 048438 7 FLCATIGTTAITAVDP-LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDC----- 80 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~p-l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~----- 80 (239)
++.+|.-+| .|.+.| |++++++.|+||--+.+|||-.-.++-+.. .|--++|+--.+.||.++.|-|.
T Consensus 683 a~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~-----pGd~GaDV~HLNLHKTFcIPHGGGGPg~ 756 (1001)
T KOG2040|consen 683 ALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCR-----PGDIGADVCHLNLHKTFCIPHGGGGPGM 756 (1001)
T ss_pred eeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccC-----CccccccceeecccceeeecCCCCCCCC
Confidence 444555555 677765 999999999999999999974332221211 11124999999999999888553
Q ss_pred eEEEeeC--cccccccccCCCC-ccCCCCceecCCCCCCh---HH-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438 81 CCLWATN--PEYLKNKATESKP-VVDYKDWQITLSRSFRS---LK-LWFVIRNYGMENLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 81 g~l~~~~--~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~-~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
|-+-|++ ..||..-..-... .-+.....--.+-++++ ++ .|+.++.+|..|+...-+-..-+++|+.++|++.
T Consensus 757 gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h 836 (1001)
T KOG2040|consen 757 GPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH 836 (1001)
T ss_pred CccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc
Confidence 4444432 1222211100000 00000011111122222 22 4778999999999888888888999999999874
Q ss_pred CCeEEEc
Q 048438 154 KRFEVVF 160 (239)
Q Consensus 154 ~g~~~~~ 160 (239)
.+++.
T Consensus 837 --Ykil~ 841 (1001)
T KOG2040|consen 837 --YKILF 841 (1001)
T ss_pred --cceeE
Confidence 45443
No 375
>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.00015 Score=58.78 Aligned_cols=121 Identities=15% Similarity=0.154 Sum_probs=79.0
Q ss_pred ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEeeCcccccccccCCC
Q 048438 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESK 99 (239)
Q Consensus 20 i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~~~~~l~~~~~~~~ 99 (239)
-|.+++|+.||..|+++-+|.-|+|.-.-.+-..-.......++|.++-+.-|.+..|.|.+++..-+..++.....
T Consensus 173 pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~iq~iak--- 249 (432)
T KOG3843|consen 173 PDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFIQEIAK--- 249 (432)
T ss_pred CchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHHHHHHHH---
Confidence 68899999999999999999999986432211000001223469999999999999999876654333344443321
Q ss_pred CccCCCCceecCCCC--CChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC
Q 048438 100 PVVDYKDWQITLSRS--FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG 152 (239)
Q Consensus 100 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~ 152 (239)
...||. ..++-+...+-.+|..++.+......++--+++..+.+
T Consensus 250 ---------~ypgrasa~ps~dllitll~~gqn~f~e~~~eqkemf~~l~~ki~~ 295 (432)
T KOG3843|consen 250 ---------MYPGRASASPSLDLLITLLSLGQNAFKELFGEQKEMFLKLRNKIIK 295 (432)
T ss_pred ---------hCCCccccCccHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112332 23355666677788888888777766766666666644
No 376
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=96.76 E-value=0.029 Score=49.53 Aligned_cols=177 Identities=10% Similarity=0.061 Sum_probs=86.4
Q ss_pred cccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-cccceEEEeeCcccc
Q 048438 17 ITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-TLDCCCLWATNPEYL 91 (239)
Q Consensus 17 ~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g~g~l~~~~~~~l 91 (239)
.|.+.| ++++.++|++|||.|+.|..-.++--...-+.....++. .|.+++ -|.|.+ -...|.+++++. ..
T Consensus 228 gG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~-PDi~~~--aKGLT~GY~Pl~a~l~~~~-I~ 303 (449)
T COG0161 228 GGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIV-PDILCL--AKGLTGGYLPLSAVLTSDR-IY 303 (449)
T ss_pred CCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCC-CCeeee--cccccccchhhHhHhhhHH-HH
Confidence 566665 799999999999999999964432111111111123443 888876 477643 122344555432 11
Q ss_pred cccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEcCCC-ee-EEE
Q 048438 92 KNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSG-DKRFEVVFPCH-FA-VVC 168 (239)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~-~~g~~~~~~~~-~~-iv~ 168 (239)
..........+. +.+++. +.+..+....+.|+.+-.++ .+++..++..+|.+.|++ +.+...+.+.+ .+ |..
T Consensus 304 ~~~~~~~~~~f~-HG~TYs-ghPlacAaAla~L~i~e~e~---l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~ 378 (449)
T COG0161 304 EAFSDGDAGAFM-HGHTYS-GNPLACAAALANLDILEEED---LLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGA 378 (449)
T ss_pred HHHhcccCCeec-cCCccc-cCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEE
Confidence 111111001110 112211 22222222223344444444 444555899999999987 44333444432 23 444
Q ss_pred EEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEE
Q 048438 169 FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMT 216 (239)
Q Consensus 169 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~ 216 (239)
+.+..+... ..+ .-.+...++.+...++|.+..+
T Consensus 379 iElv~d~~t------------~~~--f~~~~~~~~~~~~~e~Gl~iRp 412 (449)
T COG0161 379 IELVADKAT------------KTP--FEARVGARVRAAALERGLLIRP 412 (449)
T ss_pred EEEeccccc------------ccc--hhhhHHHHHHHHHHHCCeEEee
Confidence 455432110 000 0134445677777778777654
No 377
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0076 Score=52.01 Aligned_cols=161 Identities=10% Similarity=0.001 Sum_probs=89.2
Q ss_pred ccEEEEEecCCCCcccccC---hhHHHHHHHHhCCEEEEecccccccccCccccc--ccCCCCCcceEEEcCcccCCCc-
Q 048438 4 IPLFLCATIGTTAITAVDP---LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH--FIDGVEGADSFSLNAHKWFFAT- 77 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~--~~~~~~~~Ds~~~~~hK~l~~P- 77 (239)
++-+|+++.-+|.+|.+.+ |++|+++|++||++++.|.++.-....-.++-. .+.++-..-.=+.|+.|.++..
T Consensus 172 kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TG 251 (420)
T KOG0257|consen 172 KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTG 251 (420)
T ss_pred CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeee
Confidence 3567888999999999876 889999999999999999998644332221110 0122222334466888986542
Q ss_pred ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCCh---HHHHHHH--HHhCH-HHHHHHHHHHHHHHHHHHHHHh
Q 048438 78 LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRS---LKLWFVI--RNYGM-ENLRHFLRSHVNMARLFERLVS 151 (239)
Q Consensus 78 ~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l--~~~g~-~g~~~~~~~~~~la~~l~~~l~ 151 (239)
.=.|.++. .+..+.....- ..+..+.+.+.+.. .++...+ ...+. .-+++..+...+..+.+.+.|.
T Consensus 252 WrlGW~ig-p~~L~~~~~~v------h~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~ 324 (420)
T KOG0257|consen 252 WRLGWAIG-PKHLYSALFPV------HQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALE 324 (420)
T ss_pred eeeeeeec-hHHhhhhHHHH------hhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 11344443 22222221110 00112222333211 1111111 11121 2334477778888999999999
Q ss_pred CCCCeEEEcCCCeeEEEEEEc
Q 048438 152 GDKRFEVVFPCHFAVVCFRVS 172 (239)
Q Consensus 152 ~~~g~~~~~~~~~~iv~f~~~ 172 (239)
++ |+++..+...--+...++
T Consensus 325 ~l-g~~v~~p~gayyl~adfs 344 (420)
T KOG0257|consen 325 EL-GLKVTGPEGAYYLWADFS 344 (420)
T ss_pred hc-CCccccCCCceEEEEecc
Confidence 98 999887765443333443
No 378
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.029 Score=47.27 Aligned_cols=126 Identities=10% Similarity=0.080 Sum_probs=69.9
Q ss_pred CCcccccC----hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCC-cccceEEEeeCcc
Q 048438 15 TAITAVDP----LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA-TLDCCCLWATNPE 89 (239)
Q Consensus 15 t~~G~i~p----l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~-P~g~g~l~~~~~~ 89 (239)
-+-|.+-| +++..++|++|+++++.|..|.+-.-...-+....+.+ ..|.+.+. |.|.+ -+..+.++..+ +
T Consensus 218 GEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env-~PDivilg--KalSGG~~Pvsavl~~~-~ 293 (427)
T KOG1402|consen 218 GEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENV-RPDIVILG--KALSGGVYPVSAVLADD-D 293 (427)
T ss_pred cccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhc-CCCeEEEe--ccccCCeeeeEEEEecH-H
Confidence 35666665 78999999999999999999887543322111112333 37887764 55533 22233344433 2
Q ss_pred cccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 90 YLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
......+.. ..+..++.+..+.-..++|..+-+ ++..+++..|...|+++|.+++
T Consensus 294 im~~~~pge-------HgsTyggNpLg~~vaiAalevi~e---ekL~era~~lG~~l~~~L~~l~ 348 (427)
T KOG1402|consen 294 IMLNIKPGE-------HGSTYGGNPLGCAVAIAALEVIVE---EKLVERAAKLGEILRDQLNKLQ 348 (427)
T ss_pred HHhccCCCc-------cccccCCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 222222111 011122333333333344554444 4566667799999999998863
No 379
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=96.33 E-value=0.051 Score=44.88 Aligned_cols=153 Identities=14% Similarity=0.070 Sum_probs=82.5
Q ss_pred EEEecCCCCccc-ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccceEEEee
Q 048438 8 LCATIGTTAITA-VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWAT 86 (239)
Q Consensus 8 vv~t~gtt~~G~-i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g~l~~~ 86 (239)
|-.....|..|. ++++. +-.-+|..++.|-+--.-.-++| +. ..+.+..+++|.. +|.|..++++|
T Consensus 152 vyyCaNETVHGVEf~~~P----~~~~~~~vlVaDmSSnflSrpvD-----vs---k~gvi~aGAQKN~-G~aG~Tvvivr 218 (370)
T KOG2790|consen 152 VYYCANETVHGVEFDFIP----VNDPKGAVLVADMSSNFLSRPVD-----VS---KFGVIFAGAQKNV-GPAGVTVVIVR 218 (370)
T ss_pred EEEecCceeeceecCCCC----CCCCCCceEEEecccchhcCCcc-----ch---hcceEEecccccc-CccccEEEEEe
Confidence 444555677776 33333 11235777777876543333333 22 4788999999996 48898888887
Q ss_pred CcccccccccCCCCccCCC----CceecCCCC-CChHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEE-
Q 048438 87 NPEYLKNKATESKPVVDYK----DWQITLSRS-FRSLKLWFVIRNYGM-ENLRHFLRSHVNMARLFERLVSGDKRFEVV- 159 (239)
Q Consensus 87 ~~~~l~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~l~~~g~-~g~~~~~~~~~~la~~l~~~l~~~~g~~~~- 159 (239)
+ +.+.......+..+++. .-++..+-+ |...-+-..++.+-. .|+++..+...+-++.+++.|.+..||-..
T Consensus 219 ~-dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cp 297 (370)
T KOG2790|consen 219 K-DLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCP 297 (370)
T ss_pred h-hhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcc
Confidence 5 44443332222222221 011111111 222122223333321 255555556668889999999987787543
Q ss_pred cCC---CeeEEEEEEcCC
Q 048438 160 FPC---HFAVVCFRVSPL 174 (239)
Q Consensus 160 ~~~---~~~iv~f~~~~~ 174 (239)
.++ .--.|+||+.+.
T Consensus 298 Ve~~~RS~MNV~Fri~~d 315 (370)
T KOG2790|consen 298 VEPSVRSRMNVPFRIEKD 315 (370)
T ss_pred cchhhhhhcccceeecch
Confidence 122 123588999863
No 380
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=95.97 E-value=0.13 Score=43.79 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=38.5
Q ss_pred cccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCC-CCcceEEEcCccc
Q 048438 17 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV-EGADSFSLNAHKW 73 (239)
Q Consensus 17 ~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~-~~~Ds~~~~~hK~ 73 (239)
.+.-+=++.|.+||++||+.++||..|.++-....-|.+..-++ .-+|.++|| -|+
T Consensus 288 haSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFS-KK~ 344 (484)
T KOG1405|consen 288 HASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFS-KKF 344 (484)
T ss_pred cCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehh-hhh
Confidence 33345578999999999999999999988766554444322222 248888875 344
No 381
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=95.80 E-value=1.2 Score=39.08 Aligned_cols=204 Identities=10% Similarity=0.129 Sum_probs=102.0
Q ss_pred EEEEEecCCCCcccccCh---hHHHHHHHHhCCEEEEecccccccccC-------c--ccc--ccc-------CCCC-Cc
Q 048438 6 LFLCATIGTTAITAVDPL---KPLCDVAKQFGIWVHVDAAYAGSACIF-------P--EFR--HFI-------DGVE-GA 63 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl---~~i~~i~~~~gi~lhvD~A~~~~~~~~-------~--~~~--~~~-------~~~~-~~ 63 (239)
++-.+-.|.|.||...++ ++|.++||+|++.++-|--+..-.... + .+. .+. -+++ .-
T Consensus 206 vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdG 285 (472)
T KOG0634|consen 206 VLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDG 285 (472)
T ss_pred EEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccc
Confidence 345566778999998776 679999999999999999886544431 0 000 000 0110 01
Q ss_pred ceE-EEcCcccCCCc-ccceEEEeeCcccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhCHHHHHHHHHHHHH
Q 048438 64 DSF-SLNAHKWFFAT-LDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVN 141 (239)
Q Consensus 64 Ds~-~~~~hK~l~~P-~g~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~g~~~~~~~~~~ 141 (239)
-++ .-++.|-+. | .-.|.+-. .+.++.+... ..+...++...+...-+++.++..|++|+.+.+.+...
T Consensus 286 rVIr~dSFSKiia-PGlRlG~it~-~~~~l~ril~-------~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~ 356 (472)
T KOG0634|consen 286 RVIRNDSFSKIIA-PGLRLGWITG-NSLFLKRILD-------LAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRS 356 (472)
T ss_pred cEEeccchhhhhc-CcceeEEeec-CHHHHHHHhh-------hcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 225667543 3 22333322 2223333221 11112222122444556677888888887776654322
Q ss_pred ----HHHHHHHHHhC-CCCe-EEEcCCCeeE-EEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEE
Q 048438 142 ----MARLFERLVSG-DKRF-EVVFPCHFAV-VCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAY 214 (239)
Q Consensus 142 ----la~~l~~~l~~-~~g~-~~~~~~~~~i-v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~ 214 (239)
.+..+...|.+ +|.- -.+.+|..++ +.++++-... ......++.-+.+...+.+.|..+
T Consensus 357 ~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~--------------~~~~~i~q~~e~i~~~~vk~gV~~ 422 (472)
T KOG0634|consen 357 SYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINF--------------DTKKSINQIEEIIFIKAVKNGVKL 422 (472)
T ss_pred HHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEeccccc--------------ccccchHHHHHHHHHHHHHCCeEE
Confidence 23333344433 3332 3334565554 3444431110 111223444455666666777765
Q ss_pred EEEEEE--C-----CEeEEEEEecC
Q 048438 215 MTNVVL--G-----GIYAIRFATGA 232 (239)
Q Consensus 215 ~~~~~~--~-----g~~~lR~~~~~ 232 (239)
+-++.. . ++.++|+++..
T Consensus 423 v~G~~F~v~p~~s~~kiffRls~a~ 447 (472)
T KOG0634|consen 423 VCGSWFMVDPESSWSKIFFRLSIAF 447 (472)
T ss_pred ecCceeEEcCccCCCcceEEEEeec
Confidence 554332 1 34599999653
No 382
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=95.22 E-value=1 Score=37.07 Aligned_cols=191 Identities=9% Similarity=-0.042 Sum_probs=100.8
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHh-CCEEEEecccccccccCcccccccCCCCCcceE-EEcCcccCCCcccc-
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQF-GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSF-SLNAHKWFFATLDC- 80 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~-gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~-~~~~hK~l~~P~g~- 80 (239)
.|-.+.+|.-.|.+|.+...+.|-++.+-- +..++||.|+--+.-... ...++... -..+ .-.+.|.++ -.|.
T Consensus 160 ~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S-~~~lV~kY--pNLivlqTlSKsfG-LAGiR 235 (375)
T KOG0633|consen 160 KIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVES-RMKLVKKY--PNLIVLQTLSKSFG-LAGIR 235 (375)
T ss_pred cceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccc-cchHhHhC--CceeehhhhhhhcC-cceeE
Confidence 456778888889999998888888887643 789999999742211000 01112211 2222 235566543 2121
Q ss_pred -eEEEeeC--cccccccccCCCCccCCCCceecCCCCCChHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHhCCC
Q 048438 81 -CCLWATN--PEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG---MENLRHFLRSHVNMARLFERLVSGDK 154 (239)
Q Consensus 81 -g~l~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~g~~~~~~~~~~la~~l~~~l~~~~ 154 (239)
|+-+... ..++..... +|.+. .+.--.+|..+. .+.++...+...+-..++...|.+++
T Consensus 236 vG~~~~~~~ia~iln~~Ka---------PYNiS------~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~ 300 (375)
T KOG0633|consen 236 VGYGAFPLSIAEILNRAKA---------PYNIS------VAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVP 300 (375)
T ss_pred eecccccHHHHHHHHhccC---------Ccccc------chhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 1111100 122222110 11111 111122233332 23344444444455667778888887
Q ss_pred CeE-EEcCCCeeEEEEEEcCCCcchhhhhhhhcccccccHHHHHHHHHHHHHHHHhcCcEEEEEEE--ECCEeEEEEEec
Q 048438 155 RFE-VVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVV--LGGIYAIRFATG 231 (239)
Q Consensus 155 g~~-~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~--~~g~~~lR~~~~ 231 (239)
++. ..++...|.+..++.+.+ |.....++.++..+..+++-+.. ..-+.++|++++
T Consensus 301 ~~~~~~gg~daNFiLi~v~~~~---------------------n~~akkly~q~at~~gVvVRfrgse~~c~G~lRitvG 359 (375)
T KOG0633|consen 301 FLNDYPGGSDANFILIEVTGGD---------------------NGMAKKLYKQDATKMGVVVRFRGSEEGCKGYLRITVG 359 (375)
T ss_pred cccCCCCcccccEEEEEEcCCC---------------------cHHHHHHHHHHHHhcceEEEEcCCccccceeEEEEcC
Confidence 654 334567888888887643 45556777777666555554322 223689999988
Q ss_pred CCC
Q 048438 232 ATL 234 (239)
Q Consensus 232 ~~~ 234 (239)
.+-
T Consensus 360 t~E 362 (375)
T KOG0633|consen 360 TPE 362 (375)
T ss_pred Ccc
Confidence 653
No 383
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=94.56 E-value=0.094 Score=47.67 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=51.5
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++.-+|.||.+.+ +++|+++|++| +++++.|.+++-..- .+.........--.++.|+.|.++.| .
T Consensus 241 ~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~~~~~vI~v~SfSK~fg~~G~ 317 (521)
T TIGR03801 241 IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAELPYNTIGVYSFSKYFGATGW 317 (521)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhhCCCCEEEEEcchhhccCchh
Confidence 445666677899999888 67778889987 999999999974321 11111111111235677999997644 3
Q ss_pred cceEEEee
Q 048438 79 DCCCLWAT 86 (239)
Q Consensus 79 g~g~l~~~ 86 (239)
=+|+++..
T Consensus 318 RlG~i~~~ 325 (521)
T TIGR03801 318 RLGTIALH 325 (521)
T ss_pred hhhhhhcC
Confidence 36666653
No 384
>PRK09275 aspartate aminotransferase; Provisional
Probab=93.64 E-value=0.16 Score=46.26 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=51.1
Q ss_pred cEEEEEecCCCCcccccC---hhHHHHHHHH--hCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-c
Q 048438 5 PLFLCATIGTTAITAVDP---LKPLCDVAKQ--FGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-L 78 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~p---l~~i~~i~~~--~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~ 78 (239)
+-+|+++.-+|.||.+.+ +++|+++|++ +++|++.|.+|+-..- .+......+..--.++.|+.|.++.| .
T Consensus 242 tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~~~~~~I~v~SfSK~f~mtG~ 318 (527)
T PRK09275 242 IKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAVLPYNTILVYSFSKYFGATGW 318 (527)
T ss_pred CCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHhCCCCEEEEeehhhhccCcHh
Confidence 456777788999999888 7778888865 4999999999875321 11111111111235677899997654 2
Q ss_pred cceEEEee
Q 048438 79 DCCCLWAT 86 (239)
Q Consensus 79 g~g~l~~~ 86 (239)
=.|++...
T Consensus 319 RlG~i~~~ 326 (527)
T PRK09275 319 RLGVIALH 326 (527)
T ss_pred HHhhhhcC
Confidence 25666543
No 385
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=91.87 E-value=2 Score=37.21 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=77.4
Q ss_pred EEEecCCCCccc---ccChhHHHHHHHHhCCEEEEecccccccccCcc--c--ccccCCCCCcceEEEcCcccCCCccc-
Q 048438 8 LCATIGTTAITA---VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPE--F--RHFIDGVEGADSFSLNAHKWFFATLD- 79 (239)
Q Consensus 8 vv~t~gtt~~G~---i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~--~--~~~~~~~~~~Ds~~~~~hK~l~~P~g- 79 (239)
+.=.++.|.||. .+...+|.++.++.|..-++|-|+=+..--+++ + |.+..... -=+++.|+.|.++ -+|
T Consensus 176 LLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~-~~lva~S~SKnfg-LYgE 253 (396)
T COG1448 176 LLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGP-ELLVASSFSKNFG-LYGE 253 (396)
T ss_pred EEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCC-cEEEEehhhhhhh-hhhh
Confidence 333444688887 445788999999999999999995443222221 1 11222211 2467889999964 443
Q ss_pred -ceEEEe--eCcccccccccCCCCccCCCCceecCCCCCChHHHHH---HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 048438 80 -CCCLWA--TNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWF---VIRNYGMENLRHFLRSHVNMARLFERLVSGD 153 (239)
Q Consensus 80 -~g~l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~g~~g~~~~~~~~~~la~~l~~~l~~~ 153 (239)
.|.+.+ .+.+......+.-.... -..|+-+..--...++... .|+..-...+..+..+..++++.|.+.|++.
T Consensus 254 RVGa~~vva~~~~~a~~v~sqlk~~i-R~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~ 332 (396)
T COG1448 254 RVGALSVVAEDAEEADRVLSQLKAII-RTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKAL 332 (396)
T ss_pred ccceeEEEeCCHHHHHHHHHHHHHHH-HhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344433 22111111100000000 0001111000001111111 2333323445556666779999999999873
Q ss_pred -C--CeEEEcCCCeeEEEEE
Q 048438 154 -K--RFEVVFPCHFAVVCFR 170 (239)
Q Consensus 154 -~--g~~~~~~~~~~iv~f~ 170 (239)
+ .|..+ ..+.+|.+|.
T Consensus 333 ~~~~~f~~i-~~Q~GMFsy~ 351 (396)
T COG1448 333 GAPRNFDFI-ISQRGMFSYT 351 (396)
T ss_pred CCCcccchH-hhcCceeecC
Confidence 1 24443 3456675555
No 386
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=91.10 E-value=8.7 Score=33.34 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=44.3
Q ss_pred cccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc-ccceEEEeeCccccccc
Q 048438 19 AVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT-LDCCCLWATNPEYLKNK 94 (239)
Q Consensus 19 ~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P-~g~g~l~~~~~~~l~~~ 94 (239)
.++.|+++.+..|+. ++++.||-|+|=+.-.. .+..- +||.+..|+=|..++- ..+|..++.+.+++...
T Consensus 173 ~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~---EP~~v---GADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~ 245 (403)
T PF06838_consen 173 TIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ---EPTEV---GADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERA 245 (403)
T ss_dssp -HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS----GGGG---T-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc---Ccccc---chhheeccceeCCCCCccCcCCEEechHHHHHHH
Confidence 367788888888875 78999999997442211 11111 4999999999997652 33566677666665543
No 387
>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=89.66 E-value=14 Score=32.52 Aligned_cols=79 Identities=16% Similarity=0.037 Sum_probs=50.4
Q ss_pred EEEEEecCCCCcccc--cC--hhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCcccce
Q 048438 6 LFLCATIGTTAITAV--DP--LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC 81 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i--~p--l~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g 81 (239)
.+|++--+.-.-|.+ +| +..|.++|+++|+.++.|..+.+..-....+....-++ ..|..++ -|.|++-...|
T Consensus 208 aAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~-~PDI~t~--aK~L~gGlPig 284 (433)
T KOG1401|consen 208 AAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGV-TPDITTV--AKPLGGGLPIG 284 (433)
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCc-CCcceee--hhhccCCceeE
Confidence 345555555444443 33 67899999999999999999886433333332222233 3787765 57777666677
Q ss_pred EEEeeC
Q 048438 82 CLWATN 87 (239)
Q Consensus 82 ~l~~~~ 87 (239)
+..+++
T Consensus 285 A~~v~~ 290 (433)
T KOG1401|consen 285 ATGVRD 290 (433)
T ss_pred EEeehH
Confidence 788764
No 388
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=87.12 E-value=1.2 Score=35.03 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=32.1
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEec
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDA 41 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~ 41 (239)
++|+.|-|++..|.++|++.-+++++++|+.+|.=|
T Consensus 114 vvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIg 149 (191)
T cd01455 114 IVIVLSDANLERYGIQPKKLADALAREPNVNAFVIF 149 (191)
T ss_pred EEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEE
Confidence 788999999999999999888899999999987655
No 389
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=77.35 E-value=24 Score=33.14 Aligned_cols=147 Identities=15% Similarity=0.121 Sum_probs=81.7
Q ss_pred CCcccccChhHHHHHHHHhCCEEEEecccc-cccccCcccccccCCCCCcceEEEcCcccCCCcccce-----EEEeeCc
Q 048438 15 TAITAVDPLKPLCDVAKQFGIWVHVDAAYA-GSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCC-----CLWATNP 88 (239)
Q Consensus 15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A~~-~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P~g~g-----~l~~~~~ 88 (239)
...|.+.|..++++.+++.|..+++-.--- ...+.-| +--++|..+.+.+.+ +.|.|-| ||.++.
T Consensus 257 ~t~G~i~d~~el~~~a~~~~s~vv~atDLLaLtiLrpP-------gefGaDIavGSsQRF-GVPlGYGGPHAaFfAv~~- 327 (1001)
T KOG2040|consen 257 DTEGSVLDFDELVELAHANGSLVVMATDLLALTILRPP-------GEFGADIAVGSSQRF-GVPLGYGGPHAAFFAVSE- 327 (1001)
T ss_pred CCCCcccCHHHHHHHhhccCceEEEeehhhHHHccCCh-------hhcCceeeecccccc-CccccCCCchHHHHHHHH-
Confidence 447899999999999999998865533211 1111111 111499999999997 7887744 333321
Q ss_pred ccccccccCC--CCccCCC---CceecC------CCC--C-----ChHHHHHH-----HHHhCHHHHHHHHHHHHHHHHH
Q 048438 89 EYLKNKATES--KPVVDYK---DWQITL------SRS--F-----RSLKLWFV-----IRNYGMENLRHFLRSHVNMARL 145 (239)
Q Consensus 89 ~~l~~~~~~~--~~~~~~~---~~~~~~------~~~--~-----~~~~~~~~-----l~~~g~~g~~~~~~~~~~la~~ 145 (239)
++.+ ..+.. +...|.. .+.+.. -|| . .+-++.+- .-++|.+|++++.++.+.++..
T Consensus 328 ~l~R-~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~ 406 (1001)
T KOG2040|consen 328 SLVR-MMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLI 406 (1001)
T ss_pred HHHh-hCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHH
Confidence 1211 11100 0000100 011110 011 1 11122211 2356999999999999999999
Q ss_pred HHHHHhCCCCeEEEcCCCeeEEEEEEc
Q 048438 146 FERLVSGDKRFEVVFPCHFAVVCFRVS 172 (239)
Q Consensus 146 l~~~l~~~~g~~~~~~~~~~iv~f~~~ 172 (239)
|.+.|+.. |-++...+-.-.+.+++.
T Consensus 407 l~~~l~~a-ghel~~k~fFDTLkI~~~ 432 (1001)
T KOG2040|consen 407 LAEGLKNA-GHELQHKPFFDTLKIRCG 432 (1001)
T ss_pred HHHHHhhc-chhhccccccceEEEEec
Confidence 99999874 666665544444444443
No 390
>smart00642 Aamy Alpha-amylase domain.
Probab=76.25 E-value=2.4 Score=32.48 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=25.5
Q ss_pred CCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 15 TAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
...|+.++++++++-||++|+.+++|-.
T Consensus 64 ~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 64 PRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3578889999999999999999999985
No 391
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=75.54 E-value=2.4 Score=35.08 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=28.5
Q ss_pred cCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 12 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 12 ~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
...+..|+.++++++++.||++|+.+++|-+.
T Consensus 43 ~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 43 AVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp EESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccccccchhhhhhhhhhccccccceEEEeeec
Confidence 35677899999999999999999999999963
No 392
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=72.70 E-value=3.1 Score=37.59 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=28.6
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc--ccc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA--YAG 45 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A--~~~ 45 (239)
.+..|+.++++++++-||++||.+++|++ |.+
T Consensus 74 d~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~NH~~ 107 (479)
T PRK09441 74 RTKYGTKEELLNAIDALHENGIKVYADVVLNHKA 107 (479)
T ss_pred CcCcCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 46789999999999999999999999996 554
No 393
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=71.04 E-value=7.8 Score=31.29 Aligned_cols=41 Identities=20% Similarity=0.063 Sum_probs=34.0
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+|+.|..|++-.. +..|.....+++.++|++||+.+ ++..-
T Consensus 169 AGl~P~~vicEil-~~dG~ma~~~~l~~fA~~~~l~i-isi~d 209 (230)
T PRK00014 169 AGLRPAGVLCELM-NADGTMMRGASLERYAAKEGLVA-LAIDE 209 (230)
T ss_pred cCCCceEEEEEEe-CCCCCccCHHHHHHHHHHcCCcE-EEHHH
Confidence 5888988877774 45699999999999999999998 66644
No 394
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=69.12 E-value=4.3 Score=33.27 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=25.2
Q ss_pred cccccChhHHHHHHHHhCCEEEEecccccc
Q 048438 17 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGS 46 (239)
Q Consensus 17 ~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~ 46 (239)
.|.+.+.+++.++++++++-++|||+|-..
T Consensus 48 ~G~l~~~~~l~~~l~~~~i~~VIDATHPfA 77 (248)
T PRK08057 48 VGGFGGAEGLAAYLREEGIDLVIDATHPYA 77 (248)
T ss_pred ECCCCCHHHHHHHHHHCCCCEEEECCCccH
Confidence 455657799999999999999999998543
No 395
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=68.87 E-value=4.4 Score=33.22 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=25.3
Q ss_pred CcccccChhHHHHHHHHhCCEEEEecccccc
Q 048438 16 AITAVDPLKPLCDVAKQFGIWVHVDAAYAGS 46 (239)
Q Consensus 16 ~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~ 46 (239)
..|.+-+.+++.++++++++-++||++|-..
T Consensus 48 ~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA 78 (249)
T PF02571_consen 48 RVGRLGDEEGLAEFLRENGIDAVIDATHPFA 78 (249)
T ss_pred EECCCCCHHHHHHHHHhCCCcEEEECCCchH
Confidence 3455557799999999999999999999543
No 396
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=60.08 E-value=7.7 Score=35.67 Aligned_cols=32 Identities=34% Similarity=0.444 Sum_probs=27.9
Q ss_pred cCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 12 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 12 ~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
......|+.++++++++.||++||.+++|...
T Consensus 151 ~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 151 APHNAYGGPDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred ccccccCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 34567888999999999999999999999863
No 397
>PLN00196 alpha-amylase; Provisional
Probab=59.55 E-value=7.3 Score=34.68 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=26.0
Q ss_pred CCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 15 TAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
+..|+.++++++++-||++||.+++|.+
T Consensus 86 ~~fGt~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 86 SKYGNEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred ccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5678999999999999999999999996
No 398
>PRK12313 glycogen branching enzyme; Provisional
Probab=58.33 E-value=8.9 Score=35.98 Aligned_cols=29 Identities=28% Similarity=0.214 Sum_probs=26.3
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
....|+.++++++++.||++||.+++|.+
T Consensus 213 ~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 213 TSRYGTPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 45688899999999999999999999975
No 399
>PRK10785 maltodextrin glucosidase; Provisional
Probab=57.96 E-value=8.2 Score=35.98 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=25.9
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
....|+.++++++++-||++|+.+++|++
T Consensus 219 Dp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 219 DPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44578888999999999999999999996
No 400
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=57.78 E-value=9.4 Score=35.62 Aligned_cols=33 Identities=30% Similarity=0.255 Sum_probs=29.7
Q ss_pred cCCCCcccccChhHHHHHHHHhCCEEEEecccc
Q 048438 12 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 44 (239)
Q Consensus 12 ~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~ 44 (239)
+.++..|.-++++++++-||++||-+++|-.++
T Consensus 205 Ap~sryGtPedfk~fVD~aH~~GIgViLD~V~~ 237 (628)
T COG0296 205 APTSRYGTPEDFKALVDAAHQAGIGVILDWVPN 237 (628)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 457789999999999999999999999999653
No 401
>PRK05402 glycogen branching enzyme; Provisional
Probab=56.96 E-value=9.3 Score=36.50 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=26.9
Q ss_pred CCCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
.+...|+.++++++++.||++||.+++|.+
T Consensus 307 i~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 307 PTSRFGTPDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 356688899999999999999999999985
No 402
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=55.72 E-value=21 Score=32.02 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=35.3
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+|+.|..|++-...-..|...+.+++.++|++|++.+ ++.+.
T Consensus 188 Agl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~-v~i~d 229 (450)
T PLN02831 188 AGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKI-ISIAD 229 (450)
T ss_pred cCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcE-EEHHH
Confidence 5888998888876545799999999999999999998 66653
No 403
>PLN03244 alpha-amylase; Provisional
Probab=54.47 E-value=11 Score=36.07 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=28.5
Q ss_pred cCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 12 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 12 ~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+.++..|+.++++++++-||+.||-+++|-.+
T Consensus 432 ApssRYGTPeDLK~LVD~aH~~GI~VILDvV~ 463 (872)
T PLN03244 432 AASSRYGTPDDFKRLVDEAHGLGLLVFLDIVH 463 (872)
T ss_pred ccCcccCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45677899999999999999999999999864
No 404
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=53.38 E-value=14 Score=30.26 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=24.3
Q ss_pred cccccChhHHHHHHHHhCCEEEEeccccc
Q 048438 17 ITAVDPLKPLCDVAKQFGIWVHVDAAYAG 45 (239)
Q Consensus 17 ~G~i~pl~~i~~i~~~~gi~lhvD~A~~~ 45 (239)
.|-.-.-+++.++.+++++-++||++|-.
T Consensus 49 ~~G~l~~e~l~~~l~e~~i~llIDATHPy 77 (257)
T COG2099 49 VGGFLGAEGLAAFLREEGIDLLIDATHPY 77 (257)
T ss_pred ecCcCCHHHHHHHHHHcCCCEEEECCChH
Confidence 34456678999999999999999999853
No 405
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=53.10 E-value=12 Score=35.05 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=26.3
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
+...|+.++++++++.||++||.+++|.+
T Consensus 199 ~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 199 TSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred ccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 45678889999999999999999999986
No 406
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=52.09 E-value=12 Score=34.48 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=25.7
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
....|+..+++++++.||++|+.+++|.+
T Consensus 74 d~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 74 DPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34567888899999999999999999996
No 407
>PRK09505 malS alpha-amylase; Reviewed
Probab=52.07 E-value=13 Score=35.28 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=25.9
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
....|+.++++++++-||++||.+++|..
T Consensus 285 d~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V 313 (683)
T PRK09505 285 DANMGTEADLRTLVDEAHQRGIRILFDVV 313 (683)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 35578888999999999999999999996
No 408
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=51.84 E-value=26 Score=30.13 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=34.2
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+|+.|..|++-.. +..|...+.+++.++|++||+.+ ++.+-
T Consensus 153 AGl~p~~vicEil-~~dG~ma~~~~l~~fA~~h~l~~-isi~d 193 (339)
T PRK09314 153 AGLKPVAVICEIM-KEDGTMARRDDLEDFAKKHNLKM-IYVSD 193 (339)
T ss_pred cCCCceEEEEEEe-cCCCCcccHHHHHHHHHHcCCcE-EEHHH
Confidence 5888988877775 56799999999999999999998 66654
No 409
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=51.66 E-value=22 Score=24.31 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=33.6
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH 71 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h 71 (239)
+++++..|-+.. .+ ++++-+.++++|+.+.|+++-....- + ..+.+|.+..++|
T Consensus 2 Il~~Cg~G~sTS-~~--~~ki~~~~~~~~~~~~v~~~~~~~~~---~------~~~~~Diil~~Pq 55 (96)
T cd05564 2 ILLVCSAGMSTS-IL--VKKMKKAAEKRGIDAEIEAVPESELE---E------YIDDADVVLLGPQ 55 (96)
T ss_pred EEEEcCCCchHH-HH--HHHHHHHHHHCCCceEEEEecHHHHH---H------hcCCCCEEEEChh
Confidence 345555554433 33 67999999999999988886532211 0 0123788876655
No 410
>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]
Probab=50.66 E-value=19 Score=31.54 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=34.3
Q ss_pred CCccEEEEEecCCCCcccc---cChhHHHHHHHHhCCEEEEeccc
Q 048438 2 GLIPLFLCATIGTTAITAV---DPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i---~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
|-.|-++|+.---|.||.+ ..|++|..+|+++++.++-|..+
T Consensus 213 ~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVY 257 (475)
T KOG0258|consen 213 GINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVY 257 (475)
T ss_pred cCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHH
Confidence 5567777777777788985 56899999999999999999974
No 411
>PLN02361 alpha-amylase
Probab=50.60 E-value=13 Score=32.72 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=26.4
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
.+..|+.++++++.+-||++|+.+++|..
T Consensus 69 ~~~~Gt~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 69 NSAYGSEHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred CcccCCHHHHHHHHHHHHHcCCEEEEEEc
Confidence 35678999999999999999999999996
No 412
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=50.18 E-value=27 Score=30.47 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
+|+.|..|++-. .+..|...+.+++.++|++||+.+ |+..
T Consensus 154 Agl~Paavi~ei-~~~~g~~~~~~~~~~fA~~h~L~~-v~i~ 193 (367)
T PRK14019 154 AGLTPAAVICEI-MKDDGTMARLPDLEEFAKEHGLKI-GTIA 193 (367)
T ss_pred cCCCceEEEEEE-ecCCCcccchHHHHHHHHHcCCcE-EEHH
Confidence 578898887776 445699999999999999999998 7764
No 413
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=49.01 E-value=14 Score=34.08 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=25.1
Q ss_pred CCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 15 TAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
...|+.++++++++-||++|+.+++|.+
T Consensus 69 ~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 69 PLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4578888999999999999999999975
No 414
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=47.95 E-value=35 Score=30.13 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=34.0
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+|+.|..|++-.. +..|...+.+++.++|++|++.+ ++.+-
T Consensus 155 Agl~Paavi~ei~-~~~G~~~~~~~~~~fA~~~~l~~-v~i~d 195 (402)
T PRK09311 155 AGLQPAGVICEIV-NEDGTMARVPELRVFADEHDLAL-ITIAD 195 (402)
T ss_pred cCCCceEEEEEEe-cCCCcccchHHHHHHHHHcCCeE-EEeec
Confidence 5888988877764 35699999999999999999998 77654
No 415
>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Probab=47.91 E-value=14 Score=24.99 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=19.2
Q ss_pred hHH-HHHHHHhCCEEEEecccccccc
Q 048438 24 KPL-CDVAKQFGIWVHVDAAYAGSAC 48 (239)
Q Consensus 24 ~~i-~~i~~~~gi~lhvD~A~~~~~~ 48 (239)
+.| .++++..++|||+|..-|...+
T Consensus 20 e~L~~k~~~~~D~wfH~~~~pg~hvi 45 (90)
T PF05670_consen 20 EMLTKKYARPNDLWFHADDFPGPHVI 45 (90)
T ss_pred HHHHHHhhhhcceeEeccCCCCCEEE
Confidence 345 6788899999999987665544
No 416
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=47.86 E-value=14 Score=33.04 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=25.7
Q ss_pred CcccccChhHHHHHHHHhCCEEEEecc
Q 048438 16 AITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 16 ~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
..|+.+++.++.+-+|++|+++++|..
T Consensus 72 ~~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 72 HFGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 689999999999999999999999995
No 417
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=47.59 E-value=32 Score=30.20 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=33.8
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+|+.|..|++-.. +..|.....+++.++|++|++.+ ++.+.
T Consensus 140 AGl~p~~vicei~-~~dG~m~~~~~~~~fA~~h~l~~-i~i~d 180 (387)
T PRK09318 140 LGFKRYAVIVEIL-DEKGDSHDLDYVLKLAEKFSLPV-LEIDD 180 (387)
T ss_pred cCCCceEEEEEEe-cCCCccccHHHHHHHHHHCCCcE-EEHHH
Confidence 5888988877763 45699999999999999999998 77653
No 418
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=47.40 E-value=22 Score=31.35 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=25.9
Q ss_pred CCCCcccccChhHHHHHHHHhCCEEEEec
Q 048438 13 GTTAITAVDPLKPLCDVAKQFGIWVHVDA 41 (239)
Q Consensus 13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~ 41 (239)
....-|.+.+++++.++||+.|+++.||=
T Consensus 150 SDY~KG~L~~~q~~I~~ar~~~~pVLvDP 178 (467)
T COG2870 150 SDYAKGVLTNVQKMIDLAREAGIPVLVDP 178 (467)
T ss_pred eccccccchhHHHHHHHHHHcCCcEEECC
Confidence 34568999999999999999999999994
No 419
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=45.81 E-value=35 Score=31.43 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=34.2
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+|+.|..|++-.. +..|...+.+++.++|++||+.+ |+.+-
T Consensus 158 AGL~PaaVicEi~-~~dG~mar~~~l~~fA~~h~L~i-isi~d 198 (555)
T PRK09319 158 AGLYPAGVICEIQ-NPDGSMARLPELKEYAKQHGLKL-ISIAD 198 (555)
T ss_pred cCCCceEEEEEEe-cCCCCccCHHHHHHHHHHcCCcE-EEhHH
Confidence 5889998888764 45699999999999999999988 66653
No 420
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=45.79 E-value=36 Score=29.74 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=34.2
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+|+.|..|++-.. +..|...+.+++.++|++|++.+ ++...
T Consensus 154 Agl~p~avi~ei~-~~dg~m~~~~~~~~fA~~h~l~~-i~i~~ 194 (369)
T PRK12485 154 AGFSPASVIVEVM-NDDGTMARRPDLEVFAAKHGIKI-GTIAD 194 (369)
T ss_pred cCCCceEEEEEEe-cCCCCccChHHHHHHHHHcCCcE-EEHHH
Confidence 5888988888764 55699999999999999999998 77643
No 421
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=45.37 E-value=16 Score=33.64 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.8
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
....|..++++++++-||++|+.+++|.+
T Consensus 69 d~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 69 LPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred ChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 45578889999999999999999999985
No 422
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.67 E-value=40 Score=23.40 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=32.2
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH 71 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h 71 (239)
+++++..|-|++=. .+++.+.|+++|+-+.+.++-.. . ++ ..++.+|.+..++|
T Consensus 3 Ill~C~~GaSSs~l---a~km~~~a~~~gi~~~i~a~~~~-e--~~------~~~~~~Dvill~PQ 56 (99)
T cd05565 3 VLVLCAGGGTSGLL---ANALNKGAKERGVPLEAAAGAYG-S--HY------DMIPDYDLVILAPQ 56 (99)
T ss_pred EEEECCCCCCHHHH---HHHHHHHHHHCCCcEEEEEeeHH-H--HH------HhccCCCEEEEcCh
Confidence 45566677443333 35777888999999888864321 1 11 11234888876655
No 423
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=42.78 E-value=22 Score=34.13 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=26.4
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+...|+.++++++++-||++||.+++|-.+
T Consensus 293 ~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 293 SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456788899999999999999999999864
No 424
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=42.39 E-value=31 Score=24.98 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=13.3
Q ss_pred cChhHHHHHHHHhCCEEEEe
Q 048438 21 DPLKPLCDVAKQFGIWVHVD 40 (239)
Q Consensus 21 ~pl~~i~~i~~~~gi~lhvD 40 (239)
.|-+++.++|+++++++..=
T Consensus 92 ~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 92 EPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp ---HHHHHHHHHCT--EEEE
T ss_pred CCCHHHHHHHHHhCCcEEEc
Confidence 67899999999999998654
No 425
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=41.48 E-value=20 Score=30.38 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=18.1
Q ss_pred ccChhHHHHHHHHhCCEEE
Q 048438 20 VDPLKPLCDVAKQFGIWVH 38 (239)
Q Consensus 20 i~pl~~i~~i~~~~gi~lh 38 (239)
.|||+.+.+.||++|+-+|
T Consensus 69 ~DpL~~~I~eaHkrGlevH 87 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVH 87 (311)
T ss_pred ccHHHHHHHHHHHcCCEEE
Confidence 8999999999999999888
No 426
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=40.83 E-value=1.2e+02 Score=23.23 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=44.4
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEE----cCcccCCCccc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSL----NAHKWFFATLD 79 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~----~~hK~l~~P~g 79 (239)
.|-++.++=..+....+.+.+||.+.++++|+. .||-. .+.+.+. ++-+..+|.+.. ..+-.+++|.|
T Consensus 102 ~p~i~~i~R~~~~~R~i~Ne~el~~~l~~~~~~-~v~~~----~~s~~eq---v~~~~~a~viig~hGs~l~n~~F~~~~ 173 (206)
T PF04577_consen 102 RPRILYISRRKSGSRRILNEDELLEILKKYGFE-VVDPE----DLSFEEQ---VKLFASAKVIIGPHGSALTNLLFMPPG 173 (206)
T ss_pred CCeEEEEecCCCCCCcCcCHHHHHHHHhhCCeE-EEeCC----CCCHHHH---HHHhcCCCEEEecCchHhheeeecCCC
Confidence 465556666556678899999999999999954 45521 1122211 111224777654 34555666666
Q ss_pred ceEEEe
Q 048438 80 CCCLWA 85 (239)
Q Consensus 80 ~g~l~~ 85 (239)
+.++-+
T Consensus 174 s~viei 179 (206)
T PF04577_consen 174 STVIEI 179 (206)
T ss_pred CEEEEE
Confidence 666655
No 427
>PRK14706 glycogen branching enzyme; Provisional
Probab=40.55 E-value=24 Score=33.18 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=26.9
Q ss_pred CCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
.+...|+.++++++.+.||++||.+++|-.+
T Consensus 209 ~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~ 239 (639)
T PRK14706 209 PTSRLGTPEDFKYLVNHLHGLGIGVILDWVP 239 (639)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3556788999999999999999999999853
No 428
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=39.79 E-value=42 Score=28.53 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=31.4
Q ss_pred EEEEecCCCCccc-ccChhHHHHHHHHhCCEEEEecccc
Q 048438 7 FLCATIGTTAITA-VDPLKPLCDVAKQFGIWVHVDAAYA 44 (239)
Q Consensus 7 ~vv~t~gtt~~G~-i~pl~~i~~i~~~~gi~lhvD~A~~ 44 (239)
-+++.+||-..|. .+-..+|.++|++.|+.+.+|.+..
T Consensus 131 d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~ 169 (310)
T COG1105 131 DIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGE 169 (310)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChH
Confidence 3577888888888 4557999999999999999998643
No 429
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=39.63 E-value=57 Score=25.37 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=30.3
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
-++|++|-|.+..+.-.++.+.++.+|+.|+.+++=|.
T Consensus 110 kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGi 147 (192)
T cd01473 110 KVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGV 147 (192)
T ss_pred eEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEe
Confidence 35888999988776666788888889999999887664
No 430
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=39.43 E-value=22 Score=33.79 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.8
Q ss_pred ccccChhHHHHHHHHhCCEEEEeccc
Q 048438 18 TAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 18 G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
|.+++++++++-||++||.+++|.+.
T Consensus 242 g~~~efk~LV~~~H~~GI~VIlDvV~ 267 (688)
T TIGR02100 242 GQVAEFKTMVRALHDAGIEVILDVVY 267 (688)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 67889999999999999999999963
No 431
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=39.36 E-value=43 Score=29.13 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=22.7
Q ss_pred cChhHHHHHHHHhCCEEEEecccccc
Q 048438 21 DPLKPLCDVAKQFGIWVHVDAAYAGS 46 (239)
Q Consensus 21 ~pl~~i~~i~~~~gi~lhvD~A~~~~ 46 (239)
.++..|..+.+++++++.+|..|++|
T Consensus 274 ldl~~i~~lk~~~~~PV~~d~~Hs~G 299 (360)
T PRK12595 274 LDISAVPILKQETHLPVMVDVTHSTG 299 (360)
T ss_pred cCHHHHHHHHHHhCCCEEEeCCCCCc
Confidence 47888988888899999999999877
No 432
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=39.10 E-value=39 Score=23.14 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=33.3
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCc
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAH 71 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~h 71 (239)
+++++..|-+ +..+. ..+-+.++++|+-+.|+++-... + ++ ....+|.+..++|
T Consensus 6 ILl~C~~G~s-SS~l~--~k~~~~~~~~gi~~~v~a~~~~~-~--~~------~~~~~Dvill~pq 59 (95)
T TIGR00853 6 ILLLCAAGMS-TSLLV--NKMNKAAEEYGVPVKIAAGSYGA-A--GE------KLDDADVVLLAPQ 59 (95)
T ss_pred EEEECCCchh-HHHHH--HHHHHHHHHCCCcEEEEEecHHH-H--Hh------hcCCCCEEEECch
Confidence 4566666654 33433 78899999999998888854322 1 10 1123788776654
No 433
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=38.78 E-value=24 Score=29.98 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=35.7
Q ss_pred cccChhHHHHHHHHh--CCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC
Q 048438 19 AVDPLKPLCDVAKQF--GIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF 75 (239)
Q Consensus 19 ~i~pl~~i~~i~~~~--gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~ 75 (239)
.+++|+++.++.|+- ++.+.||-++|=+.-..+ + ..+ ++|.+..|+=|.-+
T Consensus 184 ~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~E---P--t~v-GaDliAGSLIKNpG 236 (416)
T COG4100 184 SIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKE---P--THV-GADLIAGSLIKNPG 236 (416)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccC---c--ccc-chhhhccceeeCCC
Confidence 367777778878774 789999999975432111 1 112 49999999999843
No 434
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.54 E-value=54 Score=26.94 Aligned_cols=28 Identities=7% Similarity=0.037 Sum_probs=23.7
Q ss_pred ccChhHHHHHHHHhCCEEEEeccccccc
Q 048438 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSA 47 (239)
Q Consensus 20 i~pl~~i~~i~~~~gi~lhvD~A~~~~~ 47 (239)
..++..|..+.+..++.+++|.+|++|.
T Consensus 170 ~~dl~ai~~lk~~~~lPVivd~SHs~G~ 197 (250)
T PRK13397 170 MLDIMAVPIIQQKTDLPIIVDVSHSTGR 197 (250)
T ss_pred ccCHHHHHHHHHHhCCCeEECCCCCCcc
Confidence 5668888888888999999999998874
No 435
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=37.66 E-value=29 Score=26.83 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=25.4
Q ss_pred cccccChhHHHHHHHHhC--CEEEEecccccc
Q 048438 17 ITAVDPLKPLCDVAKQFG--IWVHVDAAYAGS 46 (239)
Q Consensus 17 ~G~i~pl~~i~~i~~~~g--i~lhvD~A~~~~ 46 (239)
+|.+..|+++.+.+|++| +.+|+|=..|.+
T Consensus 27 ~g~I~~l~~~v~~~~~~gK~vfVHiDli~Gl~ 58 (175)
T PF04309_consen 27 TGDIGNLKDIVKRLKAAGKKVFVHIDLIEGLS 58 (175)
T ss_dssp SEECCCHHHHHHHHHHTT-EEEEECCGEETB-
T ss_pred cCcHHHHHHHHHHHHHcCCEEEEEehhcCCCC
Confidence 578999999999999987 789999887755
No 436
>PLN02784 alpha-amylase
Probab=37.26 E-value=29 Score=33.79 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=26.6
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
.+..|+.++++++.+-||++||.+++|..
T Consensus 561 ds~yGT~~ELk~LI~a~H~~GIkVIlDiV 589 (894)
T PLN02784 561 NSRYGTIDELKDLVKSFHEVGIKVLGDAV 589 (894)
T ss_pred CcCcCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 36689999999999999999999999986
No 437
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=36.80 E-value=40 Score=28.05 Aligned_cols=40 Identities=20% Similarity=-0.018 Sum_probs=31.2
Q ss_pred EEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccc
Q 048438 9 CATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSAC 48 (239)
Q Consensus 9 v~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~ 48 (239)
+...|.+.+-...++.++..+.++.++.++||.+|+.+.-
T Consensus 169 glr~g~~~n~~~~di~~~~~~~~~~~lpVivD~SH~~~~~ 208 (270)
T PF00793_consen 169 GLRGGYGPNYNVLDIAAVPIMKKKTHLPVIVDPSHANSRK 208 (270)
T ss_dssp EEEESSSSSSEEHHTTHHHHHHHHTSSEEEEEHHHHTTTC
T ss_pred eeeccccccccchhHHHHHHHHHhcCCCEEECchhhhccc
Confidence 3444555566678899999999999999999999987643
No 438
>PRK14705 glycogen branching enzyme; Provisional
Probab=36.66 E-value=28 Score=35.35 Aligned_cols=32 Identities=28% Similarity=0.199 Sum_probs=28.0
Q ss_pred cCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 12 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 12 ~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+.+...|+.++++++++-||+.||-+++|-..
T Consensus 806 ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~ 837 (1224)
T PRK14705 806 APTSRFGHPDEFRFLVDSLHQAGIGVLLDWVP 837 (1224)
T ss_pred CcCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44667889999999999999999999999753
No 439
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=35.32 E-value=26 Score=32.76 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.7
Q ss_pred ccChhHHHHHHHHhCCEEEEeccc
Q 048438 20 VDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 20 i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+++++++++-||++||.+++|..+
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV~ 251 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVVY 251 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEc
Confidence 578999999999999999999863
No 440
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=35.01 E-value=88 Score=23.32 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=24.3
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEec
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDA 41 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~ 41 (239)
.+.+|++|-|.+. +++.++++.+++.|+.+++=|
T Consensus 104 ~k~iillTDG~~~----~~~~~~a~~lk~~gi~i~~ig 137 (164)
T cd01482 104 PKVVILITDGKSQ----DDVELPARVLRNLGVNVFAVG 137 (164)
T ss_pred CEEEEEEcCCCCC----chHHHHHHHHHHCCCEEEEEe
Confidence 4567888888754 456777888888888776644
No 441
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=34.38 E-value=52 Score=28.83 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHhCCEEEEeccc
Q 048438 22 PLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 22 pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
+.++++++|++||..+.+=+.-
T Consensus 228 Ny~~ia~lAk~yg~~Vvv~s~~ 249 (389)
T TIGR00381 228 DYEKIANAAKKYGHVVLSWTIM 249 (389)
T ss_pred hHHHHHHHHHHhCCeEEEEcCC
Confidence 7899999999999988876633
No 442
>PLN02960 alpha-amylase
Probab=34.21 E-value=35 Score=33.29 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=26.4
Q ss_pred CCCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
.+...|+.++++++++-||++||.+++|-.
T Consensus 458 ~~~~yGtp~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 458 VSSRFGTPDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 355678889999999999999999999985
No 443
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=33.85 E-value=33 Score=28.27 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=22.1
Q ss_pred ccccChhHHHHHHHHhCCEEEEecccccc
Q 048438 18 TAVDPLKPLCDVAKQFGIWVHVDAAYAGS 46 (239)
Q Consensus 18 G~i~pl~~i~~i~~~~gi~lhvD~A~~~~ 46 (239)
|..+. .++.++++++++.++||++|-..
T Consensus 50 g~l~~-~~l~~~l~~~~i~~VIDAtHPfA 77 (256)
T TIGR00715 50 GALDP-QELREFLKRHSIDILVDATHPFA 77 (256)
T ss_pred CCCCH-HHHHHHHHhcCCCEEEEcCCHHH
Confidence 33443 56899999999999999998644
No 444
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.74 E-value=48 Score=28.73 Aligned_cols=32 Identities=6% Similarity=-0.044 Sum_probs=26.5
Q ss_pred cccccChhHHHHHHHHhCCEEEEecccccccc
Q 048438 17 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSAC 48 (239)
Q Consensus 17 ~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~ 48 (239)
+=...++..|..+.+.+++++++|.+|+.|.-
T Consensus 254 ~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~s 285 (352)
T PRK13396 254 TRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKS 285 (352)
T ss_pred CCCCcCHHHHHHHHHhhCCCEEECCcccCCcH
Confidence 33567899999998788999999999998743
No 445
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=33.53 E-value=45 Score=23.86 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=29.8
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhCCEEEEeccc
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
.+|++.+||........+.++++.+++.+-...|+-|+
T Consensus 3 ~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~af 40 (126)
T PRK00923 3 GLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVGF 40 (126)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 57889999998888889999999998865554566554
No 446
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=33.16 E-value=58 Score=26.42 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=23.0
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEec-ccccccc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDA-AYAGSAC 48 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~-A~~~~~~ 48 (239)
+|..|..+|-.++.++|+++|+++-+.. ||....+
T Consensus 166 ns~~~~~~~~~~~~~~~~e~G~~~~i~tDaH~~~~l 201 (237)
T COG1387 166 NSRPGRLDPNSEILRLARELGVKLAIGTDAHRPGDL 201 (237)
T ss_pred cCCcCccCchHHHHHHHHHhCCeEEeecCcCChhhc
Confidence 3446777777777777777777776654 5554433
No 447
>PRK12568 glycogen branching enzyme; Provisional
Probab=32.88 E-value=39 Score=32.32 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=26.6
Q ss_pred CCCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 13 GTTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 13 gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
.+...|..++++++++-||++||-+++|-.
T Consensus 311 ~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V 340 (730)
T PRK12568 311 PTARHGSPDGFAQFVDACHRAGIGVILDWV 340 (730)
T ss_pred cCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 355678899999999999999999999975
No 448
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=32.08 E-value=83 Score=27.64 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=32.2
Q ss_pred CCCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcc
Q 048438 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHK 72 (239)
Q Consensus 1 ~g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK 72 (239)
+|++|++-.+|.. +.++++++|++||..+.+=+......+ .+....+..+ +++-+++++.=
T Consensus 119 ~~~kpLL~aAt~e--------Nyk~m~~lA~~y~~pl~v~sp~Dln~l--k~Ln~~l~~~-Gv~dIVlDpgt 179 (386)
T PF03599_consen 119 AGKKPLLYAATEE--------NYKAMAALAKEYGHPLIVSSPIDLNLL--KQLNIKLTEL-GVKDIVLDPGT 179 (386)
T ss_dssp TTS--EEEEEBTT--------THHHHHHHHHHCT-EEEEE-SSCHHHH--HHHHHHHHTT-T-GGEEEE---
T ss_pred CcCCcEEeEcCHH--------HHHHHHHHHHHcCCeEEEEecccHHHH--HHHHHHHHhc-CcccEEecCCc
Confidence 4678888777665 589999999999999987553322211 1111123333 25667777643
No 449
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=31.96 E-value=45 Score=27.33 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=27.2
Q ss_pred EEEEecCCCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 7 ~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
.++++.||-..-.++-+...++.++++|+++++|=.
T Consensus 52 al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPV 87 (246)
T PF02110_consen 52 ALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPV 87 (246)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-T
T ss_pred EEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCc
Confidence 467788877777777788889999999999999974
No 450
>PLN02757 sirohydrochlorine ferrochelatase
Probab=31.52 E-value=46 Score=25.07 Aligned_cols=41 Identities=15% Similarity=-0.054 Sum_probs=32.7
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEecccc
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 44 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~A~~ 44 (239)
.+.+|++.+||........+.++++..++..-+-.|+.|+.
T Consensus 13 ~~~lllvgHGSrd~~a~~~~~~la~~l~~~~~~~~V~~aFl 53 (154)
T PLN02757 13 KDGVVIVDHGSRRKESNLMLEEFVAMYKQKTGHPIVEPAHM 53 (154)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEE
Confidence 45789999999999999999999999887665556666553
No 451
>PRK03705 glycogen debranching enzyme; Provisional
Probab=31.02 E-value=43 Score=31.73 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.8
Q ss_pred cccChhHHHHHHHHhCCEEEEeccc
Q 048438 19 AVDPLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 19 ~i~pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
.+.+++++++-||++||.+++|..+
T Consensus 240 ~~~efk~LV~~~H~~GI~VIlDvV~ 264 (658)
T PRK03705 240 ALDEFRDAVKALHKAGIEVILDVVF 264 (658)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4567999999999999999999863
No 452
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=30.26 E-value=50 Score=24.18 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.2
Q ss_pred ccChhHHHHHHHHhCCEEEE
Q 048438 20 VDPLKPLCDVAKQFGIWVHV 39 (239)
Q Consensus 20 i~pl~~i~~i~~~~gi~lhv 39 (239)
.|.+.|+.+.||+.||.+.+
T Consensus 43 ~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEE
Confidence 67789999999999987654
No 453
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=29.72 E-value=43 Score=31.53 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=26.1
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
....|+.++++++.+.||++|+.+++|=.
T Consensus 123 dp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 123 DPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 46689999999999999999999999973
No 454
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=28.64 E-value=43 Score=25.82 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=25.7
Q ss_pred cccccChhHHHHHHHHhC--CEEEEecccccc
Q 048438 17 ITAVDPLKPLCDVAKQFG--IWVHVDAAYAGS 46 (239)
Q Consensus 17 ~G~i~pl~~i~~i~~~~g--i~lhvD~A~~~~ 46 (239)
+|.+..|+++.+..+++| +++|||=..|..
T Consensus 31 ~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~ 62 (181)
T COG1954 31 TGHILNIKEIVKKLKNRGKTVFIHVDLVEGLS 62 (181)
T ss_pred echhhhHHHHHHHHHhCCcEEEEEeHHhcccC
Confidence 677889999999999986 799999888765
No 455
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=28.48 E-value=80 Score=23.91 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHhCCEEEEeccc
Q 048438 22 PLKPLCDVAKQFGIWVHVDAAY 43 (239)
Q Consensus 22 pl~~i~~i~~~~gi~lhvD~A~ 43 (239)
-+.++.+.++++|+.+.+|...
T Consensus 72 ~~~~~~~~~~~~~~~v~~D~~~ 93 (196)
T cd00287 72 AVLDALEEARRRGVPVVLDPGP 93 (196)
T ss_pred HHHHHHHHHHHcCCeEEEeCCc
Confidence 4677888899999999999964
No 456
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=28.23 E-value=57 Score=30.90 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCccc---ccChhHHHHHHHHhCCEEEEecccccccc
Q 048438 15 TAITA---VDPLKPLCDVAKQFGIWVHVDAAYAGSAC 48 (239)
Q Consensus 15 t~~G~---i~pl~~i~~i~~~~gi~lhvD~A~~~~~~ 48 (239)
...|+ +.-.+|-.++|++||.++++-+|+|+|--
T Consensus 162 vVPGTpgPitt~~EA~eF~k~yG~PvI~KAAyGGGGR 198 (1176)
T KOG0369|consen 162 VVPGTPGPITTVEEALEFVKEYGLPVIIKAAYGGGGR 198 (1176)
T ss_pred ccCCCCCCcccHHHHHHHHHhcCCcEEEeecccCCCc
Confidence 34455 45568889999999999999999998743
No 457
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=28.20 E-value=49 Score=32.11 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=26.1
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
....|..++++++++-||++|+.+++|..
T Consensus 58 dp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 58 NPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 45678889999999999999999999986
No 458
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=28.06 E-value=49 Score=25.65 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=45.3
Q ss_pred EEEecCCCCccc----------ccChhHHHHHHHHhCCEEEEecccccccccCcccccccCCCCCcceEEEcCcccCCCc
Q 048438 8 LCATIGTTAITA----------VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFAT 77 (239)
Q Consensus 8 vv~t~gtt~~G~----------i~pl~~i~~i~~~~gi~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~~P 77 (239)
.++..||..+|- -.+.-.+.++++++|+..=+|.-+.-..+..+..+..+..+..-+....+.|=.-..|
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H~~hl~~ 81 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLREGSGIVDSHLSHLLP 81 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHHhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhccCCeEeechhhhcCC
Confidence 355666666664 2345667899999999999998665555555544443443222456777888877777
No 459
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=27.32 E-value=1.6e+02 Score=22.10 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=19.1
Q ss_pred cEEEEEecCCCCcccccChhHHHHHHHHhCCEEEE
Q 048438 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHV 39 (239)
Q Consensus 5 p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhv 39 (239)
..+|++|-|....|... ..+..+.++++|+.+|+
T Consensus 104 ~~iiliTDG~~~~g~~~-~~~~~~~~~~~gi~i~~ 137 (180)
T cd01467 104 RVIVLLTDGENNAGEID-PATAAELAKNKGVRIYT 137 (180)
T ss_pred CEEEEEeCCCCCCCCCC-HHHHHHHHHHCCCEEEE
Confidence 45666777765555433 23445666666665543
No 460
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=27.19 E-value=1.6e+02 Score=22.56 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=25.6
Q ss_pred CCccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEEec
Q 048438 2 GLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDA 41 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhvD~ 41 (239)
+..+.+|++|-|.+....-..+.+.++.+++.|+.++.=|
T Consensus 108 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vg 147 (186)
T cd01480 108 KENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVA 147 (186)
T ss_pred CCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEe
Confidence 3456788888887633323345666677788888766544
No 461
>CHL00108 psbJ photosystem II protein J
Probab=27.12 E-value=43 Score=18.89 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=9.8
Q ss_pred CCccEEEEEecCC
Q 048438 2 GLIPLFLCATIGT 14 (239)
Q Consensus 2 g~~p~~vv~t~gt 14 (239)
|++|+.+|+|.+-
T Consensus 6 GRiPLWlVgtv~G 18 (40)
T CHL00108 6 GRIPLWLIGTVAG 18 (40)
T ss_pred ccccEEeeeehhh
Confidence 7888888877653
No 462
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=26.71 E-value=67 Score=31.19 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=28.7
Q ss_pred CcccccChhHHHHHHHHhCCEEEEeccccccc
Q 048438 16 AITAVDPLKPLCDVAKQFGIWVHVDAAYAGSA 47 (239)
Q Consensus 16 ~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~ 47 (239)
..|.++.++++.++++++|.++.|-|++|+|-
T Consensus 140 t~~~~~~~ee~~~fa~~~gyPvmiKA~~GGGG 171 (1149)
T COG1038 140 TDGPIETIEEALEFAEEYGYPVMIKAAAGGGG 171 (1149)
T ss_pred CCCCcccHHHHHHHHHhcCCcEEEEEccCCCc
Confidence 46778889999999999999999999999874
No 463
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=26.55 E-value=1.1e+02 Score=26.36 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=24.1
Q ss_pred cccChhHHHHHHHHhCCE--EEEecccccccc
Q 048438 19 AVDPLKPLCDVAKQFGIW--VHVDAAYAGSAC 48 (239)
Q Consensus 19 ~i~pl~~i~~i~~~~gi~--lhvD~A~~~~~~ 48 (239)
...+|.++....++.++. ++||.+|+.+.-
T Consensus 237 ~~~di~~~~~~l~~~~lp~~vmVD~SH~ns~k 268 (344)
T TIGR00034 237 SAADVAAAKKQLEKAGLPPHLMIDFSHGNSNK 268 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCeEEEeCCCccccc
Confidence 346788888888888998 999999987643
No 464
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=26.53 E-value=46 Score=29.49 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=26.7
Q ss_pred ecCCCCcccccChhHHHHHHHHhCC--EEEEecccccccccCcccccccCCCCCcceEEEcCccc
Q 048438 11 TIGTTAITAVDPLKPLCDVAKQFGI--WVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKW 73 (239)
Q Consensus 11 t~gtt~~G~i~pl~~i~~i~~~~gi--~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~ 73 (239)
+.-....|.++| .+...|+..|+ .+-+=|||+.+++.+- .+.+..+|.|+..+.++
T Consensus 143 ~TPp~~~G~i~p--~vL~Aa~~~Gv~evy~vGGaqAIAAlAyG-----Teti~~VDkIvGPGN~y 200 (412)
T PF00815_consen 143 CTPPPKDGKINP--AVLAAAHLAGVDEVYKVGGAQAIAALAYG-----TETIPKVDKIVGPGNAY 200 (412)
T ss_dssp EE-SS------H--HHHHHHHHTT-SEEEE--HHHHHHHHHH-------SSS---SEEE---SHH
T ss_pred EcCCCccCCCCH--HHHHHHHHcCCCEEEecccHHHHHHHHcC-----CCCCCceeEEECCCcHH
Confidence 333344788887 44556777776 6778889999888664 44566799998888776
No 465
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=26.40 E-value=64 Score=26.17 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=21.1
Q ss_pred cccChhHHHHHHHHhCCEEEEecccc
Q 048438 19 AVDPLKPLCDVAKQFGIWVHVDAAYA 44 (239)
Q Consensus 19 ~i~pl~~i~~i~~~~gi~lhvD~A~~ 44 (239)
.+.-++++.+.|+++|+.+++|--..
T Consensus 60 ~~~~ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 60 YLARLDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 45668999999999999999998554
No 466
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=26.26 E-value=62 Score=25.87 Aligned_cols=20 Identities=10% Similarity=0.306 Sum_probs=17.5
Q ss_pred ChhHHHHHHHHhCCEEEEec
Q 048438 22 PLKPLCDVAKQFGIWVHVDA 41 (239)
Q Consensus 22 pl~~i~~i~~~~gi~lhvD~ 41 (239)
-.+++.++|++|++.|+|+.
T Consensus 53 ~a~~~~~lc~~~~v~liINd 72 (211)
T COG0352 53 LAEKLRALCQKYGVPLIIND 72 (211)
T ss_pred HHHHHHHHHHHhCCeEEecC
Confidence 34688999999999999987
No 467
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=26.06 E-value=74 Score=20.69 Aligned_cols=26 Identities=19% Similarity=0.035 Sum_probs=20.7
Q ss_pred cChhHHHHHHHHhCCEEEEecccccc
Q 048438 21 DPLKPLCDVAKQFGIWVHVDAAYAGS 46 (239)
Q Consensus 21 ~pl~~i~~i~~~~gi~lhvD~A~~~~ 46 (239)
.-.+.+.++++++|+..+++|.++-.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d 60 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADD 60 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchh
Confidence 33567888899999999999988643
No 468
>PLN02681 proline dehydrogenase
Probab=26.06 E-value=62 Score=29.17 Aligned_cols=25 Identities=36% Similarity=0.678 Sum_probs=20.2
Q ss_pred ccChhHHHHHHHHhCCEEEEecccc
Q 048438 20 VDPLKPLCDVAKQFGIWVHVDAAYA 44 (239)
Q Consensus 20 i~pl~~i~~i~~~~gi~lhvD~A~~ 44 (239)
.+.+.+|++.|+++|+.+.||+=+.
T Consensus 219 ~~rl~~i~~~A~~~gv~l~IDAE~s 243 (455)
T PLN02681 219 HERLQKLCERAAQLGVPLLIDAEYT 243 (455)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCcc
Confidence 3446788888899999999999663
No 469
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=25.95 E-value=37 Score=19.44 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=10.6
Q ss_pred ChhHHHHHHHHhCCE
Q 048438 22 PLKPLCDVAKQFGIW 36 (239)
Q Consensus 22 pl~~i~~i~~~~gi~ 36 (239)
++.+|.++|+++||.
T Consensus 6 ~~~eL~~iAk~lgI~ 20 (43)
T PF07498_consen 6 TLSELREIAKELGIE 20 (43)
T ss_dssp -HHHHHHHHHCTT-T
T ss_pred CHHHHHHHHHHcCCC
Confidence 577888888888874
No 470
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=24.68 E-value=73 Score=27.70 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=21.3
Q ss_pred cccccChhHHHHHHHHhCCEEEEecccc
Q 048438 17 ITAVDPLKPLCDVAKQFGIWVHVDAAYA 44 (239)
Q Consensus 17 ~G~i~pl~~i~~i~~~~gi~lhvD~A~~ 44 (239)
.-.++.+++|.++|+++|+.+++|-...
T Consensus 43 ~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 43 EDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp --HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 4557789999999999999999998644
No 471
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=24.32 E-value=65 Score=31.59 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=26.0
Q ss_pred CCCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 14 tt~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
....|..++++++++-||++|+.+++|..
T Consensus 62 dp~lGt~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 62 NPELGGEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 45678888999999999999999999996
No 472
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=24.25 E-value=90 Score=20.95 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=21.9
Q ss_pred CCccEEEEEecCCCCcccccC----hhHHHHHHHHhCCEEE
Q 048438 2 GLIPLFLCATIGTTAITAVDP----LKPLCDVAKQFGIWVH 38 (239)
Q Consensus 2 g~~p~~vv~t~gtt~~G~i~p----l~~i~~i~~~~gi~lh 38 (239)
|-+|..+..+.+-...-.... ++.|.+.|+++|+.++
T Consensus 52 Ga~P~~~~~~l~~~~~~~~~~l~~~~~Gi~~~~~~~g~~iv 92 (96)
T PF00586_consen 52 GAKPLAILDSLGLPNPESPEELKEIVKGIAEACREFGIPIV 92 (96)
T ss_dssp TEEEEEEEEEEEESTTSBHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred CCeeeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCcEe
Confidence 556776666665433323222 3466788899998774
No 473
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=24.17 E-value=1.1e+02 Score=25.74 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=31.0
Q ss_pred cEEEEEecCC-CCccc-ccChhHHHHHHHHhC-CEEEEecccc
Q 048438 5 PLFLCATIGT-TAITA-VDPLKPLCDVAKQFG-IWVHVDAAYA 44 (239)
Q Consensus 5 p~~vv~t~gt-t~~G~-i~pl~~i~~i~~~~g-i~lhvD~A~~ 44 (239)
+.++.-++|. |..|. +..|++|.+++++.+ +-+.+|-||.
T Consensus 137 ~i~~e~~agegs~~g~~F~~L~eii~~~~~~~~igvCiDtcH~ 179 (280)
T COG0648 137 IILLENTAGEGSGKGTQFGELAEIIDLIEEKERIGVCIDTCHA 179 (280)
T ss_pred eEEEEEeccccCccccchhhHHHHHHhhcccCceEEEEEchhh
Confidence 3455666664 44554 888999999999987 9999999875
No 474
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.49 E-value=2e+02 Score=25.11 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=33.7
Q ss_pred EEEEEecCCCCcccccChhHHHHHHHHhC---CEEEEecccccc
Q 048438 6 LFLCATIGTTAITAVDPLKPLCDVAKQFG---IWVHVDAAYAGS 46 (239)
Q Consensus 6 ~~vv~t~gtt~~G~i~pl~~i~~i~~~~g---i~lhvD~A~~~~ 46 (239)
.+|+.|-..|..|-+-|..+|.+..++-+ ..++|=|-|+-+
T Consensus 522 vfii~tdndt~ageihp~~aik~yrea~~i~dakliv~amqa~d 565 (598)
T KOG4465|consen 522 VFIIFTDNDTFAGEIHPAEAIKEYREAMDIHDAKLIVCAMQAND 565 (598)
T ss_pred EEEEEecCcccccccCHHHHHHHHHHhcCCCcceEEEEEeecCC
Confidence 57889999999999999999999888854 568887766544
No 475
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.91 E-value=86 Score=20.57 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=18.8
Q ss_pred cChhHHHHHHHHhCCEEEEecccc
Q 048438 21 DPLKPLCDVAKQFGIWVHVDAAYA 44 (239)
Q Consensus 21 ~pl~~i~~i~~~~gi~lhvD~A~~ 44 (239)
.|++.|.+-|+..|.. +|+.+|
T Consensus 28 aPiKRii~eArdr~~L--IDATYG 49 (89)
T COG2052 28 APIKRIIQEARDRGML--IDATYG 49 (89)
T ss_pred ccHHHHHHHHHhcCcE--EEcccC
Confidence 5899999999999875 698886
No 476
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=22.82 E-value=92 Score=23.76 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.3
Q ss_pred ccccChhHHHHHHHHhCCEEEEe
Q 048438 18 TAVDPLKPLCDVAKQFGIWVHVD 40 (239)
Q Consensus 18 G~i~pl~~i~~i~~~~gi~lhvD 40 (239)
+..|+|+.+.+.|.++|+.|+|-
T Consensus 62 ~~~d~l~~~L~~A~~~Gmkv~~G 84 (166)
T PF14488_consen 62 PPVDLLEMILDAADKYGMKVFVG 84 (166)
T ss_pred CcccHHHHHHHHHHHcCCEEEEe
Confidence 55689999999999999999874
No 477
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=22.13 E-value=1.8e+02 Score=24.03 Aligned_cols=27 Identities=19% Similarity=0.095 Sum_probs=21.4
Q ss_pred ccChhHHHHHHHHhCCEEEEecccccc
Q 048438 20 VDPLKPLCDVAKQFGIWVHVDAAYAGS 46 (239)
Q Consensus 20 i~pl~~i~~i~~~~gi~lhvD~A~~~~ 46 (239)
..++..|..+.+++++.+.+|..|++|
T Consensus 180 ~~dl~~i~~lk~~~~~pV~~ds~Hs~G 206 (260)
T TIGR01361 180 TLDLSAVPVLKKETHLPIIVDPSHAAG 206 (260)
T ss_pred CcCHHHHHHHHHhhCCCEEEcCCCCCC
Confidence 566788888777778888888888766
No 478
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=22.05 E-value=2.4e+02 Score=19.82 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=20.6
Q ss_pred ccEEEEEecCCCCcccccChhHHHHHHHHhCCEEEE
Q 048438 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHV 39 (239)
Q Consensus 4 ~p~~vv~t~gtt~~G~i~pl~~i~~i~~~~gi~lhv 39 (239)
...+|+.|-|....+. .++.+..+.+++.++.+++
T Consensus 102 ~~~lvvitDg~~~~~~-~~~~~~~~~~~~~~v~v~~ 136 (161)
T cd00198 102 RRVIILLTDGEPNDGP-ELLAEAARELRKLGITVYT 136 (161)
T ss_pred ceEEEEEeCCCCCCCc-chhHHHHHHHHHcCCEEEE
Confidence 4456666666654443 4566666667666665443
No 479
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.38 E-value=77 Score=27.27 Aligned_cols=77 Identities=26% Similarity=0.240 Sum_probs=49.2
Q ss_pred ccEEEEEecC--CCCcccccChhHHHHHHHHhC------CEEEEecccccccccCcccccccCCCCCcceEEEcCcccCC
Q 048438 4 IPLFLCATIG--TTAITAVDPLKPLCDVAKQFG------IWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFF 75 (239)
Q Consensus 4 ~p~~vv~t~g--tt~~G~i~pl~~i~~i~~~~g------i~lhvD~A~~~~~~~~~~~~~~~~~~~~~Ds~~~~~hK~l~ 75 (239)
+-++++=|+| .|-...++.|+.|.+++++.. +++.+||..|=.++ .+-+.+.+.. .+|.+.+ .|.=+
T Consensus 222 ~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal--~QAk~F~eav-~l~GiIl--TKlDg 296 (340)
T COG0552 222 IDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL--SQAKIFNEAV-GLDGIIL--TKLDG 296 (340)
T ss_pred CCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH--HHHHHHHHhc-CCceEEE--Eeccc
Confidence 3467788888 488889999999999999864 78888998765443 2112111211 2666554 46556
Q ss_pred CcccceEEEe
Q 048438 76 ATLDCCCLWA 85 (239)
Q Consensus 76 ~P~g~g~l~~ 85 (239)
...|..++-+
T Consensus 297 tAKGG~il~I 306 (340)
T COG0552 297 TAKGGIILSI 306 (340)
T ss_pred CCCcceeeeH
Confidence 6666444433
No 480
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=20.84 E-value=60 Score=29.99 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=25.9
Q ss_pred CCcccccChhHHHHHHHHhCCEEEEecc
Q 048438 15 TAITAVDPLKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 15 t~~G~i~pl~~i~~i~~~~gi~lhvD~A 42 (239)
...|+..++.+|..-+|+.|+++++|.+
T Consensus 82 p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 82 PRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred ccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 4679999999999999999999999995
No 481
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=20.43 E-value=95 Score=20.70 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=17.2
Q ss_pred hhHHHHHHHHhCCEEEEecc
Q 048438 23 LKPLCDVAKQFGIWVHVDAA 42 (239)
Q Consensus 23 l~~i~~i~~~~gi~lhvD~A 42 (239)
-.+|.++|+++|++++=|-.
T Consensus 29 A~~I~~~A~e~~VPi~~~~~ 48 (82)
T TIGR00789 29 AERIIEIAKKHGIPIVEDPD 48 (82)
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 36799999999999998873
No 482
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=20.36 E-value=1.1e+02 Score=28.32 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=27.8
Q ss_pred CcccccChhHHHHHHHHhCCEEEEeccccccc
Q 048438 16 AITAVDPLKPLCDVAKQFGIWVHVDAAYAGSA 47 (239)
Q Consensus 16 ~~G~i~pl~~i~~i~~~~gi~lhvD~A~~~~~ 47 (239)
..|.+++.+++.++++++|.++.+-++.|+|-
T Consensus 134 ~~g~~qd~~~~~~~A~eiGyPVlIKAsaGGGG 165 (645)
T COG4770 134 YHGPIQDAAELVAIAEEIGYPVLIKASAGGGG 165 (645)
T ss_pred CCCcccCHHHHHHHHHhcCCcEEEEeccCCCC
Confidence 45668888999999999999999999988763
Done!