RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 048438
(239 letters)
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 304 bits (781), Expect = e-102
Identities = 97/250 (38%), Positives = 132/250 (52%), Gaps = 33/250 (13%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
AGLIP F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA I PEFRH ++GV
Sbjct: 232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV 291
Query: 61 EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
E ADSF+ N HKW DC +W +P YLK+ S + DY+ WQ+
Sbjct: 292 EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL 351
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
L R FRSLK+WFV R YG++ L+ ++R HV ++ FE V D RFEV +VCF
Sbjct: 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF 411
Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
R+ + N LLE IN++ K ++ L G + +RFA
Sbjct: 412 RLKG----------------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449
Query: 230 TGATLTEERH 239
+ E H
Sbjct: 450 ICSRKVESGH 459
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 301 bits (772), Expect = e-101
Identities = 93/250 (37%), Positives = 124/250 (49%), Gaps = 35/250 (14%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
GLIP + T+GTT A D L V + +W+HVDAAYAGSA I PE+RH + G+
Sbjct: 231 EGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGI 290
Query: 61 EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
E ADSF+ N HKW DC +W +P YLK+ S DY+ WQI
Sbjct: 291 ESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQI 348
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
L R FR+LKLWFV+R YG+ENL+ +R H N A+ F L D RFE+ + +VCF
Sbjct: 349 PLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCF 408
Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
R+ NE N LL+ IN G ++ + +Y +R A
Sbjct: 409 RLKGS----------------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMA 446
Query: 230 TGATLTEERH 239
+ T+
Sbjct: 447 ICSRFTQSED 456
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 300 bits (770), Expect = e-101
Identities = 88/250 (35%), Positives = 126/250 (50%), Gaps = 35/250 (14%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
GL+P+F+CAT+GTT + A D L L + + G+W+H+DAAYAG+A + PEFR F+ G+
Sbjct: 238 RGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGI 297
Query: 61 EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
E ADSF+ N KW DC W + NP YL++ S D+ WQI
Sbjct: 298 EYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHA--NSGVATDFMHWQI 355
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
LSR FRS+KLWFVIR++G++NL+ +R MA+ FE LV D FE+ H +V F
Sbjct: 356 PLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVF 415
Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
R+ N +L+ I +G+ ++ + IRF
Sbjct: 416 RLKGP----------------------NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFT 453
Query: 230 TGATLTEERH 239
+ T
Sbjct: 454 VTSQFTTRDD 463
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 298 bits (765), Expect = 1e-99
Identities = 64/252 (25%), Positives = 100/252 (39%), Gaps = 20/252 (7%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
G +P + AT GTT + A DPL+ + DV ++ G+W+HVDAA+ GS + RH +DG+
Sbjct: 256 EGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGI 315
Query: 61 EGADSFSLNAHKWFFATLDCCCLW------------ATNPEYLKNKATESKPVVDYKDWQ 108
+ ADS + N HK A L C L + YL + +D D
Sbjct: 316 QRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKV 375
Query: 109 ITLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVC 168
+ R LKLW + + G + L + +AR + + FE+V F VC
Sbjct: 376 VQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVC 435
Query: 169 FRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGG-IYAIR 227
F P + + Y E++++ L E + G + G R
Sbjct: 436 FWFVPPSLRGKQESPDY-------HERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFR 488
Query: 228 FATGATLTEERH 239
+
Sbjct: 489 VVVANSALTCAD 500
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 295 bits (758), Expect = 9e-99
Identities = 51/253 (20%), Positives = 93/253 (36%), Gaps = 21/253 (8%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
G +P ++ AT GTT A DP++ + D+ +++ +W+HVDAA+ G + + RH ++G+
Sbjct: 242 KGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGI 301
Query: 61 EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
E A+S + N HK L C + YL + D D I
Sbjct: 302 ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAI 361
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF--PCHFAVV 167
R K W + + G + + + +A + + FE+VF V
Sbjct: 362 QCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNV 421
Query: 168 CFRVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTN-VVLGGIYAI 226
CF P + + E++++ ++ + SG +
Sbjct: 422 CFWYIPQSL-------RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFF 474
Query: 227 RFATGATLTEERH 239
R +
Sbjct: 475 RMVISNPAATQSD 487
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 291 bits (748), Expect = 3e-97
Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 32/249 (12%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
GLIP + T GTT A+D L + D+A + +W+HVD AY G A I + + GV
Sbjct: 255 EGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGV 313
Query: 61 EGADSFSLNAHKWFFATLDCCCLW----------ATNPEYLKNKATESKPVVDYKDWQIT 110
E A S S++ HK F+ T+ C L + +YL + E + + D I
Sbjct: 314 ERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDE---LPNLVDKSIA 370
Query: 111 LSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFR 170
++ F +LK++ ++N G + L + ++ + +FE++ + V FR
Sbjct: 371 TTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFR 430
Query: 171 VSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFAT 230
+ E ++E N+ L G A + ++ G A++F
Sbjct: 431 ATH------------------ETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTI 472
Query: 231 GATLTEERH 239
Sbjct: 473 LNPCLTTSD 481
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 100 bits (251), Expect = 9e-25
Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 12/192 (6%)
Query: 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIF------PEFRHFID 58
+ L + D ++ L +A+++ + +HVD+ F
Sbjct: 207 TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF 266
Query: 59 GVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL--SRS-F 115
V G S S + HK+ FA + N + ++ + TL SR
Sbjct: 267 RVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGA 326
Query: 116 RSLKLWFVIRNYGMENLRHFLRSHVNMAR-LFERLVSGDKRFEVVFPCHFAVVCFRVSPL 174
+ W + N G + V A + + +++ ++V+ F L
Sbjct: 327 IVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTL 386
Query: 175 PV--LMDKLKTK 184
+ L D+L K
Sbjct: 387 NIHELSDRLSKK 398
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 100 bits (250), Expect = 1e-24
Identities = 19/153 (12%), Positives = 55/153 (35%), Gaps = 16/153 (10%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
G P + +T+ D + + + + + I ++ AY A + +
Sbjct: 229 LGNRPC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY---AIQNNYYLEKLKKA 284
Query: 61 --EGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSL 118
D+ ++ K + +++T+ E++K + + S + +
Sbjct: 285 FKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---------SYPGRASAT-PVV 334
Query: 119 KLWFVIRNYGMENLRHFLRSHVNMARLFERLVS 151
+ + G +N +++ N +L + L++
Sbjct: 335 NTLVSLLSMGSKNYLELVKNQKNSKKLLDELLN 367
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 96.1 bits (239), Expect = 4e-23
Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 11/190 (5%)
Query: 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPE-----FRHFIDG 59
+ + + VDP+ + +A + GI HVDA G + E F
Sbjct: 240 TVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFR 299
Query: 60 VEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL--SRS-FR 116
+EG S S + HK+ + + P+ L + + + T SR
Sbjct: 300 LEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGAL 359
Query: 117 SLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPV 176
S W + + G E R + A + V +++ V+ L +
Sbjct: 360 SATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGD-PLWVIAVASDELNI 418
Query: 177 --LMDKLKTK 184
+M+++ +
Sbjct: 419 YQVMEEMAGR 428
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 93.2 bits (232), Expect = 2e-22
Identities = 37/189 (19%), Positives = 75/189 (39%), Gaps = 11/189 (5%)
Query: 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE--- 61
+ GTT + +D ++ L +AK+ I++HVDAA+ G F + ++ GV
Sbjct: 172 VDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKF 231
Query: 62 ----GADSFSLNAHKWFFATLDC-CCLWATNPEYLKNKATESKPVVDYKDWQITLSRS-F 115
G DS +++ HK + L+ + Y + ++ + + + I +R F
Sbjct: 232 DFSLGVDSITIDPHKMGHCPIPSGGILFK-DIGYKRYLDVDAPYLTETRQATILGTRVGF 290
Query: 116 RSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLP 175
+ V+R G E R + + + + + V+ P +V
Sbjct: 291 GGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIEP-ILNIVAIEDEDYK 349
Query: 176 VLMDKLKTK 184
+ KL+ +
Sbjct: 350 EVCKKLRDR 358
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 85.1 bits (210), Expect = 3e-19
Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 16/196 (8%)
Query: 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFG------IWVHVDAAYAGSACIFPEFRHFID 58
+ + A +G+T + +K L D+ + +HVDAA G F D
Sbjct: 203 TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD 262
Query: 59 -GVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL--SRS- 114
+ S +++ HK+ + N E L + + TL S+
Sbjct: 263 FRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGS 322
Query: 115 FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVF-PCHFAVVCFRVSP 173
+ + ++ + G E R+ + + + + +RF +V +V F +
Sbjct: 323 SQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKD 382
Query: 174 -----LPVLMDKLKTK 184
+ D L+
Sbjct: 383 SSCHTEFEISDMLRRY 398
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 71.9 bits (176), Expect = 1e-14
Identities = 36/201 (17%), Positives = 69/201 (34%), Gaps = 21/201 (10%)
Query: 5 PLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAGSACIFPEFRHFID 58
+ + T G T + +PL D +F I +H+DAA G F D
Sbjct: 188 TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD 247
Query: 59 -GVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL--SRS- 114
+ S S + HK+ A L C + + E L + + + + + SR
Sbjct: 248 FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPA 307
Query: 115 FRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFA----VVCFR 170
+ + ++ G E + +A ++ +E + VCF+
Sbjct: 308 GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFK 367
Query: 171 VSP-------LPVLMDKLKTK 184
+ L L ++L+ +
Sbjct: 368 LKDGEDPGYTLYDLSERLRLR 388
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 48.6 bits (115), Expect = 6e-07
Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 10/146 (6%)
Query: 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADS 65
L + +T A D L+ L + + I V+ AY + V D+
Sbjct: 218 LCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA 277
Query: 66 FSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIR 125
F + K F + + N +++ + K + S S SL + +
Sbjct: 278 FVQSLDKNFMVPVGGAIIAGFNDSFIQEIS---------KMYPGRASAS-PSLDVLITLL 327
Query: 126 NYGMENLRHFLRSHVNMARLFERLVS 151
+ G + L+ M +
Sbjct: 328 SLGSNGYKKLLKERKEMFSYLSNQIK 353
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 48.5 bits (115), Expect = 8e-07
Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 10/146 (6%)
Query: 6 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADS 65
L L +T A D L+ L + + I V+ AY + V D+
Sbjct: 200 LCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDA 259
Query: 66 FSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIR 125
F + K F + + N ++++ + K + S S SL + +
Sbjct: 260 FVQSLDKNFMVPVGGAIIAGFNEPFIQDIS---------KMYPGRASAS-PSLDVLITLL 309
Query: 126 NYGMENLRHFLRSHVNMARLFERLVS 151
+ G R L+ M +
Sbjct: 310 SLGCSGYRKLLKERKEMFVYLSTQLK 335
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 9e-05
Identities = 51/266 (19%), Positives = 78/266 (29%), Gaps = 114/266 (42%)
Query: 40 DAAYAGSACI-------------FPEFRH-----------FIDGVEGADSF------SLN 69
A G+A + F E R I A++ +L+
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK--FSAETLSELIRTTLD 204
Query: 70 AHKWFFATLDCCCL--WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI--- 124
A K F L+ + W NP + P DY L S L VI
Sbjct: 205 AEKVFTQGLN---ILEWLENPS--------NTPDKDY------LLSIPISCPLIGVIQLA 247
Query: 125 ------RNYGM--ENLRHFLRS---HVN---MARL---------FERLVSGDKRFEVVF- 160
+ G LR +L+ H A F V K V+F
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV--RKAITVLFF 305
Query: 161 ---PCHFAVVCFRVSPLPVLMDKLKTKYEN------CLLS--------EEEQINEFNREL 203
C+ A + + LP + L+ EN +LS ++ +N+ N L
Sbjct: 306 IGVRCYEA---YPNTSLPPSI--LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 204 LES-------INASGKAYMTNVVLGG 222
+N + N+V+ G
Sbjct: 361 PAGKQVEISLVNGA-----KNLVVSG 381
Score = 38.9 bits (90), Expect = 0.001
Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 44/175 (25%)
Query: 65 SFSLNAHKWFFATLDCCCLW----ATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKL 120
+ +F A+ L PE + A + +P L F L
Sbjct: 19 VLLVPTASFFIASQ----LQEQFNKILPEPTEGFAADDEPTT-----PAELVGKF----L 65
Query: 121 WFVIRNYGMENLRHF---LRSHVNMARLFER-LVSGDKRFEVVFPCH-FAVVCFRVSPLP 175
+V + F L + FE + G+ ++ H A + +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEGN---DI----HALAAKLLQENDTT 115
Query: 176 VLMDK--LKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRF 228
++ K +K ++++ + N L ++ G A + AI F
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-GNA--------QLVAI-F 160
Score = 32.3 bits (73), Expect = 0.16
Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 49/176 (27%)
Query: 91 LKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMENLRHF-------LRSHVNMA 143
L + ++ V + D + F L ++ N + HF +R + A
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILD---IVINNPVNLTIHFGGEKGKRIRENY-SA 1690
Query: 144 RLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKTKYENCLLSEEEQIN--EF-- 199
+FE +V G + E +F +++ T Y SE+ ++ +F
Sbjct: 1691 MIFETIVDGKLKTEKIFK---------------EINEHSTSY--TFRSEKGLLSATQFTQ 1733
Query: 200 ------NRELLESINASGKAYMTNVVLG---GIY--------AIRFATGATLTEER 238
+ E + + G G G Y + + + R
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 37.0 bits (86), Expect = 0.004
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE-GADSFSLNAHKWFFATL 78
+ +K + V ++ + + V+ AY + P + E GAD + HK A+
Sbjct: 163 LPDVKKIAKVCSEYDVPLLVNGAY--AIGRMP-----VSLKEIGADFIVGSGHKSMAASG 215
Query: 79 DCCCLWA 85
+
Sbjct: 216 PIGVMGM 222
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 35.7 bits (83), Expect = 0.010
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 17/67 (25%)
Query: 11 TIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVE--GADSFS 67
T+G V L+ + + G V VD + A + +D + AD +
Sbjct: 177 TLGG-----VTDLRAMTKLVHDVGALVVVDHSAAAP--------YRLLD-IRETDADVVT 222
Query: 68 LNAHKWF 74
+NAH W
Sbjct: 223 VNAHAWG 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.032
Identities = 33/242 (13%), Positives = 68/242 (28%), Gaps = 90/242 (37%)
Query: 69 NAHKWFFATLDCCCLWATNPEYLKNK-ATESK-PVVDYKDWQITLSRSFRSLKLW---FV 123
+ F + N ++L + TE + P + + + R + +++ V
Sbjct: 77 EMVQKFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 124 IRNYGMENLRHFL---RSHVNMARLFERLVSG---------------DKRFEVVFPCHFA 165
R LR L R N+ L+ G + + F
Sbjct: 132 SRLQPYLKLRQALLELRPAKNV------LIDGVLGSGKTWVALDVCLSYKVQCKMD--FK 183
Query: 166 V--------------------VCFRVSP-----------LPVLMDKLKTK---------Y 185
+ + +++ P + + + ++ + Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 186 ENCLL-----SEEEQINEFN---RELLESINASGKAYMTNVVLGGIYAIRFA--TGATLT 235
ENCLL + N FN + LL + +T+ + TLT
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ----VTDFLSAATTTHISLDHHSMTLT 299
Query: 236 EE 237
+
Sbjct: 300 PD 301
Score = 32.9 bits (74), Expect = 0.10
Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 42/180 (23%)
Query: 74 FFATLDCCCLWATNPEYLKN--KATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYGMEN 131
F DC + + K+ E ++ KD +L+L++ + + E
Sbjct: 29 FVDNFDCKDV----QDMPKSILSKEEIDHIIMSKD------AVSGTLRLFWTLLSKQEEM 78
Query: 132 LRHFLRS--HVNMARLFERLVSGDK-------RF-EVVFPCHFAVVCFRVSPLPVLMDKL 181
++ F+ +N L + + + + E + F + V +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF--AKYNVSRLQP 136
Query: 182 KTKYENCL--LSEEEQINEFNRELLESINASGKAYMTNVVL----------GGIYAIRFA 229
K L L + + L++ + SGK ++ V I+ +
Sbjct: 137 YLKLRQALLELRPAKNV------LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 32.1 bits (72), Expect = 0.14
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 9 CATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-----------I 57
C + G ++ + LK + ++AKQ GI+V +D+A F + R
Sbjct: 193 CNSAGGQPVS-MSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIF 251
Query: 58 DGVEGADSFSLNAHK 72
D + AD+ +++A K
Sbjct: 252 DMYKYADALTMSAKK 266
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 32.2 bits (74), Expect = 0.15
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 22 PLKPLCDVAKQFGIWVHVDAAYA 44
PL L +++K+FG + VD +++
Sbjct: 204 PLAELVNISKEFGCALLVDESHS 226
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 31.8 bits (73), Expect = 0.19
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 22 PLKPLCDVAKQFGIWVHVDAAYA 44
LK +CD+A ++ V VD ++A
Sbjct: 193 DLKSICDLADKYNALVMVDDSHA 215
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 31.8 bits (73), Expect = 0.20
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 22 PLKPLCDVAKQFGIWVHVDAAYA 44
LK +CD+A ++ V VD ++A
Sbjct: 195 NLKGVCDLADKYDALVMVDDSHA 217
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 31.4 bits (72), Expect = 0.25
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 22 PLKPLCDVAKQFGIWVHVDAAYA 44
PLK + VAK+ G V VD A++
Sbjct: 212 PLKEMVAVAKKHGAMVLVDEAHS 234
>2hxj_A Hypothetical protein; APC83807, structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics; 2.21A {Neisseria meningitidis MC58} SCOP:
a.136.1.1 PDB: 3mw6_A
Length = 144
Score = 30.5 bits (68), Expect = 0.27
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 87 NPEYLKNKATESKPVVDYKDWQITLSRSFRSLK------LWFVIRNYGMENLRHFLRSHV 140
+ +K +++ + D+ + + + F+ L L + Y + L +H
Sbjct: 16 SAVQTMSKKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHC 75
Query: 141 NMARLFERLVSGDKRF 156
R + L G KRF
Sbjct: 76 RRPRYLKALARGGKRF 91
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 31.1 bits (71), Expect = 0.27
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 22 PLKPLCDVAKQFGIWVHVDAAYA 44
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 31.0 bits (71), Expect = 0.32
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 22 PLKPLCDVAKQFGIWVHVDAAYA 44
L L +A +F V VD A++
Sbjct: 191 NLPELTSIANEFDAAVMVDDAHS 213
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 30.6 bits (70), Expect = 0.38
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 22 PLKPLCDVAKQFGIWVHVDAAYA 44
PL + V +Q W+ VD A+
Sbjct: 186 PLAEIQQVTQQHNGWLMVDDAHG 208
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 30.7 bits (70), Expect = 0.40
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 23 LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH-FIDGVEGADSFSL 68
L+ + K+ G+++ +D A SA P D D F +
Sbjct: 166 LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYI 212
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 30.5 bits (68), Expect = 0.44
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-----------IDGVEGADSFSL 68
+ ++ + ++ + GI V DA F + + + AD ++
Sbjct: 194 MANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTM 253
Query: 69 NAHKWFFA 76
+ K
Sbjct: 254 SGKKDCLV 261
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 30.6 bits (70), Expect = 0.46
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVEGA-------DS 65
T + D L+ + A + I + DAAY S I I + A +S
Sbjct: 176 TGTVLNKDQLRAIVHYAIEHEILILFDAAY--STFISDPSLPKSIFEIPDARFCAIEINS 233
Query: 66 FS 67
FS
Sbjct: 234 FS 235
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 29.9 bits (68), Expect = 0.65
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 44
T A + L L + AK+ G + D+AYA
Sbjct: 211 TGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 29.9 bits (68), Expect = 0.68
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 10 ATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFR-HFIDGVEGADSFSL 68
AT + T +D ++ + DV K + +H+D + +A + + G D+ S
Sbjct: 150 ATEVGSIYT-LDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSF 208
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 30.0 bits (67), Expect = 0.82
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 23 LKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDG-----------VEGADSFSLNAH 71
LK + +AK++ I V +D+A F + R + AD +++A
Sbjct: 206 LKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAK 265
Query: 72 KWFFA 76
K
Sbjct: 266 KDAMV 270
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 29.2 bits (66), Expect = 1.1
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 19 AVDPLKPLCDVAKQFGIWVHVDA 41
A+ L+ + A+ G++V +D
Sbjct: 132 ALALLREVLREAEPRGVFVRLDM 154
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 29.0 bits (66), Expect = 1.4
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 15/63 (23%)
Query: 12 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVE--GADSFSLN 69
IG V + + ++ + GI HVDA + P ID + D S +
Sbjct: 176 IGV-----VQDIAAIGEMCRARGIIYHVDATQS--VGKLP-----ID-LSQLKVDLMSFS 222
Query: 70 AHK 72
HK
Sbjct: 223 GHK 225
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 28.8 bits (65), Expect = 1.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 44
T A L L + A++ G + DAAYA
Sbjct: 222 TGAAATRAQLTELVNFARKNGSILVYDAAYA 252
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 28.7 bits (65), Expect = 1.8
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 44
T A+ + +A++ G+W+ D Y
Sbjct: 171 TGAVADWGYFEEALGLARKHGLWLIHDNPYV 201
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 28.3 bits (64), Expect = 2.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 44
T +D + + +AKQ+ + V D AYA
Sbjct: 185 TAQCVELDFFERVVALAKQYDVMVVHDLAYA 215
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 27.9 bits (63), Expect = 3.0
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 44
T + + K + D AY
Sbjct: 194 TGSTATKEVFDEAIAKFKGTDTKIVHDFAYG 224
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 27.4 bits (62), Expect = 4.5
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-IDGVE--GADSFSLNAHK 72
+PL + +A Q G V VD A A H +D V+ D + + HK
Sbjct: 180 ENPLAEMITLAHQHGAKVLVDGAQAVM--------HHPVD-VQALDCDFYVFSGHK 226
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 27.1 bits (61), Expect = 4.9
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 44
T +++ L +A + + D Y+
Sbjct: 167 TGRTLSLEELISWVKLALKHDFILINDECYS 197
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 27.2 bits (61), Expect = 5.5
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 44
+ ++ +D K + D+ ++G + D Y+
Sbjct: 181 SGSVLDLDGWKEVFDLQDKYGFIIASDECYS 211
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 27.1 bits (61), Expect = 6.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDAA 42
V+P + + +A Q G V VDA
Sbjct: 185 VNPAEEIAQLAHQAGAKVLVDAC 207
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 26.7 bits (60), Expect = 6.4
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 23 LKPLCDVAKQFGIWVHVDAAYAG 45
L+ L ++A + G ++ D Y
Sbjct: 176 LEELVEIASEVGAYILSDEVYRS 198
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 26.6 bits (59), Expect = 9.1
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDA 41
V L L AK + VDA
Sbjct: 260 VPQLLDLAQRAKAHDLNFTVDA 281
>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
proline utilization A, PUTA, flavoenzyme, structural
genomic biology; HET: FAD MES; 2.20A {Geobacter
sulfurreducens}
Length = 1026
Score = 26.5 bits (59), Expect = 9.3
Identities = 2/22 (9%), Positives = 10/22 (45%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDA 41
+D ++ + + ++ +D
Sbjct: 246 LDRMRRIFKKVMELNGFLCIDM 267
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.444
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,759,035
Number of extensions: 216916
Number of successful extensions: 727
Number of sequences better than 10.0: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 58
Length of query: 239
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 148
Effective length of database: 4,160,982
Effective search space: 615825336
Effective search space used: 615825336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.4 bits)