RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 048438
(239 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 172 bits (436), Expect = 1e-51
Identities = 97/250 (38%), Positives = 132/250 (52%), Gaps = 33/250 (13%)
Query: 1 AGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGV 60
AGLIP F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA I PEFRH ++GV
Sbjct: 232 AGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGV 291
Query: 61 EGADSFSLNAHKWFFATLDCCCLW-----------ATNPEYLKNKATESKPVVDYKDWQI 109
E ADSF+ N HKW DC +W +P YLK+ S + DY+ WQ+
Sbjct: 292 EFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL 351
Query: 110 TLSRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCF 169
L R FRSLK+WFV R YG++ L+ ++R HV ++ FE V D RFEV +VCF
Sbjct: 352 PLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF 411
Query: 170 RVSPLPVLMDKLKTKYENCLLSEEEQINEFNRELLESINASGKAYMTNVVLGGIYAIRFA 229
R+ + N LLE IN++ K ++ L G + +RFA
Sbjct: 412 RLKG----------------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFA 449
Query: 230 TGATLTEERH 239
+ E H
Sbjct: 450 ICSRKVESGH 459
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 77.2 bits (189), Expect = 5e-17
Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 14/183 (7%)
Query: 5 PLFLCATIGTTAITAVDPLKPLCDV------AKQFGIWVHVDAAYAGSACIFP-EFRHFI 57
+ + T G T + +PL D I +H+DAA G F +
Sbjct: 200 TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD 259
Query: 58 DGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKN--KATESKPVVDYKDWQITLSRSF 115
+ S S + HK+ A L C + + E L + I SR
Sbjct: 260 FRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPA 319
Query: 116 RSLKLWFVIRNY-GMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFA----VVCFR 170
+ + G E + +A ++ +E + VCF+
Sbjct: 320 GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFK 379
Query: 171 VSP 173
+
Sbjct: 380 LKD 382
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 75.3 bits (184), Expect = 2e-16
Identities = 21/181 (11%), Positives = 57/181 (31%), Gaps = 9/181 (4%)
Query: 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGAD 64
+ +T+ D + + + + + I ++ AYA + E D
Sbjct: 212 RPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVD 270
Query: 65 SFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI 124
+ ++ K + +++T+ E++K + + + + +L +
Sbjct: 271 AVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL-------SYPGRASATPVVNTLVSLLSM 323
Query: 125 RNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPV-LMDKLKT 183
+ L ++ + +S + + C V+ PV + KL
Sbjct: 324 GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYN 383
Query: 184 K 184
Sbjct: 384 L 384
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 71.1 bits (173), Expect = 7e-15
Identities = 32/239 (13%), Positives = 68/239 (28%), Gaps = 16/239 (6%)
Query: 5 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGAD 64
L L +T A D L+ L + + I V+ AY + V D
Sbjct: 195 ILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRID 254
Query: 65 SFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVI 124
+F + K F + + N +++ D + + SL + +
Sbjct: 255 AFVQSLDKNFMVPVGGAIIAGFNEPFIQ----------DISKMYPGRASASPSLDVLITL 304
Query: 125 RNYGMENLRHFLRSHVNMARLF-ERLVSGDKRFEVVF---PCHFAVVCFRVSPLPVLMDK 180
+ G R L+ M +L + P + + + + DK
Sbjct: 305 LSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDK 364
Query: 181 LKTKYENCLLSEEEQINEFNRELLESINASGK--AYMTNVVLGGIYAIRFATGATLTEE 237
T+ + L + + + +M++ + A + +
Sbjct: 365 AVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQ 423
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 38.6 bits (89), Expect = 5e-04
Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 13/158 (8%)
Query: 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRH------- 55
I L + + ++ ++ + ++A +GI + DA F + +
Sbjct: 177 YICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVS 236
Query: 56 ----FIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITL 111
+ AD +++ K + N E + + A E V + L
Sbjct: 237 IKDIVHEMFSYADGCTMSGKKDCLVNIGGFLC--MNDEEMFSAAKELVVVYEGMPSYGGL 294
Query: 112 SRSFRSLKLWFVIRNYGMENLRHFLRSHVNMARLFERL 149
+ + E + H ++ +
Sbjct: 295 AGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREA 332
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 38.4 bits (88), Expect = 5e-04
Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 15/145 (10%)
Query: 20 VDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF-----------IDGVEGADSFSL 68
+ LK + +AK++ I V +D+A F + R + + AD ++
Sbjct: 203 LANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAM 262
Query: 69 NAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIRNYG 128
+A K L + + TE + + ++ + +
Sbjct: 263 SAKKDAMVP--MGGLLCMKDDSFFDVYTECRTLCVVQEG-FPTYGGLEGGAMERLAVGLY 319
Query: 129 MENLRHFLRSHV-NMARLFERLVSG 152
+L + + L + L
Sbjct: 320 DGMNLDWLAYRIAQVQYLVDGLEEI 344
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 31.8 bits (71), Expect = 0.072
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 9 CATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHF 56
++ LK + ++AKQ GI+V +D+A F + R
Sbjct: 191 TCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDP 238
>d2hxja1 a.136.1.1 (A:3-118) Hypothetical protein NMB1681 {Neisseria
meningitidis [TaxId: 487]}
Length = 116
Score = 27.5 bits (61), Expect = 0.68
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 87 NPEYLKNKATESKPVVDYKDWQITLSRSFRSLK------LWFVIRNYGMENLRHFLRSHV 140
+ +K +++ + D+ + + + F+ L L + Y + L +H
Sbjct: 11 SAVQTMSKKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHC 70
Query: 141 NMARLFERLVSGDKRFEV 158
R + L G KRF++
Sbjct: 71 RRPRYLKALARGGKRFDL 88
>d1p35a_ b.28.1.1 (A:) Baculovirus p35 protein {AcMNPV (Autographa
californica nuclear polyhedrosis virus) [TaxId: 46015]}
Length = 299
Score = 28.0 bits (62), Expect = 1.0
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 17/84 (20%)
Query: 131 NLRHFLRSHV-----NMARLFERLVSGDKRFEVVFPC-HFAVVCFRVSPLPVLMDKLKTK 184
NLR ++S V + R + + G F H++V C LK+K
Sbjct: 61 NLRDRIKSKVDEQFDQLERDYSDQMDGFHDSIKYFKDEHYSVSCQN-------GSVLKSK 113
Query: 185 YENCLLS----EEEQINEFNRELL 204
+ L S +++ I + + L
Sbjct: 114 FAKILKSHDYTDKKSIEAYEKYCL 137
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 27.9 bits (61), Expect = 1.2
Identities = 13/137 (9%), Positives = 26/137 (18%), Gaps = 8/137 (5%)
Query: 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGAD------SFS 67
T A+ L+ + D + + V D Y + FS
Sbjct: 172 TGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFS 231
Query: 68 --LNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLWFVIR 125
W + + L + + +
Sbjct: 232 KTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRK 291
Query: 126 NYGMENLRHFLRSHVNM 142
Y + R +
Sbjct: 292 EYDRRRKLVWKRLNEMG 308
>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 380
Score = 27.1 bits (59), Expect = 1.9
Identities = 23/187 (12%), Positives = 51/187 (27%), Gaps = 19/187 (10%)
Query: 7 FLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSF 66
+ T + ++ + ++A G V VD + R G AD
Sbjct: 136 LVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIM----SPVLSRPLELG---ADIV 188
Query: 67 SLNAHKWFFATLDCCCL-----WATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKLW 121
+A K+ D + + + D + L R +++ L
Sbjct: 189 MHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCL-RGIKTMALR 247
Query: 122 FVIRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPV----- 176
+ + +L SH + +++ + + F
Sbjct: 248 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSK 307
Query: 177 -LMDKLK 182
L++ K
Sbjct: 308 HLVETTK 314
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 26.6 bits (58), Expect = 2.5
Identities = 24/207 (11%), Positives = 62/207 (29%), Gaps = 14/207 (6%)
Query: 18 TAVDPLKPLCDVA-KQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFA 76
+ L L ++ +Q V A G + + + + F
Sbjct: 28 SFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFT 87
Query: 77 TLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKL-------------WFV 123
++ L+ + LS+ F L++ + +
Sbjct: 88 NVNSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSI 147
Query: 124 IRNYGMENLRHFLRSHVNMARLFERLVSGDKRFEVVFPCHFAVVCFRVSPLPVLMDKLKT 183
I G++N + F +N + +R+++ ++ F + + + + +L
Sbjct: 148 IPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQ 207
Query: 184 KYENCLLSEEEQINEFNRELLESINAS 210
+ L+ +F + E I+
Sbjct: 208 FTFDLLIKSHMVSVDFPEMMAEIISVQ 234
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 26.5 bits (57), Expect = 3.2
Identities = 14/148 (9%), Positives = 33/148 (22%), Gaps = 2/148 (1%)
Query: 3 LIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEG 62
++ C T ++ + L ++ + G D AY G A E +
Sbjct: 174 VVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA 233
Query: 63 AD--SFSLNAHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKL 120
+++ F + T + + + +
Sbjct: 234 MHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASV 293
Query: 121 WFVIRNYGMENLRHFLRSHVNMARLFER 148
I + R+
Sbjct: 294 VATILSNDALRAIWEQELTDMRQRIQRM 321
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 26.2 bits (57), Expect = 3.6
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 8/121 (6%)
Query: 4 IPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGA 63
P + + + T + L +A + + + +A F E D V
Sbjct: 15 EPPNVLVSRPSMPFTEASMMMSLTKLADKELVHM---IGWAKKIPGFVELSLL-DQVRLL 70
Query: 64 DSFSLN----AHKWFFATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLK 119
+S + W ++A + +++ + +++ D + + FR LK
Sbjct: 71 ESCWMEVLMVGLMWRSIDHPGKLIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELK 130
Query: 120 L 120
L
Sbjct: 131 L 131
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 26.4 bits (56), Expect = 3.8
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 199 FNRELLESINASGKAYMTNVVLGGIYAIRFATGATLTEE 237
++ +N Y + G +R T E+
Sbjct: 290 LENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEK 328
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 25.4 bits (55), Expect = 5.6
Identities = 21/155 (13%), Positives = 42/155 (27%), Gaps = 29/155 (18%)
Query: 14 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKW 73
T + + L ++A + + +A F + D L W
Sbjct: 28 TRPFSEASMMGLLTNLADRE---LVHMINWAKRVPGFVDLTL-------HDQVHLLECAW 77
Query: 74 F----------FATLDCCCLWATNPEYLKNKATESKPVVDYKDWQITLSRSFRSLKL--- 120
L+A N +N+ + +V+ D + S FR + L
Sbjct: 78 LEILMIGLVWRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGE 137
Query: 121 ------WFVIRNYGMENLRHFLRSHVNMARLFERL 149
++ N G+ + R+
Sbjct: 138 EFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRV 172
>d1qjwa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Trichoderma
reesei, Cel6a [TaxId: 51453]}
Length = 362
Score = 25.7 bits (56), Expect = 6.5
Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 17/97 (17%)
Query: 36 WVHVDAAYAGSACIFPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWATNPEYLKNKA 95
W+ A +A +F + N + + +
Sbjct: 184 WLGWPANQDPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSY----------- 232
Query: 96 TESKPVVDYKDWQITLSRSFRSL---KLWFVI---RN 126
T+ V + K + + + +F+ R+
Sbjct: 233 TQGNAVYNEKLYIHAIGPLLANHGWSNAFFITDQGRS 269
>d1dvoa_ a.136.1.1 (A:) Repressor of bacterial conjugation FinO
{Escherichia coli [TaxId: 562]}
Length = 152
Score = 24.8 bits (54), Expect = 7.0
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 132 LRHFLRSHVNMARLFERLVSGDKRF 156
LR +++ + +G R+
Sbjct: 88 LRRAMKAITRSESYLCAMKAGACRY 112
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.139 0.444
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 928,797
Number of extensions: 42756
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 28
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.2 bits)