BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048441
(292 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RFV4|R1441_DANRE Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio
GN=rnf144aa PE=3 SV=1
Length = 293
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 154 CPVTGCQGVLEPEYCRNILPQQVM-------FCAKCKVPWHTDMKCED---FQNLNENEN 203
CP + CQ V + + +LPQ V FC+ CK WH D C++ + E+
Sbjct: 111 CPSSTCQAVCQLKESDTVLPQLVRCSVCTLEFCSACKASWHPDQDCQENVPITSFLPGES 170
Query: 204 DDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIICR-CGTSFHYYSRADLSE 254
K + KRCP C Y+E+ GC ++C+ C +F +Y L +
Sbjct: 171 SSF-FKADDDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDD 221
>sp|P0CE10|Y4102_ARATH Putative uncharacterized protein At4g01020, chloroplastic
OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1
Length = 1787
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 179 CAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIIC 238
C +C + +H + CE ++ EN D+ LK A K CP C +EK GCN + C
Sbjct: 1680 CTRCHLEYHPLITCERYKKFKEN--PDLSLKDWAKGKDVKECPICKSTIEKTDGCNHLQC 1737
Query: 239 RCG 241
RCG
Sbjct: 1738 RCG 1740
>sp|Q2VJ60|RN19A_PIG E3 ubiquitin-protein ligase RNF19A OS=Sus scrofa GN=RNF19A PE=2
SV=1
Length = 838
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 32/169 (18%)
Query: 87 FSNHSVAENGQPSDSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQ 146
FS ++ ++NG S S + C +C+ S + I C H C DC+ +Y+ ++
Sbjct: 109 FSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPEIMTCHHRSCVDCLRQYLRIEIS 168
Query: 147 ESITTIGCPVTGCQGVLEPEYCRNILPQQVMFCAKCKVPWHTDMKCEDFQNLNENENDDI 206
ES I CP C P R IL V+ K E+F
Sbjct: 169 ESRVNISCPE--CTERFNPHDIRLILSDDVLM-----------EKYEEFM---------- 205
Query: 207 KLKKLAV---EMKWKRCPNCGYYVEKF--RGCNIIIC---RCGTSFHYY 247
L++ V + +W P+CGY V F C + C CGT F Y+
Sbjct: 206 -LRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTEFCYH 253
>sp|P50636|RN19A_MOUSE E3 ubiquitin-protein ligase RNF19A OS=Mus musculus GN=Rnf19a PE=1
SV=2
Length = 840
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 32/180 (17%)
Query: 76 HNTPLGKRKKPFSNHSVAENGQPSDSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTD 135
H+ + FS ++ ++NG S S + C +C+ S + I C H C D
Sbjct: 98 HSEMCADKNSIFSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVD 157
Query: 136 CIIKYVASKLQESITTIGCPVTGCQGVLEPEYCRNILPQQVMFCAKCKVPWHTDMKCEDF 195
C+ +Y+ ++ ES I CP C P R IL V+ K E+F
Sbjct: 158 CLRQYLRIEISESRVNISCPE--CTERFNPHDIRLILSDDVLM-----------EKYEEF 204
Query: 196 QNLNENENDDIKLKKLAV---EMKWKRCPNCGYYVEKF--RGCNIIIC---RCGTSFHYY 247
L++ V + +W P+CGY V F C + C CGT F Y+
Sbjct: 205 M-----------LRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTEFCYH 253
>sp|A4IIY1|R144A_XENTR Probable E3 ubiquitin-protein ligase RNF144A OS=Xenopus tropicalis
GN=rnf144a PE=2 SV=1
Length = 292
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 77/216 (35%), Gaps = 60/216 (27%)
Query: 97 QPSDSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESI-TTIGCP 155
+P+ +P C++C+ + + I C +CT C+ +YV ++E + T I CP
Sbjct: 7 RPTWDLALEPLVSCKLCLGEYTVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCP 66
Query: 156 VTGC------------------------------QGVLEPEYCRNILPQQ---------- 175
C + +L+P CR P
Sbjct: 67 DASCPKRGHLQENEIECMVAAEIMQKYKKLQFEKEILLDP--CRTWCPSSSCQAVCKLQE 124
Query: 176 ---------------VMFCAKCKVPWHTDMKCEDFQNLNENENDDIKL-KKLAVEMKWKR 219
+ FC+ CK WH C + + D K L ++ KR
Sbjct: 125 KGIQNPQLVQCSACDIEFCSACKANWHPGQGCPENMAITFLPGDSSSFFKSLEDDVPIKR 184
Query: 220 CPNCGYYVEKFRGCNIIICR-CGTSFHYYSRADLSE 254
CP C Y+E+ GC ++C+ C +F +Y L +
Sbjct: 185 CPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDD 220
>sp|Q9NV58|RN19A_HUMAN E3 ubiquitin-protein ligase RNF19A OS=Homo sapiens GN=RNF19A PE=1
SV=3
Length = 838
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 32/169 (18%)
Query: 87 FSNHSVAENGQPSDSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQ 146
FS ++ ++NG S S + C +C+ S + I C H C DC+ +Y+ ++
Sbjct: 109 FSTNTSSDNGLTSISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEIS 168
Query: 147 ESITTIGCPVTGCQGVLEPEYCRNILPQQVMFCAKCKVPWHTDMKCEDFQNLNENENDDI 206
ES I CP C P R IL V+ K E+F
Sbjct: 169 ESRVNISCPE--CTERFNPHDIRLILSDDVLM-----------EKYEEFM---------- 205
Query: 207 KLKKLAV---EMKWKRCPNCGYYVEKF--RGCNIIIC---RCGTSFHYY 247
L++ V + +W P+CGY V F C + C CGT F Y+
Sbjct: 206 -LRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTEFCYH 253
>sp|Q6DH94|R1442_DANRE Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio
GN=rnf144ab PE=2 SV=1
Length = 293
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 154 CPVTGCQGVLEPEYCRNILPQQVM-------FCAKCKVPWHTDMKCEDFQNLNE---NEN 203
CP + CQ V + LPQ V FC+ C+ HT C++ + EN
Sbjct: 111 CPSSSCQAVCQLNEAEVQLPQPVQCPECSLRFCSACRADCHTGQACQEMLPITTFLPGEN 170
Query: 204 DDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIICR-CGTSFHYYSRADL 252
LK E KRCP C Y+E+ GC ++C+ C +F +Y L
Sbjct: 171 GS-NLKSQEDEAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYCLESL 219
>sp|Q9Z1K5|ARI1_MOUSE E3 ubiquitin-protein ligase ARIH1 OS=Mus musculus GN=Arih1 PE=2
SV=3
Length = 555
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 52/180 (28%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESIT--TIGCPVTGCQGVLEPEY 167
C+IC + PN F C H +C C +Y+ +K+ E TI CP GC +++
Sbjct: 184 CQICYLN-YPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNT 242
Query: 168 ------------------------------------CRNILPQQV------------MFC 179
C +++ Q FC
Sbjct: 243 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQFC 302
Query: 180 AKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIICR 239
C WH +KC+ + + +DD + + K CP C +EK GCN ++CR
Sbjct: 303 FNCGENWHDPVKCKWLKKWIKKCDDDSETSNW-IAANTKECPKCHVTIEKDGGCNHMVCR 361
>sp|A2VEA3|ARI1_BOVIN E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus GN=ARIH1 PE=2 SV=1
Length = 555
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 52/180 (28%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESIT--TIGCPVTGCQGVLEPEY 167
C+IC + PN F C H +C C +Y+ +K+ E TI CP GC +++
Sbjct: 184 CQICYLN-YPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNT 242
Query: 168 ------------------------------------CRNILPQQV------------MFC 179
C +++ Q FC
Sbjct: 243 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQFC 302
Query: 180 AKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIICR 239
C WH +KC+ + + +DD + + K CP C +EK GCN ++CR
Sbjct: 303 FNCGENWHDPVKCKWLKKWIKKCDDDSETSNW-IAANTKECPKCHVTIEKDGGCNHMVCR 361
>sp|Q9Y4X5|ARI1_HUMAN E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1
SV=2
Length = 557
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 52/180 (28%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESIT--TIGCPVTGCQGVLEPEY 167
C+IC + PN F C H +C C +Y+ +K+ E TI CP GC +++
Sbjct: 186 CQICYLN-YPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNT 244
Query: 168 ------------------------------------CRNILPQQV------------MFC 179
C +++ Q FC
Sbjct: 245 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQFC 304
Query: 180 AKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIICR 239
C WH +KC+ + + +DD + + K CP C +EK GCN ++CR
Sbjct: 305 FNCGENWHDPVKCKWLKKWIKKCDDDSETSNW-IAANTKECPKCHVTIEKDGGCNHMVCR 363
>sp|B1H1E4|ARI1_XENTR E3 ubiquitin-protein ligase arih1 OS=Xenopus tropicalis GN=arih1
PE=2 SV=1
Length = 529
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 52/180 (28%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESIT--TIGCPVTGCQGVLEPEY 167
C+IC + PN F C H +C C +Y+ +K+ E TI CP GC +++
Sbjct: 158 CQICYLN-YPNSYFTGLECGHKFCMQCWSEYLTTKIIEEGMGQTISCPAHGCDILVDDNT 216
Query: 168 ------------------------------------CRNILPQQV------------MFC 179
C +++ Q FC
Sbjct: 217 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQFC 276
Query: 180 AKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIICR 239
C WH +KC+ + + +DD + + K CP C +EK GCN ++CR
Sbjct: 277 FNCGENWHDPVKCKWLKKWIKKCDDDSETSNW-IAANTKECPKCHVTIEKDGGCNHMVCR 335
>sp|Q9US46|ITT1_SCHPO E3 ubiquitin-protein ligase itt1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=itt1 PE=4 SV=1
Length = 435
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 85/252 (33%), Gaps = 88/252 (34%)
Query: 108 FVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITT---------------- 151
F C +C + + + F++ C H C C+ Y +QE + +
Sbjct: 172 FQCNVCFDEFNGTDCFQLTRCGHVSCQSCLRDYYTMCIQEGMFSQIKCIDLDCGKDAPVL 231
Query: 152 --------------------------------IGCPVTGCQGVLEPEYCRNILPQQ---V 176
I CP + CQG + + + + Q
Sbjct: 232 TLKELESIVGVQLTNRYKELEEKRRYENDSNIIFCPRSFCQGPSKRDPGQKLAICQKCDF 291
Query: 177 MFCAKCKVPWHTDMK-----------CEDFQNLNENENDD-IKLKKL--------AVEM- 215
FC+ C+ WH D+ E + N ENE + ++L+K VE
Sbjct: 292 AFCSFCQATWHGDLSPCKLEGDSKKLVEMYLNYQENEPEKALELEKRYGKRIIDRLVEQV 351
Query: 216 -------KW-----KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSELYPYR---- 259
KW +RCP C VE+ GC + C CGT F + A L E PY+
Sbjct: 352 KNDEEAEKWVLLNGQRCPTCDRVVERIDGCCHMNCLCGTHFCFLCGAYLMEQNPYKHFND 411
Query: 260 PASRQKGFRLKS 271
P S G S
Sbjct: 412 PVSSCYGMLFAS 423
>sp|Q32NS4|ARI1_XENLA E3 ubiquitin-protein ligase arih1 OS=Xenopus laevis GN=arih1 PE=2
SV=1
Length = 529
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 64/180 (35%), Gaps = 52/180 (28%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESIT--TIGCPVTGCQGVLEPEY 167
C+IC + PN F C H +C C +Y+ +K+ E TI CP GC +++
Sbjct: 158 CQICYLN-YPNSYFTGLECGHKFCMQCWGEYLTTKIIEEGMGQTISCPAHGCDILVDDNT 216
Query: 168 ------------------------------------CRNILPQQV------------MFC 179
C +++ Q FC
Sbjct: 217 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVHCKCGRQFC 276
Query: 180 AKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIICR 239
C WH +KC+ + + +DD + + K CP C +EK GCN ++CR
Sbjct: 277 FNCGENWHDPVKCKWLRKWIKKCDDDSETSNW-IAANTKECPKCHVTIEKDGGCNHMVCR 335
>sp|Q94981|ARI1_DROME Protein ariadne-1 OS=Drosophila melanogaster GN=ari-1 PE=1 SV=2
Length = 503
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 95/256 (37%), Gaps = 84/256 (32%)
Query: 48 PIKASQIFIN---------LDDYFDDDDD-----LHVLNLLPHNTPLGKRKKPFSNHSVA 93
P ++I +N L+ YFDD+ D HV+N P N ++K ++ S
Sbjct: 75 PTPTTRILLNHFKWDKEKLLEKYFDDNTDEFFKCAHVIN--PFNATEAIKQK--TSRSQC 130
Query: 94 ENGQPSDSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKL-QESI-TT 151
E CEIC S+ P +S C H +C C +Y+++K+ E + T
Sbjct: 131 EE--------------CEICF-SQLPPDSMAGLECGHRFCMPCWHEYLSTKIVAEGLGQT 175
Query: 152 IGCPVTGCQGVLEPEYCRNIL--------------------------------------- 172
I C GC +++ N++
Sbjct: 176 ISCAAHGCDILVDDVTVANLVTDARVRVKYQQLITNSFVECNQLLRWCPSVDCTYAVKVP 235
Query: 173 ---PQQV------MFCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNC 223
P++V +FC C WH +KC + + +DD + + K CP C
Sbjct: 236 YAEPRRVHCKCGHVFCFACGENWHDPVKCRWLKKWIKKCDDDSETSNW-IAANTKECPRC 294
Query: 224 GYYVEKFRGCNIIICR 239
+EK GCN ++C+
Sbjct: 295 SVTIEKDGGCNHMVCK 310
>sp|Q7Z419|R144B_HUMAN E3 ubiquitin-protein ligase RNF144B OS=Homo sapiens GN=RNF144B PE=1
SV=1
Length = 303
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 57/216 (26%)
Query: 92 VAENGQPSDSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITT 151
AEN P D P C++C+ +S ++ ++ C +CT C+ +Y+ ++E +
Sbjct: 13 TAENPTPGDL-APAPLITCKLCLCEQSLDKMTTLQECQCIFCTACLKQYMQLAIREGCGS 71
Query: 152 -IGCPVTGC--QGVLEPEY-----------------------------------CRNILP 173
I CP C G L+ C+ + P
Sbjct: 72 PITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPYRTWCPVADCQTVCP 131
Query: 174 -------QQVM---------FCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKW 217
Q V+ FC+ CK WH ++ C D Q + + L E
Sbjct: 132 VASSDPGQPVLVECPSCHLKFCSCCKDAWHAEVSCRDSQPIVL-PTEHRALFGTDAEAPI 190
Query: 218 KRCPNCGYYVEKFRGCNIIICR-CGTSFHYYSRADL 252
K+CP C Y+E+ GC ++C+ C +F +Y +L
Sbjct: 191 KQCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNL 226
>sp|Q925F3|R144A_MOUSE Probable E3 ubiquitin-protein ligase RNF144A OS=Mus musculus
GN=Rnf144a PE=1 SV=1
Length = 292
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 56/214 (26%)
Query: 97 QPSDSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESI-TTIGCP 155
+P+ DP C++C+ + I C +CT C+ +YV ++E + T I CP
Sbjct: 7 RPTWDLALDPLVSCKLCLGEYPAEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCP 66
Query: 156 VTGC--QGVLEPEYCRNILPQQVM------------------------------------ 177
C QG L+ ++ ++M
Sbjct: 67 DAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDIG 126
Query: 178 ---------------FCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLA-VEMKWKRCP 221
FC+ CK WH C + + + K+ + KRCP
Sbjct: 127 LQTPQLVQCKACDMEFCSACKARWHPGQGCPETMPITFLPGETSSAFKMEEGDAPIKRCP 186
Query: 222 NCGYYVEKFRGCNIIICR-CGTSFHYYSRADLSE 254
C Y+E+ GC ++C+ C +F +Y L +
Sbjct: 187 KCRVYIERDEGCAQMMCKNCKHAFCWYCLESLDD 220
>sp|P50876|R144A_HUMAN Probable E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens
GN=RNF144A PE=1 SV=2
Length = 292
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 56/214 (26%)
Query: 97 QPSDSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESI-TTIGCP 155
+P+ DP C++C+ + I C +CT C+ +YV ++E + T I CP
Sbjct: 7 RPTWDLALDPLVSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCP 66
Query: 156 VTGC--QGVLEPEYCRNILPQQVM------------------------------------ 177
C QG L+ ++ ++M
Sbjct: 67 DAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDVG 126
Query: 178 ---------------FCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVE-MKWKRCP 221
FC+ CK WH C + + + K+ + KRCP
Sbjct: 127 LQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMPITFLPGETSAAFKMEEDDAPIKRCP 186
Query: 222 NCGYYVEKFRGCNIIICR-CGTSFHYYSRADLSE 254
C Y+E+ GC ++C+ C +F +Y L +
Sbjct: 187 KCKVYIERDEGCAQMMCKNCKHAFCWYCLESLDD 220
>sp|Q6NW85|ARI1L_DANRE E3 ubiquitin-protein ligase arih1l OS=Danio rerio GN=arih1l PE=2
SV=1
Length = 533
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 81/233 (34%), Gaps = 72/233 (30%)
Query: 57 NLDDYFDDDDDLHVLNLLPHNTPLGKRKKPFSNHSVAENGQPSDSHKNDPSFVCEICVES 116
NLD F + HV+N P P + +P S S +++ C+IC +
Sbjct: 129 NLDKLFSE---CHVIN--PSKKP---KTRPMSTRSSSQD------------LPCQICYLN 168
Query: 117 KSPNESFRIKGCSHSYCTDCIIKYVASKLQESIT--TIGCPVTGCQGVLEPEY------- 167
PN F C H +C C Y+ +K+ E TI CP C +++
Sbjct: 169 -YPNSYFTGLECGHKFCMQCWGDYLTTKIIEEGMGQTISCPAHNCDILVDDNTVMRLITD 227
Query: 168 -----------------------------CRNILPQQV------------MFCAKCKVPW 186
C +++ Q FC C W
Sbjct: 228 SKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQFCFNCGENW 287
Query: 187 HTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIICR 239
H +KC+ + + +DD + + K CP C +EK GCN ++CR
Sbjct: 288 HDPVKCKWLRKWIKKCDDDSETSNW-IAANTKECPKCHVTIEKDGGCNHMVCR 339
>sp|D3YYI7|RN217_MOUSE Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus
GN=Rnf217 PE=3 SV=2
Length = 515
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 12/78 (15%)
Query: 175 QVMFCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMK-----WKRCPNCGYYVEK 229
Q+++C KC PWH + C++++ D L+ A E++ ++CP C ++++
Sbjct: 352 QLIWCFKCHSPWHEGVNCKEYK------KGDKLLRHWASEIEHGQRNAQKCPKCKIHIQR 405
Query: 230 FRGCNIIIC-RCGTSFHY 246
GC+ + C +C T+F Y
Sbjct: 406 TEGCDHMTCSQCNTNFCY 423
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 108 FVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164
+C +C+E K + C + C +C+ Y++S++Q I CPVT C LE
Sbjct: 234 LMCRVCLEDKPIKP---LPCCKKAVCEECLKIYLSSQVQLGQVEIKCPVTECFEFLE 287
>sp|Q1L8L6|RN19B_DANRE E3 ubiquitin-protein ligase RNF19B OS=Danio rerio GN=rnf19b PE=3
SV=2
Length = 701
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 30/169 (17%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCR 169
C +C+ + + ++GCSH C C+ +Y+ ++ ES + CP
Sbjct: 107 CPLCLVRQPAEQLPELQGCSHRSCLCCLRQYLRIEITESRVQLSCP-------------- 152
Query: 170 NILPQQVMFCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAV--EMKWKRCPNCGYYV 227
CA+ PW + +D NL E + + + LA + +W P+CG+ V
Sbjct: 153 --------ECAERLAPWQVALILDD-PNLMEKYEEFLLRRCLASDPDCRWCPAPDCGFAV 203
Query: 228 --EKFRGCNIIICR---CGTSFHYYSRADLSELYPYRPASRQKGFRLKS 271
C ++CR CG F Y+ + A +Q+ L++
Sbjct: 204 IASGCASCPRLVCRREGCGAEFCYHCKQAWHPNQTCDSARQQRALSLRT 252
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 31/105 (29%)
Query: 178 FCAKCKVPWHTDMKCEDFQ-----------------NLNENENDDIKLKKLAVEMKWKRC 220
FC CK WH + C+ + + DDI K C
Sbjct: 225 FCYHCKQAWHPNQTCDSARQQRALSLRTHSNHSPSYTAEQGHTDDI-----------KPC 273
Query: 221 PNCGYYVEKFR--GCNIIICR-CGTSFHYYSRADLSELYPYRPAS 262
P CG Y+ K CN + C CG F + ++S+L+ P+
Sbjct: 274 PRCGAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSG 318
>sp|Q9SKC3|ARI9_ARATH Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana
GN=ARI9 PE=2 SV=1
Length = 543
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 83/244 (34%), Gaps = 77/244 (31%)
Query: 59 DDYFDDDDDLHVLNLLPHNTPLGKRKKPFSNHSVAENGQPSDSHKNDPSFVCEICVESKS 118
D++F D++ + +G K+P V NG D + C IC ES +
Sbjct: 89 DEWFTDEERIR--------KAVGLLKEPV----VDFNGGEKDKKCRKVNIQCGICFESYT 136
Query: 119 PNESFRIKGCSHSYCTDCIIKYVASKLQE--SITTIGCPVTGCQGV-------------L 163
E R+ C H YC C Y+ +K+++ + CP C +
Sbjct: 137 REEIARV-SCGHPYCKTCWAGYITTKIEDGPGCLRVKCPEPSCSAAVGKDMIEDVTETKV 195
Query: 164 EPEYCRNILPQQV------------------------------------MFCAKCKVPWH 187
+Y R IL V FC C H
Sbjct: 196 NEKYSRYILRSYVEDGKKIKWCPSPGCGYAVEFGGSESSSYDVSCLCSYRFCWNCSEDAH 255
Query: 188 TDMKCED-----FQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIICR--C 240
+ + C+ F+N +E+EN + L K CP C +EK GCN + C C
Sbjct: 256 SPVDCDTVSKWIFKNQDESENKNWMLANS------KPCPECKRPIEKNDGCNHMTCSAPC 309
Query: 241 GTSF 244
G F
Sbjct: 310 GHEF 313
>sp|Q9NWF9|RN216_HUMAN E3 ubiquitin-protein ligase RNF216 OS=Homo sapiens GN=RNF216 PE=1
SV=3
Length = 866
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 179 CAKCKVPW--HTDMKCEDFQNLNENENDDIK----LKKLAVEMKWKRCPNCGYYVEKFRG 232
C KC+ W H + CE+ E DDIK +++ + ++C CG + K G
Sbjct: 633 CRKCQGLWKEHNGLTCEELA-----EKDDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEG 687
Query: 233 CNIIICRCGTSFHYYSRADLS 253
CN + CRCG Y R ++
Sbjct: 688 CNRMSCRCGAQMCYLCRVSIN 708
>sp|P58283|RN216_MOUSE E3 ubiquitin-protein ligase RNF216 OS=Mus musculus GN=Rnf216 PE=1
SV=3
Length = 853
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 179 CAKCKVPW--HTDMKCEDFQNLNENENDDIK----LKKLAVEMKWKRCPNCGYYVEKFRG 232
C KC+ W H + CE+ E DDIK +++ + ++C CG + K G
Sbjct: 621 CRKCQGLWKEHNGLTCEELA-----EKDDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEG 675
Query: 233 CNIIICRCGTSFHYYSRADLS 253
CN + CRCG Y R ++
Sbjct: 676 CNRMSCRCGAQMCYLCRVSIN 696
>sp|A5PK27|R144B_BOVIN E3 ubiquitin-protein ligase RNF144B OS=Bos taurus GN=RNF144B PE=2
SV=1
Length = 304
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 84/218 (38%), Gaps = 59/218 (27%)
Query: 91 SVAENGQPSDSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESIT 150
+ AEN P D P C++C+ +S ++ ++ C +CT C+ +Y+ ++E
Sbjct: 13 TAAENPTPGDL-ALVPLVTCKLCLCEQSLDKMTTLQECRCIFCTACLKQYMQLAIREGCG 71
Query: 151 T-IGCPVTGC--QGVLEP--------------------------EYCRNILP-------- 173
+ I CP C G L+ + CR P
Sbjct: 72 SPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPCRTWCPVADCQTVC 131
Query: 174 --------QQVM---------FCAKCKVPWHTDMKCEDFQ-NLNENENDDIKLKKLAVEM 215
Q V+ FC+ CK WH ++ C D Q + E+ L +
Sbjct: 132 PVATSDPGQPVLVECPSCHLKFCSCCKDAWHAEVSCRDSQPGILPTEHG--TLFGTETDA 189
Query: 216 KWKRCPNCGYYVEKFRGCNIIICR-CGTSFHYYSRADL 252
K+CP C Y+E+ GC ++C+ C +F +Y +L
Sbjct: 190 PIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQNL 227
>sp|Q6PFJ9|ARI1_DANRE E3 ubiquitin-protein ligase arih1 OS=Danio rerio GN=arih1 PE=2 SV=1
Length = 527
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 62/180 (34%), Gaps = 52/180 (28%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESIT--TIGCPVTGCQGVLEPEY 167
C+IC + PN F C H +C C Y+ +K+ E TI CP C +++
Sbjct: 156 CQICYLN-YPNSYFTGLECGHKFCMQCWGDYLTTKIIEEGMGQTISCPAHSCDILVDDNT 214
Query: 168 ------------------------------------CRNILPQQV------------MFC 179
C +++ Q FC
Sbjct: 215 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKCGRQFC 274
Query: 180 AKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIIICR 239
C WH +KC+ + + +DD + + K CP C +EK GCN ++CR
Sbjct: 275 FNCGENWHDPVKCKWLRKWIKKCDDDSETSNW-IAANTKECPKCHVTIEKDGGCNHMVCR 333
>sp|Q8TC41|RN217_HUMAN Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens
GN=RNF217 PE=2 SV=3
Length = 275
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Query: 175 QVMFCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMK-----WKRCPNCGYYVEK 229
Q ++C KC PWH + C++++ D L+ A E++ ++CP C ++++
Sbjct: 87 QFVWCFKCHSPWHEGVNCKEYK------KGDKLLRHWASEIEHGQRNAQKCPKCKIHIQR 140
Query: 230 FRGCNIIIC-RCGTSFHY 246
GC+ + C +C T+F Y
Sbjct: 141 TEGCDHMTCSQCNTNFCY 158
>sp|Q6ZMZ0|RN19B_HUMAN E3 ubiquitin-protein ligase RNF19B OS=Homo sapiens GN=RNF19B PE=1
SV=2
Length = 732
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 60/166 (36%), Gaps = 31/166 (18%)
Query: 87 FSNHSVAENGQPSDSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQ 146
F + AE G P C +C+ P + R+ C H C DC+ Y+ ++
Sbjct: 101 FDDEEAAEGGGPGAEE-----VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEIS 155
Query: 147 ESITTIGCPVTGCQGVLEPEYCRNILPQQVMFCAKCKVPWHTDMKCEDFQNLNENENDDI 206
ES I CP C L P R +L + K E+F +D
Sbjct: 156 ESRVPISCPE--CSERLNPHDIRLLLADPPLM-----------HKYEEFMLRRYLASDP- 201
Query: 207 KLKKLAVEMKWKRCPNCGYYVEKF--RGCNIIICR---CGTSFHYY 247
+ +W P+CGY V + C + C C T F Y+
Sbjct: 202 -------DCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH 240
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 175 QVMFCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAV---------EMKWKRCPNCGY 225
Q FC CK WH + C D + ++ K + K CP C
Sbjct: 234 QTEFCYHCKQIWHPNQTC-DMARQQRAQTLRVRTKHTSGLSYGQESGPADDIKPCPRCSA 292
Query: 226 YVEKFR--GCNIIICR-CGTSFHYYSRADLSELYPYRPA 261
Y+ K CN + C CG F + ++S+L+ P+
Sbjct: 293 YIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPS 331
>sp|Q9LVX0|ARI3_ARATH Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana
GN=ARI3 PE=2 SV=1
Length = 537
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 59/224 (26%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITT-IGCPVTGCQGVLEPEYC 168
C++C+E P+ C H +C DC I + K+ E + I C C+ + + +
Sbjct: 121 CDVCMEDDLPSNVMTRMECGHRFCNDCWIGHFTVKINEGESKRILCMAHECKAICDEDVV 180
Query: 169 RNILPQQV--------------------------------------------------MF 178
R ++ ++ F
Sbjct: 181 RKLVSPELADRYDRFLIESYVEDNNMVKWCPSKPHCGSAIRKIEDGHDVVEVGCSCGLQF 240
Query: 179 CAKCKVPWHTDMKCEDFQNLN---ENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNI 235
C C H+ C ++ E+E++ + + + K CP C ++K GCN+
Sbjct: 241 CFSCLSESHSPCSCLMWKLWKKKCEDESETVNW----ITVNTKLCPKCSKPIQKRDGCNL 296
Query: 236 IICRCGTSFHYYSRADLSELYPYRPASRQKGFRLKSRDPVRTLE 279
+ C+CG F + + Y + R K + VR LE
Sbjct: 297 MTCKCGQHFCWLCGQATGRDHTYTSIAGHSCGRYKD-EKVRQLE 339
>sp|Q4KLT0|RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis
GN=rnf217 PE=2 SV=1
Length = 282
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 12/78 (15%)
Query: 175 QVMFCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMK-----WKRCPNCGYYVEK 229
Q ++C +C PWH + C +++ D L+ A E++ ++CP C ++++
Sbjct: 119 QFIWCFRCHAPWHEGVNCREYK------KGDKLLRHWANEIEHGQRNAQKCPRCKVHIQR 172
Query: 230 FRGCNIIIC-RCGTSFHY 246
GC+ + C +C T+F Y
Sbjct: 173 TEGCDHMTCSQCNTNFCY 190
>sp|Q9SKC4|ARI10_ARATH Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana
GN=ARI10 PE=2 SV=1
Length = 514
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 72/214 (33%), Gaps = 63/214 (29%)
Query: 100 DSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQES--ITTIGCPVT 157
D + + C IC ES + E + C H YC C Y+ +K+++ + CP
Sbjct: 111 DVNGTEVDIQCGICFESYTRKEIASV-SCGHPYCKTCWTGYITTKIEDGPGCLRVKCPEP 169
Query: 158 GCQGVL-------------EPEYCRNILPQQV---------------------------- 176
C V+ + +Y R L V
Sbjct: 170 SCYAVVGQDMIDEVTEKKDKDKYYRYFLRSYVEDGKKMKWCPSPGCECAVEFGESSGYDV 229
Query: 177 ------MFCAKCKVPWHTDMKCED-----FQNLNENENDDIKLKKLAVEMKWKRCPNCGY 225
FC C H+ + CE F+N +E+EN + L K CP C
Sbjct: 230 ACLCSYRFCWNCSEDAHSPVDCETVSKWIFKNQDESENKNWILANS------KPCPKCKR 283
Query: 226 YVEKFRGCNIIIC--RCGTSFHYYSRADLSELYP 257
+EK GCN + C CG F + S+ Y
Sbjct: 284 PIEKSHGCNHMTCSASCGHRFCWICGKSYSDHYA 317
>sp|Q8BKD6|R144B_MOUSE E3 ubiquitin-protein ligase RNF144B OS=Mus musculus GN=Rnf144b PE=2
SV=2
Length = 301
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 178 FCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIII 237
FC+ CK WH + C D Q+ L + K+CP C Y+E+ GC ++
Sbjct: 152 FCSCCKDAWHEESSCRDSQSAMPEHG---ALFGTDADAPIKQCPVCRIYIERNEGCAQMM 208
Query: 238 CR-CGTSFHYYSRADL 252
C+ C +F +Y +L
Sbjct: 209 CKNCKHTFCWYCLQNL 224
>sp|Q9UBS8|RNF14_HUMAN E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens GN=RNF14 PE=1
SV=1
Length = 474
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 76/231 (32%), Gaps = 75/231 (32%)
Query: 104 NDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQES-ITTIGCPVTGCQGV 162
N F+C IC K +E C H YC C+ Y ++++ + + CP C V
Sbjct: 214 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSV 273
Query: 163 LEPEYCRNILPQQVM--------------------------------------------- 177
P + ++ ++
Sbjct: 274 ATPGQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPGCTMGICSSCN 333
Query: 178 --FCAKCKVPWH-------TDMKCEDFQN--LNENENDDIKL---------KKLAVEM-- 215
FC C++ +H T K D +N L +E + L +K EM
Sbjct: 334 FAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMES 393
Query: 216 -KW-----KRCPNCGYYVEKFRGCNIIICR-CGTSFHYYSRADLSELYPYR 259
+W K CP CG +EK GCN + C C F + LS PY+
Sbjct: 394 KEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMGSLSRANPYK 444
>sp|Q9SKC2|ARI11_ARATH Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana
GN=ARI11 PE=2 SV=1
Length = 542
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 83/242 (34%), Gaps = 67/242 (27%)
Query: 100 DSHKNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQES--ITTIGCPVT 157
D + + C IC ES + E R+ C H YC C Y+ +K+++ + CP
Sbjct: 129 DVNGTEVDIQCGICFESYTRKEIARV-SCGHPYCKTCWTGYITTKIEDGPGCLRVKCPEP 187
Query: 158 GCQGVL-------------EPEYCRNILPQQV---------------------------- 176
C V+ + +Y R L V
Sbjct: 188 SCYAVVGQDMIDEVTEKKDKDKYYRYFLRSYVEDGKKMKWCPSPGCEYAVEFGVNGSSSY 247
Query: 177 --------MFCAKCKVPWHTDMKCED-----FQNLNENENDDIKLKKLAVEMKWKRCPNC 223
FC C H+ + CE +N +E+EN + L K K CP C
Sbjct: 248 DVSCLCSYKFCWNCCEDAHSPVDCETVSKWLLKNKDESENMNWILAKT------KPCPKC 301
Query: 224 GYYVEKFRGCNIIICRCGTSFHYYSRADLSELYPYRPASRQKGFRLKSRDPVRTLEYFDF 283
+EK GCN + C HY+ A L L ++ + F+ + D + D
Sbjct: 302 KRPIEKNTGCNHMSCS-APCRHYFCWACLQPLSDHKACN---AFKADNEDETKRKRAKDA 357
Query: 284 LD 285
+D
Sbjct: 358 ID 359
>sp|A2A7Q9|RN19B_MOUSE E3 ubiquitin-protein ligase RNF19B OS=Mus musculus GN=Rnf19b PE=1
SV=2
Length = 732
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 26/143 (18%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCR 169
C +C+ P + R+ C H C DC+ Y+ ++ ES I CP C L P R
Sbjct: 116 CPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPE--CSERLNPHDIR 173
Query: 170 NILPQQVMFCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEK 229
+L + K E+F +D + +W P+CGY V
Sbjct: 174 LLLADPPLM-----------HKYEEFMLRRYLASDP--------DCRWCPAPDCGYAVIA 214
Query: 230 F--RGCNIIICR---CGTSFHYY 247
+ C + C C T F Y+
Sbjct: 215 YGCASCPKLTCEREGCQTEFCYH 237
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 175 QVMFCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAV---------EMKWKRCPNCGY 225
Q FC CK WH + C D + ++ K + K CP C
Sbjct: 231 QTEFCYHCKQIWHPNQTC-DMARQQRAQTLRVRTKHTSGLSYGQESGPADDIKPCPRCSA 289
Query: 226 YVEKFR--GCNIIICR-CGTSFHYYSRADLSELYPYRPA 261
Y+ K CN + C CG F + ++S+L+ P+
Sbjct: 290 YIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPS 328
>sp|Q9JI90|RNF14_MOUSE E3 ubiquitin-protein ligase RNF14 OS=Mus musculus GN=Rnf14 PE=2
SV=2
Length = 485
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 75/231 (32%), Gaps = 75/231 (32%)
Query: 104 NDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQES-ITTIGCPVTGCQGV 162
N F+C IC K ++ C H YC C+ Y ++++ + + CP C V
Sbjct: 215 NSKLFLCSICFCEKLGSDCMYFLECKHVYCKACLKDYFEIQIKDGQVKCLNCPEPQCPSV 274
Query: 163 LEPEYCRNIL--------------------------------------PQQVM------- 177
P + ++ P M
Sbjct: 275 ATPGQVKELVEADLFARYDRLLLQSTLDLMADVVYCPRPCCQLPVMQEPGGTMAICSSCN 334
Query: 178 --FCAKCKVPWH-------TDMKCEDFQNLNENENDDIK-----------LKKLAVEMK- 216
FC C++ +H T K D +N ++ K ++K EM+
Sbjct: 335 FAFCTLCRLTYHGLSPCKVTAEKLIDLRNEYLQADEATKRFLEQRYGKRVIQKALEEMES 394
Query: 217 --W-----KRCPNCGYYVEKFRGCNIIICR-CGTSFHYYSRADLSELYPYR 259
W K CP CG ++K GCN + C C F + LS PYR
Sbjct: 395 KDWLEKNSKSCPCCGTPIQKLDGCNKMTCTGCMQYFCWICMGSLSRANPYR 445
>sp|P36096|TUL1_YEAST Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1
SV=1
Length = 758
Score = 38.1 bits (87), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 19/103 (18%)
Query: 73 LLP-HNTPLGKRK-KPFSNHSVAENGQPSDSHKND--------PSFVCEICVESKSPNES 122
LP H P G KP SN ++E+G + H D P ++ EI K S
Sbjct: 664 FLPKHTIPDGYSYFKPLSNEYISEHGGGTAEHTVDCAICMSDVPIYIEEIPETHKVDQHS 723
Query: 123 FRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165
+ + C+H + T C+ ++ KLQ CPV C+ L P
Sbjct: 724 YMVTPCNHVFHTSCLENWMNYKLQ-------CPV--CRSPLPP 757
>sp|O76924|ARI2_DROME Protein ariadne-2 OS=Drosophila melanogaster GN=ari-2 PE=2 SV=1
Length = 509
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 63/182 (34%), Gaps = 52/182 (28%)
Query: 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITT-IGCPVTGCQGVLEP 165
S +C +C S+ ++ + + C HS+C DC Y +++ + I+T IGC C +
Sbjct: 150 SQMCPVCASSQLGDKFYSL-ACGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPE 208
Query: 166 EYCRNILPQQVM------------------------------------------------ 177
+ ++ + VM
Sbjct: 209 DLVLTLVTRPVMRDKYQQFAFKDYVKSHPELRFCPGPNCQIIVQSSEISAKRAICKACHT 268
Query: 178 -FCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNII 236
FC +C + +H C+ + DD + + K CP C +EK GCN +
Sbjct: 269 GFCFRCGMDYHAPTDCQVIKKWLTKCADDSETANY-ISAHTKDCPKCHICIEKNGGCNHM 327
Query: 237 IC 238
C
Sbjct: 328 QC 329
>sp|Q22431|ARI2_CAEEL Probable protein ariadne-2 OS=Caenorhabditis elegans GN=T12E12.1
PE=3 SV=2
Length = 482
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 178 FCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCNIII 237
FC KC +H CE + DD + + K CP C +EK GCN I
Sbjct: 246 FCVKCGADYHAPTSCETIKQWMTKCADDSETANY-ISAHTKDCPQCHSCIEKAGGCNHIQ 304
Query: 238 C-RCGTSFHYYSRADL----SELYP---YR--PASRQKGFRLKSRDPV-RTLEYFD 282
C RC F + D SE Y Y+ P+ + +K+R + + L YF+
Sbjct: 305 CTRCRHHFCWMCFGDWKSHGSEYYECSRYKENPSVAAEANHVKARRALEKYLHYFE 360
>sp|Q924T7|RNF31_MOUSE E3 ubiquitin-protein ligase RNF31 OS=Mus musculus GN=Rnf31 PE=1
SV=2
Length = 1066
Score = 37.0 bits (84), Expect = 0.19, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 162 VLEPEYCRNILPQ-QVMFCAKCKVPW---HTDMKCEDFQNLNENENDDIKLKKLAVEMKW 217
+ E E PQ FC +CK W H CEDFQN + + + + LA+ ++
Sbjct: 801 IYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRTNDPEYQAQGLAMYLQE 860
Query: 218 K--RCPNCGYYVEKFRG 232
CP C + RG
Sbjct: 861 NGIDCPKCKFSYALARG 877
>sp|Q96EP0|RNF31_HUMAN E3 ubiquitin-protein ligase RNF31 OS=Homo sapiens GN=RNF31 PE=1
SV=1
Length = 1072
Score = 36.2 bits (82), Expect = 0.28, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 162 VLEPEYCRNILPQ-QVMFCAKCKVPW---HTDMKCEDFQNLNENENDDIKLKKLAVEMKW 217
+ E E PQ FC +CK W H CEDFQN + + + + LA+ ++
Sbjct: 807 IYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMNDPEYQAQGLAMYLQE 866
Query: 218 K--RCPNCGYYVEKFRG 232
CP C + RG
Sbjct: 867 NGIDCPKCKFSYALARG 883
>sp|Q08B84|RN19B_XENLA E3 ubiquitin-protein ligase RNF19B OS=Xenopus laevis GN=rnf19b PE=2
SV=2
Length = 687
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 70/216 (32%), Gaps = 67/216 (31%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCR 169
C +C+ + P E + C H C C+ +Y+ ++ ES + CP C L P++ R
Sbjct: 95 CPLCLVRQPPEEIPELLSCRHRSCLRCLRQYLRIEICESRVNLRCP--ECAERLSPQHVR 152
Query: 170 NILPQQVM---------------------------------------------------- 177
IL ++
Sbjct: 153 AILRDPLLTRKYEEFLLRRCLAADPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCRTE 212
Query: 178 FCAKCKVPWHTDMKCEDFQNLNENENDDIKLK---------KLAVEMKWKRCPNCGYYVE 228
FC CK WH + C D + ++ K + K CP C Y+
Sbjct: 213 FCYHCKHVWHPNQTC-DMARQQRAPSLGVRRKHPSGISYGQESGSADDMKSCPRCSAYII 271
Query: 229 KFR--GCNIIICR-CGTSFHYYSRADLSELYPYRPA 261
K CN + C CG F + ++S+L+ P+
Sbjct: 272 KMNDGSCNHMTCSVCGCEFCWLCMKEISDLHYLSPS 307
>sp|Q9BYM8|HOIL1_HUMAN RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo
sapiens GN=RBCK1 PE=1 SV=2
Length = 510
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 62/199 (31%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVT----GCQG---- 161
C +C +P E+ ++ C H++C +C+ + + + ++ CP C G
Sbjct: 282 CPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVS---CPFIDNTYSCSGKLLE 338
Query: 162 -----VLEPE-YCR------NILPQQVMFCAKCKVP----W------------------- 186
+L PE Y R +I + F CK P W
Sbjct: 339 REIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVN 398
Query: 187 -------HTDMKCEDFQ-NLNENENDDIK-------LKKLAVEMKWKRCPNCGYYVEKFR 231
H M C+++Q +L +D+ LK + + + RCP C V+K
Sbjct: 399 CLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKD 458
Query: 232 GCNIIICR-CGTSFHYYSR 249
GC+ I C C T + ++
Sbjct: 459 GCDWIRCTVCHTEICWVTK 477
>sp|P36113|YKZ7_YEAST RING finger protein YKR017C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YKR017C PE=1 SV=1
Length = 551
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 64/191 (33%), Gaps = 60/191 (31%)
Query: 103 KNDPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQES--ITTI-------- 152
KND F C IC + K E+F ++ C H YC +C Y+ KL E IT +
Sbjct: 174 KND--FTCIICCDKKDT-ETFALE-CGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKN 229
Query: 153 --------------------------------GCPVTGCQGVLE-------PEYCRNILP 173
CP C+ ++ PEY R
Sbjct: 230 EDIDKVMGHPSSSKLMDSSIKSFVQKHNRNYKWCPFADCKSIVHLRDTSSLPEYTRLHYS 289
Query: 174 QQV------MFCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYV 227
V FC C H+ C+ + + ++ + K CP C +
Sbjct: 290 PFVKCNSFHRFCFNCGFEVHSPADCKITTAWVKKARKESEILNWVLSHT-KECPKCSVNI 348
Query: 228 EKFRGCNIIIC 238
EK GCN ++C
Sbjct: 349 EKNGGCNHMVC 359
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 28/143 (19%)
Query: 3 AQKIAQIEVLDLEEEDEIFIKSTSQKGKRKRSAISVGQHIDDQRGPIKASQIFINLDDYF 62
A+ + ++ +E + +T ++G+ R A++ + S F++L +F
Sbjct: 483 AEPTEPVAPVETDEGSNVSTTATRREGRNSRGAVTFEE---------SGSLPFLSLAQFF 533
Query: 63 ---DDDDDLHVLNLLPHNTPLGKRKKPFSNHSVAENGQPSDSHKNDPSFVCEICVESKSP 119
+DDDD P G K+ N S G+ ND C +C+ +
Sbjct: 534 LLNEDDDDQ----------PRGLTKEQIDNLSTRNFGE------NDALKTCSVCITEYTE 577
Query: 120 NESFRIKGCSHSYCTDCIIKYVA 142
R CSH Y CI ++++
Sbjct: 578 GNKLRKLPCSHEYHIHCIDRWLS 600
>sp|Q6T486|RBRA_DICDI Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium
discoideum GN=rbrA PE=3 SV=1
Length = 520
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTI--GCPVTGCQGVLEPEY 167
C IC+E P ++F + C+H YC C Y+ K+ E I CP C+ ++ +
Sbjct: 139 CLICLEDYPPTQTFALI-CNHRYCLPCYKNYLEIKVSEGPECIYTPCPAPKCKVIVHQDA 197
Query: 168 CRNILPQQVM 177
+ I+ +V
Sbjct: 198 FKQIVSPEVF 207
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 31/143 (21%)
Query: 3 AQKIAQIEVLDLEEEDEIFIKSTSQKGKRKRSAISVGQHIDDQRGPIKASQIFINLDDYF 62
A+ +A +E +E + +T ++G+ R +++ + S F++L +F
Sbjct: 621 AEPVAPVES---DEGSNVATSATRREGRNSRGGVTLEE---------SGSLPFLSLAQFF 668
Query: 63 ---DDDDDLHVLNLLPHNTPLGKRKKPFSNHSVAENGQPSDSHKNDPSFVCEICVESKSP 119
+DDDD P G K+ N S G+ ND C +C+ +
Sbjct: 669 LLNEDDDD----------QPRGLTKEQIDNLSTRNYGE------NDALKTCSVCITEYTE 712
Query: 120 NESFRIKGCSHSYCTDCIIKYVA 142
R CSH Y CI ++++
Sbjct: 713 GNKLRKLPCSHEYHIHCIDRWLS 735
>sp|Q753V5|RAD5_ASHGO DNA repair protein RAD5 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAD5 PE=3 SV=2
Length = 1085
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 110 CEICV-ESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYC 168
C IC E+ SP S C H +C C+++Y+ + ++ TI CP C+ +E Y
Sbjct: 832 CSICTCEAISPLTSVVFTRCGHPFCESCLLEYIQFQNKKGSETI-CP--NCRAAVESRYL 888
>sp|Q9QXK2|RAD18_MOUSE E3 ubiquitin-protein ligase RAD18 OS=Mus musculus GN=Rad18 PE=1
SV=2
Length = 509
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 110 CEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCR 169
C IC E N + I CSH+YC+ CI K+++ K Q CP T C V EP+
Sbjct: 25 CGICFEYF--NIAVIIPQCSHNYCSLCIRKFLSYKTQ-------CP-TCCVAVTEPDLRN 74
Query: 170 NIL 172
N L
Sbjct: 75 NRL 77
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 106 PSFVCEICV-ESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCP 155
PSF C IC E P + I C H++C C+ +Y+ + Q +I CP
Sbjct: 854 PSFECAICTTECIEPLSAVSITECLHTFCEPCLAEYIEFQ-QNKKLSINCP 903
>sp|Q6GZQ2|073L_FRG3G Uncharacterized protein 073L OS=Frog virus 3 (isolate Goorha)
GN=FV3-073L PE=4 SV=1
Length = 324
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 17/73 (23%)
Query: 179 CAKCKVPWHTD----MKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKFRGCN 234
CA CK + D K ED +++ A++ + +CP C VEK GCN
Sbjct: 155 CAYCKALMNIDKPHTCKAEDLESIK------------AMDSNYVKCPECKKRVEKIDGCN 202
Query: 235 IIICR-CGTSFHY 246
+ C C T+F+Y
Sbjct: 203 DMTCAYCSTNFNY 215
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,462,057
Number of Sequences: 539616
Number of extensions: 4957646
Number of successful extensions: 12747
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 109
Number of HSP's that attempted gapping in prelim test: 12559
Number of HSP's gapped (non-prelim): 258
length of query: 292
length of database: 191,569,459
effective HSP length: 116
effective length of query: 176
effective length of database: 128,974,003
effective search space: 22699424528
effective search space used: 22699424528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)