Query 048441
Match_columns 292
No_of_seqs 241 out of 1260
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:35:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.6 1.1E-16 3.7E-21 110.0 -0.5 42 215-256 4-48 (60)
2 1wim_A KIAA0161 protein; ring 99.5 3.3E-14 1.1E-18 106.9 4.4 70 106-175 4-76 (94)
3 4ap4_A E3 ubiquitin ligase RNF 98.9 8E-11 2.7E-15 93.1 -0.2 98 107-254 7-111 (133)
4 2ct2_A Tripartite motif protei 98.7 1.6E-08 5.6E-13 74.1 4.7 61 106-172 14-75 (88)
5 2ect_A Ring finger protein 126 98.6 4.8E-08 1.7E-12 70.0 5.6 53 106-167 14-66 (78)
6 2kiz_A E3 ubiquitin-protein li 98.6 8.8E-08 3E-12 67.0 6.3 51 106-165 13-63 (69)
7 3ng2_A RNF4, snurf, ring finge 98.6 7.5E-09 2.6E-13 72.8 0.8 56 105-169 8-67 (71)
8 2ep4_A Ring finger protein 24; 98.5 1.1E-07 3.9E-12 67.3 6.0 50 106-164 14-63 (74)
9 2ecm_A Ring finger and CHY zin 98.5 9.4E-08 3.2E-12 63.6 5.1 49 107-164 5-54 (55)
10 2djb_A Polycomb group ring fin 98.5 9.4E-08 3.2E-12 67.5 4.5 54 105-169 13-66 (72)
11 1iym_A EL5; ring-H2 finger, ub 98.5 9.1E-08 3.1E-12 63.7 4.1 50 106-164 4-54 (55)
12 2d8t_A Dactylidin, ring finger 98.5 8.2E-08 2.8E-12 67.6 3.8 55 105-171 13-67 (71)
13 2ecv_A Tripartite motif-contai 98.5 1.7E-07 5.9E-12 67.8 5.7 56 106-167 18-73 (85)
14 2ea6_A Ring finger protein 4; 98.5 9.4E-08 3.2E-12 66.5 4.1 51 105-164 13-67 (69)
15 2xeu_A Ring finger protein 4; 98.5 2E-08 6.8E-13 69.0 0.3 55 107-170 3-61 (64)
16 3hcs_A TNF receptor-associated 98.5 2.8E-08 9.6E-13 82.2 1.2 119 106-251 17-146 (170)
17 2ecw_A Tripartite motif-contai 98.5 1.5E-07 5.1E-12 68.2 4.6 57 106-168 18-74 (85)
18 1x4j_A Ring finger protein 38; 98.5 1.2E-07 4E-12 67.5 3.9 51 106-165 22-72 (75)
19 2egp_A Tripartite motif-contai 98.4 2.4E-08 8E-13 71.7 -0.2 59 106-169 11-69 (79)
20 2ecy_A TNF receptor-associated 98.4 1.7E-07 5.8E-12 65.0 4.2 51 106-167 14-64 (66)
21 1g25_A CDK-activating kinase a 98.4 5.1E-08 1.7E-12 67.5 1.4 57 107-171 3-61 (65)
22 1e4u_A Transcriptional repress 98.4 1.6E-07 5.3E-12 67.7 4.0 53 106-166 10-63 (78)
23 2ysl_A Tripartite motif-contai 98.4 9.8E-08 3.4E-12 67.4 2.5 53 105-166 18-70 (73)
24 2l0b_A E3 ubiquitin-protein li 98.4 2.6E-07 9E-12 68.4 4.1 51 106-165 39-89 (91)
25 2ysj_A Tripartite motif-contai 98.4 8.7E-07 3E-11 60.6 6.3 45 105-156 18-62 (63)
26 2csy_A Zinc finger protein 183 98.3 7.2E-07 2.5E-11 64.3 6.0 47 106-164 14-60 (81)
27 3lrq_A E3 ubiquitin-protein li 98.3 3.7E-07 1.2E-11 68.8 3.8 52 106-167 21-72 (100)
28 2yur_A Retinoblastoma-binding 98.3 1.1E-06 3.7E-11 62.4 5.9 49 105-163 13-62 (74)
29 2yu4_A E3 SUMO-protein ligase 98.2 1.5E-06 5.1E-11 64.7 5.7 56 107-165 7-63 (94)
30 1v87_A Deltex protein 2; ring- 98.2 2E-06 6.8E-11 66.1 5.7 54 107-164 25-93 (114)
31 3ztg_A E3 ubiquitin-protein li 98.2 1.3E-06 4.4E-11 64.5 4.4 48 106-163 12-60 (92)
32 1chc_A Equine herpes virus-1 r 98.2 2E-06 6.9E-11 59.6 5.0 47 107-164 5-51 (68)
33 2y43_A E3 ubiquitin-protein li 98.2 9.8E-07 3.3E-11 66.1 3.1 48 107-165 22-69 (99)
34 2ckl_A Polycomb group ring fin 98.1 1.8E-06 6E-11 65.8 4.1 49 106-165 14-62 (108)
35 2ecj_A Tripartite motif-contai 98.1 2.8E-06 9.7E-11 56.8 4.3 43 106-155 14-56 (58)
36 1t1h_A Gspef-atpub14, armadill 98.1 2.1E-06 7.1E-11 61.3 3.6 49 106-165 7-55 (78)
37 3fl2_A E3 ubiquitin-protein li 98.1 2.9E-06 9.8E-11 66.3 4.2 48 107-165 52-99 (124)
38 2ecn_A Ring finger protein 141 98.1 6.8E-07 2.3E-11 62.5 0.5 47 106-165 14-60 (70)
39 4ayc_A E3 ubiquitin-protein li 98.0 2.4E-06 8.1E-11 68.1 3.5 46 107-164 53-98 (138)
40 1jm7_A BRCA1, breast cancer ty 98.0 1.8E-06 6.2E-11 65.9 2.2 52 107-167 21-72 (112)
41 3hct_A TNF receptor-associated 98.0 3.5E-06 1.2E-10 65.3 3.6 49 106-165 17-65 (118)
42 3htk_C E3 SUMO-protein ligase 98.0 1.1E-06 3.9E-11 76.8 0.8 54 106-166 180-233 (267)
43 2ecl_A Ring-box protein 2; RNF 98.0 5.7E-06 1.9E-10 59.7 4.4 51 106-165 14-76 (81)
44 2ckl_B Ubiquitin ligase protei 97.9 5.2E-06 1.8E-10 68.1 4.0 49 106-164 53-101 (165)
45 1rmd_A RAG1; V(D)J recombinati 97.9 3.3E-06 1.1E-10 65.1 2.5 49 107-166 23-71 (116)
46 3knv_A TNF receptor-associated 97.9 7.6E-06 2.6E-10 65.5 4.6 46 106-162 30-75 (141)
47 1z6u_A NP95-like ring finger p 97.9 4E-06 1.4E-10 67.9 2.8 49 107-166 78-126 (150)
48 2kr4_A Ubiquitin conjugation f 97.8 9.4E-06 3.2E-10 59.2 3.4 48 107-166 14-61 (85)
49 1wgm_A Ubiquitin conjugation f 97.8 1.6E-05 5.3E-10 59.7 4.4 48 106-165 21-69 (98)
50 1bor_A Transcription factor PM 97.8 7.9E-06 2.7E-10 54.6 2.4 44 106-164 5-48 (56)
51 3l11_A E3 ubiquitin-protein li 97.8 2.2E-06 7.6E-11 66.0 -0.5 49 106-165 14-62 (115)
52 4ap4_A E3 ubiquitin ligase RNF 97.8 7.2E-06 2.5E-10 64.2 1.7 56 106-170 71-130 (133)
53 1jm7_B BARD1, BRCA1-associated 97.8 6.1E-06 2.1E-10 63.8 1.2 45 107-164 22-66 (117)
54 2d8s_A Cellular modulator of i 97.7 8E-05 2.7E-09 53.6 6.7 52 106-165 14-70 (80)
55 2kre_A Ubiquitin conjugation f 97.7 1.3E-05 4.6E-10 60.2 2.1 48 106-165 28-75 (100)
56 2vje_A E3 ubiquitin-protein li 97.6 2.6E-05 9E-10 53.6 2.5 50 105-164 6-56 (64)
57 2ct7_A Ring finger protein 31; 97.6 4.3E-05 1.5E-09 55.8 3.7 37 216-252 24-61 (86)
58 2c2l_A CHIP, carboxy terminus 97.6 6.9E-05 2.4E-09 65.9 5.3 50 106-166 207-256 (281)
59 3dpl_R Ring-box protein 1; ubi 97.5 8E-05 2.7E-09 56.6 4.6 49 107-164 37-100 (106)
60 4ic3_A E3 ubiquitin-protein li 97.4 7.9E-05 2.7E-09 52.6 2.5 42 107-164 24-66 (74)
61 2vje_B MDM4 protein; proto-onc 97.3 9E-05 3.1E-09 50.7 2.2 48 107-164 7-55 (63)
62 2jmo_A Parkin; IBR, E3 ligase, 97.3 5.2E-05 1.8E-09 54.6 1.0 43 216-259 24-74 (80)
63 2y1n_A E3 ubiquitin-protein li 97.3 0.00022 7.5E-09 66.0 5.2 48 107-165 332-379 (389)
64 2f42_A STIP1 homology and U-bo 97.3 0.00015 5.1E-09 60.2 3.6 50 106-166 105-154 (179)
65 2ecg_A Baculoviral IAP repeat- 97.2 0.0002 6.8E-09 50.6 2.8 43 107-165 25-68 (75)
66 2ea5_A Cell growth regulator w 97.1 0.00094 3.2E-08 46.3 5.4 44 106-165 14-58 (68)
67 4a0k_B E3 ubiquitin-protein li 97.0 0.00012 4.2E-09 56.5 0.5 50 107-165 48-112 (117)
68 2ct7_A Ring finger protein 31; 97.0 0.00041 1.4E-08 50.5 3.3 25 177-201 52-79 (86)
69 2yho_A E3 ubiquitin-protein li 96.8 0.00042 1.4E-08 49.6 1.8 43 107-165 18-61 (79)
70 2cs3_A Protein C14ORF4, MY039 96.5 0.015 5.2E-07 41.0 8.2 70 104-175 12-90 (93)
71 2ct0_A Non-SMC element 1 homol 96.2 0.0031 1.1E-07 44.5 3.2 50 106-164 14-63 (74)
72 2bay_A PRE-mRNA splicing facto 96.0 0.0042 1.4E-07 42.0 3.0 51 107-168 3-53 (61)
73 3t6p_A Baculoviral IAP repeat- 96.0 0.0023 7.8E-08 58.5 2.1 43 106-164 294-337 (345)
74 2jmo_A Parkin; IBR, E3 ligase, 95.8 0.0022 7.5E-08 46.0 0.8 43 151-194 25-75 (80)
75 2jun_A Midline-1; B-BOX, TRIM, 94.8 0.019 6.4E-07 42.5 3.2 33 107-139 3-35 (101)
76 3k1l_B Fancl; UBC, ring, RWD, 94.2 0.033 1.1E-06 50.5 3.9 58 106-165 307-373 (381)
77 1vyx_A ORF K3, K3RING; zinc-bi 94.1 0.079 2.7E-06 35.5 4.8 48 107-164 6-58 (60)
78 3vk6_A E3 ubiquitin-protein li 92.7 0.092 3.2E-06 38.8 3.5 46 109-164 3-48 (101)
79 3lrq_A E3 ubiquitin-protein li 89.1 0.067 2.3E-06 39.5 -0.2 32 218-254 23-55 (100)
80 3j20_Y 30S ribosomal protein S 87.3 0.31 1.1E-05 31.3 2.1 29 216-244 18-47 (50)
81 3hcs_A TNF receptor-associated 86.9 0.34 1.2E-05 39.0 2.7 62 108-184 54-118 (170)
82 2ysj_A Tripartite motif-contai 86.7 0.099 3.4E-06 34.8 -0.6 33 217-254 20-52 (63)
83 1pft_A TFIIB, PFTFIIBN; N-term 85.2 0.67 2.3E-05 29.5 2.9 28 217-244 5-34 (50)
84 2k4x_A 30S ribosomal protein S 85.0 0.25 8.5E-06 32.5 0.7 28 217-244 18-46 (55)
85 2ysl_A Tripartite motif-contai 84.9 0.16 5.5E-06 34.6 -0.2 33 217-254 20-52 (73)
86 1vq8_Z 50S ribosomal protein L 84.3 0.68 2.3E-05 33.1 2.9 31 215-245 25-56 (83)
87 2d8t_A Dactylidin, ring finger 83.1 0.23 7.8E-06 33.9 -0.1 33 217-254 15-47 (71)
88 3nw0_A Non-structural maintena 83.0 0.73 2.5E-05 39.6 3.1 49 107-164 180-228 (238)
89 2ckl_A Polycomb group ring fin 82.7 0.25 8.7E-06 36.6 0.0 33 217-254 15-48 (108)
90 2ct2_A Tripartite motif protei 82.6 0.2 6.8E-06 35.4 -0.6 37 217-254 15-51 (88)
91 2yur_A Retinoblastoma-binding 81.8 0.21 7.1E-06 34.4 -0.7 32 218-254 16-48 (74)
92 2jrp_A Putative cytoplasmic pr 81.7 0.73 2.5E-05 32.7 2.1 35 218-254 3-43 (81)
93 2egp_A Tripartite motif-contai 81.7 0.21 7.1E-06 34.6 -0.7 34 217-255 12-45 (79)
94 2jr6_A UPF0434 protein NMA0874 81.2 0.83 2.8E-05 31.3 2.2 28 217-244 8-36 (68)
95 2ckl_B Ubiquitin ligase protei 81.0 0.32 1.1E-05 39.1 0.0 32 218-254 55-87 (165)
96 2ecy_A TNF receptor-associated 80.8 0.22 7.4E-06 33.4 -0.9 33 217-254 15-47 (66)
97 2csy_A Zinc finger protein 183 80.4 0.33 1.1E-05 33.9 -0.1 33 217-254 15-47 (81)
98 3ng2_A RNF4, snurf, ring finge 80.4 0.23 7.7E-06 33.6 -0.9 39 216-254 9-49 (71)
99 1x4j_A Ring finger protein 38; 80.4 0.44 1.5E-05 32.7 0.6 35 217-254 23-58 (75)
100 3ztg_A E3 ubiquitin-protein li 80.2 0.28 9.6E-06 35.1 -0.5 31 218-253 14-45 (92)
101 4ayc_A E3 ubiquitin-protein li 80.1 0.36 1.2E-05 37.6 0.0 32 218-254 54-85 (138)
102 2y43_A E3 ubiquitin-protein li 79.5 0.34 1.2E-05 35.3 -0.2 32 218-254 23-55 (99)
103 2djb_A Polycomb group ring fin 79.3 0.24 8.1E-06 33.9 -1.1 32 218-254 16-48 (72)
104 1t1h_A Gspef-atpub14, armadill 79.2 0.34 1.1E-05 33.5 -0.3 33 218-255 9-41 (78)
105 3fl2_A E3 ubiquitin-protein li 78.3 0.4 1.4E-05 36.5 -0.2 32 218-254 53-84 (124)
106 1weo_A Cellulose synthase, cat 78.1 5.3 0.00018 28.6 5.6 51 106-164 15-69 (93)
107 2ecw_A Tripartite motif-contai 78.1 0.31 1.1E-05 34.0 -0.8 32 218-254 20-51 (85)
108 3knv_A TNF receptor-associated 77.8 0.42 1.4E-05 37.6 -0.2 32 218-254 32-63 (141)
109 2kiz_A E3 ubiquitin-protein li 77.6 0.62 2.1E-05 31.3 0.7 37 216-254 13-49 (69)
110 2xeu_A Ring finger protein 4; 77.5 0.35 1.2E-05 31.8 -0.7 37 218-254 4-42 (64)
111 2ep4_A Ring finger protein 24; 77.4 0.35 1.2E-05 33.0 -0.7 36 217-254 15-50 (74)
112 1wfh_A Zinc finger (AN1-like) 77.1 0.68 2.3E-05 31.2 0.7 32 216-251 14-45 (64)
113 2ect_A Ring finger protein 126 76.9 0.65 2.2E-05 32.0 0.6 36 217-254 15-50 (78)
114 2d8v_A Zinc finger FYVE domain 76.7 2.3 7.9E-05 28.7 3.2 32 106-141 7-39 (67)
115 2jne_A Hypothetical protein YF 76.6 1.7 5.8E-05 31.7 2.8 39 216-256 31-75 (101)
116 2ecn_A Ring finger protein 141 75.9 0.4 1.4E-05 32.4 -0.7 32 217-254 15-46 (70)
117 1wfl_A Zinc finger protein 216 75.8 0.73 2.5E-05 32.0 0.6 31 217-251 25-55 (74)
118 3hct_A TNF receptor-associated 75.3 0.53 1.8E-05 35.5 -0.2 31 218-253 19-49 (118)
119 2ea6_A Ring finger protein 4; 74.9 0.37 1.3E-05 32.2 -1.1 38 217-254 15-54 (69)
120 2l0b_A E3 ubiquitin-protein li 74.1 0.58 2E-05 33.6 -0.3 36 217-254 40-75 (91)
121 3l11_A E3 ubiquitin-protein li 73.9 0.75 2.6E-05 34.4 0.3 33 218-255 16-48 (115)
122 2ecv_A Tripartite motif-contai 73.6 0.38 1.3E-05 33.5 -1.4 32 217-253 19-50 (85)
123 1rmd_A RAG1; V(D)J recombinati 73.0 0.66 2.2E-05 34.8 -0.2 32 218-254 24-55 (116)
124 1wg2_A Zinc finger (AN1-like) 72.3 0.87 3E-05 30.7 0.3 32 216-251 14-45 (64)
125 1jm7_B BARD1, BRCA1-associated 72.0 0.73 2.5E-05 34.7 -0.2 32 218-254 23-55 (117)
126 2ko5_A Ring finger protein Z; 71.0 4.7 0.00016 29.3 3.9 47 106-165 27-73 (99)
127 1wfp_A Zinc finger (AN1-like) 70.2 1.2 4.2E-05 30.9 0.7 32 216-251 24-55 (74)
128 2js4_A UPF0434 protein BB2007; 69.8 3.4 0.00012 28.3 2.9 30 217-246 8-38 (70)
129 1jm7_A BRCA1, breast cancer ty 69.5 0.49 1.7E-05 35.0 -1.6 32 218-254 22-53 (112)
130 1z6u_A NP95-like ring finger p 69.2 0.91 3.1E-05 36.0 -0.2 33 218-255 79-111 (150)
131 2hf1_A Tetraacyldisaccharide-1 67.5 3.1 0.00011 28.3 2.3 28 217-244 8-36 (68)
132 1wff_A Riken cDNA 2810002D23 p 66.5 1.8 6.2E-05 30.9 0.9 33 216-251 24-56 (85)
133 2pk7_A Uncharacterized protein 65.0 3.7 0.00013 28.1 2.3 27 218-244 9-36 (69)
134 2xzm_9 RPS31E; ribosome, trans 62.8 4.7 0.00016 33.2 2.9 29 217-246 113-143 (189)
135 1z2q_A LM5-1; membrane protein 62.6 11 0.00038 26.5 4.6 36 105-140 19-55 (84)
136 3u5c_f 40S ribosomal protein S 61.6 3 0.0001 33.1 1.5 31 217-247 118-151 (152)
137 2jny_A Uncharacterized BCR; st 60.4 5.1 0.00018 27.2 2.3 29 217-245 10-39 (67)
138 2yw8_A RUN and FYVE domain-con 60.2 6.7 0.00023 27.5 3.0 34 106-139 18-52 (82)
139 2ecl_A Ring-box protein 2; RNF 58.7 1.7 5.9E-05 30.3 -0.4 37 219-255 17-63 (81)
140 3h0g_I DNA-directed RNA polyme 58.3 4.7 0.00016 30.3 2.0 28 217-244 4-36 (113)
141 3qt1_I DNA-directed RNA polyme 58.2 2.9 9.8E-05 32.5 0.8 33 212-244 19-56 (133)
142 1v87_A Deltex protein 2; ring- 57.9 1.7 5.9E-05 32.2 -0.5 36 218-253 26-74 (114)
143 1joc_A EEA1, early endosomal a 57.4 6 0.0002 30.2 2.5 34 107-140 69-103 (125)
144 4a0k_B E3 ubiquitin-protein li 56.9 2.3 7.7E-05 32.3 0.0 25 231-255 75-99 (117)
145 1x4u_A Zinc finger, FYVE domai 56.3 8 0.00028 27.2 2.9 35 105-139 12-47 (84)
146 1twf_I B12.6, DNA-directed RNA 56.2 5.1 0.00017 30.5 1.9 30 216-245 3-37 (122)
147 3t7l_A Zinc finger FYVE domain 53.7 7.9 0.00027 27.7 2.5 35 106-140 19-54 (90)
148 1zbd_B Rabphilin-3A; G protein 50.8 6.7 0.00023 30.4 1.8 32 107-138 55-88 (134)
149 1twf_L ABC10-alpha, DNA-direct 50.4 4.2 0.00014 27.9 0.5 26 216-242 27-53 (70)
150 1z60_A TFIIH basal transcripti 50.1 6.1 0.00021 26.1 1.3 30 108-137 16-45 (59)
151 1wep_A PHF8; structural genomi 49.4 12 0.00041 25.9 2.8 56 105-165 10-66 (79)
152 2kpi_A Uncharacterized protein 49.4 12 0.00042 24.3 2.7 26 217-244 10-38 (56)
153 2o35_A Hypothetical protein DU 48.7 9.6 0.00033 27.8 2.2 17 131-147 42-58 (105)
154 2ffw_A Midline-1; B-BOX, ring 47.0 42 0.0014 23.0 5.4 35 107-141 30-65 (78)
155 1x4w_A Hypothetical protein FL 46.8 1.5 5.1E-05 29.9 -2.2 35 216-251 14-48 (67)
156 3m7n_A Putative uncharacterize 46.7 8.5 0.00029 31.2 1.9 24 218-243 141-165 (179)
157 1k81_A EIF-2-beta, probable tr 46.4 13 0.00044 21.8 2.2 25 219-243 2-30 (36)
158 1wfk_A Zinc finger, FYVE domai 46.0 16 0.00055 25.9 3.1 35 106-140 8-43 (88)
159 3fyb_A Protein of unknown func 45.9 9.5 0.00032 27.8 1.8 17 131-147 41-57 (104)
160 1dl6_A Transcription factor II 45.3 11 0.00038 24.6 2.0 26 217-242 11-38 (58)
161 2apo_B Ribosome biogenesis pro 44.8 17 0.00058 24.0 2.8 37 216-274 5-41 (60)
162 3nyb_B Protein AIR2; polya RNA 44.7 8.6 0.00029 27.2 1.4 18 177-194 6-23 (83)
163 1y02_A CARP2, FYVE-ring finger 44.7 11 0.00038 28.6 2.2 38 104-141 16-54 (120)
164 1gh9_A 8.3 kDa protein (gene M 44.4 15 0.00052 25.1 2.6 25 218-243 5-29 (71)
165 2akl_A PHNA-like protein PA012 44.1 8.6 0.00029 29.6 1.4 27 217-244 27-54 (138)
166 3dpl_R Ring-box protein 1; ubi 42.5 4 0.00014 30.2 -0.6 24 231-254 64-87 (106)
167 3a1b_A DNA (cytosine-5)-methyl 42.0 12 0.0004 29.9 1.9 34 107-143 79-114 (159)
168 1vfy_A Phosphatidylinositol-3- 42.0 16 0.00054 24.9 2.5 32 108-139 12-44 (73)
169 1wem_A Death associated transc 41.6 33 0.0011 23.3 4.1 33 107-140 16-48 (76)
170 2zet_C Melanophilin; complex, 40.5 15 0.00052 29.0 2.4 31 107-137 68-100 (153)
171 2y1n_A E3 ubiquitin-protein li 40.4 6.2 0.00021 36.3 0.1 33 217-254 332-364 (389)
172 1wii_A Hypothetical UPF0222 pr 40.2 15 0.00051 26.1 2.1 28 217-244 23-57 (85)
173 3vk6_A E3 ubiquitin-protein li 39.9 7.7 0.00026 28.5 0.6 35 219-253 3-48 (101)
174 2aus_D NOP10, ribosome biogene 38.5 21 0.00072 23.6 2.5 38 216-275 4-41 (60)
175 2f9y_B Acetyl-coenzyme A carbo 38.1 6.7 0.00023 34.8 -0.0 34 213-246 20-55 (304)
176 2lbm_A Transcriptional regulat 36.7 67 0.0023 24.9 5.6 50 107-161 63-116 (142)
177 2pv0_B DNA (cytosine-5)-methyl 36.6 19 0.00064 33.0 2.7 32 107-141 93-126 (386)
178 3ql9_A Transcriptional regulat 36.4 53 0.0018 25.1 4.9 50 107-161 57-110 (129)
179 3mjh_B Early endosome antigen 34.4 8 0.00027 22.5 -0.1 14 106-119 4-17 (34)
180 3v2d_5 50S ribosomal protein L 33.6 12 0.0004 24.8 0.6 14 215-228 28-41 (60)
181 2c2l_A CHIP, carboxy terminus 30.9 11 0.00037 32.1 0.1 33 217-254 208-240 (281)
182 1qyp_A RNA polymerase II; tran 30.9 34 0.0012 21.9 2.6 10 217-226 15-24 (57)
183 1dvp_A HRS, hepatocyte growth 30.7 23 0.00078 29.5 2.1 34 107-140 161-195 (220)
184 1nui_A DNA primase/helicase; z 30.4 26 0.0009 29.6 2.5 22 218-242 15-41 (255)
185 3v43_A Histone acetyltransfera 30.3 1.6E+02 0.0054 21.4 7.7 78 106-189 4-90 (112)
186 2zjr_Z 50S ribosomal protein L 29.9 18 0.00062 23.8 1.1 14 215-228 28-41 (60)
187 2a20_A Regulating synaptic mem 29.7 16 0.00053 24.1 0.7 37 217-254 9-45 (62)
188 1we9_A PHD finger family prote 28.7 30 0.001 22.5 2.1 34 106-139 5-39 (64)
189 2kwj_A Zinc finger protein DPF 28.5 18 0.00063 26.8 1.0 71 109-189 3-86 (114)
190 3zyq_A Hepatocyte growth facto 28.4 31 0.0011 28.9 2.6 34 107-140 164-198 (226)
191 2k16_A Transcription initiatio 27.3 33 0.0011 23.2 2.1 33 106-138 17-49 (75)
192 2fiy_A Protein FDHE homolog; F 27.1 33 0.0011 30.3 2.6 34 218-251 183-231 (309)
193 3h0g_L DNA-directed RNA polyme 27.0 15 0.00052 24.5 0.3 28 216-244 20-48 (63)
194 1vk6_A NADH pyrophosphatase; 1 26.6 65 0.0022 27.6 4.4 28 216-243 106-134 (269)
195 1f62_A Transcription factor WS 26.1 49 0.0017 20.3 2.7 31 109-139 2-32 (51)
196 3j21_g 50S ribosomal protein L 26.0 20 0.00069 22.8 0.7 24 216-243 13-37 (51)
197 2lri_C Autoimmune regulator; Z 25.6 78 0.0027 20.9 3.7 48 107-162 12-59 (66)
198 2f9i_B Acetyl-coenzyme A carbo 25.4 15 0.00052 32.1 0.1 34 213-246 26-61 (285)
199 3nw0_A Non-structural maintena 24.8 69 0.0024 27.0 4.2 34 177-227 194-227 (238)
200 2k5c_A Uncharacterized protein 24.1 44 0.0015 23.4 2.2 37 150-188 7-63 (95)
201 1x4s_A Protein FON, zinc finge 24.0 56 0.0019 21.4 2.6 34 107-140 11-45 (59)
202 1x6a_A LIMK-2, LIM domain kina 23.2 73 0.0025 21.3 3.3 37 106-142 40-76 (81)
203 2vpb_A Hpygo1, pygopus homolog 23.2 54 0.0019 21.7 2.5 35 106-140 7-43 (65)
204 1x61_A Thyroid receptor intera 22.9 63 0.0021 21.0 2.9 34 107-142 33-66 (72)
205 2ysm_A Myeloid/lymphoid or mix 22.4 42 0.0014 24.5 2.1 73 106-189 6-82 (111)
206 3htk_C E3 SUMO-protein ligase 22.1 19 0.00065 31.2 0.1 33 217-254 181-214 (267)
207 3u50_C Telomerase-associated p 21.6 64 0.0022 25.9 3.1 25 217-242 42-67 (172)
208 2xb1_A Pygopus homolog 2, B-ce 21.5 49 0.0017 24.1 2.2 32 107-138 3-36 (105)
209 2d8x_A Protein pinch; LIM doma 21.2 78 0.0027 20.5 3.1 34 107-142 31-64 (70)
210 1wjv_A Cell growth regulating 21.0 73 0.0025 22.2 2.8 29 217-245 10-48 (79)
211 2csz_A Synaptotagmin-like prot 20.9 49 0.0017 22.9 1.9 31 107-137 25-57 (76)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.58 E-value=1.1e-16 Score=109.96 Aligned_cols=42 Identities=29% Similarity=0.631 Sum_probs=39.0
Q ss_pred CCeeecCCCCeeEEecCCcCeEEe-c--cCcceeeccccCccCCC
Q 048441 215 MKWKRCPNCGYYVEKFRGCNIIIC-R--CGTSFHYYSRADLSELY 256 (292)
Q Consensus 215 ~~~k~CP~C~~~iek~~GCnhm~C-~--C~~~FC~~C~~~~~~~~ 256 (292)
.++|+||+|+++|||++|||||+| + |+++|||+|+++|..+.
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 468999999999999999999999 4 99999999999998754
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=3.3e-14 Score=106.86 Aligned_cols=70 Identities=24% Similarity=0.556 Sum_probs=62.0
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCc-cccCCCCCCCCCC--CCHHHHHhhCCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESI-TTIGCPVTGCQGV--LEPEYCRNILPQQ 175 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~-~~i~CP~~~C~~~--l~~~~i~~~l~~~ 175 (292)
..++|+||++++...+++.+..|||.||++||++|+..+|.++. ..+.||.++|+.. +.++.++.+|+.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~ 76 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAE 76 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHH
Confidence 36899999999887777777789999999999999999998774 5799999999999 9999999998753
No 3
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.94 E-value=8e-11 Score=93.07 Aligned_cols=98 Identities=20% Similarity=0.461 Sum_probs=65.1
Q ss_pred CcccccccccCCCC----CceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHHHhhC-CCCceeccC
Q 048441 107 SFVCEICVESKSPN----ESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCRNIL-PQQVMFCAK 181 (292)
Q Consensus 107 ~~~C~IC~~~~~~~----~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l-~~~~~~C~~ 181 (292)
.++|+||++.+... .....+.|||.||.+||..|+. ....|| .|+..+....+..+. ..+...|..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~-------~~~~CP--~Cr~~~~~~~l~~l~i~~~~~~C~i 77 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK-------NANTCP--TCRKKINHKRYHPIYIGSGTVSCPI 77 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT-------TCSBCT--TTCCBCTTTCEEECBCSSSSCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH-------hCCCCC--CCCCcCccccccccccCCCCCCCCC
Confidence 68999999987432 3334569999999999999997 335899 699888765544332 222244444
Q ss_pred CCCCccCCCCchhHHHhcccchhHHHHHHHHHhCCeeecCCCCeeEEec--CCcCeEEeccCcceeeccccCccC
Q 048441 182 CKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYVEKF--RGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 182 C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~iek~--~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
| ...+... .+=..+...|||.||+.|...|-.
T Consensus 78 C-----------------------------------------~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 78 C-----------------------------------------MDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 111 (133)
T ss_dssp T-----------------------------------------CCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH
T ss_pred C-----------------------------------------CCccccccccCcceEeCCCCChhhHHHHHHHHH
Confidence 4 3333221 111224558999999999999864
No 4
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.6e-08 Score=74.08 Aligned_cols=61 Identities=26% Similarity=0.597 Sum_probs=46.6
Q ss_pred CCcccccccccCCCCCc-eeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHHHhhC
Q 048441 106 PSFVCEICVESKSPNES-FRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCRNIL 172 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~-~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l 172 (292)
+.+.|+||++.+...+. ..++.|||.||..|+..|+... .....|| .|+..+...++..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP--~Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----INGVRCP--FCSKITRITSLTQLT 75 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----SSCBCCT--TTCCCBCCSSTTTSE
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----CCCcCCC--CCCCcccchhHHHHH
Confidence 46899999998875442 4456899999999999999853 2358999 699888766555443
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.61 E-value=4.8e-08 Score=70.02 Aligned_cols=53 Identities=26% Similarity=0.637 Sum_probs=43.0
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEY 167 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~ 167 (292)
....|+||++.+.....+..+.|+|.||..|+..|+.. ...|| .|+..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~ 66 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-------HDSCP--VCRKSLTGQN 66 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-------TCSCT--TTCCCCCCSC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-------CCcCc--CcCCccCCcc
Confidence 46899999999876666666789999999999999862 36899 6998877543
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.59 E-value=8.8e-08 Score=66.96 Aligned_cols=51 Identities=24% Similarity=0.535 Sum_probs=40.6
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
....|+||++.+.....+..+.|||.||..|+..|+.. ...|| .|+..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-------NKKCP--ICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-------CSBCT--TTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-------CCCCc--CcCccccC
Confidence 36899999998866555566799999999999999975 24699 68877653
No 7
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.59 E-value=7.5e-09 Score=72.79 Aligned_cols=56 Identities=20% Similarity=0.603 Sum_probs=43.0
Q ss_pred CCCcccccccccCCC----CCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHHH
Q 048441 105 DPSFVCEICVESKSP----NESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCR 169 (292)
Q Consensus 105 ~~~~~C~IC~~~~~~----~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 169 (292)
.+...|+||++.+.. ......+.|||.||..|+..|+.. ...|| .|+..+...+++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-------CSBCT--TTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-------CCCCC--CCCCccChhhee
Confidence 347999999998643 233456799999999999999974 35899 799888765544
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=1.1e-07 Score=67.31 Aligned_cols=50 Identities=26% Similarity=0.666 Sum_probs=40.9
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
....|+||++.+.....+..+.|+|.||..|+..|+.. ...|| .|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-------~~~CP--~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-------RKVCP--LCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-------CSBCT--TTCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-------CCcCC--CcCcccc
Confidence 36899999999876666666689999999999999974 24899 6887664
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.54 E-value=9.4e-08 Score=63.59 Aligned_cols=49 Identities=24% Similarity=0.497 Sum_probs=39.2
Q ss_pred CcccccccccCCC-CCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 107 SFVCEICVESKSP-NESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 107 ~~~C~IC~~~~~~-~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
...|+||++.+.. ...+.++.|+|.||..|+..|+... ..|| .|+..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-------~~CP--~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-------YRCP--LCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-------CCCT--TSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-------CcCC--CCCCcCC
Confidence 6899999998743 3345567999999999999999852 7899 6887654
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=9.4e-08 Score=67.52 Aligned_cols=54 Identities=26% Similarity=0.615 Sum_probs=41.9
Q ss_pred CCCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHHH
Q 048441 105 DPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCR 169 (292)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 169 (292)
.+.+.|+||++.+.. .+.+..|||.||..|+..|+.. ...|| .|+..+...++.
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITECLHTFCKSCIVRHFYY-------SNRCP--KCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHH-------CSSCT--TTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHc-------CCcCC--CcCcccCccccc
Confidence 347999999997653 3444589999999999999974 47899 799888765433
No 11
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.50 E-value=9.1e-08 Score=63.72 Aligned_cols=50 Identities=20% Similarity=0.600 Sum_probs=38.7
Q ss_pred CCcccccccccCCCCCceeecC-CCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKG-CSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~-CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
+...|+||++.+...+....+. |||.||..|+..|+. ....|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-------~~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-------SHSTCP--LCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-------TCCSCS--SSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH-------cCCcCc--CCCCEeE
Confidence 3689999999987655444444 999999999999985 245799 6887653
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=8.2e-08 Score=67.63 Aligned_cols=55 Identities=16% Similarity=0.372 Sum_probs=43.0
Q ss_pred CCCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHHHhh
Q 048441 105 DPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCRNI 171 (292)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 171 (292)
...+.|+||++.+.. .+. +.|||.||..|+..|+. ....|| .|+..+....+...
T Consensus 13 ~~~~~C~IC~~~~~~--~~~-~~CgH~fC~~Ci~~~~~-------~~~~CP--~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 13 LTVPECAICLQTCVH--PVS-LPCKHVFCYLCVKGASW-------LGKRCA--LCRQEIPEDFLDSG 67 (71)
T ss_dssp SSCCBCSSSSSBCSS--EEE-ETTTEEEEHHHHHHCTT-------CSSBCS--SSCCBCCHHHHSCS
T ss_pred CCCCCCccCCcccCC--CEE-ccCCCHHHHHHHHHHHH-------CCCcCc--CcCchhCHhhccCC
Confidence 457899999997643 333 48999999999999986 337899 79999998776543
No 13
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.7e-07 Score=67.82 Aligned_cols=56 Identities=25% Similarity=0.646 Sum_probs=43.9
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEY 167 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~ 167 (292)
+.+.|+||++.+... . .+.|||.||..|+..|+......+ ....|| .|+..+..++
T Consensus 18 ~~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~~~~~~~-~~~~CP--~Cr~~~~~~~ 73 (85)
T 2ecv_A 18 EEVTCPICLELLTQP--L-SLDCGHSFCQACLTANHKKSMLDK-GESSCP--VCRISYQPEN 73 (85)
T ss_dssp CCCCCTTTCSCCSSC--B-CCSSSCCBCTTHHHHHHHHHHHTT-SCCCCT--TTCCSSCSSS
T ss_pred CCCCCCCCCcccCCc--e-eCCCCCHHHHHHHHHHHHHhhcCC-CCCcCC--CCCCccCHHh
Confidence 469999999987543 2 248999999999999999866444 468999 6998887643
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=9.4e-08 Score=66.53 Aligned_cols=51 Identities=22% Similarity=0.651 Sum_probs=39.5
Q ss_pred CCCcccccccccCCCC----CceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 105 DPSFVCEICVESKSPN----ESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 105 ~~~~~C~IC~~~~~~~----~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
.....|+||++.+... ..+.++.|||.||..|+..|+.. ...|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-------CSSCT--TTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-------CCCCC--CCCCccC
Confidence 3479999999987532 33355799999999999999974 45899 6887765
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.47 E-value=2e-08 Score=68.99 Aligned_cols=55 Identities=20% Similarity=0.578 Sum_probs=42.4
Q ss_pred CcccccccccCCCC----CceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHHHh
Q 048441 107 SFVCEICVESKSPN----ESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCRN 170 (292)
Q Consensus 107 ~~~C~IC~~~~~~~----~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 170 (292)
.+.|+||++.+... ..+.++.|||.||..|+..|+.. ...|| .|+..+..+++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKINHKRYHP 61 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-------CSBCT--TTCCBCTTTCEEE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-------CCCCC--CCCccCCccceee
Confidence 58999999987532 33345699999999999999984 35899 6998887655443
No 16
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.47 E-value=2.8e-08 Score=82.20 Aligned_cols=119 Identities=22% Similarity=0.419 Sum_probs=71.7
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHH------HHhhCCCCceec
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEY------CRNILPQQVMFC 179 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~------i~~~l~~~~~~C 179 (292)
+.+.|+||++.+.. .+. +.|||.||..||..|+... ...|| .|+..+.... +++.+..-.+.|
T Consensus 17 ~~~~C~IC~~~~~~--pv~-~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~~~~~~~~~~~i~~l~v~C 85 (170)
T 3hcs_A 17 SKYECPICLMALRE--AVQ-TPCGHRFCKACIIKSIRDA------GHKCP--VDNEILLENQLFPDNFAKREILSLMVKC 85 (170)
T ss_dssp GGGBCTTTCSBCSS--EEE-CTTSCEEEHHHHHHHHHHH------CSBCT--TTCCBCCGGGCEECHHHHHHHHTSEEEC
T ss_pred CCCCCCCCChhhcC--cEE-CCCCCHHHHHHHHHHHHhC------CCCCC--CCccCcchhhhhhhHHHHHHHhhcccCC
Confidence 47999999997653 333 5899999999999999863 24899 6988877642 334444334777
Q ss_pred c--CCCCCccCCCCchhHHHhcccchhHHHHHHHHH-hCCeeecCCCCeeEEecCCcCeE--EeccCcceeeccccC
Q 048441 180 A--KCKVPWHTDMKCEDFQNLNENENDDIKLKKLAV-EMKWKRCPNCGYYVEKFRGCNII--ICRCGTSFHYYSRAD 251 (292)
Q Consensus 180 ~--~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~~-~~~~k~CP~C~~~iek~~GCnhm--~C~C~~~FC~~C~~~ 251 (292)
. .|+...-. .++. +. +.. ......||.|+..+.+..--.|+ .|.-....|-.|+..
T Consensus 86 ~n~GC~~~~~~----~~l~--------~H----~~~C~~~~v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~ 146 (170)
T 3hcs_A 86 PNEGCLHKMEL----RHLE--------DH----QAHCEFALMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAAS 146 (170)
T ss_dssp CSTTCCCEEEG----GGHH--------HH----HTTCTTSEEECTTTCCEEEGGGHHHHHHHTCTTCEEECTTTCCE
T ss_pred CCCCCCceecH----hHHH--------HH----HhcCCceeeECCCCChHHHHHHHHHHhhhhCCCCCeECCCCCCc
Confidence 4 34321100 0000 00 000 12346899999999888655554 343334444445443
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.45 E-value=1.5e-07 Score=68.19 Aligned_cols=57 Identities=25% Similarity=0.465 Sum_probs=43.2
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYC 168 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i 168 (292)
..+.|+||++.+... . ++.|||.||..|+..|+.....+ .....|| .|+..+..+++
T Consensus 18 ~~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~~~~~~-~~~~~CP--~Cr~~~~~~~~ 74 (85)
T 2ecw_A 18 EEVTCPICLELLKEP--V-SADCNHSFCRACITLNYESNRNT-DGKGNCP--VCRVPYPFGNL 74 (85)
T ss_dssp TTTSCTTTCSCCSSC--E-ECTTSCCBCHHHHHHHHHHSBCT-TSCBCCT--TTCCCCCTTCC
T ss_pred cCCCCcCCChhhCcc--e-eCCCCCHHHHHHHHHHHHhccCC-CCCCCCC--CCCCcCCHHhC
Confidence 478999999976543 2 35899999999999999864321 2468999 79988876543
No 18
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.45 E-value=1.2e-07 Score=67.51 Aligned_cols=51 Identities=22% Similarity=0.634 Sum_probs=41.5
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
....|+||++.+.....+..+.|+|.||..|+..|+.. ...|| .|+..+.+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-------~~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-------NRTCP--ICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-------CSSCT--TTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-------CCcCc--CcCCcCCC
Confidence 36899999999877666666789999999999999974 25899 68877654
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.43 E-value=2.4e-08 Score=71.72 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=44.0
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCR 169 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~ 169 (292)
+.+.|+||++.+.... .+.|||.||..|+..|+............|| .|+..+...++.
T Consensus 11 ~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP--~Cr~~~~~~~l~ 69 (79)
T 2egp_A 11 EEVTCPICLELLTEPL---SLDCGHSLCRACITVSNKEAVTSMGGKSSCP--VCGISYSFEHLQ 69 (79)
T ss_dssp CCCEETTTTEECSSCC---CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCS--SSCCCCCSSGGG
T ss_pred cCCCCcCCCcccCCee---ECCCCCHHHHHHHHHHHHhcccCCCCCCcCC--CCCCcCCHhhCC
Confidence 4699999999875432 2489999999999999875333333478999 699888765443
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.7e-07 Score=64.97 Aligned_cols=51 Identities=22% Similarity=0.634 Sum_probs=40.1
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEY 167 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~ 167 (292)
+.+.|+||++.+..... +.|||.||..|+..|+.. ....|| .|+..+..++
T Consensus 14 ~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQ---TECGHRFCESCMAALLSS------SSPKCT--ACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCCEESSCCC---CSSSCCCCHHHHHHHHTT------SSCCCT--TTCCCCCTTT
T ss_pred cCCCCCCCChHhcCeeE---CCCCCHHHHHHHHHHHHh------CcCCCC--CCCcCCChhh
Confidence 46999999998754332 489999999999999961 457899 6998877643
No 21
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.43 E-value=5.1e-08 Score=67.45 Aligned_cols=57 Identities=19% Similarity=0.420 Sum_probs=42.0
Q ss_pred Ccccccccc-cCCCCCc-eeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHHHhh
Q 048441 107 SFVCEICVE-SKSPNES-FRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCRNI 171 (292)
Q Consensus 107 ~~~C~IC~~-~~~~~~~-~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~ 171 (292)
.+.|+||++ .+..... +.++.|||.||..|+..|+.. ....|| .|+..+..++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR------GAGNCP--ECGTPLRKSNFRVQ 61 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT------TSSSCT--TTCCCCSSCCCEEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc------CCCcCC--CCCCccccccceee
Confidence 588999999 4443322 234589999999999999863 357899 69998877655443
No 22
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.42 E-value=1.6e-07 Score=67.73 Aligned_cols=53 Identities=17% Similarity=0.414 Sum_probs=39.5
Q ss_pred CCcccccccccCCCCCceee-cCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHH
Q 048441 106 PSFVCEICVESKSPNESFRI-KGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPE 166 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~-~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 166 (292)
+.++|+||++.+...+.... +.|||.||..||..++.. ....|| .|+..+...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~------~~~~CP--~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD------ENGLCP--ACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS------SCSBCT--TTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc------CCCCCC--CCCCccCCC
Confidence 46899999998764433221 359999999999988742 357899 799887654
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=9.8e-08 Score=67.37 Aligned_cols=53 Identities=23% Similarity=0.647 Sum_probs=40.2
Q ss_pred CCCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHH
Q 048441 105 DPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPE 166 (292)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 166 (292)
.+.+.|+||++.+. +.+ .+.|||.||..|+..|+. .......|| .|+..+..+
T Consensus 18 ~~~~~C~IC~~~~~--~~~-~~~CgH~fC~~Ci~~~~~----~~~~~~~CP--~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQ--KPV-TIDCGHNFCLKCITQIGE----TSCGFFKCP--LCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCS--SEE-ECTTCCEEEHHHHHHHCS----SSCSCCCCS--SSCCCCCCC
T ss_pred ccCCEeccCCcccC--CeE-EcCCCChhhHHHHHHHHH----cCCCCCCCC--CCCCcCCcc
Confidence 34689999999765 333 348999999999999986 122567999 698877654
No 24
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.36 E-value=2.6e-07 Score=68.38 Aligned_cols=51 Identities=20% Similarity=0.566 Sum_probs=41.1
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
....|+||++.+........+.|||.||..|+..|+.. ...|| .|+..+.+
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-------~~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-------SGTCP--VCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-------TCBCT--TTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-------CCcCc--CcCccCCC
Confidence 36899999999876665666689999999999999862 34899 68877654
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=8.7e-07 Score=60.65 Aligned_cols=45 Identities=24% Similarity=0.710 Sum_probs=34.3
Q ss_pred CCCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCC
Q 048441 105 DPSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPV 156 (292)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~ 156 (292)
.+.+.|+||++.+.. .+. +.|||.||..|+..|+.. ......||.
T Consensus 18 ~~~~~C~IC~~~~~~--p~~-~~CgH~fC~~Ci~~~~~~----~~~~~~CP~ 62 (63)
T 2ysj_A 18 QEEVICPICLDILQK--PVT-IDCGHNFCLKCITQIGET----SCGFFKCPL 62 (63)
T ss_dssp CCCCBCTTTCSBCSS--CEE-CTTSSEECHHHHHHHHHH----CSSCCCCSC
T ss_pred ccCCCCCcCCchhCC--eEE-eCCCCcchHHHHHHHHHc----CCCCCcCcC
Confidence 346999999997753 333 489999999999999984 124578883
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=7.2e-07 Score=64.33 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=37.5
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
..+.|+||++.+.. .+ ++.|||.||..|+..|+.. ...|| .|+..+.
T Consensus 14 ~~~~C~IC~~~~~~--p~-~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN--PV-VTKCRHYFCESCALEHFRA-------TPRCY--ICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS--EE-ECTTSCEEEHHHHHHHHHH-------CSBCS--SSCCBCC
T ss_pred CCCCCcCCCchhcC--ee-EccCCCHhHHHHHHHHHHC-------CCcCC--CcCcccc
Confidence 46899999997743 33 4689999999999999973 46899 6887764
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.31 E-value=3.7e-07 Score=68.83 Aligned_cols=52 Identities=27% Similarity=0.634 Sum_probs=41.2
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEY 167 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~ 167 (292)
+.+.|+||++.+. +.+.++.|||.||..||..|+... ...|| .|+..+..+.
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~------~~~CP--~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQ------RAQCP--HCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHT------CSBCT--TTCCBCCGGG
T ss_pred CCCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHC------cCCCC--CCCCcCCHHH
Confidence 3689999999775 344436999999999999999852 27899 7998887643
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.30 E-value=1.1e-06 Score=62.36 Aligned_cols=49 Identities=24% Similarity=0.614 Sum_probs=37.8
Q ss_pred CCCcccccccccCCCCCceeecC-CCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCC
Q 048441 105 DPSFVCEICVESKSPNESFRIKG-CSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVL 163 (292)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~~~-CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l 163 (292)
...+.|+||++.+.. .+. +. |||.||..|+..|+... ....|| .|+..+
T Consensus 13 ~~~~~C~IC~~~~~~--p~~-~~~CgH~fC~~Ci~~~~~~~-----~~~~CP--~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIMTD--AVV-IPCCGNSYCDECIRTALLES-----DEHTCP--TCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCCTT--CEE-CSSSCCEECTTHHHHHHHHS-----SSSCCS--SSCCSS
T ss_pred CCCCCCcCCChHHhC--CeE-cCCCCCHHHHHHHHHHHHhc-----CCCcCC--CCCCcC
Confidence 347999999997753 333 46 99999999999999852 247899 688754
No 29
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.24 E-value=1.5e-06 Score=64.73 Aligned_cols=56 Identities=27% Similarity=0.599 Sum_probs=42.2
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCC-CCH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGV-LEP 165 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~-l~~ 165 (292)
.+.|+||++.+. +.+.+..|||.||+.||..|+...-. ......||..+|... +..
T Consensus 7 ~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~~~-~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 7 GFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQK-RKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp CCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHHHT-TTCCBCCCSTTCCCCCBCG
T ss_pred EeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHccC-cCCCCCCCcCcCcccccCH
Confidence 699999998664 44444359999999999999986421 124579998889876 654
No 30
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.19 E-value=2e-06 Score=66.06 Aligned_cols=54 Identities=22% Similarity=0.523 Sum_probs=39.7
Q ss_pred CcccccccccCCCCC---------------ceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNE---------------SFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~---------------~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
...|+||++.+.... ...++.|+|.||..||..|+...- ......|| .|+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~--~~~~~~CP--~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN--KDGSLQCP--SCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC--CSSCCBCT--TTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc--CCCCCcCC--CCCCccC
Confidence 469999999985432 333678999999999999995321 12457899 6887765
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.18 E-value=1.3e-06 Score=64.47 Aligned_cols=48 Identities=25% Similarity=0.632 Sum_probs=37.3
Q ss_pred CCcccccccccCCCCCceeecC-CCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKG-CSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVL 163 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~-CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l 163 (292)
+.+.|+||++.+.. .+. +. |||.||..||..|+... ....|| .|+..+
T Consensus 12 ~~~~C~IC~~~~~~--p~~-~~~CgH~fC~~Ci~~~~~~~-----~~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTD--AVV-IPCCGNSYCDECIRTALLES-----DEHTCP--TCHQND 60 (92)
T ss_dssp TTTEETTTTEECSS--CEE-CTTTCCEECHHHHHHHHHHC-----TTCCCT--TTCCSS
T ss_pred cCCCCCCCChhhcC--ceE-CCCCCCHHHHHHHHHHHHhc-----CCCcCc--CCCCcC
Confidence 47999999997753 333 46 99999999999999742 347899 688765
No 32
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.18 E-value=2e-06 Score=59.65 Aligned_cols=47 Identities=30% Similarity=0.673 Sum_probs=37.2
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
...|+||++.+.. ....+.|||.||..|+..|+.. ...|| .|+..+.
T Consensus 5 ~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ-------NPTCP--LCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH-------SCSTT--TTCCCCC
T ss_pred CCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhC-------cCcCc--CCChhhH
Confidence 5799999997653 2345689999999999999963 35899 6887765
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.15 E-value=9.8e-07 Score=66.15 Aligned_cols=48 Identities=33% Similarity=0.742 Sum_probs=38.5
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
.+.|+||++.+.. .+.+..|||.||..|+..|+. ....|| .|+..+..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~-------~~~~CP--~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLS-------YKTQCP--TCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHT-------TCCBCT--TTCCBCCG
T ss_pred CCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHH-------CCCCCC--CCCCcCCh
Confidence 5899999997753 333348999999999999997 246899 79988775
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.12 E-value=1.8e-06 Score=65.82 Aligned_cols=49 Identities=29% Similarity=0.763 Sum_probs=38.8
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
+.+.|+||++.+. +.+.+..|||.||..|+..|+.. ...|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~-------~~~CP--~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLET-------SKYCP--ICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTS-------CSBCT--TTCCBSCS
T ss_pred CcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHh-------CCcCc--CCCccccc
Confidence 3689999999765 34444599999999999999973 37899 69877664
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=2.8e-06 Score=56.82 Aligned_cols=43 Identities=26% Similarity=0.690 Sum_probs=32.8
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCP 155 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP 155 (292)
+.+.|+||++.+.... .+.|||.||..|+..|+.. ......||
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~----~~~~~~CP 56 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPV---IIECGHNFCKACITRWWED----LERDFPCP 56 (58)
T ss_dssp CCCBCSSSCCBCSSCC---CCSSCCCCCHHHHHHHTTS----SCCSCCCS
T ss_pred cCCCCccCCcccCccE---eCCCCCccCHHHHHHHHHh----cCCCCCCC
Confidence 3689999999876432 2489999999999999752 11457888
No 36
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.09 E-value=2.1e-06 Score=61.33 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=38.2
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
+.+.|+||++.+.. .+. +.|||.||+.|+..|+.. ....|| .|+..+..
T Consensus 7 ~~~~C~IC~~~~~~--Pv~-~~CgH~fc~~Ci~~~~~~------~~~~CP--~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKD--PVI-VSTGQTYERSSIQKWLDA------GHKTCP--KSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSS--EEE-ETTTEEEEHHHHHHHHTT------TCCBCT--TTCCBCSS
T ss_pred ccCCCCCccccccC--CEE-cCCCCeecHHHHHHHHHH------CcCCCC--CCcCCCCh
Confidence 36999999997643 333 489999999999999962 357899 68877664
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.06 E-value=2.9e-06 Score=66.28 Aligned_cols=48 Identities=27% Similarity=0.661 Sum_probs=37.7
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
.+.|+||++.+. +.+. +.|||.||..|+..|+.. ....|| .|+..+..
T Consensus 52 ~~~C~IC~~~~~--~p~~-~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF--RPIT-TVCQHNVCKDCLDRSFRA------QVFSCP--ACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS--SEEE-CTTSCEEEHHHHHHHHHT------TCCBCT--TTCCBCCT
T ss_pred CCCCCcCChHHc--CcEE-eeCCCcccHHHHHHHHhH------CcCCCC--CCCccCCC
Confidence 589999999775 3333 489999999999999972 446899 68877654
No 38
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=6.8e-07 Score=62.50 Aligned_cols=47 Identities=30% Similarity=0.706 Sum_probs=36.8
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
....|+||++.+.. .++.|||.||..|+..|+. ....|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~-------~~~~CP--~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSD-------RHRNCP--ICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSC-------CCSSCH--HHHHCTTC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHH-------CcCcCC--CcCCcccC
Confidence 36899999998754 3458999999999999986 457898 57766553
No 39
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.04 E-value=2.4e-06 Score=68.13 Aligned_cols=46 Identities=33% Similarity=0.790 Sum_probs=36.3
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
.+.|+||++.+. +.+ +++|||.||..|+..|+. ....|| .|+..+.
T Consensus 53 ~~~C~iC~~~~~--~~~-~~~CgH~fc~~Ci~~~~~-------~~~~CP--~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFI--EAV-TLNCAHSFCSYCINEWMK-------RKIECP--ICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCS--SEE-EETTSCEEEHHHHHHHTT-------TCSBCT--TTCCBCC
T ss_pred cCCCcccCcccC--Cce-ECCCCCCccHHHHHHHHH-------cCCcCC--CCCCcCC
Confidence 468999999764 333 358999999999999986 346799 6987765
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.01 E-value=1.8e-06 Score=65.93 Aligned_cols=52 Identities=25% Similarity=0.598 Sum_probs=39.7
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEY 167 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~ 167 (292)
.+.|+||++.+.... .+.|||.||..|+..|+... .....|| .|+..+....
T Consensus 21 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~----~~~~~CP--~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEPV---STKCDHIFCKFCMLKLLNQK----KGPSQCP--LCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSCC---BCTTSCCCCSHHHHHHHHSS----SSSCCCT--TTSCCCCTTT
T ss_pred CCCCcccChhhcCeE---ECCCCCHHHHHHHHHHHHhC----CCCCCCc--CCCCcCCHhh
Confidence 579999999775432 24899999999999999742 2347899 6998877643
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.99 E-value=3.5e-06 Score=65.29 Aligned_cols=49 Identities=27% Similarity=0.673 Sum_probs=38.5
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
+.+.|+||++.+.. .+. +.|||.||..|+..|+... ...|| .|+..+..
T Consensus 17 ~~~~C~IC~~~~~~--p~~-~~CgH~fC~~Ci~~~~~~~------~~~CP--~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALRE--AVQ-TPCGHRFCKACIIKSIRDA------GHKCP--VDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSS--EEE-CTTSCEEEHHHHHHHHHHH------CSBCT--TTCCBCCG
T ss_pred CCCCCCcCChhhcC--eEE-CCcCChhhHHHHHHHHhhC------CCCCC--CCCCCcCH
Confidence 46999999987653 233 4899999999999999863 23899 68877765
No 42
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.99 E-value=1.1e-06 Score=76.83 Aligned_cols=54 Identities=24% Similarity=0.505 Sum_probs=42.6
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPE 166 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 166 (292)
..+.||||++.+. +.++...|||.||+.||..|+.. + ....||..+|+..+...
T Consensus 180 ~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~----~-~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQG----Y-TTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTT----C-SCEECSGGGCSCEECGG
T ss_pred eeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHh----C-CCCCCCcccccCcCchh
Confidence 3799999999764 44444589999999999999973 1 34789988899887754
No 43
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=5.7e-06 Score=59.73 Aligned_cols=51 Identities=24% Similarity=0.445 Sum_probs=37.7
Q ss_pred CCcccccccccCCC-----------CC-ceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSP-----------NE-SFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~-----------~~-~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
+..+|+||++++.. .+ ...+..|+|.|+..||..|+.. .-.|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-------~~~CP--~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-------NNRCP--LCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-------CCBCT--TTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-------CCCCC--CcCCCcch
Confidence 35778888887743 22 3445579999999999999973 34899 69877654
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.95 E-value=5.2e-06 Score=68.06 Aligned_cols=49 Identities=33% Similarity=0.818 Sum_probs=39.2
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
..+.|+||++.+.. .+.++.|||.||..|+..|+.. ....|| .|+..+.
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKECLHRFCADCIITALRS------GNKECP--TCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHT------TCCBCT--TTCCBCC
T ss_pred CCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHh------CcCCCC--CCCCcCC
Confidence 36899999997753 4444589999999999999973 357899 6998874
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.94 E-value=3.3e-06 Score=65.11 Aligned_cols=49 Identities=27% Similarity=0.664 Sum_probs=38.9
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPE 166 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 166 (292)
.+.|+||++.+.. .+. +.|||.||..|+..|+.. ....|| .|+..+...
T Consensus 23 ~~~C~IC~~~~~~--p~~-~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD--PVE-TSCKHLFCRICILRCLKV------MGSYCP--SCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS--EEE-CTTSCEEEHHHHHHHHHH------TCSBCT--TTCCBCCGG
T ss_pred CCCCCCCCcHhcC--cEE-cCCCCcccHHHHHHHHhH------CcCcCC--CCCCCCCHh
Confidence 6899999997643 333 589999999999999985 246899 699887764
No 46
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.93 E-value=7.6e-06 Score=65.52 Aligned_cols=46 Identities=24% Similarity=0.718 Sum_probs=34.6
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGV 162 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~ 162 (292)
+.+.|+||++.+... +. +.|||.||..||..|+.. ....|| .|+..
T Consensus 30 ~~~~C~IC~~~~~~p--v~-~~CgH~FC~~Ci~~~~~~------~~~~CP--~Cr~~ 75 (141)
T 3knv_A 30 AKYLCSACRNVLRRP--FQ-AQCGHRYCSFCLASILSS------GPQNCA--ACVHE 75 (141)
T ss_dssp GGGBCTTTCSBCSSE--EE-CTTSCEEEHHHHHHHGGG------SCEECH--HHHHT
T ss_pred cCcCCCCCChhhcCc--EE-CCCCCccCHHHHHHHHhc------CCCCCC--CCCCc
Confidence 479999999976533 33 589999999999999862 335787 46553
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.92 E-value=4e-06 Score=67.91 Aligned_cols=49 Identities=29% Similarity=0.714 Sum_probs=38.4
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPE 166 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 166 (292)
.+.|+||++.+.. .+. +.|||.||..|+..|+.. ....|| .|+..+...
T Consensus 78 ~~~C~IC~~~~~~--pv~-~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ--PVT-TECFHNVCKDCLQRSFKA------QVFSCP--ACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS--EEE-CTTSCEEEHHHHHHHHHT------TCCBCT--TTCCBCCTT
T ss_pred CCEeecCChhhcC--CEE-cCCCCchhHHHHHHHHHh------CCCcCC--CCCccCCCC
Confidence 5899999997643 333 599999999999999973 346899 688777653
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.84 E-value=9.4e-06 Score=59.18 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=38.0
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPE 166 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 166 (292)
.+.|+||++-+. +.+. +.|||.||+.||..|+.. ...|| .|+..+...
T Consensus 14 ~~~CpI~~~~m~--dPV~-~~cGhtf~r~~I~~~l~~-------~~~cP--~~~~~l~~~ 61 (85)
T 2kr4_A 14 EFRDPLMDTLMT--DPVR-LPSGTVMDRSIILRHLLN-------SPTDP--FNRQMLTES 61 (85)
T ss_dssp TTBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHHHH-------CSBCT--TTCCBCCGG
T ss_pred heECcccCchhc--CCeE-CCCCCEECHHHHHHHHhc-------CCCCC--CCcCCCChH
Confidence 699999998654 4343 479999999999999984 35899 688877653
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.82 E-value=1.6e-05 Score=59.66 Aligned_cols=48 Identities=15% Similarity=0.006 Sum_probs=37.5
Q ss_pred CCcccccccccCCCCCceeecCCC-CccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCS-HSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~Cg-H~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
+.+.|+||++-+. +.+. +.|| |.||+.||..|+.. ...|| .|+..+..
T Consensus 21 ~~~~CpI~~~~m~--dPV~-~~cG~htf~r~cI~~~l~~-------~~~cP--~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMC--DPVV-LPSSRVTVDRSTIARHLLS-------DQTDP--FNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS--SEEE-CTTTCCEEEHHHHHHHTTT-------SCBCT--TTCSBCCT
T ss_pred HhcCCcCcccccc--CCeE-CCCCCeEECHHHHHHHHHh-------CCCCC--CCCCCCCh
Confidence 3699999998654 3343 4899 99999999999973 35799 68877764
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.81 E-value=7.9e-06 Score=54.65 Aligned_cols=44 Identities=23% Similarity=0.636 Sum_probs=34.3
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
+.+.|+||++.+.... ++.|||.||..|+.. ....|| .|+..+.
T Consensus 5 ~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~----------~~~~CP--~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPK---LLPCLHTLCSGCLEA----------SGMQCP--ICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBCCS---CSTTSCCSBTTTCSS----------SSSSCS--SCCSSSS
T ss_pred cCCCceEeCCccCCeE---EcCCCCcccHHHHcc----------CCCCCC--cCCcEee
Confidence 3689999999876432 358999999999876 357899 6887664
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.81 E-value=2.2e-06 Score=65.99 Aligned_cols=49 Identities=24% Similarity=0.634 Sum_probs=38.9
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
+.+.|+||++.+.. .+. +.|||.||..|+..|+.. ....|| .|+..+..
T Consensus 14 ~~~~C~iC~~~~~~--p~~-~~CgH~fC~~Ci~~~~~~------~~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE--PVT-LPCNHTLCKPCFQSTVEK------ASLCCP--FCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS--CEE-CTTSCEECHHHHCCCCCT------TTSBCT--TTCCBCHH
T ss_pred CCCCCccCCcccCc--eeE-cCCCCHHhHHHHHHHHhH------CcCCCC--CCCcccCc
Confidence 46999999987653 333 489999999999999852 347899 79988875
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.76 E-value=7.2e-06 Score=64.16 Aligned_cols=56 Identities=20% Similarity=0.595 Sum_probs=43.2
Q ss_pred CCcccccccccCCC----CCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHHHh
Q 048441 106 PSFVCEICVESKSP----NESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCRN 170 (292)
Q Consensus 106 ~~~~C~IC~~~~~~----~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~ 170 (292)
....|+||++.+.. ......+.|||.||..|+..|+.. ...|| .|+..+..+++..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-------~~~CP--~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-------ANTCP--TCRKKINHKRYHP 130 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-------CSBCT--TTCCBCCGGGEEE
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-------CCCCC--CCCCcCChhccee
Confidence 36899999997743 122345689999999999999974 35899 7999988776544
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.75 E-value=6.1e-06 Score=63.78 Aligned_cols=45 Identities=24% Similarity=0.712 Sum_probs=35.5
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
.+.|+||++.+... +.+..|||.||..|+..|+. ..|| .|+..+.
T Consensus 22 ~~~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~---------~~CP--~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG---------TGCP--VCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT---------TBCS--SSCCBCS
T ss_pred CCCCCCCChHhhCc--cEeCCCCCHHHHHHHHHHhc---------CCCc--CCCCcCc
Confidence 68999999977533 33338999999999999975 6799 6887664
No 54
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=8e-05 Score=53.62 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=40.4
Q ss_pred CCcccccccccCCCCCceeecCCC-----CccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCS-----HSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~Cg-----H~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
....|.||++++...+.+ +++|. |.|..+||.+|+... ....|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~-----~~~~Cp--lCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSS-----DTRCCE--LCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHH-----CCSBCS--SSCCBCCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhC-----CCCCCC--CCCCeeec
Confidence 467899999987655544 45886 999999999999864 347899 68877654
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.68 E-value=1.3e-05 Score=60.24 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=37.4
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
..+.|+||++-+. +.+.+ .|||.||+.||..|+.. ...|| .|+..+..
T Consensus 28 ~~~~CpI~~~~m~--dPV~~-~cGhtf~r~~I~~~l~~-------~~~cP--~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMT--DPVRL-PSGTIMDRSIILRHLLN-------SPTDP--FNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCS--SEEEE-TTTEEEEHHHHHHHTTS-------CSBCS--SSCCBCCT
T ss_pred HhhCCcCccCccc--CCeEC-CCCCEEchHHHHHHHHc-------CCCCC--CCCCCCCh
Confidence 3699999998654 44443 79999999999999972 36899 68877764
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.60 E-value=2.6e-05 Score=53.61 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=36.2
Q ss_pred CCCcccccccccCCCCCceeecCCCCc-cchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 105 DPSFVCEICVESKSPNESFRIKGCSHS-YCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 105 ~~~~~C~IC~~~~~~~~~~~~~~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
.+...|.||++..... .+..++|||. ||.+|+..+.. ..-.|| .|+..+.
T Consensus 6 ~~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~-------~~~~CP--iCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG-CIVHGKTGHLMACFTCAKKLKK-------RNKPCP--VCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE-EEEETTEEEEEECHHHHHHHHH-------TTCCCT--TTCCCCC
T ss_pred CCcCCCCcCCCCCCCE-EEECCCCCChhhHHHHHHHHHH-------cCCcCC--CcCcchh
Confidence 3468999999865422 2212389999 89999998885 235799 6887764
No 57
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.59 E-value=4.3e-05 Score=55.81 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=33.5
Q ss_pred CeeecCCCCeeEEecCCcCeEEe-ccCcceeeccccCc
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIIC-RCGTSFHYYSRADL 252 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~ 252 (292)
..+-||+|...+....+-..++| .|++.||+.|+.+|
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 45669999999988888888999 69999999999999
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.56 E-value=6.9e-05 Score=65.95 Aligned_cols=50 Identities=16% Similarity=0.043 Sum_probs=38.3
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPE 166 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 166 (292)
..+.|+||++.+. +.+. ++|||.||+.||..|+.. ....|| .|+..+...
T Consensus 207 ~~~~c~i~~~~~~--dPv~-~~~gh~f~~~~i~~~~~~------~~~~cP--~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMR--EPCI-TPSGITYDRKDIEEHLQR------VGHFNP--VTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCS--SEEE-CSSCCEEETTHHHHHHHH------TCSSCT--TTCCCCCGG
T ss_pred cccCCcCcCCHhc--CCeE-CCCCCEECHHHHHHHHHH------CCCCCc--CCCCCCchh
Confidence 4799999999664 3343 479999999999999975 123499 688888753
No 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.53 E-value=8e-05 Score=56.57 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=37.4
Q ss_pred CcccccccccCCCC---------------CceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 107 SFVCEICVESKSPN---------------ESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 107 ~~~C~IC~~~~~~~---------------~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
.-+|.||++.+... ..+.++.|+|.|+..||..|+. ....|| .|+..+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-------~~~~CP--~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-------TRQVCP--LDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-------TCSBCS--SSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-------cCCcCc--CCCCcce
Confidence 57899999987643 1234568999999999999987 346899 6887653
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.36 E-value=7.9e-05 Score=52.63 Aligned_cols=42 Identities=26% Similarity=0.670 Sum_probs=32.8
Q ss_pred CcccccccccCCCCCceeecCCCCc-cchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHS-YCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
...|+||++.+. +.+ +++|||. ||..|+..+ ..|| .|+..+.
T Consensus 24 ~~~C~iC~~~~~--~~~-~~pCgH~~~C~~C~~~~-----------~~CP--~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNI--AIV-FVPCGHLVTCKQCAEAV-----------DKCP--MCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBC--CEE-EETTCCBCCCHHHHTTC-----------SBCT--TTCCBCS
T ss_pred CCCCCCCCCCCC--CEE-EcCCCChhHHHHhhhcC-----------ccCC--CcCcCcc
Confidence 588999998653 333 3489999 999998876 6899 6887665
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.31 E-value=9e-05 Score=50.69 Aligned_cols=48 Identities=17% Similarity=0.426 Sum_probs=35.2
Q ss_pred CcccccccccCCCCCceeecCCCCc-cchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHS-YCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
...|.||++..... .+...+|||. ||..|...+... .-.|| -|+..+.
T Consensus 7 ~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~-------~~~CP--iCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKA-------GASCP--ICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHT-------TCBCT--TTCCBCC
T ss_pred CCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHh-------CCcCC--CcCchhh
Confidence 68999999864322 2223499998 999999987752 36899 6887764
No 62
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.31 E-value=5.2e-05 Score=54.62 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=37.2
Q ss_pred CeeecCC--CCeeEEecCCcCeEEe------ccCcceeeccccCccCCCCCC
Q 048441 216 KWKRCPN--CGYYVEKFRGCNIIIC------RCGTSFHYYSRADLSELYPYR 259 (292)
Q Consensus 216 ~~k~CP~--C~~~iek~~GCnhm~C------~C~~~FC~~C~~~~~~~~~y~ 259 (292)
..+-||. |+..|....+...++| .|++.||+.|+.+|+. ..+.
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~ 74 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECS 74 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSS
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Cccc
Confidence 4577887 9999998889999999 7999999999999987 5443
No 63
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.29 E-value=0.00022 Score=66.04 Aligned_cols=48 Identities=31% Similarity=0.801 Sum_probs=37.8
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
...|+||++... +. ..++|||.||..|+..|+.. ....|| .|+..+..
T Consensus 332 ~~~C~ICle~~~--~p-v~lpCGH~FC~~Ci~~wl~~------~~~~CP--~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK--DV-KIEPCGHLMCTSCLTSWQES------EGQGCP--FCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC--CE-EEETTCCEECHHHHHHHHHH------TCSBCT--TTCCBCCE
T ss_pred CCCCCccCcCCC--Ce-EEeCCCChhhHHHHHHHHhc------CCCCCC--CCCCccCC
Confidence 479999998764 33 34599999999999999874 346899 79887764
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.28 E-value=0.00015 Score=60.19 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=38.4
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPE 166 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~ 166 (292)
+.+.||||++-+. +.+. ++|||.||+.||..|+... + ..|| .|+..+...
T Consensus 105 ~~f~CPI~~elm~--DPV~-~~~Ghtfer~~I~~~l~~~---~---~tcP--~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMR--EPCI-TPSGITYDRKDIEEHLQRV---G---HFDP--VTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCS--SEEE-CTTSCEEEHHHHHHHHHHT---C---SBCT--TTCCBCCGG
T ss_pred HhhcccCccccCC--CCeE-CCCCCEECHHHHHHHHHhC---C---CCCC--CCcCCCChh
Confidence 4799999998664 4443 4899999999999999752 2 2699 688877753
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.0002 Score=50.59 Aligned_cols=43 Identities=26% Similarity=0.636 Sum_probs=32.0
Q ss_pred CcccccccccCCCCCceeecCCCCc-cchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHS-YCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
...|+||++.+.. .+ +++|||. ||..|+.. ...|| .|+..+..
T Consensus 25 ~~~C~IC~~~~~~--~~-~~pCgH~~~C~~C~~~-----------~~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA--IV-FVPCGHLVTCKQCAEA-----------VDKCP--MCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC--BC-CSSSCCCCBCHHHHHH-----------CSBCT--TTCCBCCC
T ss_pred CCCCCcCCCCCCC--EE-EecCCCHHHHHHHhhC-----------CCCCc--cCCceecC
Confidence 5789999987543 22 3589999 99999942 26899 68876653
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.00094 Score=46.29 Aligned_cols=44 Identities=23% Similarity=0.653 Sum_probs=33.1
Q ss_pred CCcccccccccCCCCCceeecCCCCc-cchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHS-YCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
....|.||++... + ..+++|||. ||..|+.. ...|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~~--~-~v~~pCgH~~~C~~C~~~-----------~~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTV--N-WVLLPCRHTCLCDGCVKY-----------FQQCP--MCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCC--C-CEETTTTBCCSCTTHHHH-----------CSSCT--TTCCCCCC
T ss_pred CCCCCCCcCcCCC--C-EEEECCCChhhhHHHHhc-----------CCCCC--CCCcchhc
Confidence 3689999998643 3 335699999 99999983 25899 68876653
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.02 E-value=0.00012 Score=56.52 Aligned_cols=50 Identities=22% Similarity=0.382 Sum_probs=0.5
Q ss_pred CcccccccccCCCC--------------C-ceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 107 SFVCEICVESKSPN--------------E-SFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 107 ~~~C~IC~~~~~~~--------------~-~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
.-+|.||++++... + .+..+.|+|.|+..||..|+.. .-.|| .|+..+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-------~~~CP--~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-------RQVCP--LDNREWEF 112 (117)
T ss_dssp C-------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-------CCcCC--CCCCeeee
Confidence 46899999988532 1 1222489999999999999984 35799 68876543
No 68
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.01 E-value=0.00041 Score=50.52 Aligned_cols=25 Identities=48% Similarity=1.110 Sum_probs=23.4
Q ss_pred eeccCCCCCc---cCCCCchhHHHhccc
Q 048441 177 MFCAKCKVPW---HTDMKCEDFQNLNEN 201 (292)
Q Consensus 177 ~~C~~C~~~~---H~~~~C~~~~~~~~~ 201 (292)
.||+.|+.+| |.+++|.++++|.++
T Consensus 52 ~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 52 TFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp EECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred ccccccCCchhhcCCCCChHHHHHHHHh
Confidence 8999999999 999999999998765
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.80 E-value=0.00042 Score=49.55 Aligned_cols=43 Identities=28% Similarity=0.787 Sum_probs=32.6
Q ss_pred CcccccccccCCCCCceeecCCCCc-cchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHS-YCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
...|+||++... +.+ +++|||. ||..|+..+ ..|| .|+..+..
T Consensus 18 ~~~C~IC~~~~~--~~v-~~pCgH~~~C~~C~~~~-----------~~CP--~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI--NST-FCPCGHTVCCESCAAQL-----------QSCP--VCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC--CEE-EETTCBCCBCHHHHTTC-----------SBCT--TTCCBCCE
T ss_pred CCEeEEeCcccC--cEE-EECCCCHHHHHHHHHhc-----------CcCC--CCCchhhC
Confidence 578999998653 333 4589999 999999754 2899 69887664
No 70
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.54 E-value=0.015 Score=40.98 Aligned_cols=70 Identities=20% Similarity=0.362 Sum_probs=49.4
Q ss_pred CCCCcccccccccCCCCCceeec-CCCCccchhhHHHHHHHHHhcCccccCCCC-CCCCC-------CCCHHHHHhhCCC
Q 048441 104 NDPSFVCEICVESKSPNESFRIK-GCSHSYCTDCIIKYVASKLQESITTIGCPV-TGCQG-------VLEPEYCRNILPQ 174 (292)
Q Consensus 104 ~~~~~~C~IC~~~~~~~~~~~~~-~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~-~~C~~-------~l~~~~i~~~l~~ 174 (292)
+....-|.+|-+-++...++... .=.|.||..|-+.+|+.+... ..++||. ..|.. .+-..+|..+|..
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~--~EvyCPSG~kCpL~gS~~PWAFmqgEIatILg~ 89 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGAT--GEVYCPSGEKCPLVGSNVPWAFMQGEIATILSG 89 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSS--SCCCCTTSSCCBCSSSSSBCCCCHHHHHHHHSC
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCC--CcEECCCCCccccCCCcCchHHHhhHHHHHhcc
Confidence 34579999999998877766542 236999999999999987543 6688886 24542 2334567777664
Q ss_pred C
Q 048441 175 Q 175 (292)
Q Consensus 175 ~ 175 (292)
+
T Consensus 90 ~ 90 (93)
T 2cs3_A 90 P 90 (93)
T ss_dssp S
T ss_pred c
Confidence 3
No 71
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.22 E-value=0.0031 Score=44.47 Aligned_cols=50 Identities=22% Similarity=0.522 Sum_probs=37.9
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
...+|.||++.+.... ....|+|.|-..||..||+.. ..-.|| .|+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~-----~~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSN-----AEPRCP--HCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTC-----SSCCCT--TTCSCCC
T ss_pred CCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhc-----CCCCCC--CCcCcCC
Confidence 3689999999886433 344899999999999999732 226899 5876554
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.03 E-value=0.0042 Score=42.01 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=37.4
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYC 168 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i 168 (292)
.+.|+|+++.+. +.+....+||.|++.||..||... -.|| ..+..|..+++
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~~~-------~~cP--~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDT-------GNDP--ITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHHHH-------SBCT--TTCCBCCGGGC
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHHhC-------CCCc--CCcCCCChhhc
Confidence 488999999765 333333799999999999999852 1388 57777776544
No 73
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.02 E-value=0.0023 Score=58.54 Aligned_cols=43 Identities=23% Similarity=0.774 Sum_probs=33.2
Q ss_pred CCcccccccccCCCCCceeecCCCCc-cchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHS-YCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~-fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
+...|+||++.+. +.+ +++|||. ||..|+..+ ..|| .|+..+.
T Consensus 294 ~~~~C~IC~~~~~--~~v-~lpCgH~~fC~~C~~~~-----------~~CP--~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEV--SVV-FIPCGHLVVCQECAPSL-----------RKCP--ICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBC--CEE-EETTCCEEECTTTGGGC-----------SBCT--TTCCBCC
T ss_pred CCCCCCccCCcCC--ceE-EcCCCChhHhHHHHhcC-----------CcCC--CCCCCcc
Confidence 3589999999654 333 3499999 999999865 5899 6887765
No 74
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=95.78 E-value=0.0022 Score=45.95 Aligned_cols=43 Identities=33% Similarity=0.678 Sum_probs=31.2
Q ss_pred ccCCCCCCCCCCCCHHH-HHhhCC-------CCceeccCCCCCccCCCCchh
Q 048441 151 TIGCPVTGCQGVLEPEY-CRNILP-------QQVMFCAKCKVPWHTDMKCED 194 (292)
Q Consensus 151 ~i~CP~~~C~~~l~~~~-i~~~l~-------~~~~~C~~C~~~~H~~~~C~~ 194 (292)
.++||.++|+..+..+. ...+.- -...||+.|+..||. .+|.+
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 78999999998775432 111222 223899999999999 99976
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.81 E-value=0.019 Score=42.51 Aligned_cols=33 Identities=21% Similarity=0.675 Sum_probs=26.3
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIK 139 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~ 139 (292)
...|+||.+.+....+...+.|+|.||..|++.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 588999997644344455579999999999998
No 76
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.22 E-value=0.033 Score=50.53 Aligned_cols=58 Identities=17% Similarity=0.409 Sum_probs=41.1
Q ss_pred CCcccccccccCCC-CCce----eecCCCCccchhhHHHHHHHHHhc----CccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSP-NESF----RIKGCSHSYCTDCIIKYVASKLQE----SITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~-~~~~----~~~~CgH~fC~~Cl~~~i~~~i~~----~~~~i~CP~~~C~~~l~~ 165 (292)
...+|.||++.+.. ..+. ....|+|.|...|+..|+.+.-.. +...=.|| -|+..++-
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCc
Confidence 36899999998765 2221 124799999999999999975432 22334799 68877653
No 77
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.14 E-value=0.079 Score=35.46 Aligned_cols=48 Identities=25% Similarity=0.549 Sum_probs=34.4
Q ss_pred CcccccccccCCCCCceeecCC--CC---ccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNESFRIKGC--SH---SYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~C--gH---~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
...|-||+++.. ..+ +++| .+ .|-.+|+..|+..+ ....|| .|+..+.
T Consensus 6 ~~~CrIC~~~~~-~~l--~~PC~C~gs~~~~H~~Cl~~W~~~~-----~~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELG-NER--FRACGCTGELENVHRSCLSTWLTIS-----RNTACQ--ICGVVYN 58 (60)
T ss_dssp CCEETTTTEECS-CCC--CCSCCCSSGGGSCCHHHHHHHHHHH-----TCSBCT--TTCCBCC
T ss_pred CCEeEEeecCCC-Cce--ecCcCCCCchhhhHHHHHHHHHHhC-----CCCccC--CCCCeee
Confidence 578999998743 233 2455 45 89999999999864 247899 6876553
No 78
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.69 E-value=0.092 Score=38.81 Aligned_cols=46 Identities=28% Similarity=0.632 Sum_probs=31.0
Q ss_pred ccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 109 VCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 109 ~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
-|++|--++. .-..+.+|.|+||.+|...|.+. ..-.|| .|+..+.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~------~~k~Cp--~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKK------GDKMCP--GCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHT------TCCBCT--TTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhc------cCCCCc--CcCCeee
Confidence 5777775543 22345699999999999998864 223566 4665554
No 79
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=89.14 E-value=0.067 Score=39.47 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=27.0
Q ss_pred eecCCCCeeEEecCCcCeEEe-ccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIIC-RCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 254 (292)
-.||-|...+. +-++| .|||.||+.|...|-.
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHHHH
Confidence 57999999885 46787 7999999999998854
No 80
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.25 E-value=0.31 Score=31.30 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=19.7
Q ss_pred CeeecCCCCeeEEecCCcCeEEe-ccCcce
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIIC-RCGTSF 244 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 244 (292)
..+.||+|+..+.-...=+.+.| +||+.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 46899999974332222278999 898754
No 81
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=86.93 E-value=0.34 Score=39.04 Aligned_cols=62 Identities=19% Similarity=0.391 Sum_probs=39.2
Q ss_pred cccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCHHHHHhhCCCC---ceeccCCCC
Q 048441 108 FVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEPEYCRNILPQQ---VMFCAKCKV 184 (292)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~~~i~~~l~~~---~~~C~~C~~ 184 (292)
..||+|...+...+++.. ..+...|.+ ..++||+.+|+..+...+++..+..- .+.|..|+.
T Consensus 54 ~~CP~Cr~~~~~~~~~~~-------------~~~~~~i~~--l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~ 118 (170)
T 3hcs_A 54 HKCPVDNEILLENQLFPD-------------NFAKREILS--LMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQR 118 (170)
T ss_dssp SBCTTTCCBCCGGGCEEC-------------HHHHHHHHT--SEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCC
T ss_pred CCCCCCccCcchhhhhhh-------------HHHHHHHhh--cccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCCh
Confidence 378888766554433321 223333332 78999999999999988877765332 266766654
No 82
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.73 E-value=0.099 Score=34.75 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=26.3
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+. +-++-.|||.||+.|...|-.
T Consensus 20 ~~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQ-----KPVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCS-----SCEECTTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhC-----CeEEeCCCCcchHHHHHHHHH
Confidence 357999998775 345558999999999999864
No 83
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=85.19 E-value=0.67 Score=29.46 Aligned_cols=28 Identities=29% Similarity=0.562 Sum_probs=21.4
Q ss_pred eeecCCCCe-eEEecCCcCeEEe-ccCcce
Q 048441 217 WKRCPNCGY-YVEKFRGCNIIIC-RCGTSF 244 (292)
Q Consensus 217 ~k~CP~C~~-~iek~~GCnhm~C-~C~~~F 244 (292)
...||.|+. .+.....=..+.| .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 457999998 7777766677888 687655
No 84
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=84.97 E-value=0.25 Score=32.46 Aligned_cols=28 Identities=32% Similarity=0.607 Sum_probs=20.4
Q ss_pred eeecCCCCeeEEecCCcCeEEe-ccCcce
Q 048441 217 WKRCPNCGYYVEKFRGCNIIIC-RCGTSF 244 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C-~C~~~F 244 (292)
.+.||+|+..+.-...-+.++| +|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 4789999985543334468999 899875
No 85
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.87 E-value=0.16 Score=34.64 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=26.3
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+. +-++-.|||.||+.|...|-.
T Consensus 20 ~~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQ-----KPVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCS-----SEEECTTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccC-----CeEEcCCCChhhHHHHHHHHH
Confidence 467999998765 345558999999999999875
No 86
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=84.29 E-value=0.68 Score=33.05 Aligned_cols=31 Identities=32% Similarity=0.616 Sum_probs=26.3
Q ss_pred CCeeecCCCCeeEEecCCcCeEEe-ccCccee
Q 048441 215 MKWKRCPNCGYYVEKFRGCNIIIC-RCGTSFH 245 (292)
Q Consensus 215 ~~~k~CP~C~~~iek~~GCnhm~C-~C~~~FC 245 (292)
...-.||.|+....+..+-..+.| .|++.|-
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 345789999999998888889999 7998874
No 87
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.10 E-value=0.23 Score=33.86 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=25.4
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+.. -++-.|||.||+.|...|-.
T Consensus 15 ~~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~ 47 (71)
T 2d8t_A 15 VPECAICLQTCVH-----PVSLPCKHVFCYLCVKGASW 47 (71)
T ss_dssp CCBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTT
T ss_pred CCCCccCCcccCC-----CEEccCCCHHHHHHHHHHHH
Confidence 3579999887642 35558999999999998864
No 88
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=82.97 E-value=0.73 Score=39.56 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=37.4
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
...|.||.+-+... ..+..|+|.|...|+..|++. .....|| .|+...+
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~-----~~~~~CP--~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQS-----NAEPRCP--HCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTT-----CSSCBCT--TTCCBCC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHh-----CCCCCCC--CCCCCCC
Confidence 68999999977643 344469999999999999964 1346899 6876544
No 89
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=82.65 E-value=0.25 Score=36.63 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=27.1
Q ss_pred eeecCCCCeeEEecCCcCeEEe-ccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIIC-RCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 254 (292)
.-.||-|...+. +-++. .|||.||+.|...|-.
T Consensus 15 ~~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHh-----CcCEeCCCCChhhHHHHHHHHH
Confidence 357999998875 35777 8999999999998864
No 90
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.56 E-value=0.2 Score=35.45 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=26.6
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+..... .-+.-.|||.||+.|...|-.
T Consensus 15 ~~~C~IC~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~~~ 51 (88)
T 2ct2_A 15 VLECPICMESFTEEQL-RPKLLHCGHTICRQCLEKLLA 51 (88)
T ss_dssp CCBCTTTCCBCCTTSS-CEEECSSSCEEEHHHHHHHHH
T ss_pred CCCCccCCccccccCC-CeEECCCCChhhHHHHHHHHH
Confidence 4579999988754321 134448999999999998854
No 91
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=81.75 E-value=0.21 Score=34.45 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=25.7
Q ss_pred eecCCCCeeEEecCCcCeEEec-cCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIICR-CGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~-C~~~FC~~C~~~~~~ 254 (292)
..||-|...+. +-++-. |||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GSCSSSCCCCT-----TCEECSSSCCEECTTHHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHHHH
Confidence 57999988775 346666 999999999998864
No 92
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.75 E-value=0.73 Score=32.68 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=25.3
Q ss_pred eecCCCCeeEEecCCcCeEEe-ccC-----cceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIIC-RCG-----TSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C-~C~-----~~FC~~C~~~~~~ 254 (292)
..||.|+..++..+| +..| .|+ .-||-.|++++..
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHHH
Confidence 468888888888777 5567 676 3378888887764
No 93
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=81.71 E-value=0.21 Score=34.59 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=26.2
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccCC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSEL 255 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~ 255 (292)
.-.||-|...+.. -++-.|||.||+.|...|-..
T Consensus 12 ~~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 12 EVTCPICLELLTE-----PLSLDCGHSLCRACITVSNKE 45 (79)
T ss_dssp CCEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCC
T ss_pred CCCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHh
Confidence 3579999987642 344589999999999988653
No 94
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=81.17 E-value=0.83 Score=31.30 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=23.5
Q ss_pred eeecCCCCeeEEecCCcCeEEe-ccCcce
Q 048441 217 WKRCPNCGYYVEKFRGCNIIIC-RCGTSF 244 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C-~C~~~F 244 (292)
.-.||.|+..++...+...++| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4579999999998888889999 687665
No 95
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=80.98 E-value=0.32 Score=39.05 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=26.5
Q ss_pred eecCCCCeeEEecCCcCeEEe-ccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIIC-RCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 254 (292)
-.||-|...+. +-++. .|||.||+.|...|-.
T Consensus 55 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 55 LMCPICLDMLK-----NTMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHH
T ss_pred CCCcccChHhh-----CcCEeCCCCChhHHHHHHHHHH
Confidence 47999988876 35777 8999999999988864
No 96
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.81 E-value=0.22 Score=33.40 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=25.7
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+.. -++-.|||.||+.|...|-.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 15 KYKCEKCHLVLCS-----PKQTECGHRFCESCMAALLS 47 (66)
T ss_dssp CEECTTTCCEESS-----CCCCSSSCCCCHHHHHHHHT
T ss_pred CCCCCCCChHhcC-----eeECCCCCHHHHHHHHHHHH
Confidence 4679999988753 23347999999999999874
No 97
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.44 E-value=0.33 Score=33.94 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=25.2
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+.. -++-.|||.||+.|...|-.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp CSBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHH
Confidence 3579999888743 34557999999999988854
No 98
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=80.40 E-value=0.23 Score=33.62 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=27.3
Q ss_pred CeeecCCCCeeEEec--CCcCeEEeccCcceeeccccCccC
Q 048441 216 KWKRCPNCGYYVEKF--RGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 216 ~~k~CP~C~~~iek~--~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
....||-|...+... .|-..+.-.|||.||+.|...|-.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 49 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH
Confidence 346799998887543 232223348999999999998864
No 99
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.40 E-value=0.44 Score=32.69 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=26.3
Q ss_pred eeecCCCCeeEEecCCcCeEEe-ccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIIC-RCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+.... .+.. .|+|.||+.|...|-.
T Consensus 23 ~~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp CCEETTTTEECCBTC---EEEEETTTEEEETTHHHHHHH
T ss_pred CCCCeECCcccCCCC---eEEEECCCCHhHHHHHHHHHH
Confidence 467999998775432 3444 7999999999999864
No 100
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=80.22 E-value=0.28 Score=35.12 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=25.1
Q ss_pred eecCCCCeeEEecCCcCeEEec-cCcceeeccccCcc
Q 048441 218 KRCPNCGYYVEKFRGCNIIICR-CGTSFHYYSRADLS 253 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~-C~~~FC~~C~~~~~ 253 (292)
-.||-|...+. +-++-. |||.||+.|...|-
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~ 45 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTAL 45 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHHH
Confidence 57999998775 346666 99999999998874
No 101
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=80.07 E-value=0.36 Score=37.63 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=25.5
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
-.||-|.-.+. +-++-.|||.||+.|...|-.
T Consensus 54 ~~C~iC~~~~~-----~~~~~~CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTLNCAHSFCSYCINEWMK 85 (138)
T ss_dssp SBCTTTCSBCS-----SEEEETTSCEEEHHHHHHHTT
T ss_pred CCCcccCcccC-----CceECCCCCCccHHHHHHHHH
Confidence 36999998774 335568999999999998864
No 102
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=79.47 E-value=0.34 Score=35.27 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=26.3
Q ss_pred eecCCCCeeEEecCCcCeEEe-ccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIIC-RCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 254 (292)
-.||-|...+. +-++. .|||.||+.|...|-.
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 23 LRCGICFEYFN-----IAMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHT
T ss_pred CCcccCChhhC-----CcCEECCCCCHhhHHHHHHHHH
Confidence 57999998775 35677 7999999999998875
No 103
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.33 E-value=0.24 Score=33.85 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=24.6
Q ss_pred eecCCCCeeEEecCCcCeEEe-ccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIIC-RCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 254 (292)
..||-|...+.. -++- .|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHH
Confidence 579999887753 4566 7899999999888753
No 104
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=79.18 E-value=0.34 Score=33.53 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=26.0
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcceeeccccCccCC
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSEL 255 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~ 255 (292)
-.||-|...+. +-++-.|||.||..|...|-..
T Consensus 9 ~~C~IC~~~~~-----~Pv~~~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIVSTGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSCTTTSCCCS-----SEEEETTTEEEEHHHHHHHHTT
T ss_pred CCCCCcccccc-----CCEEcCCCCeecHHHHHHHHHH
Confidence 46999988774 3456689999999999988753
No 105
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=78.30 E-value=0.4 Score=36.50 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=25.2
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
-.||-|.-.+. +-++-.|||.||..|...|-.
T Consensus 53 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTVCQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEeeCCCcccHHHHHHHHh
Confidence 47999998775 335558999999999988764
No 106
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=78.13 E-value=5.3 Score=28.64 Aligned_cols=51 Identities=22% Similarity=0.452 Sum_probs=36.8
Q ss_pred CCcccccccccCCC----CCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCC
Q 048441 106 PSFVCEICVESKSP----NESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLE 164 (292)
Q Consensus 106 ~~~~C~IC~~~~~~----~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~ 164 (292)
....|.||-+++-. ..++....|+-..|+.|+.--.+. ..-.|| .|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke------G~q~Cp--qCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE------GTQNCP--QCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT------SCSSCT--TTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc------cCcccc--ccCCccc
Confidence 35799999998732 234445678889999999766653 557898 6876654
No 107
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=78.08 E-value=0.31 Score=34.00 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=24.8
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
-.||-|...+.. -++-.|||.||+.|...|-.
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSADCNHSFCRACITLNYE 51 (85)
T ss_dssp TSCTTTCSCCSS-----CEECTTSCCBCHHHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeCCCCCHHHHHHHHHHHH
Confidence 479999887642 35568999999999988753
No 108
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=77.79 E-value=0.42 Score=37.58 Aligned_cols=32 Identities=16% Similarity=0.445 Sum_probs=26.1
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
-.||-|...+. +-++..|||.||+.|...|-.
T Consensus 32 ~~C~IC~~~~~-----~pv~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GBCTTTCSBCS-----SEEECTTSCEEEHHHHHHHGG
T ss_pred cCCCCCChhhc-----CcEECCCCCccCHHHHHHHHh
Confidence 57999998875 336678999999999998864
No 109
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=77.64 E-value=0.62 Score=31.27 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=25.9
Q ss_pred CeeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
....||-|...+... -..+.-.|||.||+.|...|-.
T Consensus 13 ~~~~C~IC~~~~~~~--~~~~~~~C~H~fc~~Ci~~~~~ 49 (69)
T 2kiz_A 13 TEEKCTICLSILEEG--EDVRRLPCMHLFHQVCVDQWLI 49 (69)
T ss_dssp CCCSBTTTTBCCCSS--SCEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCeeCCccccCC--CcEEEeCCCCHHHHHHHHHHHH
Confidence 346799998776432 2223337999999999998864
No 110
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=77.50 E-value=0.35 Score=31.79 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=25.0
Q ss_pred eecCCCCeeEEecC-CcCe-EEeccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFR-GCNI-IICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~-GCnh-m~C~C~~~FC~~C~~~~~~ 254 (292)
..||-|...+.... +=.. +.-.|||.||..|...|-.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 42 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH
Confidence 46888877765431 1123 3348999999999998864
No 111
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.37 E-value=0.35 Score=33.02 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=26.0
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+.... ..+...|+|.||+.|...|-.
T Consensus 15 ~~~C~IC~~~~~~~~--~~~~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 15 HELCAVCLEDFKPRD--ELGICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp SCBCSSSCCBCCSSS--CEEEETTTEEEEHHHHHHHHH
T ss_pred CCCCcCCCcccCCCC--cEEEcCCCCEecHHHHHHHHH
Confidence 467999998875432 223347999999999998864
No 112
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=77.09 E-value=0.68 Score=31.24 Aligned_cols=32 Identities=34% Similarity=0.586 Sum_probs=25.6
Q ss_pred CeeecCCCCeeEEecCCcCeEEeccCcceeeccccC
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRAD 251 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~ 251 (292)
...+|..|+..+... -+.|+||..||-.-.-+
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HRy~ 45 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT----GFMCRCGTTFCGSHRYP 45 (64)
T ss_dssp SCCCCTTTCCCCCTT----CEECSSSCEECTTTCST
T ss_pred cCCcChhhCCccCcc----CEEeecCCEeccccCCc
Confidence 457899999988765 48999999999876544
No 113
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=76.95 E-value=0.65 Score=32.00 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=25.0
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+.... ..+.-.|+|.||+.|...|-.
T Consensus 15 ~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~ 50 (78)
T 2ect_A 15 GLECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWLE 50 (78)
T ss_dssp SCCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHHT
T ss_pred CCCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHHH
Confidence 467999987764322 122236999999999998864
No 114
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=76.72 E-value=2.3 Score=28.73 Aligned_cols=32 Identities=31% Similarity=0.665 Sum_probs=26.2
Q ss_pred CCcccccccccCCCCCceeecCC-CCccchhhHHHHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGC-SHSYCTDCIIKYV 141 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~C-gH~fC~~Cl~~~i 141 (292)
+..-|.||.++- .+...+| +-.||..||+..=
T Consensus 7 e~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDA----TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCC----CEEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCC----eEEecCCCCceehHHHHHHHc
Confidence 468899999862 3677899 7899999999864
No 115
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=76.58 E-value=1.7 Score=31.74 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=31.0
Q ss_pred CeeecCCCCeeEEecCCcCeEEe-ccCcc-----eeeccccCccCCC
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIIC-RCGTS-----FHYYSRADLSELY 256 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~-----FC~~C~~~~~~~~ 256 (292)
+...||.|+..++..+| +..| .|... ||-.|++++....
T Consensus 31 M~~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~LevLk 75 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQVLK 75 (101)
T ss_dssp CCCBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCEEEE
T ss_pred ccccCccCCCcceecCC--EEECccccchhhccccCcchhhHHHHHH
Confidence 34789999999999988 7789 78854 6889988877443
No 116
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.93 E-value=0.4 Score=32.36 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=24.9
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+.. +.-.|||.||+.|...|-.
T Consensus 15 ~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 15 EEECCICMDGRAD------LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCSSSCCSCCS------EEETTTEEECHHHHHHSSC
T ss_pred CCCCeeCCcCccC------cccCCCCcccHHHHHHHHH
Confidence 4679999887643 4457999999999998864
No 117
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=75.84 E-value=0.73 Score=31.99 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=25.0
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRAD 251 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~ 251 (292)
..+|..|+..|...+ +.|+|+..||-.-.-+
T Consensus 25 ~nRC~~CrKkvgL~g----f~CrCg~~FCs~HRy~ 55 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG----FDCRCGNLFCGLHRYS 55 (74)
T ss_dssp TTBCSSSCCBCGGGC----EECTTSCEECSSSCST
T ss_pred CCcChhhCCcccccC----eecCCCCEechhcCCC
Confidence 358999999988763 8999999999866544
No 118
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=75.32 E-value=0.53 Score=35.50 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=24.7
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcceeeccccCcc
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLS 253 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 253 (292)
-.||-|...+.. -++..|||.||+.|...|-
T Consensus 19 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 49 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSI 49 (118)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEECCcCChhhHHHHHHHH
Confidence 579999988752 3556899999999998875
No 119
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.90 E-value=0.37 Score=32.18 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=26.2
Q ss_pred eeecCCCCeeEEecC--CcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFR--GCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~--GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+.... +-.-+.-.|||.||+.|...|-.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH
Confidence 467999988775432 22223337999999999998853
No 120
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=74.09 E-value=0.58 Score=33.57 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=26.3
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|...+.... ..++-.|||.||+.|...|-.
T Consensus 40 ~~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 40 EMCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp CSEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHT
T ss_pred CCCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHH
Confidence 357999987775432 223337999999999999865
No 121
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=73.90 E-value=0.75 Score=34.37 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=25.1
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcceeeccccCccCC
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSEL 255 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~ 255 (292)
-.||-|...+.. -++=.|||.||+.|...|-..
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 48 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEK 48 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCT
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhH
Confidence 469999877642 234489999999999988753
No 122
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.61 E-value=0.38 Score=33.51 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=24.5
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCcc
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLS 253 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 253 (292)
...||-|...+.. -++-.|||.||..|...|-
T Consensus 19 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----PLSLDCGHSFCQACLTANH 50 (85)
T ss_dssp CCCCTTTCSCCSS-----CBCCSSSCCBCTTHHHHHH
T ss_pred CCCCCCCCcccCC-----ceeCCCCCHHHHHHHHHHH
Confidence 3579999988743 2334799999999998874
No 123
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=73.05 E-value=0.66 Score=34.76 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=25.2
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
-.||-|...+. +-++-.|||.||+.|...|-.
T Consensus 24 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 24 ISCQICEHILA-----DPVETSCKHLFCRICILRCLK 55 (116)
T ss_dssp TBCTTTCSBCS-----SEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCcHhc-----CcEEcCCCCcccHHHHHHHHh
Confidence 56999998875 235558999999999988764
No 124
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=72.25 E-value=0.87 Score=30.72 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=25.0
Q ss_pred CeeecCCCCeeEEecCCcCeEEeccCcceeeccccC
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRAD 251 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~ 251 (292)
...+|..|+..+... -+.|+||..||-.-.-+
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HR~~ 45 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCKCGSTFCGSHRYP 45 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECTTSCEECSSSCSS
T ss_pred cCCcChhhCCccccc----CeEeecCCEecccCCCc
Confidence 346899999887654 48999999999876654
No 125
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=71.98 E-value=0.73 Score=34.67 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=25.1
Q ss_pred eecCCCCeeEEecCCcCeEEe-ccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIIC-RCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 254 (292)
-.||-|...+. +-++- .|||.||+.|...|-.
T Consensus 23 ~~C~IC~~~~~-----~pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILR-----EPVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCS-----SCBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhh-----CccEeCCCCCHHHHHHHHHHhc
Confidence 57999988774 23444 7999999999998864
No 126
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=71.02 E-value=4.7 Score=29.26 Aligned_cols=47 Identities=19% Similarity=0.450 Sum_probs=34.0
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
..+.|-.|+-.. ..++. -..|.+|..|+...+. ..=.|| -|...|+-
T Consensus 27 G~~nCKsCWf~~--k~LV~--C~dHYLCl~CLtlmL~-------~SdrCp--IC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFEN--KGLVE--CNNHYLCLNCLTLLLS-------VSNRCP--ICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCC--SSEEE--CSSCEEEHHHHHHTCS-------SSSEET--TTTEECCC
T ss_pred CcccChhhcccc--CCeee--ecchhhHHHHHHHHHh-------hccCCc--ccCCcCCc
Confidence 479999999543 33443 2569999999998886 446788 68876653
No 127
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=70.17 E-value=1.2 Score=30.86 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=25.1
Q ss_pred CeeecCCCCeeEEecCCcCeEEeccCcceeeccccC
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRAD 251 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~ 251 (292)
...+|..|+..+... -+.|+|+..||-.-.-+
T Consensus 24 ~~~RC~~C~kkvgL~----~f~CrCg~~FCs~HRy~ 55 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT----GFKCRCGSTFCGTHRYP 55 (74)
T ss_dssp CCCBCSSSCCBCTTT----CEECTTSCEECTTTCST
T ss_pred cCccchhhcCccccc----ceEeccCCEeccccCCC
Confidence 457899999888765 48999999999765543
No 128
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=69.80 E-value=3.4 Score=28.35 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=22.7
Q ss_pred eeecCCCCeeEEecCCcCeEEe-ccCcceee
Q 048441 217 WKRCPNCGYYVEKFRGCNIIIC-RCGTSFHY 246 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~ 246 (292)
.-.||.|+..++...+=..++| .||..|=-
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCceecC
Confidence 4579999999988766567888 67766533
No 129
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.51 E-value=0.49 Score=35.03 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=24.2
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
..||-|...+.. -++-.|||.||+.|...|-.
T Consensus 22 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 22 LECPICLELIKE-----PVSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp TSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHH
T ss_pred CCCcccChhhcC-----eEECCCCCHHHHHHHHHHHH
Confidence 579999887642 23347999999999988764
No 130
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=69.24 E-value=0.91 Score=35.96 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=25.4
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcceeeccccCccCC
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSEL 255 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~ 255 (292)
-.||-|...+. +-++-.|||.||+.|...|-..
T Consensus 79 ~~C~IC~~~~~-----~pv~~~CgH~fC~~Ci~~~~~~ 111 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVTTECFHNVCKDCLQRSFKA 111 (150)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHHHT
T ss_pred CEeecCChhhc-----CCEEcCCCCchhHHHHHHHHHh
Confidence 57999988774 3455589999999999887653
No 131
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=67.49 E-value=3.1 Score=28.35 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=21.4
Q ss_pred eeecCCCCeeEEecCCcCeEEe-ccCcce
Q 048441 217 WKRCPNCGYYVEKFRGCNIIIC-RCGTSF 244 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C-~C~~~F 244 (292)
.-.||.|+..++...+=..++| .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 3579999999888766567888 677655
No 132
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=66.50 E-value=1.8 Score=30.88 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=25.4
Q ss_pred CeeecCCCCeeEEecCCcCeEEeccCcceeeccccC
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRAD 251 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~ 251 (292)
...+|..|+..+-.. +-+.|+||..||-.-.-+
T Consensus 24 ~~~rC~~C~kkvgl~---~~f~CrCg~~FC~~HRy~ 56 (85)
T 1wff_A 24 IMKHCFLCGKKTGLA---TSFECRCGNNFCASHRYA 56 (85)
T ss_dssp CCCBCSSSCCBCSSS---SCEECTTCCEECTTTCST
T ss_pred cCccchhhCCeeccc---CCeEcCCCCEecccCCCc
Confidence 346899999887654 349999999999876544
No 133
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=65.03 E-value=3.7 Score=28.08 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=20.7
Q ss_pred eecCCCCeeEEecCCcCeEEe-ccCcce
Q 048441 218 KRCPNCGYYVEKFRGCNIIIC-RCGTSF 244 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C-~C~~~F 244 (292)
-.||.|+..++...+=..++| .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 579999999887765567888 576655
No 134
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=62.76 E-value=4.7 Score=33.25 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=21.7
Q ss_pred eeecCCCCee-EEecCCcCeEEe-ccCcceee
Q 048441 217 WKRCPNCGYY-VEKFRGCNIIIC-RCGTSFHY 246 (292)
Q Consensus 217 ~k~CP~C~~~-iek~~GCnhm~C-~C~~~FC~ 246 (292)
.+.||+|+.. +.....+.| +| +|++.|.|
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred cccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 4889999965 334556666 99 99998875
No 135
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=62.58 E-value=11 Score=26.45 Aligned_cols=36 Identities=17% Similarity=0.377 Sum_probs=26.8
Q ss_pred CCCcccccccccCCCCC-ceeecCCCCccchhhHHHH
Q 048441 105 DPSFVCEICVESKSPNE-SFRIKGCSHSYCTDCIIKY 140 (292)
Q Consensus 105 ~~~~~C~IC~~~~~~~~-~~~~~~CgH~fC~~Cl~~~ 140 (292)
.....|.+|...|.... -.....||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 44689999999876432 2345689999999997653
No 136
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=61.63 E-value=3 Score=33.09 Aligned_cols=31 Identities=23% Similarity=0.540 Sum_probs=23.1
Q ss_pred eeecCC--CCeeEEecCCcCeEEe-ccCcceeec
Q 048441 217 WKRCPN--CGYYVEKFRGCNIIIC-RCGTSFHYY 247 (292)
Q Consensus 217 ~k~CP~--C~~~iek~~GCnhm~C-~C~~~FC~~ 247 (292)
-+.||+ |+.-|.-..-=+..+| +|++.+++.
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKVN 151 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEEC
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEec
Confidence 478999 9986544433367899 999998874
No 137
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=60.37 E-value=5.1 Score=27.18 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=21.7
Q ss_pred eeecCCCCeeEEecCCcCeEEe-ccCccee
Q 048441 217 WKRCPNCGYYVEKFRGCNIIIC-RCGTSFH 245 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC 245 (292)
.-.||.|+..++....=..++| .|+..|=
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCcccc
Confidence 4689999999887765567888 5776553
No 138
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=60.17 E-value=6.7 Score=27.50 Aligned_cols=34 Identities=21% Similarity=0.584 Sum_probs=25.5
Q ss_pred CCcccccccccCCCCC-ceeecCCCCccchhhHHH
Q 048441 106 PSFVCEICVESKSPNE-SFRIKGCSHSYCTDCIIK 139 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~-~~~~~~CgH~fC~~Cl~~ 139 (292)
+...|.+|...|.... -.....||.+||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 3678999998876432 234568999999999864
No 139
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.66 E-value=1.7 Score=30.31 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=24.8
Q ss_pred ecCCCCeeEEe----------cCCcCeEEeccCcceeeccccCccCC
Q 048441 219 RCPNCGYYVEK----------FRGCNIIICRCGTSFHYYSRADLSEL 255 (292)
Q Consensus 219 ~CP~C~~~iek----------~~GCnhm~C~C~~~FC~~C~~~~~~~ 255 (292)
.|+-|...++. .+.+..+.-.|+|.|+..|..+|-..
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 63 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ 63 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh
Confidence 46666665543 23344455579999999999999653
No 140
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=58.27 E-value=4.7 Score=30.26 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=22.5
Q ss_pred eeecCCCCeeEEecC----CcCeEEe-ccCcce
Q 048441 217 WKRCPNCGYYVEKFR----GCNIIIC-RCGTSF 244 (292)
Q Consensus 217 ~k~CP~C~~~iek~~----GCnhm~C-~C~~~F 244 (292)
.+.||.|+.++.... |.+.+.| .|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 467999999975542 6889999 699977
No 141
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=58.17 E-value=2.9 Score=32.51 Aligned_cols=33 Identities=12% Similarity=0.316 Sum_probs=23.7
Q ss_pred HHhCCeeecCCCCeeEEec----CCcCeEEe-ccCcce
Q 048441 212 AVEMKWKRCPNCGYYVEKF----RGCNIIIC-RCGTSF 244 (292)
Q Consensus 212 ~~~~~~k~CP~C~~~iek~----~GCnhm~C-~C~~~F 244 (292)
+.....+.||.|+.++... .|.+.+.| .|+|.+
T Consensus 19 ~~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 19 SHMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp ---CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3345679999999997443 26888999 699976
No 142
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=57.95 E-value=1.7 Score=32.16 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=24.7
Q ss_pred eecCCCCeeEEecCCc------------CeEEe-ccCcceeeccccCcc
Q 048441 218 KRCPNCGYYVEKFRGC------------NIIIC-RCGTSFHYYSRADLS 253 (292)
Q Consensus 218 k~CP~C~~~iek~~GC------------nhm~C-~C~~~FC~~C~~~~~ 253 (292)
..||-|...++...+. ..+.- .|+|.||..|+..|-
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH
Confidence 4799998887543211 12223 699999999998886
No 143
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.36 E-value=6 Score=30.24 Aligned_cols=34 Identities=21% Similarity=0.503 Sum_probs=25.5
Q ss_pred CcccccccccCCCCC-ceeecCCCCccchhhHHHH
Q 048441 107 SFVCEICVESKSPNE-SFRIKGCSHSYCTDCIIKY 140 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~-~~~~~~CgH~fC~~Cl~~~ 140 (292)
...|.+|...|.... -.....||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 578999998876432 2345689999999997654
No 144
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=56.93 E-value=2.3 Score=32.31 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=0.0
Q ss_pred CCcCeEEeccCcceeeccccCccCC
Q 048441 231 RGCNIIICRCGTSFHYYSRADLSEL 255 (292)
Q Consensus 231 ~GCnhm~C~C~~~FC~~C~~~~~~~ 255 (292)
+.|.-+.-.|+|.|+..|..+|-..
T Consensus 75 ~~~~v~~~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 75 EECTVAWGVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp -------------------------
T ss_pred cccccccCCcCceEcHHHHHHHHHc
Confidence 4566666689999999999999653
No 145
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.33 E-value=8 Score=27.18 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=25.3
Q ss_pred CCCcccccccccCCCCC-ceeecCCCCccchhhHHH
Q 048441 105 DPSFVCEICVESKSPNE-SFRIKGCSHSYCTDCIIK 139 (292)
Q Consensus 105 ~~~~~C~IC~~~~~~~~-~~~~~~CgH~fC~~Cl~~ 139 (292)
.....|.+|...|.... -.....||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34679999998875432 233568999999999544
No 146
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=56.17 E-value=5.1 Score=30.48 Aligned_cols=30 Identities=13% Similarity=0.390 Sum_probs=23.4
Q ss_pred CeeecCCCCeeEEec----CCcCeEEe-ccCccee
Q 048441 216 KWKRCPNCGYYVEKF----RGCNIIIC-RCGTSFH 245 (292)
Q Consensus 216 ~~k~CP~C~~~iek~----~GCnhm~C-~C~~~FC 245 (292)
..+-||.|+.++.-. .+-+.+.| .|++.+=
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 357899999887643 56889999 6998763
No 147
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=53.69 E-value=7.9 Score=27.69 Aligned_cols=35 Identities=14% Similarity=0.385 Sum_probs=25.8
Q ss_pred CCcccccccccCCCCC-ceeecCCCCccchhhHHHH
Q 048441 106 PSFVCEICVESKSPNE-SFRIKGCSHSYCTDCIIKY 140 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~-~~~~~~CgH~fC~~Cl~~~ 140 (292)
....|.+|...+.... -.....||++||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 3578999998876432 2345689999999997654
No 148
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.79 E-value=6.7 Score=30.39 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=23.4
Q ss_pred CcccccccccCCC--CCceeecCCCCccchhhHH
Q 048441 107 SFVCEICVESKSP--NESFRIKGCSHSYCTDCII 138 (292)
Q Consensus 107 ~~~C~IC~~~~~~--~~~~~~~~CgH~fC~~Cl~ 138 (292)
.-.|.+|..++.. ..-.....|.|.+|..|-.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 5789999998832 2234457899999988843
No 149
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=50.43 E-value=4.2 Score=27.87 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=19.0
Q ss_pred CeeecCCCCeeEEecCCcCeEEe-ccCc
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIIC-RCGT 242 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C-~C~~ 242 (292)
..-.|+.|+..++...+ +.+.| .||+
T Consensus 27 v~Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EEEECCCCCCcceeCCC-CCccCCCCCc
Confidence 34579999999887754 55677 5776
No 150
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=50.11 E-value=6.1 Score=26.10 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=22.2
Q ss_pred cccccccccCCCCCceeecCCCCccchhhH
Q 048441 108 FVCEICVESKSPNESFRIKGCSHSYCTDCI 137 (292)
Q Consensus 108 ~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl 137 (292)
..|-.|...+.....+....|++.||.+|=
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH
T ss_pred CcccccCcccCCCccEECCccCcCcccchh
Confidence 358888877754434667789999999993
No 151
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.44 E-value=12 Score=25.89 Aligned_cols=56 Identities=18% Similarity=0.412 Sum_probs=37.2
Q ss_pred CCCcccccccccCC-CCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCCCCH
Q 048441 105 DPSFVCEICVESKS-PNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGVLEP 165 (292)
Q Consensus 105 ~~~~~C~IC~~~~~-~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~l~~ 165 (292)
.....| ||-.... ...++....|..+|...|+.-..... .......|| .|.....+
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~--~~~~~~~C~--~C~~~~~~ 66 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENA--VDIDIYHCP--DCEAVFGP 66 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHH--TTCSBBCCT--TTTTTSCS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccc--cCCCeEECC--CcccccCC
Confidence 446888 8987653 45677777899899999986433322 223568888 67765443
No 152
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=49.38 E-value=12 Score=24.26 Aligned_cols=26 Identities=31% Similarity=0.773 Sum_probs=18.9
Q ss_pred eeecCCCCeeEEecCCcCeEEec---cCcce
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICR---CGTSF 244 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~---C~~~F 244 (292)
.-.||.|+..++... ..++|. |+..|
T Consensus 10 iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 357999999988777 567774 65544
No 153
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=48.73 E-value=9.6 Score=27.85 Aligned_cols=17 Identities=12% Similarity=0.686 Sum_probs=14.3
Q ss_pred ccchhhHHHHHHHHHhc
Q 048441 131 SYCTDCIIKYVASKLQE 147 (292)
Q Consensus 131 ~fC~~Cl~~~i~~~i~~ 147 (292)
-||++|+..|+...-.+
T Consensus 42 GFCRNCLskWy~~aA~e 58 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEA 58 (105)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999987654
No 154
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=46.99 E-value=42 Score=23.00 Aligned_cols=35 Identities=20% Similarity=0.599 Sum_probs=26.4
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHH-HH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIK-YV 141 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~-~i 141 (292)
...|.+|-+........+.+.|.-.||..|++. +-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~ 65 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 65 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcC
Confidence 588999986532334456789999999999986 53
No 155
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.80 E-value=1.5 Score=29.85 Aligned_cols=35 Identities=29% Similarity=0.574 Sum_probs=23.2
Q ss_pred CeeecCCCCeeEEecCCcCeEEeccCcceeeccccC
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRAD 251 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~ 251 (292)
...+|-.|+..+...+ =.-+.|+||..||-.-.-+
T Consensus 14 ~~~rC~~C~kk~gL~~-~egf~CrCg~~FC~~HRy~ 48 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQ-QELGSCRCGYVFCMLHRLP 48 (67)
T ss_dssp CTTBCSSSCCBCCHHH-HHHHCCSSSCCCCTTTCST
T ss_pred cCCcchhhCCeecccc-cCceEecCCCEehhccCCc
Confidence 3467888988876431 0015789999999765543
No 156
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=46.70 E-value=8.5 Score=31.19 Aligned_cols=24 Identities=29% Similarity=0.724 Sum_probs=20.2
Q ss_pred eecCCCCeeEEecCCcCeEEe-ccCcc
Q 048441 218 KRCPNCGYYVEKFRGCNIIIC-RCGTS 243 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C-~C~~~ 243 (292)
-.|+.|+.++.+.+ ++|.| .||..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 47999999998866 99999 79864
No 157
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=46.39 E-value=13 Score=21.82 Aligned_cols=25 Identities=28% Similarity=0.696 Sum_probs=18.1
Q ss_pred ecCCCCee---EEecCCcCeEEe-ccCcc
Q 048441 219 RCPNCGYY---VEKFRGCNIIIC-RCGTS 243 (292)
Q Consensus 219 ~CP~C~~~---iek~~GCnhm~C-~C~~~ 243 (292)
.||.|+.+ +.+..+=-.+.| .||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 48888866 555567777888 68865
No 158
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=46.03 E-value=16 Score=25.94 Aligned_cols=35 Identities=17% Similarity=0.439 Sum_probs=25.4
Q ss_pred CCcccccccccCCCCC-ceeecCCCCccchhhHHHH
Q 048441 106 PSFVCEICVESKSPNE-SFRIKGCSHSYCTDCIIKY 140 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~-~~~~~~CgH~fC~~Cl~~~ 140 (292)
....|.+|...|.... -.....||.+||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3578999998876432 2335689999999997643
No 159
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=45.91 E-value=9.5 Score=27.83 Aligned_cols=17 Identities=24% Similarity=0.847 Sum_probs=14.1
Q ss_pred ccchhhHHHHHHHHHhc
Q 048441 131 SYCTDCIIKYVASKLQE 147 (292)
Q Consensus 131 ~fC~~Cl~~~i~~~i~~ 147 (292)
-||++|+..|+..+..+
T Consensus 41 GFCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATE 57 (104)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 39999999999987643
No 160
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=45.27 E-value=11 Score=24.57 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=15.2
Q ss_pred eeecCCCCe-eEEecCCcCeEEe-ccCc
Q 048441 217 WKRCPNCGY-YVEKFRGCNIIIC-RCGT 242 (292)
Q Consensus 217 ~k~CP~C~~-~iek~~GCnhm~C-~C~~ 242 (292)
...||.|+. .|....-=..+.| .||.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 357999976 4444433345666 4554
No 161
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=44.82 E-value=17 Score=24.01 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=25.4
Q ss_pred CeeecCCCCeeEEecCCcCeEEeccCcceeeccccCccCCCCCCCCCcccCCCCCCCCh
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSELYPYRPASRQKGFRLKSRDP 274 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~~~y~~~~~~~~~~~~~~~~ 274 (292)
..+.||+|+++.- ...|-.||.+.... |.-+++|.|.
T Consensus 5 ~mr~C~~CgvYTL-------------k~~CP~CG~~T~~~---------hParfSp~Dk 41 (60)
T 2apo_B 5 RMKKCPKCGLYTL-------------KEICPKCGEKTVIP---------KPPKFSLEDR 41 (60)
T ss_dssp CCEECTTTCCEES-------------SSBCSSSCSBCBCC---------CCCCCCTTCT
T ss_pred hceeCCCCCCEec-------------cccCcCCCCcCCCC---------CCCCCCCCcc
Confidence 4689999998875 25577788776543 3456666664
No 162
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=44.73 E-value=8.6 Score=27.18 Aligned_cols=18 Identities=28% Similarity=0.719 Sum_probs=15.0
Q ss_pred eeccCCCCCccCCCCchh
Q 048441 177 MFCAKCKVPWHTDMKCED 194 (292)
Q Consensus 177 ~~C~~C~~~~H~~~~C~~ 194 (292)
+.|..|+..-|....|.+
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~ 23 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPS 23 (83)
T ss_dssp -CCSSSCCSSSCGGGCGG
T ss_pred CCCCCCCCCCCccccCCC
Confidence 579999999999888875
No 163
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=44.68 E-value=11 Score=28.56 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=24.4
Q ss_pred CCCCcccccccccCCCCC-ceeecCCCCccchhhHHHHH
Q 048441 104 NDPSFVCEICVESKSPNE-SFRIKGCSHSYCTDCIIKYV 141 (292)
Q Consensus 104 ~~~~~~C~IC~~~~~~~~-~~~~~~CgH~fC~~Cl~~~i 141 (292)
+.....|..|-..|.... -.....||.+||..|....+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 344678999998775432 23456899999999977655
No 164
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=44.35 E-value=15 Score=25.09 Aligned_cols=25 Identities=32% Similarity=0.725 Sum_probs=14.1
Q ss_pred eecCCCCeeEEecCCcCeEEeccCcc
Q 048441 218 KRCPNCGYYVEKFRGCNIIICRCGTS 243 (292)
Q Consensus 218 k~CP~C~~~iek~~GCnhm~C~C~~~ 243 (292)
-.|| |+...--.+|=..-.|.||..
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~CG~~ 29 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCVCGRT 29 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEETTTEE
T ss_pred EECC-CCCEEEEcCCCcEEECCCCCe
Confidence 4566 666665555555555555543
No 165
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=44.14 E-value=8.6 Score=29.58 Aligned_cols=27 Identities=22% Similarity=0.748 Sum_probs=20.7
Q ss_pred eeecCCCCeeEEecCCcCeEEe-ccCcce
Q 048441 217 WKRCPNCGYYVEKFRGCNIIIC-RCGTSF 244 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C-~C~~~F 244 (292)
.-.||+|..-..-.+|= .+.| -|+++|
T Consensus 27 lP~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred CCCCCCCCCcceEecCC-eEECCcccccc
Confidence 46899999887766774 4788 688887
No 166
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=42.54 E-value=4 Score=30.23 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=18.9
Q ss_pred CCcCeEEeccCcceeeccccCccC
Q 048441 231 RGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 231 ~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
++|.-+.-.|+|.|+..|...|-.
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHT
T ss_pred ccceEeecccCcEECHHHHHHHHH
Confidence 355566668999999999999965
No 167
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=42.01 E-value=12 Score=29.95 Aligned_cols=34 Identities=24% Similarity=0.655 Sum_probs=25.5
Q ss_pred CcccccccccCCCCCceeec--CCCCccchhhHHHHHHH
Q 048441 107 SFVCEICVESKSPNESFRIK--GCSHSYCTDCIIKYVAS 143 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~--~CgH~fC~~Cl~~~i~~ 143 (292)
...|.||.+ +.+++... .|...||..||...+..
T Consensus 79 ~~yC~wC~~---Gg~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 79 QSYCTICCG---GREVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp BSSCTTTSC---CSEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred cceeeEecC---CCeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 578999996 34555544 68899999999887653
No 168
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=41.95 E-value=16 Score=24.85 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=23.6
Q ss_pred cccccccccCCCCC-ceeecCCCCccchhhHHH
Q 048441 108 FVCEICVESKSPNE-SFRIKGCSHSYCTDCIIK 139 (292)
Q Consensus 108 ~~C~IC~~~~~~~~-~~~~~~CgH~fC~~Cl~~ 139 (292)
..|.+|...+.... -.....||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 47999998775432 234568999999999754
No 169
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.59 E-value=33 Score=23.26 Aligned_cols=33 Identities=18% Similarity=0.447 Sum_probs=25.3
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKY 140 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~ 140 (292)
...| ||-.......++....|..+|...|+.-.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~ 48 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGIS 48 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCC
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccc
Confidence 5788 89887665567777789989999998543
No 170
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=40.49 E-value=15 Score=29.04 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=23.9
Q ss_pred CcccccccccCC--CCCceeecCCCCccchhhH
Q 048441 107 SFVCEICVESKS--PNESFRIKGCSHSYCTDCI 137 (292)
Q Consensus 107 ~~~C~IC~~~~~--~~~~~~~~~CgH~fC~~Cl 137 (292)
.-.|.+|..++. ...-..+..|.|.+|..|=
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 689999999863 2334456789999999986
No 171
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=40.38 E-value=6.2 Score=36.27 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=24.5
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
...||-|..... +-+.-.|||.||+.|...|-.
T Consensus 332 ~~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 332 FQLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SSBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHH
T ss_pred CCCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHh
Confidence 478999977663 223338999999999988854
No 172
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=40.15 E-value=15 Score=26.12 Aligned_cols=28 Identities=29% Similarity=0.661 Sum_probs=20.6
Q ss_pred eeecCCCCee------EEecCCcCeEEe-ccCcce
Q 048441 217 WKRCPNCGYY------VEKFRGCNIIIC-RCGTSF 244 (292)
Q Consensus 217 ~k~CP~C~~~------iek~~GCnhm~C-~C~~~F 244 (292)
.-.||.|+.. +.|..|=-++.| .||..|
T Consensus 23 ~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred eEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 4579999866 344567788888 688777
No 173
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=39.94 E-value=7.7 Score=28.49 Aligned_cols=35 Identities=17% Similarity=0.573 Sum_probs=22.4
Q ss_pred ecCCCCeeEEecC---CcCeEEe-ccC-------cceeeccccCcc
Q 048441 219 RCPNCGYYVEKFR---GCNIIIC-RCG-------TSFHYYSRADLS 253 (292)
Q Consensus 219 ~CP~C~~~iek~~---GCnhm~C-~C~-------~~FC~~C~~~~~ 253 (292)
-|++|..+|.-.+ =|+|+.| .|- ...|.+|..+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4888998884332 4777777 565 245777766554
No 174
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=38.46 E-value=21 Score=23.56 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=24.9
Q ss_pred CeeecCCCCeeEEecCCcCeEEeccCcceeeccccCccCCCCCCCCCcccCCCCCCCChh
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSELYPYRPASRQKGFRLKSRDPV 275 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~~~y~~~~~~~~~~~~~~~~~ 275 (292)
..+.||+|+++.-+ ..|-.||++... .|..+++|.|..
T Consensus 4 ~mr~C~~Cg~YTLk-------------~~CP~CG~~t~~---------ahParfSP~Dky 41 (60)
T 2aus_D 4 RIRKCPKCGRYTLK-------------ETCPVCGEKTKV---------AHPPRFSPEDPY 41 (60)
T ss_dssp CCEECTTTCCEESS-------------SBCTTTCSBCEE---------SSCCCCCSCCTT
T ss_pred cceECCCCCCEEcc-------------ccCcCCCCccCC---------CCCCCCCCCCch
Confidence 46889999988753 446667776553 344566777643
No 175
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=38.14 E-value=6.7 Score=34.75 Aligned_cols=34 Identities=24% Similarity=0.704 Sum_probs=25.2
Q ss_pred HhCCeeecCCCCeeEEecC-CcCeEEe-ccCcceee
Q 048441 213 VEMKWKRCPNCGYYVEKFR-GCNIIIC-RCGTSFHY 246 (292)
Q Consensus 213 ~~~~~k~CP~C~~~iek~~-GCnhm~C-~C~~~FC~ 246 (292)
.+..|.+||+|+..+-..+ .=|...| .|+|++=.
T Consensus 20 ~~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~ 55 (304)
T 2f9y_B 20 PEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRM 55 (304)
T ss_dssp ---CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCC
T ss_pred CHHHHHhhhhccchhhHHHHHHHhCCCCCCCCCCCC
Confidence 3467999999999998874 3377889 69988743
No 176
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=36.65 E-value=67 Score=24.94 Aligned_cols=50 Identities=18% Similarity=0.502 Sum_probs=35.0
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHH----HHhcCccccCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVAS----KLQESITTIGCPVTGCQG 161 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~----~i~~~~~~i~CP~~~C~~ 161 (292)
...|.+|.+ ..+++-.-.|...||..|+..-+.. .|........|| .|..
T Consensus 63 ~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~--~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCY--ICHP 116 (142)
T ss_dssp BCSCSSSCC---CSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCT--TTCC
T ss_pred CCeecccCC---CCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEee--cccC
Confidence 688999996 4566666788999999999977642 232223567888 4653
No 177
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.65 E-value=19 Score=33.00 Aligned_cols=32 Identities=25% Similarity=0.709 Sum_probs=26.0
Q ss_pred CcccccccccCCCCCceeec--CCCCccchhhHHHHH
Q 048441 107 SFVCEICVESKSPNESFRIK--GCSHSYCTDCIIKYV 141 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~--~CgH~fC~~Cl~~~i 141 (292)
...|.+|.+. .+++.+. .|...||+.|+...+
T Consensus 93 ~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 93 QSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp BCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHT
T ss_pred cccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhc
Confidence 6899999963 4556555 789999999999987
No 178
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=36.40 E-value=53 Score=25.11 Aligned_cols=50 Identities=20% Similarity=0.518 Sum_probs=34.0
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHH----HHHhcCccccCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVA----SKLQESITTIGCPVTGCQG 161 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~----~~i~~~~~~i~CP~~~C~~ 161 (292)
...|.||.+ ..+++-...|-..||..|+...+. ..+.+......|+ .|..
T Consensus 57 ~~~C~vC~d---GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~--~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAE---GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCY--ICHP 110 (129)
T ss_dssp BSSCTTTCC---CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCT--TTCC
T ss_pred CCcCeecCC---CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcC--CcCC
Confidence 467999996 345555567889999999998742 2332233568888 4653
No 179
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=34.36 E-value=8 Score=22.52 Aligned_cols=14 Identities=29% Similarity=0.816 Sum_probs=11.0
Q ss_pred CCcccccccccCCC
Q 048441 106 PSFVCEICVESKSP 119 (292)
Q Consensus 106 ~~~~C~IC~~~~~~ 119 (292)
+.|.||+|+.++..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 36999999987654
No 180
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=33.65 E-value=12 Score=24.80 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=11.3
Q ss_pred CCeeecCCCCeeEE
Q 048441 215 MKWKRCPNCGYYVE 228 (292)
Q Consensus 215 ~~~k~CP~C~~~ie 228 (292)
.....||+|+.+..
T Consensus 28 p~l~~c~~cGe~~~ 41 (60)
T 3v2d_5 28 PTLVPCPECKAMKP 41 (60)
T ss_dssp CCCEECTTTCCEEC
T ss_pred CceeECCCCCCeec
Confidence 45678999999876
No 181
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=30.89 E-value=11 Score=32.11 Aligned_cols=33 Identities=6% Similarity=-0.037 Sum_probs=25.3
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
.-.||-|...+. +-++=.|||.||..|...|-.
T Consensus 208 ~~~c~i~~~~~~-----dPv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 208 YLCGKISFELMR-----EPCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp TTBCTTTCSBCS-----SEEECSSCCEEETTHHHHHHH
T ss_pred ccCCcCcCCHhc-----CCeECCCCCEECHHHHHHHHH
Confidence 357999988875 445557999999999887753
No 182
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=30.86 E-value=34 Score=21.88 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=7.7
Q ss_pred eeecCCCCee
Q 048441 217 WKRCPNCGYY 226 (292)
Q Consensus 217 ~k~CP~C~~~ 226 (292)
..+||+|+..
T Consensus 15 ~~~Cp~Cg~~ 24 (57)
T 1qyp_A 15 KITCPKCGND 24 (57)
T ss_dssp ECCCTTTCCS
T ss_pred EeECCCCCCC
Confidence 3679999974
No 183
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=30.68 E-value=23 Score=29.47 Aligned_cols=34 Identities=21% Similarity=0.554 Sum_probs=25.1
Q ss_pred CcccccccccCCCCC-ceeecCCCCccchhhHHHH
Q 048441 107 SFVCEICVESKSPNE-SFRIKGCSHSYCTDCIIKY 140 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~-~~~~~~CgH~fC~~Cl~~~ 140 (292)
...|.+|...|.... -..+..||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 469999998775432 2345789999999997654
No 184
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=30.35 E-value=26 Score=29.61 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=14.7
Q ss_pred eecCCCCe----eEEecCCcCeEEe-ccCc
Q 048441 218 KRCPNCGY----YVEKFRGCNIIIC-RCGT 242 (292)
Q Consensus 218 k~CP~C~~----~iek~~GCnhm~C-~C~~ 242 (292)
.+||.|+- .+- ..| ++.| +||+
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCYVCEK 41 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEETTTCC
T ss_pred CcCCCCCCCCCceEe-CCC--CeecccCCC
Confidence 58999987 344 345 4667 5665
No 185
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=30.25 E-value=1.6e+02 Score=21.42 Aligned_cols=78 Identities=19% Similarity=0.518 Sum_probs=47.9
Q ss_pred CCcccccccccC------CCCCceeecCCCCccchhhHHH--HHHHHHhcCccccCCCCC-CCCCCCCHHHHHhhCCCCc
Q 048441 106 PSFVCEICVESK------SPNESFRIKGCSHSYCTDCIIK--YVASKLQESITTIGCPVT-GCQGVLEPEYCRNILPQQV 176 (292)
Q Consensus 106 ~~~~C~IC~~~~------~~~~~~~~~~CgH~fC~~Cl~~--~i~~~i~~~~~~i~CP~~-~C~~~l~~~~i~~~l~~~~ 176 (292)
+...|.+|+..- ...+++....|+..|...|+.- -+...+.. ....||.. .|..--... .-...+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~--~~W~C~~C~~C~vC~~~~----~~~~~l 77 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKA--LRWQCIECKTCSSCRDQG----KNADNM 77 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHT--SCCCCTTTCCBTTTCCCC----CTTCCC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhc--cccccccCCccccccCcC----CCccce
Confidence 367899998763 2346777789999999999952 33444443 35678853 222111000 002345
Q ss_pred eeccCCCCCccCC
Q 048441 177 MFCAKCKVPWHTD 189 (292)
Q Consensus 177 ~~C~~C~~~~H~~ 189 (292)
++|..|...+|..
T Consensus 78 l~Cd~C~~~yH~~ 90 (112)
T 3v43_A 78 LFCDSCDRGFHME 90 (112)
T ss_dssp EECTTTCCEECGG
T ss_pred EEcCCCCCeeecc
Confidence 8899999999953
No 186
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=29.87 E-value=18 Score=23.83 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=11.1
Q ss_pred CCeeecCCCCeeEE
Q 048441 215 MKWKRCPNCGYYVE 228 (292)
Q Consensus 215 ~~~k~CP~C~~~ie 228 (292)
.....||+|+.+..
T Consensus 28 p~l~~c~~cG~~~~ 41 (60)
T 2zjr_Z 28 PNLTECPQCHGKKL 41 (60)
T ss_dssp CCCEECTTTCCEEC
T ss_pred CCceECCCCCCEeC
Confidence 45678999999964
No 187
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=29.69 E-value=16 Score=24.09 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=28.2
Q ss_pred eeecCCCCeeEEecCCcCeEEeccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIICRCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 254 (292)
.-.|+.|+..- ..+|+-|.=-.|...||-+||..+.-
T Consensus 9 ~~~C~iC~KTK-FADG~Gh~C~yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 9 APTCGICHKTK-FADGCGHNCSYCQTKFCARCGGRVSL 45 (62)
T ss_dssp CCCCSSSSCSC-CCSSCCEEBTTTCCEECTTSEEEEES
T ss_pred cchhhhhccce-eccCCCccccccCCeeecccCCEeee
Confidence 35688887653 46798886338999999999998763
No 188
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.73 E-value=30 Score=22.54 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=24.7
Q ss_pred CCcccccccccCC-CCCceeecCCCCccchhhHHH
Q 048441 106 PSFVCEICVESKS-PNESFRIKGCSHSYCTDCIIK 139 (292)
Q Consensus 106 ~~~~C~IC~~~~~-~~~~~~~~~CgH~fC~~Cl~~ 139 (292)
+...|+||..... ...++....|...|...|+.-
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCc
Confidence 3688999997653 345666677888888888743
No 189
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=28.53 E-value=18 Score=26.83 Aligned_cols=71 Identities=20% Similarity=0.484 Sum_probs=43.5
Q ss_pred ccccccccCC-------CCCceeecCCCCccchhhHHHHHH--HHHhcCccccCCCCC----CCCCCCCHHHHHhhCCCC
Q 048441 109 VCEICVESKS-------PNESFRIKGCSHSYCTDCIIKYVA--SKLQESITTIGCPVT----GCQGVLEPEYCRNILPQQ 175 (292)
Q Consensus 109 ~C~IC~~~~~-------~~~~~~~~~CgH~fC~~Cl~~~i~--~~i~~~~~~i~CP~~----~C~~~l~~~~i~~~l~~~ 175 (292)
.|.+|+.... ..+++....|+..|...|+.-... ..+.. ....||.. .|+..-. ...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~--~~W~C~~C~~C~~C~~~~~--------~~~ 72 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKT--YKWQCIECKSCILCGTSEN--------DDQ 72 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHH--TTCCCGGGCCCTTTTCCTT--------TTT
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCC--CccCccccCccCcccccCC--------CCc
Confidence 5888887541 235666778998888888764332 22333 34566642 2333211 234
Q ss_pred ceeccCCCCCccCC
Q 048441 176 VMFCAKCKVPWHTD 189 (292)
Q Consensus 176 ~~~C~~C~~~~H~~ 189 (292)
.+.|..|...||..
T Consensus 73 ll~Cd~C~~~yH~~ 86 (114)
T 2kwj_A 73 LLFCDDCDRGYHMY 86 (114)
T ss_dssp EEECSSSCCEEETT
T ss_pred eEEcCCCCcccccc
Confidence 58999999999964
No 190
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.36 E-value=31 Score=28.86 Aligned_cols=34 Identities=21% Similarity=0.535 Sum_probs=25.2
Q ss_pred CcccccccccCCCCC-ceeecCCCCccchhhHHHH
Q 048441 107 SFVCEICVESKSPNE-SFRIKGCSHSYCTDCIIKY 140 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~-~~~~~~CgH~fC~~Cl~~~ 140 (292)
...|.+|...+.... -..+..||++||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 458999998876432 2445789999999997653
No 191
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=27.33 E-value=33 Score=23.19 Aligned_cols=33 Identities=15% Similarity=0.420 Sum_probs=25.3
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCII 138 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~ 138 (292)
+...|.||........++..-.|.-.|-..|+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~ 49 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG 49 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHT
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCC
Confidence 367899999876555677767888888888875
No 192
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.06 E-value=33 Score=30.30 Aligned_cols=34 Identities=21% Similarity=0.522 Sum_probs=25.7
Q ss_pred eecCCCCee----EEe----cCCcCeEEe-ccCcce------eeccccC
Q 048441 218 KRCPNCGYY----VEK----FRGCNIIIC-RCGTSF------HYYSRAD 251 (292)
Q Consensus 218 k~CP~C~~~----iek----~~GCnhm~C-~C~~~F------C~~C~~~ 251 (292)
..||-|+.. +-+ .+|=.++.| .|+++| |-.|+..
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 479999964 223 468889999 799998 6678876
No 193
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.95 E-value=15 Score=24.50 Aligned_cols=28 Identities=25% Similarity=0.561 Sum_probs=20.9
Q ss_pred CeeecCCCCeeEEecCCcCeEEe-ccCcce
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIIC-RCGTSF 244 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 244 (292)
..-.|..|+..++...+ .-|.| .||+..
T Consensus 20 v~Y~C~~Cg~~~~l~~~-~~iRC~~CG~RI 48 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAK-EVIRCRECGHRV 48 (63)
T ss_dssp CCCBCSSSCCBCCCCSS-SCCCCSSSCCCC
T ss_pred eEEECCCCCCeeecCCC-CceECCCCCcEE
Confidence 44679999999887755 66888 688754
No 194
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=26.60 E-value=65 Score=27.62 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=23.0
Q ss_pred CeeecCCCCeeEEecCCcCeEEe-ccCcc
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIIC-RCGTS 243 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~ 243 (292)
..+.||.|+...+...+=..+.| .|+..
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCCE
Confidence 35899999999988877778899 68753
No 195
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.14 E-value=49 Score=20.35 Aligned_cols=31 Identities=13% Similarity=0.486 Sum_probs=23.0
Q ss_pred ccccccccCCCCCceeecCCCCccchhhHHH
Q 048441 109 VCEICVESKSPNESFRIKGCSHSYCTDCIIK 139 (292)
Q Consensus 109 ~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~ 139 (292)
.|.||...-...+++....|...|...|+.-
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCC
Confidence 4888987655556676678888888888854
No 196
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.00 E-value=20 Score=22.82 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=14.7
Q ss_pred CeeecCCCCeeEEecCCcCeEEe-ccCcc
Q 048441 216 KWKRCPNCGYYVEKFRGCNIIIC-RCGTS 243 (292)
Q Consensus 216 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~ 243 (292)
.-+.||.|+..+ +=.--.| +||+.
T Consensus 13 ~k~iCpkC~a~~----~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATN----PWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEE----CTTCSSCSSSSSC
T ss_pred CCccCCCCCCcC----CCCceecCCCCCc
Confidence 557899999983 2223445 46554
No 197
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=25.60 E-value=78 Score=20.94 Aligned_cols=48 Identities=21% Similarity=0.489 Sum_probs=32.2
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCCCCCCC
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVTGCQGV 162 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~~C~~~ 162 (292)
...|.||.+. .+++....|...|...|+.--+.. +- .....|| .|...
T Consensus 12 ~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~-~P--~g~W~C~--~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTS-RP--GTGLRCR--SCSGD 59 (66)
T ss_dssp TCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCC-CC--SSSCCCT--TTTTC
T ss_pred CCCcCCCCCC---CeEEECCCCCCceecccCCCccCc-CC--CCCEECc--cccCC
Confidence 5679999853 456667789999999998654432 11 1346788 57643
No 198
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=25.45 E-value=15 Score=32.13 Aligned_cols=34 Identities=18% Similarity=0.447 Sum_probs=24.9
Q ss_pred HhCCeeecCCCCeeEEecC-CcCeEEe-ccCcceee
Q 048441 213 VEMKWKRCPNCGYYVEKFR-GCNIIIC-RCGTSFHY 246 (292)
Q Consensus 213 ~~~~~k~CP~C~~~iek~~-GCnhm~C-~C~~~FC~ 246 (292)
.+..|.+||+|+..+-... .=|.-.| .|++++=+
T Consensus 26 ~~~l~~kc~~~~~~~y~~~l~~~~~v~p~~~~~~r~ 61 (285)
T 2f9i_B 26 PAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIAL 61 (285)
T ss_dssp CCSSEEECTTTCCEEEHHHHHHTTTBCTTTCCBCCC
T ss_pred ChHHHHhhHhhCCccchhhhHHhcCcCCCCCCCCCC
Confidence 3467999999999998763 4466777 67776533
No 199
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=24.84 E-value=69 Score=27.00 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=19.0
Q ss_pred eeccCCCCCccCCCCchhHHHhcccchhHHHHHHHHHhCCeeecCCCCeeE
Q 048441 177 MFCAKCKVPWHTDMKCEDFQNLNENENDDIKLKKLAVEMKWKRCPNCGYYV 227 (292)
Q Consensus 177 ~~C~~C~~~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~i 227 (292)
..|..|+..+|.. |- .++........||.|+...
T Consensus 194 ~~C~~C~~~~H~~--C~---------------~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 194 QSCETCGIRMHLP--CV---------------AKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp EECSSSCCEECHH--HH---------------HHHTTTCSSCBCTTTCCBC
T ss_pred cccCccChHHHHH--HH---------------HHHHHhCCCCCCCCCCCCC
Confidence 5666677666643 32 2333333446788876643
No 200
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=24.09 E-value=44 Score=23.44 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=25.9
Q ss_pred cccCCCCCCCCCCCCHHH-HHhhCCCCc-------------------eeccCCCCCccC
Q 048441 150 TTIGCPVTGCQGVLEPEY-CRNILPQQV-------------------MFCAKCKVPWHT 188 (292)
Q Consensus 150 ~~i~CP~~~C~~~l~~~~-i~~~l~~~~-------------------~~C~~C~~~~H~ 188 (292)
...+|| -|+..|..++ |.+.|.-+. ..|..|+..+-+
T Consensus 7 ~~~~~P--lCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG 63 (95)
T 2k5c_A 7 HMAKCP--ICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYG 63 (95)
T ss_dssp -CEECS--SSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEET
T ss_pred ccccCC--cCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhc
Confidence 346899 7999999854 555555432 789999987644
No 201
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=24.02 E-value=56 Score=21.42 Aligned_cols=34 Identities=18% Similarity=0.548 Sum_probs=24.0
Q ss_pred CcccccccccCCCCCceeecCCCCccch-hhHHHH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCT-DCIIKY 140 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~-~Cl~~~ 140 (292)
...|.||..............|+-.||. .|.+.|
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 5789999852211223566789999997 898865
No 202
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.22 E-value=73 Score=21.33 Aligned_cols=37 Identities=19% Similarity=0.486 Sum_probs=26.5
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHH
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVA 142 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~ 142 (292)
+=|.|..|-..+.....+.+..=+..||..|..+.+.
T Consensus 40 ~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 40 ECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp TSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred ccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 3589999998876444454335678999999977664
No 203
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=23.21 E-value=54 Score=21.69 Aligned_cols=35 Identities=17% Similarity=0.505 Sum_probs=25.0
Q ss_pred CCcccccccccCCCC-Cceeec-CCCCccchhhHHHH
Q 048441 106 PSFVCEICVESKSPN-ESFRIK-GCSHSYCTDCIIKY 140 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~-~~~~~~-~CgH~fC~~Cl~~~ 140 (292)
+...|++|..+.... .++... .|.-.|...|+.--
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt 43 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMT 43 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCC
Confidence 478999999986543 455666 78888888887544
No 204
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.88 E-value=63 Score=21.05 Aligned_cols=34 Identities=24% Similarity=0.596 Sum_probs=25.2
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVA 142 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~ 142 (292)
=|.|..|-..+.... +.. .=+..||..|+.+.+.
T Consensus 33 CF~C~~C~~~L~~~~-~~~-~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQH-FYA-VERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTSC-EEE-SSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcCc-CEe-eCCeEECHHHHHHHHc
Confidence 589999998885443 332 4678999999987764
No 205
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=22.45 E-value=42 Score=24.48 Aligned_cols=73 Identities=22% Similarity=0.482 Sum_probs=47.4
Q ss_pred CCcccccccccCCCCCceeecCCCCccchhhHHHHHHHHHhcCccccCCCCC----CCCCCCCHHHHHhhCCCCceeccC
Q 048441 106 PSFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVASKLQESITTIGCPVT----GCQGVLEPEYCRNILPQQVMFCAK 181 (292)
Q Consensus 106 ~~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~~~i~~~~~~i~CP~~----~C~~~l~~~~i~~~l~~~~~~C~~ 181 (292)
+...|.||.+.-...+++....|+..|...|+.-.+.. +. .....||.- .|+..-. ....+.|..
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~-~~--~~~W~C~~C~~C~~C~~~~~--------~~~ll~Cd~ 74 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP-LK--RAGWQCPECKVCQNCKQSGE--------DSKMLVCDT 74 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT-TT--STTCCCTTTCCCTTTCCCSC--------CTTEEECSS
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccc-cc--ccCccCCcCCcccccCccCC--------CCCeeECCC
Confidence 36789999986555556777789988988898754321 11 245677742 2332211 124588999
Q ss_pred CCCCccCC
Q 048441 182 CKVPWHTD 189 (292)
Q Consensus 182 C~~~~H~~ 189 (292)
|...||..
T Consensus 75 C~~~yH~~ 82 (111)
T 2ysm_A 75 CDKGYHTF 82 (111)
T ss_dssp SCCEEEGG
T ss_pred CCcHHhHH
Confidence 99999964
No 206
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.13 E-value=19 Score=31.18 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=27.0
Q ss_pred eeecCCCCeeEEecCCcCeEEe-ccCcceeeccccCccC
Q 048441 217 WKRCPNCGYYVEKFRGCNIIIC-RCGTSFHYYSRADLSE 254 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 254 (292)
.-.||-|..++. +-|+- .|||.||-.|...|-.
T Consensus 181 el~CPIcl~~f~-----DPVts~~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 181 ELTCPITCKPYE-----APLISRKCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp CSBCTTTSSBCS-----SEEEESSSCCEEEHHHHHHHST
T ss_pred eeECcCccCccc-----CCeeeCCCCCcccHHHHHHHHH
Confidence 468999999885 56888 7999999999887643
No 207
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=21.64 E-value=64 Score=25.89 Aligned_cols=25 Identities=32% Similarity=0.760 Sum_probs=16.5
Q ss_pred eeecCCCCeeEEecCCcCeEEe-ccCc
Q 048441 217 WKRCPNCGYYVEKFRGCNIIIC-RCGT 242 (292)
Q Consensus 217 ~k~CP~C~~~iek~~GCnhm~C-~C~~ 242 (292)
+..||+|...|...++ ....| +|+.
T Consensus 42 Y~ACp~CnKKV~~~~~-g~~~CekC~~ 67 (172)
T 3u50_C 42 YYRCTCQGKSVLKYHG-DSFFCESCQQ 67 (172)
T ss_dssp EEECTTSCCCEEEETT-TEEEETTTTE
T ss_pred ehhchhhCCEeeeCCC-CeEECCCCCC
Confidence 5789999999974432 34555 5554
No 208
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=21.46 E-value=49 Score=24.13 Aligned_cols=32 Identities=13% Similarity=0.481 Sum_probs=23.3
Q ss_pred CcccccccccCCC-CCceeec-CCCCccchhhHH
Q 048441 107 SFVCEICVESKSP-NESFRIK-GCSHSYCTDCII 138 (292)
Q Consensus 107 ~~~C~IC~~~~~~-~~~~~~~-~CgH~fC~~Cl~ 138 (292)
...|+||...... ..++..- .|..+|...|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg 36 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTG 36 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCC
Confidence 6889999987643 3455554 688888888875
No 209
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.20 E-value=78 Score=20.45 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=24.9
Q ss_pred CcccccccccCCCCCceeecCCCCccchhhHHHHHH
Q 048441 107 SFVCEICVESKSPNESFRIKGCSHSYCTDCIIKYVA 142 (292)
Q Consensus 107 ~~~C~IC~~~~~~~~~~~~~~CgH~fC~~Cl~~~i~ 142 (292)
=|.|..|-..+.....+. .-+..||..|..+.+.
T Consensus 31 CF~C~~C~~~L~~~~f~~--~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVK--NAGRHLCRPCHNREKA 64 (70)
T ss_dssp TSBCSSSCCBCSSSCCEE--ETTEEECHHHHHHHHC
T ss_pred CCEeCCCCCcCCCCccEe--ECCeEECHHHhhhhcC
Confidence 588999988776554332 4678999999877654
No 210
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=21.04 E-value=73 Score=22.16 Aligned_cols=29 Identities=38% Similarity=0.990 Sum_probs=19.2
Q ss_pred eeecCCCCeeEEec---------CCcCeEEe-ccCccee
Q 048441 217 WKRCPNCGYYVEKF---------RGCNIIIC-RCGTSFH 245 (292)
Q Consensus 217 ~k~CP~C~~~iek~---------~GCnhm~C-~C~~~FC 245 (292)
|-.|-.|+-.|.|. .||..++| -|+..|=
T Consensus 10 ~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~ 48 (79)
T 1wjv_A 10 FFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFW 48 (79)
T ss_dssp EEEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEE
T ss_pred EEEcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeC
Confidence 56788888888774 35556666 4666553
No 211
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.86 E-value=49 Score=22.87 Aligned_cols=31 Identities=32% Similarity=0.716 Sum_probs=23.3
Q ss_pred CcccccccccCCC--CCceeecCCCCccchhhH
Q 048441 107 SFVCEICVESKSP--NESFRIKGCSHSYCTDCI 137 (292)
Q Consensus 107 ~~~C~IC~~~~~~--~~~~~~~~CgH~fC~~Cl 137 (292)
.-.|..|...+-. ........|.|..|++|-
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred ccchhhhCccccccccCCCcCcccChhhccccc
Confidence 6889999987742 233446789999999983
Done!