Query 048443
Match_columns 486
No_of_seqs 415 out of 3616
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:34:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.7E-47 1.5E-51 416.3 29.2 414 3-429 160-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.4E-43 7.3E-48 387.0 27.4 413 4-429 137-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 9.2E-40 2E-44 310.2 3.3 387 1-431 47-458 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.3E-35 7E-40 279.4 5.8 340 9-389 80-429 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.9E-32 6.3E-37 248.7 -7.7 364 39-425 105-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 2.7E-31 5.9E-36 254.6 -3.6 358 24-432 6-382 (1255)
7 KOG4237 Extracellular matrix p 99.9 1.1E-29 2.3E-34 231.6 -0.1 369 1-386 38-498 (498)
8 KOG0444 Cytoskeletal regulator 99.9 4E-30 8.7E-35 246.6 -3.4 353 7-387 7-373 (1255)
9 KOG0618 Serine/threonine phosp 99.9 7E-29 1.5E-33 248.3 -4.7 377 27-425 47-489 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 1.9E-29 4.1E-34 230.4 -10.0 332 26-402 138-541 (565)
11 PLN03210 Resistant to P. syrin 99.9 1.9E-21 4E-26 215.4 25.8 320 35-387 575-904 (1153)
12 KOG0618 Serine/threonine phosp 99.9 5.5E-26 1.2E-30 227.6 -9.1 357 43-424 40-464 (1081)
13 PRK15387 E3 ubiquitin-protein 99.9 7.6E-22 1.6E-26 203.7 17.9 248 33-388 210-457 (788)
14 PLN03210 Resistant to P. syrin 99.9 3.1E-21 6.8E-26 213.6 22.5 296 64-402 550-859 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 2.3E-21 5E-26 200.2 17.2 253 48-407 201-463 (788)
16 PRK15370 E3 ubiquitin-protein 99.8 2.1E-20 4.6E-25 194.3 12.0 247 48-389 178-428 (754)
17 KOG4237 Extracellular matrix p 99.8 2.4E-22 5.2E-27 183.9 -2.4 282 39-387 60-357 (498)
18 PRK15370 E3 ubiquitin-protein 99.8 2.7E-19 5.9E-24 186.0 13.8 236 73-402 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 7.7E-20 1.7E-24 176.3 0.5 204 52-259 2-231 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.4E-19 9.6E-24 171.0 0.5 265 39-387 14-318 (319)
21 KOG0617 Ras suppressor protein 99.7 9.4E-19 2E-23 142.7 -4.4 155 45-214 30-186 (264)
22 KOG0617 Ras suppressor protein 99.7 1E-18 2.3E-23 142.4 -4.2 162 70-247 31-194 (264)
23 PLN03150 hypothetical protein; 99.5 1.8E-14 3.9E-19 149.5 8.9 108 329-436 419-539 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 8E-15 1.7E-19 140.9 -2.6 193 98-386 74-270 (722)
25 KOG1259 Nischarin, modulator o 99.4 6.9E-14 1.5E-18 124.4 0.4 209 6-240 181-414 (490)
26 PLN03150 hypothetical protein; 99.3 1.3E-11 2.9E-16 128.2 12.2 105 227-386 420-525 (623)
27 KOG0532 Leucine-rich repeat (L 99.3 1.6E-13 3.5E-18 132.1 -4.0 175 46-238 73-247 (722)
28 COG4886 Leucine-rich repeat (L 99.2 1.2E-11 2.7E-16 122.7 6.7 190 52-260 97-288 (394)
29 PF14580 LRR_9: Leucine-rich r 99.2 1E-11 2.2E-16 106.1 3.5 122 129-255 20-146 (175)
30 COG4886 Leucine-rich repeat (L 99.2 3.6E-11 7.7E-16 119.4 7.5 175 48-240 116-292 (394)
31 PF14580 LRR_9: Leucine-rich r 99.1 5E-11 1.1E-15 101.9 5.4 125 98-233 18-148 (175)
32 KOG3207 Beta-tubulin folding c 99.1 1E-11 2.3E-16 116.2 0.4 204 45-258 118-335 (505)
33 KOG3207 Beta-tubulin folding c 99.1 6.7E-12 1.4E-16 117.5 -1.6 162 69-239 118-285 (505)
34 KOG1909 Ran GTPase-activating 99.1 4.1E-12 8.9E-17 115.7 -4.8 196 43-258 25-250 (382)
35 KOG1259 Nischarin, modulator o 99.0 6.4E-11 1.4E-15 105.8 0.6 136 66-216 278-414 (490)
36 KOG4658 Apoptotic ATPase [Sign 98.9 6.8E-10 1.5E-14 118.2 5.3 293 48-407 545-847 (889)
37 PF13855 LRR_8: Leucine rich r 98.9 8.5E-10 1.8E-14 77.5 3.1 60 328-387 1-60 (61)
38 KOG0531 Protein phosphatase 1, 98.9 2.2E-10 4.9E-15 114.0 -0.9 193 46-258 70-264 (414)
39 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.4E-14 76.9 2.8 61 48-111 1-61 (61)
40 KOG1909 Ran GTPase-activating 98.8 2.9E-10 6.4E-15 103.8 -2.7 188 44-237 88-310 (382)
41 KOG0531 Protein phosphatase 1, 98.8 1.3E-09 2.8E-14 108.6 0.8 180 40-239 87-269 (414)
42 KOG1859 Leucine-rich repeat pr 98.6 5.6E-10 1.2E-14 110.9 -9.2 178 41-238 102-292 (1096)
43 KOG1859 Leucine-rich repeat pr 98.5 2.1E-09 4.6E-14 106.9 -6.8 127 127-260 163-290 (1096)
44 KOG4658 Apoptotic ATPase [Sign 98.5 1.5E-07 3.3E-12 100.6 5.5 78 179-257 573-650 (889)
45 KOG2982 Uncharacterized conser 98.1 6.9E-07 1.5E-11 80.3 1.3 61 327-387 198-260 (418)
46 KOG1644 U2-associated snRNP A' 98.1 4.7E-06 1E-10 71.0 5.7 103 153-258 43-149 (233)
47 KOG4579 Leucine-rich repeat (L 98.1 5E-08 1.1E-12 77.5 -5.8 59 153-214 78-136 (177)
48 KOG2120 SCF ubiquitin ligase, 98.1 1.3E-07 2.9E-12 84.8 -3.9 215 154-398 138-372 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.1 1.6E-07 3.4E-12 83.3 -4.3 175 44-238 26-227 (388)
50 PF12799 LRR_4: Leucine Rich r 98.0 2.6E-06 5.7E-11 54.7 1.8 36 329-365 2-37 (44)
51 KOG1644 U2-associated snRNP A' 98.0 1E-05 2.2E-10 69.0 5.4 104 49-161 43-149 (233)
52 PF12799 LRR_4: Leucine Rich r 98.0 4.5E-06 9.8E-11 53.6 2.5 40 352-392 1-40 (44)
53 KOG2120 SCF ubiquitin ligase, 98.0 2.4E-07 5.1E-12 83.3 -5.0 177 49-236 186-374 (419)
54 KOG4579 Leucine-rich repeat (L 98.0 3.8E-07 8.2E-12 72.6 -3.4 106 129-238 28-136 (177)
55 PRK15386 type III secretion pr 98.0 4.1E-05 8.8E-10 73.9 9.3 34 327-363 155-188 (426)
56 KOG2982 Uncharacterized conser 97.9 1.4E-06 3.1E-11 78.4 -1.3 37 330-366 226-263 (418)
57 PRK15386 type III secretion pr 97.8 4.6E-05 1E-09 73.6 7.0 136 44-212 48-188 (426)
58 COG5238 RNA1 Ran GTPase-activa 97.6 1.9E-05 4E-10 70.5 0.7 60 328-387 214-283 (388)
59 PF13306 LRR_5: Leucine rich r 97.6 0.00023 5E-09 58.3 7.3 80 127-210 11-90 (129)
60 KOG2739 Leucine-rich acidic nu 97.5 8.4E-05 1.8E-09 66.2 3.7 124 27-159 20-150 (260)
61 PF13306 LRR_5: Leucine rich r 97.5 0.00059 1.3E-08 55.8 8.1 124 145-278 5-128 (129)
62 KOG3665 ZYG-1-like serine/thre 97.3 0.00016 3.5E-09 75.8 2.9 134 98-239 121-264 (699)
63 KOG3665 ZYG-1-like serine/thre 97.2 0.00015 3.3E-09 76.0 2.5 75 327-403 172-264 (699)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00056 1.2E-08 61.1 2.6 90 144-238 35-129 (260)
65 KOG2123 Uncharacterized conser 96.5 0.00026 5.6E-09 63.6 -2.6 82 311-395 23-123 (388)
66 KOG2123 Uncharacterized conser 95.8 0.00043 9.4E-09 62.2 -4.7 57 128-189 19-75 (388)
67 PF00560 LRR_1: Leucine Rich R 95.4 0.0057 1.2E-07 32.6 0.5 12 354-365 2-13 (22)
68 KOG4341 F-box protein containi 95.3 0.00082 1.8E-08 63.8 -5.0 61 327-387 371-437 (483)
69 PF00560 LRR_1: Leucine Rich R 95.2 0.011 2.4E-07 31.4 1.2 12 203-214 2-13 (22)
70 PF13504 LRR_7: Leucine rich r 94.9 0.015 3.3E-07 28.7 1.1 14 100-113 2-15 (17)
71 KOG4341 F-box protein containi 93.1 0.0044 9.5E-08 59.1 -5.2 61 327-387 345-412 (483)
72 KOG1947 Leucine rich repeat pr 93.0 0.014 3.1E-07 59.4 -2.2 59 200-258 242-304 (482)
73 smart00369 LRR_TYP Leucine-ric 92.2 0.12 2.5E-06 28.7 1.9 21 352-372 2-22 (26)
74 smart00370 LRR Leucine-rich re 92.2 0.12 2.5E-06 28.7 1.9 21 352-372 2-22 (26)
75 KOG4308 LRR-containing protein 91.6 0.0017 3.7E-08 65.2 -10.6 188 49-239 88-304 (478)
76 KOG1947 Leucine rich repeat pr 90.4 0.028 6.1E-07 57.3 -3.4 62 127-189 242-307 (482)
77 KOG0473 Leucine-rich repeat pr 90.3 0.0065 1.4E-07 53.4 -6.7 84 127-214 41-124 (326)
78 smart00365 LRR_SD22 Leucine-ri 90.0 0.22 4.9E-06 27.6 1.6 17 376-392 2-18 (26)
79 smart00369 LRR_TYP Leucine-ric 90.0 0.27 5.9E-06 27.2 2.0 21 48-68 2-22 (26)
80 smart00370 LRR Leucine-rich re 90.0 0.27 5.9E-06 27.2 2.0 21 48-68 2-22 (26)
81 KOG4308 LRR-containing protein 89.9 0.0022 4.7E-08 64.5 -11.6 181 74-259 89-300 (478)
82 KOG0473 Leucine-rich repeat pr 89.1 0.013 2.9E-07 51.5 -5.7 82 98-189 41-123 (326)
83 PF13516 LRR_6: Leucine Rich r 87.7 0.19 4.2E-06 27.1 0.3 13 153-165 3-15 (24)
84 smart00364 LRR_BAC Leucine-ric 83.2 0.86 1.9E-05 25.2 1.5 18 99-116 2-19 (26)
85 KOG3864 Uncharacterized conser 80.1 0.18 3.9E-06 43.7 -2.9 36 128-163 101-136 (221)
86 KOG3864 Uncharacterized conser 77.2 0.59 1.3E-05 40.6 -0.6 36 327-362 150-186 (221)
87 smart00368 LRR_RI Leucine rich 72.3 3.3 7.2E-05 23.3 1.8 14 99-112 2-15 (28)
88 KOG4242 Predicted myosin-I-bin 61.7 24 0.00052 35.1 6.3 58 330-387 415-479 (553)
89 KOG3763 mRNA export factor TAP 61.2 4.5 9.7E-05 40.8 1.5 59 327-387 217-281 (585)
90 PF02009 Rifin_STEVOR: Rifin/s 61.1 6 0.00013 37.1 2.2 26 455-481 268-293 (299)
91 PF01102 Glycophorin_A: Glycop 59.8 6.1 0.00013 31.5 1.7 13 447-459 67-79 (122)
92 TIGR00864 PCC polycystin catio 58.3 4.7 0.0001 48.6 1.2 30 358-387 1-30 (2740)
93 PF02439 Adeno_E3_CR2: Adenovi 54.0 9.4 0.0002 23.2 1.4 12 446-457 9-20 (38)
94 PF15179 Myc_target_1: Myc tar 50.9 7.3 0.00016 33.0 0.9 22 438-459 18-39 (197)
95 PF04478 Mid2: Mid2 like cell 50.0 7.6 0.00016 32.1 0.9 23 439-461 48-70 (154)
96 KOG3763 mRNA export factor TAP 49.0 7.5 0.00016 39.3 0.8 62 128-191 218-284 (585)
97 PF08374 Protocadherin: Protoc 46.3 12 0.00026 32.8 1.6 26 437-462 35-60 (221)
98 PF08114 PMP1_2: ATPase proteo 45.8 17 0.00037 22.4 1.7 10 458-467 25-34 (43)
99 TIGR00864 PCC polycystin catio 44.8 19 0.00042 43.8 3.3 32 334-365 1-32 (2740)
100 PF01102 Glycophorin_A: Glycop 43.1 14 0.0003 29.6 1.3 19 442-460 66-84 (122)
101 PF00558 Vpu: Vpu protein; In 40.4 21 0.00045 26.1 1.7 16 447-462 10-25 (81)
102 PF15102 TMEM154: TMEM154 prot 40.3 22 0.00048 29.2 2.1 17 451-467 70-86 (146)
103 PF15050 SCIMP: SCIMP protein 38.4 17 0.00037 28.4 1.1 11 461-471 28-38 (133)
104 PF02009 Rifin_STEVOR: Rifin/s 37.6 18 0.00038 34.1 1.3 30 445-474 262-291 (299)
105 smart00367 LRR_CC Leucine-rich 36.7 26 0.00056 19.1 1.4 11 99-109 2-12 (26)
106 PF01034 Syndecan: Syndecan do 36.7 12 0.00025 25.9 -0.0 15 443-457 12-26 (64)
107 PF06305 DUF1049: Protein of u 36.3 25 0.00055 24.6 1.7 13 446-458 25-37 (68)
108 COG3216 Uncharacterized protei 32.5 25 0.00054 29.8 1.3 35 438-472 135-169 (184)
109 PF09835 DUF2062: Uncharacteri 30.1 40 0.00086 28.2 2.2 7 448-454 124-130 (154)
110 PF08374 Protocadherin: Protoc 29.6 20 0.00042 31.5 0.2 25 442-466 36-60 (221)
111 PF01708 Gemini_mov: Geminivir 28.3 17 0.00037 26.9 -0.3 16 458-473 49-64 (91)
112 TIGR00985 3a0801s04tom mitocho 26.3 46 0.00099 27.7 1.8 9 451-459 17-25 (148)
113 PF12297 EVC2_like: Ellis van 25.7 37 0.00079 33.2 1.3 27 439-465 64-90 (429)
114 PF01299 Lamp: Lysosome-associ 25.4 45 0.00098 31.7 2.0 10 377-386 229-238 (306)
115 PF15069 FAM163: FAM163 family 23.6 69 0.0015 26.2 2.3 29 441-469 7-35 (143)
116 PF05568 ASFV_J13L: African sw 23.2 58 0.0013 26.4 1.8 21 447-467 32-52 (189)
117 PRK11677 hypothetical protein; 21.0 57 0.0012 26.6 1.4 21 444-464 5-25 (134)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.7e-47 Score=416.27 Aligned_cols=414 Identities=30% Similarity=0.433 Sum_probs=298.4
Q ss_pred cccccCcccceeeeehhccCCC------hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCC
Q 048443 3 RCLCSELTRLTILLFYLMTSDS------PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLE 75 (486)
Q Consensus 3 ~c~c~~l~~l~~~~~~~~~~~~------~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 75 (486)
++.+.+|++++++++.+....+ +.|+.|+ ++|.+.+.+|..++++++|++|+|++|++.+.+|..|+.+++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 4567788888888877554433 3344444 67888888888888888888888888888888888888888888
Q ss_pred eeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCC
Q 048443 76 RLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSL 154 (486)
Q Consensus 76 ~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 154 (486)
+|+++ +|.+++.+|..+.+ +++|++|++++|.+... +|..+. +++|++|++++|.+++.+|..+.++++|
T Consensus 240 ~L~L~-~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 310 (968)
T PLN00113 240 HLDLV-YNNLTGPIPSSLGN--LKNLQYLFLYQNKLSGP------IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL 310 (968)
T ss_pred EEECc-CceeccccChhHhC--CCCCCEEECcCCeeecc------CchhHhhccCcCEEECcCCeeccCCChhHcCCCCC
Confidence 88888 88888888888888 88888888888887643 444444 6667777777777666666666666677
Q ss_pred CEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccC
Q 048443 155 YVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRN 234 (486)
Q Consensus 155 ~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 234 (486)
+.|++++|.+.+..|..+..+++ |+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|.++..+++|+.|++++
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPR-LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCC-CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC
Confidence 77777766666666666666665 66666666666666666666666666666666666666666665566666666666
Q ss_pred CccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccccc----------ccccccc---
Q 048443 235 NQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLS----------SYFSFDF--- 301 (486)
Q Consensus 235 N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~----------~~~~~~~--- 301 (486)
|.+.+..|.++..+++|+.|++++|. +.+.+|.. |..++.|+.+++++|........ ..+..+.
T Consensus 390 n~l~~~~p~~~~~~~~L~~L~L~~n~--l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 390 NSLEGEIPKSLGACRSLRRVRLQDNS--FSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CEecccCCHHHhCCCCCCEEECcCCE--eeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 66655556555566666666665543 33344433 44555555555554432111100 0000000
Q ss_pred ---cccCCCCcceEEeecCCCccccCc---ccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCC
Q 048443 302 ---YRYFPQNDYSITMSNEGQMMTHDK---IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSL 375 (486)
Q Consensus 302 ---~~~~~~~~~~l~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 375 (486)
...-...+..++++++.+....+. .++.|+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|..+
T Consensus 467 ~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred ecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 001124577888888887655443 36789999999999999999999999999999999999999999999999
Q ss_pred CCCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCC
Q 048443 376 TNLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKP 429 (486)
Q Consensus 376 ~~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~ 429 (486)
++|+.|||++|+ +++|+.+++++|+++|.+|...++.++...++.|||.+|+.+
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999 457999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.4e-43 Score=386.99 Aligned_cols=413 Identities=26% Similarity=0.371 Sum_probs=354.7
Q ss_pred ccccCcccceeeeehhccCCC------hhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCe
Q 048443 4 CLCSELTRLTILLFYLMTSDS------PFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLER 76 (486)
Q Consensus 4 c~c~~l~~l~~~~~~~~~~~~------~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 76 (486)
+...+|++++++.+.+....+ +.|+.|+ ++|.+.+.+|..++++++|++|+|++|++.+.+|..++.+++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 346788999999887654433 3455555 789999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCC
Q 048443 77 LDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLY 155 (486)
Q Consensus 77 L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 155 (486)
|+++ +|.+.+.+|..+.. +++|++|++++|.++.. +|..+. +++|++|++++|.+++.+|..+.++++|+
T Consensus 217 L~L~-~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 217 IYLG-YNNLSGEIPYEIGG--LTSLNHLDLVYNNLTGP------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred EECc-CCccCCcCChhHhc--CCCCCEEECcCceeccc------cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcC
Confidence 9999 99999999999999 99999999999998865 566676 89999999999999999999999999999
Q ss_pred EEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCC
Q 048443 156 VLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNN 235 (486)
Q Consensus 156 ~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 235 (486)
+|++++|.+.+..|..+..++. |+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|
T Consensus 288 ~L~Ls~n~l~~~~p~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 288 SLDLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred EEECcCCeeccCCChhHcCCCC-CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 9999999999999999999987 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhcccccccc----------ccccccc--
Q 048443 236 QINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSY----------FSFDFYR-- 303 (486)
Q Consensus 236 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~----------~~~~~~~-- 303 (486)
.+.+..|.++..+++|+.|++++|. ..+.+|.. +..+++|+.+++++|.........+ ++.+...
T Consensus 367 ~l~~~~p~~~~~~~~L~~L~l~~n~--l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 367 NLTGEIPEGLCSSGNLFKLILFSNS--LEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred eeEeeCChhHhCcCCCCEEECcCCE--ecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 9999999999999999999999975 56677765 7889999999999885432221111 1111111
Q ss_pred -----cCCCCcceEEeecCCCccccCcc--cCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCC
Q 048443 304 -----YFPQNDYSITMSNEGQMMTHDKI--PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLT 376 (486)
Q Consensus 304 -----~~~~~~~~l~~~~~~~~~~~~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 376 (486)
.-.+.+..++++++.+....+.. .++|+.|++++|++++..|..+..+++|++|+|++|++.+.+|..+..++
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred cChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 11245677777777765444332 46799999999999999999999999999999999999999999999999
Q ss_pred CCCEEeCCCCC-----------CCCCCEEeccCCccccCCCCC-CCCCCCCCccccCCcCCCCCC
Q 048443 377 NLESLDLSKNR-----------LTFLEFFNATHNNLTGPIPQA-NQFPTFGYSSFNGNSRLCGKP 429 (486)
Q Consensus 377 ~L~~L~Ls~N~-----------l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~np~~c~~~ 429 (486)
+|++|++++|. +++|+.|++++|++++.+|.. ..+..+..+++.+|++.+..|
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999998 568999999999999999976 456678888899999876444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-40 Score=310.20 Aligned_cols=387 Identities=22% Similarity=0.191 Sum_probs=316.0
Q ss_pred CCcccccCcccceeeeeh-hcc--------CCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccC
Q 048443 1 EKRCLCSELTRLTILLFY-LMT--------SDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGS 70 (486)
Q Consensus 1 ~~~c~c~~l~~l~~~~~~-~~~--------~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~ 70 (486)
|+.|.|. +.+-.|+.. +.. -.|+..+.|+ ++|.++..-+..|.++++|+.+.+.+|.+ ..+|.....
T Consensus 47 pa~c~c~--~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-t~IP~f~~~ 123 (873)
T KOG4194|consen 47 PATCPCN--TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-TRIPRFGHE 123 (873)
T ss_pred CCcCCCC--ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh-hhccccccc
Confidence 5566665 344444433 222 2356677788 77777777778899999999999999994 567766666
Q ss_pred CCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCcccc
Q 048443 71 LSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWIC 149 (486)
Q Consensus 71 l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~ 149 (486)
..+|+.|+|. +|.|+.+-.+.+.. ++.|+.||||.|.|+++|. ..|. -.++++|+|++|.|+....+.|.
T Consensus 124 sghl~~L~L~-~N~I~sv~se~L~~--l~alrslDLSrN~is~i~~------~sfp~~~ni~~L~La~N~It~l~~~~F~ 194 (873)
T KOG4194|consen 124 SGHLEKLDLR-HNLISSVTSEELSA--LPALRSLDLSRNLISEIPK------PSFPAKVNIKKLNLASNRITTLETGHFD 194 (873)
T ss_pred ccceeEEeee-ccccccccHHHHHh--HhhhhhhhhhhchhhcccC------CCCCCCCCceEEeecccccccccccccc
Confidence 6779999999 99999988888888 9999999999999998763 2233 57899999999999988888999
Q ss_pred CCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCE
Q 048443 150 NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEI 229 (486)
Q Consensus 150 ~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 229 (486)
++.+|.+|.|+.|+|+...+..|.+++. |+.|+|..|+|.-.---.|.++++|+.|.|..|.+...-..+|..+.++++
T Consensus 195 ~lnsL~tlkLsrNrittLp~r~Fk~L~~-L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITTLPQRSFKRLPK-LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred ccchheeeecccCcccccCHHHhhhcch-hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 9999999999999999666667777998 999999999997665667999999999999999999777889999999999
Q ss_pred EEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCc
Q 048443 230 SDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQND 309 (486)
Q Consensus 230 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (486)
|+|..|++......|+.+++.|+.|++++| .+..|....++.+.+|+.+++++|....--++.
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N---aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s-------------- 336 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYN---AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS-------------- 336 (873)
T ss_pred eecccchhhhhhcccccccchhhhhccchh---hhheeecchhhhcccceeEeccccccccCChhH--------------
Confidence 999999999989999999999999999999 677777677888889998888888432211111
Q ss_pred ceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCch---hccCCCCCCEEeCCCC
Q 048443 310 YSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS---CLGSLTNLESLDLSKN 386 (486)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N 386 (486)
...+..|++|.|++|+++..--..|..+++|++|||++|.|+..+.+ .|.++++|+.|++.+|
T Consensus 337 --------------f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 337 --------------FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred --------------HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 11246699999999999877777899999999999999998865544 5788999999999999
Q ss_pred C-----------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCCCCCCCC
Q 048443 387 R-----------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRLCGKPLP 431 (486)
Q Consensus 387 ~-----------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~c~~~~~ 431 (486)
+ +..|++||+.+|.+..+-|....-..+..+-+..-.++|||.+.
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred eeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence 9 66889999999999877776533335666777788899988653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-35 Score=279.38 Aligned_cols=340 Identities=21% Similarity=0.144 Sum_probs=284.2
Q ss_pred cccceeeeehhccCCC------hhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCC
Q 048443 9 LTRLTILLFYLMTSDS------PFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPP 82 (486)
Q Consensus 9 l~~l~~~~~~~~~~~~------~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~ 82 (486)
...|+++.+.+-.-++ |.|+.+.-.+|....||.......+|+.|+|.+|.|..+-.+.+..++.|++|||+ .
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS-r 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS-R 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh-h
Confidence 3457777776544433 44444446677777899666667789999999999999888999999999999999 9
Q ss_pred CcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcC
Q 048443 83 MKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSD 161 (486)
Q Consensus 83 n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 161 (486)
|.|+.+....|.. -.++++|+|++|.|+.+. ...|. +.+|.+|.|+.|+++...+..|..+++|+.|+|..
T Consensus 159 N~is~i~~~sfp~--~~ni~~L~La~N~It~l~------~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 159 NLISEIPKPSFPA--KVNIKKLNLASNRITTLE------TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred chhhcccCCCCCC--CCCceEEeeccccccccc------cccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 9999776677766 689999999999999763 23444 78999999999999977777889999999999999
Q ss_pred CcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCC
Q 048443 162 NNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTF 241 (486)
Q Consensus 162 N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 241 (486)
|+|....-..|.++++ |+.|.+..|.|.......|..+.++++|+|+.|+++..-..++.++++|+.|++++|.|..+-
T Consensus 231 N~irive~ltFqgL~S-l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPS-LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred cceeeehhhhhcCchh-hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 9998555677888887 999999999999998999999999999999999999877889999999999999999999888
Q ss_pred CccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCcc
Q 048443 242 PIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMM 321 (486)
Q Consensus 242 ~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 321 (486)
+......++|+.|++++| .+..+++..|..+..|+.+.++.|....-.+..+.
T Consensus 310 ~d~WsftqkL~~LdLs~N---~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~------------------------ 362 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSN---RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV------------------------ 362 (873)
T ss_pred cchhhhcccceeEecccc---ccccCChhHHHHHHHhhhhcccccchHHHHhhHHH------------------------
Confidence 888899999999999999 78889999999999999999999854322222221
Q ss_pred ccCcccCcccEEEcccccccccC---ccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC
Q 048443 322 THDKIPDILKGIILSSNRFDGEM---PTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT 389 (486)
Q Consensus 322 ~~~~~~~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 389 (486)
.+.+|++|||++|.++..+ ...|.++++|+.|.|.+|+|..+...+|.++++|++|||.+|.+.
T Consensus 363 ----~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 363 ----GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred ----HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce
Confidence 2467999999999987644 345788999999999999999666668999999999999999843
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=2.9e-32 Score=248.70 Aligned_cols=364 Identities=25% Similarity=0.338 Sum_probs=229.0
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHP 118 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~ 118 (486)
++|++++.+.+++.++.++|.+ ...|++++.+-.|+.++.. +|+++ ..|++++. +.+|..|++.+|+++..|
T Consensus 105 ~lp~~i~s~~~l~~l~~s~n~~-~el~~~i~~~~~l~dl~~~-~N~i~-slp~~~~~--~~~l~~l~~~~n~l~~l~--- 176 (565)
T KOG0472|consen 105 ELPEQIGSLISLVKLDCSSNEL-KELPDSIGRLLDLEDLDAT-NNQIS-SLPEDMVN--LSKLSKLDLEGNKLKALP--- 176 (565)
T ss_pred hccHHHhhhhhhhhhhccccce-eecCchHHHHhhhhhhhcc-ccccc-cCchHHHH--HHHHHHhhccccchhhCC---
Confidence 3555566666666666666663 3344555566666666665 56655 34555555 566666666666666542
Q ss_pred CCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCcccc
Q 048443 119 TVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM 198 (486)
Q Consensus 119 ~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~ 198 (486)
|+.+.++.|++||...|-++ .+|..++.+.+|+.|+|..|+|. .+| .|+.... |++|+++.|.|.....+...
T Consensus 177 ---~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~-L~Elh~g~N~i~~lpae~~~ 249 (565)
T KOG0472|consen 177 ---ENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSL-LKELHVGENQIEMLPAEHLK 249 (565)
T ss_pred ---HHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHH-HHHHHhcccHHHhhHHHHhc
Confidence 22222677788888777777 67777888888888888888887 566 6677666 88888888877644444445
Q ss_pred CCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhc----
Q 048443 199 NGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQC---- 274 (486)
Q Consensus 199 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~---- 274 (486)
.++++..||+..|+++ ..|+.+.-+.+|++||+++|.|+ ..|..++++ .|+.|.+.+|- ...|-.++.++
T Consensus 250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP---lrTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP---LRTIRREIISKGTQE 323 (565)
T ss_pred ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc---hHHHHHHHHcccHHH
Confidence 7888888888888887 67887878888888888888887 567778888 78888877752 11111111110
Q ss_pred -cccccc----cccccchhccccccc------------------cccccccccCC---------CCcceEEeecCCCccc
Q 048443 275 -WNAMKF----ANSSQLRYMENFLSS------------------YFSFDFYRYFP---------QNDYSITMSNEGQMMT 322 (486)
Q Consensus 275 -l~~L~~----l~~~~~~~~~~~~~~------------------~~~~~~~~~~~---------~~~~~l~~~~~~~~~~ 322 (486)
++.|+. -.+++.+........ .......+.+| .-+..++++.+.+...
T Consensus 324 vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el 403 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL 403 (565)
T ss_pred HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh
Confidence 000100 000110000000000 00000111111 1234455555555443
Q ss_pred cCcc---cCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC------------
Q 048443 323 HDKI---PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR------------ 387 (486)
Q Consensus 323 ~~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~------------ 387 (486)
+... -..++.++++.|.++ -+|..+..+++|..|+|++|.+. .+|..++.+..|+.||+|+|+
T Consensus 404 Pk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq 481 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQ 481 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHH
Confidence 3221 122344556666665 67788888899999999988888 788888888889999999988
Q ss_pred ----------------------CCCCCEEeccCCccccCCCCCCCCCCCCCccccCCcCC
Q 048443 388 ----------------------LTFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSRL 425 (486)
Q Consensus 388 ----------------------l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~~ 425 (486)
+..|..||+.+|.+....|..+...++..+.+.||||-
T Consensus 482 ~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 482 TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 45788899999999865555578888888899999987
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.7e-31 Score=254.62 Aligned_cols=358 Identities=23% Similarity=0.327 Sum_probs=199.5
Q ss_pred Chhhhhhc-cCCccc-ccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCC
Q 048443 24 SPFLDRLQ-RLSDFS-GQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNF 101 (486)
Q Consensus 24 ~~~l~~L~-~~n~~~-~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L 101 (486)
.|+++..+ ++|.++ +..|.++..+++++.|.|...+ ...+|+.++.+.+|+.|.++ +|++... -..+.. ++.|
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~-HN~L~~v-hGELs~--Lp~L 80 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMA-HNQLISV-HGELSD--LPRL 80 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhh-hhhhHhh-hhhhcc--chhh
Confidence 34444444 445555 3444455555555555554444 23444555555555555555 4444422 222333 4444
Q ss_pred cEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccch-hhhcCCCC
Q 048443 102 SYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQC-LGNFSGGL 179 (486)
Q Consensus 102 ~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-l~~~~~~L 179 (486)
+.+++.+|++..-. +|..+. +..|..||||+|+++ ..|..+..-.++-.|+||+|+|. .+|.. |.++.. |
T Consensus 81 Rsv~~R~N~LKnsG-----iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtD-L 152 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSG-----IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTD-L 152 (1255)
T ss_pred HHHhhhccccccCC-----CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHh-H
Confidence 55555555443111 222222 444555555555554 44444444444455555555554 23322 233333 4
Q ss_pred cEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc-cCCCccccCCCCCCEEEcCc
Q 048443 180 SVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN-DTFPIWLGSLLELNILVLIQ 258 (486)
Q Consensus 180 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 258 (486)
-.||||+|++. .+|..+..+..|++|+|++|.+....-..+..+++|++|.+++.+-+ ..+|..+..+.+|..++++.
T Consensus 153 LfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 153 LFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred hhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 44555555443 22333444444555555555443211122233444444444443322 23444444555555555554
Q ss_pred cCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCc--ccCcccEEEcc
Q 048443 259 QLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDK--IPDILKGIILS 336 (486)
Q Consensus 259 n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~L~~L~Ls 336 (486)
| ....+|.. +-.+.+|..++ ++++.++..-.. ...+|++|++|
T Consensus 232 N---~Lp~vPec-ly~l~~LrrLN-------------------------------LS~N~iteL~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 232 N---NLPIVPEC-LYKLRNLRRLN-------------------------------LSGNKITELNMTEGEWENLETLNLS 276 (1255)
T ss_pred c---CCCcchHH-Hhhhhhhheec-------------------------------cCcCceeeeeccHHHHhhhhhhccc
Confidence 4 33334433 22334444444 444444332211 24679999999
Q ss_pred cccccccCccchhccCCCCeeeCCCcccC-ccCchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCC
Q 048443 337 SNRFDGEMPTSIANLKGLQVLGLASNNLQ-GHIPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPI 405 (486)
Q Consensus 337 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~ 405 (486)
.|+++ .+|..+..+++|+.|++.+|+++ +-+|+.++.+.+|+++..++|. +..|+.|.+++|++. +.
T Consensus 277 rNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TL 354 (1255)
T KOG0444|consen 277 RNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TL 354 (1255)
T ss_pred cchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-ec
Confidence 99999 89999999999999999999987 3688999999999999999998 568999999999998 56
Q ss_pred CCC-CCCCCCCCccccCCcCCCCCCCCC
Q 048443 406 PQA-NQFPTFGYSSFNGNSRLCGKPLPK 432 (486)
Q Consensus 406 p~~-~~~~~~~~~~~~~np~~c~~~~~~ 432 (486)
|.+ ..+..+..+++..||.+.-+|-+.
T Consensus 355 PeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 766 456678888999999998776553
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.95 E-value=1.1e-29 Score=231.60 Aligned_cols=369 Identities=19% Similarity=0.180 Sum_probs=269.0
Q ss_pred CCcccccCcc-cceeeeehhc----cCCChhhhhhc-cCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCC
Q 048443 1 EKRCLCSELT-RLTILLFYLM----TSDSPFLDRLQ-RLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSL 74 (486)
Q Consensus 1 ~~~c~c~~l~-~l~~~~~~~~----~~~~~~l~~L~-~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 74 (486)
|+.|+|+... -.+.|...+. +..|+....++ ..|.|+...|.+|+.+++|++||||+|+|..+-|++|.++.+|
T Consensus 38 P~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l 117 (498)
T KOG4237|consen 38 PAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASL 117 (498)
T ss_pred CCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhh
Confidence 7899998743 2344544433 44556666666 8899999999999999999999999999999999999999999
Q ss_pred CeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCC
Q 048443 75 ERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSS 153 (486)
Q Consensus 75 ~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 153 (486)
.+|.+.++|+|+......|.+ +..|+.|.+.-|++.-+ ..+.+. ++++..|.+.+|.+.......|.++..
T Consensus 118 ~~Lvlyg~NkI~~l~k~~F~g--L~slqrLllNan~i~Ci------r~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~ 189 (498)
T KOG4237|consen 118 LSLVLYGNNKITDLPKGAFGG--LSSLQRLLLNANHINCI------RQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA 189 (498)
T ss_pred hHHHhhcCCchhhhhhhHhhh--HHHHHHHhcChhhhcch------hHHHHHHhhhcchhcccchhhhhhccccccchhc
Confidence 998887459999877788888 99999999999998865 334555 788888888888888444447888888
Q ss_pred CCEEECcCCcCc-------------------------------------------------------------cccc-ch
Q 048443 154 LYVLDLSDNNLS-------------------------------------------------------------GELL-QC 171 (486)
Q Consensus 154 L~~L~Ls~N~i~-------------------------------------------------------------~~~~-~~ 171 (486)
++++++..|.+- +..| .+
T Consensus 190 i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c 269 (498)
T KOG4237|consen 190 IKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKC 269 (498)
T ss_pred cchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHH
Confidence 888888777411 0112 34
Q ss_pred hhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCC
Q 048443 172 LGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLEL 251 (486)
Q Consensus 172 l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 251 (486)
|..++. |+.|++++|+++.+.+.+|.+...+++|.|..|++...-...|.++..|++|+|.+|+|+...|.+|..+.+|
T Consensus 270 f~~L~~-L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPN-LRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred Hhhccc-ceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 666776 9999999999999999999999999999999999987777789999999999999999998899999999999
Q ss_pred CEEEcCccCCC----------------ccccCChhhhhccccccccccccch---hccccccccccccccccCCC----C
Q 048443 252 NILVLIQQLPC----------------FMGKLPSKYFQCWNAMKFANSSQLR---YMENFLSSYFSFDFYRYFPQ----N 308 (486)
Q Consensus 252 ~~L~l~~n~~~----------------~~~~ip~~~~~~l~~L~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~----~ 308 (486)
..|++-.|--+ ..+..|-. .=..++.+++++.. ...... +..+-.....-|+ .
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq---~p~~~~~~~~~dv~~~~~~c~~~-ee~~~~~s~~cP~~c~c~ 424 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ---SPGFVRQIPISDVAFGDFRCGGP-EELGCLTSSPCPPPCTCL 424 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhhCCCCCCCCCC---CCchhccccchhccccccccCCc-cccCCCCCCCCCCCcchh
Confidence 99998775311 01111100 00112222222221 111100 0000000111111 1
Q ss_pred cceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCC
Q 048443 309 DYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKN 386 (486)
Q Consensus 309 ~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 386 (486)
.+...++++.+...+..+|...+++++.+|.++ .+|.. .+++| .+|+++|++...--..|.++++|.+|-|++|
T Consensus 425 ~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 425 DTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 233456677777777778888999999999998 77776 67778 8999999998555557888888888888876
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=4e-30 Score=246.65 Aligned_cols=353 Identities=21% Similarity=0.223 Sum_probs=218.2
Q ss_pred cCcccceeeeehhccCCCh-------hhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeecc
Q 048443 7 SELTRLTILLFYLMTSDSP-------FLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDT 79 (486)
Q Consensus 7 ~~l~~l~~~~~~~~~~~~~-------~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 79 (486)
.-.+-.|.+++.+-...+| .++.|.-+..=...+|+.++.+.+|++|.+++|++..+ -..++.++.|+.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 3344556666654444433 22333333333456788888888888888888886543 356778888888888
Q ss_pred CCCCccc-ccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEE
Q 048443 80 FPPMKIH-GNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVL 157 (486)
Q Consensus 80 ~~~n~i~-~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 157 (486)
. +|++. .-+|..++. +..|+.||||+|++.+.|. ... .+++-.|+||+|+|..+....|.+++.|-.|
T Consensus 86 R-~N~LKnsGiP~diF~--l~dLt~lDLShNqL~EvP~-------~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 86 R-DNNLKNSGIPTDIFR--LKDLTILDLSHNQLREVPT-------NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred h-ccccccCCCCchhcc--cccceeeecchhhhhhcch-------hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 8 77765 346777777 8888888888888888543 333 5777788888888884444456778888888
Q ss_pred ECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccc-cccCccCcCCCCCCEEEccCCc
Q 048443 158 DLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ-GKIPKSLANCAVLEISDLRNNQ 236 (486)
Q Consensus 158 ~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~ 236 (486)
|||+|++. .+|..+..+.. |++|.|++|.+....-..+..+++|+.|.+++.+=+ ..+|.++..+.+|..+|++.|.
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~-LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSM-LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred ccccchhh-hcCHHHHHHhh-hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 88888887 67777777777 888888888775443344445555666666555422 2455566666666666666666
Q ss_pred cccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeec
Q 048443 237 INDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSN 316 (486)
Q Consensus 237 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 316 (486)
+. ..|..+..+++|+.|++++| .+.++... ...+.+++.++++.|.... ..... +.+ +.+..+...+
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N---~iteL~~~-~~~W~~lEtLNlSrNQLt~-LP~av------cKL-~kL~kLy~n~ 300 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGN---KITELNMT-EGEWENLETLNLSRNQLTV-LPDAV------CKL-TKLTKLYANN 300 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcC---ceeeeecc-HHHHhhhhhhccccchhcc-chHHH------hhh-HHHHHHHhcc
Confidence 64 45666666666666666665 33333222 2334555555555552210 00000 000 0000111111
Q ss_pred CCCc-cccCc---ccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 317 EGQM-MTHDK---IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 317 ~~~~-~~~~~---~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
+.+. ..+++ .+..|+++..++|.+. .+|+.+..+..|+.|.|+.|++. .+|+++.-++.|+.||+..|+
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 1111 11111 1455777777777776 77888888888888888888877 777888778888888888877
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=7e-29 Score=248.26 Aligned_cols=377 Identities=25% Similarity=0.326 Sum_probs=220.1
Q ss_pred hhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEc
Q 048443 27 LDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNL 106 (486)
Q Consensus 27 l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~L 106 (486)
|++|+-.|+..+..|..+..+.+|+.|.++.|.| ...|.+...+.+|+++.|. +|.+. ..|..+.. +++|++||+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i-~~vp~s~~~~~~l~~lnL~-~n~l~-~lP~~~~~--lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI-RSVPSSCSNMRNLQYLNLK-NNRLQ-SLPASISE--LKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhH-hhCchhhhhhhcchhheec-cchhh-cCchhHHh--hhccccccc
Confidence 4555555666666676777777777777777764 3455666677777777776 66555 56777776 777777777
Q ss_pred cCCCCCCCCC-CCCC-----CC-------cccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhh
Q 048443 107 SKNYFPRFDQ-HPTV-----LP-------WTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLG 173 (486)
Q Consensus 107 s~N~l~~~~~-l~~l-----~p-------~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~ 173 (486)
|+|.+..+|. +..+ .. ..++-..++.+++..|.+.+.++..+..+.+ .|||++|.+.......+.
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhcc
Confidence 7777776554 1111 00 0011122555555555555555555555444 456666555411111110
Q ss_pred h-----------------cCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCc
Q 048443 174 N-----------------FSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQ 236 (486)
Q Consensus 174 ~-----------------~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 236 (486)
. .+ +++.|+.++|.++...+. ....+|+++++++|+++ .+|+++..+.+|+.++..+|+
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~-~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGP-SLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred chhhhhhhhcccceEEecCc-chheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchh
Confidence 0 01 244444444444422211 11245666666666666 445666666666666666666
Q ss_pred ccc----------------------CCCccccCCCCCCEEEcCccCCCccccCChhhhhcccc-ccccccccchhccccc
Q 048443 237 IND----------------------TFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNA-MKFANSSQLRYMENFL 293 (486)
Q Consensus 237 l~~----------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~-L~~l~~~~~~~~~~~~ 293 (486)
++. .+|.....++.|+.|++..| ..+.+|...+..... +..++.+.+..-. ..
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N---~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp 351 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN---NLPSLPDNFLAVLNASLNTLNVSSNKLST-LP 351 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc---cccccchHHHhhhhHHHHHHhhhhccccc-cc
Confidence 531 34555555666677777666 556666655554443 4444444332100 00
Q ss_pred cccccccccccCCCCcceEEeecCCCccccCc---ccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCch
Q 048443 294 SSYFSFDFYRYFPQNDYSITMSNEGQMMTHDK---IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS 370 (486)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 370 (486)
. ........+..+.+.+|.+...... ...+|+.|+|++|++.......+.++..|++|+||+|+++ .+|+
T Consensus 352 -~-----~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 352 -S-----YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD 424 (1081)
T ss_pred -c-----ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence 0 0000112233444555555444322 3577888888888887444445777888888888888888 7777
Q ss_pred hccCCCCCCEEeCCCCC---------CCCCCEEeccCCccc-cCCCCCCCCCCCCCccccCCcCC
Q 048443 371 CLGSLTNLESLDLSKNR---------LTFLEFFNATHNNLT-GPIPQANQFPTFGYSSFNGNSRL 425 (486)
Q Consensus 371 ~~~~l~~L~~L~Ls~N~---------l~~L~~L~ls~N~l~-~~~p~~~~~~~~~~~~~~~np~~ 425 (486)
.+..+..|++|...+|+ +++|+.+|+|.|+|+ ..+|.....++++.+++.||+++
T Consensus 425 tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred HHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 77888888888888877 668899999999997 45555545578889999999964
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.9e-29 Score=230.41 Aligned_cols=332 Identities=27% Similarity=0.357 Sum_probs=209.1
Q ss_pred hhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEE
Q 048443 26 FLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLN 105 (486)
Q Consensus 26 ~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~ 105 (486)
.+..|+..|+-...+|+++..+.++..+++.+|++....|..+. ++.|++||.. .|-+. .+|..++. +.+|+.|+
T Consensus 138 ~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~-~N~L~-tlP~~lg~--l~~L~~Ly 212 (565)
T KOG0472|consen 138 DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN-SNLLE-TLPPELGG--LESLELLY 212 (565)
T ss_pred hhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc-hhhhh-cCChhhcc--hhhhHHHH
Confidence 34445533333344666788888888888888887665555555 8888888876 65554 67888888 88888888
Q ss_pred ccCCCCCCCCCCCCC---------------CCcccc--cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccc
Q 048443 106 LSKNYFPRFDQHPTV---------------LPWTTL--STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGEL 168 (486)
Q Consensus 106 Ls~N~l~~~~~l~~l---------------~p~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 168 (486)
|.+|+|..+|.++.- +|+... ++++.+||+.+|+++ ..|+.+.-+.+|+.||+|+|.|+ .+
T Consensus 213 L~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~L 290 (565)
T KOG0472|consen 213 LRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SL 290 (565)
T ss_pred hhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cC
Confidence 888888876653211 333333 556666666666666 55666666666666666666666 45
Q ss_pred cchhhhcCCCCcEEEccCcccccc--------------------------------------CCccc---cCCCCccEEE
Q 048443 169 LQCLGNFSGGLSVLSLQGKNFFGT--------------------------------------TPDTF---MNGSDLRMVD 207 (486)
Q Consensus 169 ~~~l~~~~~~L~~L~L~~n~i~~~--------------------------------------~~~~~---~~l~~L~~L~ 207 (486)
|..++++ . |+.|-+.+|.+..+ .+..| ..+.+.+.|+
T Consensus 291 p~sLgnl-h-L~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~ 368 (565)
T KOG0472|consen 291 PYSLGNL-H-LKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD 368 (565)
T ss_pred Ccccccc-e-eeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence 5566665 2 66666666654211 00001 1123345555
Q ss_pred CcCCccccccCccCcCCCC---CCEEEccCCccccCCCccccCCCCCC-EEEcCccCCCccccCChhhhhcccccccccc
Q 048443 208 LSHNLLQGKIPKSLANCAV---LEISDLRNNQINDTFPIWLGSLLELN-ILVLIQQLPCFMGKLPSKYFQCWNAMKFANS 283 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~ 283 (486)
+++-+++ .+|.....-.. ....+++.|++. .+|..+..+..+. .+.+++| .++.+|.. ++.+++++++++
T Consensus 369 ~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn---~isfv~~~-l~~l~kLt~L~L 442 (565)
T KOG0472|consen 369 VSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNN---KISFVPLE-LSQLQKLTFLDL 442 (565)
T ss_pred ccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcC---ccccchHH-HHhhhcceeeec
Confidence 5555555 34443332222 567788888876 4565555555443 3444554 45555554 677788888888
Q ss_pred ccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcc
Q 048443 284 SQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNN 363 (486)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 363 (486)
++|-. . .+|.+.. . .-.|+.|++|.|+|. .+|..+..+..++.+-.++|+
T Consensus 443 ~NN~L-n-------------~LP~e~~--------------~-lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 443 SNNLL-N-------------DLPEEMG--------------S-LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQ 492 (565)
T ss_pred ccchh-h-------------hcchhhh--------------h-hhhhheecccccccc-cchHHHhhHHHHHHHHhcccc
Confidence 87722 1 1111100 0 234888888888887 778877777777777777788
Q ss_pred cCccCchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccc
Q 048443 364 LQGHIPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLT 402 (486)
Q Consensus 364 l~~~~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~ 402 (486)
+....|+.+.++.+|++|||.+|. +++|++|++++|+|.
T Consensus 493 i~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 IGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 887777778888888888888887 667888888888887
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.9e-21 Score=215.40 Aligned_cols=320 Identities=20% Similarity=0.241 Sum_probs=209.8
Q ss_pred cccccCCcCCCCCC-CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCC-CC
Q 048443 35 DFSGQIPPSLGNLN-QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNY-FP 112 (486)
Q Consensus 35 ~~~~~~p~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~-l~ 112 (486)
++...+|..|..++ +|+.|++.++.+ ..+|..| ...+|++|++. ++++. .++..+.. +++|+.|+|+++. +.
T Consensus 575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~~~~L~~L~L~-~s~l~-~L~~~~~~--l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 575 EVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-RPENLVKLQMQ-GSKLE-KLWDGVHS--LTGLRNIDLRGSKNLK 648 (1153)
T ss_pred cceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-CccCCcEEECc-Ccccc-cccccccc--CCCCCEEECCCCCCcC
Confidence 34455676676654 588888887774 4556666 45778888887 77776 45666666 7888888887764 44
Q ss_pred CCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccccc
Q 048443 113 RFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGT 192 (486)
Q Consensus 113 ~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~ 192 (486)
.+| ....+++|++|++++|.....+|..+..+++|+.|++++|..-..+|..+ .+.+ |+.|++++|.....
T Consensus 649 ~ip-------~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s-L~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 649 EIP-------DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS-LYRLNLSGCSRLKS 719 (1153)
T ss_pred cCC-------ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-CCEEeCCCCCCccc
Confidence 433 21126778888888876555777778888888888888765444566554 4554 88888887766555
Q ss_pred CCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccc-------cCCCccccCCCCCCEEEcCccCCCccc
Q 048443 193 TPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN-------DTFPIWLGSLLELNILVLIQQLPCFMG 265 (486)
Q Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~n~~~~~~ 265 (486)
.|.. ..+|++|++++|.+. .+|..+ .+++|++|++.++... ...+..+...++|+.|+++++. ...
T Consensus 720 ~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~--~l~ 792 (1153)
T PLN03210 720 FPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP--SLV 792 (1153)
T ss_pred cccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCC--Ccc
Confidence 5532 356777888888776 455543 4566666666553211 1112222334567777776653 455
Q ss_pred cCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCc
Q 048443 266 KLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMP 345 (486)
Q Consensus 266 ~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 345 (486)
.+|.. +..+++|+.++++++..+...... ...+.+..++++++.....++..+.+++.|+|++|.++ .+|
T Consensus 793 ~lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~--------~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP 862 (1153)
T PLN03210 793 ELPSS-IQNLHKLEHLEIENCINLETLPTG--------INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVP 862 (1153)
T ss_pred ccChh-hhCCCCCCEEECCCCCCcCeeCCC--------CCccccCEEECCCCCccccccccccccCEeECCCCCCc-cCh
Confidence 56655 566777777777665433221111 01234556666665555555555678999999999998 788
Q ss_pred cchhccCCCCeeeCCCc-ccCccCchhccCCCCCCEEeCCCCC
Q 048443 346 TSIANLKGLQVLGLASN-NLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 346 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.++..+++|+.|++++| .+. .+|..+..+++|+.+++++|.
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 88999999999999985 455 677778889999999999886
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=5.5e-26 Score=227.63 Aligned_cols=357 Identities=24% Similarity=0.296 Sum_probs=247.8
Q ss_pred CCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCC
Q 048443 43 SLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLP 122 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p 122 (486)
.+.+..+|+.||+++|+ .+..|..+..+.+|+.|.++ .|.|. ..|.+..+ +.+|++|+|.+|.+... |
T Consensus 40 ~~~~~v~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s-~n~i~-~vp~s~~~--~~~l~~lnL~~n~l~~l-------P 107 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLS-RNYIR-SVPSSCSN--MRNLQYLNLKNNRLQSL-------P 107 (1081)
T ss_pred HhhheeeeEEeeccccc-cccCCchhhhHHHHhhcccc-hhhHh-hCchhhhh--hhcchhheeccchhhcC-------c
Confidence 44445669999999999 56788899999999999999 99998 56788888 99999999999999874 5
Q ss_pred cccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCC-------------------cCcccccchhhhcCCCCc-E
Q 048443 123 WTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDN-------------------NLSGELLQCLGNFSGGLS-V 181 (486)
Q Consensus 123 ~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-------------------~i~~~~~~~l~~~~~~L~-~ 181 (486)
..+. +.+|+.|++++|++. .+|..+..++.++.++.++| .+.+.++.++.. ++ .
T Consensus 108 ~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~----l~~~ 182 (1081)
T KOG0618|consen 108 ASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN----LTHQ 182 (1081)
T ss_pred hhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh----hhee
Confidence 5666 899999999999998 77766666655555555555 444444444433 34 4
Q ss_pred EEccCccccccCCccc-----------------cCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCcc
Q 048443 182 LSLQGKNFFGTTPDTF-----------------MNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIW 244 (486)
Q Consensus 182 L~L~~n~i~~~~~~~~-----------------~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 244 (486)
|+|.+|++....-..+ ...++++.|+.++|.++...+. ..-.+|++++++.|++.+ .|.|
T Consensus 183 ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~w 259 (1081)
T KOG0618|consen 183 LDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEW 259 (1081)
T ss_pred eecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHH
Confidence 8888888762111110 1235567777777777633222 224689999999999985 5599
Q ss_pred ccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchh--ccccccc-------cccccccccCC--------C
Q 048443 245 LGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRY--MENFLSS-------YFSFDFYRYFP--------Q 307 (486)
Q Consensus 245 ~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~--~~~~~~~-------~~~~~~~~~~~--------~ 307 (486)
++.+.+|+.+....| ....+|..++ ...+|..+...+|+. ++...+. .+..+.+..+| .
T Consensus 260 i~~~~nle~l~~n~N---~l~~lp~ri~-~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 260 IGACANLEALNANHN---RLVALPLRIS-RITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred HHhcccceEecccch---hHHhhHHHHh-hhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 999999999999987 4566666643 334455555444422 1111110 01111111111 1
Q ss_pred CcceEEeecCCCcccc---CcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCC
Q 048443 308 NDYSITMSNEGQMMTH---DKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLS 384 (486)
Q Consensus 308 ~~~~l~~~~~~~~~~~---~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 384 (486)
.+..+..+.+.+.... ....+.|+.|.+.+|.+++..-+.+.++++|+.|+|++|++...+...+.++..|++|+||
T Consensus 336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence 1222222222222111 1125668999999999998888889999999999999999995555688999999999999
Q ss_pred CCCC----------CCCCEEeccCCccccCCCCCCCCCCCCCccccCCcC
Q 048443 385 KNRL----------TFLEFFNATHNNLTGPIPQANQFPTFGYSSFNGNSR 424 (486)
Q Consensus 385 ~N~l----------~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~np~ 424 (486)
+|++ ..|++|...+|++. ..|...+...+..++++.|..
T Consensus 416 GNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 416 GNKLTTLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred cchhhhhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchh
Confidence 9994 46789999999998 567777777777777766543
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=7.6e-22 Score=203.72 Aligned_cols=248 Identities=25% Similarity=0.327 Sum_probs=142.7
Q ss_pred CCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCC
Q 048443 33 LSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFP 112 (486)
Q Consensus 33 ~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 112 (486)
.+.++ .+|+.+. ++|+.|++++|++.. +|. ..++|++|+++ +|+++. +|.. .++|+.|++++|.++
T Consensus 210 ~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs-~N~Lts-LP~l-----p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 210 ESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVS-GNQLTS-LPVL-----PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEec-CCccCc-ccCc-----ccccceeeccCCchh
Confidence 34444 3555554 367777777777554 342 24667777777 777764 3431 456777777777776
Q ss_pred CCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccccc
Q 048443 113 RFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGT 192 (486)
Q Consensus 113 ~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~ 192 (486)
.+|. + ..+|+.|++++|+++ .+|.. .++|+.|++++|++++ +|. .+..|+.|++++|.+++
T Consensus 276 ~Lp~----l-----p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~----lp~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 276 HLPA----L-----PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS- 336 (788)
T ss_pred hhhh----c-----hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCC----CcccccccccccCcccc-
Confidence 6543 1 245667777777776 44432 3567777777777763 332 12236677777777754
Q ss_pred CCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhh
Q 048443 193 TPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYF 272 (486)
Q Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~ 272 (486)
+|.. ..+|+.|+|++|+++ .+|.. ..+|+.|++++|++.. +|.. ..+|+.|++++| .+..+|..
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N---~Lt~LP~l-- 400 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGN---RLTSLPVL-- 400 (788)
T ss_pred cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCC---cccCCCCc--
Confidence 3321 136777777777776 34432 2456667777777663 3332 245666666665 22223321
Q ss_pred hccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccC
Q 048443 273 QCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLK 352 (486)
Q Consensus 273 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~ 352 (486)
++.|+.|++++|.++ .+|... .
T Consensus 401 ------------------------------------------------------~s~L~~LdLS~N~Ls-sIP~l~---~ 422 (788)
T PRK15387 401 ------------------------------------------------------PSELKELMVSGNRLT-SLPMLP---S 422 (788)
T ss_pred ------------------------------------------------------ccCCCEEEccCCcCC-CCCcch---h
Confidence 234666666666666 344422 3
Q ss_pred CCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCC
Q 048443 353 GLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRL 388 (486)
Q Consensus 353 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 388 (486)
+|+.|++++|+|+ .+|..+..+++|+.|+|++|++
T Consensus 423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 4566666666666 5566666666666666666653
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=3.1e-21 Score=213.60 Aligned_cols=296 Identities=18% Similarity=0.161 Sum_probs=178.9
Q ss_pred CcccccCCCCCCeeccCCCCc------ccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeeccc
Q 048443 64 LPASIGSLSSLERLDTFPPMK------IHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISK 137 (486)
Q Consensus 64 ~~~~~~~l~~L~~L~L~~~n~------i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~ 137 (486)
.+.+|.++++|+.|.+. .+. +...+|..+... ..+|+.|++.++.+..+| ..+...+|++|++++
T Consensus 550 ~~~aF~~m~~L~~L~~~-~~~~~~~~~~~~~lp~~~~~l-p~~Lr~L~~~~~~l~~lP-------~~f~~~~L~~L~L~~ 620 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFY-TKKWDQKKEVRWHLPEGFDYL-PPKLRLLRWDKYPLRCMP-------SNFRPENLVKLQMQG 620 (1153)
T ss_pred cHHHHhcCccccEEEEe-cccccccccceeecCcchhhc-CcccEEEEecCCCCCCCC-------CcCCccCCcEEECcC
Confidence 44567788888888775 432 333466666551 246888888888777744 344467888888888
Q ss_pred CcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCcccccc
Q 048443 138 NNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI 217 (486)
Q Consensus 138 n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 217 (486)
|++. .++..+..+++|+.|+|+++.....+| .+..+++ |+.|++++|.....+|..+..+++|+.|++++|...+.+
T Consensus 621 s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 621 SKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATN-LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred cccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCc-ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 8877 567777778888888888765443555 3566665 888888887776777777888888888888876544466
Q ss_pred CccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccc
Q 048443 218 PKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYF 297 (486)
Q Consensus 218 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 297 (486)
|..+ ++++|++|++++|......|.. ..+|+.|+++++ .+..+|... .+++|..+.+..+.... .....
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n---~i~~lP~~~--~l~~L~~L~l~~~~~~~-l~~~~- 766 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDET---AIEEFPSNL--RLENLDELILCEMKSEK-LWERV- 766 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCC---ccccccccc--cccccccccccccchhh-ccccc-
Confidence 6554 6788888888887655444432 356778888776 455666542 35555555554431100 00000
Q ss_pred cccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCC
Q 048443 298 SFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTN 377 (486)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 377 (486)
..+.......+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ ++++
T Consensus 767 -------------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s 826 (1153)
T PLN03210 767 -------------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLES 826 (1153)
T ss_pred -------------------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cccc
Confidence 00000001113456666666665554566666666666666666654333455443 4556
Q ss_pred CCEEeCCCCC--------CCCCCEEeccCCccc
Q 048443 378 LESLDLSKNR--------LTFLEFFNATHNNLT 402 (486)
Q Consensus 378 L~~L~Ls~N~--------l~~L~~L~ls~N~l~ 402 (486)
|+.|++++|. .++|+.|++++|.++
T Consensus 827 L~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDISTNISDLNLSRTGIE 859 (1153)
T ss_pred cCEEECCCCCccccccccccccCEeECCCCCCc
Confidence 6666666554 234555555555554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.3e-21 Score=200.15 Aligned_cols=253 Identities=25% Similarity=0.285 Sum_probs=177.4
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccccc
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS 127 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~ 127 (486)
..-..|+++.|.+. .+|..+. ++|+.|++. +|+++. +|. . +++|++|++++|+++.+|. . .
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~-~N~Lt~-LP~---l--p~~Lk~LdLs~N~LtsLP~----l-----p 261 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIP-DNNLTS-LPA---L--PPELRTLEVSGNQLTSLPV----L-----P 261 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEcc-CCcCCC-CCC---C--CCCCcEEEecCCccCcccC----c-----c
Confidence 34567888888866 5666664 478888888 888874 453 2 6788888888888887653 1 3
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
++|++|++++|.++ .+|.. ..+|+.|++++|+++ .+|.. .+ +|+.|++++|++++. |.. ..+|+.|+
T Consensus 262 ~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~-~L~~LdLS~N~L~~L-p~l---p~~L~~L~ 328 (788)
T PRK15387 262 PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PP-GLQELSVSDNQLASL-PAL---PSELCKLW 328 (788)
T ss_pred cccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---cc-ccceeECCCCccccC-CCC---cccccccc
Confidence 57888888888887 45543 246778888888887 44542 23 388888888888753 332 24577788
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR 287 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~ 287 (486)
+++|.++ .+|.. ..+|++|++++|++++ +|.. ..+|+.|++++|. +..+|.
T Consensus 329 Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~---L~~LP~------------------ 379 (788)
T PRK15387 329 AYNNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNR---LTSLPA------------------ 379 (788)
T ss_pred cccCccc-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccc---cccCcc------------------
Confidence 8888887 35531 2478888888888874 3332 2355666666552 222221
Q ss_pred hccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCcc
Q 048443 288 YMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
.+..|+.|++++|.|+ .+|.. .++|+.|++++|+++ .
T Consensus 380 --------------------------------------l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 380 --------------------------------------LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred --------------------------------------cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 1245999999999999 46653 368999999999999 4
Q ss_pred CchhccCCCCCCEEeCCCCC----------CCCCCEEeccCCccccCCCC
Q 048443 368 IPSCLGSLTNLESLDLSKNR----------LTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 368 ~~~~~~~l~~L~~L~Ls~N~----------l~~L~~L~ls~N~l~~~~p~ 407 (486)
+|.. ..+|+.|++++|+ +++|+.+++++|+|++.+|.
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 6653 3478899999999 45678899999999987765
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2.1e-20 Score=194.27 Aligned_cols=247 Identities=24% Similarity=0.337 Sum_probs=169.6
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccccc
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLS 127 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~ 127 (486)
.+.+.|+++++++.. +|..+. +.|+.|+++ +|+++ .+|..+ .++|++|++++|.++.+|. .+ .
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls-~N~Lt-sLP~~l----~~nL~~L~Ls~N~LtsLP~-------~l-~ 240 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILD-NNELK-SLPENL----QGNIKTLYANSNQLTSIPA-------TL-P 240 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEec-CCCCC-cCChhh----ccCCCEEECCCCccccCCh-------hh-h
Confidence 356788888887653 555443 578888888 88887 456554 4578888888888887543 11 3
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
.+|+.|+|++|+++ .+|..+. .+|+.|++++|+++ .+|..+. . +|+.|++++|+++. +|..+. ++|+.|+
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~-sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~ 310 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--E-ELRYLSVYDNSIRT-LPAHLP--SGITHLN 310 (754)
T ss_pred ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--C-CCcEEECCCCcccc-Ccccch--hhHHHHH
Confidence 56888888888887 5666554 47888888888887 4665543 2 38888888888875 343332 4678888
Q ss_pred CcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccch
Q 048443 208 LSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLR 287 (486)
Q Consensus 208 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~ 287 (486)
+++|.++ .+|..+ .++|++|++++|.+++ +|..+. ++|+.|++++| .+..+|..
T Consensus 311 Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N---~L~~LP~~----------------- 364 (754)
T PRK15370 311 VQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKN---QITVLPET----------------- 364 (754)
T ss_pred hcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCC---CCCcCChh-----------------
Confidence 8888887 355433 2578888888888774 444432 57777777776 22334432
Q ss_pred hccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCcc
Q 048443 288 YMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGH 367 (486)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 367 (486)
.++.|+.|++++|.++ .+|..+. ..|+.|++++|++. .
T Consensus 365 --------------------------------------lp~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~ 402 (754)
T PRK15370 365 --------------------------------------LPPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-R 402 (754)
T ss_pred --------------------------------------hcCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-c
Confidence 1246889999999998 5666554 36889999999998 5
Q ss_pred Cchhc----cCCCCCCEEeCCCCCCC
Q 048443 368 IPSCL----GSLTNLESLDLSKNRLT 389 (486)
Q Consensus 368 ~~~~~----~~l~~L~~L~Ls~N~l~ 389 (486)
+|..+ ..++.+..|++.+|+++
T Consensus 403 LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 403 LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 55543 34578888999998853
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=2.4e-22 Score=183.89 Aligned_cols=282 Identities=18% Similarity=0.207 Sum_probs=183.5
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccC-CCCCCCCCC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSK-NYFPRFDQH 117 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~-N~l~~~~~l 117 (486)
++|..+. +....++|..|+|..+.+.+|+.+++|+.|||+ +|+|+.+-|++|.+ +++|..|-+.+ |+|+++|+
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~G--L~~l~~Lvlyg~NkI~~l~k- 133 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKG--LASLLSLVLYGNNKITDLPK- 133 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhh--hHhhhHHHhhcCCchhhhhh-
Confidence 5676665 577889999999999989999999999999999 99999999999999 89887775554 88998754
Q ss_pred CCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcccc------
Q 048443 118 PTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFF------ 190 (486)
Q Consensus 118 ~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~------ 190 (486)
..|. +..++.|.+.-|++.-....+|..+++|..|.+-+|.+...--..|..+.. ++.+++..|.+.
T Consensus 134 -----~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~-i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 134 -----GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA-IKTLHLAQNPFICDCNLP 207 (498)
T ss_pred -----hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhc-cchHhhhcCccccccccc
Confidence 3444 788888888888888777788888899988888888887433346777766 888888877732
Q ss_pred ------ccCCccccCCCCccEEECcCCccccccCccCcCC-CCCCEEEccCCccccCCC-ccccCCCCCCEEEcCccCCC
Q 048443 191 ------GTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANC-AVLEISDLRNNQINDTFP-IWLGSLLELNILVLIQQLPC 262 (486)
Q Consensus 191 ------~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~~~ 262 (486)
...|..+++.....-..+.++++...-+..|... ..+..=-.+.+...+..| ..|..+++|+.|++++|
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN--- 284 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN--- 284 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC---
Confidence 1222233333333333334444432222222211 111000111111112222 23444444444444444
Q ss_pred ccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccc
Q 048443 263 FMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDG 342 (486)
Q Consensus 263 ~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 342 (486)
.+..|....|.. ...+++|.|..|++..
T Consensus 285 ~i~~i~~~aFe~----------------------------------------------------~a~l~eL~L~~N~l~~ 312 (498)
T KOG4237|consen 285 KITRIEDGAFEG----------------------------------------------------AAELQELYLTRNKLEF 312 (498)
T ss_pred ccchhhhhhhcc----------------------------------------------------hhhhhhhhcCcchHHH
Confidence 233333332222 2446777777777775
Q ss_pred cCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 343 EMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 343 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
.-...|.+++.|+.|+|.+|+|+...|.+|..+.+|.+|.|-.|+
T Consensus 313 v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 313 VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 556667778888888888888887777788888888888887777
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.7e-19 Score=186.03 Aligned_cols=236 Identities=21% Similarity=0.320 Sum_probs=135.3
Q ss_pred CCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCC
Q 048443 73 SLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLS 152 (486)
Q Consensus 73 ~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 152 (486)
+...|+++ +++++. +|..+ .++|+.|++++|+++.+|. .+ .++|++|++++|+++ .+|..+. .
T Consensus 179 ~~~~L~L~-~~~Lts-LP~~I----p~~L~~L~Ls~N~LtsLP~-------~l-~~nL~~L~Ls~N~Lt-sLP~~l~--~ 241 (754)
T PRK15370 179 NKTELRLK-ILGLTT-IPACI----PEQITTLILDNNELKSLPE-------NL-QGNIKTLYANSNQLT-SIPATLP--D 241 (754)
T ss_pred CceEEEeC-CCCcCc-CCccc----ccCCcEEEecCCCCCcCCh-------hh-ccCCCEEECCCCccc-cCChhhh--c
Confidence 34556665 555552 44433 3456666666666665432 11 245666666666665 3444332 2
Q ss_pred CCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEc
Q 048443 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDL 232 (486)
Q Consensus 153 ~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 232 (486)
+|+.|++++|.+. .+|..+. . +|+.|++++|++.. +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s-~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~L 311 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--S-ALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNV 311 (754)
T ss_pred cccEEECcCCccC-cCChhHh--C-CCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHh
Confidence 5666666666665 4454433 1 26666666666653 343332 35666666666665 2343322 34555666
Q ss_pred cCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceE
Q 048443 233 RNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSI 312 (486)
Q Consensus 233 ~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (486)
++|.++. +|..+ .++|+.|++++| ....+|.
T Consensus 312 s~N~Lt~-LP~~l--~~sL~~L~Ls~N---~Lt~LP~------------------------------------------- 342 (754)
T PRK15370 312 QSNSLTA-LPETL--PPGLKTLEAGEN---ALTSLPA------------------------------------------- 342 (754)
T ss_pred cCCcccc-CCccc--cccceeccccCC---ccccCCh-------------------------------------------
Confidence 6666553 22222 134455554443 1111221
Q ss_pred EeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCC---
Q 048443 313 TMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLT--- 389 (486)
Q Consensus 313 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--- 389 (486)
..+++|+.|++++|+++ .+|..+. ++|++|+|++|+++ .+|..+. ..|+.|++++|++.
T Consensus 343 ------------~l~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 343 ------------SLPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLP 404 (754)
T ss_pred ------------hhcCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCc
Confidence 12356999999999998 5776553 68999999999999 5665554 36889999999843
Q ss_pred -----------CCCEEeccCCccc
Q 048443 390 -----------FLEFFNATHNNLT 402 (486)
Q Consensus 390 -----------~L~~L~ls~N~l~ 402 (486)
.+..+++.+|+++
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCcc
Confidence 4567888888875
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=7.7e-20 Score=176.34 Aligned_cols=204 Identities=22% Similarity=0.185 Sum_probs=99.2
Q ss_pred EeeCcCCCCC-CCCcccccCCCCCCeeccCCCCccccc----CCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc
Q 048443 52 WLDLAFNNFL-RELPASIGSLSSLERLDTFPPMKIHGN----IPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL 126 (486)
Q Consensus 52 ~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~~n~i~~~----~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~ 126 (486)
.|+|+++.+. ......|..+.+|++|+++ ++.++.. ++..+.. .++|++|+++++.+...+.....++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~-~~~l~~~~~~~i~~~l~~--~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLE-GNTLGEEAAKALASALRP--QPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeec-CCCCcHHHHHHHHHHHhh--CCCceEEeccccccCCcchHHHHHHHHHH
Confidence 3555555554 2333444555556666666 5555321 3333444 55566666666655421110000111122
Q ss_pred -cCccCeeecccCcccccCCccccCCCC---CCEEECcCCcCcc----cccchhhhc-CCCCcEEEccCcccccc----C
Q 048443 127 -STKIRHYLISKNNLTGEIPSWICNLSS---LYVLDLSDNNLSG----ELLQCLGNF-SGGLSVLSLQGKNFFGT----T 193 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~Ls~N~i~~----~~~~~l~~~-~~~L~~L~L~~n~i~~~----~ 193 (486)
+++|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+... +. |+.|++++|.+++. +
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~-L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA-LEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC-ceEEEcCCCcCCchHHHHH
Confidence 456666666666665444444444433 6666666666652 112233333 33 66666666666521 2
Q ss_pred CccccCCCCccEEECcCCccccc----cCccCcCCCCCCEEEccCCccccCC----CccccCCCCCCEEEcCcc
Q 048443 194 PDTFMNGSDLRMVDLSHNLLQGK----IPKSLANCAVLEISDLRNNQINDTF----PIWLGSLLELNILVLIQQ 259 (486)
Q Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~n 259 (486)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|+.|+++++
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 22344555666666666666521 2223444456666666666664322 122334445555555443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=4.4e-19 Score=171.04 Aligned_cols=265 Identities=23% Similarity=0.210 Sum_probs=181.1
Q ss_pred cCCcCCCCCCCCCEeeCcCCCCCCC----CcccccCCCCCCeeccCCCCcccc------cCCchhccccCCCCcEEEccC
Q 048443 39 QIPPSLGNLNQLQWLDLAFNNFLRE----LPASIGSLSSLERLDTFPPMKIHG------NIPKWLLNPSMKNFSYLNLSK 108 (486)
Q Consensus 39 ~~p~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~~n~i~~------~~p~~~~~~~l~~L~~L~Ls~ 108 (486)
..+..+..+.+|+.|+++++.+... ++..+...+.+++++++ .+.+.+ .++..+.. +++|+.|++++
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~-~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~ 90 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTK--GCGLQELDLSD 90 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc-ccccCCcchHHHHHHHHHHh--cCceeEEEccC
Confidence 3344566677799999999987543 45556677889999998 777662 23456666 88999999999
Q ss_pred CCCCCCCCCCCCCCcccc-cCc---cCeeecccCcccc----cCCccccCC-CCCCEEECcCCcCccc----ccchhhhc
Q 048443 109 NYFPRFDQHPTVLPWTTL-STK---IRHYLISKNNLTG----EIPSWICNL-SSLYVLDLSDNNLSGE----LLQCLGNF 175 (486)
Q Consensus 109 N~l~~~~~l~~l~p~~~~-~~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~Ls~N~i~~~----~~~~l~~~ 175 (486)
|.+... .+..+. +.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. .+..+...
T Consensus 91 ~~~~~~------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 164 (319)
T cd00116 91 NALGPD------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164 (319)
T ss_pred CCCChh------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC
Confidence 988642 222232 334 9999999999873 233455667 8999999999999843 23345555
Q ss_pred CCCCcEEEccCcccccc----CCccccCCCCccEEECcCCccccc----cCccCcCCCCCCEEEccCCccccCCCccccC
Q 048443 176 SGGLSVLSLQGKNFFGT----TPDTFMNGSDLRMVDLSHNLLQGK----IPKSLANCAVLEISDLRNNQINDTFPIWLGS 247 (486)
Q Consensus 176 ~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 247 (486)
.. |++|++++|.+.+. ++..+...++|++|++++|.+++. ++..+..+++|++|++++|.+.+.....+..
T Consensus 165 ~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 243 (319)
T cd00116 165 RD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243 (319)
T ss_pred CC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence 55 99999999998742 233455667999999999998643 3445677899999999999987422211110
Q ss_pred CCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCccc
Q 048443 248 LLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIP 327 (486)
Q Consensus 248 l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 327 (486)
. ++ ...
T Consensus 244 ~------------------~~--------------------------------------------------------~~~ 249 (319)
T cd00116 244 A------------------LL--------------------------------------------------------SPN 249 (319)
T ss_pred H------------------Hh--------------------------------------------------------ccC
Confidence 0 00 001
Q ss_pred CcccEEEcccccccc----cCccchhccCCCCeeeCCCcccCcc----CchhccCC-CCCCEEeCCCCC
Q 048443 328 DILKGIILSSNRFDG----EMPTSIANLKGLQVLGLASNNLQGH----IPSCLGSL-TNLESLDLSKNR 387 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l-~~L~~L~Ls~N~ 387 (486)
+.|+.|++++|.+++ .+...+..+++|+++++++|.+++. ....+... +.|+++++.+|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 347888888887752 2344556667888888888888854 33344444 677888877764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=9.4e-19 Score=142.70 Aligned_cols=155 Identities=24% Similarity=0.367 Sum_probs=78.2
Q ss_pred CCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcc
Q 048443 45 GNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWT 124 (486)
Q Consensus 45 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~ 124 (486)
.++.+++.|.||+|++ ..+|..++.+.+|+.|+++ +|+|. .+|..+.. +++|+.|+++.|++.. .|..
T Consensus 30 f~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~-nnqie-~lp~~iss--l~klr~lnvgmnrl~~-------lprg 97 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLS-NNQIE-ELPTSISS--LPKLRILNVGMNRLNI-------LPRG 97 (264)
T ss_pred cchhhhhhhhcccCce-eecCCcHHHhhhhhhhhcc-cchhh-hcChhhhh--chhhhheecchhhhhc-------Cccc
Confidence 3445555666666663 3444455555666666665 55555 34555555 5555555555555443 2334
Q ss_pred cc-cCccCeeecccCcccc-cCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCC
Q 048443 125 TL-STKIRHYLISKNNLTG-EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202 (486)
Q Consensus 125 ~~-~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 202 (486)
|+ ++.|+.|||.+|++.. ..|+.|..+..|+.|+|++|.+. .+|..++++.+ |+.|.+..|.+. ..|..+..+..
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~-lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN-LQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc-eeEEeeccCchh-hCcHHHHHHHH
Confidence 44 4555555555555443 34444555555555555555554 44444454444 555555444443 23344444444
Q ss_pred ccEEECcCCccc
Q 048443 203 LRMVDLSHNLLQ 214 (486)
Q Consensus 203 L~~L~L~~N~l~ 214 (486)
|++|.+.+|.++
T Consensus 175 lrelhiqgnrl~ 186 (264)
T KOG0617|consen 175 LRELHIQGNRLT 186 (264)
T ss_pred HHHHhcccceee
Confidence 444444444444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1e-18 Score=142.42 Aligned_cols=162 Identities=25% Similarity=0.342 Sum_probs=120.0
Q ss_pred CCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccc
Q 048443 70 SLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWI 148 (486)
Q Consensus 70 ~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~ 148 (486)
.+...+.|.|+ +|+++ .+|..++. +.+|+.|++++|+|+++| ..+. +++|+.|+++-|++. ..|..|
T Consensus 31 ~~s~ITrLtLS-HNKl~-~vppnia~--l~nlevln~~nnqie~lp-------~~issl~klr~lnvgmnrl~-~lprgf 98 (264)
T KOG0617|consen 31 NMSNITRLTLS-HNKLT-VVPPNIAE--LKNLEVLNLSNNQIEELP-------TSISSLPKLRILNVGMNRLN-ILPRGF 98 (264)
T ss_pred chhhhhhhhcc-cCcee-ecCCcHHH--hhhhhhhhcccchhhhcC-------hhhhhchhhhheecchhhhh-cCcccc
Confidence 45666777788 88887 45666777 888888888888887754 3444 678888888888877 778888
Q ss_pred cCCCCCCEEECcCCcCcc-cccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCC
Q 048443 149 CNLSSLYVLDLSDNNLSG-ELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVL 227 (486)
Q Consensus 149 ~~l~~L~~L~Ls~N~i~~-~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 227 (486)
+.++.|+.|||.+|.+.. .+|..|+.+.. |+.|++++|.+. .+|.....+++|+.|.+..|.+- .+|..++.+..|
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~t-lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l 175 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTT-LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL 175 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHH-HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence 888888888888877753 56777777766 778888888874 56667778888888888888776 677778888888
Q ss_pred CEEEccCCccccCCCccccC
Q 048443 228 EISDLRNNQINDTFPIWLGS 247 (486)
Q Consensus 228 ~~L~L~~N~l~~~~~~~~~~ 247 (486)
+.|++.+|+++ ..|+.++.
T Consensus 176 relhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 176 RELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHhcccceee-ecChhhhh
Confidence 88888888876 44444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.53 E-value=1.8e-14 Score=149.50 Aligned_cols=108 Identities=37% Similarity=0.639 Sum_probs=95.3
Q ss_pred cccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC-----------CCCCCEEecc
Q 048443 329 ILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR-----------LTFLEFFNAT 397 (486)
Q Consensus 329 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----------l~~L~~L~ls 397 (486)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|||++|+ +++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 48899999999999999999999999999999999999999999999999999999998 5689999999
Q ss_pred CCccccCCCCCC--CCCCCCCccccCCcCCCCCCCCCCCCC
Q 048443 398 HNNLTGPIPQAN--QFPTFGYSSFNGNSRLCGKPLPKECAS 436 (486)
Q Consensus 398 ~N~l~~~~p~~~--~~~~~~~~~~~~np~~c~~~~~~~C~~ 436 (486)
+|+++|.+|... .+.......+.+|+.+|+.|....|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~ 539 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 539 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc
Confidence 999999999752 223445678999999999887677854
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.42 E-value=8e-15 Score=140.89 Aligned_cols=193 Identities=28% Similarity=0.421 Sum_probs=146.1
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~ 176 (486)
+..-...||+.|++.++ |..+. +..|+.+.|..|.+. .+|..+.++..|++|||+.|+++ .+|..+..++
T Consensus 74 ltdt~~aDlsrNR~~el-------p~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSEL-------PEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP 144 (722)
T ss_pred ccchhhhhccccccccC-------chHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc
Confidence 66666778888888874 44555 777888888888888 78888888888888888888888 7788887777
Q ss_pred CCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEc
Q 048443 177 GGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVL 256 (486)
Q Consensus 177 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 256 (486)
|+.|-+++|+++ .+|..+.....|..||.+.|.+. .+|..++++.+|+.|.+..|++.. .|..+..+
T Consensus 145 --Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-------- 211 (722)
T KOG0532|consen 145 --LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-------- 211 (722)
T ss_pred --ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC--------
Confidence 888888888885 45666777778888888888887 566677778888888877777753 22221111
Q ss_pred CccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcc
Q 048443 257 IQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILS 336 (486)
Q Consensus 257 ~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls 336 (486)
.|..||+|
T Consensus 212 ------------------------------------------------------------------------pLi~lDfS 219 (722)
T KOG0532|consen 212 ------------------------------------------------------------------------PLIRLDFS 219 (722)
T ss_pred ------------------------------------------------------------------------ceeeeecc
Confidence 18889999
Q ss_pred cccccccCccchhccCCCCeeeCCCcccCccCchhcc---CCCCCCEEeCCCC
Q 048443 337 SNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLG---SLTNLESLDLSKN 386 (486)
Q Consensus 337 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N 386 (486)
.|+++ .+|..|.+|+.|++|-|.+|.++ .+|..+. ...--++|+..-+
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 99998 89999999999999999999999 6665432 2334466666666
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.38 E-value=6.9e-14 Score=124.42 Aligned_cols=209 Identities=19% Similarity=0.225 Sum_probs=129.9
Q ss_pred ccCcccceeeeehhccCCChhhhhhccCCcccccCCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcc
Q 048443 6 CSELTRLTILLFYLMTSDSPFLDRLQRLSDFSGQIPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKI 85 (486)
Q Consensus 6 c~~l~~l~~~~~~~~~~~~~~l~~L~~~n~~~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i 85 (486)
|.+|.++.+++...+. +..|-+-..+|-.+.-+++|+.+.+|.+. ...+.+....=+.|+++... +..+
T Consensus 181 ~~~l~~l~vs~~~~p~---------~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~-~s~~ 249 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPI---------DRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVH-NTTI 249 (490)
T ss_pred hhheeEEEecCCCCCC---------ccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeee-cccc
Confidence 5666667666544221 23455556667667777888888888776 33333222333566666654 3333
Q ss_pred cc---cCC--------------------chhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCccc
Q 048443 86 HG---NIP--------------------KWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLT 141 (486)
Q Consensus 86 ~~---~~p--------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~ 141 (486)
+. ..| ..+.. .+.|+.||||+|.|+.+ .+++. .+.++.|++|+|.|.
T Consensus 250 ~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dT--Wq~LtelDLS~N~I~~i-------DESvKL~Pkir~L~lS~N~i~ 320 (490)
T KOG1259|consen 250 QDVPSLLPETILADPSGSEPSTSNGSALVSADT--WQELTELDLSGNLITQI-------DESVKLAPKLRRLILSQNRIR 320 (490)
T ss_pred cccccccchhhhcCccCCCCCccCCceEEecch--Hhhhhhccccccchhhh-------hhhhhhccceeEEecccccee
Confidence 21 111 11222 34678888888888774 33444 677888888888887
Q ss_pred ccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCcccccc-Ccc
Q 048443 142 GEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKI-PKS 220 (486)
Q Consensus 142 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~ 220 (486)
.+.. +..+++|+.||||+|.++ .+..+-..+.+ .+.|.|++|.|... ..+..+-+|..||+++|+|...- -..
T Consensus 321 -~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN-IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~ 394 (490)
T KOG1259|consen 321 -TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGN-IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNH 394 (490)
T ss_pred -eehh-hhhcccceEeecccchhH-hhhhhHhhhcC-EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcc
Confidence 3333 777788888888888776 34444445554 77888888877543 24556667788888888776321 235
Q ss_pred CcCCCCCCEEEccCCccccC
Q 048443 221 LANCAVLEISDLRNNQINDT 240 (486)
Q Consensus 221 ~~~l~~L~~L~L~~N~l~~~ 240 (486)
++++|.|+++.|.+|++.+.
T Consensus 395 IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cccccHHHHHhhcCCCcccc
Confidence 67778888888888877643
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.31 E-value=1.3e-11 Score=128.23 Aligned_cols=105 Identities=27% Similarity=0.447 Sum_probs=77.2
Q ss_pred CCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCC
Q 048443 227 LEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFP 306 (486)
Q Consensus 227 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (486)
++.|+|++|.+.+.+|..+..+++|+.|++++|. +.+.+|... ..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~--l~g~iP~~~-~~-------------------------------- 464 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS--IRGNIPPSL-GS-------------------------------- 464 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCc--ccCcCChHH-hC--------------------------------
Confidence 6677777777777777777777777777777764 455555431 11
Q ss_pred CCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCC-CCCCEEeCCC
Q 048443 307 QNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSL-TNLESLDLSK 385 (486)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~ 385 (486)
+++|+.|+|++|++++.+|..+.++++|+.|+|++|++++.+|..+... .++..+++++
T Consensus 465 --------------------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 465 --------------------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred --------------------CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 2558888999999999999999999999999999999999999887653 2334444443
Q ss_pred C
Q 048443 386 N 386 (486)
Q Consensus 386 N 386 (486)
|
T Consensus 525 N 525 (623)
T PLN03150 525 N 525 (623)
T ss_pred C
Confidence 3
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.6e-13 Score=132.07 Aligned_cols=175 Identities=27% Similarity=0.405 Sum_probs=136.8
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
.+..-...||+.|++ ..+|..+..+..|+.+.|. +|.+. .+|..+.+ +..|++|||+.|+++.+| ..+
T Consensus 73 ~ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy-~n~~r-~ip~~i~~--L~~lt~l~ls~NqlS~lp-------~~l 140 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRF-SELPEEACAFVSLESLILY-HNCIR-TIPEAICN--LEALTFLDLSSNQLSHLP-------DGL 140 (722)
T ss_pred cccchhhhhcccccc-ccCchHHHHHHHHHHHHHH-hccce-ecchhhhh--hhHHHHhhhccchhhcCC-------hhh
Confidence 355566788888885 4567778888888888888 88887 67888888 888888888888888754 344
Q ss_pred ccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccE
Q 048443 126 LSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205 (486)
Q Consensus 126 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 205 (486)
+.--|+.|-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++.+.+ |+.|.+..|++... |..+..+ .|..
T Consensus 141 C~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s-lr~l~vrRn~l~~l-p~El~~L-pLi~ 215 (722)
T KOG0532|consen 141 CDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS-LRDLNVRRNHLEDL-PEELCSL-PLIR 215 (722)
T ss_pred hcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH-HHHHHHhhhhhhhC-CHHHhCC-ceee
Confidence 4455788888888888 77777888888888888888887 67777888776 88888888888644 4445544 4788
Q ss_pred EECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 206 VDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
||++.|+++ .+|-.|..|+.|++|-|.+|.+.
T Consensus 216 lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 216 LDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 888888888 77888888888888888888886
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.2e-11 Score=122.74 Aligned_cols=190 Identities=32% Similarity=0.390 Sum_probs=137.2
Q ss_pred EeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCC-CCcEEEccCCCCCCCCCCCCCCCcccc-cCc
Q 048443 52 WLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMK-NFSYLNLSKNYFPRFDQHPTVLPWTTL-STK 129 (486)
Q Consensus 52 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~ 129 (486)
.++++.|.+... ......++.++.|++. +|.++. ++..... +. +|+.|++++|.+..+| .... +++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~-~n~i~~-i~~~~~~--~~~nL~~L~l~~N~i~~l~-------~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLD-NNNITD-IPPLIGL--LKSNLKELDLSDNKIESLP-------SPLRNLPN 164 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecC-Cccccc-Ccccccc--chhhcccccccccchhhhh-------hhhhcccc
Confidence 577777775332 2344556788888888 888874 4444444 53 8888888888888753 2333 788
Q ss_pred cCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECc
Q 048443 130 IRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLS 209 (486)
Q Consensus 130 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 209 (486)
|+.|++++|+++ .+|......+.|+.|++++|++. .+|........ |+++.+++|++. ..+..+..+.++..+.+.
T Consensus 165 L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~-L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 165 LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA-LEELDLSNNSII-ELLSSLSNLKNLSGLELS 240 (394)
T ss_pred ccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhh-hhhhhhcCCcce-ecchhhhhcccccccccC
Confidence 888888888888 66666657888888888888888 56665444444 888888888643 344556777888888888
Q ss_pred CCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccC
Q 048443 210 HNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQL 260 (486)
Q Consensus 210 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~ 260 (486)
+|++. ..+..++.++++++|++++|.++...+ ++.+.+++.|+++++.
T Consensus 241 ~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 241 NNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNS 288 (394)
T ss_pred Cceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcc
Confidence 88877 446677788888888888888875444 7888888888888863
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=1e-11 Score=106.13 Aligned_cols=122 Identities=24% Similarity=0.291 Sum_probs=33.0
Q ss_pred ccCeeecccCcccccCCcccc-CCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEE
Q 048443 129 KIRHYLISKNNLTGEIPSWIC-NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVD 207 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 207 (486)
++++|+|++|.|+ .+. .++ .+.+|+.|++++|.|+. + ..+..++. |++|++++|+|+...+.....+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~-L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPR-LKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT---EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhh-hhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4455555555555 222 222 34555555555555552 2 13444444 55555555555443221112355566666
Q ss_pred CcCCccccccC-ccCcCCCCCCEEEccCCccccCCC---ccccCCCCCCEEE
Q 048443 208 LSHNLLQGKIP-KSLANCAVLEISDLRNNQINDTFP---IWLGSLLELNILV 255 (486)
Q Consensus 208 L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~ 255 (486)
+++|+|...-. ..++.+++|++|++.+|++....- ..+..+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 66665542211 234556677777777776653321 1234456666655
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=3.6e-11 Score=119.42 Aligned_cols=175 Identities=33% Similarity=0.434 Sum_probs=79.7
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCC-CCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc-
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLS-SLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT- 125 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~-~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~- 125 (486)
+.++.|++.+|.+.. ++.....+. +|+.|+++ +|++.. +|..+.. +++|+.|++++|++.++|. ..
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~-~N~i~~-l~~~~~~--l~~L~~L~l~~N~l~~l~~-------~~~ 183 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLS-DNKIES-LPSPLRN--LPNLKNLDLSFNDLSDLPK-------LLS 183 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhccccccc-ccchhh-hhhhhhc--cccccccccCCchhhhhhh-------hhh
Confidence 445555555555332 222333332 55555555 555542 2233344 5555555555555554322 22
Q ss_pred ccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccE
Q 048443 126 LSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205 (486)
Q Consensus 126 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 205 (486)
..+.|+.|++++|+++ .+|........|++|.+++|.+. ..+..+..+.. +..+.+.+|++... +..+..+++++.
T Consensus 184 ~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~-l~~l~l~~n~~~~~-~~~~~~l~~l~~ 259 (394)
T COG4886 184 NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN-LSGLELSNNKLEDL-PESIGNLSNLET 259 (394)
T ss_pred hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc-ccccccCCceeeec-cchhccccccce
Confidence 1445555555555555 34443333444555555555322 23344444443 44555555544321 333444445555
Q ss_pred EECcCCccccccCccCcCCCCCCEEEccCCccccC
Q 048443 206 VDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDT 240 (486)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 240 (486)
|++++|.++ .++. ++.+.+++.|++++|.+...
T Consensus 260 L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 260 LDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ecccccccc-cccc-ccccCccCEEeccCcccccc
Confidence 555555554 2222 44455555555555555433
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=5e-11 Score=101.91 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=42.2
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhh-hcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLG-NFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~-~~~ 176 (486)
..++++|+|++|.|+.+..+. ..+.+|+.|++++|.|+ .++ .+..+++|++|++++|+|+. +...+. .++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~------~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp 88 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLG------ATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLP 88 (175)
T ss_dssp ------------------S--------TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccccchh------hhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence 445666666666666543211 01456677777777776 332 35667777777777777763 333343 456
Q ss_pred CCCcEEEccCccccccCC-ccccCCCCccEEECcCCccccccCc----cCcCCCCCCEEEcc
Q 048443 177 GGLSVLSLQGKNFFGTTP-DTFMNGSDLRMVDLSHNLLQGKIPK----SLANCAVLEISDLR 233 (486)
Q Consensus 177 ~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~ 233 (486)
. |++|++++|+|..... ..+..+++|+.|++.+|.++.. +. .+..+|+|+.||-.
T Consensus 89 ~-L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 N-LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T---EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred c-CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 5 7777777777754322 3455678888888888887732 22 35567888888643
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-11 Score=116.20 Aligned_cols=204 Identities=20% Similarity=0.171 Sum_probs=132.6
Q ss_pred CCCCCCCEeeCcCCCCCCCCc-ccccCCCCCCeeccCCCCcccccCCc--hhccccCCCCcEEEccCCCCCCCCCCCCCC
Q 048443 45 GNLNQLQWLDLAFNNFLRELP-ASIGSLSSLERLDTFPPMKIHGNIPK--WLLNPSMKNFSYLNLSKNYFPRFDQHPTVL 121 (486)
Q Consensus 45 ~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~~n~i~~~~p~--~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~ 121 (486)
+++++|+...|.+........ .....+++++.|||+ .|-++...+. .... +++|+.|+|+.|++...-
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS-~NL~~nw~~v~~i~eq--Lp~Le~LNls~Nrl~~~~------ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLS-RNLFHNWFPVLKIAEQ--LPSLENLNLSSNRLSNFI------ 188 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecch-hhhHHhHHHHHHHHHh--cccchhcccccccccCCc------
Confidence 457888888888877433221 356688999999999 8887765442 2333 899999999999886431
Q ss_pred Cccc--ccCccCeeecccCcccc-cCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCC-ccc
Q 048443 122 PWTT--LSTKIRHYLISKNNLTG-EIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTP-DTF 197 (486)
Q Consensus 122 p~~~--~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~-~~~ 197 (486)
.... .++.|+.|.|+.|.++. .+......+|+|+.|+|..|...........-+.. |++|||++|++..... ...
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~-L~~LdLs~N~li~~~~~~~~ 267 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT-LQELDLSNNNLIDFDQGYKV 267 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH-HhhccccCCccccccccccc
Confidence 1111 16888999999998873 23334566888999999888533233333334444 8899999888864321 234
Q ss_pred cCCCCccEEECcCCcccccc-Ccc-----CcCCCCCCEEEccCCccccCC-CccccCCCCCCEEEcCc
Q 048443 198 MNGSDLRMVDLSHNLLQGKI-PKS-----LANCAVLEISDLRNNQINDTF-PIWLGSLLELNILVLIQ 258 (486)
Q Consensus 198 ~~l~~L~~L~L~~N~l~~~~-p~~-----~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~ 258 (486)
..++.|+.|+++.+.+.... |+. ....++|++|++..|++.... -..+..+++|+.|.+..
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 56788888888888877432 222 245688999999999885321 12334455555554333
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=6.7e-12 Score=117.49 Aligned_cols=162 Identities=22% Similarity=0.181 Sum_probs=101.4
Q ss_pred cCCCCCCeeccCCCCcccccCC-chhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCc
Q 048443 69 GSLSSLERLDTFPPMKIHGNIP-KWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPS 146 (486)
Q Consensus 69 ~~l~~L~~L~L~~~n~i~~~~p-~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~ 146 (486)
.++.+|+.+.|. +..+....- ..... +++++.||||+|-+..+.. +-.... +++|+.|+++.|++......
T Consensus 118 sn~kkL~~IsLd-n~~V~~~~~~~~~k~--~~~v~~LdLS~NL~~nw~~----v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLD-NYRVEDAGIEEYSKI--LPNVRDLDLSRNLFHNWFP----VLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeec-Cccccccchhhhhhh--CCcceeecchhhhHHhHHH----HHHHHHhcccchhcccccccccCCccc
Confidence 367788888887 655553222 24444 8889999999988775432 111112 78888888888887632222
Q ss_pred -cccCCCCCCEEECcCCcCccc-ccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccC--ccCc
Q 048443 147 -WICNLSSLYVLDLSDNNLSGE-LLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP--KSLA 222 (486)
Q Consensus 147 -~~~~l~~L~~L~Ls~N~i~~~-~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p--~~~~ 222 (486)
.-..+++|+.|.|+.|.++.. +...+..+++ |+.|+|..|............+..|++|||++|.+- ..+ ...+
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~ 268 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG 268 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc
Confidence 123567888888888887732 2233445665 788888877543344444455667777888777765 233 3455
Q ss_pred CCCCCCEEEccCCcccc
Q 048443 223 NCAVLEISDLRNNQIND 239 (486)
Q Consensus 223 ~l~~L~~L~L~~N~l~~ 239 (486)
.++.|..|+++.+.+.+
T Consensus 269 ~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIAS 285 (505)
T ss_pred cccchhhhhccccCcch
Confidence 67777777777776653
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=4.1e-12 Score=115.72 Aligned_cols=196 Identities=24% Similarity=0.279 Sum_probs=98.3
Q ss_pred CCCCCCCCCEeeCcCCCCCCC----CcccccCCCCCCeeccCCCCcccc----cCCc-------hhccccCCCCcEEEcc
Q 048443 43 SLGNLNQLQWLDLAFNNFLRE----LPASIGSLSSLERLDTFPPMKIHG----NIPK-------WLLNPSMKNFSYLNLS 107 (486)
Q Consensus 43 ~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~~n~i~~----~~p~-------~~~~~~l~~L~~L~Ls 107 (486)
..-.+..++.++||+|.+... +...+.+.++|+..+++ . -++| .+|+ ++.. .++|++||||
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d-~ftGR~~~Ei~e~L~~l~~aL~~--~~~L~~ldLS 100 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-D-MFTGRLKDEIPEALKMLSKALLG--CPKLQKLDLS 100 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-h-hhcCCcHHHHHHHHHHHHHHHhc--CCceeEeecc
Confidence 345566788888888886532 23445566777777775 2 2332 2222 2333 4466666666
Q ss_pred CCCCCC--CCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEc
Q 048443 108 KNYFPR--FDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSL 184 (486)
Q Consensus 108 ~N~l~~--~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L 184 (486)
.|-|.. ++.+. +.+. +..|++|.|.+|.+.-.-...++. .|..|. .++. .+.-+ .|+++..
T Consensus 101 DNA~G~~g~~~l~----~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~kk-------~~~~~-~Lrv~i~ 164 (382)
T KOG1909|consen 101 DNAFGPKGIRGLE----ELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNKK-------AASKP-KLRVFIC 164 (382)
T ss_pred ccccCccchHHHH----HHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHhc-------cCCCc-ceEEEEe
Confidence 665541 11100 0011 345555555555554111001110 011111 0100 01112 2777777
Q ss_pred cCccccccC----CccccCCCCccEEECcCCcccc----ccCccCcCCCCCCEEEccCCccccC----CCccccCCCCCC
Q 048443 185 QGKNFFGTT----PDTFMNGSDLRMVDLSHNLLQG----KIPKSLANCAVLEISDLRNNQINDT----FPIWLGSLLELN 252 (486)
Q Consensus 185 ~~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~ 252 (486)
++|++.... ...|...+.|+.+.++.|.|.. ....+|..+++|++|||.+|.++.. +...+..+++|+
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 777764332 2335556777777777777642 1234567788888888888877632 223344455566
Q ss_pred EEEcCc
Q 048443 253 ILVLIQ 258 (486)
Q Consensus 253 ~L~l~~ 258 (486)
.|++++
T Consensus 245 El~l~d 250 (382)
T KOG1909|consen 245 ELNLGD 250 (382)
T ss_pred eecccc
Confidence 665555
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=6.4e-11 Score=105.79 Aligned_cols=136 Identities=22% Similarity=0.215 Sum_probs=100.9
Q ss_pred ccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCC
Q 048443 66 ASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIP 145 (486)
Q Consensus 66 ~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~ 145 (486)
..+.....|+++||+ +|.|+ .+.++..- ++.++.|++|+|.|..+..+ ..+++|++||||+|.++ .+.
T Consensus 278 ~~~dTWq~LtelDLS-~N~I~-~iDESvKL--~Pkir~L~lS~N~i~~v~nL-------a~L~~L~~LDLS~N~Ls-~~~ 345 (490)
T KOG1259|consen 278 VSADTWQELTELDLS-GNLIT-QIDESVKL--APKLRRLILSQNRIRTVQNL-------AELPQLQLLDLSGNLLA-ECV 345 (490)
T ss_pred EecchHhhhhhcccc-ccchh-hhhhhhhh--ccceeEEeccccceeeehhh-------hhcccceEeecccchhH-hhh
Confidence 344455678888888 88887 45556655 78888888888888765331 11688888888888887 555
Q ss_pred ccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccC-CccccCCCCccEEECcCCccccc
Q 048443 146 SWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTT-PDTFMNGSDLRMVDLSHNLLQGK 216 (486)
Q Consensus 146 ~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~~ 216 (486)
+.-..+.++++|.|+.|.|.. ..+++.+-+ |..||+++|+|.... -..+++++.|+++.|.+|.+.+.
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYS-LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIET--LSGLRKLYS-LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhh--hhhhHhhhh-heeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 666677888888888888862 346677776 888999999886532 24578899999999999998843
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=6.8e-10 Score=118.21 Aligned_cols=293 Identities=24% Similarity=0.230 Sum_probs=141.9
Q ss_pred CCCCEeeCcCCC--CCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 48 NQLQWLDLAFNN--FLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 48 ~~L~~L~Ls~n~--~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
++|+.|-+..|. +.......|..++.|++|||+ +|.-.+.+|..++. +-+|++|++++..+.++ |..+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs-~~~~l~~LP~~I~~--Li~LryL~L~~t~I~~L-------P~~l 614 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS-GNSSLSKLPSSIGE--LVHLRYLDLSDTGISHL-------PSGL 614 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECC-CCCccCcCChHHhh--hhhhhcccccCCCcccc-------chHH
Confidence 356666666664 333333445566666666666 55555566666666 66666666666666653 3344
Q ss_pred c-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcC--cccccchhhhcCCCCcEEEccCccccccCCccccCCCC
Q 048443 126 L-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNL--SGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSD 202 (486)
Q Consensus 126 ~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i--~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 202 (486)
. +..|.+|++..+.-...+|.....+++|++|.+-.-.. ....-..+..+.. |+.+....... .+-..+..+..
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~-L~~ls~~~~s~--~~~e~l~~~~~ 691 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH-LENLSITISSV--LLLEDLLGMTR 691 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc-hhhheeecchh--HhHhhhhhhHH
Confidence 4 56666666666654434455555566666666644321 1111122222222 33333322111 00011111122
Q ss_pred cc----EEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccc
Q 048443 203 LR----MVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAM 278 (486)
Q Consensus 203 L~----~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L 278 (486)
|. .+.+.++... ..+..+..+.+|+.|.+.++.+......+......+. .|..+..+
T Consensus 692 L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~------------------~f~~l~~~ 752 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL------------------CFPNLSKV 752 (889)
T ss_pred HHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhh------------------hHHHHHHH
Confidence 21 2222222222 2233455566666666666655432222211111110 01111111
Q ss_pred cccccccchhccccccccccccccccCCCCcceEEeecCCCccccCcccCcccEEEcccccccccCccchhccCCCCeee
Q 048443 279 KFANSSQLRYMENFLSSYFSFDFYRYFPQNDYSITMSNEGQMMTHDKIPDILKGIILSSNRFDGEMPTSIANLKGLQVLG 358 (486)
Q Consensus 279 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 358 (486)
........+ ...+...+++|+.|.+.++...+.+.+....+..++.+.
T Consensus 753 ~~~~~~~~r--------------------------------~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i 800 (889)
T KOG4658|consen 753 SILNCHMLR--------------------------------DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELI 800 (889)
T ss_pred Hhhcccccc--------------------------------ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEE
Confidence 000000000 001112358899999998887767766677777788777
Q ss_pred CCCcccCcc-CchhccCCCCCCEEeCCCCCCCCCCEEeccCCccccCCCC
Q 048443 359 LASNNLQGH-IPSCLGSLTNLESLDLSKNRLTFLEFFNATHNNLTGPIPQ 407 (486)
Q Consensus 359 Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~L~~L~ls~N~l~~~~p~ 407 (486)
+..+.+.+. .-...++++++..+.+++ ..++.+.+..++-.+..|.
T Consensus 801 ~~f~~~~~l~~~~~l~~l~~i~~~~l~~---~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 801 LPFNKLEGLRMLCSLGGLPQLYWLPLSF---LKLEELIVEECPKLGKLPL 847 (889)
T ss_pred ecccccccceeeecCCCCceeEecccCc---cchhheehhcCcccccCcc
Confidence 777777755 234455556555555553 3366666666554444443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=8.5e-10 Score=77.54 Aligned_cols=60 Identities=38% Similarity=0.531 Sum_probs=55.7
Q ss_pred CcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 328 DILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
++|++|++++|+++...+..|..+++|++|++++|.+++..+.+|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 469999999999997777899999999999999999998888899999999999999986
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=2.2e-10 Score=113.98 Aligned_cols=193 Identities=27% Similarity=0.268 Sum_probs=114.8
Q ss_pred CCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCccc
Q 048443 46 NLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTT 125 (486)
Q Consensus 46 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~ 125 (486)
.+..++.+.+..|.+.. +-..+..+++|+.|++. .|+|..+.. .+.. +++|++|++++|.|+.+..+..
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~-~n~i~~i~~-~l~~--~~~L~~L~ls~N~I~~i~~l~~------ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLY-DNKIEKIEN-LLSS--LVNLQVLDLSFNKITKLEGLST------ 138 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeecc-ccchhhccc-chhh--hhcchheeccccccccccchhh------
Confidence 45566666677777544 33446677788888887 777775443 1334 7788888888888777643211
Q ss_pred ccCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccE
Q 048443 126 LSTKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205 (486)
Q Consensus 126 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 205 (486)
++.|+.|++++|.|+. + ..+..++.|+.+++++|++....+.....+.. ++.+++.+|.+.... .+..+..+..
T Consensus 139 -l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~-l~~l~l~~n~i~~i~--~~~~~~~l~~ 212 (414)
T KOG0531|consen 139 -LTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIVDIENDELSELIS-LEELDLGGNSIREIE--GLDLLKKLVL 212 (414)
T ss_pred -ccchhhheeccCcchh-c-cCCccchhhhcccCCcchhhhhhhhhhhhccc-hHHHhccCCchhccc--chHHHHHHHH
Confidence 4567888888888772 2 23555777888888888777443310344554 777777777775432 2334445555
Q ss_pred EECcCCccccccCccCcCCCC--CCEEEccCCccccCCCccccCCCCCCEEEcCc
Q 048443 206 VDLSHNLLQGKIPKSLANCAV--LEISDLRNNQINDTFPIWLGSLLELNILVLIQ 258 (486)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 258 (486)
+++..|.++..-+ +..+.. |+.+++++|++... +..+..+..+..|++.+
T Consensus 213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSS 264 (414)
T ss_pred hhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhh
Confidence 5777777763222 222333 67777777776532 23334444444444444
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.1e-09 Score=76.92 Aligned_cols=61 Identities=33% Similarity=0.434 Sum_probs=53.3
Q ss_pred CCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCC
Q 048443 48 NQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYF 111 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l 111 (486)
++|++|++++|++..+.+..|.++++|++|+++ +|.++...|..|.+ +++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~~~f~~--l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLS-NNNLTSIPPDAFSN--LPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEET-SSSESEEETTTTTT--STTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEcc-CCccCccCHHHHcC--CCCCCEEeCcCCcC
Confidence 578899999999888877889999999999999 99999888888888 89999999998864
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.81 E-value=2.9e-10 Score=103.80 Aligned_cols=188 Identities=20% Similarity=0.191 Sum_probs=95.0
Q ss_pred CCCCCCCCEeeCcCCCCCCCCccc----ccCCCCCCeeccCCCCcccccCCch-------------hccccCCCCcEEEc
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPAS----IGSLSSLERLDTFPPMKIHGNIPKW-------------LLNPSMKNFSYLNL 106 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~----~~~l~~L~~L~L~~~n~i~~~~p~~-------------~~~~~l~~L~~L~L 106 (486)
+..+++|++||||.|.+....+.. +..+..|++|.|. +|.+...-... ... -+.|+++..
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~-N~Glg~~ag~~l~~al~~l~~~kk~~~--~~~Lrv~i~ 164 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN-NCGLGPEAGGRLGRALFELAVNKKAAS--KPKLRVFIC 164 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh-cCCCChhHHHHHHHHHHHHHHHhccCC--CcceEEEEe
Confidence 444567777777777765444332 3456677777776 66665221111 122 456666666
Q ss_pred cCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccc----cCCccccCCCCCCEEECcCCcCccc----ccchhhhcCC
Q 048443 107 SKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTG----EIPSWICNLSSLYVLDLSDNNLSGE----LLQCLGNFSG 177 (486)
Q Consensus 107 s~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~l~~~~~ 177 (486)
+.|++..-+... +...+. .+.|+++.++.|.|.. .+..+|..+++|+.|||.+|-++.. +...+..++.
T Consensus 165 ~rNrlen~ga~~--~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 165 GRNRLENGGATA--LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred eccccccccHHH--HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 666665332200 111122 4566666666666542 1122455566666666666665531 2223344443
Q ss_pred CCcEEEccCccccccCCccc-----cCCCCccEEECcCCccccc----cCccCcCCCCCCEEEccCCcc
Q 048443 178 GLSVLSLQGKNFFGTTPDTF-----MNGSDLRMVDLSHNLLQGK----IPKSLANCAVLEISDLRNNQI 237 (486)
Q Consensus 178 ~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l 237 (486)
|+++++++|.+......+| ...++|+.|.+.+|.++.. +.......+.|+.|+|++|.+
T Consensus 243 -L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 -LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6666666666543322222 1245566666666665421 112233355566666666665
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.79 E-value=1.3e-09 Score=108.56 Aligned_cols=180 Identities=26% Similarity=0.204 Sum_probs=139.2
Q ss_pred CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCC
Q 048443 40 IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPT 119 (486)
Q Consensus 40 ~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~ 119 (486)
+-..+..+++|..|++..|+|..+.. .+..+++|++|+++ +|.|+...+-.. ++.|+.|++++|.|..++.+.
T Consensus 87 ~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls-~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~- 159 (414)
T KOG0531|consen 87 ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLS-FNKITKLEGLST----LTLLKELNLSGNLISDISGLE- 159 (414)
T ss_pred hhcccccccceeeeeccccchhhccc-chhhhhcchheecc-ccccccccchhh----ccchhhheeccCcchhccCCc-
Confidence 34458889999999999999876543 37789999999999 999997665444 778999999999999864411
Q ss_pred CCCcccccCccCeeecccCcccccCCcc-ccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCcccc
Q 048443 120 VLPWTTLSTKIRHYLISKNNLTGEIPSW-ICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM 198 (486)
Q Consensus 120 l~p~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~ 198 (486)
.+..|+.+++++|+++...+ . ...+.+++.+++.+|.+... ..+..... +..+++..|.++...+- .
T Consensus 160 ------~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~-l~~~~l~~n~i~~~~~l--~ 227 (414)
T KOG0531|consen 160 ------SLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKK-LVLLSLLDNKISKLEGL--N 227 (414)
T ss_pred ------cchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHH-HHHhhcccccceeccCc--c
Confidence 17899999999999995443 2 57889999999999998743 33333333 66678899988755432 2
Q ss_pred CCC--CccEEECcCCccccccCccCcCCCCCCEEEccCCcccc
Q 048443 199 NGS--DLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 199 ~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
.+. .|+.+++++|.+. ..+..+..+..+..+++.+|.+..
T Consensus 228 ~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 228 ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred cchhHHHHHHhcccCccc-cccccccccccccccchhhccccc
Confidence 233 3899999999998 444667788999999999998863
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=5.6e-10 Score=110.91 Aligned_cols=178 Identities=22% Similarity=0.187 Sum_probs=118.0
Q ss_pred CcCCCCCCCCCEeeCcCCCCCCCCcccccCC-CCCCeeccCCCCccc----------ccCCchhccccCCCCcEEEccCC
Q 048443 41 PPSLGNLNQLQWLDLAFNNFLRELPASIGSL-SSLERLDTFPPMKIH----------GNIPKWLLNPSMKNFSYLNLSKN 109 (486)
Q Consensus 41 p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~L~~L~L~~~n~i~----------~~~p~~~~~~~l~~L~~L~Ls~N 109 (486)
|-++..+..|++|.|.++.+... ..+..+ .+|++|.. +|.++ +.+..++. ...|.+.+.++|
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC--~~Sl~Al~~v~ascggd~~ns~~---Wn~L~~a~fsyN 174 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC--HNSLDALRHVFASCGGDISNSPV---WNKLATASFSYN 174 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh--hccHHHHHHHHHHhccccccchh---hhhHhhhhcchh
Confidence 45677889999999999987642 222222 24555543 23322 11111111 346777888888
Q ss_pred CCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCcc
Q 048443 110 YFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKN 188 (486)
Q Consensus 110 ~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~ 188 (486)
.+..+ ..... ++.++.|+|++|+++. .. .+..+++|++|||++|.+. .+|..-..-.. |..|.+++|.
T Consensus 175 ~L~~m-------D~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 175 RLVLM-------DESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred hHHhH-------HHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccH
Confidence 88753 33444 7889999999999883 33 7888999999999999987 45543222223 8889999998
Q ss_pred ccccCCccccCCCCccEEECcCCccccccC-ccCcCCCCCCEEEccCCccc
Q 048443 189 FFGTTPDTFMNGSDLRMVDLSHNLLQGKIP-KSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 189 i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~ 238 (486)
++... .+.++.+|+.||+++|-+.+.-. ..++.+..|..|+|.+|++.
T Consensus 244 l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 244 LTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 86542 46788889999999998764211 22455677888888888864
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=2.1e-09 Score=106.90 Aligned_cols=127 Identities=23% Similarity=0.161 Sum_probs=97.5
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
-..|.+.+.++|.++ .+..++.-++.|+.|+|++|+++... .+..++. |++|||+.|.+..+.--...++. |+.|
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~-LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPK-LKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhccc-ccccccccchhccccccchhhhh-heee
Confidence 356888889999988 67778888899999999999998433 7788887 99999999999755433333444 9999
Q ss_pred ECcCCccccccCccCcCCCCCCEEEccCCccccCCC-ccccCCCCCCEEEcCccC
Q 048443 207 DLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFP-IWLGSLLELNILVLIQQL 260 (486)
Q Consensus 207 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~n~ 260 (486)
.+++|.++.. ..+.++.+|+.||+++|-+.+.-. ..++.+..|+.|.|.+|-
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999998743 347788999999999998875422 234566778888888864
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.47 E-value=1.5e-07 Score=100.59 Aligned_cols=78 Identities=28% Similarity=0.340 Sum_probs=36.1
Q ss_pred CcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCCCCCCEEEccCCccccCCCccccCCCCCCEEEcC
Q 048443 179 LSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANCAVLEISDLRNNQINDTFPIWLGSLLELNILVLI 257 (486)
Q Consensus 179 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 257 (486)
|..|||++|.-.+.+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+.....+|.....+.+|++|.+.
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 444444444444444444444444444444444444 444444444444555444444333333334444444444443
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=6.9e-07 Score=80.33 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=33.3
Q ss_pred cCcccEEEcccccccccC-ccchhccCCCCeeeCCCcccCccC-chhccCCCCCCEEeCCCCC
Q 048443 327 PDILKGIILSSNRFDGEM-PTSIANLKGLQVLGLASNNLQGHI-PSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~ 387 (486)
++++..+.+..|.+...- -..+..++.+..|+|+.|+|.+-. -+++..+++|..|.+++|+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence 455666666666554321 123444555566677777665211 1245566666666666666
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=4.7e-06 Score=70.97 Aligned_cols=103 Identities=26% Similarity=0.287 Sum_probs=56.8
Q ss_pred CCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccC-ccCcCCCCCCEEE
Q 048443 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIP-KSLANCAVLEISD 231 (486)
Q Consensus 153 ~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~ 231 (486)
....+||++|.+.. ...|..++. |.+|.+++|+|+.+.|..-.-+++|+.|.|.+|.|..... ..+..|+.|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~r-L~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPR-LHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccc-cceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 44455555555531 123444444 5566666666655555443445566666666666542111 2255667777777
Q ss_pred ccCCccccCCC---ccccCCCCCCEEEcCc
Q 048443 232 LRNNQINDTFP---IWLGSLLELNILVLIQ 258 (486)
Q Consensus 232 L~~N~l~~~~~---~~~~~l~~L~~L~l~~ 258 (486)
+-+|+.+...- ..+..+++|+.||+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777653322 2456677777777665
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=5e-08 Score=77.47 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=25.1
Q ss_pred CCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccc
Q 048443 153 SLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQ 214 (486)
Q Consensus 153 ~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (486)
.+++|++++|.|+ .+|..+..++. |+.++++.|.+.. .|..+..+.++-.|+..+|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~a-Lr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPA-LRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHH-hhhcccccCcccc-chHHHHHHHhHHHhcCCCCccc
Confidence 4444444444444 34444444443 4444444444432 2233333444444444444443
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.3e-07 Score=84.85 Aligned_cols=215 Identities=19% Similarity=0.193 Sum_probs=112.8
Q ss_pred CCEEECcCCcCcccccchhhhcCC-CCcEEEccCcccccc-CCccccCC-CCccEEECcCCccccc-cCccCcCCCCCCE
Q 048443 154 LYVLDLSDNNLSGELLQCLGNFSG-GLSVLSLQGKNFFGT-TPDTFMNG-SDLRMVDLSHNLLQGK-IPKSLANCAVLEI 229 (486)
Q Consensus 154 L~~L~Ls~N~i~~~~~~~l~~~~~-~L~~L~L~~n~i~~~-~~~~~~~l-~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~ 229 (486)
-+++|+.+-.|. |..++.+.. ....+.+..-.+... ..+.+.-+ +.|++|||+.-.|+.. +-..+..|.+|+.
T Consensus 138 W~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 138 WQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 356666665554 444444332 133444443222211 11112211 3577788877776532 2233566777888
Q ss_pred EEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccccccccccchhccccccccccccccccCCCCc
Q 048443 230 SDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAMKFANSSQLRYMENFLSSYFSFDFYRYFPQND 309 (486)
Q Consensus 230 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (486)
|.+.++++++.+...+++-.+|+.|+++.... +...--.-++.+++.|..++++-+.......
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG-~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V---------------- 277 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG-FTENALQLLLSSCSRLDELNLSWCFLFTEKV---------------- 277 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccc-cchhHHHHHHHhhhhHhhcCchHhhccchhh----------------
Confidence 88888888776667777777888887766210 1111122346677777777666552211110
Q ss_pred ceEEeecCCCccccCcccCcccEEEccccccc---ccCccchhccCCCCeeeCCCcc-cCccCchhccCCCCCCEEeCCC
Q 048443 310 YSITMSNEGQMMTHDKIPDILKGIILSSNRFD---GEMPTSIANLKGLQVLGLASNN-LQGHIPSCLGSLTNLESLDLSK 385 (486)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~ 385 (486)
......+-+.++.|+|+|+.=. ..+..-.+..++|..||||+|- ++......|..++.|++|.++.
T Consensus 278 ----------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsR 347 (419)
T KOG2120|consen 278 ----------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSR 347 (419)
T ss_pred ----------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhh
Confidence 0011112245666766665321 1222223556777777777654 3333334556677777777777
Q ss_pred CC------------CCCCCEEeccC
Q 048443 386 NR------------LTFLEFFNATH 398 (486)
Q Consensus 386 N~------------l~~L~~L~ls~ 398 (486)
|. .++|.+||+.+
T Consensus 348 CY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 348 CYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hcCCChHHeeeeccCcceEEEEecc
Confidence 65 55666776554
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=1.6e-07 Score=83.32 Aligned_cols=175 Identities=22% Similarity=0.244 Sum_probs=81.0
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcc----cccCCCCCCeeccCCCCcccccCC-----------chhccccCCCCcEEEccC
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPA----SIGSLSSLERLDTFPPMKIHGNIP-----------KWLLNPSMKNFSYLNLSK 108 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~----~~~~l~~L~~L~L~~~n~i~~~~p-----------~~~~~~~l~~L~~L~Ls~ 108 (486)
+..+..++.+|||+|.|...-.. .+.+-.+|+..+++ . -++|... .++.. ++.|+..+||.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfs-d-~ftgr~kde~~~~L~~Ll~aLlk--cp~l~~v~LSD 101 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS-D-AFTGRDKDELYSNLVMLLKALLK--CPRLQKVDLSD 101 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehh-h-hhhcccHHHHHHHHHHHHHHHhc--CCcceeeeccc
Confidence 34467788888888887654333 34455667776664 2 2232221 22333 55666666666
Q ss_pred CCCCC-CCCCCCCCCcccc-cCccCeeecccCcccccCCc-cccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEcc
Q 048443 109 NYFPR-FDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPS-WICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQ 185 (486)
Q Consensus 109 N~l~~-~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~ 185 (486)
|.|.. .|.. +.+.+. .+.|.+|.+++|.+. .+.+ -++. .|. +|..|+ ...+-+. |+.....
T Consensus 102 NAfg~~~~e~---L~d~is~~t~l~HL~l~NnGlG-p~aG~rigk--al~--~la~nK-------Kaa~kp~-Le~vicg 165 (388)
T COG5238 102 NAFGSEFPEE---LGDLISSSTDLVHLKLNNNGLG-PIAGGRIGK--ALF--HLAYNK-------KAADKPK-LEVVICG 165 (388)
T ss_pred cccCcccchH---HHHHHhcCCCceeEEeecCCCC-ccchhHHHH--HHH--HHHHHh-------hhccCCC-ceEEEec
Confidence 65541 1110 001111 344555555555443 1111 0000 000 000000 0112223 6666666
Q ss_pred CccccccCC----ccccCCCCccEEECcCCccccc-----cCccCcCCCCCCEEEccCCccc
Q 048443 186 GKNFFGTTP----DTFMNGSDLRMVDLSHNLLQGK-----IPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 186 ~n~i~~~~~----~~~~~l~~L~~L~L~~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
.|++..-.. ..+..-..|+++.+..|.|... .-..+..+.+|+.||+.+|.++
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 666542211 1122334677777777766421 1112445677788888887776
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=2.6e-06 Score=54.73 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=21.3
Q ss_pred cccEEEcccccccccCccchhccCCCCeeeCCCcccC
Q 048443 329 ILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365 (486)
Q Consensus 329 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 365 (486)
+|++|++++|+|+ .+|..++++++|++|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 44545666666666666666666
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=1e-05 Score=69.04 Aligned_cols=104 Identities=20% Similarity=0.174 Sum_probs=57.9
Q ss_pred CCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCCCCCCCCCCCCCCcccccC
Q 048443 49 QLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTLST 128 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~~~ 128 (486)
+...+||++|.+... ..|..+++|.+|.+. +|+|+.+-|.--.. +++|+.|.|.+|.|.++.. +.....++
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~-nNrIt~I~p~L~~~--~p~l~~L~LtnNsi~~l~d----l~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLN-NNRITRIDPDLDTF--LPNLKTLILTNNSIQELGD----LDPLASCP 113 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEec-CCcceeeccchhhh--ccccceEEecCcchhhhhh----cchhccCC
Confidence 455666776665433 345666667777776 66776655544444 6666777777766665433 11112256
Q ss_pred ccCeeecccCcccccCC---ccccCCCCCCEEECcC
Q 048443 129 KIRHYLISKNNLTGEIP---SWICNLSSLYVLDLSD 161 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~ 161 (486)
+|++|.+-+|.++..-- -.+..+++|++||+..
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66666666666652110 1244556666666544
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=4.5e-06 Score=53.63 Aligned_cols=40 Identities=38% Similarity=0.619 Sum_probs=32.8
Q ss_pred CCCCeeeCCCcccCccCchhccCCCCCCEEeCCCCCCCCCC
Q 048443 352 KGLQVLGLASNNLQGHIPSCLGSLTNLESLDLSKNRLTFLE 392 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~L~ 392 (486)
++|++|++++|+|+ .+|..++++++|++|++++|+++.+.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47999999999999 56667999999999999999877543
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.4e-07 Score=83.28 Aligned_cols=177 Identities=20% Similarity=0.156 Sum_probs=111.0
Q ss_pred CCCEeeCcCCCCCCCC-cccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCCC-CCCCCCCCCCCCcccc
Q 048443 49 QLQWLDLAFNNFLREL-PASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKNY-FPRFDQHPTVLPWTTL 126 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~p~~~~ 126 (486)
.|++||||+..|+..- -.-+..+.+|+.|.+. ++++.+.+...++. -.+|+.||++.+. +++.. ..-.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlE-g~~LdD~I~~~iAk--N~~L~~lnlsm~sG~t~n~-----~~ll~~ 257 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLE-GLRLDDPIVNTIAK--NSNLVRLNLSMCSGFTENA-----LQLLLS 257 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccc-ccccCcHHHHHHhc--cccceeeccccccccchhH-----HHHHHH
Confidence 4888888887765322 2335677888888888 88888877777877 7888888888753 44321 001122
Q ss_pred -cCccCeeecccCcccccCCc-cccC-CCCCCEEECcCCcC--c-ccccchhhhcCCCCcEEEccCccc-cccCCccccC
Q 048443 127 -STKIRHYLISKNNLTGEIPS-WICN-LSSLYVLDLSDNNL--S-GELLQCLGNFSGGLSVLSLQGKNF-FGTTPDTFMN 199 (486)
Q Consensus 127 -~~~L~~L~Ls~n~l~~~~~~-~~~~-l~~L~~L~Ls~N~i--~-~~~~~~l~~~~~~L~~L~L~~n~i-~~~~~~~~~~ 199 (486)
++.|.+|+++-|.+....-. .+.. -+.|+.|++++.+- . ..+..-....+. |..|||++|.. +......|..
T Consensus 258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~-l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc-eeeeccccccccCchHHHHHHh
Confidence 67888888888877642211 1111 24677788877531 1 111112233444 88888887653 3223334667
Q ss_pred CCCccEEECcCCccccccCcc---CcCCCCCCEEEccCCc
Q 048443 200 GSDLRMVDLSHNLLQGKIPKS---LANCAVLEISDLRNNQ 236 (486)
Q Consensus 200 l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~ 236 (486)
++.|++|.++.|.. ++|.. +...++|.+|++.++-
T Consensus 337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 88888888888864 44543 4567888888887653
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=3.8e-07 Score=72.56 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=75.6
Q ss_pred ccCeeecccCcccccCCcccc---CCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccE
Q 048443 129 KIRHYLISKNNLTGEIPSWIC---NLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRM 205 (486)
Q Consensus 129 ~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 205 (486)
.+..++|+.|++- .++++.. ...+|+..+|++|.+. ..|..|......++.+++++|.|+. +|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhh
Confidence 3556677777765 4555443 4456777788888888 5566655443338888888888864 4555888888888
Q ss_pred EECcCCccccccCccCcCCCCCCEEEccCCccc
Q 048443 206 VDLSHNLLQGKIPKSLANCAVLEISDLRNNQIN 238 (486)
Q Consensus 206 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 238 (486)
|+++.|.+. ..|..+..+.++-+|+..+|.+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 888888887 66777777888888888887765
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=4.1e-05 Score=73.95 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=25.6
Q ss_pred cCcccEEEcccccccccCccchhccCCCCeeeCCCcc
Q 048443 327 PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNN 363 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 363 (486)
|++|+.|++++|... ..|..+. .+|+.|+++.+.
T Consensus 155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 467999999998876 4555444 589999998774
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=1.4e-06 Score=78.38 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=18.9
Q ss_pred ccEEEcccccccc-cCccchhccCCCCeeeCCCcccCc
Q 048443 330 LKGIILSSNRFDG-EMPTSIANLKGLQVLGLASNNLQG 366 (486)
Q Consensus 330 L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 366 (486)
+.-|.|+.|+|.. ..-+.+.+++.|..|-+++|.+.+
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 3344455555542 112235556666666666666653
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=4.6e-05 Score=73.57 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=89.3
Q ss_pred CCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCCcccccCCchhccccCCCCcEEEccCC-CCCCCCCCCCCCC
Q 048443 44 LGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPMKIHGNIPKWLLNPSMKNFSYLNLSKN-YFPRFDQHPTVLP 122 (486)
Q Consensus 44 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~l~p 122 (486)
+..+.+++.|++++|.+.. +| .+ -.+|++|.+++.+.+ ..+|+.+ .++|++|++++| .+..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP-~L--P~sLtsL~Lsnc~nL-tsLP~~L----P~nLe~L~Ls~Cs~L~sLP------- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LP-VL--PNELTEITIENCNNL-TTLPGSI----PEGLEKLTVCHCPEISGLP------- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cC-CC--CCCCcEEEccCCCCc-ccCCchh----hhhhhheEccCcccccccc-------
Confidence 4456899999999997554 35 11 246999999833555 4667655 568999999998 666543
Q ss_pred cccccCccCeeecccCcccc--cCCccccCCCCCCEEECcCCc-Cc-ccccchhhhcCCCCcEEEccCccccccCCcccc
Q 048443 123 WTTLSTKIRHYLISKNNLTG--EIPSWICNLSSLYVLDLSDNN-LS-GELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFM 198 (486)
Q Consensus 123 ~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~-i~-~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~ 198 (486)
.+|+.|+++.+.... .+|. +|+.|.+.+++ .. ...| ..+|.+|++|++++|.... .|..+.
T Consensus 112 -----~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~~LP 176 (426)
T PRK15386 112 -----ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPEKLP 176 (426)
T ss_pred -----cccceEEeCCCCCcccccCcc------hHhheeccccccccccccc---cccCCcccEEEecCCCccc-Cccccc
Confidence 468888888776541 2332 56677775433 11 0111 1244569999999888653 344343
Q ss_pred CCCCccEEECcCCc
Q 048443 199 NGSDLRMVDLSHNL 212 (486)
Q Consensus 199 ~l~~L~~L~L~~N~ 212 (486)
.+|+.|+++.+.
T Consensus 177 --~SLk~L~ls~n~ 188 (426)
T PRK15386 177 --ESLQSITLHIEQ 188 (426)
T ss_pred --ccCcEEEecccc
Confidence 589999998774
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.59 E-value=1.9e-05 Score=70.46 Aligned_cols=60 Identities=22% Similarity=0.145 Sum_probs=30.4
Q ss_pred CcccEEEcccccccccC----ccchhccCCCCeeeCCCcccCccCchhc----c--CCCCCCEEeCCCCC
Q 048443 328 DILKGIILSSNRFDGEM----PTSIANLKGLQVLGLASNNLQGHIPSCL----G--SLTNLESLDLSKNR 387 (486)
Q Consensus 328 ~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~--~l~~L~~L~Ls~N~ 387 (486)
.+|+.|||..|-++... ...+...+.|++|.+.+|-++..-..++ . ..++|..|-..+|.
T Consensus 214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 45666666666665322 2223444556666666666654333221 1 13455555555555
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.59 E-value=0.00023 Score=58.26 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=27.1
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
+++|+.+.+.. .+......+|.++++|+.+++..+ +......+|..... ++.+.+.+ .+.......|..+++++.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~-l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKS-LESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT--EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccc-cccccccc-ccccccccccccccccccc
Confidence 34455555443 333333444455545555555443 33222233333333 44444433 2222333334444444444
Q ss_pred ECcC
Q 048443 207 DLSH 210 (486)
Q Consensus 207 ~L~~ 210 (486)
++..
T Consensus 87 ~~~~ 90 (129)
T PF13306_consen 87 DIPS 90 (129)
T ss_dssp EETT
T ss_pred ccCc
Confidence 4433
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=8.4e-05 Score=66.24 Aligned_cols=124 Identities=19% Similarity=0.137 Sum_probs=72.7
Q ss_pred hhhhccCCccccc--CCcCCCCCCCCCEeeCcCCCCCCCCcccccCCCCCCeeccCCCC--cccccCCchhccccCCCCc
Q 048443 27 LDRLQRLSDFSGQ--IPPSLGNLNQLQWLDLAFNNFLRELPASIGSLSSLERLDTFPPM--KIHGNIPKWLLNPSMKNFS 102 (486)
Q Consensus 27 l~~L~~~n~~~~~--~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~~n--~i~~~~p~~~~~~~l~~L~ 102 (486)
++.+...|.+++. +..-.-.+..|+.|++.+..++.. ..|..+++|++|+++ .| .+.+.++.-... +++|+
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~ls-dn~~~~~~~l~vl~e~--~P~l~ 94 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELS-DNYRRVSGGLEVLAEK--APNLK 94 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhccc-CCcccccccceehhhh--CCcee
Confidence 3334333444433 555566667777777777665543 346677888888888 88 555555555555 78888
Q ss_pred EEEccCCCCCCCCCCCCCCCcccccCccCeeecccCcccccCC---ccccCCCCCCEEEC
Q 048443 103 YLNLSKNYFPRFDQHPTVLPWTTLSTKIRHYLISKNNLTGEIP---SWICNLSSLYVLDL 159 (486)
Q Consensus 103 ~L~Ls~N~l~~~~~l~~l~p~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L 159 (486)
+|+++.|+|..+.. ++..-.+.+|..|++.+|..+.... ..|.-+++|++||-
T Consensus 95 ~l~ls~Nki~~lst----l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 95 VLNLSGNKIKDLST----LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred EEeecCCccccccc----cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 88888888764322 1111114666777777776553111 12344555555443
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.46 E-value=0.00059 Score=55.81 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=59.4
Q ss_pred CccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEEECcCCccccccCccCcCC
Q 048443 145 PSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKSLANC 224 (486)
Q Consensus 145 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 224 (486)
..+|.++.+|+.+.+.. .+......+|..... |+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~-l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTS-LKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT--SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhcccccc-ccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 34566777777777764 455444455665555 777777664 5555566677776777777765 3333444566667
Q ss_pred CCCCEEEccCCccccCCCccccCCCCCCEEEcCccCCCccccCChhhhhccccc
Q 048443 225 AVLEISDLRNNQINDTFPIWLGSLLELNILVLIQQLPCFMGKLPSKYFQCWNAM 278 (486)
Q Consensus 225 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ip~~~~~~l~~L 278 (486)
++|+.+++..+ +.......|... .++.+.+.. ....++...|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~----~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS----NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT----B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC----CccEECCccccccccC
Confidence 77777777654 444555566666 777777654 3344566666666555
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.27 E-value=0.00016 Score=75.78 Aligned_cols=134 Identities=20% Similarity=0.251 Sum_probs=77.6
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc--cCccCeeecccCccccc-CCccccCCCCCCEEECcCCcCcccccchhhh
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL--STKIRHYLISKNNLTGE-IPSWICNLSSLYVLDLSDNNLSGELLQCLGN 174 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 174 (486)
-.+|++||+++...-.-. .|..++ +|.|++|.+++-.+... ......++++|..||+|+.+++.. .++..
T Consensus 121 r~nL~~LdI~G~~~~s~~-----W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNG-----WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhcc-----HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhc
Confidence 356777777775432100 111223 67777777777665421 223345677777888887777632 56667
Q ss_pred cCCCCcEEEccCccccc-cCCccccCCCCccEEECcCCcccccc------CccCcCCCCCCEEEccCCcccc
Q 048443 175 FSGGLSVLSLQGKNFFG-TTPDTFMNGSDLRMVDLSHNLLQGKI------PKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 175 ~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~~~------p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
+++ |+.|.+.+=.+.. ..-..+..+++|+.||+|........ -+.-..+|+|+.||.+++.+.+
T Consensus 194 Lkn-Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 194 LKN-LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccc-HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 766 7777776655432 11123456777888888776543211 0112347788888888777654
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00015 Score=75.96 Aligned_cols=75 Identities=24% Similarity=0.380 Sum_probs=58.4
Q ss_pred cCcccEEEcccccccccCccchhccCCCCeeeCCCcccCc-cCchhccCCCCCCEEeCCCCC-----------------C
Q 048443 327 PDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQG-HIPSCLGSLTNLESLDLSKNR-----------------L 388 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~-----------------l 388 (486)
+++|..||+|+.+++. + ..++++++|+.|.+.+=.+.. ..-..+.++++|+.||+|..+ +
T Consensus 172 FpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L 249 (699)
T KOG3665|consen 172 FPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL 249 (699)
T ss_pred cCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence 4789999999999883 3 568889999999888877763 112245689999999999877 8
Q ss_pred CCCCEEeccCCcccc
Q 048443 389 TFLEFFNATHNNLTG 403 (486)
Q Consensus 389 ~~L~~L~ls~N~l~~ 403 (486)
+.|+.||.|+..+.+
T Consensus 250 peLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 250 PELRFLDCSGTDINE 264 (699)
T ss_pred ccccEEecCCcchhH
Confidence 899999999876653
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00056 Score=61.11 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=50.5
Q ss_pred CCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCc--cccccCCccccCCCCccEEECcCCccccccCcc-
Q 048443 144 IPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGK--NFFGTTPDTFMNGSDLRMVDLSHNLLQGKIPKS- 220 (486)
Q Consensus 144 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~- 220 (486)
+......+..|+.|++.+..++. -..+..+++ |+.|.++.| ++.+.++.....+++|++|++++|++.. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~-LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl 109 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPK-LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTL 109 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcch-hhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cccc
Confidence 44444555666666666666552 123445555 777777777 4444444444445777777777776652 222
Q ss_pred --CcCCCCCCEEEccCCccc
Q 048443 221 --LANCAVLEISDLRNNQIN 238 (486)
Q Consensus 221 --~~~l~~L~~L~L~~N~l~ 238 (486)
+..+.+|..|++.+|..+
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcchhhhhcccCCcc
Confidence 334455666666666544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00026 Score=63.59 Aligned_cols=82 Identities=21% Similarity=0.181 Sum_probs=63.2
Q ss_pred eEEeecCCCccccCc-ccCcccEEEcccccccccCccchhccCCCCeeeCCCcccCccCch--hccCCCCCCEEeCCCCC
Q 048443 311 SITMSNEGQMMTHDK-IPDILKGIILSSNRFDGEMPTSIANLKGLQVLGLASNNLQGHIPS--CLGSLTNLESLDLSKNR 387 (486)
Q Consensus 311 ~l~~~~~~~~~~~~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~ 387 (486)
.+++.++++.....+ .++.|++|.||-|.|+..- .+..+++|++|+|..|.|. .+.+ .+.++++|+.|-|..|+
T Consensus 23 KLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 23 KLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhcccCCCccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCC
Confidence 344555555444332 3789999999999998433 3789999999999999998 4443 56789999999999999
Q ss_pred ----------------CCCCCEEe
Q 048443 388 ----------------LTFLEFFN 395 (486)
Q Consensus 388 ----------------l~~L~~L~ 395 (486)
+++|+.||
T Consensus 100 Cc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccchhHHHHHHHHcccchhcc
Confidence 67777765
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.00043 Score=62.19 Aligned_cols=57 Identities=25% Similarity=0.187 Sum_probs=27.2
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccc
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNF 189 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i 189 (486)
.+.+.|++.++.++. + .....|+.|+.|.||-|+|+.. ..+..+.+ |++|+|..|.|
T Consensus 19 ~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL--~pl~rCtr-LkElYLRkN~I 75 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSL--APLQRCTR-LKELYLRKNCI 75 (388)
T ss_pred HHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccc--hhHHHHHH-HHHHHHHhccc
Confidence 445555666665552 1 1234455566666666655521 12333333 44444444444
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.40 E-value=0.0057 Score=32.55 Aligned_cols=12 Identities=50% Similarity=0.717 Sum_probs=5.3
Q ss_pred CCeeeCCCcccC
Q 048443 354 LQVLGLASNNLQ 365 (486)
Q Consensus 354 L~~L~Ls~N~l~ 365 (486)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.29 E-value=0.00082 Score=63.84 Aligned_cols=61 Identities=26% Similarity=0.262 Sum_probs=31.7
Q ss_pred cCcccEEEcccccccccC-----ccchhccCCCCeeeCCCcccC-ccCchhccCCCCCCEEeCCCCC
Q 048443 327 PDILKGIILSSNRFDGEM-----PTSIANLKGLQVLGLASNNLQ-GHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
++.|+++.++++...... ...-..+..|..+.|+++... +..-+.+...++|+.+++-.++
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 355666666666542111 111233556677777776644 2222334555666666666555
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.15 E-value=0.011 Score=31.41 Aligned_cols=12 Identities=50% Similarity=0.564 Sum_probs=5.6
Q ss_pred ccEEECcCCccc
Q 048443 203 LRMVDLSHNLLQ 214 (486)
Q Consensus 203 L~~L~L~~N~l~ 214 (486)
|++||+++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.85 E-value=0.015 Score=28.67 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=6.0
Q ss_pred CCcEEEccCCCCCC
Q 048443 100 NFSYLNLSKNYFPR 113 (486)
Q Consensus 100 ~L~~L~Ls~N~l~~ 113 (486)
+|+.|++++|++++
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45555555555544
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.06 E-value=0.0044 Score=59.07 Aligned_cols=61 Identities=25% Similarity=0.186 Sum_probs=39.4
Q ss_pred cCcccEEEcccccccc--cCccchhccCCCCeeeCCCcccCccC-----chhccCCCCCCEEeCCCCC
Q 048443 327 PDILKGIILSSNRFDG--EMPTSIANLKGLQVLGLASNNLQGHI-----PSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~ 387 (486)
.+.|+.+++.++.... .+...-.+.+.|++|.|+++...... ...-..+..|+.+.|++++
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 4678888888776531 12222345788999999988754222 2223456778888888887
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.96 E-value=0.014 Score=59.41 Aligned_cols=59 Identities=25% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCCccEEECcCCc-cccccCccCcC-CCCCCEEEccCCc-cccCCCcc-ccCCCCCCEEEcCc
Q 048443 200 GSDLRMVDLSHNL-LQGKIPKSLAN-CAVLEISDLRNNQ-INDTFPIW-LGSLLELNILVLIQ 258 (486)
Q Consensus 200 l~~L~~L~L~~N~-l~~~~p~~~~~-l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~l~~ 258 (486)
+++|+.|++++.. ++...-..+.. +++|++|.+.++. +++..-.. ...++.|+.|+++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence 4555566665555 33222122222 5566666655444 33221111 22355566666554
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.19 E-value=0.12 Score=28.65 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=11.6
Q ss_pred CCCCeeeCCCcccCccCchhc
Q 048443 352 KGLQVLGLASNNLQGHIPSCL 372 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~~~~~~~ 372 (486)
++|+.|+|++|+|+...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666664333333
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.19 E-value=0.12 Score=28.65 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=11.6
Q ss_pred CCCCeeeCCCcccCccCchhc
Q 048443 352 KGLQVLGLASNNLQGHIPSCL 372 (486)
Q Consensus 352 ~~L~~L~Ls~N~l~~~~~~~~ 372 (486)
++|+.|+|++|+|+...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666664333333
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.59 E-value=0.0017 Score=65.23 Aligned_cols=188 Identities=22% Similarity=0.171 Sum_probs=103.9
Q ss_pred CCCEeeCcCCCCCCCCc----ccccCCCCCCeeccCCCCcccccCCchhccc--cC-CCCcEEEccCCCCCCCCCCCCCC
Q 048443 49 QLQWLDLAFNNFLRELP----ASIGSLSSLERLDTFPPMKIHGNIPKWLLNP--SM-KNFSYLNLSKNYFPRFDQHPTVL 121 (486)
Q Consensus 49 ~L~~L~Ls~n~~~~~~~----~~~~~l~~L~~L~L~~~n~i~~~~p~~~~~~--~l-~~L~~L~Ls~N~l~~~~~l~~l~ 121 (486)
.+..|.|.+|.+..... ..+.....|+.|+++ .|.+.+.--..+... .. ..|++|++..|.++....- .+
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~-~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~--~l 164 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLS-GNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA--PL 164 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcc-cCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH--HH
Confidence 36677777777655433 234556777777777 776663322211111 02 3456667777766532110 01
Q ss_pred Ccccc-cCccCeeecccCcccc----cCCcccc----CCCCCCEEECcCCcCcccc----cchhhhcCCCCcEEEccCcc
Q 048443 122 PWTTL-STKIRHYLISKNNLTG----EIPSWIC----NLSSLYVLDLSDNNLSGEL----LQCLGNFSGGLSVLSLQGKN 188 (486)
Q Consensus 122 p~~~~-~~~L~~L~Ls~n~l~~----~~~~~~~----~l~~L~~L~Ls~N~i~~~~----~~~l~~~~~~L~~L~L~~n~ 188 (486)
.+.+. ...+++++++.|.+.. .++..+. ...++++|.+++|.++... ...+......+..+++..|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 11122 4566777777776631 1222333 4667778888877766211 11222222225557777777
Q ss_pred cccc----CCccccCC-CCccEEECcCCcccccc----CccCcCCCCCCEEEccCCcccc
Q 048443 189 FFGT----TPDTFMNG-SDLRMVDLSHNLLQGKI----PKSLANCAVLEISDLRNNQIND 239 (486)
Q Consensus 189 i~~~----~~~~~~~l-~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~ 239 (486)
+.+. ....+..+ ..+++++++.|.|+... ...+..++.++++.++.|.+..
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 7543 22234444 56788888888887433 3344566788888888888764
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.39 E-value=0.028 Score=57.30 Aligned_cols=62 Identities=24% Similarity=0.212 Sum_probs=31.2
Q ss_pred cCccCeeecccCc-ccccCCcccc-CCCCCCEEECcCCc-Ccccccchhhh-cCCCCcEEEccCccc
Q 048443 127 STKIRHYLISKNN-LTGEIPSWIC-NLSSLYVLDLSDNN-LSGELLQCLGN-FSGGLSVLSLQGKNF 189 (486)
Q Consensus 127 ~~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~Ls~N~-i~~~~~~~l~~-~~~~L~~L~L~~n~i 189 (486)
+.+|+.|+++++. ++...-..+. .+++|++|.+.++. ++...-..+.. .+. |++|+++++..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~-L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPS-LRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCc-ccEEeeecCcc
Confidence 5666666666666 4322212222 25667776665555 44322222222 333 77777766554
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.33 E-value=0.0065 Score=53.41 Aligned_cols=84 Identities=15% Similarity=0.098 Sum_probs=48.5
Q ss_pred cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcCCCCcEEEccCccccccCCccccCCCCccEE
Q 048443 127 STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFSGGLSVLSLQGKNFFGTTPDTFMNGSDLRMV 206 (486)
Q Consensus 127 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 206 (486)
....+.||++.|++. ..-..|.-++.|..||++.|++. ..|..++.... +..+++..|..+ ..|.++...+.++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e-~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRE-TVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHH-HHHHHhhccchh-hCCccccccCCcchh
Confidence 455666666666665 34445555666666777766665 55665555554 555555554443 345555556666666
Q ss_pred ECcCCccc
Q 048443 207 DLSHNLLQ 214 (486)
Q Consensus 207 ~L~~N~l~ 214 (486)
++.+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 66555544
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.04 E-value=0.22 Score=27.58 Aligned_cols=17 Identities=59% Similarity=0.843 Sum_probs=8.4
Q ss_pred CCCCEEeCCCCCCCCCC
Q 048443 376 TNLESLDLSKNRLTFLE 392 (486)
Q Consensus 376 ~~L~~L~Ls~N~l~~L~ 392 (486)
++|++|++++|++++++
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34555555555544443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.01 E-value=0.27 Score=27.15 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=11.7
Q ss_pred CCCCEeeCcCCCCCCCCcccc
Q 048443 48 NQLQWLDLAFNNFLRELPASI 68 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~ 68 (486)
++|++|+|++|++..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666555444433
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.01 E-value=0.27 Score=27.15 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=11.7
Q ss_pred CCCCEeeCcCCCCCCCCcccc
Q 048443 48 NQLQWLDLAFNNFLRELPASI 68 (486)
Q Consensus 48 ~~L~~L~Ls~n~~~~~~~~~~ 68 (486)
++|++|+|++|++..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666555444433
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.87 E-value=0.0022 Score=64.46 Aligned_cols=181 Identities=23% Similarity=0.185 Sum_probs=113.1
Q ss_pred CCeeccCCCCcccccCC----chhccccCCCCcEEEccCCCCCCCCCCCCCCCcccc-c-CccCeeecccCccccc----
Q 048443 74 LERLDTFPPMKIHGNIP----KWLLNPSMKNFSYLNLSKNYFPRFDQHPTVLPWTTL-S-TKIRHYLISKNNLTGE---- 143 (486)
Q Consensus 74 L~~L~L~~~n~i~~~~p----~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~-~~L~~L~Ls~n~l~~~---- 143 (486)
+..|+|. +|.+..... ..+.. ...|+.|++++|.+..... .. +-.... . ..+++|++..|.+++.
T Consensus 89 l~~L~L~-~~~l~~~~~~~l~~~l~t--~~~L~~L~l~~n~l~~~g~-~~-l~~~l~~~~~~l~~L~l~~c~l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLA-NNRLGDRGAEELAQALKT--LPTLGQLDLSGNNLGDEGA-RL-LCEGLRLPQCLLQTLELVSCSLTSEGAAP 163 (478)
T ss_pred HHHhhhh-hCccccchHHHHHHHhcc--cccHhHhhcccCCCccHhH-HH-HHhhcccchHHHHHHHhhcccccccchHH
Confidence 7788888 888775433 34444 7788889999998872110 00 000111 1 4577788888888753
Q ss_pred CCccccCCCCCCEEECcCCcCcc----cccchhhh---cCCCCcEEEccCccccccC----CccccCCCC-ccEEECcCC
Q 048443 144 IPSWICNLSSLYVLDLSDNNLSG----ELLQCLGN---FSGGLSVLSLQGKNFFGTT----PDTFMNGSD-LRMVDLSHN 211 (486)
Q Consensus 144 ~~~~~~~l~~L~~L~Ls~N~i~~----~~~~~l~~---~~~~L~~L~L~~n~i~~~~----~~~~~~l~~-L~~L~L~~N 211 (486)
+...+....+++.+|++.|.+.. .++..+.. ...++++|.+++|.++... ...+...+. +..+++..|
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 34456667888889998888742 22333343 2223888888888876321 223444455 677889888
Q ss_pred ccccc----cCccCcCC-CCCCEEEccCCccccCCCc----cccCCCCCCEEEcCcc
Q 048443 212 LLQGK----IPKSLANC-AVLEISDLRNNQINDTFPI----WLGSLLELNILVLIQQ 259 (486)
Q Consensus 212 ~l~~~----~p~~~~~l-~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~n 259 (486)
.+.+. ....+..+ ..++.++++.|.|.+.... .+..++.++.+.+..|
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 87643 12234444 6778899999988765443 3445667888887776
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.10 E-value=0.013 Score=51.48 Aligned_cols=82 Identities=17% Similarity=0.081 Sum_probs=51.2
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcccc-cCccCeeecccCcccccCCccccCCCCCCEEECcCCcCcccccchhhhcC
Q 048443 98 MKNFSYLNLSKNYFPRFDQHPTVLPWTTL-STKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNNLSGELLQCLGNFS 176 (486)
Q Consensus 98 l~~L~~L~Ls~N~l~~~~~l~~l~p~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~~~ 176 (486)
...-+.||++.|++..+ ...+. ++.+..|+++.|++. ..|..+..+..+..+++..|..+ ..|.+++..+
T Consensus 41 ~kr~tvld~~s~r~vn~-------~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL-------GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred cceeeeehhhhhHHHhh-------ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 45556666666655432 22333 566666677777666 56666666666667777666666 5666666666
Q ss_pred CCCcEEEccCccc
Q 048443 177 GGLSVLSLQGKNF 189 (486)
Q Consensus 177 ~~L~~L~L~~n~i 189 (486)
. ++++++-+|.+
T Consensus 112 ~-~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 H-PKKNEQKKTEF 123 (326)
T ss_pred C-cchhhhccCcc
Confidence 5 66666666654
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.71 E-value=0.19 Score=27.15 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=5.2
Q ss_pred CCCEEECcCCcCc
Q 048443 153 SLYVLDLSDNNLS 165 (486)
Q Consensus 153 ~L~~L~Ls~N~i~ 165 (486)
+|++|++++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.25 E-value=0.86 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=13.4
Q ss_pred CCCcEEEccCCCCCCCCC
Q 048443 99 KNFSYLNLSKNYFPRFDQ 116 (486)
Q Consensus 99 ~~L~~L~Ls~N~l~~~~~ 116 (486)
++|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467788888888887665
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.08 E-value=0.18 Score=43.65 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=19.6
Q ss_pred CccCeeecccCcccccCCccccCCCCCCEEECcCCc
Q 048443 128 TKIRHYLISKNNLTGEIPSWICNLSSLYVLDLSDNN 163 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 163 (486)
..++.+|-++..|...--..+.+++.++.|.+.++.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 345666666666654444445555555555555543
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.17 E-value=0.59 Score=40.59 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=24.0
Q ss_pred cCcccEEEcccc-cccccCccchhccCCCCeeeCCCc
Q 048443 327 PDILKGIILSSN-RFDGEMPTSIANLKGLQVLGLASN 362 (486)
Q Consensus 327 ~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 362 (486)
.++|+.|++++| +|++..-..+..+++|+.|.+.+=
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 366888888866 466555556667777777776643
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=72.29 E-value=3.3 Score=23.29 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=8.1
Q ss_pred CCCcEEEccCCCCC
Q 048443 99 KNFSYLNLSKNYFP 112 (486)
Q Consensus 99 ~~L~~L~Ls~N~l~ 112 (486)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666554
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=61.68 E-value=24 Score=35.14 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=33.7
Q ss_pred ccEEEcccccccccCcc---chhccCCCCeeeCCCcccCc----cCchhccCCCCCCEEeCCCCC
Q 048443 330 LKGIILSSNRFDGEMPT---SIANLKGLQVLGLASNNLQG----HIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 330 L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
++.+.++.|........ ....-+.+..|++++|.... .+|........++.+..+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 66677777776532222 12334567788888887763 344455555566666666555
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.22 E-value=4.5 Score=40.79 Aligned_cols=59 Identities=25% Similarity=0.182 Sum_probs=35.1
Q ss_pred cCcccEEEccccccccc--CccchhccCCCCeeeCCCc--ccCccCchhccC--CCCCCEEeCCCCC
Q 048443 327 PDILKGIILSSNRFDGE--MPTSIANLKGLQVLGLASN--NLQGHIPSCLGS--LTNLESLDLSKNR 387 (486)
Q Consensus 327 ~~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~--l~~L~~L~Ls~N~ 387 (486)
.+.+..+.|++|++... +...-...++|+.|+|++| .+. ...++.. ...|++|-+.+|+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCc
Confidence 35677788888887631 1222233577888888888 333 1112222 2357778888887
No 90
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=61.06 E-value=6 Score=37.13 Aligned_cols=26 Identities=4% Similarity=-0.058 Sum_probs=10.5
Q ss_pred HHHHhhhcchhcchhhhchhhhhhhhh
Q 048443 455 FGFNFSTGIVRWFPKKLGMQLKTRKRI 481 (486)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~r~~~ 481 (486)
+|+++++.+..|++|+.. +++++..+
T Consensus 268 IVLIMvIIYLILRYRRKK-KmkKKlQY 293 (299)
T PF02009_consen 268 IVLIMVIIYLILRYRRKK-KMKKKLQY 293 (299)
T ss_pred HHHHHHHHHHHHHHHHHh-hhhHHHHH
Confidence 333344444444433332 34444443
No 91
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=59.77 E-value=6.1 Score=31.55 Aligned_cols=13 Identities=23% Similarity=0.209 Sum_probs=5.1
Q ss_pred hhhhhhhhHHHHh
Q 048443 447 GRIVVGLVFGFNF 459 (486)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (486)
+++++|++.+++.
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3344444433333
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=58.35 E-value=4.7 Score=48.63 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=24.3
Q ss_pred eCCCcccCccCchhccCCCCCCEEeCCCCC
Q 048443 358 GLASNNLQGHIPSCLGSLTNLESLDLSKNR 387 (486)
Q Consensus 358 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 387 (486)
||++|+|+...+..|..+++|+.|+|++|+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNP 30 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNP 30 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCc
Confidence 689999997777788888888887777665
No 93
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=54.00 E-value=9.4 Score=23.20 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=4.8
Q ss_pred hhhhhhhhhHHH
Q 048443 446 TGRIVVGLVFGF 457 (486)
Q Consensus 446 ~~~~~~~~~~~~ 457 (486)
++++++|+++.+
T Consensus 9 Iv~V~vg~~iii 20 (38)
T PF02439_consen 9 IVAVVVGMAIII 20 (38)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 94
>PF15179 Myc_target_1: Myc target protein 1
Probab=50.86 E-value=7.3 Score=32.96 Aligned_cols=22 Identities=23% Similarity=0.599 Sum_probs=11.6
Q ss_pred ceeeeehhhhhhhhhhhHHHHh
Q 048443 438 WKIVLTGYTGRIVVGLVFGFNF 459 (486)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~ 459 (486)
|...++.+.+..+||++++.++
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li 39 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALI 39 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555665555443
No 95
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=49.97 E-value=7.6 Score=32.06 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=12.9
Q ss_pred eeeeehhhhhhhhhhhHHHHhhh
Q 048443 439 KIVLTGYTGRIVVGLVFGFNFST 461 (486)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~ 461 (486)
..+++|+++|+.+++++++++++
T Consensus 48 knIVIGvVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALV 70 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhh
Confidence 34566766666555555544443
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.96 E-value=7.5 Score=39.27 Aligned_cols=62 Identities=31% Similarity=0.319 Sum_probs=28.3
Q ss_pred CccCeeecccCccccc--CCccccCCCCCCEEECcCC--cCccc-ccchhhhcCCCCcEEEccCccccc
Q 048443 128 TKIRHYLISKNNLTGE--IPSWICNLSSLYVLDLSDN--NLSGE-LLQCLGNFSGGLSVLSLQGKNFFG 191 (486)
Q Consensus 128 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N--~i~~~-~~~~l~~~~~~L~~L~L~~n~i~~ 191 (486)
+.+..+.|++|++... +..--...++|.+|+|++| .+... ....++.++ |++|-+.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~--Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLP--LEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCC--HHHeeecCCcccc
Confidence 4455555555555421 1111123456666666666 22210 011122222 6677777776643
No 97
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=46.28 E-value=12 Score=32.76 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=13.1
Q ss_pred cceeeeehhhhhhhhhhhHHHHhhhc
Q 048443 437 DWKIVLTGYTGRIVVGLVFGFNFSTG 462 (486)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (486)
....++++++.|++.+++++++++++
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHH
Confidence 34445555555555555444444444
No 98
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=45.83 E-value=17 Score=22.37 Aligned_cols=10 Identities=10% Similarity=-0.054 Sum_probs=4.3
Q ss_pred Hhhhcchhcc
Q 048443 458 NFSTGIVRWF 467 (486)
Q Consensus 458 ~~~~~~~~~~ 467 (486)
+..+.++.|.
T Consensus 25 va~~iYRKw~ 34 (43)
T PF08114_consen 25 VALFIYRKWQ 34 (43)
T ss_pred HHHHHHHHHH
Confidence 3333444444
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.75 E-value=19 Score=43.82 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=28.9
Q ss_pred EcccccccccCccchhccCCCCeeeCCCcccC
Q 048443 334 ILSSNRFDGEMPTSIANLKGLQVLGLASNNLQ 365 (486)
Q Consensus 334 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 365 (486)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777778999999999999999887
No 100
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.15 E-value=14 Score=29.57 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=10.3
Q ss_pred eehhhhhhhhhhhHHHHhh
Q 048443 442 LTGYTGRIVVGLVFGFNFS 460 (486)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~ 460 (486)
..++++|+++|++.+++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHH
Confidence 3455556666665555443
No 101
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=40.41 E-value=21 Score=26.12 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=6.9
Q ss_pred hhhhhhhhHHHHhhhc
Q 048443 447 GRIVVGLVFGFNFSTG 462 (486)
Q Consensus 447 ~~~~~~~~~~~~~~~~ 462 (486)
++++++++++++++..
T Consensus 10 ialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 10 IALIVALIIAIVVWTI 25 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 102
>PF15102 TMEM154: TMEM154 protein family
Probab=40.33 E-value=22 Score=29.19 Aligned_cols=17 Identities=12% Similarity=-0.244 Sum_probs=7.6
Q ss_pred hhhhHHHHhhhcchhcc
Q 048443 451 VGLVFGFNFSTGIVRWF 467 (486)
Q Consensus 451 ~~~~~~~~~~~~~~~~~ 467 (486)
+.+++++++++++++|.
T Consensus 70 lLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHHheeEEeecc
Confidence 33344444444444444
No 103
>PF15050 SCIMP: SCIMP protein
Probab=38.40 E-value=17 Score=28.41 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=4.7
Q ss_pred hcchhcchhhh
Q 048443 461 TGIVRWFPKKL 471 (486)
Q Consensus 461 ~~~~~~~~~~~ 471 (486)
++.-+|.+|..
T Consensus 28 yCvcR~~lRqG 38 (133)
T PF15050_consen 28 YCVCRWQLRQG 38 (133)
T ss_pred HHHHHHHHHcc
Confidence 33344544433
No 104
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=37.61 E-value=18 Score=34.11 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=18.3
Q ss_pred hhhhhhhhhhHHHHhhhcchhcchhhhchh
Q 048443 445 YTGRIVVGLVFGFNFSTGIVRWFPKKLGMQ 474 (486)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (486)
++..+++++|++++++++++|+-.+|.+..
T Consensus 262 iiaIliIVLIMvIIYLILRYRRKKKmkKKl 291 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRRKKKMKKKL 291 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 344455666666777777766656666543
No 105
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.67 E-value=26 Score=19.05 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=5.9
Q ss_pred CCCcEEEccCC
Q 048443 99 KNFSYLNLSKN 109 (486)
Q Consensus 99 ~~L~~L~Ls~N 109 (486)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 106
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=36.66 E-value=12 Score=25.89 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=0.0
Q ss_pred ehhhhhhhhhhhHHH
Q 048443 443 TGYTGRIVVGLVFGF 457 (486)
Q Consensus 443 ~~~~~~~~~~~~~~~ 457 (486)
.+++.+.+++++.++
T Consensus 12 aavIaG~Vvgll~ai 26 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAI 26 (64)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 107
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.29 E-value=25 Score=24.55 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=5.8
Q ss_pred hhhhhhhhhHHHH
Q 048443 446 TGRIVVGLVFGFN 458 (486)
Q Consensus 446 ~~~~~~~~~~~~~ 458 (486)
.+++++|++++.+
T Consensus 25 l~~f~~G~llg~l 37 (68)
T PF06305_consen 25 LIAFLLGALLGWL 37 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 108
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.55 E-value=25 Score=29.80 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=15.0
Q ss_pred ceeeeehhhhhhhhhhhHHHHhhhcchhcchhhhc
Q 048443 438 WKIVLTGYTGRIVVGLVFGFNFSTGIVRWFPKKLG 472 (486)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (486)
|......+.++.+++-.++.+..++..+|....++
T Consensus 135 w~P~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f~ 169 (184)
T COG3216 135 WGPVLKPMLVGAVPAGAIGGLLFYGLTRYSVTRFR 169 (184)
T ss_pred cchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333344444444444444
No 109
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=30.12 E-value=40 Score=28.25 Aligned_cols=7 Identities=29% Similarity=0.966 Sum_probs=2.6
Q ss_pred hhhhhhh
Q 048443 448 RIVVGLV 454 (486)
Q Consensus 448 ~~~~~~~ 454 (486)
+++++++
T Consensus 124 ~~i~~~v 130 (154)
T PF09835_consen 124 SLILGIV 130 (154)
T ss_pred HHHHHHH
Confidence 3333333
No 110
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.59 E-value=20 Score=31.53 Aligned_cols=25 Identities=16% Similarity=-0.040 Sum_probs=11.1
Q ss_pred eehhhhhhhhhhhHHHHhhhcchhc
Q 048443 442 LTGYTGRIVVGLVFGFNFSTGIVRW 466 (486)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (486)
.+.+++++|.|+++|+++++....|
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHH
Confidence 3344444444444444444444443
No 111
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=28.34 E-value=17 Score=26.89 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=9.5
Q ss_pred Hhhhcchhcchhhhch
Q 048443 458 NFSTGIVRWFPKKLGM 473 (486)
Q Consensus 458 ~~~~~~~~~~~~~~~~ 473 (486)
.+++..+.|+.|-.-.
T Consensus 49 g~~YL~y~~fLkDlIl 64 (91)
T PF01708_consen 49 GCLYLAYTWFLKDLIL 64 (91)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344456787777663
No 112
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=26.34 E-value=46 Score=27.66 Aligned_cols=9 Identities=11% Similarity=0.516 Sum_probs=3.5
Q ss_pred hhhhHHHHh
Q 048443 451 VGLVFGFNF 459 (486)
Q Consensus 451 ~~~~~~~~~ 459 (486)
++.+++.|+
T Consensus 17 ~~~flgYci 25 (148)
T TIGR00985 17 AAAFLGYAI 25 (148)
T ss_pred HHHHHHHHH
Confidence 333344433
No 113
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=25.66 E-value=37 Score=33.23 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=17.3
Q ss_pred eeeeehhhhhhhhhhhHHHHhhhcchh
Q 048443 439 KIVLTGYTGRIVVGLVFGFNFSTGIVR 465 (486)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (486)
...+.|+++++++++|++++++++..+
T Consensus 64 GlhaagFfvaflvslVL~~l~~f~l~r 90 (429)
T PF12297_consen 64 GLHAAGFFVAFLVSLVLTWLCFFLLAR 90 (429)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777787777777666544433
No 114
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=25.42 E-value=45 Score=31.69 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=4.8
Q ss_pred CCCEEeCCCC
Q 048443 377 NLESLDLSKN 386 (486)
Q Consensus 377 ~L~~L~Ls~N 386 (486)
.=+.+.++.+
T Consensus 229 seq~i~lt~~ 238 (306)
T PF01299_consen 229 SEQSINLTDN 238 (306)
T ss_pred CCCEEEecCC
Confidence 3345555544
No 115
>PF15069 FAM163: FAM163 family
Probab=23.62 E-value=69 Score=26.23 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=17.9
Q ss_pred eeehhhhhhhhhhhHHHHhhhcchhcchh
Q 048443 441 VLTGYTGRIVVGLVFGFNFSTGIVRWFPK 469 (486)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (486)
++.|.+.++|+.++++.++.+.+..+|-.
T Consensus 7 VItGgILAtVILLcIIaVLCYCRLQYYCC 35 (143)
T PF15069_consen 7 VITGGILATVILLCIIAVLCYCRLQYYCC 35 (143)
T ss_pred EEechHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 34455556666776666677677666533
No 116
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=23.17 E-value=58 Score=26.44 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=9.2
Q ss_pred hhhhhhhhHHHHhhhcchhcc
Q 048443 447 GRIVVGLVFGFNFSTGIVRWF 467 (486)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~ 467 (486)
..+++++++.+++++....|+
T Consensus 32 ~tILiaIvVliiiiivli~lc 52 (189)
T PF05568_consen 32 YTILIAIVVLIIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444454
No 117
>PRK11677 hypothetical protein; Provisional
Probab=20.95 E-value=57 Score=26.63 Aligned_cols=21 Identities=19% Similarity=-0.055 Sum_probs=13.2
Q ss_pred hhhhhhhhhhhHHHHhhhcch
Q 048443 444 GYTGRIVVGLVFGFNFSTGIV 464 (486)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~ 464 (486)
..+++++||+++++++.++..
T Consensus 5 ~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 345667777777776665543
Done!